BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009025
         (546 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/444 (80%), Positives = 399/444 (89%), Gaps = 2/444 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNV+MA  LYDRAR EKWRIDP  FSTLI++YG +GNFDGCLNVYEEMKA+GVKPN++
Sbjct: 258 RAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLV 317

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD MGRAKRPWQ K IYKEMT+NGL P+W TYA+LLRAYGRARY ED L VY+EM
Sbjct: 318 IYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEM 377

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG++LSV LYNTLLAMCADVGYT+EA  IFEDMKSS NC PDSWTFSS+ITI SC GK
Sbjct: 378 KEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGK 437

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAEAM N MLEAGFEPN+FVLTSLIQCYGKA RTD+VVR  +RL EL ITPDDRFCGC
Sbjct: 438 VSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGC 497

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           +LNVMTQ+PKEELGKL++C++K+N KLG VVKLLLEEQ+ EG F+KEA+ELF+SIS DVK
Sbjct: 498 MLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASELFDSISADVK 557

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
           KAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y DIQS+SPTQWSLHLKSLSLGAALTAL
Sbjct: 558 KAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSLSLGAALTAL 617

Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
           HIW+NDLSKA+E GEE P +LGINTGHGKHKYSDKGLASVFESHLKELNAPFH++PDKVG
Sbjct: 618 HIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPDKVG 677

Query: 518 WFLTTEAAAKSWLESRSS--LVSV 539
           WFLTT+ AA SWLESRS+  LV+V
Sbjct: 678 WFLTTKVAATSWLESRSAPELVAV 701



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 163/368 (44%), Gaps = 58/368 (15%)

Query: 1   MASNLCYSTCSL------------FSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSL 48
           MA +LC S  SL            FS     R   +FSF + +SLS +S+T LQ   VSL
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSF-KPNSLSLHSRTFLQITHVSL 59

Query: 49  -----QETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR-AGNV 102
                QETQ ++ + +  N Q P  KT    KSYIWVNP+SPRASKL++ SYD R A  V
Sbjct: 60  EDPIPQETQKADAS-NPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLV 114

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++A  L      E+        S +++  G     D  L    E  A+ V  NM      
Sbjct: 115 KIAESLDSCEATEE------DVSQVLRCLG-----DKIL----EQDAVIVLNNMTNPETA 159

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT--YASLLRAYGRARYGEDTLSVYREMKEK 220
           L   G  ++               L P+     Y   L+ + + R  +    ++ EM E+
Sbjct: 160 LLAFGFFRK--------------RLKPSREVILYNVTLKVFRKCRNLDRAEKLFDEMLER 205

Query: 221 GMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           G++     ++T+++ CA V    ++A E FE M     C PD  T+S+MI      G V 
Sbjct: 206 GVKPDNITFSTIIS-CARVSSLPNKAVEWFEKMPEF-GCHPDDVTYSAMIDAYGRAGNVD 263

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +++      +  +    ++LI+ YG +   D  +     +  LG+ P+      LL
Sbjct: 264 MALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLL 323

Query: 340 NVMTQTPK 347
           + M +  +
Sbjct: 324 DAMGRAKR 331


>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
          Length = 701

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/444 (79%), Positives = 396/444 (89%), Gaps = 2/444 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNV+MA  LYDRAR EKWRIDP  FSTLI++YG +GNFDGCLNVYEEMKA+GVKPN++
Sbjct: 258 RAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLV 317

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD MGRAKRPWQ K IYKEMT+NGL  +W TYA+LLRAYGRARY ED L VY+EM
Sbjct: 318 IYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEM 377

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG++LSV LYNTLLAMCADVGYT+EA  IFEDMKSS NC PDSWTFSS+ITI SC GK
Sbjct: 378 KEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGK 437

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAEAM N MLEAGFEPN+FVLTSLIQCYGKA RTD+VVR  +RL EL ITPDDRFCGC
Sbjct: 438 VSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGC 497

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           +LNVMTQ+PKEELGKL++C++K+N KLG VVKLLLEEQ+ EG F+KEA+ELF+SIS DV 
Sbjct: 498 MLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASELFDSISADVX 557

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
           KAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y DIQS+SPTQWSLHLKSLSLGAALTAL
Sbjct: 558 KAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSLSLGAALTAL 617

Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
           HIW+NDLSKA+E GEE P +LGINTGHGKHKYSDKGLASVFESHLKELNAPFH++PDKV 
Sbjct: 618 HIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPDKVX 677

Query: 518 WFLTTEAAAKSWLESRSS--LVSV 539
           WFLTT+ AA SWLESRS+  LV+V
Sbjct: 678 WFLTTKVAATSWLESRSAPELVAV 701



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 163/368 (44%), Gaps = 58/368 (15%)

Query: 1   MASNLCYSTCSL------------FSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSL 48
           MA +LC S  SL            FS     R   +FSF + +SLS +S+T LQ   VSL
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSF-KPNSLSLHSRTFLQITHVSL 59

Query: 49  -----QETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR-AGNV 102
                QETQ ++ + +  N Q P  KT    KSYIWVNP+SPRASKL++ SYD R A  V
Sbjct: 60  EDPIPQETQKADAS-NPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLV 114

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++A  L      E+        S +++  G     D  L    E  A+ V  NM      
Sbjct: 115 KIAESLDSCEATEE------DVSQVLRCLG-----DKIL----EQDAVIVLNNMTNPETA 159

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT--YASLLRAYGRARYGEDTLSVYREMKEK 220
           L   G  ++               L P+     Y   L+ + + R  +    ++ EM E+
Sbjct: 160 LLAFGFFRK--------------RLKPSREVILYNVTLKVFRKCRNLDXAEKLFDEMLER 205

Query: 221 GMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           G++     ++T+++ CA V    ++A E FE M     C PD  T+S+MI      G V 
Sbjct: 206 GVKPDNITFSTIIS-CARVSSLPNKAVEWFEKMPEF-GCHPDDVTYSAMIDAYGRAGNVD 263

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +++      +  +    ++LI+ YG +   D  +     +  LG+ P+      LL
Sbjct: 264 MALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLL 323

Query: 340 NVMTQTPK 347
           + M +  +
Sbjct: 324 DAMGRAKR 331


>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
 gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
          Length = 704

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/438 (78%), Positives = 394/438 (89%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNV+MAF LYDRAR E WRIDP  FST+IK++G AGN+DGCLNVYEEMKAIG+KPN++
Sbjct: 261 RAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLV 320

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD MGRAKRPWQ+KTIYKEM  NG SP+W TYASLLRAYGRARYGED L VY+EM
Sbjct: 321 IYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEM 380

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG+QL+V LYNTLLAMCADVGY +EA EIF+DMKSS  C PDSWTFSSMITI SC GK
Sbjct: 381 KEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCGGK 440

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAE M N+M+EAGF+PN+FVLTSLIQCYGKA+R DDVVR  N+L ELG+TPDDRFCGC
Sbjct: 441 VSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFNQLIELGLTPDDRFCGC 500

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           LLNV+TQTPK ELGKL++CV ++N KLG+VV+LLL EQD EG+F+ EA+ELF+ +S DV+
Sbjct: 501 LLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDKEGNFRTEASELFSVVSADVR 560

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
           KAYCNCLIDLCVNL+LL+ AC+LL+LGLTL++Y D+QSRSPTQWSL+LK LSLGAALTAL
Sbjct: 561 KAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTAL 620

Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
           H+WI DL+K LESGEE PPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFH++P+KVG
Sbjct: 621 HVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPEKVG 680

Query: 518 WFLTTEAAAKSWLESRSS 535
           WFLTT+ AAKSWLESRSS
Sbjct: 681 WFLTTKVAAKSWLESRSS 698



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 176/389 (45%), Gaps = 65/389 (16%)

Query: 1   MASNLCYSTCSLFSTPKLGRRTFTFSFQRDDSLS------------FYSKTSLQKRSVSL 48
           MA  LCYS  + F+       + T   QR  +LS             +SK  LQ  +VSL
Sbjct: 1   MAFQLCYSPPTFFTEHHFLSNSLTP--QRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSL 58

Query: 49  QE-----TQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR----- 98
           QE     TQ++ P+   +  +YP  K+GSS  S +WVNP+SPRASKL+++SY+ R     
Sbjct: 59  QEHAPQDTQNTIPSA-DEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLI 117

Query: 99  ---------------AGNVEMAFG-----------LYDRARNEKWRIDPNAFSTLIK--- 129
                            +V    G           L + + ++   +    F  ++K   
Sbjct: 118 RVSESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSK 177

Query: 130 ----------LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
                     ++    + +G   ++EEM   GVKP+ +T++ ++        P +    +
Sbjct: 178 QTIFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEWF 237

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M     +P+  TY++++ AYGRA   +   S+Y   + +  ++    ++T++ +    
Sbjct: 238 EKMPSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVA 297

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D    ++E+MK+    +P+   ++ ++       +  + + ++ EM++ GF P+   
Sbjct: 298 GNYDGCLNVYEEMKAI-GIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWAT 356

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             SL++ YG+A+  +D +     + E G+
Sbjct: 357 YASLLRAYGRARYGEDALIVYKEMKEKGL 385


>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 702

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/446 (73%), Positives = 388/446 (86%), Gaps = 2/446 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNV+MA  LYDRAR EKWRID   FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 257 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+D+MGRAKRPWQ K IYK++  NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 317 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 376

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG+ L+V LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 377 KEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 436

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAEA   +M EAGFEP LFVLTS+IQCYGKA++ DDVVR  +++ ELGITPDDRFCGC
Sbjct: 437 VSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 496

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
           LLNVMTQTP EE+GKL+ CVEK+  KLG VVK+L+EEQ+  EG FKKEA+EL +SI  DV
Sbjct: 497 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 556

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           KKAY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 557 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616

Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           LH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 617 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 676

Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
           VGWFLTT  AAK+WLESR S   V A
Sbjct: 677 VGWFLTTSVAAKAWLESRRSAGGVSA 702



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 169/365 (46%), Gaps = 48/365 (13%)

Query: 10  CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
           C+L S  PK   R+F  S+  + S  F+S+  LQ   VS+QE    +      +   P  
Sbjct: 21  CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGN-VEMAFGLYDRARNEKWRID------- 120
           +  +S KSY+WVNPKSPRAS+L+ KSYD+R  + +++A  L     NE    D       
Sbjct: 80  EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138

Query: 121 ----PNAFSTL--------------------------------IKLYGTAGNFDGCLNVY 144
                +A  TL                                +K++  + + +    ++
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           +EM   G+KP+  T+  ++    +   P +    +++M+  G  P+  T A+++ AYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
              +  LS+Y   + +  ++    ++TL+ +    G  D    I+E+MK+    +P+   
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL-GVKPNLVI 317

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++ +I       +  +A+ ++ +++  GF PN     +L++ YG+A+  DD +     + 
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMK 377

Query: 325 ELGIT 329
           E G++
Sbjct: 378 EKGLS 382


>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
          Length = 702

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/446 (73%), Positives = 387/446 (86%), Gaps = 2/446 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNV+MA  LYDRAR EKWRID   FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 257 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+D+MGRAKRPWQ K IYK++  NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 317 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 376

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG+ L+V LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 377 KEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 436

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAEA   +M EAGFEP LFVLTS+IQCYGKA++ DDVVR  +++ ELGITPDDRFCGC
Sbjct: 437 VSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 496

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
           LLNVMTQTP EE+GKL+ CVEK+  KLG VVK+L+EEQ+  EG FKKEA+EL +SI  DV
Sbjct: 497 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 556

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           KKAY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 557 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616

Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           LH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 617 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 676

Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
           VGWFLTT  AAK+WLE R S   V A
Sbjct: 677 VGWFLTTSVAAKAWLEFRRSAGGVSA 702



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 169/365 (46%), Gaps = 48/365 (13%)

Query: 10  CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
           C+L S  PK   R+F  S+  + S  F+S+  LQ   VS+QE    +      +   P  
Sbjct: 21  CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGN-VEMAFGLYDRARNEKWRID------- 120
           +  +S KSY+WVNPKSPRAS+L+ KSYD+R  + +++A  L     NE    D       
Sbjct: 80  EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138

Query: 121 ----PNAFSTL--------------------------------IKLYGTAGNFDGCLNVY 144
                +A  TL                                +K++  + + +    ++
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           +EM   G+KP+  T+  ++    +   P +    +++M+  G  P+  T A+++ AYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
              +  LS+Y   + +  ++    ++TL+ +    G  D    I+E+MK+    +P+   
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL-GVKPNLVI 317

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++ +I       +  +A+ ++ +++  GF PN     +L++ YG+A+  DD +     + 
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMK 377

Query: 325 ELGIT 329
           E G++
Sbjct: 378 EKGLS 382


>gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16390, chloroplastic; AltName: Full=Chloroplastic
           RNA-binding protein P67; Flags: Precursor
 gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 702

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/446 (73%), Positives = 386/446 (86%), Gaps = 2/446 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNV+MA  LYDRAR EKWRID   FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 257 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+D+MGRAKRPWQ K IYK++  NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 317 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 376

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG+ L+V LYNTLL+MCAD  Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 377 KEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 436

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAEA   +M EAGFEP LFVLTS+IQCYGKA++ DDVVR  +++ ELGITPDDRFCGC
Sbjct: 437 VSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 496

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
           LLNVMTQTP EE+GKL+ CVEK+  KLG VVK+L+EEQ+  EG FKKEA+EL +SI  DV
Sbjct: 497 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 556

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           KKAY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 557 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616

Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           LH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 617 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 676

Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
           VGWFLTT  AAK+WLESR S   V A
Sbjct: 677 VGWFLTTSVAAKAWLESRRSAGGVSA 702



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 169/365 (46%), Gaps = 48/365 (13%)

Query: 10  CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
           C+L S  PK   R+F  S+  + S  F+S+  LQ   VS+QE    +      +   P  
Sbjct: 21  CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGN-VEMAFGLYDRARNEKWRID------- 120
           +  +S KSY+WVNPKSPRAS+L+ KSYD+R  + +++A  L     NE    D       
Sbjct: 80  EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138

Query: 121 ----PNAFSTL--------------------------------IKLYGTAGNFDGCLNVY 144
                +A  TL                                +K++  + + +    ++
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           +EM   G+KP+  T+  ++    +   P +    +++M+  G  P+  T A+++ AYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
              +  LS+Y   + +  ++    ++TL+ +    G  D    I+E+MK+    +P+   
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL-GVKPNLVI 317

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++ +I       +  +A+ ++ +++  GF PN     +L++ YG+A+  DD +     + 
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMK 377

Query: 325 ELGIT 329
           E G++
Sbjct: 378 EKGLS 382


>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
 gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
          Length = 647

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/444 (74%), Positives = 386/444 (86%), Gaps = 1/444 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R GNVE A  LYDRAR EKWR+D   FSTLI++Y  +GNFD CLNVYEEMKA+GVKPN++
Sbjct: 205 RVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLV 264

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD MGRA+RPWQ K  Y+++ D+GLSP++ TYA+LLRAYGRARYGEDT+ +Y+EM
Sbjct: 265 IYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEM 324

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEK + L+V LYNT+LAMCAD+G+ DEA EIFEDMK+S    PDSWTFSSMIT+ SC GK
Sbjct: 325 KEKELSLNVLLYNTILAMCADLGFVDEAIEIFEDMKNS-GISPDSWTFSSMITMSSCCGK 383

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAE M NEM EAGF+PN+FVLTSLIQCYGKAQR DDVV+  NRL EL ITPDDRFCGC
Sbjct: 384 VSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKAQRIDDVVKTFNRLYELLITPDDRFCGC 443

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           LLNVMTQTP EELGKLV+CVE++N KLG+VVKLL+EEQ  EG+FKKEA +LF++IS +VK
Sbjct: 444 LLNVMTQTPNEELGKLVDCVERANPKLGHVVKLLVEEQGNEGNFKKEAADLFDNISTEVK 503

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
           KAYCNCLIDLCV LN+LE AC+LL+ GLTL +YTDIQS++ TQWSL+LKSLS GAALTAL
Sbjct: 504 KAYCNCLIDLCVKLNMLERACELLDHGLTLGIYTDIQSKTSTQWSLNLKSLSSGAALTAL 563

Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
           H+WINDLSKALE+GE+ PPLLGINTGHGKHKYS+KGLA+VFESHLKELNAPFH++PDKVG
Sbjct: 564 HVWINDLSKALEAGEQLPPLLGINTGHGKHKYSEKGLANVFESHLKELNAPFHEAPDKVG 623

Query: 518 WFLTTEAAAKSWLESRSSLVSVPA 541
           WFLTT+ AA+SWLESR    +V A
Sbjct: 624 WFLTTKVAAESWLESRKLADAVAA 647



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 169/409 (41%), Gaps = 44/409 (10%)

Query: 41  LQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAG 100
           LQ  +VSLQ+ +   P + +      + K GSS KSYIWVNPKS +AS L++ SYD R  
Sbjct: 1   LQITNVSLQDQKI--PQQETSKDSNFNEKNGSSSKSYIWVNPKSSKASTLRKSSYDAR-- 56

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
                +    +A       +PN    +  + G  GN      ++E   A+ +  NM   +
Sbjct: 57  -----YASLIKAAKSLNSCNPNK-DDVFNILGEFGN-----KLFEH-DAVVILNNMSNPD 104

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
             L           +K   + +  N     +N    +LR   + R       ++ EM E+
Sbjct: 105 TAL---------LALKFFRERLEFNREVVVYNVTMKVLR---KCRDLNKVEKLFDEMIER 152

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
            ++     ++T+++        D+A E FE M S     PD  TFS+MI      G V +
Sbjct: 153 AVKPDNVTFSTIISCARLCNLADKAVEWFEKMPSF-GLDPDDVTFSTMIDSYGRVGNVEK 211

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A ++++      +  +    ++LI+ Y  +   D  +     +  LG+ P+      LL+
Sbjct: 212 ALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLD 271

Query: 341 VMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DV 396
            M +  +  +  K  + +  S     Y     L        + ++  +++  + +    +
Sbjct: 272 AMGRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSL 331

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR--SPTQWSL 443
                N ++ +C +L  ++ A         +E++ D+++   SP  W+ 
Sbjct: 332 NVLLYNTILAMCADLGFVDEA---------IEIFEDMKNSGISPDSWTF 371


>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
 gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/438 (75%), Positives = 383/438 (87%), Gaps = 1/438 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNVE A  LYDRAR  +WR+D  AFSTLI++Y  AGNFDGCLNVYEEMKA+GVKPN++
Sbjct: 258 RAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLV 317

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD MGRAKRPWQVK  Y+++ DNGLSP++ TYA+LL AYGRARYGED   +YREM
Sbjct: 318 IYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREM 377

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG+ L+V LYN++LAMCAD+G+ D+A EIFEDMKSS   +PDSWTFSSMITI SC GK
Sbjct: 378 KEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSS-GIKPDSWTFSSMITIFSCCGK 436

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAE   NEM EAGF+PN+F+LTSLIQCYGKAQR DDVV   NR+ EL ITPDDRFCGC
Sbjct: 437 VSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVNTFNRIFELVITPDDRFCGC 496

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           LLNVMTQTP EEL KLV+C E++N KLGYVVKLL+EEQD EG+FK EAT+LF+SIS +VK
Sbjct: 497 LLNVMTQTPNEELSKLVKCAERANPKLGYVVKLLVEEQDSEGNFKNEATDLFDSISTEVK 556

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
           KAYCNCLIDLC+ LN+LE AC+LL+LGLTLE+YT+I SR+ TQWSL+LKSLS GAA+TAL
Sbjct: 557 KAYCNCLIDLCIKLNMLERACELLDLGLTLEIYTNIMSRTSTQWSLNLKSLSPGAAMTAL 616

Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
           HIW+NDLSK LE+GE+ PPLLGINTGHGKHKYS+KGLA+VFES+LKELN+PFH++PDKVG
Sbjct: 617 HIWMNDLSKVLEAGEQLPPLLGINTGHGKHKYSEKGLANVFESYLKELNSPFHEAPDKVG 676

Query: 518 WFLTTEAAAKSWLESRSS 535
           WFLTT+ AA+SWLESR S
Sbjct: 677 WFLTTKVAAESWLESRKS 694



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 169/385 (43%), Gaps = 60/385 (15%)

Query: 1   MASNLCYSTCSLF----STPKLGRRTFT--------FSFQRDDSLSFYSK-TSLQKRSVS 47
           MA NLC S  SL+    +TP    R           +   + ++LS  S+ TSLQ  +VS
Sbjct: 1   MAYNLCSSPSSLYKPLCNTPSSSSRDSKSRNLNNNFYDSSKINTLSSQSRATSLQITNVS 60

Query: 48  LQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR--------- 98
           LQ+ +   P + +        KTGSS KSYIWVNPKS RAS L++ SYD +         
Sbjct: 61  LQDEEL--PRQETSKDSNFKEKTGSSSKSYIWVNPKSSRASILRKSSYDAKYTSLVNAAK 118

Query: 99  -----AGNVEMAFGLYDRARNE------------------------------KWRIDPNA 123
                + N +  F +  +   +                              K+  +   
Sbjct: 119 YLNSCSPNKDDVFNVLSKFDGKLLEQDAVVILNNMSNPDTALLALKFFQERLKFNREVVV 178

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++  +K++    + D    +++EM   GVKP+  T++ ++          +    +++M 
Sbjct: 179 YNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFEKMP 238

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL P+  T ++++ +YGRA   E  LS+Y   +    +L  T ++TL+ +    G  D
Sbjct: 239 SFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFD 298

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
               ++E+MK+    +P+   ++ ++       +  + +  + ++++ G  P+     +L
Sbjct: 299 GCLNVYEEMKAL-GVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAAL 357

Query: 304 IQCYGKAQRTDDVVRALNRLPELGI 328
           +  YG+A+  +D  +    + E G+
Sbjct: 358 LHAYGRARYGEDAFKIYREMKEKGL 382



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           + +AE +F+EMLE G +P+ F  +++I C       D  V    ++P  G+ PDD
Sbjct: 192 LDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFEKMPSFGLEPDD 246


>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
          Length = 700

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/446 (73%), Positives = 383/446 (85%), Gaps = 2/446 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNVEMA  LYDRAR EKWRIDP  FSTLI++YG AGN+DGCLN+YEEMK++GVKPN++
Sbjct: 255 RAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLV 314

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD+MG+AKRPWQ   I+K++  NG  PNW+TYA+L+RAYGRARYGED L +YR+M
Sbjct: 315 IYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQM 374

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K KG++L+V LYNTLL+MCAD+GY DEAFEIF+DMKSS  C+PDSWTFSS+IT+ SC G+
Sbjct: 375 KGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGR 434

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAEA   EM EAGFEP LFVLTSLIQCYGKA++ DDVVR   ++ ELGI PDDRFCGC
Sbjct: 435 VSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGC 494

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
           LLNVMTQTP EE+GKL+ECVEK+  KLG VVK+L+EE++  EG  KKEA+EL +SI  DV
Sbjct: 495 LLNVMTQTPTEEIGKLIECVEKAKPKLGRVVKMLVEEENCEEGVLKKEASELIDSIGSDV 554

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
            KAY NCLIDLCVNLN LE AC++L+LGL  ++Y+ +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 555 NKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSATQWSLHLKSLSLGAALTA 614

Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           LH+W+NDLS+ AL SGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 615 LHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 674

Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
           VGWFLTT  AAK+WLESR S   V A
Sbjct: 675 VGWFLTTSVAAKTWLESRRSSAEVSA 700



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 159/356 (44%), Gaps = 49/356 (13%)

Query: 7   YSTCSLFSTP-KLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQY 65
           Y  C+L S   K   R+F  S+   +S  F+S+T LQ   VSLQE          + P+ 
Sbjct: 17  YPLCNLLSVHHKSTPRSFVSSYN-PNSPPFHSRTLLQTSHVSLQEPLPQE--TQIEKPEL 73

Query: 66  PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGN-VEMAFGLYDRARNEKWRIDPNA- 123
                 S  K Y WVNPKSPRAS+L+ KSYD+R  + V++A  L     NE    D  A 
Sbjct: 74  EANPPASGSKRYAWVNPKSPRASQLRRKSYDSRYSSLVKLAESLDSCPANEADVSDVIAK 133

Query: 124 ------------------------------------------FSTLIKLYGTAGNFDGCL 141
                                                     ++  +K++  + + +   
Sbjct: 134 FGSKLFEQDAVVTLNNMTNPETAPLVLNNLLETLKPTREVILYNVTMKVFRKSKDLEKSE 193

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
            +++EM   GVKP+  T+  L+    +   P +    +++M   GL P+  T A+++ AY
Sbjct: 194 KLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEWFEKMPSFGLEPDNVTLAAMIDAY 253

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           GRA   E  LS+Y   + +  ++    ++TL+ +    G  D    I+E+MKS    +P+
Sbjct: 254 GRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSL-GVKPN 312

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
              ++ ++       +  +A  +  +++  GFEPN     +LI+ YG+A+  +D +
Sbjct: 313 LVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDAL 368


>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
 gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
          Length = 777

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/446 (72%), Positives = 386/446 (86%), Gaps = 2/446 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNV+MA  LYDRAR EKWRID   FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 332 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 391

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+D+MGRAKRPWQ K IYK++  NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 392 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 451

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG+ L+V LYNTLL+MCAD  + DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 452 KEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 511

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VS+AEA   ++ EAGFEP LFVLTS+IQCYGKA++ DDVVR  +++ ELGITPDDRFCGC
Sbjct: 512 VSKAEAALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 571

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
           LLNVMTQTP EE+GKL+ CVEK+  KLG VVK+L+EEQ+  EG FKKEA+EL +SI  DV
Sbjct: 572 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 631

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           KKAY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 632 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 691

Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           LH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 692 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 751

Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
           VGWFLTT  AAK+WLESR S   V A
Sbjct: 752 VGWFLTTSVAAKAWLESRRSAGGVSA 777



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 156/339 (46%), Gaps = 46/339 (13%)

Query: 35  FYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKS 94
           F+S+  LQ   VS+QE    +      +   P  +  +S KSY+WVNPKSPRAS+L+ KS
Sbjct: 121 FHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIPEPTAS-KSYVWVNPKSPRASQLRRKS 179

Query: 95  YDTRAGN-VEMAFGLYDRARNEKWRID-----------PNAFSTL--------------- 127
           YD+R  + +++A  L     NE    D            +A  TL               
Sbjct: 180 YDSRYSSLIKLAESLDACKPNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNN 239

Query: 128 -----------------IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
                            +K++  + + +    +++EM   G+KP+  T+  ++    +  
Sbjct: 240 LLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNG 299

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
            P +    +++M+  G  P+  T A+++ AYGRA   +  LS+Y   + +  ++    ++
Sbjct: 300 VPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFS 359

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           TL+ +    G  D    I+E+MK+    +P+   ++ +I       +  +A+ ++ +++ 
Sbjct: 360 TLIRIYGVSGNYDGCLNIYEEMKAL-GVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLIT 418

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            GF PN     +L++ YG+A+  DD +     + E G++
Sbjct: 419 NGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLS 457


>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
          Length = 700

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/446 (73%), Positives = 382/446 (85%), Gaps = 2/446 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNVEMA  LYDRAR EKWRIDP  FSTLI++YG AGN+DGCLN+YEEMK++GVKPN++
Sbjct: 255 RAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLV 314

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD+MG+AKRPWQ   I+K++  NG  PNW+TYA+L+RAYGRARYGED L +YR+M
Sbjct: 315 IYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQM 374

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K KGM+L+V LYNTLL+MCAD+GY DEAFEIF+DMKSS  C+PDSWTFSS+IT+ SC G+
Sbjct: 375 KGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGR 434

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAEA   EM EAGFEP LFVLTSLIQCYGKA++ DDVVR   ++ ELGI PDDRFCGC
Sbjct: 435 VSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGC 494

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
           LLNVMTQTPKEE+GKL+ CVEK+  KLG V K+L+EE++  EG  KKEA+EL +SI  DV
Sbjct: 495 LLNVMTQTPKEEIGKLIGCVEKAKPKLGRVEKMLVEEENCEEGVLKKEASELIDSIGSDV 554

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
            KAY NCLIDLCVNLN LE AC++L+LGL  ++Y+ +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 555 NKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKSDTQWSLHLKSLSLGAALTA 614

Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           LH+W+NDLS+ AL SGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 615 LHVWMNDLSEAALTSGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 674

Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
           VGWFLTT  AAK+WLESR S   V A
Sbjct: 675 VGWFLTTSVAAKTWLESRRSSAEVSA 700



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 59/372 (15%)

Query: 1   MASNLCYSTCSLFSTP-----------KLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQ 49
           M+ +LC S  SL   P           K   R+F  S+   +S  F+S+T LQ R VSLQ
Sbjct: 1   MSFHLCSSPSSLLHDPYPLCNLLSVHHKSTPRSFVSSYN-PNSPPFHSRTLLQTRHVSLQ 59

Query: 50  ETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGN-VEMAFGL 108
           E          + P+       S  K Y WVNPKSPRAS+L+ KSYD+R  + V++A  L
Sbjct: 60  EPLPQE--TQIEKPELDANPPASGSKRYAWVNPKSPRASQLRRKSYDSRYSSLVKLAESL 117

Query: 109 YDRARNEKWRIDPNA-------------------------------------------FS 125
                NE    D  A                                           ++
Sbjct: 118 DSCPPNEADVSDVIAKFGSKLFEQDAVVALNNMTNPETAPLVLNNLLETLKPTREVILYN 177

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
             +K++  + + +    +++EM   GVKP+  T+  L+    +   P +    +++M   
Sbjct: 178 VTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFEKMPSF 237

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           GL P+  T A+++ AYGRA   E  LS+Y   + +  ++    ++TL+ +    G  D  
Sbjct: 238 GLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGC 297

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             I+E+MKS    +P+   ++ ++       +  +A  +  +++  GFEPN     +LI+
Sbjct: 298 LNIYEEMKSL-GVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIR 356

Query: 306 CYGKAQRTDDVV 317
            YG+A+  +D +
Sbjct: 357 AYGRARYGEDAL 368


>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 702

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/446 (73%), Positives = 383/446 (85%), Gaps = 2/446 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNVEMA  LYDRAR EKWRID   FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 257 RAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD+MGRAKRPWQ K I+K++  NG +PNW+TYA+L+RAYGRARYG+D L +YREM
Sbjct: 317 IYNRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWSTYAALIRAYGRARYGDDALVIYREM 376

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG+ L+V LYNTLL+MCAD+GY DEAFEIF+DMK+ E C PDSWTFSS+IT+ SC G+
Sbjct: 377 KEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYSCSGR 436

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAEA   +M EAGFEP LFVLTS+IQCYGKA++ DDVVR  +++ ELGITPDDRFCGC
Sbjct: 437 VSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 496

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD-IEGDFKKEATELFNSISKDV 396
           LLNVMTQTP EE+GKL+ CVEK+  +    VK+L+EEQ+  EG FKKE +EL +SI  DV
Sbjct: 497 LLNVMTQTPSEEIGKLIGCVEKAKPQNIGQVKMLVEEQNGEEGVFKKETSELIDSIGSDV 556

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           KKAY NCLIDLCVNLN LE AC++L+LGL  ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 557 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616

Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           LH+WINDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 617 LHVWINDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 676

Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
           VGWFLTT  AAK+WLESR S   V A
Sbjct: 677 VGWFLTTSVAAKAWLESRRSSGGVSA 702



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 168/365 (46%), Gaps = 48/365 (13%)

Query: 10  CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
           C+L S  PK   R+F  S+  + S  F+S+  LQ   VS+QE    +      +   P  
Sbjct: 21  CNLLSVYPKSTPRSFLCSYNPNSS-PFHSRNLLQVTHVSVQEAIPQSEKSKLDDADLPLP 79

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGN-VEMAFGLYDRARNEKWRID------- 120
              +S KSY+WVNPKSPRAS+L+ KSYD+R  + +++A  L     NE    D       
Sbjct: 80  DPPAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDSCKPNEADVCDVITGFGG 138

Query: 121 ----PNAFSTL--------------------------------IKLYGTAGNFDGCLNVY 144
                +A  TL                                +K++  + N +    ++
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPIVLNNLLETMKPSREVILYNVTLKVFRKSKNLEKSEKLF 198

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           +EM   GVKP+  T+  ++    ++  P +    +++M+  G  P+  T A+++ AYGRA
Sbjct: 199 DEMLERGVKPDNATFTTIISCARQSGVPKRAVEWFEKMSSFGCEPDNVTLAAMIDAYGRA 258

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
              E  LS+Y   + +  ++    ++TL+ +    G  D    I+E+MK+    +P+   
Sbjct: 259 GNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL-GVKPNLVI 317

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++ ++       +  +A+ +  +++  GF PN     +LI+ YG+A+  DD +     + 
Sbjct: 318 YNRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWSTYAALIRAYGRARYGDDALVIYREMK 377

Query: 325 ELGIT 329
           E G++
Sbjct: 378 EKGLS 382


>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 689

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/437 (74%), Positives = 379/437 (86%), Gaps = 1/437 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGN++MA  LYDRAR EKWR+D   FSTLIK+YG AGN+DGCLNVY+EMKA+GVK NM+
Sbjct: 248 RAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGNYDGCLNVYQEMKALGVKSNMV 307

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD MGRAKRPWQ K+IY EMT+NG  PNW TYASLLRAYGR RY ED L VY+EM
Sbjct: 308 IYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLLRAYGRGRYSEDALFVYKEM 367

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKGM+++  LYNTLLAMCAD+G  D+AF+IFEDMKSS  C  DSWTFSS+ITI SC G 
Sbjct: 368 KEKGMEMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATCLCDSWTFSSLITIYSCSGN 427

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAE M NEM+E+GF+P +FVLTSL+QCYGK  RTDDV++  N+L +LGI+PDDRFCGC
Sbjct: 428 VSEAERMLNEMIESGFQPTIFVLTSLVQCYGKVGRTDDVLKTFNQLLDLGISPDDRFCGC 487

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEE-QDIEGDFKKEATELFNSISKDV 396
           LLNVMTQTPKEELGKL +CVEK+N KLG V++ L+E  ++ +G+F+KEA+ELFNSI+ +V
Sbjct: 488 LLNVMTQTPKEELGKLNDCVEKANPKLGSVLRYLVEGLEEGDGEFRKEASELFNSIADEV 547

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           KK +CN LIDLCVNLNLL+ AC+LL+LGLTLE+YTDIQS+S TQWSLHLKSLSLGA+LTA
Sbjct: 548 KKPFCNSLIDLCVNLNLLDKACELLDLGLTLEIYTDIQSKSQTQWSLHLKSLSLGASLTA 607

Query: 457 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKV 516
           LH WINDLSK LESGE+ PPLLGINTGHGKH+YSDKGLA+V ESHL ELNAPFH++PDK 
Sbjct: 608 LHAWINDLSKTLESGEDLPPLLGINTGHGKHRYSDKGLANVVESHLNELNAPFHEAPDKA 667

Query: 517 GWFLTTEAAAKSWLESR 533
           GWFLTT+ AAKSWLESR
Sbjct: 668 GWFLTTQVAAKSWLESR 684



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 170/394 (43%), Gaps = 66/394 (16%)

Query: 1   MASNLCYSTCSLF-----------STPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQ 49
           MA NLC S  SLF           S  K   R  +  FQ   S + +SKT L    VSL 
Sbjct: 1   MAYNLCSSPSSLFHDLPSISSSSSSCRKFKLRNSSSFFQPSPSPTPHSKTLLH---VSLH 57

Query: 50  ETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGN-VEMAFG- 107
           E    +   H+         + SS  +YIWVNP+SPRA +L+ +SYD R  + V +A   
Sbjct: 58  EPIPEHLPPHAN-------SSSSSKSNYIWVNPRSPRAKQLERRSYDARYTSLVNLALSL 110

Query: 108 ----------------LYDRARNE----------------------KWRIDPN----AFS 125
                           L+ R   +                      + RI P      ++
Sbjct: 111 DSCNPSQEDVSLVLKDLWGRVIEQDAVIVINNMSNPRVVPFVLNYFQRRIRPTREVILYN 170

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
             +K++  + + D    +++EM   GV+P+ ++++ ++        P +    +++M   
Sbjct: 171 VTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVSFSTIISCARICSLPNKAVEWFEKMPSF 230

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
              P+  TY++++ AYGRA   +  L +Y   + +  +L    ++TL+ M    G  D  
Sbjct: 231 RCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGNYDGC 290

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             ++++MK+    + +   +++++       +  +A++++ EM   GF PN     SL++
Sbjct: 291 LNVYQEMKAL-GVKSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLLR 349

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            YG+ + ++D +     + E G+  +      LL
Sbjct: 350 AYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLL 383


>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 685

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/437 (74%), Positives = 377/437 (86%), Gaps = 1/437 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGN++MA  LYDRAR EKWR+D   FSTLIK+YG AGN+DGCLNVY+EMK +GVKPNM+
Sbjct: 244 RAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQEMKVLGVKPNMV 303

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD MGRAKRPWQ K+IY EMT+NG SPNW TYASLLRAYGR RY ED L VY+EM
Sbjct: 304 IYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEM 363

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKGM+++  LYNTLLAMCAD+G  +EAFEIFEDMK+S  C  DSWTFSS+ITI SC G 
Sbjct: 364 KEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCLCDSWTFSSLITIYSCTGN 423

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAE M NEM+E+G +P +FVLTSL+QCYGK  RTDDVV+  N+L +LGI+PDDRFCGC
Sbjct: 424 VSEAERMLNEMIESGSQPTIFVLTSLVQCYGKVGRTDDVVKTFNQLLDLGISPDDRFCGC 483

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVK-LLLEEQDIEGDFKKEATELFNSISKDV 396
           LLNVMTQTPKEELGKL +CV+K+N KLG VV+ L+   ++  G+FKKEA+ELFNSI+ +V
Sbjct: 484 LLNVMTQTPKEELGKLNDCVKKANPKLGSVVRYLVEGLEEGGGEFKKEASELFNSIADEV 543

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           KK +CN LIDLCVNLNLL+ AC+LL+LGLTLE+YTD+QS+S TQWSLHLKSLSLGA+LTA
Sbjct: 544 KKPFCNSLIDLCVNLNLLDKACELLDLGLTLEIYTDVQSKSQTQWSLHLKSLSLGASLTA 603

Query: 457 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKV 516
           LH WINDLSK LESGE+ PPLLGINTGHGKH+YSDKGLASV ESHL ELNAPFH++PDK 
Sbjct: 604 LHAWINDLSKTLESGEDLPPLLGINTGHGKHRYSDKGLASVVESHLNELNAPFHEAPDKA 663

Query: 517 GWFLTTEAAAKSWLESR 533
           GWFLTT+ AAKSWLESR
Sbjct: 664 GWFLTTQVAAKSWLESR 680



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 170/388 (43%), Gaps = 58/388 (14%)

Query: 1   MASNLCYSTCSLF-----STPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSN 55
           MA NLC S  SLF      +     R F        SL+ +SKT L    VSL E +   
Sbjct: 1   MAYNLCSSPSSLFHDLPSISSSSSSRKFKLRNLSSSSLTPHSKTLLH---VSLHEHE--- 54

Query: 56  PTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGN-VEMAFG------- 107
           P      P      + SS  +YIWVNP+SPRA +L+ +SYD R  + V +A         
Sbjct: 55  PIPEHLPPD--AKSSSSSKSNYIWVNPRSPRAKQLESRSYDARYTSLVNLAHSLDSCNPS 112

Query: 108 ----------LYDRARNE----------------------KWRIDPN----AFSTLIKLY 131
                     L DR   +                      + RI P      ++  +K++
Sbjct: 113 QEDVSLVLKDLGDRVIEQDAVIVINNMSNSRVVPFVLNYFQRRIRPTREVILYNVTLKVF 172

Query: 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
             + + D    +++EM   GV+P+ +T++ ++        P +    +++M+  G  P+ 
Sbjct: 173 RKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEWFEKMSSFGCEPDD 232

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
            TY++++ AYGRA   +  L +Y   + +  +L    ++TL+ M    G  D    ++++
Sbjct: 233 VTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQE 292

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           MK     +P+   +++++       +  +A++++ EM   GF PN     SL++ YG+ +
Sbjct: 293 MKVL-GVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGR 351

Query: 312 RTDDVVRALNRLPELGITPDDRFCGCLL 339
            ++D +     + E G+  +      LL
Sbjct: 352 YSEDALFVYKEMKEKGMEMNTHLYNTLL 379


>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 706

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/438 (72%), Positives = 377/438 (86%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG+++MA  LYDRAR EKWRI+P  FSTLIK+YG AGN+DGCLNVYEEMKA+GVKPN++
Sbjct: 263 KAGDIDMALNLYDRARTEKWRIEPATFSTLIKMYGVAGNYDGCLNVYEEMKALGVKPNLV 322

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD MGRAKRPWQ +TIYKEM +N + PN  TYASLL AYGRAR+ ED L VYREM
Sbjct: 323 VYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRARFCEDALVVYREM 382

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +EK M L+  LYN+LLAMCADVGYTD AFEIFEDMKSS+ C PDSWTFSS+ITI SC G+
Sbjct: 383 REKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSGR 442

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAE M NEM+E+GFEP +FVLTSL+QCYGKA+RTDDVV+  N+L ++GI PDDRFCGC
Sbjct: 443 VSEAERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLDMGIEPDDRFCGC 502

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           LLNVMTQTPKEELGKL++CVEK+N KL +VV+ L+E  + +G+F+KEA ELF+SI+  VK
Sbjct: 503 LLNVMTQTPKEELGKLIDCVEKANPKLSFVVRYLVEGLEGDGEFRKEALELFSSITDGVK 562

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
           +A+CN LIDLC+NL+LL+ A  LL+LGLTLE+YTDIQSRS TQWSL L+ LS+GA+LTA 
Sbjct: 563 RAFCNSLIDLCINLDLLDRARVLLDLGLTLEIYTDIQSRSQTQWSLILRGLSVGASLTAF 622

Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
           H+WINDLSKA ESGE+ PPLLGI+TGHGKH+YSDKGLA V ESH+KEL+APF +SPDK G
Sbjct: 623 HVWINDLSKAFESGEDLPPLLGIHTGHGKHRYSDKGLAGVIESHMKELDAPFRESPDKAG 682

Query: 518 WFLTTEAAAKSWLESRSS 535
           WFLTT+ A KSW+ESR S
Sbjct: 683 WFLTTQVAVKSWMESRGS 700



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 147/330 (44%), Gaps = 47/330 (14%)

Query: 40  SLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRA 99
           SLQ+ S+  Q+ Q +N  K ++    P G + SS  SYIWVNPKSPRA +L +KSYD R 
Sbjct: 58  SLQE-SIPQQQPQDANSQKDAKFDN-PIGNSTSSKSSYIWVNPKSPRAKQLGKKSYDARY 115

Query: 100 GNV------------------EMAFGLYDRARNEKWRIDPN------------------- 122
            ++                  ++   L D+   +   I  N                   
Sbjct: 116 SSLVKLSNALDSCEPTEHDVSQILKCLGDKVIEQDAVIIINNMENSVVVPFVLQYVQRKS 175

Query: 123 -------AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
                   ++  +K++    + DG   V+ EM   GVKP+ +T++ ++        P + 
Sbjct: 176 IPTREVILYNVTLKVFRKCKDLDGAEKVFGEMLQRGVKPDNVTFSTIISCARSCYLPDKA 235

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
              +++M   G  P+  TY+ ++ +YG+A   +  L++Y   + +  ++    ++TL+ M
Sbjct: 236 VEWFEKMPLFGCEPDDVTYSVMIDSYGKAGDIDMALNLYDRARTEKWRIEPATFSTLIKM 295

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  D    ++E+MK+    +P+   +++++       +  +A  ++ EM+     P
Sbjct: 296 YGVAGNYDGCLNVYEEMKAL-GVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDILP 354

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           N     SL+  YG+A+  +D +     + E
Sbjct: 355 NRATYASLLHAYGRARFCEDALVVYREMRE 384


>gi|224089793|ref|XP_002308814.1| predicted protein [Populus trichocarpa]
 gi|222854790|gb|EEE92337.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/444 (69%), Positives = 362/444 (81%), Gaps = 20/444 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNVE A  LYDRAR  +WR+D   FSTLI++Y  A NFDGCLN YEEMKA+GVKPN++
Sbjct: 212 RAGNVEKALSLYDRARTGEWRLDATPFSTLIRIYKVARNFDGCLNFYEEMKALGVKPNLV 271

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  LLD MGRAKRPWQVK  Y+++ DNGLSP++ TYA+LL AYGRARYG+D   +YREM
Sbjct: 272 IYKILLDDMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGDDAFKIYREM 331

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG  +                   E+ EIFEDMKSS   +PDSWTFSSMITI SC GK
Sbjct: 332 KEKGFGI-------------------ESVEIFEDMKSS-GIKPDSWTFSSMITIFSCCGK 371

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAE   NEM EAGF+PN+F+LTSLIQCYGKAQR DDVV+  NR+ +  ITPDDRFCGC
Sbjct: 372 VSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVKTFNRIFDWVITPDDRFCGC 431

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           LLNVMTQTP EEL KLV+CVE++N KLGYVVKLL+EEQD EG+FK EAT+LF+SIS +VK
Sbjct: 432 LLNVMTQTPNEELSKLVKCVERANPKLGYVVKLLVEEQDSEGNFKNEATDLFDSISTEVK 491

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
           KAYCNCLIDLC+ LN+LE + +LL+LGLTLE+YT+I SR+ TQWSL+LKSLS GAALTAL
Sbjct: 492 KAYCNCLIDLCIKLNMLERSWELLDLGLTLEIYTNIMSRTSTQWSLNLKSLSPGAALTAL 551

Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
           HIW+NDLSK LE+GE+ PPLLG+NTGHGK KYS+KGLA+V ES+LKELN+PFH++PDKVG
Sbjct: 552 HIWMNDLSKVLEAGEQLPPLLGMNTGHGKRKYSEKGLANVLESYLKELNSPFHEAPDKVG 611

Query: 518 WFLTTEAAAKSWLESRSSLVSVPA 541
           WFLTT+ AA+SWLESR S  +V A
Sbjct: 612 WFLTTKVAAESWLESRKSTDAVAA 635



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           + +AE +F+EMLE G +P+ F  +++I C       D  V    ++P  G+ PDD
Sbjct: 146 LDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFEKMPSFGLEPDD 200


>gi|356532363|ref|XP_003534743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 693

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 301/445 (67%), Positives = 355/445 (79%), Gaps = 6/445 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             +GN +MA  LY RA+ EKWR+D  AFS LIK+ G   NFDGCL+VY +MK +G KPNM
Sbjct: 238 AHSGNADMALKLYGRAKAEKWRVDTAAFSALIKMCGMLENFDGCLSVYNDMKVLGAKPNM 297

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL  MGRAKR    K IY+EM  NG SPNW T+A+LL+AY +AR+ ED L VY+E
Sbjct: 298 VTYNALLYAMGRAKRALDAKAIYEEMISNGFSPNWPTHAALLQAYCKARFPEDALGVYKE 357

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  GM ++  LYN LLAMCADVGYTD A EIF +MKSS  CQPDSWTFSSMIT+ S  G
Sbjct: 358 MKGNGMDITADLYNKLLAMCADVGYTDRASEIFYEMKSSGTCQPDSWTFSSMITMYSRSG 417

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           KVSEAE M NEM+++GF+P +FV+TSLI CYGKA+RTDDVV+   +L +LGI P+D FC 
Sbjct: 418 KVSEAEGMLNEMIQSGFQPTIFVMTSLICCYGKAKRTDDVVKIFKQLLDLGIVPNDHFCC 477

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD--FKKEATELFNSISK 394
            LLNV+TQTPKEELGKL +C+EK+N+KLG VV+ L+EE  +EGD  F+KEA EL NSI  
Sbjct: 478 SLLNVLTQTPKEELGKLTDCIEKANTKLGTVVRYLMEE--LEGDEAFRKEALELLNSIDA 535

Query: 395 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454
           +VKK  CNCLIDLCV LN+ E A  LL+LGL LE+YT+IQ +S TQWSLHLK LS+GAA+
Sbjct: 536 EVKKPLCNCLIDLCVKLNVPERARDLLDLGLMLEIYTNIQFKSQTQWSLHLKELSVGAAM 595

Query: 455 TALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 514
           TALH+WIN+LSKALESGE+ PPLLGINTG GKHKYSDKGLASVFESHLKELNAPFH+S  
Sbjct: 596 TALHVWINELSKALESGEDLPPLLGINTGQGKHKYSDKGLASVFESHLKELNAPFHES-- 653

Query: 515 KVGWFLTTEAAAKSWLESRSSLVSV 539
           K GWFL T+AAAKSWLESR S  S+
Sbjct: 654 KAGWFLVTKAAAKSWLESRDSTESI 678



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 139/326 (42%), Gaps = 48/326 (14%)

Query: 36  YSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSY 95
           +SKT L     S Q     N  + +     P  K+ S  K   WVNP+SPRA +L++ S 
Sbjct: 31  HSKTLLHAPRFSFQPF---NTLQDAAKLDDPDAKSPSLSKKSFWVNPRSPRAKQLQQNSP 87

Query: 96  DTRAGNV-------------------------------EMAFGLYDRARNE--------- 115
             R+ ++                               +  F L   A            
Sbjct: 88  HARSSSLTKLAKSLDSCNPTEEHVSEILNVLGNNVAERDAVFILNTMANPNTALLALKYF 147

Query: 116 KWRIDPNAFSTL----IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           + +I P     L    +K+     +F+G   +++EM   GV+PN+IT++ ++ +      
Sbjct: 148 QQKISPGKHVVLYNVTLKVLREVKDFEGSEKLFDEMLQRGVEPNLITFSTIISSASVCSL 207

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
           P +    +++M   G+ P+ +  + ++ AY  +   +  L +Y   K +  ++    ++ 
Sbjct: 208 PDKAMEWFEKMPSFGVEPDASVASFMIHAYAHSGNADMALKLYGRAKAEKWRVDTAAFSA 267

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           L+ MC  +   D    ++ DMK     +P+  T+++++       +  +A+A++ EM+  
Sbjct: 268 LIKMCGMLENFDGCLSVYNDMKVL-GAKPNMVTYNALLYAMGRAKRALDAKAIYEEMISN 326

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVV 317
           GF PN     +L+Q Y KA+  +D +
Sbjct: 327 GFSPNWPTHAALLQAYCKARFPEDAL 352



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/71 (22%), Positives = 33/71 (46%)

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           +E +F+EML+ G EPNL   +++I         D  +    ++P  G+ PD      +++
Sbjct: 176 SEKLFDEMLQRGVEPNLITFSTIISSASVCSLPDKAMEWFEKMPSFGVEPDASVASFMIH 235

Query: 341 VMTQTPKEELG 351
               +   ++ 
Sbjct: 236 AYAHSGNADMA 246


>gi|356532365|ref|XP_003534744.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 705

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 287/438 (65%), Positives = 352/438 (80%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +  NV+MA  LY RA+ EKW +D + FSTLIK+YG  GN+  CL ++ EMK +GVKP ++
Sbjct: 246 QTNNVDMALSLYGRAKAEKWSLDASTFSTLIKMYGVLGNYVECLRIFGEMKVLGVKPTVV 305

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL ++ R+K+ WQ K +YKEM  NG+SP++ TYA+LLR Y  A+Y ED LSVY+EM
Sbjct: 306 TYNTLLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYATLLRIYAGAQYREDALSVYKEM 365

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  GM ++V LYN LL MCADVG  +EA EIFEDMKSS  CQPDS TFSS+IT+ SC GK
Sbjct: 366 KGNGMDMTVDLYNRLLDMCADVGCIEEAVEIFEDMKSSGTCQPDSLTFSSLITVYSCNGK 425

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSEAE M NEM+++GF+P ++VLTSL+QCYG+A++TDDVV+   +L +LGI PD  FC C
Sbjct: 426 VSEAEGMLNEMIQSGFQPTIYVLTSLVQCYGRAKQTDDVVKIFKQLLDLGIVPDVYFCCC 485

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           LLNVMTQTPKEE GKL +C+EK+N++LG VV+ L+E Q+ +GDF+KEA+EL NSI   VK
Sbjct: 486 LLNVMTQTPKEEFGKLTDCIEKANTRLGSVVRYLVEGQEGDGDFRKEASELLNSIDFKVK 545

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
           K  CNCLIDLCV+LN    A  +L+LGL LE+Y +IQSRS TQWSLHLK LS+GAA+TAL
Sbjct: 546 KPLCNCLIDLCVSLNAPNRARDVLDLGLMLEIYKNIQSRSETQWSLHLKKLSVGAAITAL 605

Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
           H+WINDLSKALES E+ PPLLG+NTG GKHKYSDKGLASVFESHL+ELNAPFH +PDK G
Sbjct: 606 HVWINDLSKALESWEDLPPLLGVNTGQGKHKYSDKGLASVFESHLRELNAPFHQAPDKAG 665

Query: 518 WFLTTEAAAKSWLESRSS 535
           WFL T+ AAKSWLESR S
Sbjct: 666 WFLVTKEAAKSWLESRGS 683



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 131/309 (42%), Gaps = 47/309 (15%)

Query: 66  PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR-----------------AGNVEMAF-G 107
           P   + S  K+ IWVNP SPRA  L+ KS   R                 A +V     G
Sbjct: 63  PDANSLSLSKTRIWVNPNSPRAKHLQPKSPSARYSYLARLTESLNSCTPSAQHVSTILKG 122

Query: 108 LYDRARNE----------------------KWRIDPNA------FSTLIKLYGTAGNFDG 139
           L D                           + +I P+       ++  +K +  + +F+G
Sbjct: 123 LRDNVSERDAVFILDKMTNPETAPFVLGHFRDKIKPSTDKEVILYNATLKAFRKSRDFEG 182

Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
              +++EM   GVKP+ IT++ L+++      P +    +K+M   G  P+  T ++++ 
Sbjct: 183 AEKLFDEMLQRGVKPDNITFSTLINSARMCALPDKAVEWFKKMPSFGCEPDAMTCSAMVS 242

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
           AY +    +  LS+Y   K +   L  + ++TL+ M   +G   E   IF +MK     +
Sbjct: 243 AYAQTNNVDMALSLYGRAKAEKWSLDASTFSTLIKMYGVLGNYVECLRIFGEMKVL-GVK 301

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           P   T+++++       K  +A+ ++ EM+  G  P+     +L++ Y  AQ  +D +  
Sbjct: 302 PTVVTYNTLLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYATLLRIYAGAQYREDALSV 361

Query: 320 LNRLPELGI 328
              +   G+
Sbjct: 362 YKEMKGNGM 370


>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 692

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 293/442 (66%), Positives = 350/442 (79%), Gaps = 2/442 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  NV+ A  LYDRA+ E W +D   FSTLIK+Y  AGN+D CL VY+EMK +GVKPN+ 
Sbjct: 238 RTNNVDKAVNLYDRAKAENWSLDAVTFSTLIKMYSMAGNYDKCLEVYQEMKVLGVKPNVA 297

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL  M R+K+  Q K I+KEM  NG+SP++ TYASLL  Y RA+  ED L VY+EM
Sbjct: 298 TYNTLLGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYASLLEVYTRAQCSEDALGVYKEM 357

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  GM ++  LYN LLAMCADVGYTD A EIF +MKSS  CQPDSWTFSS+ITI S  GK
Sbjct: 358 KGNGMDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQPDSWTFSSLITIYSRSGK 417

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSE E M NEM+++GF+P +FV+TSLI+CYGKA+RTDDVV+   +L +LGI P+D FC C
Sbjct: 418 VSEVEGMLNEMIQSGFQPTIFVMTSLIRCYGKAKRTDDVVKIFKQLLDLGIVPNDHFCCC 477

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           LLNV+TQTPKEELGKL +C+EK+N+KLG VV+ L+EEQ+ +  F+KE  EL NSI  +VK
Sbjct: 478 LLNVLTQTPKEELGKLTDCIEKANTKLGTVVRYLVEEQESDEGFRKETLELLNSIDAEVK 537

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
           K  CNCLIDLCV LN+ E AC LL+LGL LE+Y +IQS+S TQWSLHLK LS+GAA+TAL
Sbjct: 538 KPLCNCLIDLCVKLNVPERACGLLDLGLMLEIYKNIQSKSQTQWSLHLKELSVGAAMTAL 597

Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
           H+WINDLS+ALESGE+ PPLLGINTG GKHKYSDKGLASVFES LKELNAPFH++  K G
Sbjct: 598 HVWINDLSEALESGEDLPPLLGINTGQGKHKYSDKGLASVFESRLKELNAPFHEA--KAG 655

Query: 518 WFLTTEAAAKSWLESRSSLVSV 539
           WFL T+AAAK WLESR S  S+
Sbjct: 656 WFLVTKAAAKLWLESRDSTESI 677



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 145/326 (44%), Gaps = 49/326 (15%)

Query: 36  YSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSY 95
           +SKT L     SLQ   +    K       P  K+ S  K+ IWVNP+SPRA  L++ S 
Sbjct: 31  HSKTLLHAPRFSLQPVNTLQDAKLDD----PDAKSPSLSKNSIWVNPRSPRAKHLQKNSP 86

Query: 96  DTRAGNV------------------EMAFGLYDRARNE------KWRIDPNA-------- 123
             R+ ++                  E+   L D              ++PN         
Sbjct: 87  HARSSSLTKLAKSLDSCNPTEQHVSEILNVLRDNVSERDAVFILNTMVNPNTALLALKYF 146

Query: 124 ------------FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
                       ++  +K+   + +F+G   +++EM   GVKP+ IT++ L++    +  
Sbjct: 147 QPKINPAKHVVLYNVTLKVLRESRDFEGAEKLFDEMLQRGVKPDNITFSTLVNCASVSGL 206

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
           P +   ++++M+  G  P+  T + ++ AY R    +  +++Y   K +   L    ++T
Sbjct: 207 PNKAVELFEKMSGFGCEPDGITCSGMVYAYARTNNVDKAVNLYDRAKAENWSLDAVTFST 266

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           L+ M +  G  D+  E++++MK     +P+  T+++++       K  +A+A+  EM   
Sbjct: 267 LIKMYSMAGNYDKCLEVYQEMKVL-GVKPNVATYNTLLGAMLRSKKHRQAKAIHKEMKSN 325

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVV 317
           G  P+     SL++ Y +AQ ++D +
Sbjct: 326 GVSPDFITYASLLEVYTRAQCSEDAL 351



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPN 155
           TRA   E A G+Y   +     +  + ++ L+ +    G  D  + ++ EMK+ G  +P+
Sbjct: 342 TRAQCSEDALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQPD 401

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             T+++L+    R+ +  +V+ +  EM  +G  P      SL+R YG+A+  +D + +++
Sbjct: 402 SWTFSSLITIYSRSGKVSEVEGMLNEMIQSGFQPTIFVMTSLIRCYGKAKRTDDVVKIFK 461

Query: 216 EMKEKGM 222
           ++ + G+
Sbjct: 462 QLLDLGI 468


>gi|356532361|ref|XP_003534742.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 646

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 282/444 (63%), Positives = 349/444 (78%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R GN +MA  LYDRA+ EKW +D   FS LIK++G +GN+DGCLNVY ++K +G KPN+
Sbjct: 202 ARTGNADMALRLYDRAKAEKWHVDTVVFSGLIKMHGMSGNYDGCLNVYNDLKVLGAKPNL 261

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL  MGRAKR    K IY+EM +NGL+PNW TYA+LL+AY RAR+  D L+VY+E
Sbjct: 262 VTYNALLYAMGRAKRARDAKAIYEEMINNGLTPNWPTYAALLQAYCRARFNRDALNVYKE 321

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MKEKG  L + LYN L  MCA+VG   EA +IFEDMKSS  C+PDS+T++S+I + S  G
Sbjct: 322 MKEKGKDLDILLYNMLFDMCANVGCEGEAVKIFEDMKSSGTCRPDSFTYASLINMYSSIG 381

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K+SE EAMFNEM+E+GFEPN+ VLTSL+ CYGKA+RTDDVV+  N+L +LGI+PD RFC 
Sbjct: 382 KISEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPDGRFCD 441

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           CLL  MTQ PKEELGKL  CVEK+N KLG V++ ++E+Q+  GDF+ EA+EL NS   D+
Sbjct: 442 CLLYAMTQVPKEELGKLTGCVEKANPKLGSVLRYIMEKQEGGGDFRMEASELLNSTEADI 501

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           KK+ CNCLIDLCVNL++ + A  LL+LGLTLE+YTDIQSRS  +WSLHLK LS+GAALTA
Sbjct: 502 KKSMCNCLIDLCVNLDVPDRARDLLDLGLTLEIYTDIQSRSQAKWSLHLKRLSVGAALTA 561

Query: 457 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKV 516
           L +WINDLSK LE GEE PPLLGINTG GKH++SDK L +VFE +LKEL APFH + +K 
Sbjct: 562 LSVWINDLSKTLELGEELPPLLGINTGGGKHRFSDKVLPTVFELYLKELKAPFHKAANKA 621

Query: 517 GWFLTTEAAAKSWLESRSSLVSVP 540
           GWFL T  AA SWL+SR S+V +P
Sbjct: 622 GWFLATSEAATSWLQSRGSVVVLP 645



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 128/307 (41%), Gaps = 45/307 (14%)

Query: 65  YPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDP--- 121
           Y + K+ S  K+ IWVNPKSPRA  L + SY TR+ ++       D     +  +     
Sbjct: 21  YDYAKSSSLSKTSIWVNPKSPRAKHLWKNSYHTRSSSLTKLARSLDSCNPTQQHVSEILK 80

Query: 122 -------------------NAFSTL----------------------IKLYGTAGNFDGC 140
                              N ++ L                      +KL+    +F+G 
Sbjct: 81  VLGDNVLEADAVFILNSMVNPYTALLAVEYFKQKIKHARHVILYNVTLKLFREVKDFEGA 140

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
             +++EM   GV PN+IT++ ++        P +    ++ M   G  P+ N  +S++ +
Sbjct: 141 EKLFDEMLQRGVNPNLITFSTMIICASVCSLPHKAVKWFEMMPSFGCEPDDNVCSSMIYS 200

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           Y R    +  L +Y   K +   +   +++ L+ M    G  D    ++ D+K     +P
Sbjct: 201 YARTGNADMALRLYDRAKAEKWHVDTVVFSGLIKMHGMSGNYDGCLNVYNDLKVL-GAKP 259

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           +  T+++++       +  +A+A++ EM+  G  PN     +L+Q Y +A+   D +   
Sbjct: 260 NLVTYNALLYAMGRAKRARDAKAIYEEMINNGLTPNWPTYAALLQAYCRARFNRDALNVY 319

Query: 321 NRLPELG 327
             + E G
Sbjct: 320 KEMKEKG 326



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           AE +F+EML+ G  PNL   +++I C          V+    +P  G  PDD  C  ++ 
Sbjct: 140 AEKLFDEMLQRGVNPNLITFSTMIICASVCSLPHKAVKWFEMMPSFGCEPDDNVCSSMIY 199

Query: 341 VMTQTPKEELG 351
              +T   ++ 
Sbjct: 200 SYARTGNADMA 210


>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 706

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 284/444 (63%), Positives = 344/444 (77%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR GN +MA  LYDRA+  KW +D   FS LIK+YG +GN+ GCLNVY +MK +G KPN+
Sbjct: 262 TRTGNTDMALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGNYVGCLNVYNDMKVLGAKPNL 321

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN LL  MGRAKR    K IY EM  NGLSPNW TYA+LL+AY RAR+  D L+VY+E
Sbjct: 322 TTYNALLYAMGRAKRARDAKAIYGEMISNGLSPNWPTYAALLQAYCRARFNRDALNVYKE 381

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MKEKG  L + LYN L  MCA+VG  DEA +IFE MKSS  C PDS+T++S+I + S  G
Sbjct: 382 MKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMKSSGTCPPDSFTYASLINMYSSIG 441

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K+ E EAMFNEM+E+GFEPN+ VLTSL+ CYGKA+RTDDVV+  N+L +LGI+PD RFC 
Sbjct: 442 KILEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPDGRFCD 501

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           CLL  MTQ PKEELGKL  CVEK+N KLG V++ ++E+Q+  GDF+ EA+ELFNS   DV
Sbjct: 502 CLLYAMTQVPKEELGKLSGCVEKANPKLGSVLRYIMEKQEGGGDFRTEASELFNSTEADV 561

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           KK+ CNCLIDLCV+L++ + A  LL+LGLTLE+Y DIQSRS  +WSLHLK LS+GAALTA
Sbjct: 562 KKSMCNCLIDLCVSLDVPDRARDLLDLGLTLEIYPDIQSRSQAKWSLHLKRLSVGAALTA 621

Query: 457 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKV 516
           L +WI+DLSKALE GEE PPLLGINTG GKH++SDK L +VFES+LKEL APFH   +K 
Sbjct: 622 LSVWISDLSKALELGEELPPLLGINTGGGKHRFSDKVLPTVFESYLKELKAPFHKDANKA 681

Query: 517 GWFLTTEAAAKSWLESRSSLVSVP 540
           GWFL T  AA SWL+SR S V++P
Sbjct: 682 GWFLATSEAATSWLQSRGSTVALP 705



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 126/306 (41%), Gaps = 45/306 (14%)

Query: 66  PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRI------ 119
           P+ K+    K+ IWVNPKSPRA  L + SY  R+ ++       D     +  +      
Sbjct: 82  PNAKSSPLSKTSIWVNPKSPRAKHLWKNSYHARSSSLTKLAKSLDSCNPTQEHVSEILKV 141

Query: 120 ------DPNA--------------------------------FSTLIKLYGTAGNFDGCL 141
                 +P+A                                ++  +KL+    +F+G  
Sbjct: 142 LGDSVLEPDAVFILNSMVNPYTALLAVEYFKQKVKSVRHVILYNVTLKLFRKVKDFEGAE 201

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
            +++EM   GV PN+IT++ ++        P +    ++ M   G  P+ N  +S++ AY
Sbjct: 202 KLFDEMLHRGVNPNLITFSTMISCASVCSLPHKAVKWFEMMPSFGCEPDNNVCSSMIYAY 261

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            R    +  L +Y   K     +   +++ L+ M    G       ++ DMK     +P+
Sbjct: 262 TRTGNTDMALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGNYVGCLNVYNDMKVL-GAKPN 320

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             T+++++       +  +A+A++ EM+  G  PN     +L+Q Y +A+   D +    
Sbjct: 321 LTTYNALLYAMGRAKRARDAKAIYGEMISNGLSPNWPTYAALLQAYCRARFNRDALNVYK 380

Query: 322 RLPELG 327
            + E G
Sbjct: 381 EMKEKG 386



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           AE +F+EML  G  PNL   +++I C          V+    +P  G  PD+  C  ++ 
Sbjct: 200 AEKLFDEMLHRGVNPNLITFSTMISCASVCSLPHKAVKWFEMMPSFGCEPDNNVCSSMIY 259

Query: 341 VMTQTPKEELG 351
             T+T   ++ 
Sbjct: 260 AYTRTGNTDMA 270


>gi|356577949|ref|XP_003557083.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 700

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 286/441 (64%), Positives = 344/441 (78%), Gaps = 3/441 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           + NV+ A  LYDRA  EKW +D   FS LIK+Y  AGN+D CL VY+EMK +G KPN++T
Sbjct: 249 SNNVDKAVSLYDRAIAEKWCLDAATFSALIKMYSMAGNYDKCLKVYQEMKVLGAKPNVVT 308

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN LL  M +A++  Q K IYKEM  NG+SP++ TYA LL  Y  A   E+ L VY+EMK
Sbjct: 309 YNTLLGAMLKAQKHRQAKAIYKEMKSNGVSPDFITYACLLEVYTIAHCSEEALGVYKEMK 368

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             GM ++  LYN LLAMCADVGYTD A EIF +MKSS  CQPDSWTFSSMIT+ S  GKV
Sbjct: 369 GNGMDMTADLYNKLLAMCADVGYTDRAAEIFYEMKSSGTCQPDSWTFSSMITMYSRSGKV 428

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
           SEAE M NEM+++GF+P +FVLTSL+ CYGKA+RTDDVV+   +L +LGI P+D FC  L
Sbjct: 429 SEAEGMLNEMIQSGFQPTIFVLTSLVHCYGKAKRTDDVVKVFKQLLDLGIVPNDHFCCSL 488

Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK 398
           LNV+TQTPKEE GKL +C+EK+N+KLG VVK L+EE+  +GDFKKEA+E  NSI   VK 
Sbjct: 489 LNVLTQTPKEEYGKLTDCIEKANTKLGSVVKYLVEEEG-DGDFKKEASEFLNSIDAKVKM 547

Query: 399 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 458
             CNCLIDLCV LN+ E AC LL+LGL LE+Y +IQS+S TQWSLHLK LS+GAA+TALH
Sbjct: 548 PLCNCLIDLCVKLNVPERACDLLDLGLVLEIYPNIQSKSQTQWSLHLKELSVGAAMTALH 607

Query: 459 IWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGW 518
           +WIN+LSKALESGE+ PPLLGINTG GK KYS+KGLA VFESHLKEL+APFH++  K GW
Sbjct: 608 VWINELSKALESGEDLPPLLGINTGKGKLKYSEKGLAGVFESHLKELHAPFHEA--KAGW 665

Query: 519 FLTTEAAAKSWLESRSSLVSV 539
           FL T+AAAKSWLESR S+  +
Sbjct: 666 FLVTKAAAKSWLESRGSIADL 686


>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 293/440 (66%), Positives = 337/440 (76%), Gaps = 37/440 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNV+MA  LYDRAR EKWRIDP  FSTLI++YG +GNFDGCLNV              
Sbjct: 258 RAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNV-------------- 303

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
                                Y+EM   G+ PN   Y +LL A GRA+      ++Y+EM
Sbjct: 304 ---------------------YEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEM 342

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK--SSENCQPDSWTFSSMITICSCR 275
              G+Q S   Y  LL       Y ++A  ++++MK   S NC PDSWTFSS+ITI SC 
Sbjct: 343 TNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGSGNCMPDSWTFSSLITIYSCS 402

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           GKVSEAEAM N MLEAGFEPN+FVLTSLIQCYGKA RTD+VVR  +RL EL ITPDDRFC
Sbjct: 403 GKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFC 462

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           GC+LNVMTQ+PKEELGKL++C++K+N KLG VVKLLLEEQ+ EG F+KEA+ELF+SIS D
Sbjct: 463 GCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASELFDSISAD 522

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           VKKAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y DIQS+SPTQWSLHLKSLSLGAALT
Sbjct: 523 VKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSLSLGAALT 582

Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           ALHIW+NDLSKA+E GEE P +LGINTGHGKHKYSDKGLASVFESHLKELNAPFH++PDK
Sbjct: 583 ALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPDK 642

Query: 516 VGWFLTTEAAAKSWLESRSS 535
           VGWFLTT+ AA SWLESRS+
Sbjct: 643 VGWFLTTKVAATSWLESRSA 662



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 163/368 (44%), Gaps = 58/368 (15%)

Query: 1   MASNLCYSTCSL------------FSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSL 48
           MA +LC S  SL            FS     R   +FSF + +SLS +S+T LQ   VSL
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSF-KPNSLSLHSRTFLQITHVSL 59

Query: 49  -----QETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR-AGNV 102
                QETQ ++ + +  N Q P  KT    KSYIWVNP+SPRASKL++ SYD R A  V
Sbjct: 60  EDPIPQETQKADAS-NPPNSQDPDRKT----KSYIWVNPRSPRASKLRQHSYDARYASLV 114

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++A  L      E+        S +++  G     D  L    E  A+ V  NM      
Sbjct: 115 KIAESLDSCEATEE------DVSQVLRCLG-----DKIL----EQDAVIVLNNMTNPETA 159

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT--YASLLRAYGRARYGEDTLSVYREMKEK 220
           L   G  ++               L P+     Y   L+ + + R  +    ++ EM E+
Sbjct: 160 LLAFGFFRK--------------RLKPSREVILYNVTLKVFRKCRNLDRAEKLFDEMLER 205

Query: 221 GMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           G++     ++T+++ CA V    ++A E FE M     C PD  T+S+MI      G V 
Sbjct: 206 GVKPDNITFSTIIS-CARVSSLPNKAVEWFEKMPEF-GCHPDDVTYSAMIDAYGRAGNVD 263

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +++      +  +    ++LI+ YG +   D  +     +  LG+ P+      LL
Sbjct: 264 MALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLL 323

Query: 340 NVMTQTPK 347
           + M +  +
Sbjct: 324 DAMGRAKR 331


>gi|356557983|ref|XP_003547289.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 707

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 282/441 (63%), Positives = 342/441 (77%), Gaps = 3/441 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           + NV+ A  LYDRA  EKW +D  AFS LIK+Y  AGN+D CL +Y+EMK +GVKPN++T
Sbjct: 253 SNNVDKAVSLYDRAIAEKWCLDAAAFSALIKMYSMAGNYDRCLKIYQEMKVLGVKPNVVT 312

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN LL  M +A++  Q K IYKEM  NG+SP++ TYA LL  Y  A Y ED L VY+EMK
Sbjct: 313 YNTLLGAMLKAEKHRQAKAIYKEMRSNGVSPDFITYACLLEVYTIAHYSEDALGVYKEMK 372

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             GM ++  LYN LLAM AD+GY D A EIF +M SS  CQPDSWTF+S+I I S  GKV
Sbjct: 373 GNGMDMTADLYNKLLAMYADMGYIDRAVEIFYEMNSSGTCQPDSWTFASLIAIYSRSGKV 432

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
           SEAE M NEM+++GF+P +FVLTSL+ CYGKA+RTDDVV+   +L ELGI P+D FC  L
Sbjct: 433 SEAEGMLNEMIQSGFQPTIFVLTSLVHCYGKAKRTDDVVKVFKQLLELGIVPNDHFCCSL 492

Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK 398
           LNV+TQ PKEELGKL +C+EK+N+KLG VVK L+EE+  +GDF+ E +E  NSI  +VK 
Sbjct: 493 LNVLTQAPKEELGKLTDCIEKANTKLGSVVKYLVEEEG-DGDFRNEVSEFLNSIDAEVKM 551

Query: 399 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 458
             CNCLIDLCV LN+ E AC LL+LGL LE+Y +IQS+S TQWSLHLK LS+GAA+TALH
Sbjct: 552 PLCNCLIDLCVKLNVPERACDLLDLGLMLEIYKNIQSKSQTQWSLHLKELSVGAAMTALH 611

Query: 459 IWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGW 518
           +WINDLSKALESGE+ PPLLGINTG GKHKYS+KGLA +FESHLKELNAPFH++  K GW
Sbjct: 612 VWINDLSKALESGEDLPPLLGINTGKGKHKYSEKGLAGIFESHLKELNAPFHEA--KAGW 669

Query: 519 FLTTEAAAKSWLESRSSLVSV 539
           FL T+A AKSWLESR S+  +
Sbjct: 670 FLATKAPAKSWLESRGSIADL 690



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 148/332 (44%), Gaps = 52/332 (15%)

Query: 31  DSLSFYSKT-SLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASK 89
           +S S++S+   L    +S  + ++    + +  PQ P  K+   P++ IWVNPKSPRA  
Sbjct: 41  NSFSYFSRHFKLPTFPLSHNKPKTLLQVQAANTPQDPDAKSSPLPQTSIWVNPKSPRAKH 100

Query: 90  LKEKSYDTRAGNV------------------EMAFGLYDRARNE---------------- 115
           L +  Y  R+ ++                  E+   L D                     
Sbjct: 101 LWKNPYHARSSSLTKLAKSLDSCNPTQQHVSEILRVLGDNVFESDAVVILNSMVNPYTAL 160

Query: 116 ------KWRIDPN----AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
                   +I P+     ++  +KL+  + +F+G   +++EM   GVKPN  T++ +++ 
Sbjct: 161 LAVNYFNQKIKPSRHVVLYNVTLKLFRASRDFEGAEKLFDEMLQRGVKPNNFTFSTMVNC 220

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
              A +P +   ++++M+  G  P+  T ++++ AY  +   +  +S+Y     +   L 
Sbjct: 221 ---ANKPVE---LFEKMSGFGYEPDGITCSAMVYAYALSNNVDKAVSLYDRAIAEKWCLD 274

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
              ++ L+ M +  G  D   +I+++MK     +P+  T+++++       K  +A+A++
Sbjct: 275 AAAFSALIKMYSMAGNYDRCLKIYQEMKVL-GVKPNVVTYNTLLGAMLKAEKHRQAKAIY 333

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            EM   G  P+      L++ Y  A  ++D +
Sbjct: 334 KEMRSNGVSPDFITYACLLEVYTIAHYSEDAL 365


>gi|212275714|ref|NP_001130387.1| uncharacterized protein LOC100191483 [Zea mays]
 gi|194689000|gb|ACF78584.1| unknown [Zea mays]
 gi|414865541|tpg|DAA44098.1| TPA: hypothetical protein ZEAMMB73_448674 [Zea mays]
          Length = 691

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/447 (60%), Positives = 342/447 (76%), Gaps = 6/447 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            AGN E A  LYDRAR EKW++DP   ST+IK++ T+GNFDG LNV+EEMKAIGV+PN++
Sbjct: 246 HAGNSEAALRLYDRARAEKWQLDPVICSTVIKVHSTSGNFDGALNVFEEMKAIGVRPNLV 305

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +LD MGRA RPW VKTI++EM D  + P+  TY  LL AY RARYGED ++VYR M
Sbjct: 306 VYNTMLDAMGRALRPWVVKTIHREMVDQQVQPSRATYCCLLHAYTRARYGEDAMAVYRLM 365

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--ENCQPDSWTFSSMITICSCR 275
           K++ M + V LYN LL+MCAD+GY DEA EIF DMK+S   + +PDSW++SSM+T+ S  
Sbjct: 366 KDEAMGIDVMLYNMLLSMCADIGYVDEAEEIFRDMKASMGAHSKPDSWSYSSMVTLYSST 425

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
             V  AE + NEM+EAGF+PN+FVLTSLI+CYGK  RTDDVVR+   L +LGI PDDRFC
Sbjct: 426 ANVLSAEGILNEMVEAGFKPNIFVLTSLIRCYGKVGRTDDVVRSFGMLQDLGIIPDDRFC 485

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           GCLL+V   TP EELGK++ C+E+SN +LG VVKLL++    E  F++ A EL  S    
Sbjct: 486 GCLLSVAANTPAEELGKVISCIERSNVQLGAVVKLLVDRSSSE-SFREAARELLRSSRGV 544

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           VK  YCNCL+DLCVNLN +E AC LL+    L +Y +IQ+R+ TQWSLHL+ LS+GAALT
Sbjct: 545 VKMPYCNCLMDLCVNLNQMEKACALLDAAQQLGIYANIQTRTQTQWSLHLRGLSVGAALT 604

Query: 456 ALHIWINDLSKALESGEE-FPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 514
            LH+W+NDL  +L++G E  PPLLGI+TG GK+ YSD+GLA++FE+HLKEL+APFH++PD
Sbjct: 605 TLHVWMNDLYTSLQTGNEGLPPLLGIHTGQGKNTYSDRGLAAMFEAHLKELDAPFHEAPD 664

Query: 515 KVGWFLTTEAAAKSWLESR--SSLVSV 539
           K GWFLTT  AAK WLES+  S LV+V
Sbjct: 665 KAGWFLTTNVAAKQWLESKAASELVTV 691



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 89/181 (49%), Gaps = 2/181 (1%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           ++ EM   GV+P+  T++ ++          +    + +M + G SP+  TY++++ AYG
Sbjct: 186 LWAEMLRDGVQPDNATFSTVISCARACGLHSKAVEWFDKMPEFGCSPDMLTYSAVIDAYG 245

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            A   E  L +Y   + +  QL   + +T++ + +  G  D A  +FE+MK+    +P+ 
Sbjct: 246 HAGNSEAALRLYDRARAEKWQLDPVICSTVIKVHSTSGNFDGALNVFEEMKAI-GVRPNL 304

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             +++M+       +    + +  EM++   +P+      L+  Y +A+  +D + A+ R
Sbjct: 305 VVYNTMLDAMGRALRPWVVKTIHREMVDQQVQPSRATYCCLLHAYTRARYGEDAM-AVYR 363

Query: 323 L 323
           L
Sbjct: 364 L 364



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 41/237 (17%)

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           Y  +L+   + R   +T +++ EM   G+Q     ++T+++     G   +A E F+ M 
Sbjct: 167 YNVVLKLLRKKRLWSETEALWAEMLRDGVQPDNATFSTVISCARACGLHSKAVEWFDKMP 226

Query: 254 SSENCQPDSWTFSSMI----------------------------TICSCRGKVSEAEA-- 283
               C PD  T+S++I                             ICS   KV       
Sbjct: 227 EF-GCSPDMLTYSAVIDAYGHAGNSEAALRLYDRARAEKWQLDPVICSTVIKVHSTSGNF 285

Query: 284 -----MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR-LPELGITPDDRFCGC 337
                +F EM   G  PNL V  +++   G+A R   VV+ ++R + +  + P      C
Sbjct: 286 DGALNVFEEMKAIGVRPNLVVYNTMLDAMGRALRP-WVVKTIHREMVDQQVQPSRATYCC 344

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL--LLEEQDIEGDFKKEATELFNSI 392
           LL+  T+    E    V  + K +  +G  V L  +L     +  +  EA E+F  +
Sbjct: 345 LLHAYTRARYGEDAMAVYRLMK-DEAMGIDVMLYNMLLSMCADIGYVDEAEEIFRDM 400


>gi|242036493|ref|XP_002465641.1| hypothetical protein SORBIDRAFT_01g042790 [Sorghum bicolor]
 gi|241919495|gb|EER92639.1| hypothetical protein SORBIDRAFT_01g042790 [Sorghum bicolor]
          Length = 691

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/447 (59%), Positives = 339/447 (75%), Gaps = 5/447 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGN E A  LYDRAR EKW++DP   ST+IK++  +GNFDG LNV+EEMKA GVKPN++
Sbjct: 245 RAGNSEAALRLYDRARAEKWQLDPVICSTVIKVHSISGNFDGALNVFEEMKATGVKPNLV 304

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +LD MGRA RPW VKTI++EM D  + P+  TY  LL AY RARYGED ++VYR M
Sbjct: 305 VYNTMLDAMGRALRPWVVKTIHREMVDQQVQPSRATYCCLLHAYTRARYGEDAMAVYRLM 364

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICSCR 275
           K++ M + V LYN LL+MCAD+GY DEA EIF DMK+S +   +PDSW++SSM+T+ S  
Sbjct: 365 KDEAMDIDVMLYNMLLSMCADIGYVDEAEEIFRDMKASMDACSKPDSWSYSSMVTLYSST 424

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
             V  AE + NEM+EAGF+PN+FVLTSLI+CYGK  RTDDVV++   L +L I PDDRFC
Sbjct: 425 ANVLGAEGILNEMVEAGFKPNIFVLTSLIRCYGKVGRTDDVVKSFGMLQDLCIIPDDRFC 484

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           GCLL+V   TP EELGK++ C+E SN++LG VVKLL++       F++ A+EL       
Sbjct: 485 GCLLSVAANTPVEELGKVISCIETSNAQLGAVVKLLVDRSSSPESFREAASELLGCSRGV 544

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           VK  YCNCL+DLCVNLN +E AC LL+    L +Y +IQ+R+ TQWSLHL+ LS+GAALT
Sbjct: 545 VKMPYCNCLMDLCVNLNQMEKACALLDAAQQLSIYANIQTRTQTQWSLHLRGLSVGAALT 604

Query: 456 ALHIWINDLSKALESGEE-FPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 514
            LH+W+NDL  +L++G E  PPLLGI+TG GK+ YSD+GLA++FE+HLKEL+APFH++PD
Sbjct: 605 TLHVWMNDLYTSLQTGNEGLPPLLGIHTGQGKNTYSDRGLAAMFEAHLKELDAPFHEAPD 664

Query: 515 KVGWFLTTEAAAKSWLESR--SSLVSV 539
           K GWFLTT  AAK WLE++  S LV+V
Sbjct: 665 KAGWFLTTSVAAKHWLETKAASELVTV 691



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 91/181 (50%), Gaps = 2/181 (1%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           ++ EM   GV+P+  T++ ++          +    + +M + G SP+  TY++++ AYG
Sbjct: 185 LWAEMLRDGVQPDNATFSTVISCARACGLHSKAVEWFDKMPEFGCSPDMLTYSAVIDAYG 244

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           RA   E  L +Y   + +  QL   + +T++ + +  G  D A  +FE+MK++   +P+ 
Sbjct: 245 RAGNSEAALRLYDRARAEKWQLDPVICSTVIKVHSISGNFDGALNVFEEMKAT-GVKPNL 303

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             +++M+       +    + +  EM++   +P+      L+  Y +A+  +D + A+ R
Sbjct: 304 VVYNTMLDAMGRALRPWVVKTIHREMVDQQVQPSRATYCCLLHAYTRARYGEDAM-AVYR 362

Query: 323 L 323
           L
Sbjct: 363 L 363


>gi|297600539|ref|NP_001049380.2| Os03g0215900 [Oryza sativa Japonica Group]
 gi|108706847|gb|ABF94642.1| RSP67.2, putative, expressed [Oryza sativa Japonica Group]
 gi|255674311|dbj|BAF11294.2| Os03g0215900 [Oryza sativa Japonica Group]
          Length = 676

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 259/446 (58%), Positives = 344/446 (77%), Gaps = 4/446 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG+ E A  LYDRAR EKW++DP   +T+I+++ ++GNFDG LNV+EEMKA GVKPN++
Sbjct: 231 RAGDAETALRLYDRARAEKWQLDPVICATVIRVHSSSGNFDGALNVFEEMKAAGVKPNLV 290

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +LD MGRA RPW VKTI++E+      PN  TY  LL AY RARYGED ++VYR M
Sbjct: 291 VYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYRVM 350

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ--PDSWTFSSMITICSCR 275
           K++ M + V LYN LL+MCAD+GY +EA EIF DMK+S + +  PDSW++SSM+T+ SC 
Sbjct: 351 KDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCT 410

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G V+ AE + NEM+EAGF+PN+F+LTSLI+CYGKA RTDDVVR+   L +LGITPDDRFC
Sbjct: 411 GNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLEDLGITPDDRFC 470

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           GCLL V   TP +ELGK++ C+++S+++LG VV+LL++        ++ A EL       
Sbjct: 471 GCLLTVAAGTPADELGKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLREAAGELLGGARGV 530

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           V+  YCNCL+DL VNL+ +E AC LL++ L L +Y+++Q+R+ TQWSLHL+ LS+GAALT
Sbjct: 531 VRMPYCNCLMDLAVNLSQMEKACALLDVALRLGIYSNVQTRTQTQWSLHLRGLSVGAALT 590

Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
            LH+W++DL  AL++G+E PPLLGI+TG GK+ YS KGLA+VFESHLKEL+APFH++PDK
Sbjct: 591 TLHVWMSDLYAALQAGDELPPLLGIHTGQGKNTYSYKGLATVFESHLKELDAPFHEAPDK 650

Query: 516 VGWFLTTEAAAKSWLESRSS--LVSV 539
            GWFLTT  AA+ WLE++ S  LV+V
Sbjct: 651 AGWFLTTSVAARHWLETKKSAELVAV 676



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 123/298 (41%), Gaps = 39/298 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T A    +   L+   RN + R +   ++  +K       +     ++EEM   GV+P+ 
Sbjct: 125 TSARPAAVVLALWWFLRNAEVRKEVILYNVALKALRKRRRWSDAEALWEEMLREGVQPDN 184

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T++ ++        P +    +++M D G SP+  TY++++ AYGRA   E  L +Y  
Sbjct: 185 ATFSTVISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRAGDAETALRLYDR 244

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + +  QL   +  T++ + +  G  D A  +FE+MK+                      
Sbjct: 245 ARAEKWQLDPVICATVIRVHSSSGNFDGALNVFEEMKA---------------------- 282

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR-LPELGITPDDRFC 335
                         AG +PNL V  +++   G+A R   VV+ ++R L      P+    
Sbjct: 283 --------------AGVKPNLVVYNTVLDAMGRAMRP-WVVKTIHRELVSQEAVPNKATY 327

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNS-KLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
            CLL+  T+    E    V  V K     +  V+  +L     +  + +EA E+F  +
Sbjct: 328 CCLLHAYTRARYGEDAMAVYRVMKDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDM 385


>gi|357113402|ref|XP_003558492.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Brachypodium distachyon]
          Length = 688

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 263/446 (58%), Positives = 338/446 (75%), Gaps = 4/446 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG+ +MA  LYDRAR EK ++DP   +T+IK++ T+GNF G LNV+EEMKA+GVKPN++
Sbjct: 243 RAGDADMALRLYDRARAEKCQLDPVICATVIKVHSTSGNFAGALNVFEEMKAVGVKPNLV 302

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +LD MGRA RPW VKTI++EM    + PN  TY  LL+AY RARYGED + VYR M
Sbjct: 303 VYNTVLDAMGRAMRPWVVKTIHREMVSQQVQPNRATYCCLLQAYTRARYGEDAMVVYRMM 362

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ--PDSWTFSSMITICSCR 275
           K++ M + V LYN LL+MCAD+GY DEA EIF DMK+  + +  PDSWT+SSM+T+ SC 
Sbjct: 363 KDEVMDIDVVLYNMLLSMCADIGYIDEAEEIFRDMKAHTDTRFKPDSWTYSSMVTLYSCT 422

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G V  AE +  EM EAGF+PN+F+LTSLI+CYGKA  TDDVVR+   L +L I PDDRFC
Sbjct: 423 GNVLGAEGILKEMAEAGFKPNIFILTSLIRCYGKAGHTDDVVRSFGMLEDLNIRPDDRFC 482

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           GCLL V   TP EELGK+V+C+++SN++LG VVKLL++       F++ A  + + +   
Sbjct: 483 GCLLTVAADTPVEELGKVVDCIDRSNAQLGTVVKLLVDRNASTESFREAARGILSGVRGV 542

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           VK  YCNCL+DLCVNL   E AC LL++ L L+VY ++Q+++ TQWSLHL+ LS+GAALT
Sbjct: 543 VKVPYCNCLMDLCVNLGQTEKACALLDVALQLDVYRNVQTKTQTQWSLHLRGLSVGAALT 602

Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
            LH+W+NDL   L+SGEE PPLLGI+TG G++ YSDKGLAS FESHLKE++APFH +PDK
Sbjct: 603 TLHVWMNDLRSTLQSGEELPPLLGIHTGEGRNMYSDKGLASAFESHLKEIDAPFHAAPDK 662

Query: 516 VGWFLTTEAAAKSWLESR--SSLVSV 539
            GWFLTT  AAK WL+++  S LV+V
Sbjct: 663 AGWFLTTSVAAKHWLKAKESSELVAV 688



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 86/175 (49%), Gaps = 1/175 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           +++EM   GV+P+  T++ ++        P +    +++M   G SP+  TY++++ AYG
Sbjct: 183 LWDEMLRDGVQPDNTTFSTVISCARACGLPRKAVEWFEKMPGLGCSPDMLTYSAVIDAYG 242

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           RA   +  L +Y   + +  QL   +  T++ + +  G    A  +FE+MK+    +P+ 
Sbjct: 243 RAGDADMALRLYDRARAEKCQLDPVICATVIKVHSTSGNFAGALNVFEEMKAV-GVKPNL 301

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             +++++       +    + +  EM+    +PN      L+Q Y +A+  +D +
Sbjct: 302 VVYNTVLDAMGRAMRPWVVKTIHREMVSQQVQPNRATYCCLLQAYTRARYGEDAM 356



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 39/236 (16%)

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           Y  +L+A  + R   DT +++ EM   G+Q   T ++T+++     G   +A E FE M 
Sbjct: 164 YNVVLKALRKRRRWSDTEALWDEMLRDGVQPDNTTFSTVISCARACGLPRKAVEWFEKMP 223

Query: 254 SSENCQPDSWTFSSMI----------------------------TIC-------SCRGKV 278
               C PD  T+S++I                             IC       S  G  
Sbjct: 224 GL-GCSPDMLTYSAVIDAYGRAGDADMALRLYDRARAEKCQLDPVICATVIKVHSTSGNF 282

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR-LPELGITPDDRFCGC 337
           + A  +F EM   G +PNL V  +++   G+A R   VV+ ++R +    + P+     C
Sbjct: 283 AGALNVFEEMKAVGVKPNLVVYNTVLDAMGRAMRP-WVVKTIHREMVSQQVQPNRATYCC 341

Query: 338 LLNVMTQTPKEELGKLVECVEKSNS-KLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           LL   T+    E   +V  + K     +  V+  +L     +  +  EA E+F  +
Sbjct: 342 LLQAYTRARYGEDAMVVYRMMKDEVMDIDVVLYNMLLSMCADIGYIDEAEEIFRDM 397



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 216 EMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           E++ KG+     LYN +L A+     ++D   E   D    +  QPD+ TFS++I+    
Sbjct: 156 EVRNKGI-----LYNVVLKALRKRRRWSDT--EALWDEMLRDGVQPDNTTFSTVISCARA 208

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G   +A   F +M   G  P++   +++I  YG+A   D  +R  +R        D   
Sbjct: 209 CGLPRKAVEWFEKMPGLGCSPDMLTYSAVIDAYGRAGDADMALRLYDRARAEKCQLDPVI 268

Query: 335 CGCLLNV 341
           C  ++ V
Sbjct: 269 CATVIKV 275


>gi|125585400|gb|EAZ26064.1| hypothetical protein OsJ_09917 [Oryza sativa Japonica Group]
          Length = 552

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 246/431 (57%), Positives = 329/431 (76%), Gaps = 7/431 (1%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           RN  W +     +T+I+++ ++GNFDG LNV+EEMKA GVKPN++ YN +LD MGRA RP
Sbjct: 125 RNGSWTV---ICATVIRVHSSSGNFDGALNVFEEMKAAGVKPNLVVYNTVLDAMGRAMRP 181

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
           W VKTI++E+      PN  TY  LL AY RARYGED ++VYR MK++ M + V LYN L
Sbjct: 182 WVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYRVMKDEVMDIDVVLYNML 241

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQ--PDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           L+MCAD+GY +EA EIF DMK+S + +  PDSW++SSM+T+ SC G V+ AE + NEM+E
Sbjct: 242 LSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCTGNVAGAEGILNEMVE 301

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 350
           AGF+PN+F+LTSLI+CYGKA RTDDVVR+   L +LGITPDDRFCGCLL V   TP +EL
Sbjct: 302 AGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLEDLGITPDDRFCGCLLTVAAGTPADEL 361

Query: 351 GKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 410
           GK++ C+++S+++LG VV+LL++        ++ A EL       V+  YCNCL+DL VN
Sbjct: 362 GKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLREAAGELLGGARGVVRMPYCNCLMDLAVN 421

Query: 411 LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 470
           L+ +E AC LL++ L L +Y+++Q+R+ TQWSLHL+ LS+GAALT LH+W++DL  AL++
Sbjct: 422 LSQMEKACALLDVALRLGIYSNVQTRTQTQWSLHLRGLSVGAALTTLHVWMSDLYAALQA 481

Query: 471 GEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 530
           G+E PPLLGI+TG GK+ YS KGLA+VFESHLKEL+APFH++PDK GWFLTT  AA+ WL
Sbjct: 482 GDELPPLLGIHTGQGKNTYSYKGLATVFESHLKELDAPFHEAPDKAGWFLTTSVAARHWL 541

Query: 531 ESRSS--LVSV 539
           E++ S  LV+V
Sbjct: 542 ETKKSAELVAV 552



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            L+++  ++   ++  V LYN  L          +A  ++E+M   E  QPD+ TFS++I
Sbjct: 9   VLALWWFLRNAEVRKEVILYNVALKALRKRRRWSDAEALWEEMLR-EGVQPDNATFSTVI 67

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           +     G   +A   F +M + G  P++   +++I  YG+A+   D
Sbjct: 68  SCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRARGRRD 113


>gi|218192336|gb|EEC74763.1| hypothetical protein OsI_10529 [Oryza sativa Indica Group]
          Length = 397

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/397 (58%), Positives = 305/397 (76%), Gaps = 4/397 (1%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           MKA GVKPN++ YN +LD MGRA RPW VKTI++E+      PN  TY  LL AY RARY
Sbjct: 1   MKAAGVKPNLVVYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARY 60

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ--PDSWT 264
           GED ++VYR MK++ M + V LYN LL+MCAD+GY +EA EIF DMK+S + +  PDSW+
Sbjct: 61  GEDAMAVYRVMKDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWS 120

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           +SSM+T+ SC G V+ AE + NEM+EAGF+PN+F+LTSLI+CYGKA RTDDVVR+   L 
Sbjct: 121 YSSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLE 180

Query: 325 ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384
           +LGITPDDRFCGCLL V   TP +ELGK++ C+++S+++LG VV+LL++        ++ 
Sbjct: 181 DLGITPDDRFCGCLLTVAAGTPADELGKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLREA 240

Query: 385 ATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLH 444
           A EL       V+  YCNCL+DL VNL+ +E AC LL++ L L +Y+++Q+R+ TQWSLH
Sbjct: 241 AGELLGGARGVVRMPYCNCLMDLAVNLSQMEKACALLDVALRLGIYSNVQTRTQTQWSLH 300

Query: 445 LKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKE 504
           L+ LS+GAALT LH+W++DL  AL++G+E PPLLGI+TG GK+ YS KGLA+VFESHLKE
Sbjct: 301 LRGLSVGAALTTLHVWMSDLYAALQAGDELPPLLGIHTGQGKNTYSYKGLATVFESHLKE 360

Query: 505 LNAPFHDSPDKVGWFLTTEAAAKSWLESRSS--LVSV 539
           L+APFH++PDK GWFLTT  AA+ WLE++ S  LV+V
Sbjct: 361 LDAPFHEAPDKAGWFLTTSVAARHWLETKKSAELVAV 397



 Score = 45.4 bits (106), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           +M   +  R++ + W     ++S+++ LY   GN  G   +  EM   G KPN+    +L
Sbjct: 105 DMKASMDSRSKPDSW-----SYSSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILTSL 159

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +   G+A R   V   +  + D G++P+
Sbjct: 160 IRCYGKAGRTDDVVRSFAMLEDLGITPD 187


>gi|357476703|ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509692|gb|AES90834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 715

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/444 (41%), Positives = 287/444 (64%), Gaps = 4/444 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE    L++R R   W+ DP  FS L K++G AG++DG   V +EMK++GV+PN++
Sbjct: 272 RLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLV 331

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LL+ MG+A +P   +++++EM D+G++PN  T  ++++ YG+AR+ +D L +++ M
Sbjct: 332 VYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRM 391

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G  +   LYNTLL MCADVG  +EA  +F DMK SE+C+PDSW++++M+ I    G 
Sbjct: 392 KENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGA 451

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A  +F EM + G E N+   T LIQC GKA   DD+V+  +   E G+ PDDR CGC
Sbjct: 452 VDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDISVERGVKPDDRLCGC 511

Query: 338 LLNV--MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           LL+V  ++Q  K++  K++ C++++N KL   ++L+++E+      K+E   + ++   +
Sbjct: 512 LLSVVSLSQGSKDQ-EKVLACLQRANPKLVAFIQLIVDEETSFETVKEEFKAIMSNAVVE 570

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           V++ +CNCLID+C N +L+E A +LL LG     Y  + +++  +W L +++LS+GAALT
Sbjct: 571 VRRPFCNCLIDICRNKDLVERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAALT 630

Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           AL  W+  L+K ++  E  P L    TG G HK++ +GL   F SHL++L APF  S DK
Sbjct: 631 ALEEWMTTLTKIVKREEALPDLFLAQTGTGAHKFA-QGLNISFASHLRKLAAPFRQSEDK 689

Query: 516 VGWFLTTEAAAKSWLESRSSLVSV 539
           VG F+ T+    SW++S S   S+
Sbjct: 690 VGCFIATKEDLISWVQSNSPSASI 713



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 119/272 (43%), Gaps = 12/272 (4%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEM--TDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           P+ +T  N L  +  + RPWQ   ++     T N L      Y   +++    R      
Sbjct: 152 PSSLTRGNALLVLN-SLRPWQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIE 210

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            +  +M + G++L    Y+T+++        D+A   FE M  +    PD  TFS+++ +
Sbjct: 211 ELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKT-GLMPDEVTFSAILDV 269

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +  GKV E   +F      G++P+    + L + +G+A   D +   L  +  LG+ P+
Sbjct: 270 YARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPN 329

Query: 332 DRFCGCLLNVMTQTPKEELGK-LVECVEKSNSKLGYVVKLLLEEQDIEGD--FKKEATEL 388
                 LL  M +  K    + L E  E  +S +    K L     I G   + K+A EL
Sbjct: 330 LVVYNTLLEAMGKAGKPGFARSLFE--EMIDSGIAPNEKTLTAVIKIYGKARWSKDALEL 387

Query: 389 FNSISKD---VKKAYCNCLIDLCVNLNLLENA 417
           +  + ++   +     N L+++C ++ L+E A
Sbjct: 388 WKRMKENGWPMDFILYNTLLNMCADVGLIEEA 419


>gi|224089785|ref|XP_002308813.1| predicted protein [Populus trichocarpa]
 gi|222854789|gb|EEE92336.1| predicted protein [Populus trichocarpa]
          Length = 270

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/244 (70%), Positives = 202/244 (82%), Gaps = 1/244 (0%)

Query: 111 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
            AR  +WR+D   FSTLI++Y  AGNFDG LNV EEMKA+GVKPN++ YN LLD MGRAK
Sbjct: 4   HARTGEWRLDATTFSTLIRIYKVAGNFDGYLNVSEEMKALGVKPNLVIYNILLDAMGRAK 63

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
           RPWQVK  Y+++ DNGLSP++ T+A+LL AYGRARYG+D   +YREMKEKG+ L+V LYN
Sbjct: 64  RPWQVKKFYQDIIDNGLSPSFVTFAALLHAYGRARYGDDAFKIYREMKEKGLGLNVVLYN 123

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           ++LAMCAD+G+ D+A EIFEDMKSS   +PDSWTFSSMITI SC GKVSE E   NEM E
Sbjct: 124 SILAMCADLGHVDKAVEIFEDMKSS-GIKPDSWTFSSMITIFSCCGKVSEVENTLNEMFE 182

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 350
           AGF+PN+F+LTSLIQCYGKAQR DDVV+  NR+ EL ITPDDRFCGCLLNVMTQTP EEL
Sbjct: 183 AGFQPNIFILTSLIQCYGKAQRIDDVVKTFNRIFELVITPDDRFCGCLLNVMTQTPNEEL 242

Query: 351 GKLV 354
            KLV
Sbjct: 243 SKLV 246



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 64/122 (52%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA   + AF +Y   + +   ++   +++++ +    G+ D  + ++E+MK+ G+KP+  
Sbjct: 96  RARYGDDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSW 155

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+++++       +  +V+    EM + G  PN     SL++ YG+A+  +D +  +  +
Sbjct: 156 TFSSMITIFSCCGKVSEVENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVKTFNRI 215

Query: 218 KE 219
            E
Sbjct: 216 FE 217


>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
 gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 711

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 182/438 (41%), Positives = 277/438 (63%), Gaps = 3/438 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +++G VE    LY+RA    W+ D  AFS L K++G AG++DG   V +EMK++ VKPN+
Sbjct: 267 SKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNV 326

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + YN LL+ MGRA +P   ++++ EM + GL+PN  T  +L++ YG+AR+  D L ++ E
Sbjct: 327 VVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEE 386

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK K   +   LYNTLL MCAD+G  +EA  +F DMK S  C+PD++++++M+ I    G
Sbjct: 387 MKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGG 446

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  +A  +F EML+AG + N+   T L+QC GKA+R DDVV   +   + G+ PDDR CG
Sbjct: 447 KAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCG 506

Query: 337 CLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           CLL+VM      E+  K++ C+E++N KL   V L+++E+      K+E   + N+   +
Sbjct: 507 CLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQVE 566

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
            ++ +CNCLID+C   N  E A +LL LG    +Y  + +++  +WSL ++SLS+GAA T
Sbjct: 567 ARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAET 626

Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           AL  W+  L+  ++  EE P L    TG G H++S +GLA+ F  HL++L+APF  S D+
Sbjct: 627 ALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DR 684

Query: 516 VGWFLTTEAAAKSWLESR 533
            G F+ T+    SWLES+
Sbjct: 685 PGIFVATKEDLVSWLESK 702



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 16/297 (5%)

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           EM   GV+ + ITY+ ++    R     +    ++ M   GL P+  TY+++L  Y ++ 
Sbjct: 211 EMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSG 270

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             E+ LS+Y      G +     ++ L  M  + G  D    + ++MKS  + +P+   +
Sbjct: 271 KVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSM-DVKPNVVVY 329

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++++      GK   A ++FNEMLEAG  PN   LT+L++ YGKA+   D ++    +  
Sbjct: 330 NTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKA 389

Query: 326 LGITPDDRFCGCLLNVMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 380
                D      LLN+      EE        + E V+       Y   L     +I G 
Sbjct: 390 KKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAML-----NIYGS 444

Query: 381 FKK--EATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432
             K  +A ELF  + K    V    C CL+        +++   + +L +   V  D
Sbjct: 445 GGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPD 501


>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/448 (41%), Positives = 281/448 (62%), Gaps = 6/448 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G VE    LY+R R   W+ DP AF+ L K++G AG++DG   V +EMK++GV+PN++
Sbjct: 281 KLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLV 340

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LL+ MG+A +P   +++++EM  +G+ P+  T  +L++ YG+AR+  D L ++  M
Sbjct: 341 VYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVKIYGKARWARDALELWERM 400

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G  +   LYNTLL+MCAD+G  +EA ++FEDMK SE+C+PDSW++++M+ I    G 
Sbjct: 401 RSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCRPDSWSYTAMLNIYGSGGN 460

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V  A  +F+EM E G + N+   T L QC G+A+R DD+V+      E G+ PDDR CGC
Sbjct: 461 VDRAMQLFDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKVFEVSLERGVKPDDRLCGC 520

Query: 338 LLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           LL+V++     E+  K++ C++++N KL   V LL E+   E   K+E   +    + + 
Sbjct: 521 LLSVVSFCEGAEDANKVLACLQQANPKLVAFVNLLEEKISFEA-LKEEFRGILTDTAVEA 579

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           ++ +CNCLID+C N +L E A +LL LG    +Y  + +R+  +W L ++SLS+GAA TA
Sbjct: 580 RRPFCNCLIDICRNRSLHERAHELLYLGTLYGLYPGLHNRTADEWCLDVRSLSVGAAHTA 639

Query: 457 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKV 516
           L  W+  LSK ++  E  P     NTG G HK+S +GLAS F SH+K+L APF  S +K 
Sbjct: 640 LEEWMGTLSKIVQREEALPEAFSANTGTGTHKFS-QGLASAFASHVKKLAAPFTQSEEKA 698

Query: 517 GWFLTTEAAAKSWLESRSSLVSVPAKVT 544
           G F+ T     SW++SR   +  PA V 
Sbjct: 699 GCFVATREDLVSWVQSR---ILSPAAVV 723



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 146/359 (40%), Gaps = 32/359 (8%)

Query: 72  SSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 131
           S PKS  W+NP  P+ S L                    R +   +  +P      +KL+
Sbjct: 99  SKPKS-TWINPTKPKPSVLS-----------------LQRHKRHNYSYNPQIRD--LKLF 138

Query: 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPN 190
               N     +  E +  +   P+  T +N L  +   K PW +    +  +    L P 
Sbjct: 139 AKKINESESSDESEFLAVLEQIPHPPTRDNALLLLNSLK-PWPKTYLFFNWIKTQNLFPM 197

Query: 191 WNTYASL-LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
              + ++ +++    R  +    +  EM   G++L    Y+T++         D+A + F
Sbjct: 198 ETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIITCAKRCNLFDKAVKWF 257

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           E M  +    PD  T+S+++ + +  GKV E  +++     +G++P+      L + +G+
Sbjct: 258 ERMYKT-GLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGE 316

Query: 310 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVECVEKSNSKLGYVV 368
           A   D +   L  +  LG+ P+      LL  M +  K  L + L E  E   S +    
Sbjct: 317 AGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFE--EMVGSGVIPDA 374

Query: 369 KLLLEEQDIEGD--FKKEATELFNSISKD---VKKAYCNCLIDLCVNLNLLENACKLLE 422
           K L     I G   + ++A EL+  +  +   +     N L+ +C +L L E A KL E
Sbjct: 375 KTLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFE 433


>gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 712

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 181/440 (41%), Positives = 284/440 (64%), Gaps = 4/440 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE    LY+R R   W+ DP  FS L K++G AG++DG   V++EM+++GV+PN++
Sbjct: 271 RLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLV 330

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LL+ MG+A +P   + +++EM ++G+ PN  T  ++++ YG+AR+  D L +++ M
Sbjct: 331 VYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYGKARWSRDALELWQRM 390

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G  +   LYNTLL MCADVG  +EA  +F DMK S +C+PDSW++++M+ I   +G 
Sbjct: 391 KENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCKPDSWSYTAMLNIYGSQGD 450

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A  +F+EM + G E N+   T LIQC G+A   DD+VR  +   E GI PDDR CGC
Sbjct: 451 VDKAMKLFDEMCKLGVELNVMGFTCLIQCLGRAMEFDDLVRVFDISVERGIKPDDRLCGC 510

Query: 338 LLNV--MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           LL+V  ++Q   +E  K++ C++++N KL   + L+ +E+      K+E   + ++ + +
Sbjct: 511 LLSVVSLSQGSNDE-EKVLACLQQANPKLVAFIHLIEDEKTSFETVKEEFKGIMSNAAVE 569

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           V++ +CNCLID+C N +LLE A +LL LG    +Y  + +++  +W L ++SLS+GAALT
Sbjct: 570 VRRPFCNCLIDICRNKDLLERAHELLYLGTLYGLYPGLHNKTVEEWCLDVRSLSVGAALT 629

Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           AL  W+  L+K ++  E  P L    TG G HK++ +GL   F SHL++L APF  S +K
Sbjct: 630 ALEEWMWTLTKIVKREETLPELFLAQTGTGAHKFA-QGLNISFASHLRKLAAPFKQSEEK 688

Query: 516 VGWFLTTEAAAKSWLESRSS 535
           VG F+ +     SW++S+S+
Sbjct: 689 VGCFIASREDLVSWVQSKST 708



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 148/360 (41%), Gaps = 45/360 (12%)

Query: 72  SSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 131
           S PKS  WVNP   + S L   S   +      +  L D  R  +            KL 
Sbjct: 90  SKPKS-TWVNPTKAKRSVLS--SERQKRATYSYSPQLRDLKRFAQ------------KLN 134

Query: 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE--MTDNGLSP 189
            +  + D  L   EE+      P  I+  N L  +   K PWQ   ++     T N L  
Sbjct: 135 ESGSSEDEFLACLEEI------PRPISRENALLILNTLK-PWQKTNLFLNWIRTQNLLPM 187

Query: 190 NWNTYASLLRAYGRARYGED---TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
               Y   +++    R+G+       +  +M + G+ L    Y+T+++        D+A 
Sbjct: 188 ETIFYNVTMKSL---RFGKQFGLIEDLAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAV 244

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
             FE M  +    PD  T+S+++ + +  GKV E  +++      G++P+    + L + 
Sbjct: 245 HWFERMYKT-GLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKM 303

Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-----LVECVEKSN 361
           +G+A   D +      +  +G+ P+      LL  M +  K    +     ++E     N
Sbjct: 304 FGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPN 363

Query: 362 SK-LGYVVKLLLEEQDIEGDFKKEATELFNSISKD---VKKAYCNCLIDLCVNLNLLENA 417
            K L  V+K+  + +     + ++A EL+  + ++   +     N L+++C ++ L+E A
Sbjct: 364 EKTLTAVIKIYGKAR-----WSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEA 418


>gi|255563768|ref|XP_002522885.1| ATP binding protein, putative [Ricinus communis]
 gi|223537870|gb|EEF39485.1| ATP binding protein, putative [Ricinus communis]
          Length = 427

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 171/245 (69%), Positives = 202/245 (82%), Gaps = 2/245 (0%)

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPDDRFCGCLLNVMTQTPKEEL 350
           F+  + +    I+ + K +  D   +  + + E   GITPD+RFCGCLLNV+TQTPK+EL
Sbjct: 177 FDKEVILYNVTIKVFRKCRDLDRAEKLFDEMLERESGITPDERFCGCLLNVLTQTPKKEL 236

Query: 351 GKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 410
            KL EC+E +N+KLG+VVKLL+ +   E +FKKEA ELF+S   DVKKAYCNCLIDLCVN
Sbjct: 237 DKLAECIETANTKLGFVVKLLITDAATEANFKKEAAELFDSTGADVKKAYCNCLIDLCVN 296

Query: 411 LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 470
           LNLLE AC+LL+LG+ LE+Y DIQSRS TQWSLHLKSLSLGAALTALH+WINDLSKALES
Sbjct: 297 LNLLERACELLDLGIKLEIYADIQSRSSTQWSLHLKSLSLGAALTALHVWINDLSKALES 356

Query: 471 GEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 530
           G+E PPLLGINTGHGKHKYSDKGLA VFESHLKELNAPFH++ DKVGWFLTT+ AA+SWL
Sbjct: 357 GDELPPLLGINTGHGKHKYSDKGLADVFESHLKELNAPFHEATDKVGWFLTTKVAAESWL 416

Query: 531 ESRSS 535
           ESR +
Sbjct: 417 ESRKA 421



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 60/114 (52%), Gaps = 16/114 (14%)

Query: 1   MASNLCYSTCSLFS--------------TPKLGRRTFTFSFQRDDSLSFYSK-TSLQKRS 45
           MA NLC S  SLF               +    R        R  ++ F S+  SL    
Sbjct: 1   MAYNLCSSPSSLFQPLCNSLSSSSSSSSSSSSLREPHNPRNFRVTTVPFLSRRASLHITH 60

Query: 46  VSLQETQSSNPTKHSQ-NPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR 98
           VSLQ+  +  PT+    N QYP GK GSS KSYIWVNPKSPRAS+LKEKSYD R
Sbjct: 61  VSLQDPITQEPTQQEHANLQYPDGKKGSSSKSYIWVNPKSPRASQLKEKSYDAR 114


>gi|356563451|ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 714

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 180/440 (40%), Positives = 282/440 (64%), Gaps = 4/440 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE    LY+R R   W+ DP  FS L K++G AG++DG   V++EM+++GV+PN++
Sbjct: 271 RLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLV 330

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LL+ MG+A +P   + +++EM + G+ PN  T  ++++ YG+AR+  D L +++ M
Sbjct: 331 VYNTLLEAMGKAGKPVFARGLFEEMIELGIVPNEKTLTAVIKIYGKARWSRDALELWQRM 390

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G  +   LYNTLL MCADVG  +EA  +F DMK S +C+PDSW++++M+ I   +G 
Sbjct: 391 KENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSAHCKPDSWSYTAMLNIYGSQGD 450

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A  +FNEM ++G E N+   T LIQC G+A   DD+VR      E GI PDDR CGC
Sbjct: 451 VDKAMKLFNEMCKSGVELNVMGFTCLIQCLGRATEFDDLVRVFGISVERGIKPDDRLCGC 510

Query: 338 LLNV--MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           LL+V  ++Q   +E  K++ C++++N KL   + L+ +E+      K+E   + ++ + +
Sbjct: 511 LLSVVSLSQGSNDE-EKVLACLQRANPKLVAFIHLIEDEKSSFESVKEEFKGIMSNAAVE 569

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           V++ +CNCLID+C N +L E A +LL LG    +Y  + +++  +W L ++SLS+GAALT
Sbjct: 570 VRRPFCNCLIDICRNKDLRERAHELLYLGTLYGLYPGLHNKTDNEWCLDVRSLSVGAALT 629

Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           AL  W+  L+K ++  E  P L    TG G HK++ +GL   F SHL++L APF  S +K
Sbjct: 630 ALEEWMWTLTKIVKREETLPELFLAQTGTGAHKFA-QGLNISFASHLRKLAAPFKQSEEK 688

Query: 516 VGWFLTTEAAAKSWLESRSS 535
           +G F+ +     SW++S+S+
Sbjct: 689 IGCFIASREDLVSWVQSKST 708



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 149/360 (41%), Gaps = 45/360 (12%)

Query: 72  SSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 131
           S PKS  WVNP   + S L   S   +      +  L D  R  +            KL 
Sbjct: 90  SKPKS-TWVNPTKAKRSVLS--SERQKRATYSYSPQLRDLKRFAQ------------KLN 134

Query: 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE--MTDNGLSP 189
            +  + D  L   EE+      P  I+  N L  +   K PWQ   ++     T N L  
Sbjct: 135 ESGSSEDAFLACLEEI------PRPISRENALLILNTLK-PWQKTNLFLNWIRTQNLLPM 187

Query: 190 NWNTYASLLRAYGRARYGED---TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
               Y   +++    R+G+       +  +M + G+ L    Y+T+++        D+A 
Sbjct: 188 ETIFYNVTMKSL---RFGKQFGLIEELAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAV 244

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
             FE M  + +  PD  T+S+++ + +  GKV E  +++      G++P+    + L + 
Sbjct: 245 HWFERMYKT-SLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKM 303

Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-----LVECVEKSN 361
           +G+A   D +      +  +G+ P+      LL  M +  K    +     ++E     N
Sbjct: 304 FGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVPN 363

Query: 362 SK-LGYVVKLLLEEQDIEGDFKKEATELFNSISKD---VKKAYCNCLIDLCVNLNLLENA 417
            K L  V+K+  + +     + ++A EL+  + ++   +     N L+++C ++ L+E A
Sbjct: 364 EKTLTAVIKIYGKAR-----WSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEA 418


>gi|297791025|ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309232|gb|EFH39656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 179/433 (41%), Positives = 273/433 (63%), Gaps = 3/433 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           VE    LY+RA    W+ D  AFS L K++G AG++DG   V +EMK++ VKPN++ YN 
Sbjct: 272 VEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNT 331

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LL+ MGRA +P   ++++ EM + GL+PN  T  +L++ YG+AR+ +D L ++ EMK K 
Sbjct: 332 LLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWAKDALQLWEEMKAKK 391

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             +   LYNTLL MCAD+G  +EA  +F DMK S  C+PD++++++M+ I    GK  +A
Sbjct: 392 WPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCKPDNFSYTAMLNIYGSGGKAEKA 451

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             +F EMLEAG + N+   T L+QC GKA+R DD+V   +   + G+ PDDR CGCLL+V
Sbjct: 452 MKLFEEMLEAGVQVNVMGCTCLVQCLGKAKRIDDLVYVFDLSIQRGVKPDDRLCGCLLSV 511

Query: 342 MTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAY 400
           M      E+  K++ C+E++N KL   V L+++E+      K+E   + N+   + ++ +
Sbjct: 512 MALCESSEDAEKVMACLERANRKLVTFVNLIVDEKTEFETVKEEFKLVINATQVEARRPF 571

Query: 401 CNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIW 460
           CNCLID+C      E A +LL LG    +Y  + +++  +WSL ++SLS+GAA TAL  W
Sbjct: 572 CNCLIDICRGKKRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEW 631

Query: 461 INDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFL 520
           +  L+  ++  E+ P L    TG G H++S +GLA+ F  HL++L+APF  S D+ G F+
Sbjct: 632 MRTLANIIKRQEDLPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DRAGIFV 689

Query: 521 TTEAAAKSWLESR 533
            T+    SWLES+
Sbjct: 690 ATKEDLVSWLESK 702



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 128/303 (42%), Gaps = 62/303 (20%)

Query: 72  SSPKSYIWVNPKSPRASKL---KEK----SYDTRAGNVEMAFGLYDRARNEKWRIDPNAF 124
           S PKS +WVNP  P+ S L   ++K    SY+ +  ++  AF    +  N     + + F
Sbjct: 86  SKPKS-VWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLR-AFA---QKLNSSNFTEKSEF 140

Query: 125 STLIKLYGTAGNFDGCLNV-------------YEEMKAIGVKP-NMITYNNLLDTMGRAK 170
            +L+       + D  L V             +  +K+  + P   I YN  + ++   +
Sbjct: 141 LSLLDEIPHPPDRDNALLVLNSLREWQKTHTFFNWVKSKNLFPMETIFYNVTMKSLRFGR 200

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYAS---------------------------------- 196
           + + ++ +  EM  +G+  +  TY++                                  
Sbjct: 201 QFYLIEEMALEMVKDGVELDNITYSTIITCAKRCNFYDKAIEWFERMYKTGLMPDEVTYS 260

Query: 197 -LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
            +L  Y + R  E+ LS+Y      G +     ++ L  M  + G  D    + ++MKS 
Sbjct: 261 AILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSM 320

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
            + +P+   +++++      GK   A ++FNEMLEAG  PN   LT+L++ YGKA+   D
Sbjct: 321 -DVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWAKD 379

Query: 316 VVR 318
            ++
Sbjct: 380 ALQ 382


>gi|449462001|ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
 gi|449521148|ref|XP_004167592.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 183/444 (41%), Positives = 277/444 (62%), Gaps = 4/444 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G VE    LY+R R   W  DP  FS L K++G AG++DG + V +EMK+I ++PN++ Y
Sbjct: 269 GKVEEVLSLYERGRASGWTPDPYTFSVLGKMFGEAGDYDGIMYVLQEMKSIEMQPNLVVY 328

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LLD MG+A +P   ++++ EM ++G++PN  T  +L++ YG+AR+  D L ++  M+ 
Sbjct: 329 NTLLDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKARWARDALDLWERMRS 388

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G  +   LYNTLL MCAD+G  +EA  +FE+MK S++ +PDSW++++M+ I    G V 
Sbjct: 389 NGWPMDFILYNTLLNMCADLGLEEEAETLFEEMKKSKHSRPDSWSYTAMLNIYGSGGNVK 448

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            +  +F EMLE G E N+   T LIQC GK+ R DD+VR  N   + GI PDDR CGCLL
Sbjct: 449 RSMELFEEMLELGVEINVMCCTCLIQCLGKSGRIDDLVRVFNVSVQKGIKPDDRLCGCLL 508

Query: 340 NVMTQT-PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD-FKKEATELFNSISKDVK 397
           +V++     E++ K+  C++++N KL   +  LL++ DI  +  K E   +    + + +
Sbjct: 509 SVLSLCYNSEDINKVFTCLQQANPKLVSFIN-LLQQNDITFEVVKNEFRNILGETAPEAR 567

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTAL 457
           + +CNCLID+C N NL E A +LL LG    +Y  + +++ T+W L ++SLS+GAA TAL
Sbjct: 568 RPFCNCLIDICRNQNLRERAHELLYLGSLYGLYPGLHNKTETEWCLDVRSLSVGAAQTAL 627

Query: 458 HIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVG 517
             W+  LSK ++  E  P LL   TG G H++S +GLA+ F SH+ +L APF    D+ G
Sbjct: 628 EEWMITLSKIVQREEALPELLSAQTGAGTHRFS-QGLANSFASHVDKLAAPFQLREDRAG 686

Query: 518 WFLTTEAAAKSWLESRSSLVSVPA 541
           WF+ T     +W+ SR   V+  A
Sbjct: 687 WFVATREDLVTWVHSRVPSVAATA 710



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 1/200 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           ++  EM + G++ + ITY+ ++    +  R  +    ++ M   GL P+  TY+++L  Y
Sbjct: 206 DLANEMISAGIELDNITYSTIITCAKKCSRFDKAMEWFERMYKTGLMPDEVTYSAILDVY 265

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
                 E+ LS+Y   +  G       ++ L  M  + G  D    + ++MKS E  QP+
Sbjct: 266 ANLGKVEEVLSLYERGRASGWTPDPYTFSVLGKMFGEAGDYDGIMYVLQEMKSIE-MQPN 324

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
              +++++      GK   A ++F+EM+E+G  PN   LT+L++ YGKA+   D +    
Sbjct: 325 LVVYNTLLDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKARWARDALDLWE 384

Query: 322 RLPELGITPDDRFCGCLLNV 341
           R+   G   D      LLN+
Sbjct: 385 RMRSNGWPMDFILYNTLLNM 404



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 160/396 (40%), Gaps = 54/396 (13%)

Query: 37  SKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKL-----K 91
           S  S+  ++ SL E   +  T    N      +  S PKS  WVNP  P+ S L     K
Sbjct: 50  SSQSVDNKNPSLSEQLKNLSTTTLSNAPNDETRLLSKPKS-TWVNPTKPKRSVLSLQRQK 108

Query: 92  EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC-LNVYEEMKAI 150
             SY                + N K R D  +F+   KL     + D   +   EE+   
Sbjct: 109 RSSY----------------SYNPKMR-DLKSFAH--KLNACDSSDDASFIAALEEIPHP 149

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
             K N +   N L       RPWQ     +  +    L P    + ++  A    RYG  
Sbjct: 150 PTKENALLILNSL-------RPWQKTHLFFNWIKSQNLFPMETIFYNV--AMKSLRYGRQ 200

Query: 210 ---TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
                 +  EM   G++L    Y+T++         D+A E FE M  +    PD  T+S
Sbjct: 201 FQLIEDLANEMISAGIELDNITYSTIITCAKKCSRFDKAMEWFERMYKT-GLMPDEVTYS 259

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           +++ + +  GKV E  +++     +G+ P+ +  + L + +G+A   D ++  L  +  +
Sbjct: 260 AILDVYANLGKVEEVLSLYERGRASGWTPDPYTFSVLGKMFGEAGDYDGIMYVLQEMKSI 319

Query: 327 GITPDDRFCGCLLNVMTQTPKEELGK-----LVECVEKSNSK-LGYVVKLLLEEQDIEGD 380
            + P+      LL+ M +  K    +     +VE     N K L  +VK+  + +     
Sbjct: 320 EMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKAR----- 374

Query: 381 FKKEATELFNSISKD---VKKAYCNCLIDLCVNLNL 413
           + ++A +L+  +  +   +     N L+++C +L L
Sbjct: 375 WARDALDLWERMRSNGWPMDFILYNTLLNMCADLGL 410



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 112/247 (45%), Gaps = 9/247 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  L+D         +    + L+K+YG A      L+++E M++ G   + I
Sbjct: 337 KAGKPGFARSLFDEMVESGITPNEKTLTALVKIYGKARWARDALDLWERMRSNGWPMDFI 396

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYRE 216
            YN LL+         + +T+++EM  +  S P+  +Y ++L  YG     + ++ ++ E
Sbjct: 397 LYNTLLNMCADLGLEEEAETLFEEMKKSKHSRPDSWSYTAMLNIYGSGGNVKRSMELFEE 456

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G++++V     L+      G  D+   +F ++   +  +PD      ++++ S   
Sbjct: 457 MLELGVEINVMCCTCLIQCLGKSGRIDDLVRVF-NVSVQKGIKPDDRLCGCLLSVLSLCY 515

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--F 334
              +   +F  + +A   P L    +L+Q   +   T +VV+   R       P+ R  F
Sbjct: 516 NSEDINKVFTCLQQAN--PKLVSFINLLQ---QNDITFEVVKNEFRNILGETAPEARRPF 570

Query: 335 CGCLLNV 341
           C CL+++
Sbjct: 571 CNCLIDI 577


>gi|219884651|gb|ACL52700.1| unknown [Zea mays]
          Length = 716

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 174/444 (39%), Positives = 264/444 (59%), Gaps = 8/444 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G+KPN+  Y
Sbjct: 272 GMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVY 331

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL+ +G+  +P   + +++EM D G+ PN  T  +L + YGRAR+G D L ++ +M+E
Sbjct: 332 NALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRE 391

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ----PDSWTFSSMITICSCR 275
             +     L NTLL+MCADVG   EA ++F +MK  E C+    PD W++++MI I    
Sbjct: 392 LKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKGPE-CRDVPKPDKWSYTAMINIYGSN 450

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G    A  +F EML+ G EPN+   T +IQC GKA+R    V  L    E G+ PDDR C
Sbjct: 451 GDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLC 510

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           GCLL+V+  +  EE+  ++  +EK N  L  ++++L + Q    D  +E   + NS + +
Sbjct: 511 GCLLSVIALSSGEEMEMVLSSLEKVNQNLVKLIRVLGDAQVGGDDITEELKSVLNSAAPE 570

Query: 396 VKKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454
           V++ YCNCLID+C N     + A ++  L  T  +Y+ +QSR   +WSL L+SLS+GAA 
Sbjct: 571 VRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYSKLQSRKDEEWSLDLRSLSVGAAK 630

Query: 455 TALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 514
           TA   W+  +S+     ++ P    + TG   HK++ +GLAS F +HL ++  PFH S  
Sbjct: 631 TAFDDWMQTVSERWAQQKDLPESFSVYTGSSTHKFA-QGLASAFAAHLDQMAVPFHASES 689

Query: 515 KVGWFLTTEAAAKSWLE-SRSSLV 537
           + G F+++     SWL+ SRSS V
Sbjct: 690 QAGSFISSRDDLVSWLQMSRSSAV 713



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 113/268 (42%), Gaps = 36/268 (13%)

Query: 185 NGLSPNWNTYASLL---RAYGRARYGEDTL-------------------SVYREMKEKGM 222
           N L P+W    SLL   RA     +  DT+                    +  +M + G+
Sbjct: 159 NYLHPSWRKSLSLLAWLRALPAGAFPLDTIFFNVALKSLRAARQWPHAERLALDMLDAGV 218

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            L    Y+TL+          +A E FE M +++   PD  T+S+++ + +  G   E  
Sbjct: 219 PLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVL 278

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           A+F+    +G++P+      L + +G+A   D +      + E+GI P+      LL  +
Sbjct: 279 ALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEAL 338

Query: 343 TQTPKEELGK------LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-- 394
            +T K  L +      + + VE +   L  + K+    +     + ++A +L++ + +  
Sbjct: 339 GKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRAR-----WGRDALQLWDKMRELK 393

Query: 395 -DVKKAYCNCLIDLCVNLNLLENACKLL 421
                  CN L+ +C ++ L+  A +L 
Sbjct: 394 LPADSILCNTLLSMCADVGLVAEAEQLF 421


>gi|212274745|ref|NP_001130291.1| uncharacterized protein LOC100191385 [Zea mays]
 gi|194688762|gb|ACF78465.1| unknown [Zea mays]
 gi|223949231|gb|ACN28699.1| unknown [Zea mays]
 gi|414874010|tpg|DAA52567.1| TPA: salt-inducible protein [Zea mays]
          Length = 716

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 174/444 (39%), Positives = 264/444 (59%), Gaps = 8/444 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G+KPN+  Y
Sbjct: 272 GMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVY 331

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL+ +G+  +P   + +++EM D G+ PN  T  +L + YGRAR+G D L ++ +M+E
Sbjct: 332 NALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRE 391

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ----PDSWTFSSMITICSCR 275
             +     L NTLL+MCADVG   EA ++F +MK  E C+    PD W++++MI I    
Sbjct: 392 LKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPE-CRDVPKPDKWSYTAMINIYGSN 450

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G    A  +F EML+ G EPN+   T +IQC GKA+R    V  L    E G+ PDDR C
Sbjct: 451 GDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLC 510

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           GCLL+V+  +  EE+  ++  +EK N  L  ++++L + Q    D  +E   + NS + +
Sbjct: 511 GCLLSVIALSSGEEMEMVLSSLEKVNQNLVKLIRVLGDAQVGGDDITEELKSVLNSAAPE 570

Query: 396 VKKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454
           V++ YCNCLID+C N     + A ++  L  T  +Y+ +QSR   +WSL L+SLS+GAA 
Sbjct: 571 VRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYSKLQSRKDEEWSLDLRSLSVGAAK 630

Query: 455 TALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 514
           TA   W+  +S+     ++ P    + TG   HK++ +GLAS F +HL ++  PFH S  
Sbjct: 631 TAFDDWMQTVSERWAQQKDLPESFSVYTGSSTHKFA-QGLASAFAAHLDQMAVPFHASES 689

Query: 515 KVGWFLTTEAAAKSWLE-SRSSLV 537
           + G F+++     SWL+ SRSS V
Sbjct: 690 QAGSFISSRDDLVSWLQMSRSSAV 713



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 113/268 (42%), Gaps = 36/268 (13%)

Query: 185 NGLSPNWNTYASLL---RAYGRARYGEDTL-------------------SVYREMKEKGM 222
           N L P+W    SLL   RA     +  DT+                    +  +M + G+
Sbjct: 159 NYLHPSWRKSLSLLAWLRALPAGAFPLDTIFFNVALKSLRAARQWPHAERLALDMLDAGV 218

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            L    Y+TL+          +A E FE M +++   PD  T+S+++ + +  G   E  
Sbjct: 219 PLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVL 278

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           A+F+    +G++P+      L + +G+A   D +      + E+GI P+      LL  +
Sbjct: 279 ALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEAL 338

Query: 343 TQTPKEELGK------LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-- 394
            +T K  L +      + + VE +   L  + K+    +     + ++A +L++ + +  
Sbjct: 339 GKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRAR-----WGRDALQLWDKMRELK 393

Query: 395 -DVKKAYCNCLIDLCVNLNLLENACKLL 421
                  CN L+ +C ++ L+  A +L 
Sbjct: 394 LPADSILCNTLLSMCADVGLVAEAEQLF 421


>gi|224031359|gb|ACN34755.1| unknown [Zea mays]
          Length = 504

 Score =  344 bits (882), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 174/444 (39%), Positives = 264/444 (59%), Gaps = 8/444 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G+KPN+  Y
Sbjct: 60  GMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVY 119

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL+ +G+  +P   + +++EM D G+ PN  T  +L + YGRAR+G D L ++ +M+E
Sbjct: 120 NALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRE 179

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ----PDSWTFSSMITICSCR 275
             +     L NTLL+MCADVG   EA ++F +MK  E C+    PD W++++MI I    
Sbjct: 180 LKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPE-CRDVPKPDKWSYTAMINIYGSN 238

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G    A  +F EML+ G EPN+   T +IQC GKA+R    V  L    E G+ PDDR C
Sbjct: 239 GDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLC 298

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           GCLL+V+  +  EE+  ++  +EK N  L  ++++L + Q    D  +E   + NS + +
Sbjct: 299 GCLLSVIALSSGEEMEMVLSSLEKVNQNLVKLIRVLGDAQVGGDDITEELKSVLNSAAPE 358

Query: 396 VKKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454
           V++ YCNCLID+C N     + A ++  L  T  +Y+ +QSR   +WSL L+SLS+GAA 
Sbjct: 359 VRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYSKLQSRKDEEWSLDLRSLSVGAAK 418

Query: 455 TALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 514
           TA   W+  +S+     ++ P    + TG   HK++ +GLAS F +HL ++  PFH S  
Sbjct: 419 TAFDDWMQTVSERWAQQKDLPESFSVYTGSSTHKFA-QGLASAFAAHLDQMAVPFHASES 477

Query: 515 KVGWFLTTEAAAKSWLE-SRSSLV 537
           + G F+++     SWL+ SRSS V
Sbjct: 478 QAGSFISSRDDLVSWLQMSRSSAV 501



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G+ L    Y+TL+          +A E FE M +++   PD  T+S+++ + +  G
Sbjct: 1   MLDAGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLG 60

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              E  A+F+    +G++P+      L + +G+A   D +      + E+GI P+     
Sbjct: 61  MKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYN 120

Query: 337 CLLNVMTQTPKEELGK------LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390
            LL  + +T K  L +      + + VE +   L  + K+    +     + ++A +L++
Sbjct: 121 ALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRAR-----WGRDALQLWD 175

Query: 391 SISK---DVKKAYCNCLIDLCVNLNLLENACKLL 421
            + +         CN L+ +C ++ L+  A +L 
Sbjct: 176 KMRELKLPADSILCNTLLSMCADVGLVAEAEQLF 209


>gi|363543445|ref|NP_001241732.1| salt-inducible protein [Zea mays]
 gi|195610062|gb|ACG26861.1| salt-inducible protein [Zea mays]
          Length = 716

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 174/444 (39%), Positives = 262/444 (59%), Gaps = 8/444 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G+KPN+  Y
Sbjct: 272 GMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVY 331

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL+ +G+  +P   + +++EM D G+ PN  T  +L + YGRAR+G D L ++ +M+E
Sbjct: 332 NALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRE 391

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ----PDSWTFSSMITICSCR 275
             +     L NTLL+MCADVG   EA ++F +MK  E C+    PD W++++MI I    
Sbjct: 392 LKLPADSILCNTLLSMCADVGLVAEAEQLFNEMKDPE-CRDVPKPDKWSYTAMINIYGSN 450

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G    A  +F EML+ G EPN+   T +IQC GKA R    V  L    E G+ PDDR C
Sbjct: 451 GDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKAHRIQQAVEVLESGLEKGLKPDDRLC 510

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           GCLL+V+  +  EE+  ++  +EK N  L  ++++L + Q    D  KE   + N  + +
Sbjct: 511 GCLLSVIALSSGEEMEMVLSSLEKVNQNLVKLIRVLGDAQVGGYDITKELKSVLNGAAPE 570

Query: 396 VKKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454
           V++ YCNCLID+C N     + A ++  L  T  +Y+ +QSR   +WSL L+SLS+GAA 
Sbjct: 571 VRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYSKLQSRKDEEWSLDLRSLSVGAAK 630

Query: 455 TALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 514
           TA   W+  +S+     ++ P    + TG   HK++ +GLAS F +HL ++  PFH S  
Sbjct: 631 TAFDDWMQTVSERWAQQKDLPESFSVYTGSSTHKFA-QGLASAFAAHLDQMAVPFHASES 689

Query: 515 KVGWFLTTEAAAKSWLE-SRSSLV 537
           + G F+++     SWL+ SRSS V
Sbjct: 690 QAGSFISSRDDLVSWLQMSRSSAV 713



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 113/268 (42%), Gaps = 36/268 (13%)

Query: 185 NGLSPNWNTYASLL---RAYGRARYGEDTL-------------------SVYREMKEKGM 222
           N L P+W    SLL   RA     +  DT+                    +  +M + G+
Sbjct: 159 NYLHPSWRKSLSLLAWLRALPAGAFPLDTIFFNVALKSLRAARQWPHAERLALDMLDAGV 218

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            L    Y+TL+          +A E FE M +++   PD  T+S+++ + +  G   E  
Sbjct: 219 PLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVL 278

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           A+F+    +G++P+      L + +G+A   D +      + E+GI P+      LL  +
Sbjct: 279 ALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEAL 338

Query: 343 TQTPKEELGK------LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-- 394
            +T K  L +      + + VE +   L  + K+    +     + ++A +L++ + +  
Sbjct: 339 GKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRAR-----WGRDALQLWDKMRELK 393

Query: 395 -DVKKAYCNCLIDLCVNLNLLENACKLL 421
                  CN L+ +C ++ L+  A +L 
Sbjct: 394 LPADSILCNTLLSMCADVGLVAEAEQLF 421


>gi|242037347|ref|XP_002466068.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor]
 gi|241919922|gb|EER93066.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor]
          Length = 722

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/441 (38%), Positives = 261/441 (59%), Gaps = 7/441 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E    L+DRAR   W+ D  AF+ L K++G AG+++G   V++EM  +G+KPN+  Y
Sbjct: 278 GMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYEGIQFVFKEMTEVGIKPNIFVY 337

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL+ +G+  +P   + +++EM + G+ PN  T  +L + YGRAR+G D L ++ +M+E
Sbjct: 338 NALLEALGKTGKPGLARNLFEEMVEQGVDPNARTLTALAKIYGRARWGRDALQLWDKMRE 397

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ----PDSWTFSSMITICSCR 275
             +     L NTLL+MCADVG  +EA ++F +MK  E C+    PD W++++MI I    
Sbjct: 398 LKLPADNILCNTLLSMCADVGLVNEAEQLFNEMKDPE-CRDVPKPDKWSYTAMINIYGSN 456

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G    A  +F EML+ G EPN+   T +IQC GKAQR    V  L    E G+ PDDR C
Sbjct: 457 GDTDRALQLFGEMLKGGIEPNIMSYTIVIQCLGKAQRIQQAVEVLEAGLEKGLKPDDRLC 516

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           GCLL+V+  +  EE+  ++  ++K N  L  ++++L + Q    D  KE   + N+ + +
Sbjct: 517 GCLLSVIALSSGEEMEIVLSSLQKFNQNLVKLIRVLSDAQVGADDITKELKSVLNAAAPE 576

Query: 396 VKKAYCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454
           V++ YCNCLID+C N     + A ++  L  T  +YT +QSR   +WSL L+SLS+GAA 
Sbjct: 577 VRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYTKLQSRKDEEWSLDLRSLSVGAAK 636

Query: 455 TALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPD 514
           TA   W+  +S+     +  P    + TG   HK++ +GLAS F +HL+++  PFH S  
Sbjct: 637 TAFDDWMQTVSERWVQQKALPESFSVYTGSSTHKFA-QGLASAFAAHLEQMAVPFHASES 695

Query: 515 KVGWFLTTEAAAKSWLESRSS 535
           + G F+++     SWL+  SS
Sbjct: 696 QAGSFISSRDDLVSWLQMSSS 716



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 112/266 (42%), Gaps = 32/266 (12%)

Query: 185 NGLSPNWNTYASLL---RAYGRARYGEDTL-------------------SVYREMKEKGM 222
           N L P+W    SLL   RA     +  DT+                    +  +M + G+
Sbjct: 165 NYLHPSWRKTLSLLAWLRALPAGAFQLDTIFFNVALKSLRAARQWPHAERLALDMLDAGV 224

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            L    Y+TL+          +A E FE M +++   PD  T+S+++ + +  G   E  
Sbjct: 225 PLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVL 284

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           A+F+    +G++P+      L + +G+A   + +      + E+GI P+      LL  +
Sbjct: 285 ALFDRARGSGWKPDHVAFAVLAKMFGEAGDYEGIQFVFKEMTEVGIKPNIFVYNALLEAL 344

Query: 343 TQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFK--KEATELFNSISK---D 395
            +T K  L +    E VE+        +  L +   I G  +  ++A +L++ + +    
Sbjct: 345 GKTGKPGLARNLFEEMVEQGVDPNARTLTALAK---IYGRARWGRDALQLWDKMRELKLP 401

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLL 421
                CN L+ +C ++ L+  A +L 
Sbjct: 402 ADNILCNTLLSMCADVGLVNEAEQLF 427


>gi|326518288|dbj|BAJ88173.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527987|dbj|BAJ89045.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 706

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 166/434 (38%), Positives = 254/434 (58%), Gaps = 5/434 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G KPN+  YN L
Sbjct: 264 EEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGTKPNIFVYNAL 323

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L+ +G+  +P   + +++EMT  G+ PN  T  ++ + YGRAR+G D L ++ +M+EK +
Sbjct: 324 LEALGKTGKPGLARNLFEEMTAEGVEPNARTLTAVAKIYGRARWGRDALQLWDQMREKKI 383

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS---SENCQPDSWTFSSMITICSCRGKVS 279
                L NTLL+MCADVG   EA ++FE+MK    ++  QPD W++++MI I        
Sbjct: 384 PADSILCNTLLSMCADVGLVAEAEQLFEEMKDPDLTDVPQPDKWSYTAMINIYGSIKDAD 443

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +F EML++G E N+   T +IQC GKA R  D V  L    E G+ PDDR CGCLL
Sbjct: 444 RALQLFVEMLQSGIEANIMSYTIVIQCLGKANRIRDAVEVLEAGLERGLKPDDRLCGCLL 503

Query: 340 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA 399
           +V+  +  EE   ++ C+EK N  L  ++++L ++Q    + K++   + N+   DV++ 
Sbjct: 504 SVVALSTGEETELVLACLEKFNRNLVKLIRMLGDDQVGADELKEQLKAVLNAAETDVRRP 563

Query: 400 YCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 458
           YCNCLID+C N  L      +L  L     +Y+ +  R   +W L L+SLS+GAA TA  
Sbjct: 564 YCNCLIDICQNHGLPARRPRELFRLAQGYGLYSKLHIRKDDEWLLDLRSLSVGAAKTAFD 623

Query: 459 IWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGW 518
            W+  L +    G+  P    + TG   HK++ +GLAS F +HL+E  APF  S  +VG 
Sbjct: 624 DWMAALKERAVQGQTLPQSFNVFTGSSTHKFA-QGLASAFAAHLEEAAAPFRPSESQVGS 682

Query: 519 FLTTEAAAKSWLES 532
           F+++      WL++
Sbjct: 683 FVSSRDELVLWLQT 696



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 55/326 (16%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           G   + I +N  L ++ RA R W + + +  +M D+G+  +  TY++L+ A  R R    
Sbjct: 170 GFAVDTILFNVALKSL-RAARRWDEAERLALDMVDSGVPLDNITYSTLITAARRCRQFAK 228

Query: 210 TLSVYREMKEKGMQL---SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            +  +  M   G  +    VT Y+ +L + A +   +E   +F+  + S   +PD   F+
Sbjct: 229 AVEWFERMYSPGSAVLPDEVT-YSAVLDVYAQLRMKEEVLALFDRARGS-GWKPDHVAFA 286

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            +  +    G     + +F EM E G +PN+FV  +L++  GK  +              
Sbjct: 287 VLAKMFGEAGDYDGIQFVFKEMREVGTKPNIFVYNALLEALGKTGKP------------- 333

Query: 327 GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 386
                    G   N+      EE+    E VE +   L  V K+    +     + ++A 
Sbjct: 334 ---------GLARNLF-----EEMT--AEGVEPNARTLTAVAKIYGRAR-----WGRDAL 372

Query: 387 ELFNSISKDVKKA---YCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSL 443
           +L++ + +    A    CN L+ +C ++ L+  A +L E  +     TD+    P +WS 
Sbjct: 373 QLWDQMREKKIPADSILCNTLLSMCADVGLVAEAEQLFE-EMKDPDLTDVP--QPDKWSY 429

Query: 444 HLKSLSLGAALTALHIWINDLSKALE 469
                    A+  ++  I D  +AL+
Sbjct: 430 --------TAMINIYGSIKDADRALQ 447


>gi|115456691|ref|NP_001051946.1| Os03g0856100 [Oryza sativa Japonica Group]
 gi|41393252|gb|AAS01975.1| putative chloroplastic RNA-binding protein, with alternative
           splicing isoforms [Oryza sativa Japonica Group]
 gi|113550417|dbj|BAF13860.1| Os03g0856100 [Oryza sativa Japonica Group]
 gi|222626198|gb|EEE60330.1| hypothetical protein OsJ_13428 [Oryza sativa Japonica Group]
          Length = 640

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 167/440 (37%), Positives = 258/440 (58%), Gaps = 6/440 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G+KPN+  Y
Sbjct: 197 GMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVY 256

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL+ +G+  +P   + +++EMT  G+ PN  T  +L + YGRAR+G D L ++ +M+E
Sbjct: 257 NALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGRDALQLWEQMRE 316

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS---SENCQPDSWTFSSMITICSCRG 276
           K +     L NTLL+MCADVG   EA ++F +MK     +  +PD W++++MI I    G
Sbjct: 317 KKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSG 376

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
               A  +F EM+E+G EPN+   T +IQC GKA R  + V  L      G+ PDDR CG
Sbjct: 377 DADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCG 436

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           CLL+V+  +  +E   ++ C+EK  S L  ++++L + +    D + E   + NS + +V
Sbjct: 437 CLLSVVALSSGDETEVILACLEKVRSNLVKLIRMLGDARVGVEDLRVELKGILNSAAPEV 496

Query: 397 KKAYCNCLIDLCVNLNLL-ENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           ++ YCNCLID+C N     E A +L  L     +Y+ I +R   +WSL L+SLS+GAA T
Sbjct: 497 RRPYCNCLIDICRNHGYPSERAVELFRLARHYGLYSKIHTRKEEEWSLDLRSLSVGAAKT 556

Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           A   W+  + +  E  E  P    + TG   HK++ +GLA+   SHL+++ APF  S  +
Sbjct: 557 AFDDWMKTIREH-EEEEALPQTFSVYTGSSTHKFA-QGLATAVASHLEQVGAPFRASDSQ 614

Query: 516 VGWFLTTEAAAKSWLESRSS 535
           +G F+++     SWL +  S
Sbjct: 615 LGSFISSRDDLLSWLHTTMS 634



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 14/215 (6%)

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+ L    Y+TL+         D+A E FE M +S+   PD  T+S+++ + +  
Sbjct: 137 DMLASGVPLDNITYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVTYSAILDVYAQL 196

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G   E  A+F+    +G++P+      L + +G+A   D +      + E+GI P+    
Sbjct: 197 GMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVY 256

Query: 336 GCLLNVMTQTPKEELGK------LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
             LL  + +T K  L +        E VE +   L  + K+    +     + ++A +L+
Sbjct: 257 NALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRAR-----WGRDALQLW 311

Query: 390 NSISKDVKKA---YCNCLIDLCVNLNLLENACKLL 421
             + +    A    CN L+ +C ++ L+  A +L 
Sbjct: 312 EQMREKKLPADNILCNTLLSMCADVGLVGEAEQLF 346



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 109/253 (43%), Gaps = 19/253 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   +A  L++    E   ++PNA   + L K+YG A      L ++E+M+   +  +
Sbjct: 265 KTGKPGLARNLFEEMTAEG--VEPNARTLTALAKIYGRARWGRDALQLWEQMREKKLPAD 322

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS----PNWNTYASLLRAYGRARYGEDTL 211
            I  N LL          + + ++ EM D  L     P+  +Y +++  YG +   +  L
Sbjct: 323 NILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGDADRAL 382

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            ++ EM E G++ ++  Y  ++      G   EA ++ E    ++  +PD         +
Sbjct: 383 QLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLE-AGMAKGLKPDD-------RL 434

Query: 272 CSC-RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           C C    V+ +     E++ A  E     L  LI+  G A+   + +R   +       P
Sbjct: 435 CGCLLSVVALSSGDETEVILACLEKVRSNLVKLIRMLGDARVGVEDLRVELKGILNSAAP 494

Query: 331 DDR--FCGCLLNV 341
           + R  +C CL+++
Sbjct: 495 EVRRPYCNCLIDI 507


>gi|218194139|gb|EEC76566.1| hypothetical protein OsI_14394 [Oryza sativa Indica Group]
          Length = 701

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 167/440 (37%), Positives = 257/440 (58%), Gaps = 8/440 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G+KPN+  Y
Sbjct: 260 GMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVY 319

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL+ +G+  +P   + +++EMT  G+ PN  T  +L + YGRAR+G D L ++ +M+E
Sbjct: 320 NALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGRDALQLWEQMRE 379

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS---SENCQPDSWTFSSMITICSCRG 276
           K +     L NTLL+MCADVG   EA ++F +MK     +  +PD W++++MI I    G
Sbjct: 380 KKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSG 439

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
               A  +F EM+E+G EPN+   T +IQC GKA R  + V  L      G+ PDDR CG
Sbjct: 440 DADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCG 499

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           CLL+V+  +  +E   ++ C+EK  S L  ++++L + +    D + E   + NS + +V
Sbjct: 500 CLLSVVALSSGDETEVILACLEKVRSNLVKLIRMLGDARVGVEDLRVELKGILNSAAPEV 559

Query: 397 KKAYCNCLIDLCVNLNLL-ENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           ++ YCNCLID+C N     E A +L  L     +Y+ I +R   +WSL L+SLS+GAA T
Sbjct: 560 RRPYCNCLIDICRNHGYPSERAVELFRLARHYGLYSKIHTRKEEEWSLDLRSLSVGAAKT 619

Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           A   W+  +    E  E  P    + TG   HK++ +GLA+   SHL+++ APF  S  +
Sbjct: 620 AFDDWMKTIR---EHEEALPQTFSVYTGSSTHKFA-QGLATAVASHLEQVGAPFRASDSQ 675

Query: 516 VGWFLTTEAAAKSWLESRSS 535
           +G F+++     SWL +  S
Sbjct: 676 LGSFISSRDDLLSWLHTTMS 695



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 36/268 (13%)

Query: 185 NGLSPNWNTYASLL---RAYGRARYGEDTL-------------------SVYREMKEKGM 222
           N L P+W    SLL   RA     +  DT+                    +  +M   G+
Sbjct: 147 NYLHPSWRKSLSLLCWLRALPDGAFPLDTIVFNVALKSLRAARQWPQAERLALDMLASGV 206

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            L    Y+TL+         D+A E FE M +S+   PD  T+S+++ + +  G   E  
Sbjct: 207 PLDNITYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVTYSAILDVYAQLGMKEEVL 266

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           A+F+    +G++P+      L + +G+A   D +      + E+GI P+      LL  +
Sbjct: 267 ALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEAL 326

Query: 343 TQTPKEELGK------LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
            +T K  L +        E VE +   L  + K+    +     + ++A +L+  + +  
Sbjct: 327 GKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRAR-----WGRDALQLWEQMREKK 381

Query: 397 KKA---YCNCLIDLCVNLNLLENACKLL 421
             A    CN L+ +C ++ L+  A +L 
Sbjct: 382 LPADNILCNTLLSMCADVGLVGEAEQLF 409



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 109/253 (43%), Gaps = 19/253 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   +A  L++    E   ++PNA   + L K+YG A      L ++E+M+   +  +
Sbjct: 328 KTGKPGLARNLFEEMTAEG--VEPNARTLTALAKIYGRARWGRDALQLWEQMREKKLPAD 385

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS----PNWNTYASLLRAYGRARYGEDTL 211
            I  N LL          + + ++ EM D  L     P+  +Y +++  YG +   +  L
Sbjct: 386 NILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGDADRAL 445

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            ++ EM E G++ ++  Y  ++      G   EA ++ E    ++  +PD         +
Sbjct: 446 QLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLE-AGMAKGLKPDD-------RL 497

Query: 272 CSC-RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           C C    V+ +     E++ A  E     L  LI+  G A+   + +R   +       P
Sbjct: 498 CGCLLSVVALSSGDETEVILACLEKVRSNLVKLIRMLGDARVGVEDLRVELKGILNSAAP 557

Query: 331 DDR--FCGCLLNV 341
           + R  +C CL+++
Sbjct: 558 EVRRPYCNCLIDI 570


>gi|326495542|dbj|BAJ85867.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 706

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 166/434 (38%), Positives = 254/434 (58%), Gaps = 5/434 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G KPN+  YN L
Sbjct: 264 EEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGTKPNIFVYNAL 323

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L+ +G+  +P   + +++EMT  G+ PN  T  ++ + YGRAR+G D L ++ +M+EK +
Sbjct: 324 LEALGKTGKPGLARNLFEEMTAEGVEPNARTLTAVAKIYGRARWGRDALQLWDQMREKKI 383

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS---SENCQPDSWTFSSMITICSCRGKVS 279
                L NTLL+MCADVG   EA ++FE+MK    ++  QPD W++++MI I        
Sbjct: 384 PADSILCNTLLSMCADVGLVAEAEQLFEEMKDPDLTDVPQPDKWSYTAMINIYGSIKDAD 443

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +F EML++G E N+   T +IQC GKA R  D V  L    E G+ PDDR CGCLL
Sbjct: 444 RALQLFVEMLQSGIEANIMSYTIVIQCLGKANRIRDAVEMLEAGLERGLKPDDRLCGCLL 503

Query: 340 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA 399
           +V+  +  EE   ++ C+EK N  L  ++++L ++Q    + K++   + N+   DV++ 
Sbjct: 504 SVVALSTGEETELVLACLEKFNRNLVKLIRMLGDDQVGADELKEQLKAVLNAAETDVRRP 563

Query: 400 YCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 458
           YCNCLID+C N  L      +L  L     +Y+ +  R   +W L L+SLS+GAA TA  
Sbjct: 564 YCNCLIDICQNHGLPARRPRELFRLAQGYGLYSKLHIRKDDEWLLDLRSLSVGAAKTAFD 623

Query: 459 IWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGW 518
            W+  L +    G+  P    + TG   HK++ +GLAS F +HL+E  APF  S  +VG 
Sbjct: 624 DWMAALKERAVQGQTLPQSFNVFTGSSTHKFA-QGLASAFAAHLEEAAAPFRPSESQVGS 682

Query: 519 FLTTEAAAKSWLES 532
           F+++      WL++
Sbjct: 683 FVSSRDELVLWLQT 696



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 55/326 (16%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           G   + I +N  L ++ RA R W + + +  +M D+G+  +  TY++L+ A  R R    
Sbjct: 170 GFAVDTILFNVALKSL-RAARRWDEAERLALDMVDSGVPLDNITYSTLITAARRCRQFAK 228

Query: 210 TLSVYREMKEKGMQL---SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            +  +  M   G  +    VT Y+ +L + A +   +E   +F+  + S   +PD   F+
Sbjct: 229 AVEWFERMYSPGSAVLPDEVT-YSAVLDVYAQLRMKEEVLALFDRARGS-GWKPDHVAFA 286

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            +  +    G     + +F EM E G +PN+FV  +L++  GK  +              
Sbjct: 287 VLAKMFGEAGDYDGIQFVFKEMREVGTKPNIFVYNALLEALGKTGKP------------- 333

Query: 327 GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 386
                    G   N+      EE+    E VE +   L  V K+    +     + ++A 
Sbjct: 334 ---------GLARNLF-----EEMT--AEGVEPNARTLTAVAKIYGRAR-----WGRDAL 372

Query: 387 ELFNSISKDVKKA---YCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSL 443
           +L++ + +    A    CN L+ +C ++ L+  A +L E  +     TD+    P +WS 
Sbjct: 373 QLWDQMREKKIPADSILCNTLLSMCADVGLVAEAEQLFE-EMKDPDLTDVP--QPDKWSY 429

Query: 444 HLKSLSLGAALTALHIWINDLSKALE 469
                    A+  ++  I D  +AL+
Sbjct: 430 --------TAMINIYGSIKDADRALQ 447


>gi|357114648|ref|XP_003559110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Brachypodium distachyon]
          Length = 875

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 163/434 (37%), Positives = 251/434 (57%), Gaps = 5/434 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E    L+DRAR   W+ D  AF+ L K++G AG++DG   V+ EM+ +G+KPN+  YN L
Sbjct: 261 EEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFREMREVGIKPNIFVYNAL 320

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L+ +G+  +P   +++++EMT  G+ PN  T  ++ + YGRAR+G D L ++ +M++K +
Sbjct: 321 LEALGKTGKPGLARSLFEEMTAEGVEPNARTLTAVAKIYGRARWGRDALQLWEQMRQKKI 380

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS---SENCQPDSWTFSSMITICSCRGKVS 279
                L NTLL+MCADVG   EA ++FE+MK    S+  +PD W++++MI I        
Sbjct: 381 PADSILCNTLLSMCADVGLVAEAEQLFEEMKDPELSDVPKPDKWSYTAMINIYGSIKDAD 440

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +F EML  G EPN+   T +IQC GK  R  D    L    E G+ PDDR CGCLL
Sbjct: 441 RALQLFAEMLAEGIEPNIMSYTIVIQCLGKTNRIQDAAEVLEAGLERGLKPDDRLCGCLL 500

Query: 340 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA 399
           +V+  +  +E   ++ C+EK N  L  +++LL + Q    + K+E   + N+   +V++ 
Sbjct: 501 SVVALSSGDETELMLACLEKVNRNLVKLIRLLGDAQVGVDELKEELKAVLNAADSEVRRP 560

Query: 400 YCNCLIDLCVNLNL-LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 458
           YCNCLID+C N       + +L  L     +Y+ +  R   +W L L+SLS+GAA TA  
Sbjct: 561 YCNCLIDICQNHGFPAHRSGELFHLAQHYGLYSKLHIRKDEEWLLDLRSLSVGAAKTAFD 620

Query: 459 IWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGW 518
            W+  +S+    G+  P    + TG   HK++ +GLAS F  HL+E   PF  S  +VG 
Sbjct: 621 DWMKTISERSAQGKPLPEFFNVFTGSSTHKFA-QGLASAFAVHLEETAVPFRPSESQVGS 679

Query: 519 FLTTEAAAKSWLES 532
           F+++     SWL++
Sbjct: 680 FVSSRDDLVSWLQT 693



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 27/265 (10%)

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS--SENCQPDSWTFSSMITICS 273
           +M   G+ L    Y+TL+          +A E FE M S       PD  T+S+++ + +
Sbjct: 196 DMVASGVPLDNITYSTLITAARRCRQFAKAVEWFERMYSPGGGGVLPDEVTYSAVLDVYA 255

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
                 E  A+F+    +G++P+      L + +G+A   D +      + E+GI P+  
Sbjct: 256 QLRMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFREMREVGIKPNIF 315

Query: 334 FCGCLLNVMTQTPKEELGK------LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 387
               LL  + +T K  L +        E VE +   L  V K+    +     + ++A +
Sbjct: 316 VYNALLEALGKTGKPGLARSLFEEMTAEGVEPNARTLTAVAKIYGRAR-----WGRDALQ 370

Query: 388 LFNSISKDVKKA---YCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLH 444
           L+  + +    A    CN L+ +C ++ L+  A +L E     E+ +D+    P +WS  
Sbjct: 371 LWEQMRQKKIPADSILCNTLLSMCADVGLVAEAEQLFEEMKDPEL-SDVP--KPDKWSY- 426

Query: 445 LKSLSLGAALTALHIWINDLSKALE 469
                   A+  ++  I D  +AL+
Sbjct: 427 -------TAMINIYGSIKDADRALQ 444


>gi|41393251|gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative
           splicing isoforms [Oryza sativa Japonica Group]
 gi|108712189|gb|ABF99984.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 884

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 168/445 (37%), Positives = 258/445 (57%), Gaps = 16/445 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E    L+DRAR   W+ D  AF+ L K++G AG++DG   V++EM+ +G+KPN+  Y
Sbjct: 257 GMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVY 316

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL+ +G+  +P   + +++EMT  G+ PN  T  +L + YGRAR+G D L ++ +M+E
Sbjct: 317 NALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRARWGRDALQLWEQMRE 376

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS---SENCQPDSWTFSSMITICSCRG 276
           K +     L NTLL+MCADVG   EA ++F +MK     +  +PD W++++MI I    G
Sbjct: 377 KKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSG 436

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
               A  +F EM+E+G EPN+   T +IQC GKA R  + V  L      G+ PDDR CG
Sbjct: 437 DADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGLKPDDRLCG 496

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           CLL+V+  +  +E   ++ C+EK  S L  ++++L + +    D + E   + NS + +V
Sbjct: 497 CLLSVVALSSGDETEVILACLEKVRSNLVKLIRMLGDARVGVEDLRVELKGILNSAAPEV 556

Query: 397 KKAYCNCLIDLCVNLNLL-ENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
           ++ YCNCLID+C N     E A +L  L     +Y+ I +R   +WSL L+SLS+GAA T
Sbjct: 557 RRPYCNCLIDICRNHGYPSERAVELFRLARHYGLYSKIHTRKEEEWSLDLRSLSVGAAKT 616

Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
           A   W+  + +  E  E  P    + TG   HK++ +GLA+   SHL+++ APF  S  +
Sbjct: 617 AFDDWMKTIREH-EEEEALPQTFSVYTGSSTHKFA-QGLATAVASHLEQVGAPFRASDSQ 674

Query: 516 VGWFLTTEAAAKSWLESRSSLVSVP 540
           +G F++          SR  L+S P
Sbjct: 675 LGSFIS----------SRDDLLSCP 689



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 14/251 (5%)

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + + D     +   +   L++   AR       +  +M   G+ L    Y+TL+      
Sbjct: 161 RALPDGAFPLDTIVFNVALKSLRAARQWPQAERLALDMLASGVPLDNITYSTLITAARRC 220

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              D+A E FE M +S+   PD  T+S+++ + +  G   E  A+F+    +G++P+   
Sbjct: 221 RQFDKAVEWFERMYASDGVLPDEVTYSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVA 280

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK------L 353
              L + +G+A   D +      + E+GI P+      LL  + +T K  L +       
Sbjct: 281 FAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMT 340

Query: 354 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA---YCNCLIDLCVN 410
            E VE +   L  + K+    +     + ++A +L+  + +    A    CN L+ +C +
Sbjct: 341 AEGVEPNARTLTALAKIYGRAR-----WGRDALQLWEQMREKKLPADNILCNTLLSMCAD 395

Query: 411 LNLLENACKLL 421
           + L+  A +L 
Sbjct: 396 VGLVGEAEQLF 406



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 109/253 (43%), Gaps = 19/253 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   +A  L++    E   ++PNA   + L K+YG A      L ++E+M+   +  +
Sbjct: 325 KTGKPGLARNLFEEMTAEG--VEPNARTLTALAKIYGRARWGRDALQLWEQMREKKLPAD 382

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS----PNWNTYASLLRAYGRARYGEDTL 211
            I  N LL          + + ++ EM D  L     P+  +Y +++  YG +   +  L
Sbjct: 383 NILCNTLLSMCADVGLVGEAEQLFSEMKDPDLGDVPKPDKWSYTAMINIYGSSGDADRAL 442

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            ++ EM E G++ ++  Y  ++      G   EA ++ E    ++  +PD         +
Sbjct: 443 QLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLE-AGMAKGLKPDD-------RL 494

Query: 272 CSC-RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           C C    V+ +     E++ A  E     L  LI+  G A+   + +R   +       P
Sbjct: 495 CGCLLSVVALSSGDETEVILACLEKVRSNLVKLIRMLGDARVGVEDLRVELKGILNSAAP 554

Query: 331 DDR--FCGCLLNV 341
           + R  +C CL+++
Sbjct: 555 EVRRPYCNCLIDI 567


>gi|255557625|ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540888|gb|EEF42446.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 165/443 (37%), Positives = 254/443 (57%), Gaps = 47/443 (10%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G VE    LY+R     W+ DP  FS L K++G AG++DG   V +EMK++ V+PN++
Sbjct: 279 KLGRVEEVLSLYERGVASGWKPDPITFSVLAKMFGEAGDYDGIRYVLQEMKSLAVQPNVV 338

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LL+ MG+A +P   ++++ EM ++GL+PN  T  +L + YG+AR+ +D + ++  M
Sbjct: 339 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPNEKTLTALAKIYGKARWAKDAMELWERM 398

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +     +   LYNTLL+MCAD+G   EA  +FEDMK SE+C            IC     
Sbjct: 399 RSNDWPMDFILYNTLLSMCADLGMEKEAETLFEDMKRSEHCS----------QIC----- 443

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
                                         GKA R DD+VR  N   E G+ PDDR CGC
Sbjct: 444 -----------------------------LGKANRVDDLVRVFNFSMERGVNPDDRLCGC 474

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           LL+V++   + E++ K++ C++ +N KL  +VKL+ EE+      K+E   + +  + + 
Sbjct: 475 LLSVVSLCEESEDVDKVLACLQVANPKLVALVKLIAEEESSFETVKEEFKAIVSDTAVEA 534

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
           ++ +CNCLID+C N NL   A +LL LG    +Y D+ +++  +WSL ++SLS+GAA TA
Sbjct: 535 RRPFCNCLIDVCRNRNLHGRAHELLYLGSLYGLYPDLHNKTEDEWSLDVRSLSVGAAHTA 594

Query: 457 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKV 516
           L  W+  L K ++  E  P +   +TG G HK+S +GLA+ F SH+++L APF  S +K 
Sbjct: 595 LEEWMGTLVKFVQRNEALPEIFSAHTGTGTHKFS-QGLANAFASHVEKLAAPFRQSEEKA 653

Query: 517 GWFLTTEAAAKSWLESRS-SLVS 538
           G F+ T     +W +SRS SL++
Sbjct: 654 GCFVATREDLVTWAQSRSPSLIT 676



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 148/367 (40%), Gaps = 49/367 (13%)

Query: 72  SSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 131
           S P S  WVNP  P+ S L                    R +   + ++P      ++L+
Sbjct: 98  SKPNS-TWVNPTKPKRSVLS-----------------LQRQKRSPYSLNPKVKE--LRLF 137

Query: 132 GTAGNFDGC-------LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE--M 182
             A   + C       L++ E++      P  +T  N L  +  + RPWQ   ++     
Sbjct: 138 --AQKLNDCDSTESSFLSLLEQI------PYPLTRENALLILN-SLRPWQKAHLFFNWIK 188

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           T N        Y   +++    R  E    +  EM    ++L    Y+T++         
Sbjct: 189 TQNSFPVETIFYNVTMKSLRFGRQFELIDKLANEMVSNEIELDNITYSTIITCAKRCNRF 248

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A E FE M  +    PD  T+S+++ + +  G+V E  +++   + +G++P+    + 
Sbjct: 249 DMALEWFERMYKT-GLMPDEVTYSAILDVYAKLGRVEEVLSLYERGVASGWKPDPITFSV 307

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--ECVEKS 360
           L + +G+A   D +   L  +  L + P+      LL  M +  K  L + +  E VE  
Sbjct: 308 LAKMFGEAGDYDGIRYVLQEMKSLAVQPNVVVYNTLLEAMGKAGKPGLARSLFDEMVE-- 365

Query: 361 NSKLGYVVKLLLEEQDIEGDFK--KEATELFNSI-SKDVKKAYC--NCLIDLCVNLNLLE 415
            S L    K L     I G  +  K+A EL+  + S D    +   N L+ +C +L + +
Sbjct: 366 -SGLTPNEKTLTALAKIYGKARWAKDAMELWERMRSNDWPMDFILYNTLLSMCADLGMEK 424

Query: 416 NACKLLE 422
            A  L E
Sbjct: 425 EAETLFE 431


>gi|297736720|emb|CBI25756.3| unnamed protein product [Vitis vinifera]
          Length = 201

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 142/184 (77%), Positives = 161/184 (87%)

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           K S NC PDSWTFSS+ITI SC GKV EAEAM N MLEAGFEPN+FVLTSLIQCYGKA R
Sbjct: 4   KGSGNCMPDSWTFSSLITIYSCSGKVPEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANR 63

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLL 372
           TD+VVR  +RL EL ITPDDRFCGC+LNVMTQ+PKEELGKL++C++K+N KLG VVKLLL
Sbjct: 64  TDEVVRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLL 123

Query: 373 EEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432
           EEQ+ EG F+KEA+ELF+SIS DVKKAYCNCLIDLCVNLNLLE AC+L +LGLTLE+Y D
Sbjct: 124 EEQNGEGTFRKEASELFDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYID 183

Query: 433 IQSR 436
           I  +
Sbjct: 184 IHHQ 187


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 243/439 (55%), Gaps = 4/439 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  LY+R +   W+ D   + T+++L+G AG     ++++EEMK  GV+P+ I
Sbjct: 125 KMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAI 184

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN ++  +GRA R      +++EM   G+ PN  T ++++  Y R     + L V++ +
Sbjct: 185 VYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRL 244

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G+   V +YN +L MC + G   EA +   +M  S + QP+ WT+ +MI++ + +G 
Sbjct: 245 RQ-GVACDVIVYNAVLKMCREAGLASEAEQYLREMTESGH-QPNDWTYRNMISVYAKKGM 302

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             EA   F++M+EAG++ ++   TSL+Q YG A+  + V   L+ +  +   PD+R C  
Sbjct: 303 AVEAHRTFSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPDERLCCV 362

Query: 338 LLNVMTQT-PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           +LN++      EELG L  C+   +S +  +V  + EE  +  + + E   L + I+++ 
Sbjct: 363 ILNLLDSCDTDEELGILRSCLRMCSSTMDTIVGQIFEENLVLRELRGELQSLLSDITEEA 422

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
            K  CN L+ L  +     ++ +LL L   L VYT +Q++SPT WSLHL+SLS GAA  A
Sbjct: 423 HKPICNSLMQLSWHKGDRNHSFQLLSLFRVLGVYTGLQTKSPTMWSLHLRSLSTGAAHCA 482

Query: 457 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDK-GLASVFESHLKELNAPFHDSPDK 515
           L  W++ +  A++ G+E P  + I TG G    +D+  L  V  S LKE ++PF +  D+
Sbjct: 483 LLSWLSSVRYAIKEGQELPGRIIIETGVGNQLNADEFRLIVVISSLLKECSSPFKECADR 542

Query: 516 VGWFLTTEAAAKSWLESRS 534
             W   +      WLES S
Sbjct: 543 KDWLEASGVDVTQWLESTS 561



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 100/208 (48%), Gaps = 2/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ ++K+      ++    + E+M    V+P+ ITY+ L+    R          +  M 
Sbjct: 46  YNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNITYSTLISCANRCNYQDAAMAWFDRMH 105

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G  P+  TY++++  YG+    ++ +++Y  +K+ G +     Y T++ +    GY  
Sbjct: 106 EAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLFGRAGYIR 165

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A  IFE+MK S   QPD+  ++ MI      G++  A  +F EM   G +PN   L+++
Sbjct: 166 AAVSIFEEMKGS-GVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTV 224

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++ Y +     + +    RL + G+  D
Sbjct: 225 METYSRCGNVMEGLEVFQRLRQ-GVACD 251



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 3/178 (1%)

Query: 155 NMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           N+ TYN +L  + R  R W+  + I ++M +  + P+  TY++L+    R  Y +  ++ 
Sbjct: 42  NIYTYNVMLKVLRRG-RQWEFSQQIAEDMANADVRPDNITYSTLISCANRCNYQDAAMAW 100

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           +  M E G    V  Y+T++ +   +G  DEA  ++E +K +   +PD  T+ +M+ +  
Sbjct: 101 FDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQA-GWKPDKVTYGTMVRLFG 159

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G +  A ++F EM  +G +P+  V   +I C G+A R    ++    +   G+ P+
Sbjct: 160 RAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPN 217



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           S N  TY  +L+   R R  E +  +  +M    ++     Y+TL++      Y D A  
Sbjct: 40  SLNIYTYNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNITYSTLISCANRCNYQDAAMA 99

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
            F+ M  +  C PD  T+S+MI +    GK  EA A++  + +AG++P+     ++++ +
Sbjct: 100 WFDRMHEA-GCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLF 158

Query: 308 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 367
           G+A      V     +   G+ PD      + N+M           + C+ ++  ++G+ 
Sbjct: 159 GRAGYIRAAVSIFEEMKGSGVQPD----AIVYNIM-----------IACLGRAG-RMGHA 202

Query: 368 VKLLLEEQDIEG 379
           +K + EE + EG
Sbjct: 203 LK-VFEEMEREG 213



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 72/133 (54%), Gaps = 4/133 (3%)

Query: 211 LSVYREMK-EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           L ++R ++ E    L++  YN +L +       + + +I EDM ++ + +PD+ T+S++I
Sbjct: 27  LLLFRWLRAEHSSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMANA-DVRPDNITYSTLI 85

Query: 270 TICSCRGKVSEAE-AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           + C+ R    +A  A F+ M EAG  P++   +++I  YGK  + D+ +    R+ + G 
Sbjct: 86  S-CANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGW 144

Query: 329 TPDDRFCGCLLNV 341
            PD    G ++ +
Sbjct: 145 KPDKVTYGTMVRL 157


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/437 (29%), Positives = 228/437 (52%), Gaps = 4/437 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  LY+  +   W+ D   + T+++L+G AG     +++++EMK  G++P  +
Sbjct: 125 KVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSV 184

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN ++  +GRA R      +++EM   G+ PN  T ++++  Y R+    + L ++  M
Sbjct: 185 VYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHM 244

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++  +   + +YN ++ MC + G   EA +   +M    + QP+ WT+ +MI++ +  G 
Sbjct: 245 RQD-LACDIIVYNAVIKMCREAGLVPEAEQYLREMVEYGH-QPNDWTYRNMISLYAKNGM 302

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             EA+ MF++++EAG++P++   TSL+Q YG A+  + V   L+ +      PD+R    
Sbjct: 303 AVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEMVSANCAPDERLWCV 362

Query: 338 LLNVMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           +LN++     + E   L  C+   N  +  +V  + EE  +          L + ++++ 
Sbjct: 363 ILNLLDACDTDVEFEILRSCLRMCNPTMDNIVGHIFEENLVLKKLGDGLQSLLSDMAEEA 422

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
            K  CN L+ L  +      A KLL L  +  VYT +Q++S   WSLHLKSLS GAA  A
Sbjct: 423 HKPICNSLLQLIWHKGDRNYAFKLLSLFCSSGVYTGLQTKSSIMWSLHLKSLSTGAAHCA 482

Query: 457 LHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDK-GLASVFESHLKELNAPFHDSPDK 515
           L  W++ +  A++ G+E P    I TG G    +D+  L  V  S LKE  +PF +  D+
Sbjct: 483 LLSWLSSVRYAIQEGQELPSRFMIETGVGNQLNADELRLVVVISSLLKEFTSPFIECVDR 542

Query: 516 VGWFLTTEAAAKSWLES 532
             W   +    + WLE+
Sbjct: 543 KDWLEASGVDVRQWLET 559



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-AEAMFNEMLEAGFEPNLFVLTSL 303
           A  +F+ +++ +N   + +T++ M+ +   RG+  E ++ +  +M+ AG  P+    ++L
Sbjct: 26  ALSLFKWLQAEQNFNLNIYTYNVMLKVLR-RGQQWELSQQIAEDMINAGIRPDNITYSTL 84

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 362
           I C  +    D  +   +R+ +    PD      +++V  +  K +E   L E V+KS  
Sbjct: 85  ISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGW 144

Query: 363 K 363
           K
Sbjct: 145 K 145


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 240/444 (54%), Gaps = 7/444 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V  A  LY++ ++  W++D   +  +  +Y  AG++   + + +EM+  G  PN +
Sbjct: 225 RVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAV 284

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N L+ T+ +A +  Q K ++ EM  +G+SP   T + L+  Y R    +    VY  +
Sbjct: 285 IMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETL 344

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K +G +  V +YN+L+  C + G  ++A +I ++MK +  C PD  T+ + +   + +G 
Sbjct: 345 KTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRA-GCNPDHLTYRTAMNTYATKGM 403

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCG 336
           V  A  MF++++    +P+  + T +I+    A   +   +  + + E G  +PD+R  G
Sbjct: 404 VDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSG 463

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-DFKKEATELFNS--I 392
            LL+ M      +E   +++C++K N+ L  ++  ++ +++    D   E  E F S   
Sbjct: 464 MLLSCMAMAKNDDERLAILDCLDKFNAPLHELMSAIVRKEEPRSRDEVAEMVEKFISDYP 523

Query: 393 SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGA 452
             D +K  CNCLID+C ++ +   A K+  +G+ +  Y  +Q+  P+ W L+L++LS+ A
Sbjct: 524 ETDSRKPLCNCLIDICSSVGMKHAAHKIFAMGVAVGAYDGLQTNLPSLWRLNLRTLSMPA 583

Query: 453 ALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDS 512
           A  A+  W++ L  A+  G+E P  L I TG G+ + S + L  +  + LK+L APF ++
Sbjct: 584 AECAIEAWVSSLKAAVREGDELPEDLIIETGVGRVR-SGQRLNPIVGTLLKKLGAPFTEN 642

Query: 513 PDKVGWFLTTEAAAKSWLESRSSL 536
            +  G++ +T AA ++W+++R +L
Sbjct: 643 TEPAGYYCSTGAAVEAWIKARIAL 666



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 105/211 (49%), Gaps = 1/211 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +AF  + +AR E + I+   ++ ++K+       +    + EEM   G++P+  T++ L+
Sbjct: 126 LAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLI 185

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
           +   R ++P +    ++ M   G+ P+  TY S++  YGR     + + +Y ++K    +
Sbjct: 186 NCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWK 245

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           L    Y  +  + A  G      ++ ++M+ S    P++   ++++   S  GKV++A+ 
Sbjct: 246 LDTVTYGAIANVYARAGDYQSIIQLVQEMRDS-GSSPNAVIMNTLMGTLSKAGKVNQAKK 304

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           +FNEM  +G  P    L+ L++ Y +    D
Sbjct: 305 VFNEMRTSGVSPTPVTLSILVEMYTRVGAYD 335



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 4/247 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG V  A  +++  R       P   S L+++Y   G +D    VYE +K  G K ++
Sbjct: 294 SKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDV 353

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN+L+       R  Q + I KEM   G +P+  TY + +  Y      +    ++ +
Sbjct: 354 AVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDK 413

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +     +    L+  ++  C   G  ++A +IF++M  S  C PD    S M+  C    
Sbjct: 414 VVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDE-RVSGMLLSCMAMA 472

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--F 334
           K  +      + L+  F   L  L S I    + +  D+V   + +        D R   
Sbjct: 473 KNDDERLAILDCLDK-FNAPLHELMSAIVRKEEPRSRDEVAEMVEKFISDYPETDSRKPL 531

Query: 335 CGCLLNV 341
           C CL+++
Sbjct: 532 CNCLIDI 538



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGKVSEAEAMFNE 287
           YN +L +  +    + + ++ E+M +    QPD++TFS++I     CR +  EA   F  
Sbjct: 146 YNVMLKILRNGRQLELSEKLVEEM-TGRGIQPDNYTFSTLINCAKRCR-QPEEALKWFER 203

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           M   G  P+     S+I  YG+  R ++ V    +L  +    D    G + NV  +   
Sbjct: 204 MKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGD 263

Query: 348 -EELGKLVECVEKSNSKLGYVV 368
            + + +LV+ +  S S    V+
Sbjct: 264 YQSIIQLVQEMRDSGSSPNAVI 285



 Score = 42.0 bits (97), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/128 (19%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 232 LLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           ++ +  ++   ++A   FE +K+  E  + + +T++ M+ I     ++  +E +  EM  
Sbjct: 112 IVTVLNNINRWEKALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEEMTG 171

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 350
            G +P+ +  ++LI C  + ++ ++ ++   R+   GI PD+     ++++  +     +
Sbjct: 172 RGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGR-----V 226

Query: 351 GKLVECVE 358
           G++ E VE
Sbjct: 227 GRVNEAVE 234


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 240/444 (54%), Gaps = 7/444 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V  A  LY++ ++  W++D   +  +  +Y  AG++   + + +EM+  G  PN +
Sbjct: 225 RVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAV 284

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N L+ T+ +A +  Q K ++ EM  +G+SP   T + L+  Y R    +    VY  +
Sbjct: 285 IMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETL 344

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K +G +  V +YN+L+  C + G  ++A +I ++MK +  C PD  T+ + +   + +G 
Sbjct: 345 KTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRA-GCNPDHLTYRTAMNTYATKGM 403

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCG 336
           V  A  MF++++    +P+  + T +I+    A   +   +  + + E G  +PD+R  G
Sbjct: 404 VDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSG 463

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-DFKKEATELFNS--I 392
            LL+ M      +E   +++C++K N+ L  ++  ++ +++    D   E  E F S   
Sbjct: 464 MLLSCMAMAKSDDERLAILDCLDKFNAPLHELMSAIVRKEEPRSRDEVAEMVEKFISDYP 523

Query: 393 SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGA 452
             D +K  CNCLID+C ++ +   A K+  +G+ +  Y  +Q+  P+ W L+L++LS+ A
Sbjct: 524 ETDSRKPLCNCLIDICSSVGMKHAAHKIFAMGVAVGAYDGLQTNLPSLWRLNLRTLSMPA 583

Query: 453 ALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDS 512
           A  A+  W++ L  A+  G+E P  L I TG G+ + S + L  +  + LK+L APF ++
Sbjct: 584 AECAIEAWVSSLKAAVREGDELPEDLIIETGVGRVR-SGQRLNPIVGTLLKKLGAPFTEN 642

Query: 513 PDKVGWFLTTEAAAKSWLESRSSL 536
            +  G++ +T AA ++W+++R +L
Sbjct: 643 TEPAGYYCSTGAAVEAWIKARIAL 666



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 105/211 (49%), Gaps = 1/211 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +AF  + +AR E + I+   ++ ++K+       +    + EEM   G++P+  T++ L+
Sbjct: 126 LAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLI 185

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
           +   R ++P +    ++ M   G+ P+  TY S++  YGR     + + +Y ++K    +
Sbjct: 186 NCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWK 245

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           L    Y  +  + A  G      ++ ++M+ S    P++   ++++   S  GKV++A+ 
Sbjct: 246 LDTVTYGAIANVYARAGDYQSIMQLVQEMRDS-GSSPNAVIMNTLMGTLSKAGKVNQAKK 304

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           +FNEM  +G  P    L+ L++ Y +    D
Sbjct: 305 VFNEMRTSGVSPTPVTLSILVEMYTRVGAYD 335



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 4/247 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG V  A  +++  R       P   S L+++Y   G +D    VYE +K  G K ++
Sbjct: 294 SKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDV 353

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN+L+       R  Q + I KEM   G +P+  TY + +  Y      +    ++ +
Sbjct: 354 AVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDK 413

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +     +    L+  ++  C   G  ++A +IF++M  S  C PD    S M+  C    
Sbjct: 414 VVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDE-RVSGMLLSCMAMA 472

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--F 334
           K  +      + L+  F   L  L S I    + +  D+V   + +        D R   
Sbjct: 473 KSDDERLAILDCLDK-FNAPLHELMSAIVRKEEPRSRDEVAEMVEKFISDYPETDSRKPL 531

Query: 335 CGCLLNV 341
           C CL+++
Sbjct: 532 CNCLIDI 538



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGKVSEAEAMFNE 287
           YN +L +  +    + + ++ E+M +    QPD++TFS++I     CR +  EA   F  
Sbjct: 146 YNVMLKILRNGRQLELSEKLVEEM-TGRGIQPDNYTFSTLINCAKRCR-QPEEALKWFER 203

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           M   G  P+     S+I  YG+  R ++ V    +L  +    D    G + NV  +   
Sbjct: 204 MKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGD 263

Query: 348 -EELGKLVECVEKSNSKLGYVV 368
            + + +LV+ +  S S    V+
Sbjct: 264 YQSIMQLVQEMRDSGSSPNAVI 285



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/128 (19%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 232 LLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           ++ +  ++   ++A   FE +K+  E  + + +T++ M+ I     ++  +E +  EM  
Sbjct: 112 IVTVLNNINRWEKALAFFEWLKARPELYEINRYTYNVMLKILRNGRQLELSEKLVEEMTG 171

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 350
            G +P+ +  ++LI C  + ++ ++ ++   R+   GI PD+     ++++  +     +
Sbjct: 172 RGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGR-----V 226

Query: 351 GKLVECVE 358
           G++ E VE
Sbjct: 227 GRVNEAVE 234


>gi|302786806|ref|XP_002975174.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
 gi|300157333|gb|EFJ23959.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
          Length = 555

 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 132/444 (29%), Positives = 224/444 (50%), Gaps = 9/444 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  LY   R   W+ D  +F  +  +Y   G++   L ++ +M+   +KPN++
Sbjct: 111 KAGRTAEAMDLYQTMRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVV 170

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N L+ T+GRA +    K ++ EM   GL P+  T + L+  Y +    +  L VY  +
Sbjct: 171 LFNTLIGTLGRAGKVTLAKGMFDEMASYGLEPSEITLSILIDMYTKVGALDKALDVYDTI 230

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+K  +L V +YNTLL  C + G    A  +  +M+  E   PD  T+  ++ + + +G 
Sbjct: 231 KQKKWKLDVLVYNTLLKSCVESGNIQRAESLIAEME-REKQWPDHMTYGILMNVYATKGM 289

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V+E  AMF+++      P     T LI+   +A   D +    + +   G + ++R  G 
Sbjct: 290 VAEVRAMFDKLKNLAVFPKAAFYTMLIKASKQAGDFDRIPGIFDEMIANGCSVNERMSGM 349

Query: 338 LLNVM--TQTPKEELGKLVECVEKSNSKLGYVVKLLL---EEQDIEGDFKKEATE-LFNS 391
           L++    +Q   E    ++ECV+K   +L  ++  LL   +E D   D   E TE L   
Sbjct: 350 LVSCASSSQISDETRLGVLECVKKIKPRLHELLSRLLVLAKEDDDFDDIASETTEFLLRE 409

Query: 392 ISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLG 451
           I+   ++  CN +ID C  L     A  +L  G++  +Y  + +  P+ W L+L++LS  
Sbjct: 410 ITAPSRRPMCNAVIDFCCVLGSRNAARAILSSGVSAGLYHGLHTTLPSLWQLNLRTLSFA 469

Query: 452 AALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDK--GLASVFESHLKELNAPF 509
           AA  AL  WI  L+ A E+G+EFP  L + TG G+ K +     L+      LK +++PF
Sbjct: 470 AAECALEAWIESLATAAENGDEFPEDLMVETGTGRAKEATNSVSLSEFVGGVLKGMDSPF 529

Query: 510 HDSPDKVGWFLTTEAAAKSWLESR 533
            ++    G+F+ +  AAK+WL+SR
Sbjct: 530 EENRRPGGYFIASGEAAKAWLQSR 553



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 1/209 (0%)

Query: 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
           F  + R+R +   I   A++ ++KL      +     + +EM    + P+  T++  +  
Sbjct: 14  FFRWARSRRDVCEITVFAYNMMLKLLRDGEQWSLSEELLKEMLEERIMPDNYTFSIFVSC 73

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
             R  +       +  + + G+S +  TY++++  YG+A    + + +Y+ M++   +  
Sbjct: 74  SKRCDQAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPD 133

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           +  +  +  + + VG       +F DM+ +E  +P+   F+++I      GKV+ A+ MF
Sbjct: 134 LVSFGVIANVYSRVGDYQAILRLFRDMEQAE-IKPNVVLFNTLIGTLGRAGKVTLAKGMF 192

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           +EM   G EP+   L+ LI  Y K    D
Sbjct: 193 DEMASYGLEPSEITLSILIDMYTKVGALD 221


>gi|302791627|ref|XP_002977580.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
 gi|300154950|gb|EFJ21584.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
          Length = 555

 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 130/444 (29%), Positives = 223/444 (50%), Gaps = 9/444 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  LY   R   W+ D  +F  +  +Y   G++   L ++ +M+   +KPN++
Sbjct: 107 KAGRTAEAMDLYQTMRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVV 166

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N L+ T+GRA +    K ++ EM   GL P+  T + L+  Y +    +  L VY  +
Sbjct: 167 LFNTLIGTLGRAGKVTLAKGMFDEMATYGLEPSEITLSILIDMYTKVGALDKALDVYDTI 226

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+K  +L V +YNTLL  C + G    A  +  +M+  E   PD  T+  ++ + + +G 
Sbjct: 227 KQKKWKLDVLVYNTLLKSCVESGNIQRAESLIAEME-MEKQWPDHMTYGILMNVYATKGM 285

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V+E  AMF+++      P     T LI+   +A   D +    + +   G + ++R  G 
Sbjct: 286 VAEVRAMFDKLKNLAVFPKAAFYTMLIKASKQAGDFDRIPGIFDEMVANGCSVNERMSGM 345

Query: 338 LLNVM--TQTPKEELGKLVECVEKSNSKLGYVVKLLL---EEQDIEGDFKKEATE-LFNS 391
           L++    +Q   E    ++ECV+K   +L  ++  LL   +E D   D   E TE L   
Sbjct: 346 LVSCASSSQISDETRLGVLECVKKIKPRLHELLSRLLVLAKEDDDFDDIASETTEFLLRE 405

Query: 392 ISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLG 451
           I+   ++  CN +ID C  L     A  +L  G++  +Y  + +  P+ W L+L++LS  
Sbjct: 406 ITAPSRRPMCNAVIDFCCVLGSRNAARAILSSGVSAGLYHGLHTTLPSLWQLNLRTLSFA 465

Query: 452 AALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDK--GLASVFESHLKELNAPF 509
            A  AL  WI  L+ A E+G+EFP  + + TG G+ K +     L+      LK +++PF
Sbjct: 466 GAECALEAWIESLATAAENGDEFPEDVMVETGTGRAKEATNSVSLSEFVGGVLKGMDSPF 525

Query: 510 HDSPDKVGWFLTTEAAAKSWLESR 533
            ++    G+F+ +  AAK+WL+SR
Sbjct: 526 EENRRPGGYFIASGEAAKAWLQSR 549



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 1/209 (0%)

Query: 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
           F  + R+R +   I   A++ ++KL      +     + +EM    + P+  T++  +  
Sbjct: 10  FFRWARSRRDVCEITVFAYNMMLKLLRDGEQWSLSEVLLKEMLEERIMPDNYTFSIFVSC 69

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
             R  R       +  + + G+S +  TY++++  YG+A    + + +Y+ M++   +  
Sbjct: 70  SKRCDRAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPD 129

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           +  +  +  + + VG       +F DM+ +E  +P+   F+++I      GKV+ A+ MF
Sbjct: 130 LVSFGVIANVYSRVGDYQAILRLFRDMEQAE-IKPNVVLFNTLIGTLGRAGKVTLAKGMF 188

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           +EM   G EP+   L+ LI  Y K    D
Sbjct: 189 DEMATYGLEPSEITLSILIDMYTKVGALD 217



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 89/191 (46%), Gaps = 3/191 (1%)

Query: 156 MITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  YN +L  + R    W + + + KEM +  + P+  T++  +    R    ED ++ +
Sbjct: 25  VFAYNMMLKLL-RDGEQWSLSEVLLKEMLEERIMPDNYTFSIFVSCSKRCDRAEDAIAWF 83

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             ++E G+      Y+ ++ +    G T EA ++++ M+ + N +PD  +F  +  + S 
Sbjct: 84  HRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKN-NWKPDLVSFGVIANVYSR 142

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G       +F +M +A  +PN+ +  +LI   G+A +        + +   G+ P +  
Sbjct: 143 VGDYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGKVTLAKGMFDEMATYGLEPSEIT 202

Query: 335 CGCLLNVMTQT 345
              L+++ T+ 
Sbjct: 203 LSILIDMYTKV 213



 Score = 39.7 bits (91), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 244 EAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           EA + F   +S  + C+   + ++ M+ +     + S +E +  EMLE    P+ +  + 
Sbjct: 6   EALDFFRWARSRRDVCEITVFAYNMMLKLLRDGEQWSLSEVLLKEMLEERIMPDNYTFSI 65

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361
            + C  +  R +D +   +RL E G++ D      ++++  +  +  E   L + + K+N
Sbjct: 66  FVSCSKRCDRAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNN 125

Query: 362 SK 363
            K
Sbjct: 126 WK 127


>gi|224089797|ref|XP_002308815.1| predicted protein [Populus trichocarpa]
 gi|222854791|gb|EEE92338.1| predicted protein [Populus trichocarpa]
          Length = 129

 Score =  191 bits (486), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 82/120 (68%), Positives = 99/120 (82%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNVE A  LYDRAR  +WR+D   FSTLI++Y  AGNFDGCLNVYEEMKA+GVKPN++
Sbjct: 7   RAGNVEKALSLYDRARTGEWRLDATTFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLV 66

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LLD MGRAKRPWQVK  Y+++ D+GLSP++ TYA+LL AYGRARYG+D   +YR+M
Sbjct: 67  IYNILLDAMGRAKRPWQVKKFYQDIIDSGLSPSFVTYAALLHAYGRARYGDDAFKIYRKM 126



 Score = 51.6 bits (122), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           ++ +YGRA   E  LS+Y   +    +L  T ++TL+ +    G  D    ++E+MK+  
Sbjct: 1   MIDSYGRAGNVEKALSLYDRARTGEWRLDATTFSTLIRIYKVAGNFDGCLNVYEEMKAL- 59

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             +P+   ++ ++       +  + +  + +++++G  P+     +L+  YG+A+  DD 
Sbjct: 60  GVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDSGLSPSFVTYAALLHAYGRARYGDDA 119

Query: 317 VRALNRL 323
            +   ++
Sbjct: 120 FKIYRKM 126



 Score = 40.8 bits (94), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A  +++  ++ E  + D+ TFS++I I    G       ++ EM   G +PNL +
Sbjct: 9   GNVEKALSLYDRARTGE-WRLDATTFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVI 67

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              L+   G+A+R   V +    + + G++P
Sbjct: 68  YNILLDAMGRAKRPWQVKKFYQDIIDSGLSP 98


>gi|413918172|gb|AFW58104.1| hypothetical protein ZEAMMB73_609509 [Zea mays]
          Length = 561

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 125/199 (62%), Gaps = 8/199 (4%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           +YD   GN E A     RAR EKW++DP    T+ +++ T+GNF+  LN+++EMKA GV 
Sbjct: 270 TYD-HTGNFEAAL---RRARAEKWQLDPVLCCTVNEVHSTSGNFNRALNLFKEMKATGVN 325

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN++  N  L  MG A +PW VK+I++EM D  +  N  TY  LL AY RA Y ED ++V
Sbjct: 326 PNLVMCNTRLYVMGHALQPWVVKSIHREMIDKQVQHNKVTYCCLLHAYTRAHYDEDAMAV 385

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--ENCQPDSWTFSSMITI 271
           YR MK++ M   V LYN LL+   D+GY DEA EIF DMK+S  +  +PD W++SSM+  
Sbjct: 386 YRLMKDEAMD--VMLYNMLLSRYVDIGYVDEAEEIFRDMKASMDDRSKPDKWSYSSMLRQ 443

Query: 272 CSCRGKVSEAEAMFNEMLE 290
            S    V   E + NEM+E
Sbjct: 444 YSSTANVLGVEGILNEMVE 462


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 212/452 (46%), Gaps = 32/452 (7%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A GLY   +    R D  +++TLI +Y   G FD  L   ++M+ +G+K +++TY
Sbjct: 389 GCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTY 448

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D  G+  +      ++ +M   GL PN  TY++L+ AY +A   +D  S++ E K 
Sbjct: 449 NALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKR 508

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++  V LY++L+  C   G  ++A  + ++M +    QP+  T++S+I      G+V 
Sbjct: 509 AGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEM-TQAGIQPNIVTYNSLIDAYGRNGQVD 567

Query: 280 EAEA--------MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD------VVRALNRLPE 325
             EA        +FN++ +   E     LTS        Q  +D       V   + + +
Sbjct: 568 NVEAAKGNMPINVFNKVGDRSTEIICKTLTS-------QQNANDHTGVLAAVSVFHEMQQ 620

Query: 326 LGITPDDRFCGCLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384
            G+ P+      +LN  ++ +  +E   L+E +   +S +  +   LL    +      E
Sbjct: 621 FGLKPNVVTFSAILNACSRCSSLQEASVLLEQMRFFDSWVYGIAHGLL--MGLREHVWVE 678

Query: 385 ATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQW 441
           A  LF+ I++       A+ N L D+  +    + A +++      +V+ +   RS  Q+
Sbjct: 679 AQRLFDEIARMDYATGAAFYNALTDVLWHFGQRQGAQEVVVAAKRRQVWENAWWRSEQQF 738

Query: 442 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASV---F 498
            L L  +S+GAA   LH+W+ DL   +  G   P +L I TG GKH     G ++V    
Sbjct: 739 CLDLHLMSVGAAQAMLHVWLLDLRALVWDGHALPRVLSILTGWGKHS-KVAGFSTVKRAV 797

Query: 499 ESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 530
           ES L E+ APF       G  +      ++WL
Sbjct: 798 ESRLLEIKAPFQVGRYNEGRLVCAGHIVRAWL 829



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 157/330 (47%), Gaps = 6/330 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE+A  +++RA+   +  +  A+S ++  YG +G     L V++ MK  G KPN+I
Sbjct: 211 RLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLI 270

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D  G+      +   I++EM   G+ P+  T+ SL+    R    ED+  V+ E
Sbjct: 271 TYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAE 330

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+ +G++  +  YNTL+      G  + A  I   M+  +N  P+  T+S+MI      G
Sbjct: 331 MQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMR-LKNISPNVVTYSTMIDGYGKLG 389

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              EA  ++++M E+G  P+     +LI  Y K  R DD + A   +  +G+  D     
Sbjct: 390 CFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYN 449

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            L++   +  K ++   L + ++        +    L +   +    ++AT +F    + 
Sbjct: 450 ALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRA 509

Query: 396 VKK---AYCNCLIDLCVNLNLLENACKLLE 422
             K      + LID C    L+E+A  LL+
Sbjct: 510 GLKPDVVLYSSLIDSCCKCGLVEDAVVLLQ 539



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 19/264 (7%)

Query: 100 GNVEM--AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G V++  A  +++  + E    D   F++LI +      ++    V+ EM+  G++ ++ 
Sbjct: 282 GGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIF 341

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D + +  +     +I   M    +SPN  TY++++  YG+    E+ + +Y +M
Sbjct: 342 TYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDM 401

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G++     YNTL+ + A +G  D+A    +DM+     + D  T++++I     +GK
Sbjct: 402 KESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERV-GLKADVVTYNALIDAYGKQGK 460

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD------ 331
             +A  +F++M   G  PN+   ++LI  Y KA    D           G+ PD      
Sbjct: 461 YKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSS 520

Query: 332 --DRFCGC--------LLNVMTQT 345
             D  C C        LL  MTQ 
Sbjct: 521 LIDSCCKCGLVEDAVVLLQEMTQA 544



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 9/224 (4%)

Query: 115 EKWR---IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT--YNNLLDTMGRA 169
           EKW    +    F  L++  G  G ++  L  YE M   G   +  +   + ++ T+GR 
Sbjct: 153 EKWSHQLVGLEDFPYLLRELGNRGEWERALQGYEWMVQQGHLRSEWSKLASIMISTLGRL 212

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
            +      ++      G   N   Y++++ AYGR+    + L V++ MK+ G + ++  Y
Sbjct: 213 GKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITY 272

Query: 230 NTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-AEAMFNE 287
           NT++  C   G    +A +IFE+M+  E  +PD  TF+S+I +CS RG + E ++ +F E
Sbjct: 273 NTIIDACGKGGVDLKKALDIFEEMQ-KEGVEPDRITFNSLIAVCS-RGSLWEDSQRVFAE 330

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M   G E ++F   +LI    K  + +     ++ +    I+P+
Sbjct: 331 MQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPN 374



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 37/248 (14%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG  + A  ++   +    + D   +S+LI      G  +  + + +EM   G++PN+
Sbjct: 491 SKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNI 550

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP-----------------NWNTYASLLR 199
           +TYN+L+D  GR  +   V+     M  N  +                  N N +  +L 
Sbjct: 551 VTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHTGVLA 610

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
           A          +SV+ EM++ G++ +V  ++ +L  C+      EA  + E M+      
Sbjct: 611 A----------VSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVLLEQMRFF---- 656

Query: 260 PDSWTFS-SMITICSCRGKV-SEAEAMFNEMLEAGFEPNLF---VLTSLIQCYGKAQRTD 314
            DSW +  +   +   R  V  EA+ +F+E+    +         LT ++  +G+ Q   
Sbjct: 657 -DSWVYGIAHGLLMGLREHVWVEAQRLFDEIARMDYATGAAFYNALTDVLWHFGQRQGAQ 715

Query: 315 DVVRALNR 322
           +VV A  R
Sbjct: 716 EVVVAAKR 723


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 214/483 (44%), Gaps = 56/483 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G +E+A  +    R +   I PN   +ST+I  YG  G F+  +++Y +MK  GV+P+
Sbjct: 353 KGGQMELAASIMTTMRGKN--ISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPD 410

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            ++YN L+D   +  R        K+M   GL  +  TY +L+ AYG+    +D   ++ 
Sbjct: 411 RVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFD 470

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +MK +G+  +V  Y+ L+   +  G   +   +F + K +   +PD   +SS+I  C   
Sbjct: 471 KMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRA-GLKPDVVLYSSLIDSCCKC 529

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK---------------------AQRTD 314
           G V +A  +  EM +AG +PN+    SLI  YG+                      +R+ 
Sbjct: 530 GLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSM 589

Query: 315 DVVR--------------------ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKL 353
           +VVR                      + + + G+ P+      +LN  ++    +E   L
Sbjct: 590 EVVRKPPPSQQNASDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVL 649

Query: 354 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVN 410
           +E +   +  +  +   LL    +      EA  LF+ IS+       A+ N L D+  +
Sbjct: 650 LEQMRFFDGWVYGIAHGLL--MGLREQVWVEAQRLFDEISRMDYATGAAFYNALTDVLWH 707

Query: 411 LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 470
               + A +++      +V+ +   RS  Q+ L L  +S+GAA   LH+W+ DL   +  
Sbjct: 708 FGQRQGAQEVVVAAKRRQVWENAWWRSEQQFCLDLHLMSVGAAQAMLHVWLLDLRALVWD 767

Query: 471 GEEFPPLLGINTGHGKHKYSDKGLASV---FESHLKELNAPFHDSPDKVGWFLTTEAAAK 527
           G   P +L I TG GKH     G+++V    E  L+E+ APF       G  +      +
Sbjct: 768 GHALPRVLSILTGWGKHS-KVAGVSTVKRAVELRLQEIKAPFQVGRYNEGRLVCAGHIVR 826

Query: 528 SWL 530
            WL
Sbjct: 827 EWL 829



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 157/333 (47%), Gaps = 12/333 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE+A  +++RA+   +  +  A+S ++  YG +G     L V++ MK  G KPN+I
Sbjct: 212 RLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLI 271

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D  G+      Q   I+ EM   G+ P+  T+ SL+    R    ED+  V+ E
Sbjct: 272 TYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAE 331

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+ +G++  +  +NTL+      G  + A  I   M+  +N  P+  T+S+MI      G
Sbjct: 332 MQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMR-GKNISPNVVTYSTMIDGYGKLG 390

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              EA +++++M E+G  P+     +LI  Y K  R DD + A   +  +G+  D     
Sbjct: 391 CFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYN 450

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
            L++   +  K    K   C+       G V  +L     I+   K    +  +++  + 
Sbjct: 451 ALIDAYGKQGKY---KDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEF 507

Query: 397 KKA-------YCNCLIDLCVNLNLLENACKLLE 422
           K+A         + LID C    L+E+A  LL+
Sbjct: 508 KRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQ 540



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 17/261 (6%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           +++ A  ++D  + E    D   F++LI +    G ++    V+ EM+  G++ ++ T+N
Sbjct: 286 DLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFN 345

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+D + +  +     +I   M    +SPN  TY++++  YG+    E+ +S+Y +MKE 
Sbjct: 346 TLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKES 405

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++     YNTL+ + A +G  D+A    +DM+     + D  T++++I     +GK  +
Sbjct: 406 GVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERV-GLKADVVTYNALIDAYGKQGKYKD 464

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------D 332
           A  +F++M   G  PN+   ++LI  Y KA    DV          G+ PD        D
Sbjct: 465 AACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLID 524

Query: 333 RFCGC--------LLNVMTQT 345
             C C        LL  MTQ 
Sbjct: 525 SCCKCGLVEDAVVLLQEMTQA 545



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 108/223 (48%), Gaps = 7/223 (3%)

Query: 115 EKWR---IDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLL-DTMGRA 169
           EKW    +    F  L++  G  G ++  L  YE M + + ++       +++  T+GR 
Sbjct: 154 EKWSHQLVGLEDFPYLLRELGNRGEWERALQGYEWMVQQVHLRSEWSKLASIMISTLGRL 213

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
            +      ++      G   N   Y++++ AYGR+    + L V++ MK+ G + ++  Y
Sbjct: 214 GKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITY 273

Query: 230 NTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           NT++  C   G    +A +IF++M+  E  +PD  TF+S+I +CS  G   +++ +F EM
Sbjct: 274 NTIIDACGKGGVDLKQALDIFDEMQ-KEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEM 332

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              G E ++F   +LI    K  + +     +  +    I+P+
Sbjct: 333 QRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPN 375


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/502 (22%), Positives = 216/502 (43%), Gaps = 74/502 (14%)

Query: 104 MAFGLYDRAR-NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           +A   +D A+  E ++ D   ++T+I + G A NF+ C  + +EM+  G +P ++TYN L
Sbjct: 49  LALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRL 108

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +   GRA    +   I+ +M + G SP+  TY +L+  + +A + ++ + +Y++M++ G 
Sbjct: 109 IHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGF 168

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDM------------------------------ 252
           Q     Y+ ++      G   EA ++FE+M                              
Sbjct: 169 QPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMK 228

Query: 253 ----KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
                      PD  T+S M+ +    G + EAE MFNEM +AG+ P+  +   ++  +G
Sbjct: 229 LYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWG 288

Query: 309 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG----------------- 351
           KA+  +  +    ++ + G+TP+ +    LL    +  + +L                  
Sbjct: 289 KARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQ 348

Query: 352 ----------------KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-- 393
                           ++V  + +S+  +   V  LL  Q    + K      F S+   
Sbjct: 349 THTILLSSCTASAQHHQVVNLMHRSSETVYSFVCTLLLRQLPPQELKHIVQHFFESLHGE 408

Query: 394 -KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLG 451
             D K+ + + LI+   NL     A  + E+G    +Y   ++ ++  Q+S++L  +S+G
Sbjct: 409 EHDCKRGFTDSLIEFLHNLERRPEAGLVWEVGREHNLYPQAVRMKANNQYSINLHVMSMG 468

Query: 452 AALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKG--LASVFESHLKELNAPF 509
            AL AL   +++  + +      P  + I TG GKH        +    ++ L  L +PF
Sbjct: 469 TALVALSRTLSEFREKMLYTGVAPERIEIITGWGKHSRVPGASLVRQAVQNLLTALGSPF 528

Query: 510 HDSPDKVGWFLTTEAAAKSWLE 531
           +     VG F++     ++WL 
Sbjct: 529 YVESSNVGCFVSHGKPLQNWLH 550


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 215/454 (47%), Gaps = 23/454 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG ++ A  L++  +     +D  +++TL+ +Y   G F+  LNV +EM++ G+K + 
Sbjct: 258 AKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDA 317

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL   G+  +  +VK +++EM    + PN  TY++L+  Y +    ++ + V+RE
Sbjct: 318 VTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFRE 377

Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            K+ G++  V LY+ L+ A+C + G  + A    ++M + E  +P+  T++S+I      
Sbjct: 378 FKKAGLKADVVLYSALIDALCKN-GLVESAVSFLDEM-TKEGIRPNVVTYNSIIDAFGRS 435

Query: 276 GKVSEA-EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD-----VVRALNRLPELGIT 329
           G V +A E+   +  +         L +   C+ K +         ++   +++ EL I 
Sbjct: 436 GIVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIK 495

Query: 330 PDDRFCGCLLNVMTQTPK-EELGKLVECVEK-SNSKLGYVVKLLLEEQDIEGDFKKEATE 387
           P+      +LN  ++    E+   L+E +    N   G    LL+   D   +   +A  
Sbjct: 496 PNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYGD---NVWVQAQS 552

Query: 388 LFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLH 444
           LF+ + +       A+ N L D+  +      A  ++  G    V+ ++ S S     L 
Sbjct: 553 LFDEVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGKRRHVWENMWSNS----CLD 608

Query: 445 LKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHL 502
           L  +S GAA   +H W+ ++   +  G E P LL I TG GKH     D  L    E+ L
Sbjct: 609 LHLMSSGAARAMVHAWLLNIRSIVFEGHELPQLLSILTGWGKHSKVVGDGALRRAIEALL 668

Query: 503 KELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 536
             + APF  +   +G F++T A   +WL    +L
Sbjct: 669 TGMGAPFRVAKCNLGRFISTGAVVAAWLRESGTL 702



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 1/202 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           +N++ EM   G++ ++ TYN LLD + +  +      I  EM    + PN  TY++++  
Sbjct: 197 MNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDG 256

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           Y +A   ++ L+++ EMK   + L    YNTLL++ A +G  +EA  + ++M+SS   + 
Sbjct: 257 YAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESS-GIKK 315

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D+ T+++++     +GK  E + +F EM      PNL   ++LI  Y K     + +   
Sbjct: 316 DAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVF 375

Query: 321 NRLPELGITPDDRFCGCLLNVM 342
               + G+  D      L++ +
Sbjct: 376 REFKKAGLKADVVLYSALIDAL 397



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 98/201 (48%), Gaps = 8/201 (3%)

Query: 151 GVKPNMITYNNLLDTMG-------RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           G+KPN++TYN ++D  G       RA   +    ++ EM   G+  +  TY +LL A  +
Sbjct: 165 GLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCK 224

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
               +    +  EM  K +  +V  Y+T++   A  G  DEA  +F +MK + +   D  
Sbjct: 225 GGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFA-SIGLDRV 283

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           +++++++I +  G+  EA  +  EM  +G + +     +L+  YGK  + ++V R    +
Sbjct: 284 SYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEM 343

Query: 324 PELGITPDDRFCGCLLNVMTQ 344
               I P+      L++V ++
Sbjct: 344 KAERIFPNLLTYSTLIDVYSK 364



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 117/251 (46%), Gaps = 14/251 (5%)

Query: 184 DNGLSPNWNTYASLLRAYGRA-----RYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           D+GL PN  TY +++ A G+      R  E  D ++++ EM  +G++  +  YNTLL   
Sbjct: 163 DSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAV 222

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  D AF+I  +M   ++  P+  T+S++I   +  G++ EA  +FNEM  A    +
Sbjct: 223 CKGGQMDLAFQIMSEM-PRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLD 281

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
                +L+  Y K  R ++ +     +   GI  D      LL    +  K EE+ ++ E
Sbjct: 282 RVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFE 341

Query: 356 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC---NCLID-LCVNL 411
            ++        +    L +   +G   +EA E+F    K   KA     + LID LC N 
Sbjct: 342 EMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKN- 400

Query: 412 NLLENACKLLE 422
            L+E+A   L+
Sbjct: 401 GLVESAVSFLD 411


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 1/234 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG  E A  L++  +  KW  D  ++S LI   G AG ++  L V  EM+A G KPN+
Sbjct: 20  AKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNL 79

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN L+D +G+A +  +   +  EM DNG  P+  TY  L+   G+A    +  +++ E
Sbjct: 80  WTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAE 139

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+E+G       YN+L+     VG + +A E+ E+M+    C PD  T+SS+IT     G
Sbjct: 140 MRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEME-RHGCPPDVMTYSSLITGLGKDG 198

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +  +A  +F EM   G +P+    T+L+   GKA R DD +  L+ + E G+ P
Sbjct: 199 ETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKP 252



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +  AF L+   R      D   +++LI   G  G     + + EEM+  G  P+++
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+  +G+     +   +++EM   G  P+  T+ +L+ A G+A   +D L +  EM
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G++  V  YN L+A    VG   EA+ + ++MK +  C+PD  T+S +IT      +
Sbjct: 246 KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRN-GCKPDVVTYSCLITGLIKASQ 304

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + EA  +  +M + G  P+     +LI   GKA   +D  R  +R+   G  PD
Sbjct: 305 LDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPD 358



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 24/314 (7%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G + K++        R  K    ++        +AG V+ A  L D  +    +   
Sbjct: 195 GKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGV 254

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
             ++ LI  +G  G+     N+ +EMK  G KP+++TY+ L+  + +A +  +   + K+
Sbjct: 255 VTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKK 314

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G  P+  TY +L+   G+A    D   ++  MK KG    V  Y+TL+        
Sbjct: 315 MEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAAR 374

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            + A  +FE+M+S    QPD +T+ S+IT+    G+V +A+ +F+EM   G  P++    
Sbjct: 375 VESACVLFEEMESV-GIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYN 433

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD-----------------DRFCGCLLNVMTQ 344
           + +   G+  R  +  +    + E G+ PD                 D  CG L  ++ Q
Sbjct: 434 AFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQ 493

Query: 345 TPKEELGKLVECVE 358
               +  K  EC+E
Sbjct: 494 GCAFDSLKFDECLE 507



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 120/231 (51%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  VE A  L++   +   + D   + ++I + G AG  D    ++ EM+  G+ P++I
Sbjct: 371 KAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVI 430

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN  L+++GR  R  + + I+++M ++GL P+  TY +LL    + +  +D   + +E+
Sbjct: 431 TYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKEL 490

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E+G       ++  L +    G  DEA E+ +   +S+   P + +++++I   +  G+
Sbjct: 491 IEQGCAFDSLKFDECLEILTSWGNVDEAHELLQ-FANSKGLWPGASSYNALIDALAKAGR 549

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           VSEA     ++ E G +P++   +SLI   G+  + D     L  + + G+
Sbjct: 550 VSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGL 600



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 1/178 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN++TYN+LL+ + +A +  + + +++E+     +P+  +Y+ L+ + GRA   E  L V
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             EM+ KG + ++  YNTL+      G  DEA  +  +M+ +  C PD  T++ +I+   
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDN-GCVPDVRTYNCLISTLG 125

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G++SEA  +F EM E G  P+ F   SLI   GK  R+   +  L  +   G  PD
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPD 183



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 134/303 (44%), Gaps = 37/303 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  ++ A  +  +   E    D   ++TLI   G AG  +    +++ MK+ G  P+++
Sbjct: 301 KASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVV 360

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+  +G+A R      +++EM   G+ P+  TY S++   G+A   +D   ++ EM
Sbjct: 361 TYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEM 420

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + KG+   V  YN  L      G   EA +IFEDMK S    PD  T+ +++   S   +
Sbjct: 421 RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKES-GLLPDVATYDALLLGLSKTKE 479

Query: 278 VSEAEAMFNEMLEAG-------FEPNLFVLTS---------------------------- 302
           V +A  +  E++E G       F+  L +LTS                            
Sbjct: 480 VDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNA 539

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSN 361
           LI    KA R  +    L  L E G  PD      L++ + QT + +   +L+E + K  
Sbjct: 540 LIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRG 599

Query: 362 SKL 364
            KL
Sbjct: 600 LKL 602



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 67/144 (46%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++   V+ A GL      +    D   F   +++  + GN D    + +   + G+ P  
Sbjct: 475 SKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGA 534

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN L+D + +A R  +     +++ + G  P+  +Y+SL+ A G+    +    +  E
Sbjct: 535 SSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEE 594

Query: 217 MKEKGMQLSVTLYNTLLAMCADVG 240
           M ++G++LS   Y+ L+    D G
Sbjct: 595 MSKRGLKLSPRSYSNLVRKLQDWG 618


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 218/493 (44%), Gaps = 66/493 (13%)

Query: 98  RAGNVEMAFG-LYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           + GN+E+A   L D    E   + PN   +STLI  Y     +D  L +YE+MK++G++ 
Sbjct: 351 KCGNIELAMQVLLDM---EAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQL 407

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + + YN +L    +A +  ++  +  EM D+G+  +  TY SL+  YG+    +    + 
Sbjct: 408 DRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLV 467

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           ++M+ +G+  SV  Y+TL+ + +  G   +AF ++ D K S   +PD   FSS I   + 
Sbjct: 468 QDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKES-GLKPDVVLFSSFIDTLAK 526

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD-----------------VV 317
            G V  A ++ N+M E G +PN+    ++I  +GK++   +                 ++
Sbjct: 527 NGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVYNGQII 586

Query: 318 RALN---------------------------RLPELGITPDDRFCGCLLNVMTQTPK-EE 349
           RA N                           ++ + G+ P+      +LN  ++    E+
Sbjct: 587 RAANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFED 646

Query: 350 LGKLVECVEK-SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLI 405
              L+E +    N   G    LL+  Q+I      +A  LFN + +       A+ N L 
Sbjct: 647 AALLLEQLRLFDNFVYGVAYGLLMGYQEIW----SQAQSLFNQLGRMDSPTSSAFYNALT 702

Query: 406 DLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLS 465
           D+  +    + A  ++  G+   V+ +  S    ++ L L  +S GAA   +H W+ ++ 
Sbjct: 703 DVLWHFGQRQGAQLVVLEGVNRRVWDNTWS----EFCLDLHLMSCGAAQAMVHAWLLNVR 758

Query: 466 KALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTE 523
             +  G   P  L I TG GKH        L  V E+ L  + APF      +G F++  
Sbjct: 759 SIVFEGRAMPEFLSILTGWGKHSKIAGASTLRHVIEALLNSIGAPFQVERFNIGRFVSPS 818

Query: 524 AAAKSWLESRSSL 536
           A   +WL    ++
Sbjct: 819 AVVAAWLRESGTM 831



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 120/236 (50%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG++E A  L+D   +     D   ++T I      GN +  + V  +M+A  VKPN+
Sbjct: 315 SRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNV 374

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGEDTLSVYR 215
           +TY+ L+D   + ++  +   +Y++M   G+  +   Y ++L  Y +A +YGE  + V  
Sbjct: 375 VTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAI-VCD 433

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM++ G++     YN+L+      G  D    + +DM+      P   T+S++I I S  
Sbjct: 434 EMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRR-RGVAPSVLTYSTLIDIYSKA 492

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G   +A  ++ +  E+G +P++ + +S I    K    +  +  LN + E+GI P+
Sbjct: 493 GMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPN 548



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 100 GNVEMAF--GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G V++ F  G + +   ++   D   F++L+     AG+ +    +++EM  +G+  ++ 
Sbjct: 281 GGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIY 340

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN  +D + +         +  +M    + PN  TY++L+  Y +    ++ L +Y +M
Sbjct: 341 TYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKM 400

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+QL    YNT+LA+    G   E   + ++M+ S   + D+ T++S+I     +G+
Sbjct: 401 KSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDS-GIEKDTVTYNSLINGYGKQGR 459

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +     +  +M   G  P++   ++LI  Y KA    D         E G+ PD
Sbjct: 460 LDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPD 513



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 40/210 (19%)

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  +G+  RP   +  +      G        ++L+ AY R+    + + V   MK  G+
Sbjct: 205 IGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGL 264

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEI--FEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           + +   YN ++  C   G  D  F +  F  M     C PD  TF+S+++ CS  G + +
Sbjct: 265 RPTTVTYNAVIDACGK-GGVDLRFTLGYFRQMLRDRLC-PDRKTFNSLLSACSRAGHLED 322

Query: 281 AEAMFNEMLEAGF-----------------------------------EPNLFVLTSLIQ 305
           A A+F+EM+  G                                    +PN+   ++LI 
Sbjct: 323 ARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLID 382

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            Y K ++ D+ ++   ++  LGI   DR C
Sbjct: 383 GYSKLEKYDEALKLYEKMKSLGIQL-DRVC 411



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 97/207 (46%), Gaps = 25/207 (12%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG    AF +Y   +    + D   FS+ I      G  +  L++  +M  +G+KPN+
Sbjct: 490 SKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNV 549

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG---RARYGEDT--- 210
           +TYN ++D  G++K   +      EM   G+   +N    ++RA     R R   D    
Sbjct: 550 VTYNTIIDAFGKSKVLSEEDPEAGEM---GIVGVYN--GQIIRAANPVTRGRSAIDVRMR 604

Query: 211 --------LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
                   L ++++M ++G++ +V  ++ +L  C+     ++A  + E ++  +N     
Sbjct: 605 RSQELYFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFEDAALLLEQLRLFDN----- 659

Query: 263 WTFSSMITICSCRGKV-SEAEAMFNEM 288
           + +     +     ++ S+A+++FN++
Sbjct: 660 FVYGVAYGLLMGYQEIWSQAQSLFNQL 686


>gi|293333330|ref|NP_001168430.1| uncharacterized protein LOC100382200 [Zea mays]
 gi|223948245|gb|ACN28206.1| unknown [Zea mays]
          Length = 830

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 101/157 (64%), Gaps = 4/157 (2%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           NF+  LN+++EMKA GVKPN++  N +L  MG A +PW VK+I++EM D  +  +  TY 
Sbjct: 619 NFNRALNLFKEMKATGVKPNLVMCNTMLYVMGHALQPWVVKSIHREMIDKQVQHSKVTYC 678

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
            LL AY RA Y ED ++VYR MK++ M   V LYN LL+   D+ Y DEA EIF DMK+S
Sbjct: 679 CLLHAYTRAHYDEDAMAVYRLMKDEAMD--VMLYNMLLSRYVDIDYVDEAEEIFGDMKAS 736

Query: 256 --ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
             +  +PD W++SSM+   S    +   E + NEM+E
Sbjct: 737 MDDRSKPDKWSYSSMLRQYSSTANILGVEGILNEMVE 773


>gi|224029839|gb|ACN33995.1| unknown [Zea mays]
          Length = 411

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 101/157 (64%), Gaps = 4/157 (2%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           NF+  LN+++EMKA GVKPN++  N +L  MG A +PW VK+I++EM D  +  +  TY 
Sbjct: 200 NFNRALNLFKEMKATGVKPNLVMCNTMLYVMGHALQPWVVKSIHREMIDKQVQHSKVTYC 259

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
            LL AY RA Y ED ++VYR MK++ M   V LYN LL+   D+ Y DEA EIF DMK+S
Sbjct: 260 CLLHAYTRAHYDEDAMAVYRLMKDEAMD--VMLYNMLLSRYVDIDYVDEAEEIFGDMKAS 317

Query: 256 --ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
             +  +PD W++SSM+   S    +   E + NEM+E
Sbjct: 318 MDDRSKPDKWSYSSMLRQYSSTANILGVEGILNEMVE 354


>gi|414887493|tpg|DAA63507.1| TPA: hypothetical protein ZEAMMB73_333728 [Zea mays]
          Length = 674

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 101/157 (64%), Gaps = 4/157 (2%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           NF+  LN+++EMKA GVKPN++  N +L  MG A +PW VK+I++EM D  +  +  TY 
Sbjct: 463 NFNRALNLFKEMKATGVKPNLVMCNTMLYVMGHALQPWVVKSIHREMIDKQVQHSKVTYC 522

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
            LL AY RA Y ED ++VYR MK++ M   V LYN LL+   D+ Y DEA EIF DMK+S
Sbjct: 523 CLLHAYTRAHYDEDAMAVYRLMKDEAMD--VMLYNMLLSRYVDIDYVDEAEEIFGDMKAS 580

Query: 256 --ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
             +  +PD W++SSM+   S    +   E + NEM+E
Sbjct: 581 MDDRSKPDKWSYSSMLRQYSSTANILGVEGILNEMVE 617


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 225/484 (46%), Gaps = 60/484 (12%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG ++ A  L++  +     +D  +++TL+ +Y   G F+  LNV +EM++ G+K + 
Sbjct: 372 AKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDA 431

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL   G+  +  +VK +++EM    + PN  TY++L+  Y +    ++ + V+RE
Sbjct: 432 VTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFRE 491

Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            K+ G++  V LY+ L+ A+C + G  + A    ++M + E  +P+  T++S+I      
Sbjct: 492 FKKAGLKADVVLYSALIDALCKN-GLVESAVSFLDEM-TKEGIRPNVVTYNSII---DAF 546

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTS---------------------LIQCYGK--AQR 312
           G+   AE     +++  +E N+  ++S                     +I+ +G+  A++
Sbjct: 547 GRSGSAEC----VIDPPYETNVSKMSSSSLKVVEDATESEVGDKEDNQIIKIFGQLAAEK 602

Query: 313 TDD-------------VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358
           T               ++   +++ EL I P+      +LN  ++    E+   L+E + 
Sbjct: 603 TCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELR 662

Query: 359 K-SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLL 414
              N   G    LL+   D   +   +A  LF+ + +       A+ N L D+  +    
Sbjct: 663 LFDNQVYGVAHGLLMGYGD---NVWVQAQSLFDEVKQMDSSTASAFYNALTDMLWHFGQR 719

Query: 415 ENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 474
             A  ++  G    V+ ++ S S     L L  +S GAA   +H W+ ++   +  G E 
Sbjct: 720 RGAQLVVLEGKRRHVWENMWSNS----CLDLHLMSSGAARAMVHAWLLNIRSIVFEGHEL 775

Query: 475 PPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLES 532
           P LL I TG GKH     D  L    E+ L  + APF  +   +G F++T A   +WL  
Sbjct: 776 PQLLSILTGWGKHSKVVGDGALRRAIEALLTGMGAPFRVAKCNLGRFISTGAVVAAWLRE 835

Query: 533 RSSL 536
             +L
Sbjct: 836 SGTL 839



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 163/331 (49%), Gaps = 8/331 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE+A  +++ A NE +     AFS LI  YG +G  D  + V+E MK+ G+KPN++
Sbjct: 197 RLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLV 256

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D  G+    + +   I+ EM  NG+ P+  T+ SLL   GR    E   +++ E
Sbjct: 257 TYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSE 316

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G++  +  YNTLL      G  D AF+I  +M   ++  P+  T+S++I   +  G
Sbjct: 317 MLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEM-PRKHIMPNVVTYSTVIDGYAKAG 375

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ EA  +FNEM  A    +     +L+  Y K  R ++ +     +   GI  D     
Sbjct: 376 RLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYN 435

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            LL    +  K EE+ ++ E ++        +    L +   +G   +EA E+F    K 
Sbjct: 436 ALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKA 495

Query: 396 VKKA---YCNCLID-LCVNLNLLENACKLLE 422
             KA     + LID LC N  L+E+A   L+
Sbjct: 496 GLKADVVLYSALIDALCKN-GLVESAVSFLD 525



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G +++AF +       +  I PN   +ST+I  Y  AG  D  LN++ EMK   +  +
Sbjct: 338 KGGQMDLAFQIMSEM--PRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLD 395

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            ++YN LL    +  R  +   + KEM  +G+  +  TY +LL  YG+    E+   V+ 
Sbjct: 396 RVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFE 455

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK + +  ++  Y+TL+ + +  G   EA E+F + K +   + D   +S++I      
Sbjct: 456 EMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKA-GLKADVVLYSALIDALCKN 514

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           G V  A +  +EM + G  PN+    S+I  +G++   + V+
Sbjct: 515 GLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVI 556



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  E A  L+          D   ++TL+      G  D    +  EM    + PN++
Sbjct: 303 RGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVV 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ ++D   +A R  +   ++ EM    +  +  +Y +LL  Y +    E+ L+V +EM
Sbjct: 363 TYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEM 422

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G++     YN LL      G  +E   +FE+MK +E   P+  T+S++I + S  G 
Sbjct: 423 ESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK-AERIFPNLLTYSTLIDVYSKGGL 481

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EA  +F E  +AG + ++ + ++LI    K    +  V  L+ + + GI P+
Sbjct: 482 YQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPN 535



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 88/171 (51%), Gaps = 2/171 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++  +GR  +    K +++   + G       +++L+ AYGR+ Y ++ + V+  MK  G
Sbjct: 191 MISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSG 250

Query: 222 MQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           ++ ++  YN ++  C   G   + A EIF++M  +   QPD  TF+S++ +C   G    
Sbjct: 251 LKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRN-GVQPDRITFNSLLAVCGRGGLWEA 309

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A  +F+EML  G E ++F   +L+    K  + D   + ++ +P   I P+
Sbjct: 310 ARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPN 360



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MITICSCRGKVSEAEAMFNE 287
           Y  LL    + G   +A   FE     E  + +    +S MI+I    G+V  A+ +F  
Sbjct: 151 YTFLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAMISILGRLGQVELAKNVFET 210

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            L  G+   ++  ++LI  YG++   D+ ++    +   G+ P+
Sbjct: 211 ALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPN 254


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 124/504 (24%), Positives = 220/504 (43%), Gaps = 75/504 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G +++AF +   A+    RI PN  ++ST+I  +  AG FD  LN++ EM+ +G+  +
Sbjct: 386 KGGQMDLAFEIL--AQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALD 443

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            ++YN LL    +  R  +   I +EM   G+  +  TY +LL  YG+    ++   V+ 
Sbjct: 444 RVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFT 503

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK + +  ++  Y+TL+   +  G   EA EIF + KS+   + D   +S++I      
Sbjct: 504 EMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA-GLRADVVLYSALIDALCKN 562

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV------------------ 317
           G V  A ++ +EM + G  PN+    S+I  +G++   D                     
Sbjct: 563 GLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSAL 622

Query: 318 ------RALNRLPELGITPDDRFC----------GCLLNVMTQTPK-------------- 347
                 R +    +L    ++R             C+L V  +  +              
Sbjct: 623 TETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAIL 682

Query: 348 ---------EELGKLVECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELF---NSISK 394
                    E+   L+E +   ++K+ G V  LL+ +++   +   +A  LF   N +  
Sbjct: 683 NACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQRE---NVWLQAQSLFDKVNEMDG 739

Query: 395 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454
               A+ N L D+  +      A  +   G + +V+ ++ S S     L L  +S GAA 
Sbjct: 740 STASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWENVWSDS----CLDLHLMSSGAAR 795

Query: 455 TALHIWINDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDS 512
             +H W+ ++   +  G E P +L I TG GKH     D  L    E  L+ ++APFH S
Sbjct: 796 AMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLS 855

Query: 513 PDKVGWFLTTEAAAKSWLESRSSL 536
              +G F ++ +   +WL   ++L
Sbjct: 856 KCNMGRFTSSGSVVATWLRESATL 879



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 156/331 (47%), Gaps = 8/331 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V +A  +++ A    +     AFS LI  YG +G  +  ++V+  MK  G++PN++
Sbjct: 245 RYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLV 304

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D  G+    + QV   + EM  NG+ P+  T+ SLL    R    E   +++ E
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  + ++  V  YNTLL      G  D AFEI   M   +   P+  ++S++I   +  G
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP-VKRIMPNVVSYSTVIDGFAKAG 423

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  EA  +F EM   G   +     +L+  Y K  R+++ +  L  +  +GI  D     
Sbjct: 424 RFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYN 483

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            LL    +  K +E+ K+   +++ +     +    L +   +G   KEA E+F      
Sbjct: 484 ALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543

Query: 396 VKKA---YCNCLID-LCVNLNLLENACKLLE 422
             +A     + LID LC N  L+ +A  L++
Sbjct: 544 GLRADVVLYSALIDALCKN-GLVGSAVSLID 573



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  E A  L+D   N +   D  +++TL+      G  D    +  +M    + PN+
Sbjct: 350 SRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNV 409

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++Y+ ++D   +A R  +   ++ EM   G++ +  +Y +LL  Y +    E+ L + RE
Sbjct: 410 VSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILRE 469

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G++  V  YN LL      G  DE  ++F +MK  E+  P+  T+S++I   S  G
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK-REHVLPNLLTYSTLIDGYSKGG 528

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              EA  +F E   AG   ++ + ++LI    K       V  ++ + + GI+P+
Sbjct: 529 LYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPN 583



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 81/170 (47%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++ T+GR  +    K I++     G       +++L+ AYGR+   E+ +SV+  MKE G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ ++  YN ++  C   G   +    F D       QPD  TF+S++ +CS  G    A
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAA 358

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +F+EM     E ++F   +L+    K  + D     L ++P   I P+
Sbjct: 359 RNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPN 408



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 117/252 (46%), Gaps = 12/252 (4%)

Query: 105 AFGLYD------RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A G Y+      R +NE+ ++     STL    G  G       ++E   A G    +  
Sbjct: 215 AVGFYEFAVKRERRKNEQGKLASAMISTL----GRYGKVTIAKRIFETAFAGGYGNTVYA 270

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREM 217
           ++ L+   GR+    +  +++  M + GL PN  TY +++ A G+     +     + EM
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G+Q     +N+LLA+C+  G  + A  +F++M ++   + D +++++++      G+
Sbjct: 331 QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEM-TNRRIEQDVFSYNTLLDAICKGGQ 389

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  +  +M      PN+   +++I  + KA R D+ +     +  LGI  D      
Sbjct: 390 MDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNT 449

Query: 338 LLNVMTQTPKEE 349
           LL++ T+  + E
Sbjct: 450 LLSIYTKVGRSE 461


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 220/470 (46%), Gaps = 42/470 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  + A  L+   R     +D  +++TL+ +Y   G  +  L++  EM ++G+K +++
Sbjct: 421 KAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVV 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL   G+  +  +VK ++ EM    + PN  TY++L+  Y +    ++ + V+RE 
Sbjct: 481 TYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREF 540

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC---- 272
           K  G++  V LY+ L+ A+C + G    A  + ++M + E   P+  T++S+I       
Sbjct: 541 KSAGLRADVVLYSALIDALCKN-GLVGSAVSLIDEM-TKEGISPNVVTYNSIIDAFGRSA 598

Query: 273 --------SCRGKVSEAEAMFNEMLEAGFEPNLFV-LTSLIQCYGKAQRTDD-------- 315
                   S  G +  + +  +E+ E   E N  + L   +   G  + T D        
Sbjct: 599 TMERSADYSNGGSLPFSSSALSELTET--EGNRVIQLFGQLTSEGNNRMTKDCKEGMQEL 656

Query: 316 --VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL-GYVVKLL 371
             ++    ++ +L I P+      +LN  ++    E+   L+E +   ++K+ G V  LL
Sbjct: 657 SCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLL 716

Query: 372 LEEQDIEGDFKKEATELF---NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428
           + +++   +   +A  LF   N +      A+ N L D+  +      A  +   G + +
Sbjct: 717 MGQRE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQ 773

Query: 429 VYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHK 488
           V+ ++ S S     L L  +S GAA   +H W+ ++   +  G E P +L I TG GKH 
Sbjct: 774 VWENVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHS 829

Query: 489 --YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 536
               D  L    E  L+ ++APFH S   +G F ++ +   +WL   ++L
Sbjct: 830 KVVGDGALKRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATL 879



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 156/331 (47%), Gaps = 8/331 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V +A  +++ A +  +     AFS LI  YG +G  +  ++V+  MK  G++PN++
Sbjct: 245 RYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLV 304

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D  G+    + QV   + EM  N + P+  T+ SLL    R    E   +++ E
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  + ++  V  YNTLL      G  D AFEI   M  ++   P+  ++S++I   +  G
Sbjct: 365 MSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP-AKRIMPNVVSYSTVIDGFAKAG 423

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  EA  +F EM       +     +L+  Y K  R+++ +  L  +  +GI  D     
Sbjct: 424 RFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYN 483

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            LL    +  K +E+ K+   +++ +     +    L +   +G   KEA E+F      
Sbjct: 484 ALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSA 543

Query: 396 VKKAYC---NCLID-LCVNLNLLENACKLLE 422
             +A     + LID LC N  L+ +A  L++
Sbjct: 544 GLRADVVLYSALIDALCKN-GLVGSAVSLID 573



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 151/327 (46%), Gaps = 14/327 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  E A  L+D   N +   D  +++TL+      G  D    +  +M A  + PN+
Sbjct: 350 SRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNV 409

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++Y+ ++D   +A R  +   ++ EM    ++ +  +Y +LL  Y +    E+ L + RE
Sbjct: 410 VSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILRE 469

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G++  V  YN LL      G  DE  ++F +MK  E+  P+  T+S++I   S  G
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMK-REHVLPNLLTYSTLIDGYSKGG 528

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              EA  +F E   AG   ++ + ++LI    K       V  ++ + + GI+P+     
Sbjct: 529 LYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYN 588

Query: 337 CLLNVMTQTPKEELGKLVECVEKSN-SKLGYVVKLLLEEQDIEGD-----FKKEATELFN 390
            +++   ++   E        + SN   L +    L E  + EG+     F +  +E  N
Sbjct: 589 SIIDAFGRSATME-----RSADYSNGGSLPFSSSALSELTETEGNRVIQLFGQLTSEGNN 643

Query: 391 SISKDVKKAY--CNCLIDLCVNLNLLE 415
            ++KD K+     +C++++   ++ LE
Sbjct: 644 RMTKDCKEGMQELSCILEVFRKMHQLE 670



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 4/172 (2%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++ T+GR  +    K I++     G       +++L+ AYGR+   E+ +SV+  MKE G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298

Query: 222 MQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVS 279
           ++ ++  YN ++  C   G    +  + F++M+   NC QPD  TF+S++ +CS  G   
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQ--RNCVQPDRITFNSLLAVCSRGGLWE 356

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            A  +F+EM     E ++F   +L+    K  + D     L ++P   I P+
Sbjct: 357 AARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPN 408



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 117/257 (45%), Gaps = 12/257 (4%)

Query: 100 GNVEMAFGLYD------RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           G  + A G Y+      R +NE+ ++     STL    G  G       ++E   + G  
Sbjct: 210 GECDKAVGFYEFAVKRERRKNEQGKLASAMISTL----GRYGKVTIAKRIFETAFSGGYG 265

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLS 212
             +  ++ L+   GR+    +  +++  M + GL PN  TY +++ A G+     +    
Sbjct: 266 NTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAK 325

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
            + EM+   +Q     +N+LLA+C+  G  + A  +F++M S+   + D +++++++   
Sbjct: 326 FFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEM-SNRRIEQDVFSYNTLLDAI 384

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              G++  A  +  +M      PN+   +++I  + KA R D+ +     +  L I  D 
Sbjct: 385 CKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDR 444

Query: 333 RFCGCLLNVMTQTPKEE 349
                LL++ T+  + E
Sbjct: 445 VSYNTLLSIYTKVGRSE 461


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 203/443 (45%), Gaps = 42/443 (9%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L    R    R D   ++TLI       N D  + V+EEM A   +P++ TYN ++
Sbjct: 49  VALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMV 108

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR  +  + + ++KE+ + G  P+  TY SLL A+ +    E    V  E+ + G +
Sbjct: 109 SVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFR 168

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M   +G  D A  ++++M++   C PD+ T++ ++       ++SEA  
Sbjct: 169 KDGITYNTMIHMYGKMGRLDLALGLYDEMRAI-GCTPDAVTYTVLVDSLGKMDRISEAGK 227

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           +  EM +AG +P L   ++LI  Y K+ R DD  R  +R+ E G+ PD      +L+V  
Sbjct: 228 VLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFA 287

Query: 344 QTPKEELGKLVECVEKSNSKLGY-----VVKLLL-------EEQDIEGDFKK-EATELFN 390
           ++  +E  KL+  + ++  K GY     + ++LL       E  +IEG  +  EA    N
Sbjct: 288 RS--DETRKLM-VLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMN 344

Query: 391 S--ISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL 448
              IS  + KA C     +    +LL+ AC              +Q   P       + L
Sbjct: 345 PLVISSILIKAEC-----ISQGASLLKRAC--------------LQGYEPDDGP--DRQL 383

Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAP 508
           +   +L  +    + +  +L+   E P  + + TG G  +Y+   L     ++L E+ +P
Sbjct: 384 ASNMSLGVISKSQSAIDASLQGAPESPKSIVLVTGEG--EYNMVSLRKTIRAYLLEMGSP 441

Query: 509 FHDSPDKVGWFLTTEAAAKSWLE 531
           F     + G F+    + K WL+
Sbjct: 442 FLPCRSRSGRFVVKAYSLKMWLK 464



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 11/272 (4%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           HG+ G + ++ +       +  +    +Y++      + G+VE    + +      +R D
Sbjct: 111 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 170

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              ++T+I +YG  G  D  L +Y+EM+AIG  P+ +TY  L+D++G+  R  +   + +
Sbjct: 171 GITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLE 230

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM D GL P   T+++L+ AY ++   +D    +  M E G++     Y  +L + A   
Sbjct: 231 EMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD 290

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            T +   ++  M   +  +PD   +  ++   +   +  E E +  +M EA FE N  V+
Sbjct: 291 ETRKLMVLYRAM-IKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDM-EAVFEMNPLVI 348

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +S++    KA+        L R    G  PDD
Sbjct: 349 SSILI---KAECISQGASLLKRACLQGYEPDD 377


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 223/478 (46%), Gaps = 49/478 (10%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG +E A  LY+  +     +D  +++TL+ +Y   G F+  L V +EM + GVK ++
Sbjct: 374 AKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDV 433

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LLD  G+  +  +V  ++KEM  + + PN  TY++L+  Y +    E+ + V+RE
Sbjct: 434 VTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFRE 493

Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            K+ G++  V LY+ L+ A+C + G  D A  + ++M + E  +P+  T++S+I      
Sbjct: 494 FKQAGLKADVVLYSELINALCKN-GLVDSAVLLLDEM-TKEGIRPNVVTYNSII---DAF 548

Query: 276 GKVSEAEAMF------NE--------MLEAGFEP--------NLF----VLTSLIQCYGK 309
           G+ + AE +       NE        ML  G +         ++F     L S  +   K
Sbjct: 549 GRSTTAEFLVDGVGASNERQSESPSFMLIEGVDESEINWDDGHVFKFYQQLVSEKEGPAK 608

Query: 310 AQR-----TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
            +R        ++    ++ EL I P+      +LN  ++    E+   L+E +   +++
Sbjct: 609 KERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLLEELRLFDNQ 668

Query: 364 LGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKL 420
           +  V   LL       +   +A  LF+ + +       A+ N L D+  +      A  +
Sbjct: 669 VYGVAHGLL--MGFSENVWIQAQYLFDEVKQMDSSTASAFYNALTDMLWHFGQKRGAQLV 726

Query: 421 LELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGI 480
           +  G   +V+  + S S     L L  +S GAA   +H W+  +   +  G + P LL I
Sbjct: 727 VLEGKRRKVWETLWSDS----CLDLHLMSSGAARAMVHAWLLGIHSVVFEGHQLPKLLSI 782

Query: 481 NTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 536
            TG GKH     D  L    E+ L  + APF  +   +G +++T +   +WL+   +L
Sbjct: 783 LTGWGKHSKVVGDGALRRAIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTL 840



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 164/331 (49%), Gaps = 8/331 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE+A G+++ A +E +     AFS LI  YG +G FD  + V+E MK  G+KPN++
Sbjct: 199 RLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLV 258

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D  G+    + +V  I++EM  NG+ P+  TY SLL    R    E   +++ E
Sbjct: 259 TYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNE 318

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M ++G+   V  YNTLL      G  D A+EI  +M   +   P+  T+S+M    +  G
Sbjct: 319 MIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM-PGKKILPNVVTYSTMADGYAKAG 377

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ +A  ++NEM   G   +     +L+  Y K  R +D ++    +   G+  D     
Sbjct: 378 RLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYN 437

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            LL+   +  K  E+ ++ + ++K       +    L +   +G   +EA E+F    + 
Sbjct: 438 ALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQA 497

Query: 396 VKKA----YCNCLIDLCVNLNLLENACKLLE 422
             KA    Y   +  LC N  L+++A  LL+
Sbjct: 498 GLKADVVLYSELINALCKN-GLVDSAVLLLD 527



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G +++A+ +      +K  I PN   +ST+   Y  AG  +  LN+Y EMK +G+  +
Sbjct: 340 KGGQMDLAYEIMLEMPGKK--ILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLD 397

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            ++YN LL    +  R      + KEM  +G+  +  TY +LL  YG+     +   V++
Sbjct: 398 RVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFK 457

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK+  +  ++  Y+TL+ + +     +EA E+F + K +   + D   +S +I      
Sbjct: 458 EMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQA-GLKADVVLYSELINALCKN 516

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           G V  A  + +EM + G  PN+    S+I  +G++   + +V
Sbjct: 517 GLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLV 558



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 121/267 (45%), Gaps = 3/267 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  E A  L++   +     D   ++TL+      G  D    +  EM    + PN+
Sbjct: 304 SRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNV 363

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY+ + D   +A R      +Y EM   G+  +  +Y +LL  Y +    ED L V +E
Sbjct: 364 VTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKE 423

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G++  V  YN LL      G  +E   +F++MK  +   P+  T+S++I + S   
Sbjct: 424 MGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK-KDRVFPNLLTYSTLIDVYSKGS 482

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              EA  +F E  +AG + ++ + + LI    K    D  V  L+ + + GI P+     
Sbjct: 483 LYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYN 542

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSK 363
            +++   ++   E   LV+ V  SN +
Sbjct: 543 SIIDAFGRSTTAEF--LVDGVGASNER 567



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 130/304 (42%), Gaps = 49/304 (16%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++ T+GR  +    K +++     G       +++L+ AYG++ Y ++ + V+  MK  G
Sbjct: 193 MISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSG 252

Query: 222 MQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           ++ ++  YN ++  C   G       EIFE+M  +   QPD  T++S++ +CS  G    
Sbjct: 253 LKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRN-GVQPDRITYNSLLAVCSRGGLWEA 311

Query: 281 AEAMFNEMLEAGFE-----------------------------------PNLFVLTSLIQ 305
           A  +FNEM++ G +                                   PN+   +++  
Sbjct: 312 ARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMAD 371

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 365
            Y KA R +D +   N +  LGI  D      LL++  +  + E   L  C E  +S + 
Sbjct: 372 GYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFE-DALKVCKEMGSSGVK 430

Query: 366 YVV---KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCN-----CLIDLCVNLNLLENA 417
             V     LL+    +G F  E T +F  + KD  + + N      LID+    +L E A
Sbjct: 431 KDVVTYNALLDGYGKQGKF-NEVTRVFKEMKKD--RVFPNLLTYSTLIDVYSKGSLYEEA 487

Query: 418 CKLL 421
            ++ 
Sbjct: 488 MEVF 491



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           S+MI+     GKV  A+ +F   L  G+   +F  ++LI  YGK+   D+ ++    +  
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 326 LGITPD 331
            G+ P+
Sbjct: 251 SGLKPN 256


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 223/477 (46%), Gaps = 49/477 (10%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  LY+  +     +D  +++TL+ +Y   G F+  L V +EM + GVK +++
Sbjct: 375 KAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVV 434

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LLD  G+  +  +V  ++KEM  + + PN  TY++L+  Y +    E+ + V+RE 
Sbjct: 435 TYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREF 494

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           K+ G++  V LY+ L+ A+C + G  D A  + ++M + E  +P+  T++S+I      G
Sbjct: 495 KQAGLKADVVLYSELINALCKN-GLVDSAVLLLDEM-TKEGIRPNVVTYNSII---DAFG 549

Query: 277 KVSEAEAMF------NE--------MLEAGFEP--------NLF----VLTSLIQCYGKA 310
           + + AE +       NE        ML  G +         ++F     L S  +   K 
Sbjct: 550 RSTTAEFLVDGVGASNERQSESPTFMLIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKK 609

Query: 311 QR-----TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 364
           +R        ++    ++ EL I P+      +LN  ++    E+   L+E +   ++++
Sbjct: 610 ERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLLEELRLFDNQV 669

Query: 365 GYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLL 421
             V   LL       +   +A  LF+ + +       A+ N L D+  +      A  ++
Sbjct: 670 YGVAHGLL--MGFSENVWIQAQYLFDEVKQMDSSTASAFYNALTDMLWHFGQKRGAQLVV 727

Query: 422 ELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGIN 481
             G   +V+  + S S     L L  +S GAA   +H W+  +   +  G + P LL I 
Sbjct: 728 LEGKRRKVWETLWSDS----CLDLHLMSSGAARAMVHAWLLGIHSVVFEGHQLPKLLSIL 783

Query: 482 TGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 536
           TG GKH     D  L    E+ L  + APF  +   +G +++T +   +WL+   +L
Sbjct: 784 TGWGKHSKVVGDGALRRAIEALLTSMGAPFRVAKCNIGRYVSTGSVVAAWLKESGTL 840



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 164/331 (49%), Gaps = 8/331 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE+A G+++ A +E +     AFS LI  YG +G FD  + V+E MK  G+KPN++
Sbjct: 199 RLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLV 258

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D  G+    + +V  I++EM  NG+ P+  TY SLL    R    E   +++ E
Sbjct: 259 TYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNE 318

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M ++G+   V  YNTLL      G  D A+EI  +M   +   P+  T+S+M    +  G
Sbjct: 319 MIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM-PGKKILPNVVTYSTMADGYAKAG 377

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ +A  ++NEM   G   +     +L+  Y K  R +D ++    +   G+  D     
Sbjct: 378 RLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYN 437

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            LL+   +  K  E+ ++ + ++K       +    L +   +G   +EA E+F    + 
Sbjct: 438 ALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQA 497

Query: 396 VKKA----YCNCLIDLCVNLNLLENACKLLE 422
             KA    Y   +  LC N  L+++A  LL+
Sbjct: 498 GLKADVVLYSELINALCKN-GLVDSAVLLLD 527



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G +++A+ +      +K  I PN   +ST+   Y  AG  +  LN+Y EMK +G+  +
Sbjct: 340 KGGQMDLAYEIMLEMPGKK--ILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLD 397

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            ++YN LL    +  R      + KEM  +G+  +  TY +LL  YG+     +   V++
Sbjct: 398 RVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFK 457

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK+  +  ++  Y+TL+ + +     +EA E+F + K +   + D   +S +I      
Sbjct: 458 EMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQA-GLKADVVLYSELINALCKN 516

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           G V  A  + +EM + G  PN+    S+I  +G++   + +V
Sbjct: 517 GLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLV 558



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 121/267 (45%), Gaps = 3/267 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  E A  L++   +     D   ++TL+      G  D    +  EM    + PN+
Sbjct: 304 SRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNV 363

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY+ + D   +A R      +Y EM   G+  +  +Y +LL  Y +    ED L V +E
Sbjct: 364 VTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKE 423

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G++  V  YN LL      G  +E   +F++MK  +   P+  T+S++I + S   
Sbjct: 424 MGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK-KDRVFPNLLTYSTLIDVYSKGS 482

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              EA  +F E  +AG + ++ + + LI    K    D  V  L+ + + GI P+     
Sbjct: 483 LYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYN 542

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSK 363
            +++   ++   E   LV+ V  SN +
Sbjct: 543 SIIDAFGRSTTAEF--LVDGVGASNER 567



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 130/304 (42%), Gaps = 49/304 (16%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++ T+GR  +    K +++     G       +++L+ AYG++ Y ++ + V+  MK  G
Sbjct: 193 MISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSG 252

Query: 222 MQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           ++ ++  YN ++  C   G       EIFE+M  +   QPD  T++S++ +CS  G    
Sbjct: 253 LKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRN-GVQPDRITYNSLLAVCSRGGLWEA 311

Query: 281 AEAMFNEMLEAGFE-----------------------------------PNLFVLTSLIQ 305
           A  +FNEM++ G +                                   PN+   +++  
Sbjct: 312 ARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMAD 371

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 365
            Y KA R +D +   N +  LGI  D      LL++  +  + E   L  C E  +S + 
Sbjct: 372 GYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFE-DALKVCKEMGSSGVK 430

Query: 366 YVV---KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCN-----CLIDLCVNLNLLENA 417
             V     LL+    +G F  E T +F  + KD  + + N      LID+    +L E A
Sbjct: 431 KDVVTYNALLDGYGKQGKF-NEVTRVFKEMKKD--RVFPNLLTYSTLIDVYSKGSLYEEA 487

Query: 418 CKLL 421
            ++ 
Sbjct: 488 MEVF 491



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           S+MI+     GKV  A+ +F   L  G+   +F  ++LI  YGK+   D+ ++    +  
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 326 LGITPD 331
            G+ P+
Sbjct: 251 SGLKPN 256


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 200/447 (44%), Gaps = 22/447 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  ++++ +      D   + TLI ++  AG  D  +++YE M+ +G+ P+  
Sbjct: 433 RANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTF 492

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G++        ++ EM D G  PN  TY  L+    +AR  +  L +YR+M
Sbjct: 493 TYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDM 552

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    GY +EA  +F +MK + N  PD   +  +I +    G 
Sbjct: 553 QNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQN-NWVPDEPVYGLLIDLWGKAGN 611

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   ++ ML AG  PN+    SL+  + +  R  D    L  +  LG+ P  +    
Sbjct: 612 VEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTL 671

Query: 338 LLNVMT--QTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATEL 388
           LL+  T  Q+P  ++G   E +  S    G+     L+     G       D   +  +L
Sbjct: 672 LLSCCTEAQSPY-DMGFCCELMAVS----GHPAHAFLQSMPAAGPDGQNVRDHVSKFLDL 726

Query: 389 FNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKS 447
            +S  ++ K+   + ++D      L E A  + E+     VY D I+ +S   W ++L  
Sbjct: 727 MHSEDREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAIREKSTCYWLINLHV 786

Query: 448 LSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL-- 505
           +S G A+TAL   +    + + +    P  + I TG G+   S    +S+    ++EL  
Sbjct: 787 MSDGTAVTALSRTLAWFRRQMLASGVGPNRIDIITGWGRR--SRVTGSSLVRQAVQELLH 844

Query: 506 --NAPFHDSPDKVGWFLTTEAAAKSWL 530
             + PF       G F+        WL
Sbjct: 845 VFSFPFFTENGNSGCFVGCGEPLSQWL 871



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y T++ +           ++ E M   + CQP+  T++ +I        + EA  +FN+M
Sbjct: 389 YTTMVGILGRAREFGAINKLLEQM-VKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQM 447

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
            E G EP+     +LI  + KA   D  +    R+ E+G++PD      ++N + ++
Sbjct: 448 QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKS 504


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE
            1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 205/423 (48%), Gaps = 18/423 (4%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++++   +++++K+Y    ++   + VY+ +K  G++P+  TYN L+    R +RP +  
Sbjct: 923  FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             + ++M + GL P  +TY SL+ A+G+ +  E    ++ E+  KG++L  + Y+T++ + 
Sbjct: 983  LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             D G   +A ++ + MK++   +P   T   ++   S  G   EAE + + + +   E  
Sbjct: 1043 RDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELT 1101

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT-QTPKEELGKLVE 355
                +S+I  Y +++  +  +  L  + + G+ PD R   C +   +    K E+  L++
Sbjct: 1102 TLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLK 1161

Query: 356  CVEKSNSKLGYVVKLL-----LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 410
             +E     L   ++LL     L   +++G F+K       SI  +    + N L++L   
Sbjct: 1162 ALEDIGFDLP--IRLLAGRPELLVSEVDGWFEK-----LKSIEDNAALNFVNALLNLLWA 1214

Query: 411  LNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA-L 468
              L   A  + +LG+   +++ D+   +   W    + LS GAAL AL +W++ +  A L
Sbjct: 1215 FELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVALTLWLDHMQDASL 1274

Query: 469  ESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKS 528
            E   E P  + + TG    +Y+   L    ++ L E+ +PF     + G  +    + + 
Sbjct: 1275 EGYPESPKSVVLITGTA--EYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSLRM 1332

Query: 529  WLE 531
            WL+
Sbjct: 1333 WLK 1335



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 122/241 (50%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L D  RN   R D   ++TL+       N DG + V+E+M+A   +P++ TYN ++
Sbjct: 280 LAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMI 339

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR     + + ++ E+   G  P+  TY SLL A+ R R  E    VY++M++ G  
Sbjct: 340 SVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG 399

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M    G  D A ++++DMK      PD+ T++ +I       +  EA A
Sbjct: 400 KDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAA 459

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           + +EML+ G +P L   ++LI  Y KA + ++     + +   G  PD+     +L+V+ 
Sbjct: 460 LMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519

Query: 344 Q 344
           +
Sbjct: 520 R 520



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 3/232 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +I+ YG    +    +V   ++  G  P++ T+N+L+    +     + + I+  M 
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G SP   +   LL A       E+   V  E+++ G ++S +    +L   A  G   
Sbjct: 815 RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTS 302
           E  +I+  MK++    P    +  MI +  C+GK V +AE M +EM EA F+  L +  S
Sbjct: 875 EVKKIYSSMKAA-GYLPTIRLYRMMIELL-CKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           +++ Y   +     V+   R+ E G+ PD+     L+ +  +  + E G L+
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLL 984



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/160 (18%), Positives = 77/160 (48%), Gaps = 3/160 (1%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            +E A  L++   ++  ++D + + T++K+   +G+      + + MK  G++P + T + 
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHL 1072

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            L+ +   +  P + + +   + D  +      Y+S++ AY R++     +    EMK++G
Sbjct: 1073 LMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEG 1132

Query: 222  MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            ++    ++   +   +   ++ E  E+   +K+ E+   D
Sbjct: 1133 LEPDHRIWTCFVRAAS---FSKEKIEVMLLLKALEDIGFD 1169



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y TLL  C    +  EA ++F D++ S  C+       SM+ +    G    A  +
Sbjct: 680 SSTMYETLLHCCVANEHYAEASQVFSDLRLS-GCEASESVCKSMVVVYCKLGFPETAHQV 738

Query: 285 FNEMLEAGFE----PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            N+    GF     P   + T +I+ YGK +        +  L + G TPD +    L++
Sbjct: 739 VNQAETKGFHFACSP---MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMS 795

Query: 341 VMTQ 344
              Q
Sbjct: 796 AYAQ 799


>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
          Length = 853

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 207/446 (46%), Gaps = 19/446 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  ++ A  +++  +   +  D   + TLI ++  AG  D  +++Y  M+ +G+ P+  
Sbjct: 407 RANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTF 466

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+  +      ++ EM +NG +PN  TY  ++    +AR  E+ + +Y++M
Sbjct: 467 TYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 526

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G 
Sbjct: 527 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR--RDWAPDEPVYGLLVDLWGKAGN 584

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   +  ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    
Sbjct: 585 VDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTL 644

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT----ELFNSIS 393
           LL+  T   + ++G   + +  +     ++  L L + +  G   ++ T    ++ +S  
Sbjct: 645 LLSCCT-VGQAQMGLCCQLMAITGHP-AHMFLLYLPDAEAGGQNVRDHTGYFLDMMHSED 702

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGA 452
           ++ K+   + +ID      L E A  + E+     VY D ++ +S + W ++L  +S G 
Sbjct: 703 RESKRGLMDAVIDFLHKSGLKEEAGFIWEVAAQKNVYPDSVREKSSSYWLINLHLMSEGT 762

Query: 453 ALTALH---IWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELN--- 506
           A+TAL     W +     L +G   P  + I TG G+ +    G + V +S  K LN   
Sbjct: 763 AVTALSRTLAWFHRQVLTLGTG---PERIDIVTGWGR-RSRVTGSSLVRQSIQKLLNLFE 818

Query: 507 APFHDSPDKVGWFLTTEAAAKSWLES 532
           +PF  +    G F+        WL +
Sbjct: 819 SPFFTTRGNTGCFVGCGEPLNKWLHN 844



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +     Y T++ +           E+ ++M S  +C+P   T++ +I        
Sbjct: 352 RQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEM-SRAHCKPTVVTYNRIIHAYGRANY 410

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F EM EAG+EP+     +LI  + KA   D  +    R+ E+G++PD      
Sbjct: 411 LKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSV 470

Query: 338 LLNVM 342
           ++N +
Sbjct: 471 MVNCL 475



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A   F+ +K     + D  T+++MI I     +    + + +EM  A  +P +     +I
Sbjct: 343 ALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRII 402

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             YG+A    + V+    + E G  P DR   C L
Sbjct: 403 HAYGRANYLKEAVKVFEEMQEAGYEP-DRVTYCTL 436


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 194/443 (43%), Gaps = 14/443 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  +++  +      D   + TLI ++  AG  D  L +Y+ M+A G+ P+  
Sbjct: 427 RANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTF 486

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++ EM + G  PN  TY  ++    +AR  +  L +YR+M
Sbjct: 487 TYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDM 546

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G Q     Y+ ++ +    GY DEA  +F +MK  +N  PD   +  ++ +    G 
Sbjct: 547 QSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMK-RKNWVPDEPVYGLLVDLWGKAGN 605

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   +  ML  G  PN+    SL+  + +  +  D    L  + ELG+ P  +    
Sbjct: 606 VEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTL 665

Query: 338 LLNVMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEATELFNSI 392
           LL+  T+     ++G   E +  +     ++  L L     +G    D   +  +L +S 
Sbjct: 666 LLSCCTEARSPYDMGIYCELMAVTGHP-AHMFLLSLPSAGPDGQNVRDHASKFLDLMHSE 724

Query: 393 SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLG 451
            ++ K+   + ++D      L E A  + E+     VY D ++ +    W ++L  +S G
Sbjct: 725 DRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPDAVKEKGSCYWLINLHVMSDG 784

Query: 452 AALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL----NA 507
            A+TAL   +    + +      P  + I TG G+   S    +S+    ++EL    + 
Sbjct: 785 TAVTALSRTLAWFRQQMLVSGISPSRIDIVTGWGRR--SRVTGSSMVRQAVQELLHIFSF 842

Query: 508 PFHDSPDKVGWFLTTEAAAKSWL 530
           PF       G F+        WL
Sbjct: 843 PFFTENGNSGCFVGCGEPLNRWL 865



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 15/174 (8%)

Query: 172 PWQVKTIYKEMTDNGLSPNW--------------NTYASLLRAYGRARYGEDTLSVYREM 217
           P+Q   + K++ D+ ++ N+              +TY +++   GRA+       +  +M
Sbjct: 347 PYQANQVLKQLQDHTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQM 406

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G Q +V  YN L+       Y ++A ++F +M+    C+PD  T+ ++I I +  G 
Sbjct: 407 VKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRV-GCEPDRVTYCTLIDIHAKAGF 465

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  A  M+  M  AG  P+ F  + +I C GKA       +    + E G  P+
Sbjct: 466 LDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPN 519


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 199/457 (43%), Gaps = 43/457 (9%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G    A  L+   RN+    D   ++T++ ++   GNFD   ++   M+  G   ++
Sbjct: 306 AKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDI 365

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LLD+ G+  +  +  ++ +EM   G SPN  TY++L+ AY +  +  D ++++++
Sbjct: 366 VTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQD 425

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K+ G+Q  V LY+TL+  C   G  DEA  + E+M +    +P+  T++S++       
Sbjct: 426 VKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEM-ADNGIRPNVITYNSLL------- 477

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD----------------VVRAL 320
              +A      M+   F    F L   +    K    DD                  R  
Sbjct: 478 ---DAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVF 534

Query: 321 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
             + + G+ P+      +LN  +     E+   L+E +   + ++  V   LL    I  
Sbjct: 535 REMAKNGVKPNVVTFSSILNACSHCASVEDASNLLEAMRVFDGRVYGVTHGLLMGFRIR- 593

Query: 380 DFKKEATELFN---SISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436
              ++A  LFN   ++  +   A+ N L D+  +    + A           V+      
Sbjct: 594 -VWRDAETLFNELTTLGHNTAVAFYNALTDVLWHFEQAQAAKD-------RHVWDKAWWH 645

Query: 437 SPTQWSLHLKSLSLGAALTALHIWINDLSKAL-ESGEEFPPLLGINTGHGKHKY--SDKG 493
           S  Q+ L L  +S+G+A   LH+W+  + K L +     P  + I TG GKH     +  
Sbjct: 646 SEQQFFLDLHFMSVGSAQAMLHLWLLYIRKFLCQRRSVLPKYMSILTGWGKHSKVPGESA 705

Query: 494 LASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 530
           +    E+HL E+N+PFH   +  G  +      + WL
Sbjct: 706 VKRAVEAHLLEMNSPFHVWGNNEGRLVCAGYQVQGWL 742



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 8/323 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  + A  ++DRA    +  +   +S+LI  YG +G     + ++E MK +  KPN++
Sbjct: 132 RLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLV 190

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN ++D   +         I++EM + G+SP+  T+ +L+ A GRA   E+   ++ EM
Sbjct: 191 VYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEM 250

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G+      YNTL+A     G       + E M  S   +P   T+S+MI   +  G 
Sbjct: 251 EERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGL 310

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             EA A+F EM     EP+     +++  + +    D+       + E G   D      
Sbjct: 311 AHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNA 370

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           LL+   +  K  E   L+E +++  +    +    L +   +  F ++A  LF    +DV
Sbjct: 371 LLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALF----QDV 426

Query: 397 KKAYCNCLIDLCVNLNLLENACK 419
           KKA      D+ +   L++  CK
Sbjct: 427 KKA--GLQPDVVLYSTLVDGCCK 447



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 126/265 (47%), Gaps = 4/265 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G+   A  ++     +    D   F+TLI   G A  ++ C  ++ EM+  G+  + 
Sbjct: 200 SKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDD 259

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +TYN L+ T  R  +      + + M   +G+ P+  TY++++  Y +     + +++++
Sbjct: 260 VTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQ 319

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM+ + ++     YNT++ + A +G  DEA  I   M+ +   + D  T+++++     +
Sbjct: 320 EMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAK-DIVTYNALLDSYGKQ 378

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           GK  EA ++  EM + G  PN+   ++LI  Y K     D +     + + G+ PD    
Sbjct: 379 GKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLY 438

Query: 336 GCLLN--VMTQTPKEELGKLVECVE 358
             L++      +P E L  L E  +
Sbjct: 439 STLVDGCCKNGSPDEALALLEEMAD 463



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 42/247 (17%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEM---KAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           + P+    +++  G +G ++  +  ++ M   + +  + + +T + ++ ++GR  R    
Sbjct: 81  LGPDDLPFIVRELGHSGQWEKVVKSFDWMVLQQNLRSQWDKVT-STIISSLGRLGRSDWA 139

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + I+      G   N   Y+SL+ AYGR+                               
Sbjct: 140 QLIFDRAVGAGFGNNVFVYSSLICAYGRS------------------------------- 168

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G   +A EIFE MK    C+P+   ++++I  CS  G    A  +F EMLE G  P
Sbjct: 169 ----GKLAKAVEIFEAMKVV--CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSP 222

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLV 354
           +     +LI   G+A R ++  R    + E GI  DD     L+    +  +  LG  L+
Sbjct: 223 DRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALM 282

Query: 355 ECVEKSN 361
           E + KS+
Sbjct: 283 ETMAKSS 289


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 206/446 (46%), Gaps = 19/446 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  ++ A  +++  +   +  D   + TLI ++  AG  D  +++Y  M+ +G+ P+  
Sbjct: 407 RANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTF 466

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+  +      ++ EM +NG +PN  TY  ++    +AR  E+ + +Y++M
Sbjct: 467 TYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 526

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G 
Sbjct: 527 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR--RDWAPDEPVYGLLVDLWGKAGN 584

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   +  ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    
Sbjct: 585 VDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTL 644

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT----ELFNSIS 393
           LL+  T+  + ++G L   +        ++  L L + +  G   ++ T    ++ +S  
Sbjct: 645 LLSCCTEA-QAQMG-LCGQLMAITGHPAHMFLLYLPDAEPGGQNVRDHTGYFLDMMHSED 702

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGA 452
           ++ K+   + +ID      L E A  + E+     VY D ++ +S + W ++L  +S G 
Sbjct: 703 RESKRGLMDAVIDFLHKSGLKEEAGLIWEVAAQKNVYPDSVREKSSSYWLINLHLMSEGT 762

Query: 453 ALTALH---IWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNA-- 507
           A+TAL     W +     L +G   P  + I TG G+ +    G + V +S  K LN   
Sbjct: 763 AVTALSRTLAWFHRQILTLGTG---PERIDIVTGWGR-RSRVTGSSLVRQSVQKLLNLFE 818

Query: 508 -PFHDSPDKVGWFLTTEAAAKSWLES 532
            PF  +    G F+        WL +
Sbjct: 819 FPFFTTRGNTGCFVGCGEPLNKWLHN 844



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +     Y T++ +           ++ ++M S  +C+P   T++ +I        
Sbjct: 352 RQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEM-SRAHCKPTVVTYNRIIHAYGRANY 410

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F EM EAG+EP+     +LI  + KA   D  +    R+ E+G++PD      
Sbjct: 411 LKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSA 470

Query: 338 LLNVM 342
           ++N +
Sbjct: 471 MVNCL 475



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A   F+ +K     + D  T+++MI I     +    + + +EM  A  +P +     +I
Sbjct: 343 ALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRII 402

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             YG+A    + V+    + E G  P DR   C L
Sbjct: 403 HAYGRANYLKEAVKVFEEMQEAGYEP-DRVTYCTL 436


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 200/447 (44%), Gaps = 22/447 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  ++++ +      D   + TLI ++  AG  D  +++YE M+ +G+ P+  
Sbjct: 430 RANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTF 489

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G++        ++ EM D G  PN  TY  L+    +AR  +  L +YR+M
Sbjct: 490 TYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDM 549

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    GY +EA  +F +M+ + +  PD   +  ++ +    G 
Sbjct: 550 QNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQN-HWVPDEPVYGLLVDLWGKAGN 608

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   ++ ML AG  PN+    SL+  + +  R  D    L  +  LG+ P  +    
Sbjct: 609 VEKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTL 668

Query: 338 LLNVMT--QTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATEL 388
           LL+  T  Q+P  ++G   E +  S    G+     L+     G       D   +  +L
Sbjct: 669 LLSCCTEAQSPY-DMGFCCELMAVS----GHPAHAFLQSMPAAGPDGQNVRDHVSKFLDL 723

Query: 389 FNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKS 447
            +S  ++ K+   + ++D      L E A  + E+     VY D ++ +S   W ++L  
Sbjct: 724 MHSEDREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKSTCYWLINLHV 783

Query: 448 LSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL-- 505
           +S G A+TAL   +    + + +    P  + I TG G+   S    +S+    ++EL  
Sbjct: 784 MSDGTAVTALSRTLAWFRRQMLASGVGPNRIDIVTGWGRR--SRVTGSSLVRQAVQELLH 841

Query: 506 --NAPFHDSPDKVGWFLTTEAAAKSWL 530
             + PF       G F+        WL
Sbjct: 842 VFSFPFFTENSNSGCFVGCGEPLSQWL 868



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y T++ +           ++ E M   + CQP+  T++ +I        + EA  +FN+M
Sbjct: 386 YTTMVGILGRAREFGAINKLLEQM-VKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQM 444

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
            E G EP+     +LI  + KA   D  +    R+ E+G++PD      ++N + ++
Sbjct: 445 QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKS 501


>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 878

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 219/485 (45%), Gaps = 58/485 (11%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++A   E A  +YD  ++   R+D  +++TL+ LY   G F+  +  ++EM+  G+K ++
Sbjct: 378 SKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDV 437

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L++  GR  +  +V+ ++ EM    + PN  TY++L++ Y + R   + + VYRE
Sbjct: 438 VTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRE 497

Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +K++GM+  V  Y+ L+ A+C + G  + +  +  D+ + +  +P+  T++S+I      
Sbjct: 498 LKQEGMKTDVVFYSALIDALCKN-GLIESSLRLL-DVMTEKGSRPNVVTYNSIIDAFKIG 555

Query: 276 GKVSEAEAMFNEMLEAG---FEP-------------------NLFVLTSLIQCYG----- 308
            ++   E   +   +A     +P                   N  ++  L Q        
Sbjct: 556 QQLPALECAVDTPFQANEHQIKPSSSRLIVGNFQDQKTDIGNNDEIMKMLEQLAAEKAGL 615

Query: 309 ----KAQRTDD--VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361
               K  R D+  +V+   ++ E+ I P+      +LN  +     ++  KL++ +   +
Sbjct: 616 TKKDKRSRQDNFFIVQIFQKMHEMEIKPNVVTFSAILNACSCCETFQDASKLLDALRVFD 675

Query: 362 SKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKL 420
           S++ G    LL+  +    D  +   +    +      A+ N L D+  +          
Sbjct: 676 SQVYGVAHGLLMGHRQGIWDQTQTLFDELEHLDSSTASAFYNALTDMLWHFG-------- 727

Query: 421 LELGLTLEVYTDIQSRSPTQW-------SLHLKSLSLGAALTALHIWINDLSKALESGEE 473
            +LG  + V   I+ R+   W       SL L   S GAA   +H W+ +L   +  G++
Sbjct: 728 QKLGAQMVV---IEGRNRNVWKGGWSTESLDLHLTSCGAACAMVHTWLLELRTTVFGGQK 784

Query: 474 FPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 531
            PP+L I TG GKH     +  L    E+ L  + APF  S   +G F +      +WL 
Sbjct: 785 LPPILSILTGWGKHSKVVGNGTLRKAVEALLNGIGAPFQISECNLGRFKSEGPEVAAWLR 844

Query: 532 SRSSL 536
             S+L
Sbjct: 845 QPSTL 849



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 2/224 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TI 178
           D   +++L+K     G +  C ++  EM+  G+  ++ TYN  +D + +  R    +  I
Sbjct: 295 DRLTYNSLLKTCVAKGRWKLCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAI 354

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM    + PN  TY++L+  Y +A   ED L++Y EMK   ++L    YNTL+ + A+
Sbjct: 355 DVEMPAKNIWPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYAN 414

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +G+ +EA   F++M+     + D  T++++I       K  E + +F+EM      PN  
Sbjct: 415 LGWFEEAVGKFKEMECC-GIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDL 473

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
             ++LI+ Y K +   + +     L + G+  D  F   L++ +
Sbjct: 474 TYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDAL 517



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 160/367 (43%), Gaps = 77/367 (20%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   +E+A  L++ +R   +     +FS +I   G    F   +++   M   G++PN++
Sbjct: 202 RLKKIELALDLFEESRTRGYGNTVYSFSAMISALGRNNRFSEAVSLLRSMGKFGLEPNLV 261

Query: 158 TYNNLLDTMGRAKRPWQVKTIY-KEMTDNGLSPNWNTYASLLR---AYGRARYGEDTLSV 213
           TYN ++D   + +  +++   + +EM   G  P+  TY SLL+   A GR +   D L+ 
Sbjct: 262 TYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCVAKGRWKLCRDLLA- 320

Query: 214 YREMKEKGMQLSVTLYNTLL-AMC-----------ADV-------------------GYT 242
             EM+ KG+   V  YNT + A+C            DV                   GY+
Sbjct: 321 --EMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNIWPNVVTYSTLMAGYS 378

Query: 243 -----DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
                ++A  I+++MK     + D  ++++++ + +  G   EA   F EM   G + ++
Sbjct: 379 KAERFEDALNIYDEMKHLL-IRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDV 437

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
               +LI+ YG+  +  +V +  + +    I P+D     L+ + T+             
Sbjct: 438 VTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTYSTLIKIYTKG------------ 485

Query: 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID-LCVNLNLLEN 416
                      ++  E  D+  + K+E       +  DV   + + LID LC N  L+E+
Sbjct: 486 -----------RMYAEAMDVYRELKQEG------MKTDV--VFYSALIDALCKN-GLIES 525

Query: 417 ACKLLEL 423
           + +LL++
Sbjct: 526 SLRLLDV 532



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 15/278 (5%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAF-----STLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           G++ +A   YD A +   R   N F     S +I+  G     +  L+++EE +  G   
Sbjct: 167 GDLLLATRTYDFAMS---RATDNTFMGKLTSNMIRTLGRLKKIELALDLFEESRTRGYGN 223

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSV 213
            + +++ ++  +GR  R  +  ++ + M   GL PN  TY +++ A  +     E  +  
Sbjct: 224 TVYSFSAMISALGRNNRFSEAVSLLRSMGKFGLEPNLVTYNAIIDAGAKGELTFEIVVKF 283

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             EM   G       YN+LL  C   G      ++  +M+  +    D +T+++ +    
Sbjct: 284 LEEMIAAGCMPDRLTYNSLLKTCVAKGRWKLCRDLLAEME-WKGIGRDVYTYNTYVDALC 342

Query: 274 CRGKVSEA-EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             G++  A  A+  EM      PN+   ++L+  Y KA+R +D +   + +  L I  D 
Sbjct: 343 KGGRMDLARHAIDVEMPAKNIWPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDR 402

Query: 333 RFCGCLLNVMTQTP--KEELGKL--VECVEKSNSKLGY 366
                L+ +       +E +GK   +EC    N  + Y
Sbjct: 403 VSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTY 440


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/444 (23%), Positives = 192/444 (43%), Gaps = 16/444 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  ++ + +      D   + TLI ++  AG  D  +++Y+ M+A G+ P+  
Sbjct: 396 RANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTF 455

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++ EM   G +PN  T+  ++  + +AR  E  L +YR+M
Sbjct: 456 TYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDM 515

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G Q     Y+ ++ +    G+ +EA  +F +M+  +N  PD   +  ++ +    G 
Sbjct: 516 QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQ-RKNWVPDEPVYGLLVDLWGKAGN 574

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   + EML AG  PN+    SL+  + +  R  +    L  +  LG+ P  +    
Sbjct: 575 VEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTL 634

Query: 338 LLNVMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELF 389
           LL+  T      ++G   + +  S    G+   + L +    G       D      +  
Sbjct: 635 LLSCCTDARSNFDMGFCGQLMAVS----GHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFM 690

Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
           +S  ++ K+   + ++D      L E A  + E+     VY D ++ +S + W ++L  +
Sbjct: 691 HSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAVKNVYPDALREKSCSYWLINLHVM 750

Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELN 506
           S G A+ AL   +    K +    + P  + I TG G+         +    E  L   N
Sbjct: 751 SEGTAVIALSRTLAWFRKQMLVTGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFN 810

Query: 507 APFHDSPDKVGWFLTTEAAAKSWL 530
            PF       G F+      K WL
Sbjct: 811 FPFFTENGNSGCFVGCGEPLKKWL 834



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 230 NTLLAMCADVGYTDE--AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +T   M  ++G   +  A     D    + C+P++ T++ +I        ++EA  +F +
Sbjct: 350 HTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQ 409

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           M EAG EP+     +LI  + KA   D  +    R+   G++PD      ++N +
Sbjct: 410 MQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCL 464



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A   F  +K     + D  T+++M+       +      + +EM++ G +PN      LI
Sbjct: 332 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLI 391

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             YG+A   ++ +    ++ E G  P DR   C L
Sbjct: 392 HSYGRANYLNEAMNVFKQMQEAGCEP-DRVTYCTL 425


>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
          Length = 859

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 204/445 (45%), Gaps = 17/445 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  +++  +   +  D   + TLI ++   G  +  +++Y  M+ +G+ P+  
Sbjct: 413 RANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTF 472

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+         ++ EM +NG +PN  TY  ++    +AR  E+ + +Y++M
Sbjct: 473 TYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 532

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G 
Sbjct: 533 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR--HDWAPDEPVYGLLVDLWGKAGN 590

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   ++ ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    
Sbjct: 591 VDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTL 650

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF----NSIS 393
           LL+  T+  + ++G   + +  +     ++  L L + +  G   ++ T  F    +S  
Sbjct: 651 LLSCCTEA-QAQMGLCCQLMAITGHP-AHMFLLYLPDAEPGGQNVRDHTRYFLDMMHSED 708

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGA 452
           ++ K+   + +ID      L E A  + E+     VY D ++ + P+ W ++L  +S G 
Sbjct: 709 RESKRGLMDAVIDFLHKSGLKEEAGFIWEVAAQRNVYPDSVREKDPSYWLINLHLMSEGT 768

Query: 453 ALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFES-----HLKELNA 507
           A+TAL   +    + + +  + P  + I TG G+ +    G + V +S     HL E   
Sbjct: 769 AVTALSRTLAWFHRQILTMGKCPERIDIVTGWGR-RSRVTGSSLVRQSVQKLLHLFEF-- 825

Query: 508 PFHDSPDKVGWFLTTEAAAKSWLES 532
           PF  +    G F+        WL +
Sbjct: 826 PFVTTRGNTGCFVGCGEPLNRWLHN 850



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +     Y T++ +           ++ ++M S  +C+P   T++ +I        
Sbjct: 358 RQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSV-HCKPTVVTYNRIIHAYGRANY 416

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F EM +AG+EP+     +LI  + K    +  +    R+ E+G++PD      
Sbjct: 417 LREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSA 476

Query: 338 LLNVM 342
           ++N +
Sbjct: 477 MVNCL 481


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 203/448 (45%), Gaps = 9/448 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  ++++ +    + D   + TLI ++  AG  D  +++Y+ M+A G+ P+  
Sbjct: 411 RANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTF 470

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++ EM D G +PN  TY  ++  + +AR  ++ L +YR+M
Sbjct: 471 TYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDM 530

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    GY +EA  +F +M+  +N  PD   +  ++ +    G 
Sbjct: 531 QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ-QKNWIPDEPVYGLLVDLWGKAGN 589

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   +  ML AG  PN+    SL+  + +  +  +    L  +  LG+ P  +    
Sbjct: 590 VEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTL 649

Query: 338 LLNVMTQ-TPKEELGKLVECVEKSNSKLG-YVVKLLLEEQDIEG--DFKKEATELFNSIS 393
           LL+  T    K ++G   + +  +      +++K+     D E   +      +L +S  
Sbjct: 650 LLSCCTDGRSKLDMGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSED 709

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGA 452
           ++ K+   + ++D        E A  + E+     V+ D ++ +S + W ++L  +S G 
Sbjct: 710 RESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGT 769

Query: 453 ALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFH 510
           A+TAL   +    K + +    P  + I TG G+         +    E  L    +PF 
Sbjct: 770 AVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFF 829

Query: 511 DSPDKVGWFLTTEAAAKSWLESRSSLVS 538
                 G F+ +      WL  +S LVS
Sbjct: 830 TESGNSGCFVGSGEPLNRWL-LQSHLVS 856



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 162/369 (43%), Gaps = 21/369 (5%)

Query: 83  KSPRASKLKEKSYDTRAGNVEMAFGLYDRAR----------NEKWRIDPNAFSTLIKLYG 132
           K P  + L  + Y      VE    +  R R          N   RID    + ++K   
Sbjct: 283 KGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMN 342

Query: 133 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192
             GN  G    Y   +  G K +  TY  ++  +GRAK+   +  +  EM  +G  PN  
Sbjct: 343 DYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTV 400

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           TY  L+ +YGRA Y  + ++V+ +M+E G +     Y TL+ + A  G+ D A ++++ M
Sbjct: 401 TYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRM 460

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           ++     PD++T+S +I      G +  A  +F EM++ G  PNL     ++  + KA+ 
Sbjct: 461 QAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN 519

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--ECVEKS----NSKLGY 366
             + ++    +   G  PD      ++ V+      E  + V  E  +K+        G 
Sbjct: 520 YQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGL 579

Query: 367 VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426
           +V L  +  ++E  ++     L   +  +V    CN L+   + +N +  A +LL+  L 
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT--CNSLLSTFLRVNKIAEAYELLQNMLA 637

Query: 427 LEVYTDIQS 435
           L +   +Q+
Sbjct: 638 LGLRPSLQT 646


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 200/447 (44%), Gaps = 23/447 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G    A  L+   RN+    D   ++T++ ++   GNFD   ++   M+  G   ++
Sbjct: 307 AKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDI 366

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LLD+ G+  +  +  ++ +EM   G SPN  TY++L+ AY +  +  D ++++++
Sbjct: 367 VTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQD 426

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-----TI 271
           +K+ G+Q  V LY+TL+  C   G  DEA  + E+M +    +P+  T++S++       
Sbjct: 427 VKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEM-ADNGIRPNVITYNSLLDAYGRQC 485

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              R    +        +    +P++ +   SL+    K        R    + + G+ P
Sbjct: 486 LMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKP 545

Query: 331 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
           +      +LN  +     E+   L+E +   + ++  V   LL    I     ++A  LF
Sbjct: 546 NVVTFSSILNACSHCASVEDASSLLEAMRVFDGRVYGVTHGLLMGFRIR--VWRDAETLF 603

Query: 390 N---SISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLK 446
           N   ++  +   A+ N L D+  +    + A           V+      S  Q+ L L 
Sbjct: 604 NELTTLGHNTAVAFYNALTDVLWHFEQAKAAKD-------RHVWDKAWWHSEQQFFLDLH 656

Query: 447 SLSLGAALTALHIWINDLSKAL-ESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLK 503
            +S+G+A   LH+W+  + K L +     P  + I TG GKH     +  +    E+HL 
Sbjct: 657 FMSVGSAQAMLHLWLLYIRKFLCQRRSVLPKYMSILTGWGKHSKVPGESAVKRAVEAHLL 716

Query: 504 ELNAPFHDSPDKVGWFLTTEAAAKSWL 530
           E+N+PFH   +  G  +      + WL
Sbjct: 717 EMNSPFHVWGNNEGRLVCAGYQVQGWL 743



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 8/323 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  + A  ++DRA    +  +   +S+LI  YG +G     + ++E MK +  KPN++
Sbjct: 133 RLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLV 191

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN ++D   +         I++EM + G+SP+  T+ +L+ A GRA   E+   ++ EM
Sbjct: 192 VYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEM 251

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G+      YNTL+A     G       + E M  S   +P   T+S+MI   +  G 
Sbjct: 252 EERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGL 311

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             EA A+F EM     EP+     +++  + +    D+       + E G   D      
Sbjct: 312 AHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNA 371

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           LL+   +  K  E   L+E +++  +    +    L +   +  F ++A  LF    +DV
Sbjct: 372 LLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALF----QDV 427

Query: 397 KKAYCNCLIDLCVNLNLLENACK 419
           KKA      D+ +   L++  CK
Sbjct: 428 KKA--GLQPDVVLYSTLVDGCCK 448



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 126/265 (47%), Gaps = 4/265 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G+   A  ++     +    D   F+TLI   G A  ++ C  ++ EM+  G+  + 
Sbjct: 201 SKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDD 260

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +TYN L+ T  R  +      + + M   +G+ P+  TY++++  Y +     + +++++
Sbjct: 261 VTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQ 320

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM+ + ++     YNT++ + A +G  DEA  I   M+ +   + D  T+++++     +
Sbjct: 321 EMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAK-DIVTYNALLDSYGKQ 379

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           GK  EA ++  EM + G  PN+   ++LI  Y K     D +     + + G+ PD    
Sbjct: 380 GKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLY 439

Query: 336 GCLLN--VMTQTPKEELGKLVECVE 358
             L++      +P E L  L E  +
Sbjct: 440 STLVDGCCKNGSPDEALALLEEMAD 464



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 42/247 (17%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEM---KAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           + P+    +++  G +G ++  +  ++ M   + +  + + +T + ++ ++GR  R    
Sbjct: 82  LGPDDLPFIVRELGHSGQWEKVVKSFDWMVLQQNLRSQWDKVT-STIISSLGRLGRSDWA 140

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + I+      G   N   Y+SL+ AYGR+                               
Sbjct: 141 QLIFDRAVGAGFGNNVFVYSSLICAYGRS------------------------------- 169

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G   +A EIFE MK    C+P+   ++++I  CS  G    A  +F EMLE G  P
Sbjct: 170 ----GKLAKAVEIFEAMKVV--CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSP 223

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLV 354
           +     +LI   G+A R ++  R    + E GI  DD     L+    +  +  LG  L+
Sbjct: 224 DRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALM 283

Query: 355 ECVEKSN 361
           E + KS+
Sbjct: 284 ETMAKSS 290


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 195/446 (43%), Gaps = 20/446 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  ++DR +    + D   + TLI ++  AG  D  L++Y++M+   + P+  
Sbjct: 426 RANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTF 485

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++ EM D G  PN  TY  ++    +AR     L +YR+M
Sbjct: 486 TYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDM 545

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G Q     Y+ ++ +    G+ +EA  IF +MK  +N  PD   +  ++ +    G 
Sbjct: 546 QNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMK-RKNWVPDEPVYGLLVDLWGKVGN 604

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V ++   +  ML AG  PN+    SL+  + +  R  D    L  +  LG+ P  +    
Sbjct: 605 VEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTL 664

Query: 338 LLNVMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELF 389
           LL+  T+     ++G   E +  +    G+   + L      G       D   +  +L 
Sbjct: 665 LLSCCTEARSSFDMGFCGELMAVT----GHPAHMFLLSMPAAGPDGQNVRDHVSKFLDLM 720

Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
           +S  ++ K+   + ++D      L E A  + E+     VY D ++ +S   W ++L  +
Sbjct: 721 HSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVREKSSCYWLINLHFM 780

Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL--- 505
           S G A+TAL   +    + +      P  + I TG G+   S    AS+    ++EL   
Sbjct: 781 SDGTAVTALSRTLAWFHREMLVSGTVPSRIDIVTGWGRR--SRVTGASLVRQAVQELLHI 838

Query: 506 -NAPFHDSPDKVGWFLTTEAAAKSWL 530
            + PF       G F+        WL
Sbjct: 839 FSFPFFTENGNSGCFVGRGEPLGRWL 864



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A   F  +K     + D  T+++M+ I     +      +  EM+  G +PN+     LI
Sbjct: 362 ALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLI 421

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             YG+A   ++ V   +R+ E G  P DR   C L
Sbjct: 422 HSYGRANYLNEAVSVFDRMQEAGCQP-DRVTYCTL 455



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +     Y T++ +           ++  +M   + CQP+  T++ +I        
Sbjct: 371 RQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEM-VRDGCQPNVVTYNRLIHSYGRANY 429

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           ++EA ++F+ M EAG +P+     +LI  + KA   D  +    ++ E  ++PD      
Sbjct: 430 LNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSV 489

Query: 338 LLNVM 342
           ++N +
Sbjct: 490 IINCL 494


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 198/447 (44%), Gaps = 22/447 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  ++++ +      D   + TLI ++  AG  +  + +Y+ M+A G+ P+  
Sbjct: 385 RANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTF 444

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++ EM + G  PN  TY  ++    +AR  ++ L +YR+M
Sbjct: 445 TYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDM 504

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    GY DEA  IF +MK  +N  PD   +  ++ +    G 
Sbjct: 505 QNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMK-RKNWVPDEPVYGLLVDLWGKAGN 563

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   +  ML AG  PN+    SL+  + +  R  D    L  +  LG+ P  +    
Sbjct: 564 VEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQTYTL 623

Query: 338 LLNVMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLL--------EEQDIEGDFKKEATEL 388
           LL+  T+     ++G    C  +  S  G+   + L        + Q++     K   ++
Sbjct: 624 LLSCCTEARSPYDMG----CYCELMSVTGHPAHMFLSSLPSAGPDGQNVRHHVSK-FLDM 678

Query: 389 FNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKS 447
            +S  ++ K+   + ++D      L E A  + E+     VY D ++ +S   W ++L  
Sbjct: 679 MHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEIAAQRNVYPDAVKEKSSCYWLINLHV 738

Query: 448 LSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKEL-- 505
           +S G A+TAL   +    + +      P  + I TG G+   S    +S+    ++EL  
Sbjct: 739 MSEGTAVTALSRTLAWFRRQMLVSGVIPSRIDIVTGWGRR--SRVTGSSLVRQAVQELLH 796

Query: 506 --NAPFHDSPDKVGWFLTTEAAAKSWL 530
             + PF       G F+        WL
Sbjct: 797 IFSFPFFTENGNTGCFVGCGEPLSRWL 823



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 171/364 (46%), Gaps = 24/364 (6%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G K +  TY  ++  +GRAK+   +  +  +M  +G  P   TY  L+ +YGRA Y  D 
Sbjct: 333 GFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDA 392

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + V+ +M++ G +     Y TL+ + A  G+ + A E+++ M+++    PD++T+S MI 
Sbjct: 393 VEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAA-GLSPDTFTYSVMIN 451

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G ++ A+ +F EM+E G  PNL     +I    KA+   + ++    +   G  P
Sbjct: 452 CLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEP 511

Query: 331 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSN-----SKLGYVVKLLLEEQDIEGDFKKE 384
           D      ++ V+  +   +E   +   +++ N        G +V L  +  ++E  ++  
Sbjct: 512 DKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWY 571

Query: 385 ATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE----LGL--TLEVYTDI----- 433
              L   +  +V    CN L+   + +N L +A  LL+    LGL  +L+ YT +     
Sbjct: 572 QAMLHAGLCPNVPT--CNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQTYTLLLSCCT 629

Query: 434 QSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLG--INTGHGKHKYSD 491
           ++RSP     + + +S+       H++++ L  A   G+     +   ++  H + + S 
Sbjct: 630 EARSPYDMGCYCELMSVTG--HPAHMFLSSLPSAGPDGQNVRHHVSKFLDMMHSEDRESK 687

Query: 492 KGLA 495
           +GL 
Sbjct: 688 RGLV 691



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A   F  +K     + D +T+++M+ I     +      + ++M+  G +P +     LI
Sbjct: 321 ALGFFHWLKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLI 380

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             YG+A   +D V   N++ + G  P DR   C L
Sbjct: 381 HSYGRANYLNDAVEVFNQMQKAGCEP-DRVTYCTL 414


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 199/444 (44%), Gaps = 16/444 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  ++++ +    + D   + TLI ++  AG  D  +++Y+ M+A G+ P+  
Sbjct: 411 RANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTF 470

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++ EM D G +PN  TY  ++  + +AR  ++ L +YR+M
Sbjct: 471 TYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDM 530

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    GY +EA  +F +M+  +N  PD   +  ++ +    G 
Sbjct: 531 QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ-QKNWIPDEPVYGLLVDLWGKAGN 589

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   +  ML AG  PN+    SL+  + +  +  +    L  +  LG+ P  +    
Sbjct: 590 VEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTL 649

Query: 338 LLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEAT---ELF 389
           LL+  T    K ++G   + +  +    G+   + L +    G    + +  A    +L 
Sbjct: 650 LLSCCTDGRSKLDMGFCGQLMAST----GHPAHMFLLKMPAAGPDGENVRNHANNFLDLM 705

Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
           +S  ++ K+   + ++D        E A  + E+     V+ D ++ +S + W ++L  +
Sbjct: 706 HSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVM 765

Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELN 506
           S G A+TAL   +    K + +    P  + I TG G+         +    E  L    
Sbjct: 766 SEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFG 825

Query: 507 APFHDSPDKVGWFLTTEAAAKSWL 530
           +PF       G F+ +      WL
Sbjct: 826 SPFFTESGNSGCFVGSGEPLNRWL 849



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 162/369 (43%), Gaps = 21/369 (5%)

Query: 83  KSPRASKLKEKSYDTRAGNVEMAFGLYDRAR----------NEKWRIDPNAFSTLIKLYG 132
           K P  + L  + Y      VE    +  R R          N   RID    + ++K   
Sbjct: 283 KGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMN 342

Query: 133 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192
             GN  G    Y   +  G K +  TY  ++  +GRAK+   +  +  EM  +G  PN  
Sbjct: 343 DYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTV 400

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           TY  L+ +YGRA Y  + ++V+ +M+E G +     Y TL+ + A  G+ D A ++++ M
Sbjct: 401 TYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRM 460

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           ++     PD++T+S +I      G +  A  +F EM++ G  PNL     ++  + KA+ 
Sbjct: 461 QAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN 519

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--ECVEKS----NSKLGY 366
             + ++    +   G  PD      ++ V+      E  + V  E  +K+        G 
Sbjct: 520 YQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGL 579

Query: 367 VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426
           +V L  +  ++E  ++     L   +  +V    CN L+   + +N +  A +LL+  L 
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT--CNSLLSTFLRVNKIAEAYELLQNMLA 637

Query: 427 LEVYTDIQS 435
           L +   +Q+
Sbjct: 638 LGLRPSLQT 646


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 199/444 (44%), Gaps = 16/444 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  ++++ +    + D   + TLI ++  AG  D  +++Y+ M+A G+ P+  
Sbjct: 528 RANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTF 587

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++ EM D G +PN  TY  ++  + +AR  ++ L +YR+M
Sbjct: 588 TYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDM 647

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    GY +EA  +F +M+  +N  PD   +  ++ +    G 
Sbjct: 648 QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ-QKNWIPDEPVYGLLVDLWGKAGN 706

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   +  ML AG  PN+    SL+  + +  +  +    L  +  LG+ P  +    
Sbjct: 707 VEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTL 766

Query: 338 LLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEAT---ELF 389
           LL+  T    K ++G   + +  +    G+   + L +    G    + +  A    +L 
Sbjct: 767 LLSCCTDGRSKLDMGFCGQLMAST----GHPAHMFLLKMPAAGPDGENVRNHANNFLDLM 822

Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
           +S  ++ K+   + ++D        E A  + E+     V+ D ++ +S + W ++L  +
Sbjct: 823 HSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVM 882

Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELN 506
           S G A+TAL   +    K + +    P  + I TG G+         +    E  L    
Sbjct: 883 SEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFG 942

Query: 507 APFHDSPDKVGWFLTTEAAAKSWL 530
           +PF       G F+ +      WL
Sbjct: 943 SPFFTESGNSGCFVGSGEPLNRWL 966



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 162/369 (43%), Gaps = 21/369 (5%)

Query: 83  KSPRASKLKEKSYDTRAGNVEMAFGLYDRAR----------NEKWRIDPNAFSTLIKLYG 132
           K P  + L  + Y      VE    +  R R          N   RID    + ++K   
Sbjct: 400 KGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMN 459

Query: 133 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192
             GN  G    Y   +  G K +  TY  ++  +GRAK+   +  +  EM  +G  PN  
Sbjct: 460 DYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTV 517

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           TY  L+ +YGRA Y  + ++V+ +M+E G +     Y TL+ + A  G+ D A ++++ M
Sbjct: 518 TYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRM 577

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           ++     PD++T+S +I      G +  A  +F EM++ G  PNL     ++  + KA+ 
Sbjct: 578 QAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN 636

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--ECVEKS----NSKLGY 366
             + ++    +   G  PD      ++ V+      E  + V  E  +K+        G 
Sbjct: 637 YQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGL 696

Query: 367 VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426
           +V L  +  ++E  ++     L   +  +V    CN L+   + +N +  A +LL+  L 
Sbjct: 697 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT--CNSLLSTFLRVNKIAEAYELLQNMLA 754

Query: 427 LEVYTDIQS 435
           L +   +Q+
Sbjct: 755 LGLRPSLQT 763


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 224/478 (46%), Gaps = 50/478 (10%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G ++ A  +++  +     +D  +++TL+ +Y   G F+  L+V +EM+  G++ ++
Sbjct: 377 AKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDV 436

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL   G+  R  +V+ +++EM    +SPN  TY++L+  Y +    ++ + V+RE
Sbjct: 437 VTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFRE 496

Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            K+ G++  V LY+ L+ A+C + G  + +  + ++M + E  +P+  T++S+I      
Sbjct: 497 FKQAGLKADVVLYSALIDALCKN-GLVESSVTLLDEM-TKEGIRPNVVTYNSII---DAF 551

Query: 276 GKVSEAEAMFNE-----MLEAGFEPNLFVLTSL------------IQCYGK--------- 309
           G+ + A+ + ++      L+     ++ V  ++            I+ +GK         
Sbjct: 552 GRSASAQCVVDDSGETTALQVESLSSIVVQEAIESQAADKEDNRIIEIFGKLAAEKACEA 611

Query: 310 ----AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-SNSK 363
                Q    ++    ++ EL I P+      +LN  ++    E+   L+E +    N  
Sbjct: 612 KNSGKQEILCILGVFQKMHELKIKPNVVTFSAILNACSRCDSFEDASMLLEELRLFDNQV 671

Query: 364 LGYVVKLLLEEQDIEGDFKKEATELFNSI---SKDVKKAYCNCLIDLCVNLNLLENACKL 420
            G    LL+  ++   +   +A  LF+ +         A+ N L D+  +      A  +
Sbjct: 672 YGVAHGLLMGYRE---NVWLQAQSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV 728

Query: 421 LELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGI 480
           +  G   +V+ +I S S     L L  +S GAA   +H W+ ++   +  G E P LL I
Sbjct: 729 VLEGKRRQVWENIWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVFEGHELPKLLSI 784

Query: 481 NTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSL 536
            TG GKH     D  L    E+ L  + APF  +   +G F++T +   +WL+   +L
Sbjct: 785 LTGWGKHSKVVGDSALRRAVEALLIGMGAPFRLAKCNLGRFISTGSVVAAWLKESGTL 842



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 8/331 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE+A  ++D A  E +     AFS LI  YG +G  +  + V++ MK+ G+ PN++
Sbjct: 202 RLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLV 261

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D  G+    + +V  I+  M  NG+ P+  T+ SLL    R    E    ++  
Sbjct: 262 TYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSA 321

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M +KG+   +  YNTLL      G  D AFEI  +M  ++N  P+  T+S+MI   +  G
Sbjct: 322 MVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEM-PTKNILPNVVTYSTMIDGYAKVG 380

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFC 335
           ++ +A  MFNEM   G   +     +L+  Y K  R +  +     +   GI  D   + 
Sbjct: 381 RLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYN 440

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
             L     Q   +E+ ++ E +++       +    L +   +G   KEA E+F    + 
Sbjct: 441 ALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQA 500

Query: 396 VKKA---YCNCLID-LCVNLNLLENACKLLE 422
             KA     + LID LC N  L+E++  LL+
Sbjct: 501 GLKADVVLYSALIDALCKN-GLVESSVTLLD 530



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 1/220 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +++AF +      +    +   +ST+I  Y   G  D  LN++ EMK +GV  + +
Sbjct: 343 KGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRV 402

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN LL    +  R  Q   + KEM + G+  +  TY +LL  YG+    ++   V+ EM
Sbjct: 403 SYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEM 462

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K   +  ++  Y+TL+ + +  G   EA E+F + K +   + D   +S++I      G 
Sbjct: 463 KRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQA-GLKADVVLYSALIDALCKNGL 521

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           V  +  + +EM + G  PN+    S+I  +G++     VV
Sbjct: 522 VESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVV 561



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  E A  L+    ++    D   ++TL+      G  D    +  EM    + PN+
Sbjct: 307 SRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNV 366

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY+ ++D   +  R      ++ EM   G+  +  +Y +LL  Y +    E  L V +E
Sbjct: 367 VTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKE 426

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+  G++  V  YN LLA        DE   +FE+MK      P+  T+S++I + S  G
Sbjct: 427 MENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGR-VSPNLLTYSTLIDVYSKGG 485

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              EA  +F E  +AG + ++ + ++LI    K    +  V  L+ + + GI P+
Sbjct: 486 LYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPN 540



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 4/214 (1%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYE--EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           P+ ++ L++  G  G+    +  +E    +  G        + ++ T+GR  +    K +
Sbjct: 153 PDDYTFLLRELGNRGDSAKAVRCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAKAV 212

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +      G       +++L+ AYGR+ Y  + + V+  MK  G+  ++  YN ++  C  
Sbjct: 213 FDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGK 272

Query: 239 VGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            G    +  EIF+ M S+   QPD  TF+S++ +CS  G    A  +F+ M++ G + ++
Sbjct: 273 GGVEFKKVVEIFDGMLSN-GVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDI 331

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           F   +L+    K  + D     ++ +P   I P+
Sbjct: 332 FTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPN 365


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 195/444 (43%), Gaps = 16/444 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  ++ A  ++++ +      D   + TLI ++  AG  D  +++Y+ M+  G+ P+  
Sbjct: 406 RANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTF 465

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++ EM   G +PN  T+  ++  + +AR  E  L +YR+M
Sbjct: 466 TYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDM 525

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G Q     Y+ ++ +    G+ +EA  +F +M+  +N  PD   +  ++ +    G 
Sbjct: 526 QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQ-RKNWVPDEPVYGLLVDLWGKAGN 584

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   +  ML+AG  PN+    SL+  + +  R  +    L  +  LG+ P  +    
Sbjct: 585 VDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTL 644

Query: 338 LLNVMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELF 389
           LL+  T      ++G   + +  S    G+   + L +    G       D      +  
Sbjct: 645 LLSCCTDARSNFDMGFCGQLMAVS----GHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFM 700

Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
           +S  ++ K+   + ++D      L E A  + E+     VY D ++ +S + W ++L  +
Sbjct: 701 HSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVM 760

Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELN 506
           S G A+ AL   +    K +    + P  + I TG G+         +    E  L   N
Sbjct: 761 SEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFN 820

Query: 507 APFHDSPDKVGWFLTTEAAAKSWL 530
            PF       G F+ +    K+WL
Sbjct: 821 FPFFTENGNSGCFVGSGEPLKNWL 844



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 230 NTLLAMCADVGYTDEAFEI--FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +T   M  ++G   +  EI    D    + C+P++ T++ +I        + EA  +FN+
Sbjct: 360 HTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQ 419

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           M EAG EP+     +LI  + KA   D  +    R+ E G++PD      ++N +
Sbjct: 420 MQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCL 474



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A   F  +K     + D  T+++M+       +  E   + +EM+  G +PN      LI
Sbjct: 342 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLI 401

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             YG+A    + +   N++ E G  P DR   C L
Sbjct: 402 HSYGRANYLKEAMNVFNQMQEAGCEP-DRVTYCTL 435


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 130/248 (52%), Gaps = 1/248 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN  +A   Y+  R +    +   ++TLI +YG  G ++  + V   MK  GV+P + 
Sbjct: 257 KCGNCPLALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLR 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+       +P +   +YK M D G SPN  TY +L+ AYG+A   +  + V++EM
Sbjct: 317 TYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEM 376

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG + SV  Y++L++ C   G  + A E+F +M + E C P++ T++S+IT C+   +
Sbjct: 377 VHKGCERSVITYSSLISACEKAGQWELALELFNEM-AGEGCIPNTVTYNSLITACAQGAQ 435

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             +A  +F +M + G  P++   T+LI  Y K  +    + A  ++      PD      
Sbjct: 436 WEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNA 495

Query: 338 LLNVMTQT 345
           +++ + +T
Sbjct: 496 IIDTLWET 503



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 108/231 (46%), Gaps = 3/231 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQVKTI 178
           D   ++ +I +     + D  +++ +EM+   ++ N+ TY  L++   +    P  + T 
Sbjct: 209 DVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDT- 267

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y  M  +G  PN  TY +L+  YG+    E  + V   MK +G++  +  YNTL+  C  
Sbjct: 268 YNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNM 327

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA  +++ M   E   P++ T++++I+     G++ +   +F EM+  G E ++ 
Sbjct: 328 CGQPREAMAVYKRML-DEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVI 386

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             +SLI    KA + +  +   N +   G  P+      L+    Q  + E
Sbjct: 387 TYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWE 437



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 67/147 (45%), Gaps = 3/147 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +S+LI     AG ++  L ++ EM   G  PN +TYN+L+    +  +  +   ++++M 
Sbjct: 388 YSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQ 447

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT- 242
             G +P+  T+ +L+ +Y +       L  Y +M+ +  +    ++N ++    + G   
Sbjct: 448 KGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETGVIW 507

Query: 243 --DEAFEIFEDMKSSENCQPDSWTFSS 267
              +A  +F+      + +   W  S 
Sbjct: 508 AQRKALALFQQAVEDGHFKQQRWDTSG 534


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 1/256 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G  E A  +Y +   +  ++D  A++ LI+ +G +G  D  + ++ EMK  G +P+  T
Sbjct: 78  SGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYT 137

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L++ +G+A R  + ++ +  M + GL+PN  TY  L+ A+ +    +  L ++ EMK
Sbjct: 138 YGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMK 197

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            +G Q SV  YN LL      G    A ++F  M + + C PDS+T+S+++      G+V
Sbjct: 198 RRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM-TGDGCSPDSYTYSTLVNGLGKSGRV 256

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            EA  +F EM++ G   +L    SL+    KA   D V + +  +   G  PD      +
Sbjct: 257 EEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTI 316

Query: 339 LNVMTQTPKEELGKLV 354
           ++ + +  K +  + V
Sbjct: 317 MDALGKANKPDAAREV 332



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 1/253 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G VE A  ++    +    +D   +++L+     AGN D    + +EM   G  P+  
Sbjct: 252 KSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAF 311

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           ++N ++D +G+A +P   + ++  M ++G  P+  +Y  L+ +Y R         +  EM
Sbjct: 312 SFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEM 371

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G       YN+L+   A  G  DEAF + E+M+++  C+PD  T++ ++ +   RG+
Sbjct: 372 VEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETA-GCRPDVVTYNRLMDMLGKRGE 430

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
              A  +F +M + G EP+       I       R D+ +     +  +G   D      
Sbjct: 431 NQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRI 490

Query: 338 LLNVMTQTPKEEL 350
           L+    +    EL
Sbjct: 491 LIRAAHRAGDTEL 503



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++MA GL+   +   ++     ++ L+    +AG       ++ +M   G  P+  
Sbjct: 182 KVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSY 241

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++ +G++ R  +   +++EM D G++ +   Y SLL    +A   +    + +EM
Sbjct: 242 TYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM 301

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG       +NT++         D A E+F  M  S  C+PD  +++ +I   +  G 
Sbjct: 302 SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVES-GCKPDLISYNILIDSYARFGD 360

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++A  M  EM+EAGF P      SLI       + D+    L  +   G  PD
Sbjct: 361 AAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPD 414



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG V  A  L+ +   +    D   +STL+   G +G  +    V+ EM   GV  +++ 
Sbjct: 218 AGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVN 277

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN+LL T+ +A    +V  + KEM+  G  P+  ++ +++ A G+A   +    V+  M 
Sbjct: 278 YNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMV 337

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E G +  +  YN L+   A  G   +A ++ E+M  +    P++ T++S+I   +  G+V
Sbjct: 338 ESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEA-GFIPETKTYNSLIHWLATDGQV 396

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EA A+  EM  AG  P++     L+   GK        R   ++ + G+ PD
Sbjct: 397 DEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPD 449



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 124/281 (44%), Gaps = 36/281 (12%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  R+G ++ A  ++   + +    D   +  L+   G AG      + ++ M   G+ P
Sbjct: 109 YFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTP 168

Query: 155 NMITY-----------------------------------NNLLDTMGRAKRPWQVKTIY 179
           N+ TY                                   N LLD +  A R    + ++
Sbjct: 169 NIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLF 228

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +MT +G SP+  TY++L+   G++   E+   V+REM ++G+ + +  YN+LLA  A  
Sbjct: 229 HKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKA 288

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D  +++ ++M S +   PD+++F++++       K   A  +F  M+E+G +P+L  
Sbjct: 289 GNMDRVWKLMKEM-SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLIS 347

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              LI  Y +        + L  + E G  P+ +    L++
Sbjct: 348 YNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIH 388



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 135 GNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192
           G  D    + +EM A G  ++PN  T   L+   GR  +      ++ +      SP  +
Sbjct: 9   GILDPLETLLKEMVAEGRPLRPN--TLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVH 66

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            +  L+     +   E    VY+++ +KG QL    YN L+      G  D A E+F +M
Sbjct: 67  AFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREM 126

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           K  +  +PD +T+  ++      G+V EA + F+ MLE G  PN+     L+  + K  +
Sbjct: 127 K-IKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQ 185

Query: 313 TDDVVRALNRLPELGITP 330
            D  +     +   G  P
Sbjct: 186 LDMALGLFAEMKRRGFQP 203


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 188/419 (44%), Gaps = 10/419 (2%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++ D + F++L+ +Y  AGNFD    VY+ +   G++P+  TYN L+    R+ RP +  
Sbjct: 916  FKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGF 975

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            T+  EM   GL+P   +Y SLL A  +A   E    ++ EM+ K  QL+ ++Y+ ++ + 
Sbjct: 976  TLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIY 1035

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             + G   +A  +   MK  +  +P   T   ++T     G+  EAE + N +  +  E +
Sbjct: 1036 RNAGNHSKAENLLAVMK-EDGIEPTIATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVS 1094

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
                +++   Y K    D  ++ L  +   G+ PD +   C +   +   +     L   
Sbjct: 1095 TLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAIL--- 1151

Query: 357  VEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL--FNSISKDVKKAYCNCLIDLCVNLNLL 414
            + KS    G+ + + L  +       + A  L    ++       + N + DL       
Sbjct: 1152 LLKSLQDCGFDLPIRLLTERTPSLLSEIANYLEELEALEDSAALNFVNAVEDLLWAFECR 1211

Query: 415  ENACKLLELGLTLEVYTDIQSR-SPTQWSLHLKSLSLGAALTALHIWINDLSKA-LESGE 472
              A ++ +L +   +Y D   R +   W    + LS GAAL  L +W++ +  A L+   
Sbjct: 1212 ATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVGLTLWLDHMQDASLQGSP 1271

Query: 473  EFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 531
            E P  + + TG G  +Y+   L     ++L E+ +PF     + G F+    + K WL+
Sbjct: 1272 ESPKSVVLVTGEG--EYNMVSLRKTIRAYLLEMGSPFLPCRARSGRFVVKAYSLKMWLK 1328



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 1/246 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L    R    R D   ++TLI     + N +  + V+EEM A   +P++ TYN ++
Sbjct: 276 VALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMV 335

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR  +  + + ++ E+ + G  P+  TY SLL A+ +    +       E+ + G +
Sbjct: 336 SVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFK 395

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
            +   YNT++ M   +G  D A  ++++M++   C PD+ T++ MI       K++EA  
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAV-GCTPDAVTYTVMIDSLGKMDKIAEAGK 454

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           +  +M +AG +P L   ++LI  Y K  R  D  +  + +   G+ PD      +L+V  
Sbjct: 455 VLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFA 514

Query: 344 QTPKEE 349
           ++ + E
Sbjct: 515 RSGETE 520



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++T+I +YG  G  D  + +Y+EM+A+G  P+ +TY  ++D++G+  +  +   + ++M 
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMA 460

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D GL P    +++L+ AY +     D    +  M   G++     Y  +L + A  G T+
Sbjct: 461 DAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETE 520

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +   ++  M  ++N +PD   +  ++   +   K  E E +  +M E   + +L V++++
Sbjct: 521 KMLRLYRTMM-NDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDM-ELLCQMSLGVISTI 578

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECV 357
           +    KA+      + L +    G  PD +    ++N    T K E G  L+EC+
Sbjct: 579 LI---KARCVSQGGKLLKKACLQGYKPDAKSLWSIMNAYVMTEKHEEGLSLLECI 630



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 132/281 (46%), Gaps = 3/281 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +++ N+E A  +++     + R D   ++ ++ ++G  G  +    ++ E+   G  P+ 
Sbjct: 304 SQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDA 363

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN+LL    +     +V+   +E+   G   N  TY +++  YG+    +  + +Y E
Sbjct: 364 VTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDE 423

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+  G       Y  ++     +    EA ++ EDM  +   +P    FS++I   +  G
Sbjct: 424 MRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADA-GLKPTLVAFSALICAYAKGG 482

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           + ++AE  F+ M+ +G +P+      ++  + ++  T+ ++R    +      PDD    
Sbjct: 483 RRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQ 542

Query: 337 CLLNVMTQTPK-EELGKLVECVE-KSNSKLGYVVKLLLEEQ 375
            LL  + +  K EE+ ++++ +E      LG +  +L++ +
Sbjct: 543 VLLVALAKEDKCEEIEEIIQDMELLCQMSLGVISTILIKAR 583



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 110/252 (43%), Gaps = 42/252 (16%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R  P+  + +++  G + ++   L+ +E + A    P       +L  +GRA++    + 
Sbjct: 152 RATPDEVAFVVRAVGES-SWRRALDAFEWL-ARSTAPASRAVAVVLGVLGRARQDSIAEE 209

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGR------ARYGEDT--------------------- 210
           ++      G +     + +++  Y R      AR   DT                     
Sbjct: 210 VFLRFAGEGATVQ--VFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARS 267

Query: 211 ----------LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
                     L +  E+++ G++  V  YNTL++ C+     ++A  +FE+M +SE C+P
Sbjct: 268 KSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASE-CRP 326

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D WT+++M+++    GK  EAE +F E++E GF P+     SL+  + K    D V    
Sbjct: 327 DLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTC 386

Query: 321 NRLPELGITPDD 332
             L + G   ++
Sbjct: 387 EELVKAGFKKNE 398



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 1/193 (0%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N L+     +    + + ++  M   G  P  ++   ++RA       ++   V  E++
Sbjct: 783 WNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQ 842

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           +   ++S +    +L   A  G   E  +I+  MK++    P+   + SM ++     + 
Sbjct: 843 DMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAA-GYLPNMHLYRSMTSLLCHHNRF 901

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            + E M  EM  AGF+P+L +  SL+  Y  A   D   +    + E G+ PD+     L
Sbjct: 902 RDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTL 961

Query: 339 LNVMTQTPKEELG 351
           + +  ++ + E G
Sbjct: 962 IVMYCRSLRPEEG 974


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 132/248 (53%), Gaps = 1/248 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G + +A  +Y+  R      +   ++TL+ +YG  G ++  ++V + MK  GV+P + 
Sbjct: 115 KCGKLPLALEIYNNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLR 174

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+       +P +   +Y+ +  +G +PN  TY +L+ AYG+       L VY+EM
Sbjct: 175 TYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEM 234

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             + M+ SV  Y++L++ C   G  + A  IF +M+  +NC P++ T++S++T C+  G+
Sbjct: 235 LRQNMERSVITYSSLISACEKAGQWETALRIFNEMQ-QDNCVPNTVTYNSLVTACAQGGQ 293

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             +A  +F +M   G  P++   T+LI  Y +  +    ++A  ++   G  PD      
Sbjct: 294 WEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNA 353

Query: 338 LLNVMTQT 345
           +++ + +T
Sbjct: 354 IIDTLWET 361


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 192/443 (43%), Gaps = 19/443 (4%)

Query: 96   DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
            + R  +VE+     +RA  E    D    +TL+ +Y   GNFD  + VY  +   G++PN
Sbjct: 742  NKRYRDVELMVVEMERAGFEP---DLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPN 798

Query: 156  MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
              TYN L+    R  RP +  T+  EM   GL+P   +Y SLL A G+A+  E    ++ 
Sbjct: 799  EDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFE 858

Query: 216  EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            E++ KG +L+ +LY+ L+ +  D     +A ++   MK  +  +P   T   ++T     
Sbjct: 859  EIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMK-EDGIEPTIATMHILMTSYGTA 917

Query: 276  GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            G   EAE + N +  +  E +    +++   Y K    +  +  L  +   G+ PD +  
Sbjct: 918  GHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLEMKADGVKPDHQVW 977

Query: 336  GCLLNVMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390
             C +   +   +       L  L +C      +    ++LL E             E  +
Sbjct: 978  TCFIRAASLCERTADAILLLNSLRDC------EFDLPIRLLTERTSSLLTEVSNFLEELD 1031

Query: 391  SISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLS 449
            ++       + N L DL         A  + +L +   +Y  ++       W    + LS
Sbjct: 1032 ALEDSAALNFVNALEDLLWAFECRATASYVFQLAVDKSIYRHNVFRVVEKDWGADFRKLS 1091

Query: 450  LGAALTALHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAP 508
             GAALTAL +W++ +  A L+   E P  + + TG G  +Y+   L     ++L E+ +P
Sbjct: 1092 AGAALTALTLWLDQMQDASLQGSPESPKSIVLVTGEG--EYNMVSLRKTIRAYLLEMGSP 1149

Query: 509  FHDSPDKVGWFLTTEAAAKSWLE 531
            F     + G F+    + K WL+
Sbjct: 1150 FLPCKTRSGRFVAKSYSLKMWLK 1172



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 120/241 (49%), Gaps = 1/241 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF L    R    R D   ++TLI       N D  + V+EEM A   +P++ TYN ++ 
Sbjct: 119 AFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVS 178

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             GR  +    + +++E+ + G  P+  TY SLL A+ +    +    V  E+   G + 
Sbjct: 179 VHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKK 238

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               YNT++ M   +G  D A  ++++M++   C PD+ T++ +I       ++S+A  +
Sbjct: 239 DGITYNTMIHMYGKMGRLDLALGLYDEMRAL-GCTPDAVTYTVLIDSLGKMDRISDAGKV 297

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             EM +AG +P L   ++LI  Y K  R ++ VR  + +   G+ PD      +L+++ +
Sbjct: 298 LEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIAR 357

Query: 345 T 345
           +
Sbjct: 358 S 358



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 115/235 (48%), Gaps = 5/235 (2%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++ D   ++T+I +YG  G  D  L +Y+EM+A+G  P+ +TY  L+D++G+  R     
Sbjct: 236 FKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAG 295

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM D GL P   T+++L+ AY +    E+ +  +  M   G++     Y  +L + 
Sbjct: 296 KVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDII 355

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           A  G   +   +++ M  ++  +PD+  +  M+   +   +  E EA+  +M E   + N
Sbjct: 356 ARSGDMRKLMALYQTMM-NDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDM-EVVCQMN 413

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
             +++S++    KA+      + L +    G  PD +    +L+    T K E G
Sbjct: 414 PQLVSSILI---KAECISQGAKLLKKACLQGHEPDSKSLLSILDAYETTGKHEEG 465



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 1/223 (0%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           S   R G  + A  ++     + ++ D   +++L+  +   G+ D    V EE+   G K
Sbjct: 178 SVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFK 237

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
            + ITYN ++   G+  R      +Y EM   G +P+  TY  L+ + G+     D   V
Sbjct: 238 KDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKV 297

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             EM + G++ ++  ++ L+   A  G  +EA   F  M +S   +PD   +  M+ I +
Sbjct: 298 LEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVAS-GVKPDRLAYLVMLDIIA 356

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             G + +  A++  M+  G+ P+  +   ++    K    D++
Sbjct: 357 RSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEI 399



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +++A GLYD  R      D   ++ LI   G          V EEM   G+KP ++
Sbjct: 252 KMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLV 311

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T++ L+    +  R  +    +  M  +G+ P+   Y  +L    R+      +++Y+ M
Sbjct: 312 TFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTM 371

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G +    LY  +LA  A     DE   + +DM+    CQ +    SS++    C   
Sbjct: 372 MNDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVV--CQMNPQLVSSILIKAEC--- 426

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           +S+   +  +    G EP+   L S++  Y
Sbjct: 427 ISQGAKLLKKACLQGHEPDSKSLLSILDAY 456



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 102/259 (39%), Gaps = 36/259 (13%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D N +  LI     A  F     V+ +M+ IG++P+   Y +++    +   P     + 
Sbjct: 518 DCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLM 577

Query: 180 KEMTDNGLSPN-WNTYASLLRAYGRAR-----------------------------YGED 209
            E   +G+S N  ++  +++ AYG+ +                             Y E 
Sbjct: 578 DEAVQSGISLNILSSRVTMIEAYGKIKLWQHAENFVKGLKQEPSIDRRIWNALIHAYAES 637

Query: 210 TL-----SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
            L     +V+  M EKG   ++   N ++      G  DE + I ++++     +    T
Sbjct: 638 GLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDM-GFKISKST 696

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
              M+   +  G + E   ++N M EAG+ PN+ +  S+I    + +R  DV   +  + 
Sbjct: 697 VILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEME 756

Query: 325 ELGITPDDRFCGCLLNVMT 343
             G  PD      LL + T
Sbjct: 757 RAGFEPDLTILNTLLLMYT 775


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 161/330 (48%), Gaps = 24/330 (7%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L    R    R D   ++TLI       N D  + V+EEM A   +P++ TYN ++
Sbjct: 276 VALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMV 335

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR  +  + + ++KE+ + G  P+  TY SLL A+ +    E    V  E+ + G +
Sbjct: 336 SVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFR 395

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M   +G  D A  ++++M++   C PD+ T++ ++       ++SEA  
Sbjct: 396 KDGITYNTMIHMYGKMGRLDLALGLYDEMRAI-GCTPDAVTYTVLVDSLGKMDRISEAGK 454

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           +  EM +AG +P L   ++LI  Y K+ R DD  R  +R+ E G+ PD      +L+V  
Sbjct: 455 VLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFA 514

Query: 344 QTPKEELGKLVECVEKSNSKLGY-----VVKLLL-------EEQDIEGDFKK-EATELFN 390
           ++  +E  KL+  + ++  K GY     + ++LL       E  +IEG  +  EA    N
Sbjct: 515 RS--DETRKLM-VLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMN 571

Query: 391 S--ISKDVKKAYCNCLIDLCVNLNLLENAC 418
              IS  + KA C     +    +LL+ AC
Sbjct: 572 PLVISSILIKAEC-----ISQGASLLKRAC 596



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 187/422 (44%), Gaps = 16/422 (3%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++ D    +TL+ +Y   GNFD  + VY  +   G++P+  TYN L+    R  RP +  
Sbjct: 918  FKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGF 977

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            T+  EM   GL+P   +Y  LL A G+A+  E    ++ EM+ KG +L+ ++Y+ ++ + 
Sbjct: 978  TLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIY 1037

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             +     +A  +   MK  +  +P   T   ++T     G   EAE + N +  +  E +
Sbjct: 1038 RNARNHSKAEHLLSAMK-EDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEIS 1096

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQTPKEELGKL 353
                ++++  Y    R  D    + +L E+   G+ PD +     +   +   + +   L
Sbjct: 1097 TLPYSTVLDAY---LRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAIL 1153

Query: 354  VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT--ELFNSISKDVKKAYCNCLIDLCVNL 411
               + KS    G+ + + L  +     F +  +  E   ++       + N L DL    
Sbjct: 1154 ---LLKSLQDCGFDLPIRLLTERTSSLFTEVDSFLEKLGTLEDSASLNFVNALEDLLWAF 1210

Query: 412  NLLENACKLLELGLTLEVY-TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA-LE 469
                 A  + +L +   +Y  +I       W   L+ LS GAAL AL +W++ +  A L+
Sbjct: 1211 ERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLRKLSAGAALVALTLWLDQMQDASLQ 1270

Query: 470  SGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSW 529
               E P  + + TG G  +Y+   L     ++L E+ +PF     + G F+    + K W
Sbjct: 1271 GAPESPKSIVLVTGEG--EYNMVSLRKTIRAYLLEMGSPFLPCRSRSGRFVVKAYSLKMW 1328

Query: 530  LE 531
            L+
Sbjct: 1329 LK 1330



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 11/291 (3%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           HG+ G + ++ +       +  +    +Y++      + G+VE    + +      +R D
Sbjct: 338 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 397

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              ++T+I +YG  G  D  L +Y+EM+AIG  P+ +TY  L+D++G+  R  +   + +
Sbjct: 398 GITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLE 457

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM D GL P   T+++L+ AY ++   +D    +  M E G++     Y  +L + A   
Sbjct: 458 EMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD 517

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            T +   ++  M   +  +PD   +  ++   +   +  E E +  +M EA FE N  V+
Sbjct: 518 ETRKLMVLYRAM-IKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDM-EAVFEMNPLVI 575

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
           +S++    KA+        L R    G  PD +    +L+   +  K E G
Sbjct: 576 SSILI---KAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKG 623



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 1/177 (0%)

Query: 135  GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
            G  D    V +E++ + +K +  T   +L+   +A   ++V  IY  M   G  PN + Y
Sbjct: 831  GRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLY 890

Query: 195  ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
              ++      +   D   +  EM+  G +  + + NTLL M    G  D   E++  +  
Sbjct: 891  RIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILE 950

Query: 255  SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
            +   +PD  T++++I + S   +  E   +  EM + G  P L     L+   GKA+
Sbjct: 951  A-GLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAK 1006



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 37/195 (18%)

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI-- 248
           WN   +L+ AY  +   E   +++  M +KG   +V   N ++      G  DE + +  
Sbjct: 785 WN---ALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQ 841

Query: 249 ---------------------------FEDMKSSENCQ-----PDSWTFSSMITICSCRG 276
                                      FE MK     +     P+   +  MI++     
Sbjct: 842 ELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNK 901

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  + E M  EM  AGF+P+L VL +L+  Y      D  +   + + E G+ PD+    
Sbjct: 902 RFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYN 961

Query: 337 CLLNVMTQTPKEELG 351
            L+ + ++  + E G
Sbjct: 962 TLIVMYSRNFRPEEG 976


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 161/330 (48%), Gaps = 24/330 (7%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L    R    R D   ++TLI       N D  + V+EEM A   +P++ TYN ++
Sbjct: 116 VALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMV 175

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR  +  + + ++KE+ + G  P+  TY SLL A+ +    E    V  E+ + G +
Sbjct: 176 SVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFR 235

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M   +G  D A  ++++M++   C PD+ T++ ++       ++SEA  
Sbjct: 236 KDGITYNTMIHMYGKMGRLDLALGLYDEMRAI-GCTPDAVTYTVLVDSLGKMDRISEAGK 294

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           +  EM +AG +P L   ++LI  Y K+ R DD  R  +R+ E G+ PD      +L+V  
Sbjct: 295 VLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFA 354

Query: 344 QTPKEELGKLVECVEKSNSKLGY-----VVKLLL-------EEQDIEGDFKK-EATELFN 390
           ++  +E  KL+  + ++  K GY     + ++LL       E  +IEG  +  EA    N
Sbjct: 355 RS--DETRKLM-VLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMN 411

Query: 391 S--ISKDVKKAYCNCLIDLCVNLNLLENAC 418
              IS  + KA C     +    +LL+ AC
Sbjct: 412 PLVISSILIKAEC-----ISQGASLLKRAC 436



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 187/422 (44%), Gaps = 16/422 (3%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++ D    +TL+ +Y   GNFD  + VY  +   G++P+  TYN L+    R  RP +  
Sbjct: 758  FKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGF 817

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            T+  EM   GL+P   +Y  LL A G+A+  E    ++ EM+ KG +L+ ++Y+ ++ + 
Sbjct: 818  TLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIY 877

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             +     +A  +   MK  +  +P   T   ++T     G   EAE + N +  +  E +
Sbjct: 878  RNARNHSKAEHLLSAMK-EDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEIS 936

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQTPKEELGKL 353
                ++++  Y    R  D    + +L E+   G+ PD +     +   +   + +   L
Sbjct: 937  TLPYSTVLDAY---LRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAIL 993

Query: 354  VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT--ELFNSISKDVKKAYCNCLIDLCVNL 411
               + KS    G+ + + L  +     F +  +  E   ++       + N L DL    
Sbjct: 994  ---LLKSLQDCGFDLPIRLLTERTSSLFTEVDSFLEKLGTLEDSASLNFVNALEDLLWAF 1050

Query: 412  NLLENACKLLELGLTLEVY-TDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA-LE 469
                 A  + +L +   +Y  +I       W   L+ LS GAAL AL +W++ +  A L+
Sbjct: 1051 ERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLRKLSAGAALVALTLWLDQMQDASLQ 1110

Query: 470  SGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSW 529
               E P  + + TG G  +Y+   L     ++L E+ +PF     + G F+    + K W
Sbjct: 1111 GAPESPKSIVLVTGEG--EYNMVSLRKTIRAYLLEMGSPFLPCRSRSGRFVVKAYSLKMW 1168

Query: 530  LE 531
            L+
Sbjct: 1169 LK 1170



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 11/291 (3%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           HG+ G + ++ +       +  +    +Y++      + G+VE    + +      +R D
Sbjct: 178 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 237

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              ++T+I +YG  G  D  L +Y+EM+AIG  P+ +TY  L+D++G+  R  +   + +
Sbjct: 238 GITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLE 297

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM D GL P   T+++L+ AY ++   +D    +  M E G++     Y  +L + A   
Sbjct: 298 EMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD 357

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            T +   ++  M   +  +PD   +  ++   +   +  E E +  +M EA FE N  V+
Sbjct: 358 ETRKLMVLYRAM-IKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDM-EAVFEMNPLVI 415

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
           +S++    KA+        L R    G  PD +    +L+   +  K E G
Sbjct: 416 SSILI---KAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKG 463



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 38/180 (21%)

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL-------------------- 228
           P    + +++  Y R+   +D   +   M+++ ++  +                      
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL 118

Query: 229 -----------------YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
                            YNTL++ C+     D+A  +FE+M +SE C+PD WT+++M+++
Sbjct: 119 ELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASE-CRPDLWTYNAMVSV 177

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               GK  EAE MF E++E GF+P+     SL+  + K    + V R    L + G   D
Sbjct: 178 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 237



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 1/177 (0%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           G  D    V +E++ + +K +  T   +L+   +A   ++V  IY  M   G  PN + Y
Sbjct: 671 GRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLY 730

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
             ++      +   D   +  EM+  G +  + + NTLL M    G  D   E++  +  
Sbjct: 731 RIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILE 790

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           +   +PD  T++++I + S   +  E   +  EM + G  P L     L+   GKA+
Sbjct: 791 A-GLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAK 846



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 37/195 (18%)

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI-- 248
           WN   +L+ AY  +   E   +++  M +KG   +V   N ++      G  DE + +  
Sbjct: 625 WN---ALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQ 681

Query: 249 ---------------------------FEDMKSSENCQ-----PDSWTFSSMITICSCRG 276
                                      FE MK     +     P+   +  MI++     
Sbjct: 682 ELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNK 741

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  + E M  EM  AGF+P+L VL +L+  Y      D  +   + + E G+ PD+    
Sbjct: 742 RFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYN 801

Query: 337 CLLNVMTQTPKEELG 351
            L+ + ++  + E G
Sbjct: 802 TLIVMYSRNFRPEEG 816


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 197/444 (44%), Gaps = 16/444 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  ++++ +    + D   + TLI ++  AG  D  +++Y+ M+A G+ P+  
Sbjct: 411 RANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTF 470

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++ EM D G +PN  TY  ++  + +AR  +  L +YR+M
Sbjct: 471 TYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDM 530

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    GY +EA  +F +M+  +N  PD   +  ++ +    G 
Sbjct: 531 QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ-QKNWIPDEPVYGLLVDLWGKAGN 589

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   +  ML AG  PN+    SL+  + +  +  +    L  +  LG+ P  +    
Sbjct: 590 VEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTL 649

Query: 338 LLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEAT---ELF 389
           LL+  T    K ++G   + +  +    G+   + L +    G    + +  A    +L 
Sbjct: 650 LLSCCTDGRSKLDMGYCGQLMAST----GHPAHMFLLKMPAAGPNGENVRNHANNFLDLM 705

Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
           +S  ++ K+   + ++D        E A  + E+     V+ D ++ +S + W ++L  +
Sbjct: 706 HSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVM 765

Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELN 506
           S G A+TAL   +    + +      P  + I TG G+         +    E  L    
Sbjct: 766 SEGTAVTALSRTLAWFRRQMLVSGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFG 825

Query: 507 APFHDSPDKVGWFLTTEAAAKSWL 530
           +PF       G F+    +   WL
Sbjct: 826 SPFFTESGNSGCFVGCGESLNKWL 849



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 161/369 (43%), Gaps = 21/369 (5%)

Query: 83  KSPRASKLKEKSYDTRAGNVEMAFGLYDRAR----------NEKWRIDPNAFSTLIKLYG 132
           K P  + L  + Y      VE    +  R R          N   RID    + ++K   
Sbjct: 283 KGPPGTALTSRQYCNSGYIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMN 342

Query: 133 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192
             GN  G    Y   +  G K +  TY  ++  +GRAK+   +  +  EM  +G  PN  
Sbjct: 343 DYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTV 400

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           TY  L+ +YGRA Y  + ++V+ +M+E G +     Y TL+ + A  G+ D A ++++ M
Sbjct: 401 TYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRM 460

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           ++     PD++T+S +I      G +  A  +F EM++ G  PNL     ++  + KA+ 
Sbjct: 461 QAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN 519

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--ECVEKS----NSKLGY 366
               ++    +   G  PD      ++ V+      E  + V  E  +K+        G 
Sbjct: 520 YQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGL 579

Query: 367 VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426
           +V L  +  ++E  ++     L   +  +V    CN L+   + +N +  A +LL+  L 
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPT--CNSLLSTFLRVNKIAEAYELLQNMLA 637

Query: 427 LEVYTDIQS 435
           L +   +Q+
Sbjct: 638 LGLRPSLQT 646


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 135/265 (50%), Gaps = 2/265 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R     +A  L+D    EK+ +D  A++T++  Y  +G +   ++++++M+ IG+ P ++
Sbjct: 193 RESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLV 252

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +LD  G+  R W ++  +  EM   GL  +  T ++++ A GR    ++      E
Sbjct: 253 TYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAE 312

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K  G +    +YN++L +    G   EA  I ++M+ + NC PDS T++ +       G
Sbjct: 313 LKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDN-NCPPDSITYNELAATYVRAG 371

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + E  A+ + M   G  PN    T++I  YGKA R DD +R  +++ +LG  P+     
Sbjct: 372 FLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYN 431

Query: 337 CLLNVMTQTPKEELGKLVECVEKSN 361
            +L ++ +  + E    V C  K N
Sbjct: 432 SVLAMLGKKSRTEDVIKVLCEMKLN 456



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 8/245 (3%)

Query: 107 GLYDRARNEKWRIDPNAF-------STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+ D AR     +  N +       +++++++G AG +   L++ +EM+     P+ ITY
Sbjct: 301 GMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITY 360

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L  T  RA    +   +   MT  G+ PN  TY +++ AYG+A   +D L ++ +MK+
Sbjct: 361 NELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKD 420

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +V  YN++LAM      T++  ++  +MK +  C P+  T+++M+ +CS  GK +
Sbjct: 421 LGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLN-GCAPNRATWNTMLAVCSEEGKHN 479

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
               +  EM   GFEP+     +LI  Y +     D  +    + + G TP       LL
Sbjct: 480 YVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALL 539

Query: 340 NVMTQ 344
           N +  
Sbjct: 540 NALAH 544



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 7/219 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  +     +     D   ++ L   Y  AG  D  + V + M + GV PN I
Sbjct: 334 KAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAI 393

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D  G+A R      ++ +M D G +PN  TY S+L   G+    ED + V  EM
Sbjct: 394 TYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 453

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICSCR 275
           K  G   +   +NT+LA+C++ G  +   ++  +MK   NC  +PD  TF+++I+  +  
Sbjct: 454 KLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMK---NCGFEPDKDTFNTLISSYARC 510

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           G   ++  M+ EM+++GF P +    +L+     A R D
Sbjct: 511 GSEVDSAKMYGEMVKSGFTPCVTTYNALLNAL--AHRGD 547



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 1/173 (0%)

Query: 109 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           +D+ +   ++ D    ++++ ++     F     +   +   G++PN+ TYN L+D   R
Sbjct: 625 FDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVR 684

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
               W+ + + K + ++   P+  +Y ++++ + R    ++ + V  EM  KG+Q ++  
Sbjct: 685 EDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVT 744

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           YNT L+  A +   DEA E+   M    NC+P   T+  ++      GK  EA
Sbjct: 745 YNTFLSGYAGMELFDEANEVIRFM-IEHNCRPSELTYKILVDGYCKAGKHEEA 796



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 11/220 (5%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           +N  +  D + F+TLI  Y   G+      +Y EM   G  P + TYN LL+ +      
Sbjct: 489 KNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDW 548

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
              +++ ++M   G  PN  +Y+ LL  Y +A        V +E+ +  +  S  L  TL
Sbjct: 549 KAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTL 608

Query: 233 L---AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           +     C  +   + AF    D       +PD    +SM+++ S     S+A  M + + 
Sbjct: 609 VLSNHKCRHLRGMERAF----DQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIH 664

Query: 290 EAGFEPNLFVLTSLIQCYGKAQ---RTDDVVRAL-NRLPE 325
           E G +PNLF    L+  Y +     + ++V++ + N +PE
Sbjct: 665 ECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPE 704



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 7/228 (3%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++T++ +    G  +    V  EMK  G +P+  T+N L+ +  R         +
Sbjct: 460 PNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKM 519

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y EM  +G +P   TY +LL A       +   SV ++M+ KG + + T Y+ LL   + 
Sbjct: 520 YGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSK 579

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS--CRGKVSEAEAMFNEMLEAGFEPN 296
            G      E  E         P SW     + + +  CR  +   E  F+++ + G++P+
Sbjct: 580 AGNV-RGIEKVEKEIYDGQVFP-SWILLRTLVLSNHKCR-HLRGMERAFDQLQKYGYKPD 636

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           L V+ S++  + + +        L+ + E G+ P+     CL+++  +
Sbjct: 637 LVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVR 684



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/269 (18%), Positives = 109/269 (40%), Gaps = 36/269 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV---------------- 143
           G+ + A  +    + + ++ +  ++S L+  Y  AGN  G   V                
Sbjct: 546 GDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILL 605

Query: 144 -------------------YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
                              +++++  G KP+++  N++L    R K   + + +   + +
Sbjct: 606 RTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHE 665

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
            GL PN  TY  L+  Y R         V + ++    +  V  YNT++      G   E
Sbjct: 666 CGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQE 725

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +  +M +++  QP   T+++ ++  +      EA  +   M+E    P+      L+
Sbjct: 726 AIRVLSEM-TTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILV 784

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDR 333
             Y KA + ++ +  + ++ E+ I+ DD+
Sbjct: 785 DGYCKAGKHEEAMDFVTKIKEIDISFDDK 813


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 131/248 (52%), Gaps = 1/248 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G + +A  +Y+  R      +   ++TL+ +YG  G ++  ++V + MK  GV+P + 
Sbjct: 191 KCGKLPLALDIYNSMRAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLR 250

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+       +P +   +Y+ +  +G +PN  TY +L+ AYG+       L VY+EM
Sbjct: 251 TYNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEM 310

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             + M  SV  Y++L++ C   G  + A  IF +M+  + C P++ T++S++T C+  G+
Sbjct: 311 LRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQ-QDKCVPNTVTYNSLVTACAQGGQ 369

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             +A  +F +M   G  P++   T+LI  Y +  +    ++A +++   G  PD      
Sbjct: 370 WEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNA 429

Query: 338 LLNVMTQT 345
           +++ + +T
Sbjct: 430 IIDTLWET 437



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 162/394 (41%), Gaps = 42/394 (10%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           +V+ A  L    R+     + + ++ L+ +    G     L++Y  M+A+   PN++TYN
Sbjct: 159 DVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYN 218

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+D  G+  +  +   +   M   G+ P   TY +L+ A        + L+VY+ +   
Sbjct: 219 TLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSD 278

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   + T YN L++         +A E++++M   +N      T+SS+I+ C   G+   
Sbjct: 279 GFTPNSTTYNALISAYGKTTQLGKALEVYQEMLR-QNMDRSVITYSSLISACEKAGQWET 337

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A  +FNEM +    PN     SL+    +  + +       ++   G TPD         
Sbjct: 338 ALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPD--------- 388

Query: 341 VMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--K 398
           V+T T       L+   E+                   G ++K          +  K   
Sbjct: 389 VVTYT------ALISAYERG------------------GQWQKALQAFHKMCVQGCKPDA 424

Query: 399 AYCNCLIDLCVNLNLLENACKLLELGLTL----EVYTDIQSRSPTQWSLHLKSLSLGAAL 454
              N +ID      ++    K L+L +T       + +   R P +  ++L +++ G A+
Sbjct: 425 IVYNAIIDTLWETGIIWAQGKALQLFMTAVQQGHFHQEPLVRRPGRVEVNLHAMTAGVAM 484

Query: 455 TALHIWINDLSK-ALESG-EEFPPLLGINTGHGK 486
             L+ W+ +L + A+E G +  P  L I T  GK
Sbjct: 485 VCLYCWLLELRRIAIEKGPQHLPAALAIVTDMGK 518


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/444 (22%), Positives = 193/444 (43%), Gaps = 15/444 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  ++ A  ++ + +      D   + TLI ++  +G  D  + +YE+M+  G+ P+  
Sbjct: 426 RANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTF 485

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++  M D G  PN  TY  ++    +AR  E  L +YR+M
Sbjct: 486 TYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDM 545

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +     Y  ++ +    G+ +EA  IF +M+  +N  PD   +  ++ +    G 
Sbjct: 546 QQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQ-KKNWVPDEPVYGLLVDLWGKSGN 604

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   ++ ML+AG +PN+    SL+  + +  +  D  + L  +   G+ P  +    
Sbjct: 605 VQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTL 664

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELFN 390
           LL+  T     ++G   E ++ +    G+     L      G       D   +  +L +
Sbjct: 665 LLSCCTDAQTNDMGFCCELMQVT----GHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMH 720

Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLS 449
           S  ++ K+   + ++D      L E A  + E  +   VY D ++ +S   W ++L  +S
Sbjct: 721 SEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMS 780

Query: 450 LGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKH-KYSDKGLA-SVFESHLKELNA 507
            G A+TAL   +    + L      P  + I TG G+  K +   L     +  L   + 
Sbjct: 781 DGTAVTALSRTLAWFRQQLLLSGVGPSRIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSF 840

Query: 508 PFHDSPDKVGWFLTTEAAAKSWLE 531
           PF       G F+        WL 
Sbjct: 841 PFFTENGNSGCFVGCGEPLSRWLH 864



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A   F  +K     + D  T+++MI +     + +    + ++M++ G +PN+     +I
Sbjct: 362 ALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRII 421

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             YG+A    D V    ++ E G  P DR   C L
Sbjct: 422 HSYGRANYLQDAVNVFKQMQEAGCEP-DRVTYCTL 455



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 44/92 (47%)

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           D    + CQP+  T++ +I        + +A  +F +M EAG EP+     +LI  + K+
Sbjct: 403 DQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKS 462

Query: 311 QRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
              D  +    ++ + G+TPD      ++N +
Sbjct: 463 GFLDVAMGMYEKMQDAGLTPDTFTYSVMINCL 494


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/444 (22%), Positives = 193/444 (43%), Gaps = 15/444 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  ++ A  ++ + +      D   + TLI ++  +G  D  + +YE+M+  G+ P+  
Sbjct: 426 RANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTF 485

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++  M D G  PN  TY  ++    +AR  E  L +YR+M
Sbjct: 486 TYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDM 545

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +     Y  ++ +    G+ +EA  IF +M+  +N  PD   +  ++ +    G 
Sbjct: 546 QQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQ-KKNWVPDEPVYGLLVDLWGKSGN 604

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   ++ ML+AG +PN+    SL+  + +  +  D  + L  +   G+ P  +    
Sbjct: 605 VQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTL 664

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELFN 390
           LL+  T     ++G   E ++ +    G+     L      G       D   +  +L +
Sbjct: 665 LLSCCTDAQTNDMGFCCELMQVT----GHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMH 720

Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLS 449
           S  ++ K+   + ++D      L E A  + E  +   VY D ++ +S   W ++L  +S
Sbjct: 721 SEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMS 780

Query: 450 LGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKH-KYSDKGLA-SVFESHLKELNA 507
            G A+TAL   +    + L      P  + I TG G+  K +   L     +  L   + 
Sbjct: 781 DGTAVTALSRTLAWFRQQLLLSGVGPSRIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSF 840

Query: 508 PFHDSPDKVGWFLTTEAAAKSWLE 531
           PF       G F+        WL 
Sbjct: 841 PFFTENGNSGCFVGCGEPLSRWLH 864



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A   F  +K     + D  T+++MI +     + +    + ++M++ G +PN+     +I
Sbjct: 362 ALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRII 421

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             YG+A    D V    ++ E G  P DR   C L
Sbjct: 422 HSYGRANYLQDAVNVFKQMQEAGCEP-DRVTYCTL 455



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 44/92 (47%)

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           D    + CQP+  T++ +I        + +A  +F +M EAG EP+     +LI  + K+
Sbjct: 403 DQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKS 462

Query: 311 QRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
              D  +    ++ + G+TPD      ++N +
Sbjct: 463 GFLDVAMGMYEKMQDAGLTPDTFTYSVMINCL 494


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 207/472 (43%), Gaps = 40/472 (8%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +R GN+E A  +Y + R   +      F  L+ LY           + +++K  G++ +M
Sbjct: 751  SRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDM 810

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
              YN+++    +     +   ++K M + G SP+  T+ +L+  Y R +  ++  ++ RE
Sbjct: 811  DIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLRE 870

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            M + G   +++ Y TL++    +   ++A  +F+ +  +  C+PD+  ++ MI +    G
Sbjct: 871  MIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAET-GCKPDATAYNVMINVYRKAG 929

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +  + E +  +M   GFEP+L  +  L+  YGK   T      L  LPE+G++PD     
Sbjct: 930  EHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYT 989

Query: 337  CLLNVMTQTPKEELGKLV-------ECVEKSNSKLGYVV-----------KLLLEEQDIE 378
             ++N      K+ L  ++        CV  ++  +   V            L+L +   E
Sbjct: 990  SIINSHLNN-KDYLSAVIWLRKMTDACVRPTHVTITCFVGAASVCERSSHALMLLKALSE 1048

Query: 379  GDFK---KEATELFNSISKDVKKAY--------------CNCLIDLCVNLNLLENACKLL 421
              F    +  TE    + +D++  +               N L+DL         A  + 
Sbjct: 1049 AGFSLPLRLMTECTPKVVQDMQDIFDQLQESGPEACQGVVNVLMDLLWAFRQCATAALVF 1108

Query: 422  ELGLTLEVYTDIQSRSPTQ-WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGI 480
             + +   +YT + +R   + W    + LS GAAL AL +W++ +  A   G   PP   I
Sbjct: 1109 AVAIESNIYTQVLARVKDRNWGADFRRLSPGAALVALILWLDQMQDASLQGSPVPP-KSI 1167

Query: 481  NTGHGKHKYSDKG-LASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 531
                G  K +++  +++  ++HL ++ +PF  S  + G  +    A   WL+
Sbjct: 1168 QIDIGSSKLNNQASVSNTIKTHLWQMGSPFLPSKTRAGVLVAKSHALCMWLK 1219



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 36/274 (13%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           + +A+S L+  Y   GNF+      + M A G++PN    N +L+  GRA +  ++   Y
Sbjct: 669 NTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFY 728

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + + + G++PN  T+  +  A+ R    E+  S+YR+M+E G   S+ ++  LLA+ +  
Sbjct: 729 QRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRE 788

Query: 240 GYTDEAFEIFEDMKSSE----------------------------------NCQPDSWTF 265
               +A E+ +D+K +                                    C PD+ TF
Sbjct: 789 TVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTF 848

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           +++I + S    V EA+A+  EM++ G  PN+   T+LI  YG+ Q  +D       + E
Sbjct: 849 NTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAE 908

Query: 326 LGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
            G  PD      ++NV  +  +    K+ E +E+
Sbjct: 909 TGCKPDATAYNVMINVYRKAGEHR--KIEEVIEQ 940



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 114/246 (46%), Gaps = 2/246 (0%)

Query: 97  TRAGNVE-MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           TR G  E +A  L         R D   ++TLI            + ++EEM+  G  P+
Sbjct: 160 TRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPD 219

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TYN ++   GRA R     +I++ M + G +P+  TY S+L A+ R    E+   +  
Sbjct: 220 IWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRG 279

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M++         YNT++ M    G   +A E++  MK    C PDS TF+ +I      
Sbjct: 280 MMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRC-PDSVTFTVLIDTLGKA 338

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G V+EA AMF +ML++   P L   +++I  Y KA    D     + +   G+ PD    
Sbjct: 339 GFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAY 398

Query: 336 GCLLNV 341
             +L+V
Sbjct: 399 SVMLDV 404



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 3/227 (1%)

Query: 120 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DP+   ++ +I +YG AG  +   +++  M+  G  P+ +TYN++L    R  R  +V+ 
Sbjct: 217 DPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVER 276

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           I   M D   S +  TY +++  YG+A        +Y +MKE+G       +  L+    
Sbjct: 277 IRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLG 336

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G+ +EA  +FEDM  S+  +P    FS+MI   +     S+AE  ++ ML AG  P+L
Sbjct: 337 KAGFVNEAAAMFEDMLKSQ-VRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDL 395

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
              + ++  + KA+  +  +     +   G+ P+      ++ V  Q
Sbjct: 396 LAYSVMLDVFFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQ 442



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 4/218 (1%)

Query: 103 EMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           + A  LY+     +W   +P   + ++ + G A        +++  ++  +   +  YN+
Sbjct: 61  QRALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELFDRAES-SIGNCVQVYNS 119

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL-SVYREMKEK 220
           L+    R      V+ +   M D G  P+  T+  +++A  R    E    S+ +++   
Sbjct: 120 LMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAA 179

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++     YNTL++ C+      +A  IFE+M+  + C PD WT+++MI++    G+V  
Sbjct: 180 GLRPDTITYNTLISACSLNNRLSDAILIFEEMQ-RQGCDPDIWTYNAMISVYGRAGRVEA 238

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           A ++F  M E GF P+     S++  + +  R ++V R
Sbjct: 239 ASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVER 276



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 93/194 (47%), Gaps = 1/194 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G +E    +    R+ +   D   ++T+I +YG AG       +Y +MK  G  P+ 
Sbjct: 266 ARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDS 325

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+  L+DT+G+A    +   ++++M  + + P    +++++ AY +A    D    Y  
Sbjct: 326 VTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSC 385

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G++  +  Y+ +L +       ++   +++ M  S   +P+   ++ M+ +   + 
Sbjct: 386 MLRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGS-GLKPELSVYAIMVRVFYQKS 444

Query: 277 KVSEAEAMFNEMLE 290
            ++E E +  EM++
Sbjct: 445 SLAEIENLSKEMVQ 458



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 101/239 (42%), Gaps = 24/239 (10%)

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYG-------EDTLSVYREMKEKGMQLSVTLYNT 231
           + +MT  GL  +     + +  Y R  +         D L  + E+K+  M +++     
Sbjct: 588 FLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAF-EVKDSAMHVAI----- 641

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
            +A    +     A  +F D++       ++  +S++++  +  G    A    + M+ A
Sbjct: 642 -IASYGKLKLWQNAEIVFRDLQR-HGFAGNTSAYSALLSAYAETGNFERATRALDNMVAA 699

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
           G +PN      +++ +G+A +  ++     RLPE+GITP+ R    + +  ++    E  
Sbjct: 700 GLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEA 759

Query: 352 KLV--ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL-FNSISKDVKKAYCNCLIDL 407
           + +  +  E   S    V K LL        + +E  E+    + KD+KKA     +D+
Sbjct: 760 RSMYRQMREAGFSPSIQVFKALL------ALYSRETVEIDAEELVKDIKKAGLELDMDI 812


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/442 (21%), Positives = 196/442 (44%), Gaps = 11/442 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  +++      +  D   + TLI ++  AG  +  +++Y  M+ +G+ P+  
Sbjct: 411 RANYLREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTF 470

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+  +      ++ EM +NG +PN  TY  ++    +AR  ++ + +YR+M
Sbjct: 471 TYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDM 530

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G 
Sbjct: 531 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR--RDWAPDEPVYGLLVDLWGKAGN 588

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   ++ ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    
Sbjct: 589 VDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTL 648

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF----NSIS 393
           LL+  T     ++G   + +  +     ++  L L + +  G+  ++ T  F    +S  
Sbjct: 649 LLSCCTDA-HAQMGLCCQLMAITGHP-AHMFLLYLPDAEPGGENVRDHTRYFLDMMHSED 706

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGA 452
           ++ K+   + +ID      L E A  + E+     VY D ++ +S   W ++L  +S G 
Sbjct: 707 RESKRGLMDAVIDFLHKSGLKEEAGFIWEVAAQKNVYPDSVREKSSAYWLINLHLMSEGT 766

Query: 453 ALTALHIWINDLSKALESGEEFPPLLGINTGHGKH-KYSDKGLA-SVFESHLKELNAPFH 510
           A+TAL   +    + +      P  + I TG G+  + +   L     E  L     P  
Sbjct: 767 AVTALSRTLAWFHRQILVMGSCPERIDIVTGWGRRSRVTGSSLVRQSVEKLLHLFQFPLF 826

Query: 511 DSPDKVGWFLTTEAAAKSWLES 532
            +    G F+        WL +
Sbjct: 827 TARGNTGCFVGCGQPLNQWLHN 848



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +     Y T++ +            +  +M + + C+P   T++ +I        
Sbjct: 356 RQPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEM-NRDRCKPTVVTYNRIIHAYGRANY 414

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F EM EAG+EP+     +LI  + KA   +  +    R+ E+G++PD      
Sbjct: 415 LREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSA 474

Query: 338 LLNVM 342
           ++N +
Sbjct: 475 MVNCL 479


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 36/268 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG VE A  +++  RN   + +   F+  IK+YG  G F   + +++E+   G+ P+++
Sbjct: 396 RAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIV 455

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM   G  P   T+ +L+ AY R    E  ++VYR M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS---------- 267
            + G+   ++ YNT+LA  A  G  +++ ++  +M+    C+P+  T+ S          
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR-CKPNELTYCSLLHAYANGKE 574

Query: 268 -------------------------MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                                    ++ +CS    + EAE  F+E+ E GF P++  L S
Sbjct: 575 IGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNS 634

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
           ++  YG+ Q        L+ + E G TP
Sbjct: 635 MVSIYGRRQMVGKANEVLDYMKERGFTP 662



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L ++ +++    D   ++TLI              V+EEMKA G   + +TYN LLD  G
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYG 325

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           ++ RP +   +  EM  NG SP+  TY SL+ AY R    ++ + +  +M EKG +  V 
Sbjct: 326 KSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y TLL+     G  + A  IFE+M+++  C+P+  TF++ I +   RGK  +   +F+E
Sbjct: 386 TYTTLLSGFERAGKVESAMNIFEEMRNA-GCKPNICTFNAFIKMYGNRGKFVDMMKIFDE 444

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   G  P++    +L+  +G+     +V      +   G  P+
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 142/306 (46%), Gaps = 40/306 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF------------DGC----- 140
           + G V  A  L++  + + + +D  ++++LI  +  +G +            +GC     
Sbjct: 185 KEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLI 244

Query: 141 -----LNVY--------------EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                LNV+              E+MK+ G+ P+  TYN L+    R     +   +++E
Sbjct: 245 TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEE 304

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G S +  TY +LL  YG++   ++ + V  EM+  G   S+  YN+L++  A  G 
Sbjct: 305 MKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGM 364

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            DEA E+   M + +  +PD +T++++++     GKV  A  +F EM  AG +PN+    
Sbjct: 365 LDEAMELKNQM-AEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFN 423

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           + I+ YG   +  D+++  + +   G++PD      LL V  Q     +   V  V K  
Sbjct: 424 AFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNG---MDSEVSGVFKEM 480

Query: 362 SKLGYV 367
            + G+V
Sbjct: 481 KRAGFV 486



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 91/170 (53%), Gaps = 2/170 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++  +G+  R      ++  + ++G S +  +Y SL+ A+  +    + ++V+++M+E+G
Sbjct: 179 VISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEG 238

Query: 222 MQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
            + ++  YN +L +   +G   ++   + E MKS +   PD++T++++IT C       E
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS-DGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           A  +F EM  AGF  +     +L+  YGK+ R  + ++ LN +   G +P
Sbjct: 298 AAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSP 347



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 105/235 (44%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+ E A  +Y R  +     D + ++T++      G ++    V  EM+    KPN 
Sbjct: 500 SRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +LL      K    + ++ +E+    + P      +L+    +     +    + E
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSE 619

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +KE+G    +T  N+++++        +A E+ + MK      P   T++S++ + S   
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMK-ERGFTPSMATYNSLMYMHSRSA 678

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              ++E +  E+L  G +P++    ++I  Y +  R  D  R  + + + GI PD
Sbjct: 679 DFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPD 733



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 93/193 (48%), Gaps = 14/193 (7%)

Query: 82  PKSPRA-SKLKEKSYDTRAGNVEMAFGLYDRAR-----NE-----KWR-IDPN--AFSTL 127
           P++ RA S+LKE+ +      +     +Y R +     NE     K R   P+   +++L
Sbjct: 611 PEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSL 670

Query: 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187
           + ++  + +F     +  E+ A G+KP++I+YN ++    R  R      I+ EM D+G+
Sbjct: 671 MYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGI 730

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
            P+  TY + + +Y      E+ + V R M + G + +   YN+++     +   DEA  
Sbjct: 731 VPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKL 790

Query: 248 IFEDMKSSENCQP 260
             ED+++ +   P
Sbjct: 791 FVEDLRNLDPHAP 803



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 232 LLAMCADVGYTDE------AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           LLA    +G+  +      AF+ F   K  ++   D+   + +I++    G+VS A  +F
Sbjct: 138 LLAFLKGLGFHKKFDLALCAFDWFMKQKDYQSML-DNSVIAIVISMLGKEGRVSSAANLF 196

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ- 344
           N + E GF  +++  TSLI  +  + R  + V    ++ E G  P       +LNV  + 
Sbjct: 197 NGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKM 256

Query: 345 -TPKEELGKLVE 355
            TP  ++  LVE
Sbjct: 257 GTPWNKITSLVE 268


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 208/480 (43%), Gaps = 51/480 (10%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A  ++ + +      D   FSTL++ YG  G +D    ++ +MK  G +P++ 
Sbjct: 262 RAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVN 321

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+   G+     +   ++ ++ D G+ P+ +TYA LL + G+    +    ++R M
Sbjct: 322 TYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHM 381

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +  +  +   +  L+    +     EA   F  MK S  C+PD  T++++I   +  G 
Sbjct: 382 LQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKES-GCKPDLETYNALIGAHAGGGL 440

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD------ 331
             EA + +  M++ G   ++    SLI+ +G+    DD +     + E   +P+      
Sbjct: 441 YCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEA 500

Query: 332 ------------------------------DRFCGCLLNVMTQTPK-EELGKLVECVEKS 360
                                         D +C  LL+V  +  + ++  K++E + + 
Sbjct: 501 LMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYC-LLLSVCARRNRWDDASKVLEEMLEP 559

Query: 361 N--SKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA---YCNCLIDLCVNLNLLE 415
           N  S  G V  +L  E D +G   +     F+ +  D   +   + N L++    L   E
Sbjct: 560 NMPSIYGVVGGILKGEMD-DGTNWQRVEYAFDGLKVDGVGSNLRFYNALLEALWCLGQRE 618

Query: 416 NACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFP 475
            AC++        V  +  SRS   W++ +  +S+GAA+T L +W+ D+   +++   FP
Sbjct: 619 RACRVFAEARKRGVLAEAFSRSDLMWAIDVHRMSVGAAMTTLIVWLADMKAEIDNKSTFP 678

Query: 476 PLLGINTGHGKHKYSDKGLASVFESH-----LKELNAPFHDSPDKVGWFLTTEAAAKSWL 530
           PLL I T  G  K  ++ L S+  +      L  + APF  +    G  +T     + WL
Sbjct: 679 PLLSIVTKWGD-KDPNRDLKSLPAARAILGGLAAIGAPFDFAEWNEGRIITWAPVLQKWL 737



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 3/233 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G VE A G+  R  NE   + D   ++ L+ +YG A   +G   +  EM+  G  P+++ 
Sbjct: 194 GLVEEA-GMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVA 252

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L++  GRA +      ++K+M + G +P+  T+++LL AYG+    ++   ++ +MK
Sbjct: 253 YNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMK 312

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E+G +  V  YNTL+ +    G+  E+  +F D+      +PD  T++ ++  C   G  
Sbjct: 313 ERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDG-GVEPDMSTYAGLLYSCGKGGLH 371

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             A+ +   ML++   P     T LI  YG A    +   A N + E G  PD
Sbjct: 372 KAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPD 424



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 6/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKP 154
           R G  E +  L  R + EK  + PN   ++T+I      G  ++G L ++ +M+  G++P
Sbjct: 121 RNGQHEASLHLLARMKREK--VTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQP 178

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ITYN LL          +   +++ M + G+ P+  TY +L+  YG+A   E    + 
Sbjct: 179 DIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELL 238

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           REM++ G    V  YN L+      G    A ++F+ M+ +  C PD  TFS+++     
Sbjct: 239 REMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEA-GCTPDVVTFSTLLEAYGK 297

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G   E   +F +M E G EP++    +LIQ +G+     + +     L + G+ PD
Sbjct: 298 HGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPD 354



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 2/223 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKE 181
           +F+ LI  YG  G  +  L++   MK   V PN+ITYN +++   +    W+ +  ++ +
Sbjct: 111 SFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQ 170

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G+ P+  TY +LL A       E+   V+R M E G+      YN L+ +      
Sbjct: 171 MRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADR 230

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            +   E+  +M+ + N  PD   ++ +I      GK   A  MF +M EAG  P++   +
Sbjct: 231 HEGVGELLREMEQAGNA-PDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFS 289

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +L++ YGK    D+V      + E G  PD      L+ V  Q
Sbjct: 290 TLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQ 332



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 2/237 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E   GL+ + R+E  + D   ++TL+    + G  +    V+  M   GV P+ ITYN L
Sbjct: 162 EGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNAL 221

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +D  G+A R   V  + +EM   G +P+   Y  L+ AYGRA        ++++M+E G 
Sbjct: 222 VDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGC 281

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
              V  ++TLL      G  DE   +F DMK     +PD  T++++I +    G   E+ 
Sbjct: 282 TPDVVTFSTLLEAYGKHGCYDEVRLLFTDMK-ERGTEPDVNTYNTLIQVFGQGGFFQESI 340

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCL 338
            +F ++L+ G EP++     L+   GK        +    + +  +TP  D F G +
Sbjct: 341 NLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLI 397



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++  N FS + + +    ++   L +++ M +    KPN   Y  ++  MGR     +  
Sbjct: 35  KLTINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKAS 94

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++++M  N +  N  ++ +L+ AYGR    E +L +   MK + +  ++  YNT++  C
Sbjct: 95  ELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINAC 154

Query: 237 ADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           A  G   E    +F  M+  E  QPD  T++++++ CS RG V EA  +F  M EAG  P
Sbjct: 155 AKGGLEWEGLLGLFAQMR-HEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVP 213

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +     +L+  YG+A R + V   L  + + G  PD
Sbjct: 214 DSITYNALVDIYGQADRHEGVGELLREMEQAGNAPD 249



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 59/120 (49%)

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
           S+ + M+    +L++  ++ +    A      +A  +F+ M+  + C+P+   ++ MI I
Sbjct: 24  SIAKTMEGYRNKLTINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGI 83

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G + +A  +F +M     E N++  T+LI  YG+  + +  +  L R+    +TP+
Sbjct: 84  MGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPN 143


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 36/268 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG VE A  +++  RN   + +   F+  IK+YG  G F   + +++E+   G+ P+++
Sbjct: 396 RAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIV 455

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM   G  P   T+ +L+ AY R    E  ++VYR M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS---------- 267
            + G+   ++ YNT+LA  A  G  +++ ++  +M+    C+P+  T+ S          
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR-CKPNELTYCSLLHAYANGKE 574

Query: 268 -------------------------MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                                    ++ +CS    + EAE  F+E+ E GF P++  L S
Sbjct: 575 IGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNS 634

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
           ++  YG+ Q        L+ + E G TP
Sbjct: 635 MVSIYGRRQMVAKANGVLDYMKERGFTP 662



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 1/237 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L ++ +++    D   ++TLI              V+EEMKA G   + +TYN LLD  G
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           ++ RP +   +  EM  NG SP+  TY SL+ AY R    ++ + +  +M EKG +  V 
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y TLL+     G  + A  IFE+M+++  C+P+  TF++ I +   RGK +E   +F+E
Sbjct: 386 TYTTLLSGFERAGKVESAMSIFEEMRNA-GCKPNICTFNAFIKMYGNRGKFTEMMKIFDE 444

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +   G  P++    +L+  +G+     +V      +   G  P+      L++  ++
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSR 501



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 142/306 (46%), Gaps = 40/306 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF------------DGC----- 140
           + G V  A  +++  + + + +D  ++++LI  +  +G +            DGC     
Sbjct: 185 KEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLI 244

Query: 141 -----LNVY--------------EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                LNV+              E+MK+ G+ P+  TYN L+    R     +   +++E
Sbjct: 245 TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEE 304

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G S +  TY +LL  YG++   ++ + V  EM   G   S+  YN+L++  A  G 
Sbjct: 305 MKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGM 364

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            DEA E+   M + +  +PD +T++++++     GKV  A ++F EM  AG +PN+    
Sbjct: 365 LDEAMELKNQM-AEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFN 423

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           + I+ YG   +  ++++  + +   G++PD      LL V  Q     +   V  V K  
Sbjct: 424 AFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQN---GMDSEVSGVFKEM 480

Query: 362 SKLGYV 367
            + G+V
Sbjct: 481 KRAGFV 486



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 90/170 (52%), Gaps = 2/170 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++  +G+  R      ++  + ++G S +  +Y SL+ A+  +    + ++V+++M+E G
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238

Query: 222 MQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
            + ++  YN +L +   +G   ++   + E MKS +   PD++T++++IT C       E
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS-DGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           A  +F EM  AGF  +     +L+  YGK+ R  + ++ LN +   G +P
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSP 347



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 44/274 (16%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+ E A  +Y R  +     D + ++T++      G ++    V  EM+    KPN 
Sbjct: 500 SRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559

Query: 157 ITYNNLLDTMGRAK-------------------RPWQVKTI----------------YKE 181
           +TY +LL      K                   R   +KT+                + E
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSE 619

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CAD 238
           + + G SP+  T  S++  YGR +       V   MKE+G   S+  YN+L+ M    AD
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSAD 679

Query: 239 VGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            G ++E   EI      ++  +PD  +++++I       ++ +A  +F+EM  +G  P++
Sbjct: 680 FGKSEEILREIL-----AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDV 734

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               + I  Y      ++ +  +  + + G  P+
Sbjct: 735 ITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 14/193 (7%)

Query: 82  PKSPRA-SKLKEKSYDT-------------RAGNVEMAFGLYDRARNEKWRIDPNAFSTL 127
           P++ RA S+LKE+ +               R   V  A G+ D  +   +      +++L
Sbjct: 611 PEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSL 670

Query: 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187
           + ++  + +F     +  E+ A G+KP++I+YN ++    R  R      I+ EM ++G+
Sbjct: 671 MYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGI 730

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
            P+  TY + + +Y      E+ + V R M + G + +   YN+++     +   DEA  
Sbjct: 731 VPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKL 790

Query: 248 IFEDMKSSENCQP 260
             ED+++ +   P
Sbjct: 791 FVEDLRNLDPHAP 803



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 15/198 (7%)

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL-SVYREMKEKGMQL 224
           +G+++ P     + K  + +GLSP       +LR+     +    L SV  E+ E     
Sbjct: 78  IGKSRDP----NLGKPWSYHGLSPQGQ---QVLRSLIEPNFDSGQLDSVLSELFEPFKDK 130

Query: 225 SVTLYNTLLAMCADVGYT---DEAFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVS 279
             +  + LLA    +G+    D A   F+     ++ Q   D+   + +I++    G+VS
Sbjct: 131 PESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVS 190

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  MFN + E GF  +++  TSLI  +  + R  + V    ++ E G  P       +L
Sbjct: 191 SAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVIL 250

Query: 340 NVMTQ--TPKEELGKLVE 355
           NV  +  TP  ++  LVE
Sbjct: 251 NVFGKMGTPWNKITSLVE 268


>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 875

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/486 (24%), Positives = 216/486 (44%), Gaps = 62/486 (12%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++A   E A  +YD  ++   R+D  +++TL+ LY   G F+  +  ++EM+  G+K ++
Sbjct: 377 SKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDV 436

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L++  GR  +  +V+ ++ EM    + PN  TY++L++ Y + R   + + VYRE
Sbjct: 437 VTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRE 496

Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +K++GM+  V  Y+ L+ A+C + G  + +  +  D+ + +  +P+  T++S+I      
Sbjct: 497 LKQEGMKTDVVFYSALIDALCKN-GLIESSLRLL-DVMTEKGSRPNVVTYNSIIDAFRIG 554

Query: 276 GKVSEAEAMFNEMLEAG---FEP-----------------NLFVLTSLIQCYG------- 308
            ++   E   +   +A     +P                 N  ++  L Q          
Sbjct: 555 QQLPALECAVDTSFQANEHQIKPSSSRLSAGNFQDQKTGNNDEIMKMLEQLAAEKAGLMK 614

Query: 309 --KAQRTDD--VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
             K  R D   +V+   ++ E+ I P+      +LN  +     ++  KL++ +   +S 
Sbjct: 615 KDKRSRQDSFYLVQIFQKMQEMEIKPNVVTFSAILNACSCCETFQDASKLLDALCMFDSH 674

Query: 364 LGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKL 420
           +  V   LL     +G    +A  LF+ +         A+ N L D+            L
Sbjct: 675 VYGVAHGLLMGHG-QG-LWNQAQTLFDELEHLDSSTASAFYNALTDM------------L 720

Query: 421 LELGLTLEVYT-DIQSRSPTQWS-------LHLKSLSLGAALTALHIWINDLSKALESGE 472
              G  L   T  I+ R+   W        L L   S GAA   +H W+ +L   +  G+
Sbjct: 721 WHFGQKLGAQTVVIEGRNRNVWKGGWSTECLDLHLTSCGAACAMVHTWLLELRTTVFGGQ 780

Query: 473 EFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 530
           + PP+L I TG GKH     +  L    E+ L  + APF  S   +G F +      +WL
Sbjct: 781 KPPPILSILTGWGKHSKVVGNGTLRKAVEALLNGIGAPFQISECNLGRFKSEGPEVTAWL 840

Query: 531 ESRSSL 536
              S+L
Sbjct: 841 RQPSTL 846



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 2/224 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQVKTI 178
           D   +++L+K     G +  C ++  EM+  G+  ++ TYN  +D + +  R       I
Sbjct: 294 DRLTYNSLLKTCVAKGRWQLCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAI 353

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM    + PN  TY++L+  Y +A   ED L++Y EMK   ++L    YNTL+ + A+
Sbjct: 354 DVEMPAKNILPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYAN 413

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +G+ +EA   F++M+     + D  T++++I       K  E   +F+EM      PN  
Sbjct: 414 LGWFEEAVGKFKEMECC-GIKNDVVTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDL 472

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
             ++LI+ Y K +   + +     L + G+  D  F   L++ +
Sbjct: 473 TYSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDAL 516



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 162/367 (44%), Gaps = 77/367 (20%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   +E+A  L++ +RN  +     +FS +I   G    F   +++   M   G++PN++
Sbjct: 201 RLKKIELALNLFEESRNRGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGNFGLEPNLV 260

Query: 158 TYNNLLDTMGRAKRPWQVKTIY-KEMTDNGLSPNWNTYASLLR---AYGRARYGEDTLSV 213
           TYN ++D   + + P+++   + +EM   G  P+  TY SLL+   A GR +   D L+ 
Sbjct: 261 TYNAIIDAGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDLLA- 319

Query: 214 YREMKEKGMQLSVTLYNTLL-AMC-----------ADV-------------------GYT 242
             EM+ KG+   V  YNT + A+C            DV                   GY+
Sbjct: 320 --EMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNILPNVVTYSTLMAGYS 377

Query: 243 -----DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
                ++A  I+++MK     + D  ++++++ + +  G   EA   F EM   G + ++
Sbjct: 378 KAERFEDALNIYDEMKHLL-IRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCGIKNDV 436

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
               +LI+ YG+  +  +V +  + +    I P+D     L+ + T+             
Sbjct: 437 VTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTYSTLIKIYTKG------------ 484

Query: 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID-LCVNLNLLEN 416
                      ++  E  D+  + K+E       +  DV   + + LID LC N  L+E+
Sbjct: 485 -----------RMYAEAMDVYRELKQEG------MKTDV--VFYSALIDALCKN-GLIES 524

Query: 417 ACKLLEL 423
           + +LL++
Sbjct: 525 SLRLLDV 531



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 107/248 (43%), Gaps = 7/248 (2%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           S +I+  G     +  LN++EE +  G    + +++ ++  +GR     +  ++ + M +
Sbjct: 193 SNMIRTLGRLKKIELALNLFEESRNRGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGN 252

Query: 185 NGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            GL PN  TY +++ A  +     E  +    EM   G       YN+LL  C   G   
Sbjct: 253 FGLEPNLVTYNAIIDAGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQ 312

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA-EAMFNEMLEAGFEPNLFVLTS 302
              ++  +M+  +    D +T+++ +      G++  A  A+  EM      PN+   ++
Sbjct: 313 LCRDLLAEME-WKGIGRDVYTYNTYVDALCKGGRMDLARHAIDVEMPAKNILPNVVTYST 371

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELGKL--VECVE 358
           L+  Y KA+R +D +   + +  L I  D      L+ +       +E +GK   +EC  
Sbjct: 372 LMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEMECCG 431

Query: 359 KSNSKLGY 366
             N  + Y
Sbjct: 432 IKNDVVTY 439


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 118/489 (24%), Positives = 214/489 (43%), Gaps = 67/489 (13%)

Query: 98  RAGNVEMAFG-LYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           + GN+E+A   L D    E   + PN   +STLI  Y     ++  L + E+MK++ ++ 
Sbjct: 99  KCGNMELAMQVLLDM---EAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQL 155

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + + YN LL    +A +  ++  +  EM + G+  +  TY SL+  YG+    +    + 
Sbjct: 156 DRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILV 215

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           ++M+++G+  SV  Y+TL+ + +  G   +AF ++ D K S   +PD   FSS I   + 
Sbjct: 216 QDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKES-GLKPDVVLFSSFIDTLAK 274

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ--RTDD---------------VV 317
            G +  A ++ N+M E G +PN+    ++I  +GK++    DD               +V
Sbjct: 275 NGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIV 334

Query: 318 RALN----------------------------RLPELGITPDDRFCGCLLNVMTQTPK-E 348
           R  N                            ++ + G+ P+      +LN  ++    E
Sbjct: 335 RVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSFE 394

Query: 349 ELGKLVECVEK-SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCL 404
           +   L+E +    N   G    LL+  +++      +A  LFN + +       A+ N L
Sbjct: 395 DAALLLEQLRLFDNFVYGVAYGLLVGSREVW----SQAQSLFNQLGRMDSPTSSAFYNAL 450

Query: 405 IDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDL 464
            D+  +      A +++  G+   V+ +    +  ++ L L  +S GAA   +H W+ ++
Sbjct: 451 TDVLWHFGQRRKAQQVVFEGINRRVWEN----TWGEFCLDLHLMSCGAAQAMVHAWLLNV 506

Query: 465 SKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPDKVGWFLTT 522
              +  G   P  L I TG GKH        L  V E+ L  + APF      +G F++ 
Sbjct: 507 RSIVFEGRAMPEFLSILTGWGKHSRIAGASTLRRVIEALLNSIGAPFQVERFNIGRFVSP 566

Query: 523 EAAAKSWLE 531
            A   +WL 
Sbjct: 567 SAVVAAWLR 575



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 108/234 (46%), Gaps = 3/234 (1%)

Query: 100 GNVEMAF--GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G V++ F  G + +   +    D   F++L+      G+ +    V++EM  +G+  ++ 
Sbjct: 29  GGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRVGHLEDARAVFDEMIHLGIGRDIY 88

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN  +D + +         +  +M   G+ PN  TY++L+  Y +    E+ L +  +M
Sbjct: 89  TYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKM 148

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K   +QL    YNTLLA+    G   E   + ++M+     + D+ T++S+I     +G+
Sbjct: 149 KSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEEL-GIEKDTVTYNSLINGYGKQGR 207

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +     +  +M + G  P++   ++LI  Y KA    D         E G+ PD
Sbjct: 208 LDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPD 261



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGED---TLSVYREMKEKGMQLSVTLYNTLLA 234
           + + M   GL P   +Y +++ A G+   G D   TL  +R+M + G+      +N+LLA
Sbjct: 3   VLESMKGAGLRPTTVSYNAVIDACGKG--GVDLRFTLGYFRQMLKDGLCPDRKTFNSLLA 60

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGF 293
            C+ VG+ ++A  +F++M        D +T+++ I  IC C G +  A  +  +M   G 
Sbjct: 61  ACSRVGHLEDARAVFDEMIHL-GIGRDIYTYNTFIDAICKC-GNMELAMQVLLDMEAKGV 118

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           +PN+   ++LI  Y K ++ ++ ++   ++  + I   DR C
Sbjct: 119 KPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQL-DRVC 159



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 126/281 (44%), Gaps = 34/281 (12%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +GK G      I V     R       +Y T      +AG    AF +Y   +    + D
Sbjct: 202 YGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPD 261

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              FS+ I      G  +  L++  +M  +G+KPN++TYN ++D  G++K   +  +   
Sbjct: 262 VVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDS--- 318

Query: 181 EMTDNGLSPNWNTYASLLRAYG------------RARYGED---TLSVYREMKEKGMQLS 225
           E+ D G+   +     ++R               R R  ++    L ++++M ++G++ +
Sbjct: 319 EVGDMGIVGVYG--GQIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPN 376

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           V  ++ +L  C+     ++A  + E ++  +N     +  +  + + S R   S+A+++F
Sbjct: 377 VVTFSAILNACSRCNSFEDAALLLEQLRLFDNF---VYGVAYGLLVGS-REVWSQAQSLF 432

Query: 286 NEM--LEAGFEPNLF-VLTSLIQCYGKAQRTDDVV-RALNR 322
           N++  +++      +  LT ++  +G+ ++   VV   +NR
Sbjct: 433 NQLGRMDSPTSSAFYNALTDVLWHFGQRRKAQQVVFEGINR 473


>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 174/365 (47%), Gaps = 9/365 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  +++      ++ D   + TLI ++  +G  +  +++Y  M+ +G+ P+  
Sbjct: 410 RANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTF 469

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+  +      ++ EM DNG +PN  TY  ++    +AR  ++ + +YR+M
Sbjct: 470 TYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDM 529

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G 
Sbjct: 530 QIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMR--RDWAPDEPVYGLLVDLWGKAGN 587

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   ++ ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    
Sbjct: 588 VDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTL 647

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEATELFNSIS 393
           LL+  T     ++G   + +  +     ++  L L + +  G    D  +   ++ +S  
Sbjct: 648 LLSCCTDA-HAQMGLCCQLMAITGHP-AHMFLLYLPDAEPGGENVRDHARYFLDMMHSED 705

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGA 452
           ++ K+   + +ID      L E A  + E+     VY D ++ +S + W ++L  +S G 
Sbjct: 706 RESKRGIMDAVIDFLHKSGLKEEAGFIWEVAAQRNVYPDSVREKSSSYWLINLHLMSEGT 765

Query: 453 ALTAL 457
           A+TAL
Sbjct: 766 AVTAL 770



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +     Y T++ +           ++ ++M SS NC+P   T++ +I        
Sbjct: 355 RQPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEM-SSVNCKPTVVTYNRIIHAYGRANY 413

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F EM  AG++P+     +LI  + K+   +  +    R+ E+G++PD      
Sbjct: 414 LREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSA 473

Query: 338 LLNVM 342
           ++N +
Sbjct: 474 MVNCL 478


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 122/241 (50%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L D  RN   R D   ++TL+       N DG + V+E+M+A   +P++ TYN ++
Sbjct: 280 LAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMI 339

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR     + + ++ E+   G  P+  TY SLL A+ R R  E    VY++M++ G  
Sbjct: 340 SVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG 399

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M    G  D A ++++DMK      PD+ T++ +I       +  EA A
Sbjct: 400 KDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAA 459

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           + +EML+ G +P L   ++LI  Y KA + ++     + +   G  PD+     +L+V+ 
Sbjct: 460 LMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519

Query: 344 Q 344
           +
Sbjct: 520 R 520



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 199/422 (47%), Gaps = 27/422 (6%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++++   +++++K+Y    ++   + VY+ +K  G++P+  TYN L+    R +RP +  
Sbjct: 923  FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             + ++M + GL P  +TY SL+ A+G+ +  E    ++ E+  KG++L  + Y+T++ + 
Sbjct: 983  LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             D G   +A ++ + MK++   +P   T   ++   S  G   EAE + + + +   E  
Sbjct: 1043 RDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELT 1101

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT-QTPKEELGKLVE 355
                +S+I  Y +++  +  +  L  + + G+ PD R   C +   +    K E+  L++
Sbjct: 1102 TLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLK 1161

Query: 356  CVEKSNSKLGYVVKLL-----LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 410
             +E     L   ++LL     L   +++G F+K       SI  +    + N L++L   
Sbjct: 1162 ALEDIGFDLP--IRLLAGRPELLVSEVDGWFEK-----LKSIEDNAALNFVNALLNLLWA 1214

Query: 411  LNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALE 469
              L   A  + +LG+   +++ D+   +   W    + LS GAAL A          +LE
Sbjct: 1215 FELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALDA----------SLE 1264

Query: 470  SGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSW 529
               E P  + + TG    +Y+   L    ++ L E+ +PF     + G  +    + + W
Sbjct: 1265 GYPESPKSVVLITGTA--EYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSLRMW 1322

Query: 530  LE 531
            L+
Sbjct: 1323 LK 1324



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 3/232 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +I+ YG    +    +V   ++  G  P++ T+N+L+    +     + + I+  M 
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G SP   +   LL A       E+   V  E+++ G ++S +    +L   A  G   
Sbjct: 815 RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTS 302
           E  +I+  MK++    P    +  MI +  C+GK V +AE M +EM EA F+  L +  S
Sbjct: 875 EVKKIYSSMKAA-GYLPTIRLYRMMIELL-CKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           +++ Y   +     V+   R+ E G+ PD+     L+ +  +  + E G L+
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLL 984



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/160 (18%), Positives = 77/160 (48%), Gaps = 3/160 (1%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            +E A  L++   ++  ++D + + T++K+   +G+      + + MK  G++P + T + 
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHL 1072

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            L+ +   +  P + + +   + D  +      Y+S++ AY R++     +    EMK++G
Sbjct: 1073 LMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEG 1132

Query: 222  MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            ++    ++   +   +   ++ E  E+   +K+ E+   D
Sbjct: 1133 LEPDHRIWTCFVRAAS---FSKEKIEVMLLLKALEDIGFD 1169



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y TLL  C    +  EA ++F D++ S  C+       SM+ +    G    A  +
Sbjct: 680 SSTMYETLLHCCVANEHYAEASQVFSDLRLS-GCEASESVCKSMVVVYCKLGFPETAHQV 738

Query: 285 FNEMLEAGFE----PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            N+    GF     P   + T +I+ YGK +        +  L + G TPD +    L++
Sbjct: 739 VNQAETKGFHFACSP---MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMS 795

Query: 341 VMTQ 344
              Q
Sbjct: 796 AYAQ 799


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 201/449 (44%), Gaps = 26/449 (5%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L ++ ++ + ++D   ++TL+ +Y   G +D    V EEM+ +G++ + +TYN+L++
Sbjct: 404 ALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLIN 463

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G+  R   V  + ++M   G++P+  TY++L+  Y +A    D  +VY + KE G++ 
Sbjct: 464 GYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKA 523

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            V L+++ +   A  G  + A  + ++M      +P+  T++++I         +E ++ 
Sbjct: 524 DVVLFSSFIDTLAKNGLVECALSLLDEMMKM-GIKPNVVTYNTIIDAFGKSKIFTEEDSD 582

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA----------LNRLPELGITPDDRF 334
             +M   G      V  +     G    TD  +R             ++ + G+ P+   
Sbjct: 583 IGDMGIVGVYGGQVVRVTNPVIRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVT 642

Query: 335 CGCLLNVMTQTPK-EELGKLVECVEK-SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
              +LN  ++    E+   L+E +    NS  G    LL+  ++       +A  LFN +
Sbjct: 643 FSAILNACSRCNSFEDAALLLEQLRLFDNSVYGVAYGLLMGHREAW----SQARSLFNQL 698

Query: 393 SK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS 449
            +       A+ N L D+  +    + A +++  G+   V+ +        + L L  +S
Sbjct: 699 GRMDSPTSSAFYNALTDVLWHFGQRQGAQQVVLEGVNRRVWENTWG----DFCLDLHLMS 754

Query: 450 LGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNA 507
            GAA   +H W+ ++   +  G   P  L I TG GKH        L  V E+ L  + A
Sbjct: 755 CGAAQAMVHAWLLNVRSIVFEGRAMPEFLSILTGWGKHSKVAGSSTLRRVIEALLLSIGA 814

Query: 508 PFHDSPDKVGWFLTTEAAAKSWLESRSSL 536
           PF      +G F++  A   +WL    ++
Sbjct: 815 PFQAERFNIGRFVSPSALVSAWLRESGTI 843



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 2/219 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY-KE 181
           A S LI  Y  +G     + V E MK  G++P  ++YN ++D  G+     +    Y ++
Sbjct: 246 AHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQ 305

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +GL P+  T+ SLL A  RA + ED  +V+ EM   G    +  YNT +      G 
Sbjct: 306 MLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGN 365

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
              A ++  DM+++ N +P+  T+S+++   S   K  EA  +  +M     + +     
Sbjct: 366 MGLALQVVLDMEAN-NAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYN 424

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           +L+  Y K  + D++      + +LGI  D      L+N
Sbjct: 425 TLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLIN 463



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 9/259 (3%)

Query: 100 GNVEMAF--GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G V++ F  G + +   +    D   F++L+     AG+ +    V++EM  +G   ++ 
Sbjct: 292 GGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIY 351

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN  +D + +         +  +M  N   PN  TY++L+  + +    ++ L +  +M
Sbjct: 352 TYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKM 411

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K   +QL    YNTLLA+    G  DE   + E+M+     + D+ T++S+I     +G+
Sbjct: 412 KSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKL-GIEKDTVTYNSLINGYGKQGR 470

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +     +  +M   G  P++   ++LI  Y KA    D         E G+  D      
Sbjct: 471 LDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSS 530

Query: 338 LLNVMTQTPKEELGKLVEC 356
            ++ + +        LVEC
Sbjct: 531 FIDTLAKN------GLVEC 543



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 48/239 (20%)

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWN----TYASLLRAYGRARYGEDTLSVYREMK 218
           +  +G+  RP     + +   D G++ ++      +++L+ AY R+    + + V   MK
Sbjct: 216 IGALGKMGRP----DLARRAFDTGIAGSYGNTVFAHSALISAYARSGLATEAMGVLESMK 271

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEI--FEDMKSSENCQPDSWTFSSMITICSCRG 276
             G++ +   YN ++  C   G  D  F +  F  M     C PD  TF+S++  CS  G
Sbjct: 272 GAGLRPTTVSYNAVIDACGK-GGVDLRFTLGYFRQMLQDGLC-PDRKTFNSLLAACSRAG 329

Query: 277 KVSEAEAMFNEMLEAG-----------------------------------FEPNLFVLT 301
            + +A  +F+EM+  G                                    +PN+   +
Sbjct: 330 HLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYS 389

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
           +L+  + K ++ D+ ++   ++  L I  D      LL +  +T K +E+  + E +EK
Sbjct: 390 TLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEK 448



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 11/186 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++M   L    R +        +STLI +Y  AG      NVY + K  G+K +++
Sbjct: 467 KQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVV 526

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +++ +DT+ +        ++  EM   G+ PN  TY +++ A+G+++   +  S   +M
Sbjct: 527 LFSSFIDTLAKNGLVECALSLLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEEDSDIGDM 586

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTD-------EAF---EIFEDMKSSENCQPDSWTFSS 267
              G+     +  T   +      TD       E F   E+F+ M   +  +P+  TFS+
Sbjct: 587 GIVGVYGGQVVRVTNPVIRGGRSATDVRMRRSQELFFILELFQKM-VQQGVRPNVVTFSA 645

Query: 268 MITICS 273
           ++  CS
Sbjct: 646 ILNACS 651



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 115/241 (47%), Gaps = 20/241 (8%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG    AF +Y   +    + D   FS+ I      G  +  L++ +EM  +G+KPN+
Sbjct: 501 SKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMMKMGIKPNV 560

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS--LLRAYGRA------RYGE 208
           +TYN ++D  G++K   +  +   +M   G+        +  ++R  GR+      R  +
Sbjct: 561 VTYNTIIDAFGKSKIFTEEDSDIGDMGIVGVYGGQVVRVTNPVIRG-GRSATDVRMRRSQ 619

Query: 209 D---TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
           +    L ++++M ++G++ +V  ++ +L  C+     ++A  + E ++  +N    S   
Sbjct: 620 ELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLEQLRLFDN----SVYG 675

Query: 266 SSMITICSCRGKVSEAEAMFNEM--LEAGFEPNLF-VLTSLIQCYGKAQRTDDVV-RALN 321
            +   +   R   S+A ++FN++  +++      +  LT ++  +G+ Q    VV   +N
Sbjct: 676 VAYGLLMGHREAWSQARSLFNQLGRMDSPTSSAFYNALTDVLWHFGQRQGAQQVVLEGVN 735

Query: 322 R 322
           R
Sbjct: 736 R 736


>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
 gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
          Length = 564

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 196/448 (43%), Gaps = 26/448 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA +++ +  L++  +      D   + TLI L   AG  D  +++Y +M+  G +P+  
Sbjct: 114 RANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTF 173

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ ++  +G+A +      ++ EMTD G +P+  TY  ++  + +A   +  L +Y ++
Sbjct: 174 TYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDL 233

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G       Y  ++ +  + G+ ++A ++FE+M+ +     D+  F  M+ +    G 
Sbjct: 234 QEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERA-GWVADNPIFGLMVDMWGKTGN 292

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCG 336
             +A   FN ML++G +PN+    SL+  Y ++   D     L  + + G+ P    +  
Sbjct: 293 AEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTS 352

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLG-YVVKLLLEEQDIEGD---FKKEATELFNSI 392
            L +        E   L   +  +      +V  LL   + + G    F     E   S 
Sbjct: 353 LLSSCAACRAAWEYDALFGLMGGTGHPAHPFVCSLLASGEMVVGIRCFFDAMQFEELES- 411

Query: 393 SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-------IQSRSPTQWSLHL 445
               ++ + + LID       L  A K +  G   EV  +       ++ ++P  WS++L
Sbjct: 412 ----RRGFADSLID------FLHRAGKAVAAGSVWEVAAEKNLYPNAVREKAPQYWSINL 461

Query: 446 KSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKG--LASVFESHLK 503
             +S G AL AL   +   ++A+      P  + I TG G+         +    E  L+
Sbjct: 462 HVMSTGTALVALARTLAMFAEAVVRTGAAPYRIDIITGWGRRSRVPGASLVKQAVEGMLR 521

Query: 504 ELNAPFHDSPDKVGWFLTTEAAAKSWLE 531
            LN+PFH     VG F+    A   WL+
Sbjct: 522 SLNSPFHLDGLNVGCFVGQGPALAEWLK 549



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 133/283 (46%), Gaps = 9/283 (3%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMA--FGLYDRARNEKWR--IDPNA- 123
           + G +   +IW   ++    K    +Y T  G +  A  F + +   +E  R   +PN  
Sbjct: 46  EAGVAYNFFIWARKQA--GFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVV 103

Query: 124 -FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            ++ LI  YG A + D  L ++  M+ +G +P+ +TY  L+D   +A        +Y++M
Sbjct: 104 TYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQM 163

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G  P+  TY+ ++   G+A        ++ EM ++G   S+  YN ++ + A  G  
Sbjct: 164 QHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKF 223

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A +++ D++      PD  T+  ++ +    G + +AE +F EM  AG+  +  +   
Sbjct: 224 DMALKLYSDLQEV-GYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGL 282

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           ++  +GK    +   +  NR+ + G+ P+   C  LL+   ++
Sbjct: 283 MVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRS 325


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 131/265 (49%), Gaps = 2/265 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R     +A  L+D    EK+ +D  A++T++  Y   G +   ++++ +MK IG+ P ++
Sbjct: 192 RESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLV 251

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +LD  G+  R W ++  +  EM   GL  +  T ++++ A GR    ++      E
Sbjct: 252 TYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAE 311

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K  G +     YN++L +    G   EA  I ++M+ + NC PDS T++ +       G
Sbjct: 312 LKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDN-NCPPDSVTYNELAATYVRAG 370

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + E  A+ + M   G  PN    T++I  YGKA R DD +R  + + +LG  P+     
Sbjct: 371 FLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYN 430

Query: 337 CLLNVMTQTPKEELGKLVECVEKSN 361
            +L ++ +  + E    V C  K N
Sbjct: 431 SVLAMLGKKSRTEDVIKVLCEMKLN 455



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 119/272 (43%), Gaps = 36/272 (13%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L D  R++   +D    ST+I   G  G  D       E+K  G KP  +TYN++L   G
Sbjct: 273 LLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFG 332

Query: 168 RAKRPWQVKTIYKEMTDN-----------------------------------GLSPNWN 192
           +A    +  +I KEM DN                                   G+ PN  
Sbjct: 333 KAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAI 392

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           TY +++ AYG+A   +D L ++  MK+ G   +V  YN++LAM      T++  ++  +M
Sbjct: 393 TYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 452

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           K +  C P+  T+++M+ +CS  GK +    +  EM   GFEP+     +LI  Y +   
Sbjct: 453 KLN-GCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGS 511

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             D  +    + + G TP       LLN + +
Sbjct: 512 EVDSAKMYGEMVKSGFTPCVTTYNALLNALAR 543



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 7/219 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  +     +     D   ++ L   Y  AG  D  + V + M + GV PN I
Sbjct: 333 KAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAI 392

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D  G+A R      ++  M D G +PN  TY S+L   G+    ED + V  EM
Sbjct: 393 TYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEM 452

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICSCR 275
           K  G   +   +NT+LA+C++ G  +   ++  +MK   NC  +PD  TF+++I+  +  
Sbjct: 453 KLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMK---NCGFEPDKDTFNTLISAYARC 509

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           G   ++  M+ EM+++GF P +    +L+     A+R D
Sbjct: 510 GSEVDSAKMYGEMVKSGFTPCVTTYNALLNAL--ARRGD 546



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 85/173 (49%), Gaps = 1/173 (0%)

Query: 109 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           +D+ +   ++ D    ++++ ++     F     +   +   G++PN+ TYN L+D   R
Sbjct: 624 FDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVR 683

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
               W+ + + K + ++G  P+  +Y ++++ + R    ++ + V  EM  KG+Q ++  
Sbjct: 684 EGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVT 743

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           YNT L+  A +   DEA E+   M    NC+P   T+  ++      GK  EA
Sbjct: 744 YNTFLSGYAGMELFDEANEVIRFM-IEHNCRPSELTYKILVDGYCKAGKYEEA 795



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 11/220 (5%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           +N  +  D + F+TLI  Y   G+      +Y EM   G  P + TYN LL+ + R    
Sbjct: 488 KNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDW 547

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
              +++ ++M   G  PN N+Y+ LL  Y +A   +    V +E+ +  +  S  L  TL
Sbjct: 548 KAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTL 607

Query: 233 LAM---CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           +     C  +   + AF    D       +PD    +SM+++ +     S+A  M + + 
Sbjct: 608 VLTNHKCRHLRGMERAF----DQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIH 663

Query: 290 EAGFEPNLFVLTSLIQCY---GKAQRTDDVVRAL-NRLPE 325
           E G +PNLF    L+  Y   G+  + ++V++ + N  PE
Sbjct: 664 ECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPE 703



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 113/271 (41%), Gaps = 36/271 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV-------------- 143
           R G+ + A  +    R + ++ + N++S L+  Y  AGN  G   V              
Sbjct: 543 RRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWI 602

Query: 144 ---------------------YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
                                +++++  G KP+++  N++L    R K   + + +   +
Sbjct: 603 LLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFI 662

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            + GL PN  TY  L+  Y R         V + ++  G +  V  YNT++      G  
Sbjct: 663 HECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLM 722

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EA  +  +M +++  QP   T+++ ++  +      EA  +   M+E    P+      
Sbjct: 723 QEAIGVLSEM-TTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKI 781

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           L+  Y KA + ++ +  ++++ EL I+ DD+
Sbjct: 782 LVDGYCKAGKYEEAMDFVSKIKELDISFDDQ 812



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 107/230 (46%), Gaps = 7/230 (3%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE-EMKAIGVKPNMITYNNLLDTM 166
           L D   + K+ +    F +L+K    +GN++  L ++E      G   N+   N +++ M
Sbjct: 127 LNDFFNSVKFELLEADFPSLLKALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELM 186

Query: 167 ----GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
               GR  +      ++  +     S +   Y ++L +Y R    +  + ++ +MKE G+
Sbjct: 187 VRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGL 246

Query: 223 QLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             ++  YN +L +   +G + D   E+ ++M+S +  + D +T S++I+ C   G + EA
Sbjct: 247 DPTLVTYNVMLDVYGKMGRSWDRILELLDEMRS-KGLELDEFTCSTVISACGREGMLDEA 305

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                E+   G++P      S++Q +GKA    + +  L  + +    PD
Sbjct: 306 RKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPD 355


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 183/419 (43%), Gaps = 10/419 (2%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++ D    + L+ +Y  AGNFD    VY  +   G++P+  TYN L+    R+ RP +  
Sbjct: 916  FKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGF 975

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            T+  EM   GL+P   +Y SLL A  +A   E    ++ EM+ K  QL+ ++Y+ ++ + 
Sbjct: 976  TLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIY 1035

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             + G   +A  +   MK  +  +P   T   ++T     G+  EAE + N +  +  E +
Sbjct: 1036 RNAGNHSKAENLLAVMK-EDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVS 1094

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
                +++   Y K    +     L  +   G+ PD +   C +   +   +     L   
Sbjct: 1095 TLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAIL--- 1151

Query: 357  VEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL--FNSISKDVKKAYCNCLIDLCVNLNLL 414
            + KS    G+ + + L  +       + A  L    ++       + N + DL       
Sbjct: 1152 LLKSLQDCGFDLPIRLLTERTPSLLSEIANYLEELEALEDSAALNFVNAVEDLLWAFECR 1211

Query: 415  ENACKLLELGLTLEVYTDIQSR-SPTQWSLHLKSLSLGAALTALHIWINDLSKA-LESGE 472
              A ++ +L +   +Y D   R +   W    + LS GAAL  L +W++ +  A L+   
Sbjct: 1212 ATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVGLTLWLDHMQDASLQGSP 1271

Query: 473  EFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 531
            E P  + + TG G  +Y+   L     ++L E+ +PF     + G F+  + + K WL+
Sbjct: 1272 ESPKSVVLVTGEG--EYNMVSLRKTIRAYLLEMGSPFLPCRARSGRFVVKDYSLKMWLK 1328



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 120/246 (48%), Gaps = 1/246 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L    R    R D   ++TLI     + N +  + V+E+M A   +P++ TYN ++
Sbjct: 276 VALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMV 335

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR  +  + + +++E+ + G  P+  TY SLL A+ +    +       ++ + G +
Sbjct: 336 SVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFK 395

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
            +   YNT++ M   +G  D A  ++++M++   C PD+ T++ MI       +++EA  
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAM-GCTPDAVTYTVMIDSLGKMNRIAEAGK 454

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           +  +M +AG +P L   ++LI  Y K  R  D     + +   G+ PD      +L+V  
Sbjct: 455 VLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFA 514

Query: 344 QTPKEE 349
           ++   E
Sbjct: 515 RSGDTE 520



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 117/235 (49%), Gaps = 6/235 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++T+I +YG  G  D  + +Y+EM+A+G  P+ +TY  ++D++G+  R  +   + ++MT
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMT 460

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D GL P    +++L+ AY +     D  + +  M   G++     Y  +L + A  G T+
Sbjct: 461 DAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTE 520

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +   ++  M  ++N +PD   +  ++   +   K  E E +  +M E     NL +++++
Sbjct: 521 KMLCLYRKMM-NDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDM-ELLCRMNLGIISTM 578

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECV 357
           +    KA+      + L +    G  PD +    ++N    T K E G  L+EC+
Sbjct: 579 LI---KARCVSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECI 630



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 132/281 (46%), Gaps = 3/281 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +++ N+E A  +++     + R D   ++ ++ ++G  G  +    ++ E+   G  P+ 
Sbjct: 304 SQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDA 363

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITYN+LL    +     +V+   +++   G   N  TY +++  YG+    +  + +Y E
Sbjct: 364 ITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDE 423

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+  G       Y  ++     +    EA ++ EDM  +   +P    FS++I   +  G
Sbjct: 424 MRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDA-GLKPTLIAFSALICAYAKGG 482

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           + ++AE  F+ M+ +G +P+      ++  + ++  T+ ++    ++      PDD    
Sbjct: 483 RRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQ 542

Query: 337 CLLNVMTQTPK-EELGKLVECVE-KSNSKLGYVVKLLLEEQ 375
            LL  + +  K EE+ ++++ +E      LG +  +L++ +
Sbjct: 543 VLLVALAKEDKCEEIEEVIQDMELLCRMNLGIISTMLIKAR 583



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 42/252 (16%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R  P+  + +++  G + ++   L+ +E + A    P       +L  +GRA++    + 
Sbjct: 152 RASPDEVAFVVRAVGES-SWRRALDAFEWL-ARSSAPASRAVAVVLGVLGRARQDSIAEE 209

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGR------ARYGEDT--------------------- 210
           ++      G +     + +++  Y R      AR   DT                     
Sbjct: 210 VFLRFAGEGATVQ--VFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARS 267

Query: 211 ----------LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
                     L +  E+++ G++  V  YNTL++ C+     ++A  +FEDM +SE C+P
Sbjct: 268 KSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASE-CRP 326

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D WT+++M+++    GK  EAE +F E++E GF P+     SL+  + K    D V    
Sbjct: 327 DLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTC 386

Query: 321 NRLPELGITPDD 332
            +L + G   ++
Sbjct: 387 EQLVKAGFKKNE 398



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 112/256 (43%), Gaps = 13/256 (5%)

Query: 159  YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            +N L+     +    + + ++  M   G  P  ++   ++RA       ++   V  E++
Sbjct: 783  WNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQ 842

Query: 219  EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            +   ++S +    LL   A  G   E  +I+  MK++    P+   + SMI++     + 
Sbjct: 843  DMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAA-GYLPNMHLYRSMISLLCHHNRF 901

Query: 279  SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
             + E M  EM  AGF+P+L +L +L+  Y  A   D   +    + E G+ PD+     L
Sbjct: 902  RDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTL 961

Query: 339  LNVMTQT--PKE------ELGK--LVECVEKSNSKLGYVVKLLLEEQ--DIEGDFKKEAT 386
            + +  ++  P+E      E+GK  L   ++   S L    K  L EQ   I  + + ++ 
Sbjct: 962  IVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSY 1021

Query: 387  ELFNSISKDVKKAYCN 402
            +L  SI   + K Y N
Sbjct: 1022 QLNRSIYHMMMKIYRN 1037


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 121/237 (51%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L D  RN   R D   ++TL+       N +G + V+E+M+A   +P++ TYN ++   G
Sbjct: 284 LLDMVRNSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYG 343

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R     + + ++ E+   G SP+  TY SLL A+ R R  E    VY++M++ G      
Sbjct: 344 RCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEM 403

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YNT++ M    G  D A ++++DMK      PD+ T++ +I       +  EA A+ +E
Sbjct: 404 TYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSE 463

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           ML+ G +P L   ++LI  Y KA + ++     + +   G  PD+     +L+V+ +
Sbjct: 464 MLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLR 520



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 198/425 (46%), Gaps = 33/425 (7%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++++   +++++K+Y    ++   + VY+ +K  G++P+  TYN L+    R +RP +  
Sbjct: 923  FKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGY 982

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++ ++M + GL P  +TY SL+ A+G+ +  E    ++ E+  KG++L  + Y+T++ + 
Sbjct: 983  SLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             D G   +A ++ + MK++   +P   T   ++   S  G   EAE + + +     E  
Sbjct: 1043 RDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELT 1101

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMT-QTPKEELGK 352
                +S+I  Y    R+ D    + RL E+   G+ PD R   C +   +    K E+  
Sbjct: 1102 TLPYSSVIDAY---LRSKDYKSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKSEVML 1158

Query: 353  LVECVEKSNSK-----LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDL 407
            L++ ++          LG   +LL+ E  ++G F+K       SI  +    + N L++L
Sbjct: 1159 LLKALQDIGFDIPIRLLGGRPELLVSE--VDGCFEK-----LKSIEDNAALNFANALLNL 1211

Query: 408  CVNLNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 466
                 L   +  + +L +   +++ D+   +   W    + LS GAAL A          
Sbjct: 1212 LWAFELRATSSWVFQLAIKRGIFSLDVFRVADKDWGADFRRLSGGAALDA---------- 1261

Query: 467  ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAA 526
            +LE   E P  + + TG    +Y+   L    ++ L E+ +PF     + G  +    + 
Sbjct: 1262 SLEGYPESPKSVVLITGTA--EYNGVSLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSL 1319

Query: 527  KSWLE 531
            + WL+
Sbjct: 1320 RMWLK 1324



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 3/229 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +I+ YG    +    +V   ++  G  P++ T+N+L+          + + I+  M 
Sbjct: 755 YTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMM 814

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G SP   +   LL A       E+   V  E+++ G ++S +    +L   A  G   
Sbjct: 815 RDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTS 302
           E  +I+  MK++    P    +  MI +  C+GK V +AE M +EM EA F+  L +  S
Sbjct: 875 EVNKIYSSMKAA-GYLPTIRLYRMMIELL-CKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
           +++ Y   +     V+   R+ E G+ PD+     L+ +  +  + E G
Sbjct: 933 MLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEG 981



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 33/177 (18%)

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
           T+Y TLL  C    +  EA ++F +++ S  C+P      SM+ +    G    A  + N
Sbjct: 682 TMYETLLHCCVANEHYAEASQVFSELRLS-GCEPSESVCKSMVVVYCKLGFPETAYQVVN 740

Query: 287 EMLEAGFE----PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF-------- 334
           +    GF     P   + T +I+ YGK +        +  L + G TPD +         
Sbjct: 741 QAETKGFHFACSP---MYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAY 797

Query: 335 --CGC------LLNVMTQ---TPK-EELGKLVE--CVEKSNSKLGYVVKLLLEEQDI 377
             CGC      + N M +   +P  E + KL+   CV+    +L  VV+   E QD+
Sbjct: 798 AECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVE---ELQDM 851



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/122 (18%), Positives = 63/122 (51%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            +E A  L++   ++  ++D + + T++K+   +G+      + + MK  G++P + T + 
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHL 1072

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            L+ +   +  P + + +   + +  +      Y+S++ AY R++  +  +    EMK++G
Sbjct: 1073 LMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPYSSVIDAYLRSKDYKSGIERLLEMKKEG 1132

Query: 222  MQ 223
            ++
Sbjct: 1133 LE 1134


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 191/437 (43%), Gaps = 74/437 (16%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  ++A  +Y   +      +   ++TLI +YG +G ++  L V E+MK   ++P   
Sbjct: 338 KCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTR 397

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+     + +  +   +Y++M  +   PN  TY +L+ A+ +       L+V++EM
Sbjct: 398 TFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEM 457

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG + SV  Y++L++ C   G    A ++FE+M+  E C P+  +++S+IT C+   +
Sbjct: 458 VQKGCERSVITYSSLISACEKAGEWKLALQLFEEMR-GEGCVPNVISYNSLITACAQGAQ 516

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL----GITPDDR 333
             +A  +F +M   G  P++   T+LIQ Y   +R     RAL    E+       PD  
Sbjct: 517 WEKAAEVFEQMQRQGCRPDVVSYTALIQAY---ERGGQWRRALAAFEEMIRARPCAPDSI 573

Query: 334 FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
               +++V+ +T                  +G+               +++A  LF    
Sbjct: 574 VYNTIIDVLWET-----------------GVGWA--------------QRKAASLF---- 598

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 453
              ++A    LI            C     G +LE+              +L S + G A
Sbjct: 599 ---RQASAEGLIR-----------CHSHAAGGSLEL--------------NLHSTTPGVA 630

Query: 454 LTALHIWINDLSKAL--ESGEEFPPLLGINTGHGKHKYSDKGLA-SVFESHLKELNAPFH 510
           L +LH W++DL   L  E  E  P  + I  G GK K +   +      + L+ L +PF 
Sbjct: 631 LLSLHCWLHDLLAKLQAEGPEALPDKICIIAGKGKSKDAPHSIIKETVGALLRSLRSPFE 690

Query: 511 DSPDKVGWFLTTEAAAK 527
           ++PD        EAA K
Sbjct: 691 EAPDSTPHVGRLEAAGK 707


>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
 gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
          Length = 822

 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 146/302 (48%), Gaps = 8/302 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           V+ A GL+     +KW   P+A  +  LI  +G AG +   +N+ ++M    + P+  TY
Sbjct: 159 VDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTY 216

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           NNL++  G +    Q   + K+MTDNG+ P+  T+  +L AY   R     LS +  MK 
Sbjct: 217 NNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG 276

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKV 278
             ++   T +N ++   + +G + +A ++F  M+     C+PD  TF+S++ + S RG++
Sbjct: 277 AKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEI 336

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
               A+F  ML  G +PN+    +L+  Y     +++ +     +   GI PD      L
Sbjct: 337 ENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSL 396

Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKDV 396
           LN   ++ +    K V  + +   +   VV    L++     G F  EA E+F  + +D 
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQDG 455

Query: 397 KK 398
            K
Sbjct: 456 TK 457



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 138/321 (42%), Gaps = 74/321 (23%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  R G +E    +++    E  + +  +++ L+  Y   G  +  L+V+ ++K  G+ P
Sbjct: 330 YSVR-GEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVP 388

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++++Y +LL++ GR+++P + K ++  M      PN  TY +L+ AYG   +  + + ++
Sbjct: 389 DVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIF 448

Query: 215 REMKEKGMQLSVTLYNTLLAMCA-----------------------------------DV 239
           R+M++ G + +V    TLLA C+                                   + 
Sbjct: 449 RQMEQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINA 508

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR------------------------ 275
              ++A  +++ M+  +  + DS TF+ +I+  SCR                        
Sbjct: 509 AELEKAIALYQTMR-KKKVKADSVTFTILIS-GSCRMSKYPEAISYLKEMEDLSIPLTKE 566

Query: 276 ------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
                       G+V+EAE++FN+M  AG +P++   TS++  Y  +++          +
Sbjct: 567 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLEM 626

Query: 324 PELGITPDDRFCGCLLNVMTQ 344
              GI PD   C  L+    +
Sbjct: 627 EANGIEPDSIACSALMRAFNK 647



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 104/226 (46%), Gaps = 3/226 (1%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + ++  Y +   +   L+ +E MK   V+P+  T+N ++  + +  +  Q   ++  M D
Sbjct: 252 NIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRD 311

Query: 185 NGLS--PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                 P+  T+ S++  Y      E+  +V+  M  +G++ ++  YN L+   A  G +
Sbjct: 312 KRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMS 371

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           + A  +F D+K +    PD  +++S++       +  +A+ +F  M +   +PN+    +
Sbjct: 372 ENALSVFGDIKRN-GIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNA 430

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           LI  YG      + V    ++ + G  P+      LL   +++ K+
Sbjct: 431 LIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKK 476



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/212 (18%), Positives = 92/212 (43%), Gaps = 1/212 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            +S+++  Y   G      +++ +MK  G KP++I Y ++L     +++  +   ++ EM
Sbjct: 567 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLEM 626

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             NG+ P+    ++L+RA+ +     +   +   M+EK +  +  ++  + + C  +   
Sbjct: 627 EANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEVPFTGAVFFEIFSACNTLQEW 686

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A ++ + M           T + M+ +    GKV     +F +++ +G E N      
Sbjct: 687 KRAIDLIQMMDPYLPSLSIGLT-NQMLYLFGKSGKVEAMMKLFYKIIASGVEINFKTYAI 745

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           L++           +  L  + + GI P ++ 
Sbjct: 746 LLEHLLAVGNWRKYIEVLEWMSDAGIQPSNQM 777



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           A++    ++  A+++ I  Y  A   +  + +Y+ M+   VK + +T+  L+    R  +
Sbjct: 486 AQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSK 545

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
             +  +  KEM D  +      Y+S+L AY +     +  S++ +MK  G +  V  Y +
Sbjct: 546 YPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTS 605

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-- 289
           +L          +A E+F +M+++   +PDS   S+++   +  G+ S    + + M   
Sbjct: 606 MLHAYNASEKWGKACELFLEMEAN-GIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREK 664

Query: 290 EAGFEPNLFV-LTSLIQCYGKAQRTDDVVRALN-RLPELGI 328
           E  F   +F  + S      + +R  D+++ ++  LP L I
Sbjct: 665 EVPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSI 705



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 66/158 (41%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  +E A  LY   R +K + D   F+ LI        +   ++  +EM+ + +      
Sbjct: 508 AAELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEV 567

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+++L    +  +  + ++I+ +M   G  P+   Y S+L AY  +        ++ EM+
Sbjct: 568 YSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLEME 627

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
             G++      + L+      G     F + + M+  E
Sbjct: 628 ANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKE 665


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 121/260 (46%), Gaps = 36/260 (13%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL D  ++     D   ++TLI        ++    V+EEMKA G  P+ +TYN LLD  
Sbjct: 277 GLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVY 336

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           G+++RP +   + KEM  +G +P+  TY SL+ AY R    ++ + +  +M +KG++  V
Sbjct: 337 GKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDV 396

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM------------------ 268
             Y TLL+     G  D A ++FE+M+ +  CQP+  TF+++                  
Sbjct: 397 FTYTTLLSGFEKTGKDDYAMKVFEEMRVA-GCQPNICTFNALIKMHGNRGNFVEMMKVFE 455

Query: 269 -ITICSC----------------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
            I IC C                 G  SE   +F EM  AGF P      +LI  Y +  
Sbjct: 456 EIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 515

Query: 312 RTDDVVRALNRLPELGITPD 331
             D  +    R+ + G+TPD
Sbjct: 516 FFDQAMAIYRRMLDAGVTPD 535



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 120/234 (51%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  +++  R    + +   F+ LIK++G  GNF   + V+EE+K     P+++
Sbjct: 408 KTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIV 467

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM   G  P  +T+ +L+ AY R  + +  +++YR M
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM 527

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+   ++ YN +LA  A  G  +++ ++  +MK    C+P+  T+ S++   +   +
Sbjct: 528 LDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGR-CKPNELTYCSLLHAYANGKE 586

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V    A+  E+     EP   +L +L+  Y K+    +  RA   L E G +PD
Sbjct: 587 VERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPD 640



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 40/306 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A  L    RN+   ID  A+++LI  Y + G +   + V+++++  G +P +I
Sbjct: 197 KEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLI 256

Query: 158 TYNNLLDTMGRAKRPW------------------------------------QVKTIYKE 181
           TYN +L+  G+   PW                                    +   +++E
Sbjct: 257 TYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEE 316

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G SP+  TY +LL  YG++R   + + V +EM+  G   S+  YN+L++  A  G 
Sbjct: 317 MKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGL 376

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            DEA E+   M   +  +PD +T++++++     GK   A  +F EM  AG +PN+    
Sbjct: 377 LDEAMELKSQM-VKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFN 435

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           +LI+ +G      ++++    +      PD      LL V  Q     +   V  V K  
Sbjct: 436 ALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNG---MDSEVSGVFKEM 492

Query: 362 SKLGYV 367
            + G+V
Sbjct: 493 KRAGFV 498



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 5/218 (2%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+P A    TL+ +Y  +         + E++  G  P++ T N ++   GR +   +  
Sbjct: 602 IEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTN 661

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I   + D+G +P+  TY SL+  Y R  + E +  + RE+  KGM+  +  +NT++   
Sbjct: 662 EILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAY 721

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   EA  IF +MK      PD  T+++ I   +      EA  +   M++   +PN
Sbjct: 722 CRNGRMKEASRIFAEMKDF-GLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPN 780

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPDD 332
                SLI  + K  R D+    ++ L  L   +T D+
Sbjct: 781 QNTYNSLIDWFCKLNRRDEANSFISNLRNLDPSVTKDE 818



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG-RARYGEDTLSVYREMKEK 220
           ++  +G+  R     ++  ++ ++G+  +   Y SL+ AY    RY E  + V+++++E+
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVM-VFKKLEEE 249

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G + ++  YN +L +   +G          D   S    PD +T++++I+ C       E
Sbjct: 250 GCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEE 309

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           A  +F EM  AGF P+     +L+  YGK++R  + +  L  +   G  P
Sbjct: 310 AAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAP 359



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 103/235 (43%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  + A  +Y R  +     D + ++ ++      G ++    V  EMK    KPN 
Sbjct: 512 SRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNE 571

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +LL      K   ++  + +E+    + P      +L+  Y ++    +T   + E
Sbjct: 572 LTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLE 631

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++E+G    +T  N ++++        +  EI   +K S    P   T++S++ + S   
Sbjct: 632 LREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDS-GFTPSLTTYNSLMYMYSRTE 690

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              ++E +  E++  G +P++    ++I  Y +  R  +  R    + + G+ PD
Sbjct: 691 HFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPD 745



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 78/157 (49%), Gaps = 1/157 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R + +  D    + ++ +YG          +   +K  G  P++ TYN+L+    R +  
Sbjct: 633 REQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHF 692

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + + I +E+   G+ P+  ++ +++ AY R    ++   ++ EMK+ G+   V  YNT 
Sbjct: 693 EKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTF 752

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +A  A      EA ++ + M  +E C+P+  T++S+I
Sbjct: 753 IASYASDSMFIEAIDVVKYMIKNE-CKPNQNTYNSLI 788


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 121/260 (46%), Gaps = 36/260 (13%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL D  ++     D   ++TLI        ++    V+EEMKA G  P+ +TYN LLD  
Sbjct: 277 GLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVY 336

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           G+++RP +   + KEM  +G +P+  TY SL+ AY R    ++ + +  +M +KG++  V
Sbjct: 337 GKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDV 396

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM------------------ 268
             Y TLL+     G  D A ++FE+M+ +  CQP+  TF+++                  
Sbjct: 397 FTYTTLLSGFEKTGKDDYAMKVFEEMRVA-GCQPNICTFNALIKMHGNRGNFVEMMKVFE 455

Query: 269 -ITICSC----------------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
            I IC C                 G  SE   +F EM  AGF P      +LI  Y +  
Sbjct: 456 EIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 515

Query: 312 RTDDVVRALNRLPELGITPD 331
             D  +    R+ + G+TPD
Sbjct: 516 FFDQAMAIYRRMLDAGVTPD 535



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 120/234 (51%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  +++  R    + +   F+ LIK++G  GNF   + V+EE+K     P+++
Sbjct: 408 KTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIV 467

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM   G  P  +T+ +L+ AY R  + +  +++YR M
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM 527

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+   ++ YN +LA  A  G  +++ ++  +MK    C+P+  T+ S++   +   +
Sbjct: 528 LDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGR-CKPNELTYCSLLHAYANGKE 586

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V    A+  E+     EP   +L +L+  Y K+    +  RA   L E G +PD
Sbjct: 587 VERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPD 640



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 40/306 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A  L    RN+   ID  A+++LI  Y + G +   + V+++++  G +P +I
Sbjct: 197 KEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLI 256

Query: 158 TYNNLLDTMGRAKRPW------------------------------------QVKTIYKE 181
           TYN +L+  G+   PW                                    +   +++E
Sbjct: 257 TYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEE 316

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G SP+  TY +LL  YG++R   + + V +EM+  G   S+  YN+L++  A  G 
Sbjct: 317 MKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGL 376

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            DEA E+   M   +  +PD +T++++++     GK   A  +F EM  AG +PN+    
Sbjct: 377 LDEAMELKSQM-VKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFN 435

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           +LI+ +G      ++++    +      PD      LL V  Q     +   V  V K  
Sbjct: 436 ALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNG---MDSEVSGVFKEM 492

Query: 362 SKLGYV 367
            + G+V
Sbjct: 493 KRAGFV 498



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 5/218 (2%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+P A    TL+ +Y  +         + E++  G  P++ T N ++   GR +   +  
Sbjct: 602 IEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTN 661

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I   + D+G +P+  TY SL+  Y R  + E +  + RE+  KGM+  +  +NT++   
Sbjct: 662 EILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAY 721

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   EA  IF +MK      PD  T+++ I   +      EA  +   M++ G +PN
Sbjct: 722 CRNGRMKEASRIFAEMKDF-GLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPN 780

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPDD 332
                SLI  + K  R D+    ++ L  L   +T D+
Sbjct: 781 QNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVTKDE 818



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 2/170 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG-RARYGEDTLSVYREMKEK 220
           ++  +G+  R     ++  ++ ++G+  +   Y SL+ AY    RY E  + V+++++E+
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVM-VFKKLEEE 249

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G + ++  YN +L +   +G          D   S    PD +T++++I+ C       E
Sbjct: 250 GCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEE 309

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           A  +F EM  AGF P+     +L+  YGK++R  + +  L  +   G  P
Sbjct: 310 AAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAP 359



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 103/235 (43%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  + A  +Y R  +     D + ++ ++      G ++    V  EMK    KPN 
Sbjct: 512 SRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNE 571

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +LL      K   ++  + +E+    + P      +L+  Y ++    +T   + E
Sbjct: 572 LTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLE 631

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++E+G    +T  N ++++        +  EI   +K S    P   T++S++ + S   
Sbjct: 632 LREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDS-GFTPSLTTYNSLMYMYSRTE 690

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              ++E +  E++  G +P++    ++I  Y +  R  +  R    + + G+ PD
Sbjct: 691 HFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPD 745



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 1/157 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R + +  D    + ++ +YG          +   +K  G  P++ TYN+L+    R +  
Sbjct: 633 REQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHF 692

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + + I +E+   G+ P+  ++ +++ AY R    ++   ++ EMK+ G+   V  YNT 
Sbjct: 693 EKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTF 752

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +A  A      EA ++ + M  +  C+P+  T++S+I
Sbjct: 753 IASYASDSMFIEAIDVVKYMIKN-GCKPNQNTYNSLI 788


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 1/221 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L++++G AG +   L++ +EM+     P+ +TYN L+    RA    +   +   MT
Sbjct: 318 YNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMT 377

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +NG+ PN  TY +++ AYGRA   +  LS+Y +MKE G   +V  YN +L M      ++
Sbjct: 378 ENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSE 437

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           E  +I  DMK  + C P+  T+++M+++C  +G     + +F EM   GFEP+     +L
Sbjct: 438 EMMKILCDMK-VDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTL 496

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           I   G+     D  +  + + E G TP       LLN + +
Sbjct: 497 ITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALAR 537



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 129/259 (49%), Gaps = 3/259 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R     +A  L+D    + + +D  A++T++  Y   G ++  + ++E+M   G+ P ++
Sbjct: 186 RESQHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLV 245

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +LD  G+  R W ++  +  EM   GL  +  T ++++ A GR    ++    +  
Sbjct: 246 TYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVG 305

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K +G       YN LL +    G   EA  I ++M+ + NC PD+ T++ ++      G
Sbjct: 306 LKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDN-NCPPDAVTYNELVAAYVRAG 364

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              E  A+ + M E G +PN    T++I  YG+A + D  +   +++ E G  P+     
Sbjct: 365 FYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYN 424

Query: 337 CLLNVM-TQTPKEELGKLV 354
            +L ++  ++  EE+ K++
Sbjct: 425 AILGMLGKKSQSEEMMKIL 443



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 113/217 (52%), Gaps = 3/217 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  +     +     D   ++ L+  Y  AG ++    + + M   G+KPN +
Sbjct: 327 KAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAV 386

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  +++  GRA +  +  ++Y +M ++G +PN  TY ++L   G+    E+ + +  +M
Sbjct: 387 TYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDM 446

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G   +   +NT+L+MC + G       +F++MKS    +PD  TF+++IT     G 
Sbjct: 447 KVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSC-GFEPDRDTFNTLITASGRCGS 505

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             +AE +++EMLEAGF P++    +L+     A+R D
Sbjct: 506 DIDAEKIYDEMLEAGFTPSVATYNALLNAL--ARRGD 540



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 7/215 (3%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++T++ + G  G       V++EMK+ G +P+  T+N L+   GR       + I
Sbjct: 453 PNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKI 512

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y EM + G +P+  TY +LL A  R        SV ++MK KG + S T Y+ +L   A 
Sbjct: 513 YDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAK 572

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS--CRGKVSEAEAMFNEMLEAGFEPN 296
            GY      I +D+    +  P SW     + + +  CR  ++  E  F  + + G++P+
Sbjct: 573 GGYVKGINRIEKDIYDG-HIFP-SWMLLRTLILANFKCRA-LAGMERAFQALQKHGYKPD 629

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           L V  S++  + +    D     ++ + E G+ PD
Sbjct: 630 LVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPD 664



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 100/207 (48%), Gaps = 10/207 (4%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D + F+TLI   G  G+      +Y+EM   G  P++ TYN LL+ + R       +++ 
Sbjct: 489 DRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVI 548

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---C 236
           K+M + G  P+  +Y+ +L +Y +  Y +    + +++ +  +  S  L  TL+     C
Sbjct: 549 KDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKC 608

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             +   + AF+  +        +PD   F+SM+++ S +     A  + + + E G +P+
Sbjct: 609 RALAGMERAFQALQ----KHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPD 664

Query: 297 LFVLTSLIQCY---GKAQRTDDVVRAL 320
           L    SL+  Y   G+  + ++++R L
Sbjct: 665 LVTYNSLMDLYARGGECWKAEEILREL 691



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 111/233 (47%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+   A  +YD      +      ++ L+      G++    +V ++MK  G KP+  
Sbjct: 502 RCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSET 561

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+ +L++  +      +  I K++ D  + P+W    +L+ A  + R        ++ +
Sbjct: 562 SYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQAL 621

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +  + ++N++L+M +     D A EI   ++     QPD  T++S++ + +  G+
Sbjct: 622 QKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQEC-GLQPDLVTYNSLMDLYARGGE 680

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             +AE +  E+  +G + +L    ++I+ + +     + +R L+ +   GI P
Sbjct: 681 CWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRP 733



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 77/153 (50%), Gaps = 1/153 (0%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++ D   F++++ ++      D    +   ++  G++P+++TYN+L+D   R    W+ +
Sbjct: 626 YKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAE 685

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I +E+ ++G   +  +Y ++++ + R     + L    EM  +G++  +  YNT +   
Sbjct: 686 EILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGY 745

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           A  G   E  E+   M +  +C+P+  T+  ++
Sbjct: 746 AAKGMFAEIDEVLSYM-TKHDCRPNELTYKIVV 777


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/472 (21%), Positives = 205/472 (43%), Gaps = 40/472 (8%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +R GN+E A  +Y + +   +      F  L+ LY           + +++K  G++ ++
Sbjct: 762  SRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDI 821

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
              YN+++    +         ++K M + G SP+  T+ +L+  Y R +  ++  ++ RE
Sbjct: 822  DIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLRE 881

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            M + G   +++ Y TL++    +   ++A  +F+ +  +  C+PD+  ++ MI +    G
Sbjct: 882  MIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAET-GCKPDATAYNVMINVYRKAG 940

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +  + E +  +M   GFEP+L  +  L+  YGK   T      L  LPE+G++PD     
Sbjct: 941  EHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYT 1000

Query: 337  CLLNVMTQTPKEELGKLV-------ECVEKSNSKLGYVV-----------KLLLEEQDIE 378
             ++N      K+ L  ++        CV  ++  +   V            L+L +   E
Sbjct: 1001 SIINSHLNN-KDYLSAVIWLRKMTDACVRPTHVTITCFVGAASVCERSSHALMLLKALSE 1059

Query: 379  GDFK---KEATELFNSISKDVKKAY--------------CNCLIDLCVNLNLLENACKLL 421
              F    +  TE    + +D++  +               N L+DL         A  + 
Sbjct: 1060 AGFSLPLRLMTECTPKVVQDMQDIFDQLQESGPEACQGVVNVLMDLLWAFRQCATAALVF 1119

Query: 422  ELGLTLEVYTDIQSRSPTQ-WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGI 480
             + +   +YT + +R   + W    + LS GA+L AL +W++ +  A   G   PP   I
Sbjct: 1120 AVAIESNIYTQVLARVKDRNWGADFRRLSPGASLVALILWLDQMQDASLQGSPVPP-KSI 1178

Query: 481  NTGHGKHKYSDKG-LASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 531
                G  K +++  + +  ++HL ++ +PF  S  + G  +    A   WL+
Sbjct: 1179 QIDIGSSKLNNQASVRNTIKAHLWQMGSPFLPSKTRAGVLVAKSHALCMWLK 1230



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 38/273 (13%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +A+S L+  Y   GNF+      + M A G++PN    N +L+  GRA +  ++   ++ 
Sbjct: 682 SAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQR 741

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE---------------------- 219
           + + G+SPN  T+  +  A+ R    E+  S+YR+MKE                      
Sbjct: 742 LPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETV 801

Query: 220 -------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
                         G++L + +YN ++++ + +G    A  +F+ M+    C PD+ TF+
Sbjct: 802 EIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEI-GCSPDATTFN 860

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           ++I + S    V EA+A+  EM++ G  PN+   T+LI  YG+ Q  +D       + E 
Sbjct: 861 TLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAET 920

Query: 327 GITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
           G  PD      ++NV  +  +    K+ E +E+
Sbjct: 921 GCKPDATAYNVMINVYRKAGEHR--KIEEIIEQ 951



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 114/246 (46%), Gaps = 2/246 (0%)

Query: 97  TRAGNVE-MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           TR G  E +A  L         R D   ++TLI            + ++EEM+  G  P+
Sbjct: 171 TRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPD 230

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TYN ++   GRA R     +I++ M + G +P+  TY S+L A+ R    E+   +  
Sbjct: 231 IWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRG 290

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M++         YNT++ M    G   +A E++  MK    C PDS TF+ +I      
Sbjct: 291 MMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRC-PDSVTFTVLIDTLGKA 349

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G V+EA AMF +ML++   P L   +++I  Y KA    D     + +   G+ PD    
Sbjct: 350 GFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAY 409

Query: 336 GCLLNV 341
             +L+V
Sbjct: 410 SVMLDV 415



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 3/227 (1%)

Query: 120 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DP+   ++ +I +YG AG  +   +++  M+  G  P+ +TYN++L    R  R  +V+ 
Sbjct: 228 DPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVER 287

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           I   M D   S +  TY +++  YG+A        +Y +MKE+G       +  L+    
Sbjct: 288 IRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLG 347

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G+ +EA  +FEDM  S+  +P    FS+MI   +     ++AE  ++ ML AG  P+L
Sbjct: 348 KAGFVNEAAAMFEDMLKSQ-VRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDL 406

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
              + ++  + KA   +  +     +   G+ P+      ++ V  Q
Sbjct: 407 LAYSVMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQ 453



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 4/218 (1%)

Query: 103 EMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           + A  LY+     +W   +P   + ++ + G A        +++  ++  +   +  YN+
Sbjct: 72  QRALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELFDRAES-SIGNCVQVYNS 130

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS-VYREMKEK 220
           L+    R      V+ +   M D G  P+  T+  +++A  R    E   S + +++   
Sbjct: 131 LMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAA 190

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++     YNTL++ C+      +A  IFE+M+  + C PD WT+++MI++    G+V  
Sbjct: 191 GLRPDTITYNTLISACSLNNRLSDAILIFEEMQR-QGCDPDIWTYNAMISVYGRAGRVEA 249

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           A ++F  M E GF P+     S++  + +  R ++V R
Sbjct: 250 ASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVER 287



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 94/194 (48%), Gaps = 1/194 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G +E    +    R+ +   D   ++T+I +YG AG       +Y +MK  G  P+ 
Sbjct: 277 ARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDS 336

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+  L+DT+G+A    +   ++++M  + + P    +++++ AY +A    D    Y  
Sbjct: 337 VTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSC 396

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G++  +  Y+ +L +    G  ++   +++ M  S   +P+   ++ M+ +   + 
Sbjct: 397 MLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGS-GLKPELSVYAIMVRVFYQKS 455

Query: 277 KVSEAEAMFNEMLE 290
            V+E E +  EM++
Sbjct: 456 SVAEIENLSKEMVQ 469



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 90/217 (41%), Gaps = 45/217 (20%)

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           + +++ +YG+ +  ++   V+R++++ G   + + Y+ LL+  A+ G  + A    ++M 
Sbjct: 649 HVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNM- 707

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
                                              + AG +PN      +++ +G+A + 
Sbjct: 708 -----------------------------------VAAGLQPNATCANYVLEAFGRAGKA 732

Query: 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--ECVEKSNSKLGYVVKLL 371
            ++     RLPE+GI+P+ R    + +  ++    E  + +  +  E   S    V K L
Sbjct: 733 KEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKAL 792

Query: 372 LEEQDIEGDFKKEATEL-FNSISKDVKKAYCNCLIDL 407
           L        + +E  E+    + KD+KKA     ID+
Sbjct: 793 L------ALYSRETVEIDAEELVKDIKKAGLELDIDI 823


>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
 gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 8/299 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           V+ A GL+     +KW   P+A  +  LI  +G AG +   +N+ ++M    + P+  TY
Sbjct: 159 VDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTY 216

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           NNL++  G +    +   + K+MTDNG+ P+  T+  +L AY   R     LS +  MK 
Sbjct: 217 NNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG 276

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKV 278
             ++   T +N ++   + +G + +A ++F  M+     C+PD  TF+S++ + S +G++
Sbjct: 277 AKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEI 336

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
               A+F  M+  G +PN+    +L+  Y     +   +  L  + + GI PD     CL
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396

Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKD 395
           LN   ++ +    K V  + +   +   VV    L++     G F  EA E+F  + +D
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQD 454



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 141/356 (39%), Gaps = 110/356 (30%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           ++ G    A  L++  R ++    P+   F++++ LY   G  + C  V+E M A G+KP
Sbjct: 294 SKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKP 353

Query: 155 NMITYNNL-----------------------------------LDTMGRAKRPWQVKTIY 179
           N+++YN L                                   L++ GR+++P + K ++
Sbjct: 354 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVF 413

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA-- 237
             M      PN  TY +L+ AYG   +  + + ++R+M++ G++ +V    TLLA C+  
Sbjct: 414 LMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 473

Query: 238 ---------------------------------DVGYTDEAFEIFEDMKSSENCQPDSWT 264
                                            +    ++A  +++ M+  +  + DS T
Sbjct: 474 KKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMR-KKKVKADSVT 532

Query: 265 FSSMITICSCR------------------------------------GKVSEAEAMFNEM 288
           F+ +I+  SCR                                    G+V+EAE++FN+M
Sbjct: 533 FTILIS-GSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM 591

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             AG EP++   TS++  Y  +++          +   GI PD   C  L+    +
Sbjct: 592 KMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNK 647



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 102/226 (45%), Gaps = 3/226 (1%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + ++  Y +   +   L+ +E MK   V+P+  T+N ++  + +  +  Q   ++  M +
Sbjct: 252 NIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMRE 311

Query: 185 NGLS--PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                 P+  T+ S++  Y      E+  +V+  M  +G++ ++  YN L+   A  G +
Sbjct: 312 KRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMS 371

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A  +  D+K +    PD  +++ ++       +  +A+ +F  M +   +PN+    +
Sbjct: 372 GTALSVLGDIKQN-GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNA 430

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           LI  YG      + V    ++ + GI P+      LL   +++ K+
Sbjct: 431 LIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 476



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/212 (17%), Positives = 91/212 (42%), Gaps = 1/212 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            +S+++  Y   G      +++ +MK  G +P++I Y ++L     +++  +   ++ EM
Sbjct: 567 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEM 626

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             NG+ P+    ++L+RA+ +     +   +   M+EK +  +  ++  + + C  +   
Sbjct: 627 EANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEW 686

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A ++ + M           T + M+ +    GKV     +F +++ +G   NL     
Sbjct: 687 KRAIDLIQMMDPYLPSLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAI 745

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           L++           +  L  +   GI P ++ 
Sbjct: 746 LLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQM 777



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           A++    ++  A+++ I  Y  A   +  + +Y+ M+   VK + +T+  L+    R  +
Sbjct: 486 AQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSK 545

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
             +  +  KEM D  +      Y+S+L AY +     +  S++ +MK  G +  V  Y +
Sbjct: 546 YPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTS 605

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           +L          +A E+F +M+++   +PDS   S+++   +  G+ S    + + M E 
Sbjct: 606 MLHAYNASEKWGKACELFLEMEAN-GIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREK 664

Query: 292 GFE---PNLFVLTSLIQCYGKAQRTDDVVRALN-RLPELGI 328
                    F + S      + +R  D+++ ++  LP L I
Sbjct: 665 EIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSI 705



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 66/158 (41%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  +E A  LY   R +K + D   F+ LI        +   ++  +EM+ + +      
Sbjct: 508 AAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEV 567

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+++L    +  +  + ++I+ +M   G  P+   Y S+L AY  +        ++ EM+
Sbjct: 568 YSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEME 627

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
             G++      + L+      G     F + + M+  E
Sbjct: 628 ANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKE 665


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 36/243 (14%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI        ++  L+++EE+K  G +P+ +TYN LLD  G+++RP +   + K+M 
Sbjct: 253 YNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQME 312

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            N   P+  TY SL+ AY R    ED L + R+M +KG++  V  Y TLL+   + G  +
Sbjct: 313 SNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEE 372

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV------------------------- 278
            A E+FE+M+    C+P+  TF+++I +   RGK                          
Sbjct: 373 LAMEVFEEMRKV-GCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTL 431

Query: 279 ----------SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
                     SE   +F EM  + F P      +LI  YG+    D  + A  R+ E G+
Sbjct: 432 LAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGV 491

Query: 329 TPD 331
           +PD
Sbjct: 492 SPD 494



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 124/243 (51%), Gaps = 1/243 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG  E+A  +++  R    + +   F+ LIK+YG  G F+  + V++E+K     P+++T
Sbjct: 368 AGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVT 427

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N LL   G+     +V  +++EM  +  +P  +T+ +L+ AYGR    +  ++ Y+ M 
Sbjct: 428 WNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRML 487

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E G+   ++ YN +LA  A  G  +++ ++  +MK    C+P+  T+SS++   +   +V
Sbjct: 488 EAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDG-GCKPNEVTYSSLLHAYANGREV 546

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
               A+  E+     + +  +L +L+    K     +  RA     + GI+PD      +
Sbjct: 547 ERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAM 606

Query: 339 LNV 341
           L++
Sbjct: 607 LSI 609



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 126/283 (44%), Gaps = 37/283 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  L      + + +D   +++LI  Y     +   L V+ +MK +G +P +I
Sbjct: 156 KTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLI 215

Query: 158 TYNNLLDTMGRAKRPW-----------------------------QVKTIYKEMTD---- 184
           TYN +L+  G+   PW                             +  ++Y+E  D    
Sbjct: 216 TYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEE 275

Query: 185 ---NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
               G  P+  TY +LL  YG++R  ++ + V ++M+    + SV  YN+L++     G 
Sbjct: 276 IKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGL 335

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A  +   M   +  +PD +T++++++     GK   A  +F EM + G +PN+    
Sbjct: 336 LEDALVLKRKM-VDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFN 394

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +LI+ YG   + +++V+    +     +PD      LL V  Q
Sbjct: 395 ALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQ 437



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 121/253 (47%), Gaps = 5/253 (1%)

Query: 103 EMAFGLYD--RARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           ++A  L+D  R RN++  + + +  + ++ + G  G      ++   ++A G + ++  Y
Sbjct: 123 DLALSLFDFIRTRNDRVSLLNGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGY 182

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMK 218
            +L+      K+      ++ +M + G  P   TY ++L  YG+        +++ ++MK
Sbjct: 183 TSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMK 242

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G+   +  YNTL++ C      +EA ++FE++K +   +PD+ T+++++ +     + 
Sbjct: 243 CHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVA-GFRPDAVTYNALLDVYGKSRRP 301

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            EA  +  +M    F P++    SL+  Y +    +D +    ++ + GI PD      L
Sbjct: 302 KEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTL 361

Query: 339 LNVMTQTPKEELG 351
           L+      KEEL 
Sbjct: 362 LSGFVNAGKEELA 374



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 1/183 (0%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           + E +  G+ P++ T N +L   GR K   +   I   M ++GL+ +  +Y SL+  Y R
Sbjct: 588 FLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSR 647

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
                 +  ++RE+ +KG++  V  YN ++         DEA  I E+MK      PD  
Sbjct: 648 TENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPV-PDVV 706

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+++ I   +      EA  +   M++ G +PN     S++  Y K +  D+    +  L
Sbjct: 707 TYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFVQNL 766

Query: 324 PEL 326
            +L
Sbjct: 767 GDL 769



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 36/260 (13%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE--------------------- 145
           G+++  +  ++  + + F+TLI  YG  G+FD  +  Y+                     
Sbjct: 446 GVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATL 505

Query: 146 --------------EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
                         EMK  G KPN +TY++LL      +   ++  + +E+    +  + 
Sbjct: 506 ARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHA 565

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
               +L+    +     +T   + E +++G+   VT  N +L++        +A EI   
Sbjct: 566 VLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNF 625

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M  S        +++S++ + S      ++E +F E+L+ G EP++     +I  Y +  
Sbjct: 626 MYES-GLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRND 684

Query: 312 RTDDVVRALNRLPELGITPD 331
             D+  R +  +      PD
Sbjct: 685 MMDEAKRIIEEMKVPAPVPD 704



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D    + ++ +YG          +   M   G+  ++ +YN+L+    R +   + + I+
Sbjct: 599 DVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIF 658

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +E+ D G+ P+  +Y  ++ AY R    ++   +  EMK       V  YNT +A  A  
Sbjct: 659 REILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAAD 718

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
               EA ++   M   + C+P+  T++S++
Sbjct: 719 SMFVEAIDVIRYM-IKQGCKPNHNTYNSIV 747



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 63/130 (48%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           ++++L+ +Y    NF     ++ E+   G++P++I+YN ++    R     + K I +EM
Sbjct: 637 SYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEM 696

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                 P+  TY + + AY       + + V R M ++G + +   YN+++     +   
Sbjct: 697 KVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLR 756

Query: 243 DEAFEIFEDM 252
           DEA    +++
Sbjct: 757 DEACSFVQNL 766



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 119 IDPNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+P+  S  I +Y    N   D    + EEMK     P+++TYN  +          +  
Sbjct: 666 IEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAI 725

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
            + + M   G  PN NTY S++  Y + +  ++  S  + + +   Q+S
Sbjct: 726 DVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFVQNLGDLDPQIS 774


>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 810

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 8/299 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           V+ A GL+     +KW   P+A  +  LI  +G AG +   +N+ ++M    + P+  TY
Sbjct: 159 VDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTY 216

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           NNL++  G +    +   + K+MTDNG+ P+  T+  +L AY   R     LS +  MK 
Sbjct: 217 NNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG 276

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKV 278
             ++   T +N ++   + +G + +A ++F  M+     C+PD  TF+S++ + S +G++
Sbjct: 277 AKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEI 336

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
               A+F  M+  G +PN+    +L+  Y     +   +  L  + + GI PD     CL
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396

Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKD 395
           LN   ++ +    K V  + +   +   VV    L++     G F  EA E+F  + +D
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQD 454



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 141/344 (40%), Gaps = 98/344 (28%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           ++ G    A  L++  R ++    P+   F++++ LY   G  + C  V+E M A G+KP
Sbjct: 294 SKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKP 353

Query: 155 NMITYNNL-----------------------------------LDTMGRAKRPWQVKTIY 179
           N+++YN L                                   L++ GR+++P + K ++
Sbjct: 354 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVF 413

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA-- 237
             M      PN  TY +L+ AYG   +  + + ++R+M++ G++ +V    TLLA C+  
Sbjct: 414 LMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 473

Query: 238 ---------------------------------DVGYTDEAFEIFEDMKSSENCQPDSWT 264
                                            +    ++A  +++ M+  +  + DS T
Sbjct: 474 KKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKK-VKADSVT 532

Query: 265 FSSMITICSCR------------------------GKVSEAEAMFNEMLEAGFEPNLFVL 300
           F+ +I+  SCR                        G+V+EAE++FN+M  AG EP++   
Sbjct: 533 FTILIS-GSCRMSKYPEAISYLKEMEDLSIPLTKEGQVTEAESIFNQMKMAGCEPDVIAY 591

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           TS++  Y  +++          +   GI PD   C  L+    +
Sbjct: 592 TSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNK 635



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 102/226 (45%), Gaps = 3/226 (1%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + ++  Y +   +   L+ +E MK   V+P+  T+N ++  + +  +  Q   ++  M +
Sbjct: 252 NIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMRE 311

Query: 185 NGLS--PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                 P+  T+ S++  Y      E+  +V+  M  +G++ ++  YN L+   A  G +
Sbjct: 312 KRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMS 371

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A  +  D+K +    PD  +++ ++       +  +A+ +F  M +   +PN+    +
Sbjct: 372 GTALSVLGDIKQN-GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNA 430

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           LI  YG      + V    ++ + GI P+      LL   +++ K+
Sbjct: 431 LIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 476



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/259 (18%), Positives = 102/259 (39%), Gaps = 24/259 (9%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIK------LYGTA-----------------G 135
           A  +E A  LY   R +K + D   F+ LI        Y  A                 G
Sbjct: 508 AAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEG 567

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
                 +++ +MK  G +P++I Y ++L     +++  +   ++ EM  NG+ P+    +
Sbjct: 568 QVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACS 627

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +L+RA+ +     +   +   M+EK +  +  ++  + + C  +     A ++ + M   
Sbjct: 628 ALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPY 687

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
                   T + M+ +    GKV     +F +++ +G   NL     L++          
Sbjct: 688 LPSLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRK 746

Query: 316 VVRALNRLPELGITPDDRF 334
            +  L  +   GI P ++ 
Sbjct: 747 YIEVLEWMSGAGIQPSNQM 765


>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 683

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 8/299 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           V+ A GL+     +KW   P+A  +  LI  +G AG +   +N+ ++M    + P+  TY
Sbjct: 27  VDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTY 84

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           NNL++  G +    +   + K+MTDNG+ P+  T+  +L AY   R     LS +  MK 
Sbjct: 85  NNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG 144

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKV 278
             ++   T +N ++   + +G + +A ++F  M+     C+PD  TF+S++ + S +G++
Sbjct: 145 AKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEI 204

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
               A+F  M+  G +PN+    +L+  Y     +   +  L  + + GI PD     CL
Sbjct: 205 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 264

Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKD 395
           LN   ++ +    K V  + +   +   VV    L++     G F  EA E+F  + +D
Sbjct: 265 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQD 322



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 140/351 (39%), Gaps = 110/351 (31%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           ++ G    A  L++  R ++    P+   F++++ LY   G  + C  V+E M A G+KP
Sbjct: 162 SKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKP 221

Query: 155 NMITYNNL-----------------------------------LDTMGRAKRPWQVKTIY 179
           N+++YN L                                   L++ GR+++P + K ++
Sbjct: 222 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVF 281

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA-- 237
             M      PN  TY +L+ AYG   +  + + ++R+M++ G++ +V    TLLA C+  
Sbjct: 282 LMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 341

Query: 238 ---------------------------------DVGYTDEAFEIFEDMKSSENCQPDSWT 264
                                            +    ++A  +++ M+  +  + DS T
Sbjct: 342 KKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMR-KKKVKADSVT 400

Query: 265 FSSMITICSCR------------------------------------GKVSEAEAMFNEM 288
           F+ +I+  SCR                                    G+V+EAE++FN+M
Sbjct: 401 FTILIS-GSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM 459

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             AG EP++   TS++  Y  +++          +   GI PD   C  L+
Sbjct: 460 KMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALM 510



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 102/226 (45%), Gaps = 3/226 (1%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + ++  Y +   +   L+ +E MK   V+P+  T+N ++  + +  +  Q   ++  M +
Sbjct: 120 NIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMRE 179

Query: 185 NGLS--PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                 P+  T+ S++  Y      E+  +V+  M  +G++ ++  YN L+   A  G +
Sbjct: 180 KRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMS 239

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A  +  D+K +    PD  +++ ++       +  +A+ +F  M +   +PN+    +
Sbjct: 240 GTALSVLGDIKQN-GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNA 298

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           LI  YG      + V    ++ + GI P+      LL   +++ K+
Sbjct: 299 LIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 344



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/212 (17%), Positives = 91/212 (42%), Gaps = 1/212 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            +S+++  Y   G      +++ +MK  G +P++I Y ++L     +++  +   ++ EM
Sbjct: 435 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEM 494

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             NG+ P+    ++L+RA+ +     +   +   M+EK +  +  ++  + + C  +   
Sbjct: 495 EANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEW 554

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A ++ + M           T + M+ +    GKV     +F +++ +G   NL     
Sbjct: 555 KRAIDLIQMMDPYLPSLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAI 613

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           L++           +  L  +   GI P ++ 
Sbjct: 614 LLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQM 645



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 87/214 (40%), Gaps = 36/214 (16%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           A++    ++  A+++ I  Y  A   +  + +Y+ M+   VK + +T+  L+    R  +
Sbjct: 354 AQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSK 413

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
             +  +  KEM D  +      Y+S+L AY +     +  S++ +MK  G          
Sbjct: 414 YPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAG---------- 463

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
                                     C+PD   ++SM+   +   K  +A  +F EM   
Sbjct: 464 --------------------------CEPDVIAYTSMLHAYNASEKWGKACELFLEMEAN 497

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           G EP+    ++L++ + K  +  +V   ++ + E
Sbjct: 498 GIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE 531



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 66/158 (41%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  +E A  LY   R +K + D   F+ LI        +   ++  +EM+ + +      
Sbjct: 376 AAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEV 435

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+++L    +  +  + ++I+ +M   G  P+   Y S+L AY  +        ++ EM+
Sbjct: 436 YSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEME 495

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
             G++      + L+      G     F + + M+  E
Sbjct: 496 ANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKE 533


>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
          Length = 815

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 8/299 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           V+ A GL+     +KW   P+A  +  LI  +G AG +   +N+ ++M    + P+  TY
Sbjct: 159 VDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTY 216

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           NNL++  G +    +   + K+MTDNG+ P+  T+  +L AY   R     LS +  MK 
Sbjct: 217 NNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG 276

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKV 278
             ++   T +N ++   + +G + +A ++F  M+     C+PD  TF+S++ + S +G++
Sbjct: 277 AKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEI 336

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
               A+F  M+  G +PN+    +L+  Y     +   +  L  + + GI PD     CL
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396

Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKD 395
           LN   ++ +    K V  + +   +   VV    L++     G F  EA E+F  + +D
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQD 454



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 142/356 (39%), Gaps = 110/356 (30%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           ++ G    A  L++  R ++    P+   F++++ LY   G  + C  V+E M A G+KP
Sbjct: 294 SKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKP 353

Query: 155 NMITYNNL-----------------------------------LDTMGRAKRPWQVKTIY 179
           N+++YN L                                   L++ GR+++P + K ++
Sbjct: 354 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVF 413

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA-- 237
             M      PN  TY +L+ AYG   +  + + ++R+M++ G++ +V    TLLA C+  
Sbjct: 414 LMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 473

Query: 238 ---------------------------------DVGYTDEAFEIFEDMKSSENCQPDSWT 264
                                            +    ++A  +++ M+  +  + DS T
Sbjct: 474 KKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMR-KKKVKADSVT 532

Query: 265 FSSMITICSCR------------------------------------GKVSEAEAMFNEM 288
           F+ +I+  SCR                                    G+V+EAE++FN+M
Sbjct: 533 FTILIS-GSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM 591

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             AG EP++   TS++  Y  +++       L  +   GI PD   C  L+    +
Sbjct: 592 KMAGCEPDVIAYTSMLHAYNASEKWGKACELLLEMEANGIEPDSIACSALMRAFNK 647



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 102/226 (45%), Gaps = 3/226 (1%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + ++  Y +   +   L+ +E MK   V+P+  T+N ++  + +  +  Q   ++  M +
Sbjct: 252 NIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMRE 311

Query: 185 NGLS--PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                 P+  T+ S++  Y      E+  +V+  M  +G++ ++  YN L+   A  G +
Sbjct: 312 KRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMS 371

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A  +  D+K +    PD  +++ ++       +  +A+ +F  M +   +PN+    +
Sbjct: 372 GTALSVLGDIKQN-GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNA 430

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           LI  YG      + V    ++ + GI P+      LL   +++ K+
Sbjct: 431 LIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 476



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/212 (17%), Positives = 90/212 (42%), Gaps = 1/212 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            +S+++  Y   G      +++ +MK  G +P++I Y ++L     +++  +   +  EM
Sbjct: 567 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELLLEM 626

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             NG+ P+    ++L+RA+ +     +   +   M+EK +  +  ++  + + C  +   
Sbjct: 627 EANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEW 686

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A ++ + M           T + M+ +    GKV     +F +++ +G   NL     
Sbjct: 687 KRAIDLIQMMDPYLPSLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAI 745

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           L++           +  L  +   GI P ++ 
Sbjct: 746 LLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQM 777



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           A++    ++  A+++ I  Y  A   +  + +Y+ M+   VK + +T+  L+    R  +
Sbjct: 486 AQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSK 545

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
             +  +  KEM D  +      Y+S+L AY +     +  S++ +MK  G +  V  Y +
Sbjct: 546 YPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTS 605

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           +L          +A E+  +M+++   +PDS   S+++   +  G+ S    + + M E 
Sbjct: 606 MLHAYNASEKWGKACELLLEMEAN-GIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREK 664

Query: 292 GFE---PNLFVLTSLIQCYGKAQRTDDVVRALN-RLPELGI 328
                    F + S      + +R  D+++ ++  LP L I
Sbjct: 665 EIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSI 705



 Score = 42.7 bits (99), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 65/158 (41%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  +E A  LY   R +K + D   F+ LI        +   ++  +EM+ + +      
Sbjct: 508 AAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEV 567

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+++L    +  +  + ++I+ +M   G  P+   Y S+L AY  +        +  EM+
Sbjct: 568 YSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELLLEME 627

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
             G++      + L+      G     F + + M+  E
Sbjct: 628 ANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKE 665


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 3/236 (1%)

Query: 98  RAGNVE--MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           ++G +E  +A  L +  R    R D   ++TLI       N +  + V+ +M++   +P+
Sbjct: 296 KSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPD 355

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TYN ++   GR  R  + + ++KE+   G  P+  TY SLL A+ R    E    +  
Sbjct: 356 LWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICE 415

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM ++G       YNT++ M    G  D+A +I+ DMKSS    PD+ T++ +I      
Sbjct: 416 EMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGR-NPDAVTYTVLIDSLGKA 474

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            KV EA  + +EML+AG +P L   ++LI  Y KA + ++     N +   GI PD
Sbjct: 475 SKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPD 530



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 172/409 (42%), Gaps = 17/409 (4%)

Query: 125  STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
            ++++KLY    +F     +Y++++   +KP+  TYN L+    R +RP +  ++  +M  
Sbjct: 953  NSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRS 1012

Query: 185  NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
             GL P  +TY SL+ A+ + R  E    ++ E++  G +L    Y+ ++      G   +
Sbjct: 1013 LGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRK 1072

Query: 245  AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
            A  +   MK S   +P   T   ++      G+  EAE +   +   G   +    +S+I
Sbjct: 1073 AENLLAIMKES-GIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVI 1131

Query: 305  QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP-KEELGKLVECVEKSNSK 363
              Y K       +  L  + E GI PD R   C +   T +    E   L+  ++ +   
Sbjct: 1132 DAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIVLLNALQDAGFD 1191

Query: 364  LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 423
            L   ++LL E+ +       +  E    +  +      N L+DL     L   A  + +L
Sbjct: 1192 LP--IRLLKEKSESLVSEVDQCLERLEPVEDNAAFNLVNALVDLLWAFELRATASWVFQL 1249

Query: 424  GLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINT 482
             +   +Y  DI   +   W    + LS G+AL A          +L+   E P  + + T
Sbjct: 1250 AIKRSIYRHDIFRVADKDWGADFRKLSAGSALDA----------SLQGYPESPKSVVLIT 1299

Query: 483  GHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 531
            G    +Y+   L S  ++ L E+ +PF     + G  +    + + WL+
Sbjct: 1300 GTA--EYNMVSLDSTLKACLWEMGSPFLPCKTRQGILVAKAHSLRMWLK 1346



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 113/248 (45%), Gaps = 1/248 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R  N+E A  ++    + + + D   ++ +I +YG          +++E+++ G  P+ 
Sbjct: 332 SRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDA 391

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN+LL    R     +V+ I +EM   G   +  TY +++  YG+    +  + +YR+
Sbjct: 392 VTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRD 451

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G       Y  L+         +EA  +  +M  +   +P   T+S++I   +  G
Sbjct: 452 MKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDA-GVKPTLHTYSALICAYAKAG 510

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  EAE  FN M  +G +P+    + ++  + +       +   + +   G TPD+    
Sbjct: 511 KREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYE 570

Query: 337 CLLNVMTQ 344
            +++ + +
Sbjct: 571 VMMHALVR 578



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 37/235 (15%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R GN E    + +      +  D   ++T+I +YG  G  D  + +Y +MK+ G  P+ 
Sbjct: 402 SREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDA 461

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY  L+D++G+A +  +   +  EM D G+ P  +TY++L+ AY +A            
Sbjct: 462 VTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKA------------ 509

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
                                  G  +EA E F  M+ S   +PD   +S M+       
Sbjct: 510 -----------------------GKREEAEETFNCMRRS-GIKPDRLAYSVMLDFFLRFN 545

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITP 330
           ++ +A  +++EM+  GF P+  +   ++    +    D V R +  + EL G+ P
Sbjct: 546 EMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSGMNP 600



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 110/230 (47%), Gaps = 3/230 (1%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR--AKRPWQVKTIY 179
             ++ ++ +Y   G F     + + M+  G  P+++++N L++   +  A  P     + 
Sbjct: 250 QVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLL 309

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            E+  +G+ P+  TY +L+ A  R    E+ ++V+ +M+    Q  +  YN ++++    
Sbjct: 310 NEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRC 369

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               +A E+F++++ S+   PD+ T++S++   S  G   +   +  EM++ GF  +   
Sbjct: 370 ARARKAEELFKELE-SKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMT 428

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             ++I  YGK  R D  ++    +   G  PD      L++ + +  K E
Sbjct: 429 YNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVE 478



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 118/276 (42%), Gaps = 11/276 (3%)

Query: 67   HGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRAR---NEKWRIDPNA 123
            +GK     K+   V     R SK+  K ++        + G Y+RAR   N   R  P+ 
Sbjct: 784  YGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFS-GCYERARAIFNTMMRDGPSP 842

Query: 124  FSTLIKLYGTAGNFDGCLN----VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
                +     A   D  LN    V +E++ +G+K +  +    L+   +A   ++V+ IY
Sbjct: 843  TVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIY 902

Query: 180  KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
              M   G  P  + Y  +LR   + +   D  ++  EM+E G Q  + + N++L +   +
Sbjct: 903  NGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGI 962

Query: 240  GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNLF 298
                    I++ ++ + + +PD  T++++I I  CR +   E  ++ N+M   G EP L 
Sbjct: 963  EDFKSMGIIYQKIQDA-SLKPDEETYNTLI-IMYCRDRRPEEGFSLMNKMRSLGLEPKLD 1020

Query: 299  VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
               SLI  + K +  +        L   G   D  F
Sbjct: 1021 TYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAF 1056



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 90/193 (46%), Gaps = 12/193 (6%)

Query: 103  EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
            E A  L++  R+  +++D   +  ++K Y T+G+     N+   MK  G++P + T + L
Sbjct: 1036 EQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLL 1095

Query: 163  LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKE 219
            + + G++ +P + + + K +   G+  +   Y+S++ AY   G  + G + L+   EMKE
Sbjct: 1096 MVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLT---EMKE 1152

Query: 220  KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP------DSWTFSSMITICS 273
             G++    ++   +        T+EA  +   ++ +    P       S +  S +  C 
Sbjct: 1153 AGIEPDHRIWTCFIRAATLSEGTNEAIVLLNALQDAGFDLPIRLLKEKSESLVSEVDQCL 1212

Query: 274  CRGKVSEAEAMFN 286
             R +  E  A FN
Sbjct: 1213 ERLEPVEDNAAFN 1225



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 46/241 (19%), Positives = 89/241 (36%), Gaps = 36/241 (14%)

Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTY 194
           FD    ++ +M+  GV+ +   Y  ++    R   P     +      NG  L  + + Y
Sbjct: 718 FDVASQIFSDMRFNGVESSECLYQGMVSVYCRMDLPETAHHLLYHAEKNGIILDNDISVY 777

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-K 253
             ++  YG+ +  +   S+   ++++  ++   ++N L+   A  G  + A  IF  M +
Sbjct: 778 IDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMR 837

Query: 254 SSENCQPDSWTFSSMITICSCR---------------------------------GKVSE 280
              +   DS        I   R                                 G + E
Sbjct: 838 DGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFE 897

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            + ++N M  AG+ P + V   +++   K +R  DV   L  + E G  PD + C  +L 
Sbjct: 898 VQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILK 957

Query: 341 V 341
           +
Sbjct: 958 L 958


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 143/303 (47%), Gaps = 6/303 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            R   V+ A GL+     +KWR  P+A  ++ LI  +G AG +   +N+ ++M    + P
Sbjct: 173 ARHNIVDQARGLFFEM--QKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPP 230

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  TYNNL++  G +    +   + K+MT+NG+ P+  T+  +L AY R       LS +
Sbjct: 231 SRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYF 290

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICS 273
             MK   ++   T  N ++     +G   +A +IF  MK   + C PD  TF+++I + S
Sbjct: 291 ELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYS 350

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G++   +  FN ML  G +PN+    +LI  Y       +     N + + G  PD  
Sbjct: 351 VCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVV 410

Query: 334 FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
               LLN   ++ K E+  K+ E + +++ K   V    L +         EA E+ + +
Sbjct: 411 SYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM 470

Query: 393 SKD 395
            ++
Sbjct: 471 ERN 473



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +++  +   +  D  ++++L+  YG +G  +  + V+E M+    KPN+++YN L+D
Sbjct: 393 AFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALID 452

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G      +   I  EM  NG+ PN  +  +LL A GR        SV    + +G++L
Sbjct: 453 AYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKL 512

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           + T YN+ +     VG  D+A  ++  M++ +  +PD  T++ +I+ C    K  EA   
Sbjct: 513 NTTAYNSAIGSYLSVGEYDKALSLYRAMRTKK-VKPDPVTYNVLISGCCKMSKYGEALGF 571

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +EM++     +  V +S+I  Y K  +  +      ++  +G  PD
Sbjct: 572 LDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPD 618



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 1/247 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G  E A  +++  R    + +  +++ LI  YG+ G     + +  EM+  GV+PN++
Sbjct: 421 KSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIV 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +   LL   GR  +  ++K++       G+  N   Y S + +Y      +  LS+YR M
Sbjct: 481 SICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAM 540

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + K ++     YN L++ C  +    EA    ++M   +        +SS+I   S +G+
Sbjct: 541 RTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLK-IPLSKEVYSSVICAYSKQGQ 599

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V+EAE+MF +M   G  P++   T++I  Y  A+  +        +    + PD   C  
Sbjct: 600 VTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSS 659

Query: 338 LLNVMTQ 344
           L+    +
Sbjct: 660 LMRAFNK 666



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/226 (19%), Positives = 100/226 (44%), Gaps = 1/226 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A G  D   + K  +    +S++I  Y   G      +++ +MK +G +P++ITY  ++ 
Sbjct: 568 ALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIH 627

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
               A+   +   ++ EM  + + P+    +SL+RA+ +       L +   M+EK +  
Sbjct: 628 AYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPF 687

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           + + +  +++ C+ +    E   + + M+ S +        + ++      GK+     +
Sbjct: 688 NNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIG-LLNQLLHFLGKSGKIETMMKL 746

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           F +++ +G E N +  + L++    A      +  L  + E G+ P
Sbjct: 747 FYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQP 792



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/207 (18%), Positives = 95/207 (45%), Gaps = 1/207 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G V  A  ++ + +    R D   ++ +I  Y  A N++    ++ EM+   V+P+ 
Sbjct: 595 SKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDS 654

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I  ++L+    +  +P +V  + + M +  +  N +++  ++ A    R   + + + + 
Sbjct: 655 IACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLIKL 714

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+     +S+ L N LL      G  +   ++F  + +S   + + +T+S ++      G
Sbjct: 715 MEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVAS-GAEINFYTYSILLKNLLAAG 773

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSL 303
              +   +   M EAG +P++ +  S+
Sbjct: 774 NWRKYIEVLQWMEEAGLQPSVGMYRSI 800


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 143/303 (47%), Gaps = 6/303 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            R   V+ A GL+     +KWR  P+A  ++ LI  +G AG +   +N+ ++M    + P
Sbjct: 173 ARHNIVDQARGLFFEM--QKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPP 230

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  TYNNL++  G +    +   + K+MT+NG+ P+  T+  +L AY R       LS +
Sbjct: 231 SRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYF 290

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICS 273
             MK   ++   T  N ++     +G   +A +IF  MK   + C PD  TF+++I + S
Sbjct: 291 ELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYS 350

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G++   +  FN ML  G +PN+    +LI  Y       +     N + + G  PD  
Sbjct: 351 VCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVV 410

Query: 334 FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
               LLN   ++ K E+  K+ E + +++ K   V    L +         EA E+ + +
Sbjct: 411 SYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM 470

Query: 393 SKD 395
            ++
Sbjct: 471 ERN 473



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +++  +   +  D  ++++L+  YG +G  +  + V+E M+    KPN+++YN L+D
Sbjct: 393 AFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALID 452

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G      +   I  EM  NG+ PN  +  +LL A GR        SV    + +G++L
Sbjct: 453 AYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKL 512

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           + T YN+ +     VG  D+A  ++  M++ +  +PD  T++ +I+ C    K  EA   
Sbjct: 513 NTTAYNSAIGSYLSVGEYDKALSLYRAMRTKK-VKPDPVTYNVLISGCCKMSKYGEALGF 571

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +EM++     +  V +S+I  Y K  +  +      ++  +G  PD
Sbjct: 572 LDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPD 618



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 1/247 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G  E A  +++  R    + +  +++ LI  YG+ G     + +  EM+  GV+PN++
Sbjct: 421 KSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIV 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +   LL   GR  +  ++K++       G+  N   Y S + +Y      +  LS+YR M
Sbjct: 481 SICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAM 540

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + K ++     YN L++ C  +    EA    ++M   +        +SS+I   S +G+
Sbjct: 541 RTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLK-IPLSKEVYSSVICAYSKQGQ 599

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V+EAE+MF +M   G  P++   T++I  Y  A+  +        +    + PD   C  
Sbjct: 600 VTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSS 659

Query: 338 LLNVMTQ 344
           L+    +
Sbjct: 660 LMRAFNK 666



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/226 (19%), Positives = 100/226 (44%), Gaps = 1/226 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A G  D   + K  +    +S++I  Y   G      +++ +MK +G +P++ITY  ++ 
Sbjct: 568 ALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIH 627

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
               A+   +   ++ EM  + + P+    +SL+RA+ +       L +   M+EK +  
Sbjct: 628 AYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPF 687

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           + + +  +++ C+ +    E   + + M+ S +        + ++      GK+     +
Sbjct: 688 NNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIG-LLNQLLHFLGKSGKIETMMKL 746

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           F +++ +G E N +  + L++    A      +  L  + E G+ P
Sbjct: 747 FYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEEAGLQP 792



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/207 (18%), Positives = 95/207 (45%), Gaps = 1/207 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G V  A  ++ + +    R D   ++ +I  Y  A N++    ++ EM+   V+P+ 
Sbjct: 595 SKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDS 654

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I  ++L+    +  +P +V  + + M +  +  N +++  ++ A    R   + + + + 
Sbjct: 655 IACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLIKL 714

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+     +S+ L N LL      G  +   ++F  + +S   + + +T+S ++      G
Sbjct: 715 MEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVAS-GAEINFYTYSILLKNLLAAG 773

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSL 303
              +   +   M EAG +P++ +  S+
Sbjct: 774 NWRKYIEVLQWMEEAGLQPSVGMYRSI 800


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 191/446 (42%), Gaps = 22/446 (4%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  ++ A  +++  +      D   + TLI ++  AG  D  +++Y+ M+  G+ P+  T
Sbjct: 425 ANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFT 484

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ +++ +G+A        ++ EM ++G  PN  TY  ++    +AR  E  L +Y +M+
Sbjct: 485 YSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQ 544

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G Q     Y+ ++      GY +EA  +F +M+  +N  PD   +  ++ +    G V
Sbjct: 545 NAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQ-QKNWVPDEPVYGLLVDLWGKAGNV 603

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            +A   +  ML AG  PN+    SL+  + +  R  D    +  +  LG+ P  +    L
Sbjct: 604 EKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLL 663

Query: 339 LNVMTQT-PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELFN 390
           L+  T+  P  ++G   E +  +    G+     L      G       D   +  ++ +
Sbjct: 664 LSCCTEAQPAHDMGFFCELMAVT----GHPAHAFLLSMPAAGPDGQNVRDHVSKFLDMMH 719

Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLS 449
           +  ++ K+   + +++      L E A  + E      VY D ++ +S   W ++L  +S
Sbjct: 720 TEDREGKRGLVDSVVNFLNKSGLKEEAGSVWEAAAQRNVYPDAVKEKSSRYWLINLHVMS 779

Query: 450 LGAALTALH---IWINDLSKALESGEEFPPLLGINTGHGKH-KYSDKGLA-SVFESHLKE 504
            G A+TAL     W     + L SG   P  + I TG G+  K +   L     +  L  
Sbjct: 780 DGTAVTALSRTLAWFRQ--RMLVSGIR-PSRVDIITGWGRRSKVTGSSLVRQAVQDLLHT 836

Query: 505 LNAPFHDSPDKVGWFLTTEAAAKSWL 530
            + PF       G F+        WL
Sbjct: 837 FSFPFLAEKGNSGCFVGCGEPLCQWL 862



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +     Y T++ +       D   ++ E M   + CQP+  T++ +I    C   
Sbjct: 369 RQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQM-VKDGCQPNVVTYNRLIHCYGCANY 427

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +FNEM E G EP+     +LI  + KA   D  +    R+ E G++PD      
Sbjct: 428 LKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSV 487

Query: 338 LLNVM 342
           ++N +
Sbjct: 488 IINCL 492


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 117/260 (45%), Gaps = 36/260 (13%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL DR ++     D   ++TLI        ++    V +EMK  G  P+ +TYN LLD  
Sbjct: 257 GLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVY 316

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           G+++R  +   + +EM  NG  P+  TY SL+ AY R    ED L +  +M EKG++  V
Sbjct: 317 GKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDV 376

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-------- 278
             Y TLL+     G    A +IFE+M+ +E C+P+  TF+++I +   RGK         
Sbjct: 377 FTYTTLLSGFEKAGKDKAAVQIFEEMR-NEGCKPNICTFNALIKMHGNRGKFTEMMKVFE 435

Query: 279 ---------------------------SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
                                      SE   +F EM  AGF P      +LI  Y +  
Sbjct: 436 DIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCG 495

Query: 312 RTDDVVRALNRLPELGITPD 331
             D  +    R+ E G+ PD
Sbjct: 496 SFDQAMAVYKRMLEAGVNPD 515



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 118/234 (50%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  + A  +++  RNE  + +   F+ LIK++G  G F   + V+E++K     P+++
Sbjct: 388 KAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIV 447

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM   G  P  +T+ +L+ +Y R    +  ++VY+ M
Sbjct: 448 TWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM 507

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   ++ YN +LA  A  G   ++ ++  +MK    C+P+  T+ S++   +   +
Sbjct: 508 LEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGR-CKPNELTYCSLLHAYANGKE 566

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +    A+  E+     EP   +L +L+    K     +  RA   L + G +PD
Sbjct: 567 IERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPD 620



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 124 FSTLIKLYGTAGN-FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           ++ ++ +YG  G  ++  + + + MK+ G+ P+  TYN L+    R     +   + KEM
Sbjct: 238 YNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEM 297

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G SP+  TY +LL  YG++R  ++ + V +EM+  G   S+  YN+L++  A  G  
Sbjct: 298 KLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLL 357

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           ++A E+   M   +  +PD +T++++++     GK   A  +F EM   G +PN+    +
Sbjct: 358 EDALELKNQM-VEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNA 416

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           LI+ +G   +  ++++    +     +PD      LL+V  Q
Sbjct: 417 LIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQ 458



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 1/183 (0%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           + E++  G  P++ T N ++   GR +   +   I   M   G +P+  TY SL+  Y R
Sbjct: 609 FLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSR 668

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           +   E +  + RE+  KG++  +  YNT++      G   +A  +  +M+ S    PD  
Sbjct: 669 SANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRES-GPAPDII 727

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+++ I   +      EA  +   M++ G +PN     S++  Y K  R D+    +N L
Sbjct: 728 TYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL 787

Query: 324 PEL 326
            +L
Sbjct: 788 RKL 790



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 2/170 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMKEK 220
           ++  +G+  R     ++   +  +G   +   Y S++ A+    RY E  + V+++M+E 
Sbjct: 171 IISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVM-VFKKMEEV 229

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G + ++  YN +L +   +G          D   S    PDS+T++++I+ C       E
Sbjct: 230 GCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEE 289

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           A  +  EM  AGF P+     +L+  YGK++R+ + +  L  +   G  P
Sbjct: 290 AAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPP 339



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 101/235 (42%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+ + A  +Y R        D ++++ ++      G +     V  EMK    KPN 
Sbjct: 492 SRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNE 551

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +LL      K   ++  + +E+    + P      +L+    +     +T   + E
Sbjct: 552 LTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLE 611

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++++G    +T  N ++++        +A EI + MK      P   T++S++ + S   
Sbjct: 612 LRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRG-GFTPSLTTYNSLMYMYSRSA 670

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               +E +  E+L  G  P++    ++I  Y +  R  D  R L+ + E G  PD
Sbjct: 671 NFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPD 725



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 1/157 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R   +  D    + ++ +YG          + + MK  G  P++ TYN+L+    R+   
Sbjct: 613 RQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANF 672

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + + I +E+   G+ P+  +Y +++ AY R     D   V  EM+E G    +  YNT 
Sbjct: 673 ERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTF 732

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +A  A      EA ++   M     C+P+  T++S++
Sbjct: 733 IASYAADSMFVEAIDVVCYM-IKHGCKPNQSTYNSIV 768



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 62/122 (50%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++L+ +Y  + NF+    +  E+ A G++P++I+YN ++    R  R      +  EM 
Sbjct: 659 YNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMR 718

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           ++G +P+  TY + + +Y       + + V   M + G + + + YN+++     +   D
Sbjct: 719 ESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRD 778

Query: 244 EA 245
           EA
Sbjct: 779 EA 780



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 46/105 (43%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R+ N E +  +      +  R D  +++T+I  Y   G       V  EM+  G  P++
Sbjct: 667 SRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDI 726

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           ITYN  + +        +   +   M  +G  PN +TY S++  Y
Sbjct: 727 ITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWY 771


>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
 gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
          Length = 574

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 115/518 (22%), Positives = 211/518 (40%), Gaps = 64/518 (12%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMA--FGLYDRARNEKWR--IDPNA- 123
           + G +   +IW   ++    K    +Y T  G +  A  F + +   +E  R   +PN  
Sbjct: 46  EAGVAYNFFIWARKQA--GFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVV 103

Query: 124 -FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            ++ LI  YG A + D  L ++  M+ +G +P+ +TY  L+D   +A        +Y++M
Sbjct: 104 TYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQM 163

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G  P+  TY+ ++   G+A        ++ EM ++G   S+  YN ++ + A  G  
Sbjct: 164 QHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKF 223

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A +++ D++      PD  T+  ++ +    G + +AE +F EM  AG+  +  +   
Sbjct: 224 DMALKLYSDLQEV-GYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGL 282

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV--------------------- 341
           ++  +GK    +   +  NR+ + G+ P+   C  LL+                      
Sbjct: 283 MVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWG 342

Query: 342 ---MTQTPKEELGKLVEC--VEKSNSKLG-----------YVVKLLLEEQDIEGDFKKEA 385
                QT    L     C    + ++  G           +V  LL       G      
Sbjct: 343 LYPTLQTYTSLLSSCAACRAAWEYDALFGLMGGTGHPAHPFVCSLLASGGTAGGTMVVGI 402

Query: 386 TELFNSIS---KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-------IQS 435
              F+++     + ++ + + LID       L  A K +  G   EV  +       ++ 
Sbjct: 403 RCFFDAMQFEELESRRGFADSLID------FLHRAGKAVAAGSVWEVAAEKNLYPNAVRE 456

Query: 436 RSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKG-- 493
           ++P  WS++L  +S G AL AL   +   ++A+      P  + I TG G+         
Sbjct: 457 KAPQYWSINLHVMSTGTALVALARTLAMFAEAVVRTGAAPYRIDIITGWGRRSRVPGASL 516

Query: 494 LASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 531
           +    E  L+ LN+PFH     VG F+    A   WL+
Sbjct: 517 VKQAVEGMLRSLNSPFHLDGLNVGCFVGQGPALAEWLK 554


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 130/248 (52%), Gaps = 1/248 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  +E+A  +Y +   E    +   ++ LI ++G  GN+   + V + ++  G KP + 
Sbjct: 120 KANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVR 179

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN +L    R+ +P     +Y+ M  +G  P   TY +L+ AYG+    E+ L ++++M
Sbjct: 180 TYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDM 239

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G + +V  Y++L++ C   G    A E+ ++M   +NC+P++ TF+++++ C+  G+
Sbjct: 240 VRRGCERNVITYSSLISACEKAGRWQLALELLDEMH-RDNCKPNTVTFNALLSACAQGGQ 298

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
              A+ +F +M   G +P+      LI  + +  +    ++AL+ +   G  PD      
Sbjct: 299 WKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNV 358

Query: 338 LLNVMTQT 345
           ++  +T++
Sbjct: 359 VIEALTRS 366



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 1/225 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++T+I   G+       L +  EM+  GV  N+ TY+ L++   +A        +Y
Sbjct: 72  DVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            ++   G +PN  TY  L+  +G+    ++ + V   ++++G +  V  YNT+L+ C   
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRS 191

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  + A  ++E M  ++  QP + T++++I+     GK+ EA  +F +M+  G E N+  
Sbjct: 192 GQPEHALRVYERML-ADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVIT 250

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            +SLI    KA R    +  L+ +      P+      LL+   Q
Sbjct: 251 YSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQ 295



 Score = 45.4 bits (106), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 1/124 (0%)

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           V  Y T+++ C       +A E+  +M+       +  T+S+++ +C    ++  A  ++
Sbjct: 73  VYTYTTIISQCGSHQQLRKALELVAEMRG-HGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
            ++L  G  PNL     LI  +GK     + V+ L+ L + G  P+ R    +L+   ++
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRS 191

Query: 346 PKEE 349
            + E
Sbjct: 192 GQPE 195


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 210/494 (42%), Gaps = 81/494 (16%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +++LI+ Y  AGN  G   V+++M+  G  P++ TY+ LL   G      QV++++
Sbjct: 257 DIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLF 316

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M D    P   TY SL++ +G   Y +++++++ +M + G++     Y+ LL++C   
Sbjct: 317 SDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRG 376

Query: 240 GYTDEAFEIFEDMKSSENC----------------------------------QPDSWTF 265
           G T EA +I + M ++E+                                    P    +
Sbjct: 377 GLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAY 436

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
            ++I   +  G   EA +    M +AGF+  +  + S+++ Y K    D+ +   + L +
Sbjct: 437 DALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQ 496

Query: 326 L-GITPDDRFCGCLLNV-----MTQTPKEEL----------GKLVECVEKS----NSKLG 365
             G   D+R    LL V     + +  KEE           G  V C+  S     SK  
Sbjct: 497 KEGSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWD 556

Query: 366 YVVKLLLE-------EQDIEG--------DFKKEATEL-FNSIS-KDVKKA--YCNCLID 406
           Y  +LL E        Q + G        DF  +  E  F+ +  +D++++  + N L++
Sbjct: 557 YATQLLDEMIAAGGLHQVVVGIVRGTYDADFSWQVVEYAFDGLKLRDMEESMDFYNALVE 616

Query: 407 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 466
           L V  N    A ++L   +    + +   ++   WS+++  +S GA +TAL  W NDL +
Sbjct: 617 LLVYCNQKARAARVLADAMQRGAFPEAFIKTRRVWSVNVHRMSAGATVTALSTWFNDLQE 676

Query: 467 ALESGEEFPPLLGINTGHG----KHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTT 522
                E+ P +  I    G      K  D  +A V ++ LK   AP   +    G  +  
Sbjct: 677 C----EKLPFMTSIVVSCGDIEDHRKVEDLPVAKVVQAFLKHYAAPLETASWNEGRIVCK 732

Query: 523 EAAAKSWLESRSSL 536
             A K WL S  S 
Sbjct: 733 GEALKPWLSSMPSF 746



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 125/247 (50%), Gaps = 6/247 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKP 154
           R G  E +  L  R + E+  ++PN   ++T++      G +++G LN++ +M+  G++P
Sbjct: 129 RNGQYEASLHLLARMKKEQ--VEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQP 186

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ITYN LL          Q   ++K M ++G+  +  TY SL+  +  +        + 
Sbjct: 187 DLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELL 246

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           REM+++G    +  YN+L+   AD G    A  +F+ M+    C PD  T+S+++ I   
Sbjct: 247 REMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRG-GCAPDVETYSTLLRIYGN 305

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           +G   +  ++F++M +    P +    SLIQ +G+     + +   + + + G+ PDD  
Sbjct: 306 QGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDAT 365

Query: 335 CGCLLNV 341
              LL+V
Sbjct: 366 YSALLSV 372



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 1/231 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G VE A  ++          D   + +L+  +  +        +  EM+  G  P++  Y
Sbjct: 202 GLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGY 261

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N+L++    A        ++K+M   G +P+  TY++LLR YG     E   S++ +MK+
Sbjct: 262 NSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKD 321

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
                +V  YN+L+ +  + GY  E+  +F DM  S   +PD  T+S+++++C   G   
Sbjct: 322 LSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDS-GVKPDDATYSALLSVCGRGGLTR 380

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           EA  +   ML     P+L     LI  YGK     D + +  R+ E G+ P
Sbjct: 381 EAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDP 431



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 7/212 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           FS + + +    ++   L +++ M +    KP    Y  ++  MGR     +   I+++M
Sbjct: 49  FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDM 108

Query: 183 TDNGLSPNWNTYA--SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
            +N +   WN YA  +L+ AYGR    E +L +   MK++ ++ ++  YNT+L  C+  G
Sbjct: 109 PENDV--KWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGG 166

Query: 241 YTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              E    +F  M+  E  QPD  T++++++ CS RG V +A  +F  M E+G   +   
Sbjct: 167 LDWEGLLNLFAQMR-HEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVT 225

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SL+  +  + +   V   L  + + G  PD
Sbjct: 226 YKSLVDTFAGSNQLGRVEELLREMEDEGNPPD 257


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 143/301 (47%), Gaps = 2/301 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R    + A GL+   +  + + D   ++ LI  +G AG +   +N+ ++M    + P+ 
Sbjct: 161 ARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSR 220

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYNNL++  G +    +   + K+MTDNG+ P+  T+  +L A+         LS +  
Sbjct: 221 STYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFEL 280

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCR 275
           +K   ++   T +N ++     +   D+A +IF  MK  ++ C PD  TF+SMI + S  
Sbjct: 281 IKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVC 340

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G +   EA FN ML  G +PN+    +L+  Y      ++ ++  N + + G  PD    
Sbjct: 341 GHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSY 400

Query: 336 GCLLNVMTQTPKEELGK-LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
             LLN   ++ K +  + + + ++++N K   V    L +        ++A E+   + +
Sbjct: 401 TSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQ 460

Query: 395 D 395
           D
Sbjct: 461 D 461



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 150/355 (42%), Gaps = 85/355 (23%)

Query: 90  LKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEM 147
           +K K YD        A  +++  + +K    P+   F+++I LY   G+ + C   +  M
Sbjct: 301 VKLKQYDK-------AVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMM 353

Query: 148 KAIGVKPNMITYN-----------------------------------NLLDTMGRAKRP 172
            A G+KPN+++YN                                   +LL+  GR+++P
Sbjct: 354 LAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKP 413

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE------------- 219
            + + I+K +  N L PN  +Y +L+ AYG     ED + + REM++             
Sbjct: 414 QKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTL 473

Query: 220 ----------------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
                                 +G++L+   YN+ +    +VG  D+A +++  M+  + 
Sbjct: 474 LAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKK- 532

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK-AQRTDDV 316
            + DS T++ +I+ C    K  EA +   EM+      +  V +S+I  Y K A     +
Sbjct: 533 IKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQI 592

Query: 317 VRA---LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 367
           + A    N +  LG +PD      +L+      K E+L  L E +E+++ KL  +
Sbjct: 593 IEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTI 647



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 11/234 (4%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN  +++ LI  YG+ G  +  + +  EM+   + PN+++   LL   GR  +  ++ 
Sbjct: 428 LKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKID 487

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           T+       G+  N   Y S + +Y      +  + +Y  M++K ++     Y  L++ C
Sbjct: 488 TVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGC 547

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC------SCRGKVSEAEAMFNEMLE 290
             +    EA    E+M   +   P S    S I IC      S  G++ EAE+ FN M  
Sbjct: 548 CKMSKFGEALSFMEEMMHLK--LPMSKEVYSSI-ICAYSKQASALGQIIEAESTFNLMKS 604

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            G  P++   T+++  Y  A++ + +      + E  +  D   C  L+    +
Sbjct: 605 LGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRAFNK 658



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 114/283 (40%), Gaps = 46/283 (16%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           G+ G   K    ++    R  KL   +Y++        G  + A  LY+  R +K + D 
Sbjct: 478 GRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDS 537

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEM---------------------------------- 147
             ++ LI        F   L+  EEM                                  
Sbjct: 538 VTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEAES 597

Query: 148 -----KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
                K++G  P+++TY  +LD    A++  ++  +++EM +N +  +    A+L+RA+ 
Sbjct: 598 TFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRAFN 657

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +       LS+ + M+EK + LS T++  +++ C  +     A ++ + M+ S      S
Sbjct: 658 KGGQPGRVLSLAQSMREKDIPLSDTIFFEMVSACGLLHDWKTAVDMIKYMEPSLPV-ISS 716

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
              +  +      GK+     +F +ML +G E N    + L++
Sbjct: 717 GCLNLFLNSLGKSGKIEIMLKLFFKMLASGAEVNFNTYSILLK 759


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 138/261 (52%), Gaps = 3/261 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A+ LY++  +     +   +++LI+ +   G  +    +Y+EM   G  P+++
Sbjct: 494 RRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLM 553

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N+ +D + +A    + + +++E+   GL P+  +Y+ L+    +A +  +T  ++ EM
Sbjct: 554 LLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEM 613

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G+ L V  YNT++      G  D+A+++ E+MK ++  QP   T+ S++   +   +
Sbjct: 614 KEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMK-TKGLQPTVVTYGSVVDGLAKIDR 672

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F E    G + N+ + +SLI  +GK  R D+    L  L + G+TP+     C
Sbjct: 673 LDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNC 732

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           LL+ + +   EE+ +   C +
Sbjct: 733 LLDALVKA--EEIDEAQVCFQ 751



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 3/240 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G ++ A  L D  ++  +  D   ++  I  +G  G  D     + EMKA G+ P+ 
Sbjct: 249 AREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDD 308

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY  L+  + +A+R  +   +++E+  N   P    Y +++  YG A   ++  S+   
Sbjct: 309 VTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLER 368

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            K KG   SV  YN +L      G  +EA  I ++M+  ++  P+  T++ +I +    G
Sbjct: 369 QKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMR--QDAAPNLTTYNILIDMLCKAG 426

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FC 335
           ++  A  + + M EAG  PN+  +  +I    KAQ+ D+       L     +PD R FC
Sbjct: 427 ELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFC 486



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 116/236 (49%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG     + L+   + +   +D  A++T+I  +  +G  D    + EEMK  G++P +
Sbjct: 598 VKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTV 657

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   +  E
Sbjct: 658 VTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEE 717

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           + +KG+  +   +N LL         DEA   F++MK+ + C P++ T+S MI  +C  R
Sbjct: 718 LMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLK-CSPNAMTYSIMINGLCMIR 776

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + EM + G +PN    T++I    KA    +     +R    G  PD
Sbjct: 777 -KFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPD 831



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 10/236 (4%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+ + +   +  + + F+TL++++   G  D  L++ +EMK+     +++ YN  +D  G
Sbjct: 225 LFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFG 284

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +  +       + EM   GL P+  TY +L+    +AR  ++ + ++ E+        V 
Sbjct: 285 KVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVY 344

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YNT++      G  DEA+ + E  K  + C P    ++ ++T    +GKV EA  + +E
Sbjct: 345 AYNTMIMGYGSAGKFDEAYSLLERQK-RKGCIPSVIAYNCILTCLGRKGKVEEALRIHDE 403

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
           M +    PNL     LI    KA   +  ++  + + E G+ P+        DR C
Sbjct: 404 MRQDA-APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLC 458



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 14/248 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R G VE A  ++D  R +     PN   ++ LI +   AG  +  L V + MK  G+ PN
Sbjct: 390 RKGKVEEALRIHDEMRQDAA---PNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPN 446

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++T N ++D + +A++  +  +I+  +     SP+  T+ SL+   GR    +D  S+Y 
Sbjct: 447 IMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYE 506

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M +     +V +Y +L+      G  ++  +I+++M     C PD    +S +      
Sbjct: 507 KMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEM-VHRGCSPDLMLLNSYMDCVFKA 565

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD---- 331
           G+V +  A+F E+   G  P++   + LI    KA  + +  +    + E G+  D    
Sbjct: 566 GEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAY 625

Query: 332 ----DRFC 335
               D FC
Sbjct: 626 NTVIDGFC 633



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 96/210 (45%), Gaps = 3/210 (1%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
             V E M+    +P    Y  L+  +  A RP  + T++ +M + G   N + + +L+R 
Sbjct: 188 FGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRV 247

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           + R    +  LS+  EMK       + LYN  +     VG  D A++ F +MK+ +   P
Sbjct: 248 FAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKA-QGLVP 306

Query: 261 DSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           D  T++++I  +C  R ++ EA  +F E+      P ++   ++I  YG A + D+    
Sbjct: 307 DDVTYTTLIGVLCKAR-RLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSL 365

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           L R    G  P      C+L  + +  K E
Sbjct: 366 LERQKRKGCIPSVIAYNCILTCLGRKGKVE 395



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 97/214 (45%), Gaps = 1/214 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AFG+ +  R  K+R   +A++TLI     A   D  L ++ +M+ IG + N+  +  L+ 
Sbjct: 187 AFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVR 246

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R  R     ++  EM  N  + +   Y   +  +G+    +     + EMK +G+  
Sbjct: 247 VFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVP 306

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               Y TL+ +       DEA E+FE++  + +  P  + +++MI      GK  EA ++
Sbjct: 307 DDVTYTTLIGVLCKARRLDEAVELFEELDLNRSV-PCVYAYNTMIMGYGSAGKFDEAYSL 365

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
                  G  P++     ++ C G+  + ++ +R
Sbjct: 366 LERQKRKGCIPSVIAYNCILTCLGRKGKVEEALR 399



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 1/206 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A++    ++   +S+LI  +G  G  D    + EE+   G+ PN  T+N LLD
Sbjct: 676 AYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLD 735

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   + +  ++ M +   SPN  TY+ ++      R        ++EM+++G++ 
Sbjct: 736 ALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKP 795

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y T++A  A  G   EA  +F+  K+S    PDS  +++MI   S   K  +A  +
Sbjct: 796 NNITYTTMIAGLAKAGNVMEARGLFDRFKASGGV-PDSACYNAMIEGLSSANKAMDAYIV 854

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKA 310
           F E    G   N      L+    KA
Sbjct: 855 FEETRLKGCRVNSKTCVVLLDALHKA 880



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 90/202 (44%), Gaps = 3/202 (1%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN  L  M R +    ++ I +EM+  G   + +    L+ ++ ++   ++   V   M
Sbjct: 135 VYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMM 194

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++   + + + Y TL+   +     D    +F  M+     + +   F++++ + +  G+
Sbjct: 195 RKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEI-GYEANVHLFTTLVRVFAREGR 253

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A ++ +EM    F  +L +    I C+GK  + D   +  + +   G+ PDD     
Sbjct: 254 IDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTT 313

Query: 338 LLNVMTQTPKEELGKLVECVEK 359
           L+ V+ +  +  L + VE  E+
Sbjct: 314 LIGVLCKARR--LDEAVELFEE 333


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 122/247 (49%), Gaps = 1/247 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A   +D  +   ++     ++++++++G AG +   LN+ +EM+    +P+ I
Sbjct: 320 REGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAI 379

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+    RA    +   +   M   G+ PN  TY +++ AYG+A   +  L V+ +M
Sbjct: 380 TYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQM 439

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G   +V  YN +L +      +++  +I  DMK +  C PD  T+++M+ +C  +GK
Sbjct: 440 KELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLN-GCPPDRITWNTMLAVCGEKGK 498

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
                 +  EM   GFEP+     +LI  YG+     DV +    +   G TP       
Sbjct: 499 QKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNA 558

Query: 338 LLNVMTQ 344
           LLN + +
Sbjct: 559 LLNALAR 565



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 9/262 (3%)

Query: 77  YIWVNPKSPRASKLKEKSYD------TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           ++W+N  S    K+ ++S +       R     +A  L+D    E++ +D  A +T++  
Sbjct: 188 WVWLNFGSENM-KVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHA 246

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSP 189
           Y   G +   + ++E+MK  G+ P ++TYN +LD  G+  R W  +  +  EM   GL  
Sbjct: 247 YARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEF 306

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           +  T  +++ A GR    ++    + ++K  G +     YN++L +    G   EA  I 
Sbjct: 307 DEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNIL 366

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ + NC+PD+ T++ ++      G   E  A+ + M   G  PN    T++I  YGK
Sbjct: 367 KEMEDN-NCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGK 425

Query: 310 AQRTDDVVRALNRLPELGITPD 331
           A   D  +    ++ ELG  P+
Sbjct: 426 AGDADKALEVFGQMKELGCVPN 447



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 38/266 (14%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP------ 172
           PNA  ++T+I  YG AG+ D  L V+ +MK +G  PN+ TYNN+L  +G+  R       
Sbjct: 411 PNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKI 470

Query: 173 ---------------WQ--------------VKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
                          W               V  + +EM + G  P+  T+ +L+ AYGR
Sbjct: 471 LCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGR 530

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
                D   +Y EM   G    +T YN LL   A  G    A  +  DM+  +  +P+  
Sbjct: 531 CGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMR-KKGFKPNET 589

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           ++S ++   S  G V   E +  E+ +    P+  +L +L+    K ++   + RA ++L
Sbjct: 590 SYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQL 649

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEE 349
              G   D      +L++  +  K E
Sbjct: 650 QNNGYKLDMVVINSMLSMFVRNQKLE 675



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 117/268 (43%), Gaps = 24/268 (8%)

Query: 97  TRAGNV----EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           ++AGNV    ++   +YD      W +      TL+          G    + +++  G 
Sbjct: 599 SKAGNVRGLEKVEMEIYDGHVFPSWML----LRTLVLTNYKCRQLKGMERAFHQLQNNGY 654

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           K +M+  N++L    R ++  +   +   +  +GL PN  TY SL+  Y R         
Sbjct: 655 KLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEE 714

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           + ++++  G+   V  YNT++      G   EA  I  +M ++   QP   TF++ ++  
Sbjct: 715 MLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEM-TANGVQPCPITFNTFMSCY 773

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  G  +EA+ +   M+E G  PN      +I  Y KA++  + +  ++++ E+ I+ DD
Sbjct: 774 AGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISFDD 833

Query: 333 RFCGCLLNVMTQTPKEELGKLVECVEKS 360
                          + L KL  C+ +S
Sbjct: 834 ---------------QSLKKLASCIRES 846



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 99/207 (47%), Gaps = 1/207 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L+      GN+    +V  +M+  G KPN  +Y+ LL    +A     ++ +  E+ 
Sbjct: 556 YNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIY 615

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D  + P+W    +L+    + R  +     + +++  G +L + + N++L+M       +
Sbjct: 616 DGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLE 675

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A E+  D+      QP+  T++S+I + +  G   +AE M  ++  +G  P++    ++
Sbjct: 676 KAHEML-DVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTV 734

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           I+ + K     + +R L+ +   G+ P
Sbjct: 735 IKGFCKKGLVQEAIRILSEMTANGVQP 761


>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 139/286 (48%), Gaps = 10/286 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +  +I +Y  AGN+D    V+  M   GV  + +TYN+L+      K   +V  IY
Sbjct: 246 DQKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSFETNYK---EVSKIY 302

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M  +G+ P+  +YA L++AYGRAR  E+ LSV+ EM + G++ +   YN LL   A  
Sbjct: 303 DQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 362

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A  +F+ M+  +   PD W++++M++       +  AE  F  +   GFEPN+  
Sbjct: 363 GMVEQAKTVFKSMR-RDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELG---KLV 354
             ++I+ Y KA   + ++    ++   GI  +      +++   +       LG   ++ 
Sbjct: 422 YGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKDFGSALGWYKEME 481

Query: 355 ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAY 400
            C    + K   V+  L   QD E D  KE T L N  +  V + Y
Sbjct: 482 SCGVPPDQKAKNVLLSLYSTQD-ELDEAKELTGLRNETATIVARVY 526



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 7/241 (2%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  LI  YG  GNF+G   V   +  +G  PN+I+Y  L+++ GR  +    +
Sbjct: 135 WNFSEMDFLMLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAE 194

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
            I++ M  +G  P+  TY  +L+ +    + +  E+      + K+  ++    +Y+ ++
Sbjct: 195 AIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 254

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            M    G  D+A ++F  M   +     + T++S+++  +   +VS+   ++++M  +G 
Sbjct: 255 YMYKKAGNYDKARKVFSSM-VGKGVPQSTVTYNSLMSFETNYKEVSK---IYDQMQRSGI 310

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
           +P++     LI+ YG+A+R ++ +     + + G+ P  +    LL+    +   E  K 
Sbjct: 311 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 370

Query: 354 V 354
           V
Sbjct: 371 V 371



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 3/209 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    + D  +++ LIK YG A   +  L+V+EEM   GV+P    YN LLD   
Sbjct: 301 IYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 360

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            +    Q KT++K M  + + P+  +Y ++L AY  A   E     ++ +K  G + ++ 
Sbjct: 361 ISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIV 420

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFN 286
            Y T++   A     ++  E++E M+ S      + T  + I   S R K    A   + 
Sbjct: 421 TYGTMIKGYAKANDVEKMMEVYEKMRLS--GIKANQTILTTIMDASGRCKDFGSALGWYK 478

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           EM   G  P+      L+  Y      D+
Sbjct: 479 EMESCGVPPDQKAKNVLLSLYSTQDELDE 507



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 75/150 (50%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R ++   D  +++T++  Y  A + +G    ++ +K  G +PN++T
Sbjct: 362 SGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  ++    +A    ++  +Y++M  +G+  N     +++ A GR +     L  Y+EM+
Sbjct: 422 YGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKDFGSALGWYKEME 481

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
             G+       N LL++ +     DEA E+
Sbjct: 482 SCGVPPDQKAKNVLLSLYSTQDELDEAKEL 511


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 8/331 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VEMA  ++  A  E +     AFS +I  YG +G  +  + ++  MK  G+KPN++
Sbjct: 89  RLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLV 148

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D  G+    + +V  I+ EM  NG+ P+  T+ SLL    +    E   S+  E
Sbjct: 149 TYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCE 208

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G+   +  YNTLL      G  D AFEI  +M  ++N  P+  T+S+MI   +  G
Sbjct: 209 MVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEM-PAKNILPNVVTYSTMIDGYAKAG 267

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ +A  +FNEM   G   +     +L+  Y K  R ++ +     +   GI  D     
Sbjct: 268 RLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYN 327

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            LL    +  K + + K+ E ++  +     +    L +   +G   +EA ++F    K 
Sbjct: 328 ALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKA 387

Query: 396 VKKA---YCNCLID-LCVNLNLLENACKLLE 422
             KA     + LID LC N  L+E+A  LL+
Sbjct: 388 GLKADVVLYSALIDALCKN-GLVESAVSLLD 417



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 213/468 (45%), Gaps = 53/468 (11%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG ++ A  L++  +     +D  +++TL+ +Y   G F+  ++V  EM+  G++ ++
Sbjct: 264 AKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDV 323

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL   G+  +   V+ +++EM    +SPN  TY++L+  Y +     + + V+RE
Sbjct: 324 VTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFRE 383

Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI------ 269
            K+ G++  V LY+ L+ A+C + G  + A  + ++M + E  +P+  T++S+I      
Sbjct: 384 FKKAGLKADVVLYSALIDALCKN-GLVESAVSLLDEM-TKEGIRPNVVTYNSIIDAFGRP 441

Query: 270 ----TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS------LIQCYGK---------- 309
               ++    G+ SE +   + +  +  E     L +      +I+ +G+          
Sbjct: 442 ATTESVVDDAGQTSELQ--IDSLSSSAVEKATKSLVADREDNRIIKIFGQLAAEKAGQAK 499

Query: 310 ---AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-SNSKL 364
               Q    ++   +++ EL I P+      +LN  ++    EE   L+E +    N   
Sbjct: 500 NSGGQEMMCILGVFHKMHELEIKPNVVTFSAILNACSRCNSFEEASMLLEELRLFDNQVY 559

Query: 365 GYVVKLLLEEQDIEGDFKKEATELFNSI---SKDVKKAYCNCLIDLCVNLNLLENACKLL 421
           G    LL+  ++   +  ++A  LF+ +         A+ N L D+  +      A  ++
Sbjct: 560 GVAHGLLMGYRE---NVWEQAQSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVV 616

Query: 422 ELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGIN 481
             G   +V+ ++ S S     L L  +S GAA   +H W+ ++   +  G E P LL   
Sbjct: 617 LEGKRRQVWENVWSES----CLDLHLMSSGAARAMVHAWLLNVRAIVFEGHEVPKLLSKV 672

Query: 482 TGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSW 529
            G       D  L    E+ L  + APF  +   +G  ++T +   SW
Sbjct: 673 VG-------DSTLRRAVEALLMGMGAPFRSAKCNLGRLISTGSVVASW 713



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 9/235 (3%)

Query: 98  RAGNVEMAFGLYDR--ARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           + G ++MAF +     A+N    I PN   +ST+I  Y  AG  D   N++ EMK +G+ 
Sbjct: 230 KGGQLDMAFEIMSEMPAKN----ILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGIS 285

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
            + ++YN LL    +  R  +   + +EM ++G+  +  TY +LL  YG+    +    V
Sbjct: 286 LDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKV 345

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + EMK + +  ++  Y+TL+ + +  G   EA ++F + K +   + D   +S++I    
Sbjct: 346 FEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKA-GLKADVVLYSALIDALC 404

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             G V  A ++ +EM + G  PN+    S+I  +G+   T+ VV    +  EL I
Sbjct: 405 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQI 459



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 8/232 (3%)

Query: 107 GLYDRAR-------NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL++ AR       N     D   ++TL+      G  D    +  EM A  + PN++TY
Sbjct: 197 GLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTY 256

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + ++D   +A R    + ++ EM   G+S +  +Y +LL  Y +    E+ + V REM+ 
Sbjct: 257 STMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMEN 316

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++  V  YN LL         D   ++FE+MK+  +  P+  T+S++I + S  G   
Sbjct: 317 SGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKA-RHVSPNLLTYSTLIDVYSKGGLYR 375

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA  +F E  +AG + ++ + ++LI    K    +  V  L+ + + GI P+
Sbjct: 376 EAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 427


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 122/252 (48%), Gaps = 1/252 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  L+ + ++     D   ++ L+ +YG AG ++   NV +EM++ G  PN++TYN L
Sbjct: 205 EEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNEL 264

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L   GRA        +   M   G+ P+  TY SLL AY RA   E  + +Y +M+    
Sbjct: 265 LSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNC 324

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
             +   +N L+ M        E   IFEDM++    +PD  T++S++      G  SE  
Sbjct: 325 TPNSFTFNALIGMHGKNKNFSEMMVIFEDMQAC-GVEPDIVTWNSLLGAFGKNGMYSEVL 383

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            +F  M +AGFEP+      LI+ YG+   +D  +   + + + G TPD      LL  +
Sbjct: 384 KVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAAL 443

Query: 343 TQTPKEELGKLV 354
            +  + E  +L+
Sbjct: 444 AREGRWEHAELI 455



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 37/263 (14%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPN-------- 155
           A G +++ +    +     ++ +I LYG  G +++  L ++EEMKA G++P+        
Sbjct: 136 ALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAI 195

Query: 156 ---------------------------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
                                       +TYN LLD  G+A    +   + KEM   G  
Sbjct: 196 TACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCL 255

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           PN  TY  LL A+GRA        +   M  KG++  V  Y +LL+  +  G  ++A EI
Sbjct: 256 PNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEI 315

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           +  M++S NC P+S+TF+++I +       SE   +F +M   G EP++    SL+  +G
Sbjct: 316 YNQMRTS-NCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFG 374

Query: 309 KAQRTDDVVRALNRLPELGITPD 331
           K     +V++    + + G  PD
Sbjct: 375 KNGMYSEVLKVFRGMKKAGFEPD 397



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 114/225 (50%), Gaps = 2/225 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+   R E + +D  A+++LI        F   L  +E+MK  G +P+++TYN ++D  G
Sbjct: 104 LFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYG 163

Query: 168 RAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           +  R W+ +  +++EM   G+ P+  TY + + A       E+   ++ +MK        
Sbjct: 164 KKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDR 223

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             YN LL +    G+ +EA  + ++M+S+  C P+  T++ +++     G  + A  M +
Sbjct: 224 VTYNALLDVYGKAGWYNEAANVLKEMESA-GCLPNIVTYNELLSAFGRAGLCNAAAEMKD 282

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            M+  G EP++F  TSL+  Y +A + +  +   N++     TP+
Sbjct: 283 SMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPN 327



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 36/280 (12%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG VE A  +Y++ R      +   F+ LI ++G   NF   + ++E+M+A GV+P++
Sbjct: 304 SRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDI 363

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+N+LL   G+     +V  +++ M   G  P+  T+  L+ AYGR    +  LS+Y  
Sbjct: 364 VTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDG 423

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G    +  +NTLLA  A  G  + A  I +++  S + +P+   ++SM+   +  G
Sbjct: 424 MLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRS-SYKPNDIAYASMLHAYANGG 482

Query: 277 K-----------------------------------VSEAEAMFNEMLEAGFEPNLFVLT 301
           +                                   V EAE  F  M   G+  +     
Sbjct: 483 ELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFN 542

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           ++I  YGK    D        L   G+ PD     CL+ +
Sbjct: 543 AMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGM 582



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 115/229 (50%), Gaps = 4/229 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A  + D   ++    D   +++L+  Y  AG  +  + +Y +M+     PN  
Sbjct: 270 RAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSF 329

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+   G+ K   ++  I+++M   G+ P+  T+ SLL A+G+     + L V+R M
Sbjct: 330 TFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGM 389

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+ G +     +N L+      G +D+A  I++ M  +  C PD  TF++++   +  G+
Sbjct: 390 KKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQA-GCTPDLATFNTLLAALAREGR 448

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRL 323
              AE + +E+  + ++PN     S++  Y   G+ ++  ++V  L+ +
Sbjct: 449 WEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTI 497



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 105/208 (50%), Gaps = 3/208 (1%)

Query: 126 TLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           +++K  G  G ++  L V+  M+ ++  +P+ +T   +L  +GR  +   V  ++K + +
Sbjct: 51  SIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLRE 110

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT-D 243
            G   +   Y SL+ A  R R  ++ L  + +MKE G Q S+  YN ++ +    G + +
Sbjct: 111 EGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWE 170

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
              E+FE+MK+ +  QPD +T+++ IT C+      EA  +F +M  +   P+     +L
Sbjct: 171 NILELFEEMKA-QGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNAL 229

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  YGKA   ++    L  +   G  P+
Sbjct: 230 LDVYGKAGWYNEAANVLKEMESAGCLPN 257



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 126/314 (40%), Gaps = 74/314 (23%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+ LI+ YG  G+ D  L++Y+ M   G  P++ T+N LL  + R  R    + I 
Sbjct: 397 DKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELIL 456

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGE--------DTL-------------------- 211
            E+  +   PN   YAS+L AY  A  GE        DTL                    
Sbjct: 457 DELNRSSYKPNDIAYASMLHAY--ANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYS 514

Query: 212 ---------SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------ 256
                      +  M+  G     + +N +++M    G  D+A + F  ++S+       
Sbjct: 515 KCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVV 574

Query: 257 --NC--------------------------QPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
             NC                           PD  +++++I   S  G++S A  +F+EM
Sbjct: 575 TYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEM 634

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 347
           +  G +P+ F   + + CY       + +  +  + + G  PD+     L++   +  K 
Sbjct: 635 VSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKF 694

Query: 348 EELGKLVECVEKSN 361
           EE+ ++++ ++ S+
Sbjct: 695 EEVERILKFIKSSD 708



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 82/173 (47%), Gaps = 1/173 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R+  +  D + F+ +I +YG  G  D   + +  +++ G++P+++TYN L+   GR    
Sbjct: 530 RHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMY 589

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + +   +E    G +P+  +Y +++ +Y +         ++ EM   G+Q     YNT 
Sbjct: 590 RKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTF 649

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           +    + G   EA  + + M  +  C+PD  T+ +++      GK  E E + 
Sbjct: 650 VGCYVNGGMFPEALSVVKHMHKT-GCKPDEVTYRTLVDAYCKIGKFEEVERIL 701



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)

Query: 107 GLYDRA-------RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+ D+A       R+     D   ++ L+ +YG  G +  C     E  A G  P++++Y
Sbjct: 552 GMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSY 611

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++ +  +  +      I+ EM  NG+ P+  TY + +  Y       + LSV + M +
Sbjct: 612 NTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHK 671

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
            G +     Y TL+     +G  +E   I + +KSS+
Sbjct: 672 TGCKPDEVTYRTLVDAYCKIGKFEEVERILKFIKSSD 708


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 119/225 (52%), Gaps = 1/225 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL++  +N     D   ++TLI        ++    V+E+MK++G  P+ +TYN LLD  
Sbjct: 90  GLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVY 149

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           G+++R  +   + +EM  NG SP+  TY SL+ AY R    E+ + +  +M E+G++L V
Sbjct: 150 GKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDV 209

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y  +L+     G  + A  +FE+M+++  C+P+  TF+++I +   RGK +E   +F 
Sbjct: 210 FTYTAMLSGFVRTGKDESAMRVFEEMRTA-GCKPNICTFNALIKMHGNRGKFAEMMKVFE 268

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           E+      P++    +L+  +G+     +V      +  +G  P+
Sbjct: 269 EIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPE 313



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 146/343 (42%), Gaps = 46/343 (13%)

Query: 33  LSFYSKTSLQKRSVSL---QETQSSNPTKHSQNPQY-PHGKTGSSPKSYIWVNPKSPRAS 88
           L  Y K+   K ++ +    E    +P+  + N     + + G   ++    N    R  
Sbjct: 146 LDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGI 205

Query: 89  KLKEKSYD------TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 142
           KL   +Y        R G  E A  +++  R    + +   F+ LIK++G  G F   + 
Sbjct: 206 KLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMK 265

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           V+EE+K     P+++T+N LL   G+     +V  ++KEM   G  P  +TY +L+ AY 
Sbjct: 266 VFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYS 325

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           R    +  +++Y+ M + G+   ++ YN +LA  A  G  +++ +I  +M+    C+P+ 
Sbjct: 326 RCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDG-MCKPNE 384

Query: 263 WTFSSMITICS---------------CRGKVS--------------------EAEAMFNE 287
            T  S++   +               C G +                     EAE  F E
Sbjct: 385 LTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLE 444

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +   GF P+L  L ++I  YG+ Q        LN + E G TP
Sbjct: 445 LKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTP 487



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 92  EKSYDT-----RAGNV-EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 145
           E +Y+T     R G++ E A  +++  ++  +  D   ++TL+ +YG +      + V  
Sbjct: 104 EYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLR 163

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           EM+  G  P+++TYN+L+    R     +   +  +M + G+  +  TY ++L  + R  
Sbjct: 164 EMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTG 223

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             E  + V+ EM+  G + ++  +N L+ M  + G   E  ++FE++K    C PD  T+
Sbjct: 224 KDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKIC-CCVPDIVTW 282

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++++ +    G  SE   +F EM   GF P      +LI  Y +    D  +    R+ +
Sbjct: 283 NTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLD 342

Query: 326 LGITPD 331
            GITPD
Sbjct: 343 TGITPD 348



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 120/235 (51%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V +A  L +    + +  D  A+++LI    + G +   + V+++M+  G KP +I
Sbjct: 10  KEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLI 69

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +L+  G+   PW ++  +++ M + G+ P+  TY +L+    R    E+  +V+ +
Sbjct: 70  TYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFED 129

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G       YNTLL +        EA E+  +M+ +  C P   T++S+I+  +  G
Sbjct: 130 MKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVN-GCSPSIVTYNSLISAYARDG 188

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + EA  + N+M+E G + ++F  T+++  + +  + +  +R    +   G  P+
Sbjct: 189 LLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPN 243



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 2/226 (0%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + +I + G  G      ++   +   G +P++  Y +L+       R  +   ++K+M +
Sbjct: 2   AVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            G  P   TY  +L  YG+     + ++ ++  MK  G+      YNTL+  C      +
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYE 121

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +FEDMKS     PD  T+++++ +     ++ EA  +  EM   G  P++    SL
Sbjct: 122 EAAAVFEDMKSM-GFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSL 180

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           I  Y +    ++ +   N++ E GI  D      +L+   +T K+E
Sbjct: 181 ISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDE 226



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 1/183 (0%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           + E+K  G  P++ T N ++   GR +   +   I   M ++G +P+  TY SL+  + +
Sbjct: 442 FLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQ 501

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           +   E +  V +E+  KG++  +  YNT++      G   EA  IF +M+ S    PD  
Sbjct: 502 SENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRES-GLIPDVI 560

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+++ +   +      EA  +   M++ G +PN     S+I  Y K  R DD ++ ++ L
Sbjct: 561 TYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSL 620

Query: 324 PEL 326
            EL
Sbjct: 621 HEL 623



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 102/214 (47%), Gaps = 5/214 (2%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +  +L+  Y         L + EE+ +  ++P+ +    L+    +     + +  
Sbjct: 382 PNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERA 441

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E+   G SP+ +T  +++  YGR +    T  +   MKE G   S+  YN+L+ M + 
Sbjct: 442 FLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQ 501

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNL 297
               + + E+ +++  ++  +PD  +++++I    CR G++ EA  +F+EM E+G  P++
Sbjct: 502 SENFERSEEVLKEI-LAKGIKPDIISYNTVI-FAYCRNGRMKEASHIFSEMRESGLIPDV 559

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               + +  Y      ++ +  +  + + G  P+
Sbjct: 560 ITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPN 593



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 1/150 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D +  + +I +YG          +   MK  G  P++ TYN+L+    +++   + + + 
Sbjct: 453 DLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVL 512

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KE+   G+ P+  +Y +++ AY R    ++   ++ EM+E G+   V  YNT +A  A  
Sbjct: 513 KEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAAD 572

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
              +EA ++   M     C+P+  T++S+I
Sbjct: 573 SMFEEAIDVVCYM-IKHGCKPNQNTYNSVI 601



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 67/129 (51%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++L+ ++  + NF+    V +E+ A G+KP++I+YN ++    R  R  +   I+ EM 
Sbjct: 492 YNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMR 551

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           ++GL P+  TY + + +Y      E+ + V   M + G + +   YN+++     +   D
Sbjct: 552 ESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRD 611

Query: 244 EAFEIFEDM 252
           +A +    +
Sbjct: 612 DAIKFISSL 620



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 46/100 (46%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  Y   G      +++ EM+  G+ P++ITYN  + +        +   + 
Sbjct: 523 DIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVV 582

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             M  +G  PN NTY S++  Y +    +D +     + E
Sbjct: 583 CYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSLHE 622


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 118/494 (23%), Positives = 210/494 (42%), Gaps = 81/494 (16%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +++LI+ Y  AGN  G   V+++M+  G  P++ TY+ LL   G      QV++++
Sbjct: 257 DIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLF 316

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M +    P   TY SL++ +G   Y +++++++ +M + G++     Y+ LL++C   
Sbjct: 317 SDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRG 376

Query: 240 GYTDEAFEIFEDMKSSENC----------------------------------QPDSWTF 265
           G T EA +I + M ++E+                                    P    +
Sbjct: 377 GLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAY 436

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
            ++I   +  G   EA +    M +AGF+  +  + S+++ Y K    D+ +   + L +
Sbjct: 437 DALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQ 496

Query: 326 L-GITPDDRFCGCLLNV-----MTQTPKEEL----------GKLVECVEKS----NSKLG 365
             G   D+R    LL V     + +  KEE           G  V C+  S     SK  
Sbjct: 497 KEGSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWD 556

Query: 366 YVVKLLLE-------EQDIEG--------DFKKEATEL-FNSIS-KDVKKA--YCNCLID 406
           Y  +LL E        Q + G        DF  +  E  F+ +  +D++++  + N L++
Sbjct: 557 YATQLLDEMIAAGGLHQVVVGIVRGTYDADFSWQVVEYAFDGLKLRDMEESMDFYNALVE 616

Query: 407 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 466
           L V  N    A ++L   +    + +   ++   WS+++  +S GA +TAL  W NDL +
Sbjct: 617 LLVYCNQKARAARVLADAMQRGAFPEAFIKTRRVWSVNVHRMSAGATVTALSTWFNDLQE 676

Query: 467 ALESGEEFPPLLGINTGHG----KHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTT 522
                E+ P +  I    G      K  D  +A V ++ LK   AP   +    G  +  
Sbjct: 677 C----EKLPFMTSIVVSCGDIEDHRKVEDLPVAKVVQAFLKHYAAPLETASWNEGRIVCK 732

Query: 523 EAAAKSWLESRSSL 536
             A K WL S  S 
Sbjct: 733 GEALKPWLSSMPSF 746



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 126/247 (51%), Gaps = 6/247 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKP 154
           R G  E +  L   AR +K R++PN   ++T++      G +++G LN++ +M+  G++P
Sbjct: 129 RNGQYEASLHLL--ARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQP 186

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ITYN LL          Q   ++K M ++G+  +  TY SL+  +  +        + 
Sbjct: 187 DLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELL 246

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           REM+++G    +  YN+L+   AD G    A  +F+ M+    C PD  T+S+++ I   
Sbjct: 247 REMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRG-GCAPDVETYSTLLRIYGN 305

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           +G   +  ++F++M E    P +    SLIQ +G+     + +   + + + G+ PDD  
Sbjct: 306 QGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDAT 365

Query: 335 CGCLLNV 341
              LL+V
Sbjct: 366 YSALLSV 372



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 1/231 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G VE A  ++          D   + +L+  +  +        +  EM+  G  P++  Y
Sbjct: 202 GLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGY 261

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N+L++    A        ++K+M   G +P+  TY++LLR YG     E   S++ +MKE
Sbjct: 262 NSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKE 321

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
                +V  YN+L+ +  + GY  E+  +F DM  S   +PD  T+S+++++C   G   
Sbjct: 322 LSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDS-GVKPDDATYSALLSVCGRGGLTR 380

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           EA  +   ML     P+L     LI  YGK     D + +  R+ E G+ P
Sbjct: 381 EAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDP 431



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 7/212 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           FS + + +    ++   L +++ M +    KP    Y  ++  MGR     +   I+++M
Sbjct: 49  FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDM 108

Query: 183 TDNGLSPNWNTYA--SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
            +N +   WN YA  +L+ AYGR    E +L +   MK++ ++ ++  YNT+L  C+  G
Sbjct: 109 PENDV--KWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGG 166

Query: 241 YTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              E    +F  M+  E  QPD  T++++++ CS RG V +A  +F  M E+G   +   
Sbjct: 167 LDWEGLLNLFAQMR-HEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVT 225

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SL+  +  + +   V   L  + + G +PD
Sbjct: 226 YKSLVDTFAGSNQLGRVEELLREMEDEGNSPD 257


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 160/344 (46%), Gaps = 37/344 (10%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A +  ++  G AG  D C+  YE M A  ++P ++T++ L+   G  +R    +  ++EM
Sbjct: 96  ACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 155

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            + G++P+     SL+ A+ +A   +  L V+ +M   G+  SV  +NTL+  C   G  
Sbjct: 156 LEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDI 215

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A ++F  + S     P+  TFS++I   + +G+V EA +   EM   G EPN    ++
Sbjct: 216 DRARQVFSRL-SQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSA 274

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 362
           LI   G+A +     + L+ +   GI P         NV+T T       L++   K   
Sbjct: 275 LINACGRAGQLARAFQTLDEMFGTGIEP---------NVVTWT------TLIDACGKGK- 318

Query: 363 KLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
           +L +  KL  E         +E   + N ++       C+ L+D C+  + L+ A  +LE
Sbjct: 319 ELEWSFKLFKE--------MRERGTVPNGVT-------CSALMDACLKADELDLAFAVLE 363

Query: 423 LGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 466
             L +     I+    T  SL  +   LG A  A  I +++L+K
Sbjct: 364 HMLDV----GIEPTEVTYTSLLTQCARLGQADRA-GIVLDELNK 402



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 112/214 (52%), Gaps = 7/214 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A ++LI  +  AG+ D  L V+++M   GV P++IT+N L+D  GRA    + + ++
Sbjct: 163 DVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVF 222

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             ++  GLSPN  T+++L+ ++      ++  S  +EM+ +G++ +   Y+ L+  C   
Sbjct: 223 SRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRA 282

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE---AMFNEMLEAGFEPN 296
           G    AF+  ++M  +   +P+  T++++I  C   GK  E E    +F EM E G  PN
Sbjct: 283 GQLARAFQTLDEMFGT-GIEPNVVTWTTLIDAC---GKGKELEWSFKLFKEMRERGTVPN 338

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               ++L+    KA   D     L  + ++GI P
Sbjct: 339 GVTCSALMDACLKADELDLAFAVLEHMLDVGIEP 372



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG+++ A  ++ R        +   FS LI  +   G  D   +  +EM+A G++PN +
Sbjct: 211 RAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRV 270

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  GRA +  +      EM   G+ PN  T+ +L+ A G+ +  E +  +++EM
Sbjct: 271 TYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEM 330

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G   +    + L+  C      D AF + E M      +P   T++S++T C+  G+
Sbjct: 331 RERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDV-GIEPTEVTYTSLLTQCARLGQ 389

Query: 278 VSEAEAMFNEM 288
              A  + +E+
Sbjct: 390 ADRAGIVLDEL 400



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN---NLLDTMGRAKRPW 173
           WR++    S L++L+G A   D    V E M      P+  T+    N +DT G   +  
Sbjct: 538 WRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAV 597

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           ++    +    +G   N  TY++LL A GRA+       + + M+E G++ +   Y  L+
Sbjct: 598 ELMERSR-AEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALM 656

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            +C     +  A E+FE M+ +E  +P   +++S++   S
Sbjct: 657 EVCRHSRDSKAAVEVFEAME-TEGVRPGVRSYTSLLKAIS 695



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA--IGVKPN 155
           +A  V+ AF + +     +   D   +  L+    TAG  D  + + E  +A   G + N
Sbjct: 554 QADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEIN 613

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TY+ LL   GRAK+  +   I + M + G+ P   TY +L+     +R  +  + V+ 
Sbjct: 614 ELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFE 673

Query: 216 EMKEKGMQLSVTLYNTLL 233
            M+ +G++  V  Y +LL
Sbjct: 674 AMETEGVRPGVRSYTSLL 691



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 25/205 (12%)

Query: 101  NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM----KAIGVKPNM 156
            N+   F ++   R+   R D  A++ L+      G FD  L V   M    +  G++P+ 
Sbjct: 874  NLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDA 933

Query: 157  ITYNNLLDTMGRAKRPW--QVKTIYKEMTD--NGLS----PNWNTYASLLRA------YG 202
            +TY +L+    RA  P   + + I+  M    N  S    P   TYA L+RA      YG
Sbjct: 934  VTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYG 993

Query: 203  RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            RA      L ++R+    G+          LA C   G  D A ++++ M+     +P+S
Sbjct: 994  RA------LEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREG-GIRPNS 1046

Query: 263  WTFSSMITICSCRGKVSEAEAMFNE 287
                 ++ +C   G  S A  +  E
Sbjct: 1047 RALLDLVNLCRANGLQSVAARIMRE 1071



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 21/178 (11%)

Query: 143  VYEEMKAIGVKPNMITYNNLLDT---MGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLL 198
            V++EM++ GV+P++  YN L++T   +G   R   V + +  +    GL P+  TY SL+
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 199  RAYGRA---RYGEDTLSVYREMKEKGMQLS-------VTLYNTLLA--MCADVGYTDEAF 246
            +A  RA   R  E+   ++  M+++    S       VT  + + A  M  D G    A 
Sbjct: 941  KAAARAVPPRV-EEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYG---RAL 996

Query: 247  EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
            EI+    S+    P   +  + +  C   G V  A  +++ M E G  PN   L  L+
Sbjct: 997  EIWRQQLSA-GVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLV 1053



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 10/142 (7%)

Query: 65  YPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWR 118
           + H   G   +++ W+     R  +    +Y        RAG +  AF   D        
Sbjct: 242 HSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTG-- 299

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN   ++TLI   G     +    +++EM+  G  PN +T + L+D   +A       
Sbjct: 300 IEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAF 359

Query: 177 TIYKEMTDNGLSPNWNTYASLL 198
            + + M D G+ P   TY SLL
Sbjct: 360 AVLEHMLDVGIEPTEVTYTSLL 381



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 3/149 (2%)

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           ++LL   G+A +      + + M +   SP+  T+  LL A   A   +  + +    + 
Sbjct: 546 SDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRA 605

Query: 220 KGM--QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +G   +++   Y+ LL  C        AF I + M+ +   +P   T+ +++ +C     
Sbjct: 606 EGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRET-GVKPTEGTYLALMEVCRHSRD 664

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
              A  +F  M   G  P +   TSL++ 
Sbjct: 665 SKAAVEVFEAMETEGVRPGVRSYTSLLKA 693


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/422 (22%), Positives = 189/422 (44%), Gaps = 8/422 (1%)

Query: 116  KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
            +++ D + +++++KLY   G+F     VY+ ++  G+KP+  TYN L+    R +RP + 
Sbjct: 917  RFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEG 976

Query: 176  KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             ++  EM   GL P  +TY SL+ A+G+ +  E    ++  +  K  +L  + Y+ ++ M
Sbjct: 977  LSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKM 1036

Query: 236  CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              + G   +A ++   MK +   +P   T   ++   S  G+  EAE + + +   G   
Sbjct: 1037 FRNSGNHSKAEKLLGVMKEA-GVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPL 1095

Query: 296  NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV--MTQTPKEELGKL 353
            +    +S+I  Y K    +  ++ L  + + G+ PD R   C +    ++Q   E +  L
Sbjct: 1096 STLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAI-VL 1154

Query: 354  VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNL 413
            ++ +  +   L   ++LL E+ D          E    +  +    + N L DL     L
Sbjct: 1155 LKALRDTGFDLP--IRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFEL 1212

Query: 414  LENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGE 472
               A  + +L +   +Y  D+   +   W    + +S G+AL  L +W++ +  A   G 
Sbjct: 1213 RATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQDASLQGY 1272

Query: 473  EFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLES 532
               P   +    G  +Y+   L S  ++ L E+ +PF     + G  +    + + WL+ 
Sbjct: 1273 PLSP-KSVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMWLKD 1331

Query: 533  RS 534
             S
Sbjct: 1332 SS 1333



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 1/241 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L +  R    + D   ++TLI       N +  + VY +M A   +P++ TYN ++
Sbjct: 277 LAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMI 336

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR     +   ++K++   G  P+  TY SLL A+ R    +    +  +M + G  
Sbjct: 337 SVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFG 396

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M    G  D AF+++ DMK S    PD+ T++ +I        + EA  
Sbjct: 397 KDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGR-SPDAVTYTVLIDSLGKANMIKEAAE 455

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           + +EML A  +P L   ++LI  Y KA +  +     + +   GI PD      +L+++ 
Sbjct: 456 VMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILL 515

Query: 344 Q 344
           +
Sbjct: 516 R 516



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 122/264 (46%), Gaps = 2/264 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R  N+E A  +Y+     + + D   ++ +I +YG  G       +++++++ G  P+ 
Sbjct: 305 SRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDA 364

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN+LL    R     +VK I ++M   G   +  TY +++  YG+    +    +Y +
Sbjct: 365 VTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSD 424

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G       Y  L+          EA E+  +M ++   +P   TFS++I   +  G
Sbjct: 425 MKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNA-RVKPTLRTFSALICGYAKAG 483

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  EAE  F+ ML +G +P+    + ++    +   +   ++    +      PD     
Sbjct: 484 KRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYE 543

Query: 337 CLLNVMTQTPKEE-LGKLVECVEK 359
            +L V+ +  +EE + K+V+ +E+
Sbjct: 544 VMLRVLGKENREEDVHKVVKDMEE 567



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 111/242 (45%), Gaps = 1/242 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G    A  L+    ++ +  D   +++L+  +   GN D    + E+M  +G   + +
Sbjct: 341 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 400

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++   G+  +      +Y +M  +G SP+  TY  L+ + G+A   ++   V  EM
Sbjct: 401 TYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEM 460

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
               ++ ++  ++ L+   A  G   EA E F+ M  S   +PD   +S M+ I     +
Sbjct: 461 LNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRS-GIKPDHLAYSVMLDILLRFNE 519

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             +A  ++ EM+   F+P+  +   +++  GK  R +DV + +  + EL        C  
Sbjct: 520 SGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSI 579

Query: 338 LL 339
           L+
Sbjct: 580 LV 581



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/212 (18%), Positives = 98/212 (46%), Gaps = 1/212 (0%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +D   ++ LI  Y  +G ++    ++  M   G  P + + N L+  +    R  ++  +
Sbjct: 780 VDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVV 839

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +E+ D G   + ++   +L A+  A    +   +Y+ MK  G   ++ LY  ++ + A 
Sbjct: 840 IQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAK 899

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                +   +  +M+ +   +PD   ++S++ + +  G   +   ++  + EAG +P+  
Sbjct: 900 GKRVRDVEAMVSEMEVA-RFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDED 958

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              +LI  Y + +R ++ +  ++ +  +G+ P
Sbjct: 959 TYNTLILMYCRDRRPEEGLSLMHEMRRVGLEP 990



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 39/181 (21%)

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           SPN    A++L   G+A      + ++    E     +V +YN ++ + A  G   +  E
Sbjct: 185 SPNARMLATILSVLGKANQEALAVEIFAR-AEAASGNTVQVYNAMMGVYARTGRFTKVQE 243

Query: 248 IFEDMKSSENC-------------------------------------QPDSWTFSSMIT 270
           +  D+  S  C                                     QPD  T++++I+
Sbjct: 244 LL-DLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLIS 302

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            CS    + EA  ++N+M+    +P+L+   ++I  YG+   + +  R    L   G  P
Sbjct: 303 ACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLP 362

Query: 331 D 331
           D
Sbjct: 363 D 363


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 19/353 (5%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G++E +  L+ + R      D   +++LI  YG  G+ +   +++ EMK +G  P
Sbjct: 298 YLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVP 357

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ITYN L++   + ++  +    + EM +NGL PN  TY++L+ A+ +    +  + ++
Sbjct: 358 DIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLF 417

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M+  G+  +   Y +L+      G   EA+++  DM  +   + +  T+++++     
Sbjct: 418 VDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA-GVKLNIVTYTALLDGLCK 476

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G++ EAE +F  ML+ G  PN  V T+L+  Y KA+R +D ++ L ++ E  I PD   
Sbjct: 477 AGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLIL 536

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK----KEATELFN 390
            G ++       K E  KL+  +E+  S+ G     ++    I+  FK     +A   F 
Sbjct: 537 YGSIIWGHCSQRKLEETKLI--LEEMKSR-GISANPVISTTIIDAYFKAGKSSDALNFFQ 593

Query: 391 SISKDVKKA----YCNCLIDLCVNLNLLENA----CKLLELGL--TLEVYTDI 433
            +     +A    YC  LID      ++E A    C++L LGL   + VYT +
Sbjct: 594 EMQDVGVEATIVTYC-VLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSL 645



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 155/345 (44%), Gaps = 22/345 (6%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G +E A   + R RN  +R  P A S   L+     +GN       + +M   G+ P++ 
Sbjct: 233 GLLEEANECFSRMRN--FRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVF 290

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++D + +       + ++ +M + GLSP+  TY SL+  YG+    E+  S++ EM
Sbjct: 291 TYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM 350

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+ G    +  YN L+           AFE F +MK++   +P+  T+S++I      G 
Sbjct: 351 KDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNN-GLKPNVVTYSTLIDAFCKEGM 409

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  +F +M   G  PN F  TSLI    KA    +  + LN + + G+         
Sbjct: 410 MQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVK-------- 461

Query: 338 LLNVMTQTPKEE----LGKLVECVEKSNSKL--GYVVKLLLEEQDIEGDFKKEATELFNS 391
            LN++T T   +     G+++E  E   S L  G      +    + G  K E  E    
Sbjct: 462 -LNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 520

Query: 392 ISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436
           I K + +  CN   DL +  +++   C   +L  T  +  +++SR
Sbjct: 521 ILKQMTE--CNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSR 563



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           +P   +T+I  Y  AG     LN ++EM+ +GV+  ++TY  L+D + +A         +
Sbjct: 568 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYF 627

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   GL PN   Y SL+    +    E    ++ EM+ +GM   +T +  L+      
Sbjct: 628 CRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKH 687

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA  +   M +    + D   ++S+++  S  G++ +A   FNEM+E G  P   +
Sbjct: 688 GNLQEALVLISRM-TELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVL 746

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              L++ Y K  + D+ +   N +  +G+  +
Sbjct: 747 CICLLREYYKRGQLDEAIELKNEMERMGLITE 778



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 6/219 (2%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           + EEMK+ G+  N +    ++D   +A +       ++EM D G+     TY  L+    
Sbjct: 556 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 615

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +A   E  +  +  M   G+Q +V +Y +L+         + A ++F++M+      PD 
Sbjct: 616 KAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQ-CRGMTPDI 674

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             F+++I      G + EA  + + M E   E +L V TSL+  + +        +  N 
Sbjct: 675 TAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNE 734

Query: 323 LPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           + E GI P++  C CLL    +      G+L E +E  N
Sbjct: 735 MIEKGILPEEVLCICLLREYYKR-----GQLDEAIELKN 768



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 67/156 (42%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG VE+A   + R  +   + +   +++LI         +    +++EM+  G+ P++ 
Sbjct: 616 KAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDIT 675

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  L+D   +     +   +   MT+  +  + + Y SL+  + +          + EM
Sbjct: 676 AFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEM 735

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
            EKG+     L   LL      G  DEA E+  +M+
Sbjct: 736 IEKGILPEEVLCICLLREYYKRGQLDEAIELKNEME 771



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 51/121 (42%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +E A  L+D  +      D  AF+ LI      GN    L +   M  + ++ ++  Y +
Sbjct: 655 IESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTS 714

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+    +     Q +  + EM + G+ P       LLR Y +    ++ + +  EM+  G
Sbjct: 715 LVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMG 774

Query: 222 M 222
           +
Sbjct: 775 L 775


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 132/266 (49%), Gaps = 4/266 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R     +A  L D+   + + +D  A++T++  Y   G ++  +N++E MK +G  P ++
Sbjct: 194 RESQYSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLV 253

Query: 158 TYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +LD  G+  R W+ +  + +EM   GL  +  T +++L A  R     +    + E
Sbjct: 254 TYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAE 313

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K  G +     YN LL +    G   EA  + ++M+ + NC  DS T++ ++   +  G
Sbjct: 314 LKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEEN-NCPADSVTYNELVAAYARAG 372

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              EA  +   M + G  PN    T++I  YGKA + D+ ++    + E G  P+     
Sbjct: 373 FSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYN 432

Query: 337 CLLNVMTQTPKE-ELGKLVECVEKSN 361
            +L+++ +  +  E+ K++ C  KSN
Sbjct: 433 AVLSMLGKKSRSNEMIKML-CDMKSN 457



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 1/221 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L++++G AG +   L+V +EM+      + +TYN L+    RA    +   + + MT
Sbjct: 326 YNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMT 385

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ PN  TY +++ AYG+A   ++ L ++  MKE G   +   YN +L+M      ++
Sbjct: 386 QKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSN 445

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           E  ++  DMKS+  C P+  T+++++ +C  +G       +F EM   GFEP+     +L
Sbjct: 446 EMIKMLCDMKSN-GCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTL 504

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           I  YG+     D  +    +   G          LLN + +
Sbjct: 505 ISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALAR 545



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 105/263 (39%), Gaps = 38/263 (14%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP---- 172
           + PNA  ++T+I  YG AG  D  L ++  MK  G  PN  TYN +L  +G+  R     
Sbjct: 389 VMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMI 448

Query: 173 -----------------WQ--------------VKTIYKEMTDNGLSPNWNTYASLLRAY 201
                            W               V  +++EM   G  P+ +T+ +L+ AY
Sbjct: 449 KMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAY 508

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           GR     D   +Y EM   G    VT YN LL   A  G       +  DMK S+  +P 
Sbjct: 509 GRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMK-SKGFKPT 567

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             ++S M+   +  G     E +   + E    P+  +L +L+    K +      RA  
Sbjct: 568 ETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFT 627

Query: 322 RLPELGITPDDRFCGCLLNVMTQ 344
              + G  PD      +L++ T+
Sbjct: 628 LFKKHGYKPDMVIFNSMLSIFTR 650



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 94/180 (52%), Gaps = 6/180 (3%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E AF L+   +   ++ D   F++++ ++     +D    + + +   G+ P+++TYN+L
Sbjct: 623 ERAFTLF---KKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSL 679

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +D   R    W+ + I K +  + L P+  +Y ++++ + R    ++ + +  EM E+G+
Sbjct: 680 MDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGI 739

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEA 281
           +  +  YNT ++    +G   E  ++ E M +  +C+P+  TF  M+    CR GK SEA
Sbjct: 740 RPCIFTYNTFVSGYTAMGMYGEIEDVIECM-AKNDCRPNELTF-KMVVDGYCRAGKYSEA 797



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 99/207 (47%), Gaps = 1/207 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L+      G++    NV  +MK+ G KP   +Y+ +L    +      ++ I + + 
Sbjct: 536 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGIN 595

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  + P+W    +LL A  + R    +   +   K+ G +  + ++N++L++       D
Sbjct: 596 EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 655

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  I + +   +   PD  T++S++ +   RG+  +AE +   + ++  +P+L    ++
Sbjct: 656 QAEGILQSIH-EDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTV 714

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           I+ + +     + VR L+ + E GI P
Sbjct: 715 IKGFCRKGLMQEAVRMLSEMTERGIRP 741



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 87/195 (44%), Gaps = 1/195 (0%)

Query: 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           G    +   K  G KP+M+ +N++L    R     Q + I + + ++GL+P+  TY SL+
Sbjct: 621 GSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLM 680

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             Y R         + + +++  ++  +  YNT++      G   EA  +  +M +    
Sbjct: 681 DMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEM-TERGI 739

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           +P  +T+++ ++  +  G   E E +   M +    PN      ++  Y +A +  + + 
Sbjct: 740 RPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMD 799

Query: 319 ALNRLPELGITPDDR 333
            ++++       DD+
Sbjct: 800 FVSKIKTFDPCFDDQ 814


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 190/422 (45%), Gaps = 43/422 (10%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G+++ A G++ + +      +   +S L+ LYG  G +D   +++ EMK    +PN 
Sbjct: 333 AQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNA 392

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN L++  G      +V T++ +M +  + PN  TY  L+ A G+    ED   +   
Sbjct: 393 ATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLH 452

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M EKG+  S   Y  ++         +EA   F  M      +P   T++S+I + +  G
Sbjct: 453 MNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEV-GSKPTVETYNSLIQMFAKGG 511

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              E+EA+  +M ++G   N      +I+ + +  + ++ ++A   + +    PD++   
Sbjct: 512 LYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLE 571

Query: 337 CLLNV-----MTQTPKEELGKLVECVEKSNSKLGYVVKL--------------LLEE--- 374
            +L+V     + +  +E+ G+ ++ +    S + Y + L              LL+E   
Sbjct: 572 AVLSVYCFAGLVEESEEQFGE-IKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFT 630

Query: 375 -----------QDIEGDFKKEAT-ELFNSISKDVKKAYC-------NCLIDLCVNLNLLE 415
                      Q I GD+  ++  ++   + + +K   C       N L++    L   E
Sbjct: 631 NRVSNIHQVIGQMIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKE 690

Query: 416 NACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFP 475
            A ++L       ++ ++  ++   WS+ +  +  GAA TA+ +W+N++ +   SG++ P
Sbjct: 691 RATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGAACTAISVWLNNMHEMFISGDDLP 750

Query: 476 PL 477
            L
Sbjct: 751 QL 752



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 1/231 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E   GL+ + R+E  + D   ++TL+      G  D    V+  M   G+ P++ TY+ L
Sbjct: 234 EELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYL 293

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++T G+  R  +V  + KEM   G  P+  +Y  LL A+ ++   ++ + V+R+M+  G 
Sbjct: 294 VETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGC 353

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
             +   Y+ LL +    G  D+  ++F +MK S N +P++ T++ +I +    G   E  
Sbjct: 354 VPNAATYSILLNLYGRHGRYDDVRDLFLEMKVS-NTEPNAATYNILINVFGEGGYFKEVV 412

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            +F++M+E   EPN+     LI   GK    +D  + L  + E G+ P  +
Sbjct: 413 TLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSK 463



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 5/240 (2%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           K ++  N F+ + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 105 KNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEK 164

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            + I+ EM  +G++P+  ++ +L+ AYGR    + +L +   MK++ +  S+  YNT++ 
Sbjct: 165 CQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVIN 224

Query: 235 MCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            CA  G   +E   +F  M+  E  Q D  T++++++ C+ RG   EAE +F  M E G 
Sbjct: 225 SCARGGLDWEELLGLFAQMR-HEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGI 283

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELG 351
            P++   + L++ +GK  R + V   L  +   G  PD      LL    Q+   KE +G
Sbjct: 284 LPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMG 343



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 116/237 (48%), Gaps = 6/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKP 154
           R G  + +  L DR + E  R+ P+   ++T+I      G +++  L ++ +M+  G++ 
Sbjct: 193 RNGQYKSSLELLDRMKKE--RVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQA 250

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++TYN LL    R     + + +++ M + G+ P+  TY+ L+  +G+    E    + 
Sbjct: 251 DIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELL 310

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           +EM+  G    +T YN LL   A  G   EA  +F  M+ +  C P++ T+S ++ +   
Sbjct: 311 KEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGA-GCVPNAATYSILLNLYGR 369

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+  +   +F EM  +  EPN      LI  +G+     +VV   + + E  + P+
Sbjct: 370 HGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPN 426



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 2/223 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKE 181
           +F+ LI  YG  G +   L + + MK   V P+++TYN ++++  R    W+ +  ++ +
Sbjct: 183 SFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQ 242

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G+  +  TY +LL A  R   G++   V+R M E G+   +T Y+ L+     +  
Sbjct: 243 MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 302

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++  E+ ++M+S  +  PD  +++ ++   +  G + EA  +F +M  AG  PN    +
Sbjct: 303 LEKVSELLKEMESGGSF-PDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYS 361

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            L+  YG+  R DDV      +      P+      L+NV  +
Sbjct: 362 ILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGE 404


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 172/402 (42%), Gaps = 25/402 (6%)

Query: 107 GLYDRARN-----EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G YD  R+     +    DP+A  ++ LI+++G  G F   + ++ +M    V+PNM TY
Sbjct: 361 GRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETY 420

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+   G+       K I   M + G+ P+   Y  ++ A+G+A   E+ L V+  M E
Sbjct: 421 EGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNE 480

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +V  YN+ +   A  G   EA  I   M  S   + D  +F+ +I      G+  
Sbjct: 481 VGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNES-GLKRDVHSFNGVIKAFRQGGQYE 539

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA   + EM +A  EPN   L  ++  Y  A   D+       +   GI P    C CL+
Sbjct: 540 EAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPS-VMCYCLM 598

Query: 340 NVM---TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT--------EL 388
             +        +    + E +    S +   +      Q I+GDF  E+         + 
Sbjct: 599 LALYAKNDRLNDAYNLIDEMITMRVSDIHQGIG-----QMIKGDFDDESNWQIVEYVFDK 653

Query: 389 FNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL 448
            NS    +   + N L++    +   E A ++L       ++ ++  +S   WS+ +  +
Sbjct: 654 LNSEGCGLGMRFYNALLEALWWMFQRERAARVLNEASKRGLFPELFRKSKLVWSVDVHRM 713

Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS 490
           S G ALTAL +W+N++ +   +G + P L  +    G  + S
Sbjct: 714 SEGGALTALSVWLNNMHEMSRTGNDLPELATVVVVRGHMEKS 755



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKP 154
           R G    +  L +  + E  R+ P+   ++T+I      G +++G L ++ EM+  G++P
Sbjct: 183 RNGQFHASLELLNGMKQE--RVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP 240

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ITYN LL          + + +++ M ++G+ P+ NTY+ L++ +G+    E    + 
Sbjct: 241 DVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELL 300

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           REM+  G    +T YN LL   A++G   EA ++F  M+++  C  ++ T+S ++ +   
Sbjct: 301 REMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAA-GCVANAATYSVLLNLYGK 359

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+  +   +F EM  +  +P+      LIQ +G+     +VV   + + E  + P+
Sbjct: 360 HGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPN 416



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 120/245 (48%), Gaps = 8/245 (3%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           K ++  N F+ + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 95  KNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDK 154

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            + ++ EM  NG++     Y +++ AYGR      +L +   MK++ +  S+  YNT++ 
Sbjct: 155 CREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVIN 214

Query: 235 MCADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            CA  G   E    +F +M+  E  QPD  T+++++  C+ RG   EAE +F  M E+G 
Sbjct: 215 ACARGGLDWEGLLGLFAEMR-HEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGI 273

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
            P++   + L+Q +GK  R + V   L  +   G  PD      LL         ELG +
Sbjct: 274 VPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYA-----ELGSI 328

Query: 354 VECVE 358
            E ++
Sbjct: 329 KEAMD 333



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 143/319 (44%), Gaps = 6/319 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++ L++ Y   G+    ++V+ +M+A G   N  TY+ LL+  G+  R   V+ I+
Sbjct: 311 DITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIF 370

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM  +   P+  TY  L++ +G   Y ++ ++++ +M E+ ++ ++  Y  L+  C   
Sbjct: 371 LEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKG 430

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A +I   M + +   P S  ++ +I          EA  +FN M E G  P +  
Sbjct: 431 GLYEDAKKILLHM-NEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVET 489

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPKEELGKLVECVE 358
             S I  + +     +    L+R+ E G+  D   F G +         EE  K    +E
Sbjct: 490 YNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEME 549

Query: 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI--SKDVKKAYCNCL-IDLCVNLNLLE 415
           K+N +   +   ++           E+ E F  I  S  +    C CL + L    + L 
Sbjct: 550 KANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRLN 609

Query: 416 NACKLLELGLTLEVYTDIQ 434
           +A  L++  +T+ V +DI 
Sbjct: 610 DAYNLIDEMITMRV-SDIH 627



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 145/328 (44%), Gaps = 7/328 (2%)

Query: 100 GNVEMAFGLYDRARNEKW-RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G+ + +  L+   + + W + + + ++ +I L G  G  D C  V++EM + GV   +  
Sbjct: 114 GDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYV 173

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREM 217
           Y  +++  GR  +      +   M    +SP+  TY +++ A  R     E  L ++ EM
Sbjct: 174 YTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEM 233

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+Q  V  YNTLL  CA  G  DEA  +F  M  S    PD  T+S ++       +
Sbjct: 234 RHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNES-GIVPDINTYSYLVQTFGKLNR 292

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +   +  EM   G  P++     L++ Y +     + +    ++   G   +      
Sbjct: 293 LEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSV 352

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           LLN+  +  + +++  +   ++ SN+        +L +   EG + KE   LF+ + ++ 
Sbjct: 353 LLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEEN 412

Query: 397 KKAYCNC---LIDLCVNLNLLENACKLL 421
            +        LI  C    L E+A K+L
Sbjct: 413 VEPNMETYEGLIFACGKGGLYEDAKKIL 440



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 90/211 (42%), Gaps = 8/211 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  + A  +  R      + D ++F+ +IK +   G ++  +  Y EM+    +PN +
Sbjct: 499 RGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNEL 558

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T   +L     A    + +  ++E+  +G+ P+   Y  +L  Y +     D  ++  EM
Sbjct: 559 TLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEM 618

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEA-FEIFE---DMKSSENCQPDSWTFSSMITICS 273
               + + V+  +  +       + DE+ ++I E   D  +SE C      +++++    
Sbjct: 619 ----ITMRVSDIHQGIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALW 674

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
              +   A  + NE  + G  P LF  + L+
Sbjct: 675 WMFQRERAARVLNEASKRGLFPELFRKSKLV 705


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 136/261 (52%), Gaps = 3/261 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V  A+ LY++  +     +   +++LI+ +   G  +    +Y+EM   G  P+++
Sbjct: 493 RHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLM 552

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             NN +D + +A    + + +++E+   GL+P+  +Y+ L+    +  + +DT  ++ EM
Sbjct: 553 LLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEM 612

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G+ L    YN ++      G  ++A+++ E+MK ++  QP   T+ S+I   +   +
Sbjct: 613 KEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMK-TKGLQPTVVTYGSVIDGLAKIDR 671

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F E      + N+ V +SLI  +GK  R D+    L  L + G+TP+     C
Sbjct: 672 LDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNC 731

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           LL+ + +   EE+ + + C +
Sbjct: 732 LLDALVKA--EEIDEALVCFQ 750



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 2/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+ A  L++   + K      A++T+I  YG+ G F+   ++ E  K  G  P++I
Sbjct: 319 KAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVI 378

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +L  +GR  +  +   I + M  +  +PN  +Y  L+    +A   E  L V   M
Sbjct: 379 AYNCILTCLGRKGKVEEALRILEAMKMDA-APNLTSYNILIDMLCKAGELEAALKVQDSM 437

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G+  ++   N ++         DEA  IF  +   + C PDS TF S+I      GK
Sbjct: 438 KEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGL-DHKVCTPDSVTFCSLIDGLGRHGK 496

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V++A  ++ +ML++G  PN  V TSLI+ + K  R +D  +    +   G +PD
Sbjct: 497 VNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPD 550



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 3/240 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G V+ A  L D  ++  +  D   ++  I  +G  G  D     + E+K+ G+ P+ 
Sbjct: 248 AREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDD 307

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+ +++  + +A+R  +   +++E+  N   P    Y +++  YG      +  S+   
Sbjct: 308 VTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLER 367

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            K KG   SV  YN +L      G  +EA  I E MK   +  P+  +++ +I +    G
Sbjct: 368 QKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKM--DAAPNLTSYNILIDMLCKAG 425

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 335
           ++  A  + + M EAG  PN+  +  +I    KAQR D+       L     TPD   FC
Sbjct: 426 ELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFC 485



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 111/236 (47%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G  +  + L+   + +   +D  A++ +I  +  +G  +    + EEMK  G++P +
Sbjct: 597 VKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTV 656

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++D + +  R  +   +++E     +  N   Y+SL+  +G+    ++   +  E
Sbjct: 657 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEE 716

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           + +KG+  +   +N LL         DEA   F++MK+ + C P+  T+S M+  +C  R
Sbjct: 717 LMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLK-CPPNEVTYSIMVNGLCKVR 775

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + EM + G +PN    T++I    +     +      R    G  PD
Sbjct: 776 -KFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPD 830



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 148/363 (40%), Gaps = 52/363 (14%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R  K    P A++ L+ L     N +    + EEM   G  P+  T   ++ +  ++++ 
Sbjct: 124 RKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKL 183

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   + + M      P ++ Y +L+ A   A   +  L++ R+M+E G +++V L+ TL
Sbjct: 184 REAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTL 243

Query: 233 LAMCADVGYTDEAFEIFEDMKS----------------------------------SENC 258
           + + A  G  D A  + ++MKS                                  S+  
Sbjct: 244 ICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGL 303

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            PD  TF+SMI +     +V EA  +F E+      P ++   ++I  YG   + ++   
Sbjct: 304 VPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYS 363

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS----KLGYVVKLLLE 373
            L R    G  P      C+L  + +  K EE  +++E ++   +        ++ +L +
Sbjct: 364 LLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCK 423

Query: 374 EQDIEGDFK-----KEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428
             ++E   K     KEA    N I+        N +ID       L+ AC +  LGL  +
Sbjct: 424 AGELEAALKVQDSMKEAGLFPNIIT-------VNIMIDRLCKAQRLDEACSIF-LGLDHK 475

Query: 429 VYT 431
           V T
Sbjct: 476 VCT 478



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 1/183 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A+++   ++   +S+LI  +G  G  D    + EE+   G+ PN  T+N LLD
Sbjct: 675 AYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLD 734

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M +    PN  TY+ ++    + R        ++EM+++G++ 
Sbjct: 735 ALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKP 794

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y T+++  A VG   EA ++FE  KSS    PDS  +++MI   S   K  +A  +
Sbjct: 795 NTITYTTMISGLARVGNVLEAKDLFERFKSSGGI-PDSACYNAMIEGLSNANKAMDAYIL 853

Query: 285 FNE 287
           F E
Sbjct: 854 FEE 856



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 45/272 (16%)

Query: 98  RAGNVEMAFGLYDRARNEKWRID--PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           R G VE A  +      E  ++D  PN  +++ LI +   AG  +  L V + MK  G+ 
Sbjct: 389 RKGKVEEALRIL-----EAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLF 443

Query: 154 PNMITYN-----------------------------------NLLDTMGRAKRPWQVKTI 178
           PN+IT N                                   +L+D +GR  +      +
Sbjct: 444 PNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYML 503

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y++M D+G +PN   Y SL+R + +    ED   +Y+EM  +G    + L N  +     
Sbjct: 504 YEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFK 563

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  ++   +FE++K ++   PD  ++S +I      G   +   +F EM E G   +  
Sbjct: 564 AGEIEKGRALFEEIK-AQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTR 622

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               +I  + K+ + +   + L  +   G+ P
Sbjct: 623 AYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQP 654



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 100/219 (45%), Gaps = 1/219 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AFG+ +  R  K+R   +A++TLI     A   D  L +  +M+ IG +  +  +  L+ 
Sbjct: 186 AFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLIC 245

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R  R     ++  EM  N  + +   Y   +  +G+    +     + E+K +G+  
Sbjct: 246 VFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVP 305

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               + +++ +       DEA E+FE++ S+++  P  + +++MI      GK +EA ++
Sbjct: 306 DDVTFTSMIGVLCKAERVDEAVELFEELDSNKSV-PCVYAYNTMIMGYGSVGKFNEAYSL 364

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
                  G  P++     ++ C G+  + ++ +R L  +
Sbjct: 365 LERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM 403



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/128 (19%), Positives = 56/128 (43%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A  ++ A   +   +N K   +   +S ++        F+     ++EM+  G+KPN 
Sbjct: 737 VKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNT 796

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITY  ++  + R     + K +++    +G  P+   Y +++     A    D   ++ E
Sbjct: 797 ITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEE 856

Query: 217 MKEKGMQL 224
            + KG ++
Sbjct: 857 TRLKGCRI 864


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 121/232 (52%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +  A  +Y++   +  + + + ++ LI  +         + +Y +M   G  P +IT
Sbjct: 452 VGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVIT 511

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+D + +A++  +  ++ +EM +NG +P+  TY SL+R     +  +D LS+++++ 
Sbjct: 512 YNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQIL 571

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            KG+++ V ++N L+      G  DEA  +F DMK  +NC P+  T+++++      G +
Sbjct: 572 YKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYI 631

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +A  ++  + E G EP++    + I+      R  + ++ L+ +   GI P
Sbjct: 632 DKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIP 683



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 119/279 (42%), Gaps = 35/279 (12%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYN 160
           ++ A  L D       + D   ++ L+     AG F+  + V++++ K  G +PN+ TYN
Sbjct: 209 LDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYN 268

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            +LD + +  R  +V  +++ M  N L P+  TY  L+    R+   +    VY E+ + 
Sbjct: 269 VMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKT 328

Query: 221 GMQLSVTLYNTLL-AMCA---------------------------------DVGYTDEAF 246
           G+ +   +YN+L+   C                                  D G  DEA 
Sbjct: 329 GLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAI 388

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
           E+++ ++    C PD+ TF ++I      G  ++A  +F E   +G + ++F  +S+I  
Sbjct: 389 ELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMING 448

Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
                R  D V+   ++ + G  P+      L++   Q 
Sbjct: 449 LCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQV 487



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 114/243 (46%), Gaps = 3/243 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G+V+ A  +Y         ID   +++L+K +  AG        ++     G++ N+ 
Sbjct: 311 RSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLR 369

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +  +    +   ++  +  D    P+  T+ +L+    +  +     +++ E
Sbjct: 370 TYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE 429

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            +  G QL V  Y++++    +VG   +A +++E M   + C+P+S  ++++I+      
Sbjct: 430 ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKM-DKDGCKPNSHIYNALISGFCQVY 488

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           + S+A  ++++M + G  P +    +LI    KA++  +       + E G TPD    G
Sbjct: 489 RTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYG 548

Query: 337 CLL 339
            L+
Sbjct: 549 SLI 551



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +G V+ A  L+D    +   I D   F TLI      G  +    ++EE +  G + ++ 
Sbjct: 381 SGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVF 440

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+++++ +    R      +Y++M  +G  PN + Y +L+  + +     D + +Y +M
Sbjct: 441 SYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM 500

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + G   +V  YNTL+  +C    Y  EA  +  +M  +    PD  T+ S+I       
Sbjct: 501 ADNGCSPTVITYNTLIDGLCKAEKY-QEASSVAREMVEN-GFTPDITTYGSLIRGLFSDK 558

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           K+ +A +++ ++L  G + ++ +   LI     A + D+ +   + + E
Sbjct: 559 KIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKE 607



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/269 (18%), Positives = 111/269 (41%), Gaps = 7/269 (2%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + PN+ TYN +L ++       +  T++  +    ++P+  TY++L+    +    +  L
Sbjct: 154 IAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHAL 213

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            +  EM   G+Q  V  YN LL  C   G  ++   +++ +      +P+  T++ M+  
Sbjct: 214 DLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDG 273

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G+  E   ++  M+    +P++     LI    ++   D   R  + + + G+  D
Sbjct: 274 LCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVID 333

Query: 332 DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390
                 L+    Q  + +E  K  +    +  +      ++++    +     EA EL++
Sbjct: 334 AAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGL-FDSGMVDEAIELWD 392

Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENACK 419
            + KDV      C+ D      L+   C+
Sbjct: 393 LLEKDVA-----CIPDTVTFGTLIHGLCQ 416



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/270 (19%), Positives = 115/270 (42%), Gaps = 8/270 (2%)

Query: 82  PKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 141
           P  P    L  +   +   ++     L  R R+   R   +A   ++  +  A   D  L
Sbjct: 45  PPQPLLFHLLRRLATSSPSHLPCLLNLLPRLRHRP-RFSESAALVVLSAFSRAIMPDAAL 103

Query: 142 NVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG----LSPNWNTYAS 196
           + +  + +I G  P + ++N LLD   RA+R       +  ++       ++PN  TY  
Sbjct: 104 DAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNI 163

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           +LR+       +  ++++  ++ + +      Y+TL+   A     D A ++ ++M  S 
Sbjct: 164 VLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRS- 222

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDD 315
             QPD   +++++  C   G+  +   ++++++ + G  PNL     ++    K  R  +
Sbjct: 223 GVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKE 282

Query: 316 VVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           V     R+    + PD    G L++ + ++
Sbjct: 283 VGEVWERMVANNLQPDVITYGILIHGLCRS 312



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMITYN 160
           ++ A  ++ +   +  ++D    + LI    +AG  D  L+V+ +MK      PN++TYN
Sbjct: 560 IDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYN 619

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+D +       +  T++  +T++GL P+  +Y + ++         + + +  E+  +
Sbjct: 620 TLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSR 679

Query: 221 GMQLSVTLYNTLL 233
           G+  +V  +N L+
Sbjct: 680 GIIPTVITWNILV 692


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 121/232 (52%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +  A  +Y++   +  + + + ++ LI  +         + +Y +M   G  P +IT
Sbjct: 452 VGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVIT 511

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+D + +A++  +  ++ +EM +NG +P+  TY SL+R     +  +D LS+++++ 
Sbjct: 512 YNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQIL 571

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            KG+++ V ++N L+      G  DEA  +F DMK  +NC P+  T+++++      G +
Sbjct: 572 YKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYI 631

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +A  ++  + E G EP++    + I+      R  + ++ L+ +   GI P
Sbjct: 632 DKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIP 683



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 120/279 (43%), Gaps = 35/279 (12%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYN 160
           ++ A  L D     + + D   ++ L+     AG F+  + V++++ K  G +PN+ TYN
Sbjct: 209 LDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYN 268

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            +LD + +  R  +V  +++ M  N L P+  TY  L+    R+   +    VY E+ + 
Sbjct: 269 VMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKT 328

Query: 221 GMQLSVTLYNTLL-AMCA---------------------------------DVGYTDEAF 246
           G+ +   +YN+L+   C                                  D G  DEA 
Sbjct: 329 GLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAI 388

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
           E+++ ++    C PD+ TF ++I      G  ++A  +F E   +G + ++F  +S+I  
Sbjct: 389 ELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMING 448

Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
                R  D V+   ++ + G  P+      L++   Q 
Sbjct: 449 LCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQV 487



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 114/243 (46%), Gaps = 3/243 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G+V+ A  +Y         ID   +++L+K +  AG        ++     G++ N+ 
Sbjct: 311 RSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLR 369

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +  +    +   ++  +  D    P+  T+ +L+    +  +     +++ E
Sbjct: 370 TYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE 429

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            +  G QL V  Y++++    +VG   +A +++E M   + C+P+S  ++++I+      
Sbjct: 430 ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKM-DKDGCKPNSHIYNALISGFCQVY 488

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           + S+A  ++++M + G  P +    +LI    KA++  +       + E G TPD    G
Sbjct: 489 RTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYG 548

Query: 337 CLL 339
            L+
Sbjct: 549 SLI 551



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +G V+ A  L+D    +   I D   F TLI      G  +    ++EE +  G + ++ 
Sbjct: 381 SGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVF 440

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+++++ +    R      +Y++M  +G  PN + Y +L+  + +     D + +Y +M
Sbjct: 441 SYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM 500

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + G   +V  YNTL+  +C    Y  EA  +  +M  +    PD  T+ S+I       
Sbjct: 501 ADNGCSPTVITYNTLIDGLCKAEKY-QEASSVAREMVEN-GFTPDITTYGSLIRGLFSDK 558

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           K+ +A +++ ++L  G + ++ +   LI     A + D+ +   + + E
Sbjct: 559 KIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKE 607



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/269 (18%), Positives = 110/269 (40%), Gaps = 7/269 (2%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + PN+ TYN +L ++       +  T++  +    ++P+  TY++L+    +    +  L
Sbjct: 154 IAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHAL 213

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            +  EM    +Q  V  YN LL  C   G  ++   +++ +      +P+  T++ M+  
Sbjct: 214 DLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDG 273

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G+  E   ++  M+    +P++     LI    ++   D   R  + + + G+  D
Sbjct: 274 LCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVID 333

Query: 332 DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390
                 L+    Q  + +E  K  +    +  +      ++++    +     EA EL++
Sbjct: 334 AAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGL-FDSGMVDEAIELWD 392

Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENACK 419
            + KDV      C+ D      L+   C+
Sbjct: 393 LLEKDVA-----CIPDTVTFGTLIHGLCQ 416



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/234 (19%), Positives = 104/234 (44%), Gaps = 7/234 (2%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVK 176
           R   +A   ++  +  A   D  L+ +  + +I G  P + ++N LLD   RA+R     
Sbjct: 80  RFSESAALVVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDAD 139

Query: 177 TIYKEMTDNG----LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
             +  ++       ++PN  TY  +LR+       +  ++++  ++ + +      Y+TL
Sbjct: 140 AFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTL 199

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-EA 291
           +   A     D A ++ ++M  S   QPD   +++++  C   G+  +   ++++++ + 
Sbjct: 200 MCGLAKQDRLDHALDLLDEMPRSR-VQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDP 258

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           G  PNL     ++    K  R  +V     R+    + PD    G L++ + ++
Sbjct: 259 GARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRS 312



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMITYN 160
           ++ A  ++ +   +  ++D    + LI    +AG  D  L+V+ +MK      PN++TYN
Sbjct: 560 IDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYN 619

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+D +       +  T++  +T++GL P+  +Y + ++         + + +  E+  +
Sbjct: 620 TLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSR 679

Query: 221 GMQLSVTLYNTLL 233
           G+  +V  +N L+
Sbjct: 680 GIIPTVITWNILV 692


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 190/421 (45%), Gaps = 43/421 (10%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+++ A G++ + +      +   +S L+ LYG  G +D   +++ EMK    +PN  
Sbjct: 92  QSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAA 151

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++  G      +V T++ +M +  + PN  TY  L+ A G+    ED   +   M
Sbjct: 152 TYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHM 211

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+  S   Y  ++         +EA   F  M      +P   T++S+I + +  G 
Sbjct: 212 NEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEV-GSKPTVETYNSLIQMFAKGGL 270

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             E+EA+  +M ++G   N      +I+ + +  + ++ ++A   + +    PD++    
Sbjct: 271 YKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEA 330

Query: 338 LLNV-----MTQTPKEELGKLVECVEKSNSKLGYVVKL--------------LLEE---- 374
           +L+V     + +  +E+ G+ ++ +    S + Y + L              LL+E    
Sbjct: 331 VLSVYCFAGLVEESEEQFGE-IKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTN 389

Query: 375 ----------QDIEGDFKKEAT-ELFNSISKDVKKAYC-------NCLIDLCVNLNLLEN 416
                     Q I GD+  ++  ++   + + +K   C       N L++    L   E 
Sbjct: 390 RVSNIHQVIGQMIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKER 449

Query: 417 ACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPP 476
           A ++L       ++ ++  ++   WS+ +  +  GAA TA+ +W+N++ +   SG++ P 
Sbjct: 450 ATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGAACTAISVWLNNMHEMFISGDDLPQ 509

Query: 477 L 477
           L
Sbjct: 510 L 510



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 6/229 (2%)

Query: 103 EMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           EM F    R  NE   + D   +S L++ +G     +    + +EM++ G  P++ +YN 
Sbjct: 30  EMVF----RTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNV 85

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LL+   ++    +   ++++M   G  PN  TY+ LL  YGR    +D   ++ EMK   
Sbjct: 86  LLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSN 145

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            + +   YN L+ +  + GY  E   +F DM   EN +P+  T+  +I  C   G   +A
Sbjct: 146 TEPNAATYNILINVFGEGGYFKEVVTLFHDM-VEENVEPNMETYEGLIFACGKGGLHEDA 204

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + +   M E G  P+    T +I+ YG+A   ++ + A N + E+G  P
Sbjct: 205 KKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKP 253



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 1/221 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R+E  + D   ++TL+      G  D    V+  M   G+ P++ TY+ L++T G+  R 
Sbjct: 2   RHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRL 61

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +V  + KEM   G  P+  +Y  LL A+ ++   ++ + V+R+M+  G   +   Y+ L
Sbjct: 62  EKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL 121

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           L +    G  D+  ++F +MK S N +P++ T++ +I +    G   E   +F++M+E  
Sbjct: 122 LNLYGRHGRYDDVRDLFLEMKVS-NTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEEN 180

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            EPN+     LI   GK    +D  + L  + E G+ P  +
Sbjct: 181 VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSK 221



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 106/220 (48%), Gaps = 2/220 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++ L++ +  +G+    + V+ +M+  G  PN  TY+ LL+  GR  R   V+ ++
Sbjct: 79  DITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLF 138

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM  +   PN  TY  L+  +G   Y ++ ++++ +M E+ ++ ++  Y  L+  C   
Sbjct: 139 LEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKG 198

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A +I   M + +   P S  ++ +I          EA   FN M E G +P +  
Sbjct: 199 GLHEDAKKILLHM-NEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVET 257

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCL 338
             SLIQ + K     +    L ++ + G+  + D F G +
Sbjct: 258 YNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVI 297



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 1/185 (0%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           M+  G++ +++TYN LL    R     + + +++ M + G+ P+  TY+ L+  +G+   
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 60

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            E    + +EM+  G    +T YN LL   A  G   EA  +F  M+ +  C P++ T+S
Sbjct: 61  LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGA-GCVPNAATYS 119

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            ++ +    G+  +   +F EM  +  EPN      LI  +G+     +VV   + + E 
Sbjct: 120 ILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEE 179

Query: 327 GITPD 331
            + P+
Sbjct: 180 NVEPN 184



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G+  +  TY +LL A  R   G++   V+R M E G+   +T Y+ L+     +  
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 60

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++  E+ ++M+S  +  PD  +++ ++   +  G + EA  +F +M  AG  PN    +
Sbjct: 61  LEKVSELLKEMESGGSF-PDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYS 119

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            L+  YG+  R DDV      +      P+      L+NV  +
Sbjct: 120 ILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGE 162



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           E  Q D  T++++++ C+ RG   EAE +F  M E G  P++   + L++ +GK  R + 
Sbjct: 4   EGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEK 63

Query: 316 VVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELG 351
           V   L  +   G  PD      LL    Q+   KE +G
Sbjct: 64  VSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMG 101


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 25/397 (6%)

Query: 107 GLYDRARN-----EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G YD  R+     +    DP+A  ++ LI+++G  G F   + ++ +M    V+PNM TY
Sbjct: 359 GRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTY 418

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+   G+       K I   M + G+ P+   Y  ++ A+G+A   E+ L ++  M E
Sbjct: 419 EGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNE 478

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +V  YN+L+   A  G   EA  I   M  S   + D  +F+ +I      G+  
Sbjct: 479 VGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNES-GLKRDVHSFNGVIEAFRQGGQYE 537

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA   + EM +A  EPN   L +++  Y  A   D+       +   GI P    C C++
Sbjct: 538 EAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPS-VMCYCMM 596

Query: 340 NVM---TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT--------EL 388
             +        +    +   +    S +  V+      Q I+GDF  E+         + 
Sbjct: 597 LALYAKNDRLNDAYNLIDAMITMRVSDIHQVIG-----QMIKGDFDDESNWQIVEYVFDK 651

Query: 389 FNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL 448
            NS    +   + N L++    +   E A ++L       ++ ++  +S   WS+ +  +
Sbjct: 652 LNSEGCGLGMRFYNALLEALWCMFQRERAARVLNEASKRGLFPELFRKSKLVWSVDVHRM 711

Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHG 485
           S G ALTAL +W+N++ +   +G++ P +  +    G
Sbjct: 712 SEGGALTALSVWLNNVHEMSMTGDDLPEVATVVVVRG 748



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 121/237 (51%), Gaps = 6/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKP 154
           R G    +  L +  + E  R+ P+   ++T+I      G +++G L ++ EM+  G++P
Sbjct: 181 RNGQFHASLELLNGMKQE--RVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP 238

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ITYN LL          + + +++ M ++G+ P+ NTY+ L++ +G+    E    + 
Sbjct: 239 DVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELL 298

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           REM+  G    +T YN LL   A++G   EA  +F  M+++  C  ++ T+S ++ +   
Sbjct: 299 REMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAA-GCVANAATYSVLLNLYGK 357

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+  +   +F EM  +  +P+      LIQ +G+     +VV   + + E  + P+
Sbjct: 358 HGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPN 414



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 119/240 (49%), Gaps = 5/240 (2%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           K ++  N F+ + K +   G++   L +++ M + I  KPN   +  ++  +GR     +
Sbjct: 93  KNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDK 152

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            + ++ EM  NG+     +Y +++ AYGR      +L +   MK++ +  S+  YNT++ 
Sbjct: 153 CREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVIN 212

Query: 235 MCADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            CA  G   E    +F +M+  E  QPD  T+++++  C+ RG   EAE +F  M E+G 
Sbjct: 213 ACARGGLDWEGLLGLFAEMR-HEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGI 271

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ--TPKEELG 351
            P++   + L+Q +GK  R + V   L  +   G  PD      LL    +  + KE +G
Sbjct: 272 VPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMG 331



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 141/319 (44%), Gaps = 6/319 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++ L++ Y   G+    + V+ +M+A G   N  TY+ LL+  G+  R   V+ ++
Sbjct: 309 DITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLF 368

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM  +   P+  TY  L++ +G   Y ++ ++++ +M E+ ++ ++  Y  L+  C   
Sbjct: 369 LEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKG 428

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A +I   M + +   P S  ++ +I          EA  MFN M E G  P +  
Sbjct: 429 GLYEDAKKILLHM-NEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVET 487

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPKEELGKLVECVE 358
             SLI  + +     +    L+R+ E G+  D   F G +         EE  K    +E
Sbjct: 488 YNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEME 547

Query: 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI--SKDVKKAYCNC-LIDLCVNLNLLE 415
           K+N +   +    +           E  E F  I  S  +    C C ++ L    + L 
Sbjct: 548 KANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLN 607

Query: 416 NACKLLELGLTLEVYTDIQ 434
           +A  L++  +T+ V +DI 
Sbjct: 608 DAYNLIDAMITMRV-SDIH 625



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 146/328 (44%), Gaps = 7/328 (2%)

Query: 100 GNVEMAFGLYDRARNEKW-RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G+ + +  L+   + + W + + +  + +I L G  G  D C  V++EM + GV   + +
Sbjct: 112 GDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYS 171

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREM 217
           Y  +++  GR  +      +   M    +SP+  TY +++ A  R     E  L ++ EM
Sbjct: 172 YTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEM 231

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+Q  V  YNTLL  CA  G  DEA  +F  M  S    PD  T+S ++       +
Sbjct: 232 RHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNES-GIVPDINTYSYLVQTFGKLNR 290

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +   +  EM   G  P++     L++ Y +     + +    ++   G   +      
Sbjct: 291 LEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSV 350

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           LLN+  +  + +++  L   ++ SN+        +L +   EG + KE   LF+ ++++ 
Sbjct: 351 LLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEEN 410

Query: 397 KKAYCNC---LIDLCVNLNLLENACKLL 421
            +        LI  C    L E+A K+L
Sbjct: 411 VEPNMQTYEGLIFACGKGGLYEDAKKIL 438



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 104/244 (42%), Gaps = 13/244 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  + A  +  R      + D ++F+ +I+ +   G ++  +  Y EM+    +PN +
Sbjct: 497 RGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNEL 556

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T   +L     A    + +  ++E+  +G+ P+   Y  +L  Y +     D L+    +
Sbjct: 557 TLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAK----NDRLNDAYNL 612

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEA-FEIFE---DMKSSENCQPDSWTFSSMITICS 273
            +  + + V+  + ++       + DE+ ++I E   D  +SE C      +++++    
Sbjct: 613 IDAMITMRVSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALW 672

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA-----LNRLPELGI 328
           C  +   A  + NE  + G  P LF  + L+      + ++          LN + E+ +
Sbjct: 673 CMFQRERAARVLNEASKRGLFPELFRKSKLVWSVDVHRMSEGGALTALSVWLNNVHEMSM 732

Query: 329 TPDD 332
           T DD
Sbjct: 733 TGDD 736


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/448 (22%), Positives = 205/448 (45%), Gaps = 26/448 (5%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L ++ ++   ++D   ++TL+ +Y   G +D    V E+M+ +G++ + +TYN+L++
Sbjct: 183 ALKLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLIN 242

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G+  R   V  + ++M   G++P+  TY++L+  Y +A    D  +VY + KE G++ 
Sbjct: 243 GYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKA 302

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            V L+++ +   A  G  + A  + ++M      +P+  T++++I     + K+   E  
Sbjct: 303 DVVLFSSFIDTLAKNGLVECALSLLDEMIKM-GIKPNVVTYNTIIDAFG-KSKILTEEDP 360

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKA------QRTDD---VVRALNRLPELGITPDDRFC 335
            N  +   +   +   T+ +   G++      +R+ +   ++    ++ + G+ P+    
Sbjct: 361 GNMGIVGVYGGQIVRATNPVTRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTF 420

Query: 336 GCLLNVMTQTPK-EELGKLVECVEK-SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
             +LN  ++    E+   L+E +    NS  G    LL+   +       +A  LFN + 
Sbjct: 421 SAILNACSRCNNFEDAALLLEQLRLFDNSVYGVAYGLLMGHLEAW----SQARSLFNQLG 476

Query: 394 K---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSL 450
           +       A+ N L D+  +    + A +++  G+   V+ +        + L L  +S 
Sbjct: 477 RMDSPTSSAFYNALTDVLWHFGQRQGAQQVVLEGVNRRVWENTWG----DFCLDLHLMSC 532

Query: 451 GAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAP 508
           GAA   +H W+ ++   +  G   P  L I TG GKH        L  V E+ L  + AP
Sbjct: 533 GAAQAMVHAWLLNVRSIVFEGRAMPEFLSILTGWGKHSKIAGSSTLRRVIEALLLSIGAP 592

Query: 509 FHDSPDKVGWFLTTEAAAKSWLESRSSL 536
           F      +G F++  A   +WL    ++
Sbjct: 593 FQVERFNIGRFVSPSALVAAWLRESGTV 620



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 9/259 (3%)

Query: 100 GNVEMAF--GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G V++ F  G + +   +    D   F++L+     AG+ +    V++EM  +G   ++ 
Sbjct: 71  GGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIY 130

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN  +D + +         +  +M  N + PN  TY++L+  + +    ++ L +  +M
Sbjct: 131 TYNTFVDAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKM 190

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+QL    YNTLLA+    G  DE   + EDM++    + D+ T++S+I     +G+
Sbjct: 191 KSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENL-GIEKDTVTYNSLINGYGKQGR 249

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +     +  +M   G  P++   ++LI  Y KA    D         E G+  D      
Sbjct: 250 LDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSS 309

Query: 338 LLNVMTQTPKEELGKLVEC 356
            ++ + +        LVEC
Sbjct: 310 FIDTLAKN------GLVEC 322



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 7/235 (2%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           G+ DR  N  +     A S LI  Y  +G     + V E MK  G++P  ++YN ++D  
Sbjct: 14  GIADRYGNTVF-----AHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDAC 68

Query: 167 GRAKRPWQVKTIY-KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
           G+     +    Y ++M  +GL P+  T+ SLL A  RA + ED  +V+ EM   G    
Sbjct: 69  GKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRD 128

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           +  YNT +      G  + A ++  DM+++ N +P+  T+S+++   S   K  EA  + 
Sbjct: 129 IYTYNTFVDAICKCGNMELATQVVLDMEAN-NIKPNVVTYSTLMDGFSKLEKYDEALKLR 187

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            +M   G + +     +L+  Y K  + D++      +  LGI  D      L+N
Sbjct: 188 EKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLIN 242



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 104/208 (50%), Gaps = 9/208 (4%)

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED---TLS 212
           +  ++ L+    R+    +   + + M   GL P   +Y +++ A G+   G D   TL 
Sbjct: 23  VFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKG--GVDLRFTLG 80

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TI 271
            +R+M + G+      +N+LLA C+  G+ ++A  +F++M    + + D +T+++ +  I
Sbjct: 81  YFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGR-DIYTYNTFVDAI 139

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           C C G +  A  +  +M     +PN+   ++L+  + K ++ D+ ++   ++  LGI  D
Sbjct: 140 CKC-GNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLD 198

Query: 332 DRFCGCLLNVMTQTPK-EELGKLVECVE 358
                 LL +  +T K +E+  + E +E
Sbjct: 199 RVCYNTLLAIYVKTGKYDEIATVCEDME 226



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 37/198 (18%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++M   L    R +        +STLI +Y  AG      NVY + K  G+K +++
Sbjct: 246 KQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVV 305

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR------------ 205
            +++ +DT+ +        ++  EM   G+ PN  TY +++ A+G+++            
Sbjct: 306 LFSSFIDTLAKNGLVECALSLLDEMIKMGIKPNVVTYNTIIDAFGKSKILTEEDPGNMGI 365

Query: 206 ---YGEDTLSVYREMKEKG-------MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
              YG   +     +   G       M+ S  L+  L              E+F+ M   
Sbjct: 366 VGVYGGQIVRATNPVTRGGRSATDVRMRRSQELFFIL--------------ELFQKM-VQ 410

Query: 256 ENCQPDSWTFSSMITICS 273
           +  +P+  TFS+++  CS
Sbjct: 411 QGVRPNVVTFSAILNACS 428



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 80/171 (46%), Gaps = 12/171 (7%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG    AF +Y   +    + D   FS+ I      G  +  L++ +EM  +G+KPN+
Sbjct: 280 SKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMIKMGIKPNV 339

Query: 157 ITYNNLLDTMGRAKRPWQ-------VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           +TYN ++D  G++K   +       +  +Y        +P      S      R R  ++
Sbjct: 340 VTYNTIIDAFGKSKILTEEDPGNMGIVGVYGGQIVRATNPVTRGGRSATDV--RMRRSQE 397

Query: 210 ---TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
               L ++++M ++G++ +V  ++ +L  C+     ++A  + E ++  +N
Sbjct: 398 LFFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFEDAALLLEQLRLFDN 448


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 4/241 (1%)

Query: 91  KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150
           K KS  T +G   +A  L D       R D   ++TLI       N    + V+  M++ 
Sbjct: 309 KVKSCATVSG---LAIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESN 365

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
             +P++ TYN ++   GR     + + +++++  NG SP+  TY SLL A+ +    E  
Sbjct: 366 RCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKV 425

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             +  EM + G       YNT++ M    G  DEA  ++ DMKSS    PD+ T++ +I 
Sbjct: 426 RDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGR-NPDAVTYTVLID 484

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +     K+ EA  + +EML+AG +P L   ++LI  Y K  R  +     NR+ E GI  
Sbjct: 485 LLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKA 544

Query: 331 D 331
           D
Sbjct: 545 D 545



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 184/421 (43%), Gaps = 8/421 (1%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++ D   F++++KLY +   F     +Y+ ++  G+ P+  TYN L+    R  RP +  
Sbjct: 960  FKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGL 1019

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++  +M   GL P  +TY S++ A+ + +  +    ++ E++  G +L  + Y+ ++ M 
Sbjct: 1020 SLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMY 1079

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
               G   +A  + E MK +   +P++ T   ++      G+  EA+ +   +   G   +
Sbjct: 1080 RTSGDHQKAENLLEIMKEA-GIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLD 1138

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
                +S+I  Y K       +  L  + E  I PD R   C +   + + +  +   L+ 
Sbjct: 1139 TLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLN 1198

Query: 356  CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLE 415
             ++     L   ++LL E+ +       +       +  +    + N L+DL     L  
Sbjct: 1199 ALQAVGFDLP--IRLLGEKSESLVSEVDQCLGRLEHVEDNAAFNFVNALVDLLWAFELRA 1256

Query: 416  NACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA-LESGEE 473
             A  + +L +   +Y  DI   +   W    + LS G+AL  L +W++ +  A L+   E
Sbjct: 1257 TASWVFQLAIKRSIYRHDIFRVAQKDWGADFRKLSAGSALVGLTLWLDHMQDASLQGYPE 1316

Query: 474  FPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESR 533
             P  + + TG    +Y+   L S  ++ L E+ +PF     + G  +    + + WL+  
Sbjct: 1317 SPKSVVLITGTA--EYNMVSLDSTLKAFLWEMGSPFLPCKTRHGVLVAKAHSLRMWLKDS 1374

Query: 534  S 534
            S
Sbjct: 1375 S 1375



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 127/269 (47%), Gaps = 4/269 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R  N++ A G++    + + + D   ++ +I +YG  G      +++E++K+ G  P+ 
Sbjct: 347 SRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDA 406

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN+LL    +     +V+ I +EM   G   +  TY +++  YG+    ++ L +YR+
Sbjct: 407 VTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRD 466

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G       Y  L+ +       +EA ++  +M  +   +P   T+S++I   +  G
Sbjct: 467 MKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDA-GVKPTLHTYSALICAYAKVG 525

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  EAE  FN M E+G + +    + ++  + +             + E G TPD     
Sbjct: 526 RRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYE 585

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLG 365
            +L  +    +E +G ++E V +   +LG
Sbjct: 586 VMLPALV---RENMGDVIERVVQDTKELG 611



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 50/219 (22%)

Query: 108  LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
            L++  R+  +++D + +  ++K+Y T+G+     N+ E MK  G++PN  T + L+ + G
Sbjct: 1056 LFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYG 1115

Query: 168  RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQL 224
            ++ +P +   I K +   G   +   Y+S++ AY   G A+ G + L+   EMKE  +  
Sbjct: 1116 KSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAGIEKLT---EMKEAAI-- 1170

Query: 225  SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
                                              +PD   ++  I   S  G+V++A  +
Sbjct: 1171 ----------------------------------EPDHRIWTCFIRAASLSGEVNDANNL 1196

Query: 285  FNEMLEAGFEPNLFVL----TSLI----QCYGKAQRTDD 315
             N +   GF+  + +L     SL+    QC G+ +  +D
Sbjct: 1197 LNALQAVGFDLPIRLLGEKSESLVSEVDQCLGRLEHVED 1235



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 95/213 (44%), Gaps = 1/213 (0%)

Query: 118  RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
            ++D   ++ LI  Y  +G ++    ++  M   G  P + + N LL  +    R  ++  
Sbjct: 821  KMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYV 880

Query: 178  IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
            + +E+ D  L  + ++   +L A+ +A    +   VY  MK  G   ++ LY  ++ +  
Sbjct: 881  VIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLC 940

Query: 238  DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
                  +   +  +M  +   +PD   F+S++ + S   +      ++  + +AG  P+ 
Sbjct: 941  RFKRVRDVRVMLSEMGEA-GFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDE 999

Query: 298  FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                +LI  Y +  R ++ +  ++++  LG+ P
Sbjct: 1000 ETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEP 1032



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 39/208 (18%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK- 220
           +L  +G+A +      I+ +  ++ ++     Y +++  Y R    E    ++  M+E+ 
Sbjct: 236 ILSVLGKANQEGIAVEIFAK-AESVIADTVQVYNAMMGVYARNGNFEKVNEMFNLMRERG 294

Query: 221 ------------------------------------GMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++  +  YNTL++ C+      E
Sbjct: 295 CEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKFGLRPDIITYNTLISACSRESNLKE 354

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+S+  CQPD WT+++MI++    G   +AE +F ++   GF P+     SL+
Sbjct: 355 AIGVFSHMESNR-CQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLL 413

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDD 332
             + K   T+ V      + ++G   D+
Sbjct: 414 YAFSKEGNTEKVRDISEEMVKMGFGKDE 441



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 8/189 (4%)

Query: 92  EKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 145
           E +Y+T      + G  + A  LY   ++     D   ++ LI L G A   +    V  
Sbjct: 441 EMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMS 500

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           EM   GVKP + TY+ L+    +  R  + +  +  M ++G+  +   Y+ +L  + R  
Sbjct: 501 EMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFN 560

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             +   ++Y+EM E G      LY  +L         D    + +D K   +  P     
Sbjct: 561 EIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTKELGSMNPHD--I 618

Query: 266 SSMITICSC 274
           SS++    C
Sbjct: 619 SSVLVKGGC 627



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 46/275 (16%), Positives = 106/275 (38%), Gaps = 39/275 (14%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI--YKE 181
           + +LI     +  FD    ++ +M+  GV+P+   Y +++    R   P   + +  + E
Sbjct: 720 YESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQHLLYHAE 779

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
             D  L         ++  YG+ +  +   S+   ++++  ++   ++N L+   A  G 
Sbjct: 780 KNDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGC 839

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS---------------------- 279
            + A  IF  M   E   P   + + ++      G++S                      
Sbjct: 840 YERARAIFNTMM-REGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSIL 898

Query: 280 -------------EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
                        E + ++N M  AG+ P + +   +I    + +R  DV   L+ + E 
Sbjct: 899 LMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEA 958

Query: 327 GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS 360
           G  PD +    +L + +   + + +G + + ++ +
Sbjct: 959 GFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDA 993


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 9/244 (3%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N +M F +Y      K  ++  +F+ ++      G  +   +V E+MK  GV PN+ITYN
Sbjct: 136 NGDMEF-VYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYN 194

Query: 161 NLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            L+D    MGR  + ++   I KEM   G+ PN  TY  L+  + +       + V+ EM
Sbjct: 195 TLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEM 254

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           + +G++ +V  YN L+  +C+D G  DEA  + + M SS+  +P+  T + +I    C+ 
Sbjct: 255 QRQGLRPNVVTYNILINGLCSD-GKVDEAVALRDQMVSSD-LEPNVVTHNVLIN-GFCKN 311

Query: 277 K-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           K V+EA  +FN+M + G +PN    T+LI  Y K  R +D     N + + GI P+    
Sbjct: 312 KTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTY 371

Query: 336 GCLL 339
            CL+
Sbjct: 372 NCLI 375



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 107/215 (49%), Gaps = 5/215 (2%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN   ++ LI  +    N  G + V+ EM+  G++PN++TYN L++ +    +  +  
Sbjct: 224 ICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAV 283

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 235
            +  +M  + L PN  T+  L+  + + +   + ++++ +M+++G+  +   Y TL+ A 
Sbjct: 284 ALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAY 343

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           C D G  ++AF ++ +M       P+  T++ +I     +G V  A ++ NEM+      
Sbjct: 344 CKD-GRMEDAFALY-NMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSA 401

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           ++     LI    K   +   V+ L+ + E G+ P
Sbjct: 402 DVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNP 436



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 100/207 (48%), Gaps = 1/207 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           NV  A  ++   + +  R +   ++ LI    + G  D  + + ++M +  ++PN++T+N
Sbjct: 243 NVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHN 302

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L++   + K   +   ++ +M   G+ PN  TY +L+ AY +    ED  ++Y  M ++
Sbjct: 303 VLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDR 362

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+   V+ YN L+A     G    A  +  +M  S+    D  T++ +I     +G+  +
Sbjct: 363 GIFPEVSTYNCLIAGLCRKGDVKAARSLMNEM-VSKKLSADVVTYNILIDSLCKKGESRK 421

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           A  + +EM E G  P+     +L+  Y
Sbjct: 422 AVKLLDEMFEKGLNPSHVTYNTLMDGY 448



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 36/199 (18%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E AF LY+   +     + + ++ LI      G+     ++  EM +  +  +++
Sbjct: 345 KDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVV 404

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D++ +     +   +  EM + GL+P+  TY +L+  Y R       L V   M
Sbjct: 405 TYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRM 464

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + KG Q +V  +N L+      G+                                 +G+
Sbjct: 465 ERKGKQANVVTHNVLIK-----GFC-------------------------------LKGR 488

Query: 278 VSEAEAMFNEMLEAGFEPN 296
           + +A  + NEMLE G  PN
Sbjct: 489 LEDANGLLNEMLERGLVPN 507



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 6/157 (3%)

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +K   D G   +  +   LL    +     D   VYREM ++ ++L+V  +N ++     
Sbjct: 108 FKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCK 167

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR----GKVSEAEAMFNEMLEAGFE 294
           VG  + A ++ EDMK      P+  T++++I    C+    GK+ +A+A+  EM+  G  
Sbjct: 168 VGKLNRAGDVIEDMKVW-GVSPNVITYNTLID-GYCKMGRIGKMYKADAILKEMVAKGIC 225

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           PN      LI  + K +     +R    +   G+ P+
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPN 262



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 57/135 (42%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+V+ A  L +   ++K   D   ++ LI      G     + + +EM   G+ P+ +
Sbjct: 380 RKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHV 439

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D   R         +   M   G   N  T+  L++ +      ED   +  EM
Sbjct: 440 TYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEM 499

Query: 218 KEKGMQLSVTLYNTL 232
            E+G+  + T Y  +
Sbjct: 500 LERGLVPNRTTYEII 514


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 112/231 (48%), Gaps = 1/231 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E   GL+   R+E  + D   ++TL+      G  D    V+  M   GV P++ TY  L
Sbjct: 231 EGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYL 290

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +DT G+  R  +V  + KEM   G  P  ++Y  LL AY R    ED   V+R M+E G 
Sbjct: 291 VDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGC 350

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
             +   Y+ LL +    G  DE  E+F +MK S N +PD+ T++++I +    G   E  
Sbjct: 351 VPNAETYSILLGLYGKHGRYDEVRELFLEMKVS-NTEPDAATYNTLIDVFGEGGYFKEVV 409

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            +F++M E   EPN+     LI   GK    DD  + L  + E G+ P  +
Sbjct: 410 TLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSK 460



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 164/377 (43%), Gaps = 18/377 (4%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI ++G  G F   + ++ +M    V+PNM TY  L+   G+       K I 
Sbjct: 388 DAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKIL 447

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M++ G+ P+   Y  ++ AYG+A   E+ L     M E G + ++  YNTL+ M A  
Sbjct: 448 LHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARG 507

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   E   I   M        +  +F+ +I      G+  EA   + EM ++   P+   
Sbjct: 508 GLYKETEAILLKM-GDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERT 566

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL-LNVMTQTPK--EELGKLVEC 356
           L +++  Y  A   D+ V     +   GI P+   C C+ L V  ++ +  E    L E 
Sbjct: 567 LEAVLSVYCIAGLVDESVEQFQEIKASGILPN-VMCYCMMLAVYAKSDRWNEAYELLDEM 625

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEAT--------ELFNSISKDVKKAYCNCLIDLC 408
           +    S +  V+      Q I+GDF  ++         +  NS    +   + N L++  
Sbjct: 626 LTNRASNIHQVIG-----QMIKGDFDDDSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEAL 680

Query: 409 VNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKAL 468
             L   E A ++L        + ++  +S   WS+ +  +  G+A TA+ +W+N++ +  
Sbjct: 681 WWLGQKERAVRVLGEATKRGHFPELFRKSKLVWSVDIHRMWEGSAYTAISVWLNNMYEIF 740

Query: 469 ESGEEFPPLLGINTGHG 485
            + ++ P L  +    G
Sbjct: 741 MNRQDIPQLASVIVVRG 757



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           K ++  N F+ + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 102 KNKLSLNDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEK 161

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
              I++EM  +G+S +  +Y +L+ +YGR    E +L +   MK++ +  S+  YNT++ 
Sbjct: 162 CSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVIN 221

Query: 235 MCADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            CA  G   E    +F +M+  E  QPD  T+++++  CS RG   EAE +F  M E G 
Sbjct: 222 SCARGGLDWEGLLGLFAEMR-HEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGV 280

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            P++   T L+  +GK  R D V   L  +   G  P+
Sbjct: 281 VPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPE 318



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 2/223 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKE 181
           +++ LI  YG  G ++  L + E MK   V P+++TYN ++++  R    W+ +  ++ E
Sbjct: 180 SYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAE 239

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G+ P+  TY +LL A      G++   V+R M E G+   +T Y  L+     +  
Sbjct: 240 MRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNR 299

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D+  E+ ++M S+ N  P+  +++ ++   +  G + +A  +F  M EAG  PN    +
Sbjct: 300 LDKVSELLKEMASTGNV-PEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYS 358

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            L+  YGK  R D+V      +      PD      L++V  +
Sbjct: 359 ILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGE 401



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 91/190 (47%), Gaps = 8/190 (4%)

Query: 107 GLYDRAR------NEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A+      +EK  I    A++ +I+ YG A  ++  L     M  +G KP + TY
Sbjct: 438 GLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETY 497

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+    R     + + I  +M D G++   +++  ++  + +    E+ +  Y EM++
Sbjct: 498 NTLIYMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEK 557

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             +         +L++    G  DE+ E F+++K+S    P+   +  M+ + +   + +
Sbjct: 558 SRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKAS-GILPNVMCYCMMLAVYAKSDRWN 616

Query: 280 EAEAMFNEML 289
           EA  + +EML
Sbjct: 617 EAYELLDEML 626



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 1/153 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  E A   Y      +   D      ++ +Y  AG  D  +  ++E+KA G+ PN++
Sbjct: 541 QGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVM 600

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDTLSVYRE 216
            Y  +L    ++ R  +   +  EM  N  S        +++  +      +    V+ +
Sbjct: 601 CYCMMLAVYAKSDRWNEAYELLDEMLTNRASNIHQVIGQMIKGDFDDDSNWQMVEYVFDK 660

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           +  +G  L +  YNTLL     +G  + A  + 
Sbjct: 661 LNSEGCGLGMRFYNTLLEALWWLGQKERAVRVL 693


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 174/353 (49%), Gaps = 19/353 (5%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G++E +  L+ + R      D   +++LI  YG  G+ +   +++ EMK +G  P
Sbjct: 239 YLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVP 298

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ITYN L++   + ++  +    + EM +NGL PN  TY++L+ A+ +    +  + + 
Sbjct: 299 DIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLL 358

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M+  G+  +   Y +L+      G   EA+++  DM  +   + +  T+++++     
Sbjct: 359 XDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA-GVKLNIVTYTALLDGLCK 417

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G++ EAE +F  ML+ G  PN  V T+L+  Y KA+R +D ++ L ++ E  I PD   
Sbjct: 418 AGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLIL 477

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK----KEATELFN 390
            G ++       K E  KL+  +E+  S+ G     ++    I+  FK     +A   F 
Sbjct: 478 YGSIIWGHCSQRKLEETKLI--LEEMKSR-GISANPVISTTIIDAYFKAGKSSDALNFFQ 534

Query: 391 SISKDVKKA----YCNCLIDLCVNLNLLENA----CKLLELGL--TLEVYTDI 433
            +     +A    YC  LID      ++E A    C++L LGL   + VYT +
Sbjct: 535 EMQDVGVEATIVTYC-VLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSL 586



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 154/346 (44%), Gaps = 22/346 (6%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G +E A   + R RN  +R  P A S   L+     +GN       + +M   G+ P++ 
Sbjct: 174 GLLEEANECFSRMRN--FRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVF 231

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++D + +       + ++ +M + GLSP+  TY SL+  YG+    E+  S++ EM
Sbjct: 232 TYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM 291

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+ G    +  YN L+           AFE F +MK++   +P+  T+S++I      G 
Sbjct: 292 KDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNN-GLKPNVVTYSTLIDAFCKEGM 350

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  +  +M   G  PN F  TSLI    KA    +  + LN + + G+         
Sbjct: 351 MQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVK-------- 402

Query: 338 LLNVMTQTPKEE----LGKLVECVEKSNSKL--GYVVKLLLEEQDIEGDFKKEATELFNS 391
            LN++T T   +     G+++E  E   S L  G      +    + G  K E  E    
Sbjct: 403 -LNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 461

Query: 392 ISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRS 437
           I K + +  CN   DL +  +++   C   +L  T  +  +++SR 
Sbjct: 462 ILKQMTE--CNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 505



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 6/219 (2%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           + EEMK+ G+  N +    ++D   +A +       ++EM D G+     TY  L+    
Sbjct: 497 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 556

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            A   E  +  +  M   G+Q +V +Y +L+         + A ++F++M+      PD 
Sbjct: 557 EAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQ-CRGMTPDI 615

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             F+++I      G + EA  + + M E   E +L V TSL+  + +        +  N 
Sbjct: 616 TAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNE 675

Query: 323 LPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           + E GI P++  C CLL    +      G+L E +E  N
Sbjct: 676 MIEKGILPEEVLCICLLREYYKR-----GQLDEAIELKN 709



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 1/208 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           +P   +T+I  Y  AG     LN ++EM+ +GV+  ++TY  L+D +  A         +
Sbjct: 509 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYF 568

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   GL PN   Y SL+         E    ++ EM+ +GM   +T +  L+      
Sbjct: 569 CRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKH 628

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA  +   M +    + D   ++S+++  S  G++ +A   FNEM+E G  P   +
Sbjct: 629 GNLQEALVLISRM-TELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVL 687

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELG 327
              L++ Y K  + D+ +   N +  + 
Sbjct: 688 CICLLREYYKRGQLDEAIELKNEMERMA 715



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 66/155 (42%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG VE+A   + R  +   + +   +++LI         +    +++EM+  G+ P++  
Sbjct: 558 AGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITA 617

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +  L+D   +     +   +   MT+  +  + + Y SL+  + +          + EM 
Sbjct: 618 FTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMI 677

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           EKG+     L   LL      G  DEA E+  +M+
Sbjct: 678 EKGILPEEVLCICLLREYYKRGQLDEAIELKNEME 712


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 115/238 (48%), Gaps = 5/238 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            R   ++ A GL+     +KWR  P+   ++ LI  +G AG +    N+ E+M    + P
Sbjct: 41  ARHNRIDQARGLFFEM--QKWRCKPDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPP 98

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  T+NNL++  G      +   + K+MTDNG+ P+  T+  +L AY         LS +
Sbjct: 99  SRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYF 158

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICS 273
             MK   ++   T  N ++     V    +A EIF  M+   + C+PD  TF+S+I + S
Sbjct: 159 ELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYS 218

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            RG++ + +A+F+ ML  G +PN+    +LI  Y       +     + +   G  PD
Sbjct: 219 VRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPD 276



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 133/325 (40%), Gaps = 72/325 (22%)

Query: 111 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN---------- 160
           R +  + R D   F+++I LY   G  + C  V+  M A G+KPN+++YN          
Sbjct: 197 REKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHG 256

Query: 161 -------------------------NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
                                    +L+ T GR+++P + + ++  M  N   PN  +Y 
Sbjct: 257 MDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYN 316

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA------------------ 237
           +L+ AYG   Y    + + REM++ G+  +V    TLLA C                   
Sbjct: 317 ALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELR 376

Query: 238 -----------------DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
                            ++G  ++A  ++  M+ ++  +PDS TF+ +I+ C    K  E
Sbjct: 377 GIHLNTIACNSAIGSYMNIGEYEKAINLYRSME-NKTTKPDSVTFTILISGCCRMSKYEE 435

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A   F EML+     +  + +S+I  Y K  +        N L   G  PD      ++N
Sbjct: 436 ALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMIN 495

Query: 341 VMTQTPK-EELGKLVECVEKSNSKL 364
             + +   E++  L + +E +N +L
Sbjct: 496 AYSASEMWEKVCALYQEMEANNIQL 520



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 99/229 (43%), Gaps = 3/229 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A  LY    N+  + D   F+ LI        ++  L  ++EM  + +  +   Y
Sbjct: 396 GEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIY 455

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           ++++    +  +  + ++++  +  +G  P+  TY +++ AY  +   E   ++Y+EM+ 
Sbjct: 456 SSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEA 515

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKV 278
             +QL     + L+              + E MK  E   P +   F  M++ CS     
Sbjct: 516 NNIQLDSIACSALMKAFNKGNQASNVLILAEIMK--EKGIPFNDANFFEMLSACSILRDW 573

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            +A  + N M  +    +L  +  L+Q  GK+ +T+ +++   R   LG
Sbjct: 574 RKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALG 622



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/233 (18%), Positives = 99/233 (42%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R    E A   +    + +  +    +S++I  Y   G      +++  +K  G  P+++
Sbjct: 429 RMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLV 488

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  +++    ++   +V  +Y+EM  N +  +    ++L++A+ +     + L +   M
Sbjct: 489 TYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIM 548

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG+  +   +  +L+ C+ +    +A ++   M+ S +      T + ++      GK
Sbjct: 549 KEKGIPFNDANFFEMLSACSILRDWRKATDLINLMEPSFHLVSLG-TINHLLQFLGKSGK 607

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                 +F   +  G   N+   + L++    A +    +  L  + + GI P
Sbjct: 608 TEIMIKLFYRFVALGSSVNINTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQP 660


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 120/224 (53%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L D  + +   +D   ++TLI      G +     +++EMKA G +P+ +T+N+LLD  G
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +A+R  +   + K+M + G +P+  TY SL+ AY +    E+ L + +EM+ +GM+  V 
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 362

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y TL++    +G  D A   + +M  +  C P+  T++++I +   RGK +E   +F++
Sbjct: 363 TYTTLISGLDRIGKIDAALATYSEMVRN-GCSPNLCTYNALIKMHGVRGKFTEMMIVFDD 421

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  AG+ P++    +L+  +G+     +V      + + G  P+
Sbjct: 422 LRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 465



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 125/284 (44%), Gaps = 40/284 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW------ 173
           D +A++ L+  +  AG F   + V+  M   GV+P ++TYN +L    +   PW      
Sbjct: 184 DASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVL 243

Query: 174 ------------------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
                                         +   ++ EM   G  P+  T+ SLL  YG+
Sbjct: 244 VDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGK 303

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           AR  E+ + V ++M+  G   SV  YN+L++     G  +EA E+ ++M+     +PD  
Sbjct: 304 ARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEME-FRGMKPDVV 362

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T++++I+     GK+  A A ++EM+  G  PNL    +LI+ +G   +  +++   + L
Sbjct: 363 TYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDL 422

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 367
              G  PD      LL V  Q     L   V  V K   K GY+
Sbjct: 423 RSAGYVPDVVTWNTLLAVFGQN---GLDSEVSGVFKEMKKAGYI 463



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 125/248 (50%), Gaps = 14/248 (5%)

Query: 98  RAGNVEMAFGLY-DRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           R G ++ A   Y +  RN      PN   ++ LIK++G  G F   + V++++++ G  P
Sbjct: 373 RIGKIDAALATYSEMVRNG---CSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVP 429

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++T+N LL   G+     +V  ++KEM   G  P  +TY SL+ +Y R    +  + +Y
Sbjct: 430 DVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIY 489

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           + M E G+   ++ YN +L+  A  G   +A ++F +M+   +C+PD  ++SS++   + 
Sbjct: 490 KRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEME-DRDCKPDELSYSSLLHAYAN 548

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             K+ + +A+  ++     EP+ +++ +L+    K     +  +A   L         R 
Sbjct: 549 AKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRR-------RR 601

Query: 335 CGCLLNVM 342
           C   +NV+
Sbjct: 602 CSLDINVL 609



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G    A  ++D  +   +  D   F++L+ +YG A   +  + V ++M+  G  P+++
Sbjct: 268 RRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVV 327

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+    +     +   + +EM   G+ P+  TY +L+    R    +  L+ Y EM
Sbjct: 328 TYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEM 387

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   ++  YN L+ M    G   E   +F+D++S+    PD  T+++++ +    G 
Sbjct: 388 VRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSA-GYVPDVVTWNTLLAVFGQNGL 446

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            SE   +F EM +AG+ P      SLI  Y +    D  +    R+ E GI PD
Sbjct: 447 DSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPD 500



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 3/251 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   E A G+  +  N         +++LI  Y   G  +  L + +EM+  G+KP+++
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG-RARYGEDTLSVYRE 216
           TY  L+  + R  +       Y EM  NG SPN  TY +L++ +G R ++ E  + V+ +
Sbjct: 363 TYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTE-MMIVFDD 421

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++  G    V  +NTLLA+    G   E   +F++MK +    P+  T+ S+I+  S  G
Sbjct: 422 LRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKA-GYIPERDTYVSLISSYSRCG 480

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              +A  ++  M+EAG  P++    +++    +  R     +    + +    PD+    
Sbjct: 481 LFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYS 540

Query: 337 CLLNVMTQTPK 347
            LL+      K
Sbjct: 541 SLLHAYANAKK 551



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 79/143 (55%)

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           +P+ + Y +L+  + RA    D ++V+R M + G+Q ++  YN +L + + +    +   
Sbjct: 182 APDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVV 241

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           +  D    +  + D +T++++I+ C  RG   EA  MF+EM  AGFEP+     SL+  Y
Sbjct: 242 VLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVY 301

Query: 308 GKAQRTDDVVRALNRLPELGITP 330
           GKA+R ++ +  L ++   G TP
Sbjct: 302 GKARRHEEAIGVLKKMENAGCTP 324



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 116/249 (46%), Gaps = 13/249 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN- 155
            R G    A  L+    +   + D  ++S+L+  Y  A   D    + E++ A  ++P+ 
Sbjct: 512 ARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHN 571

Query: 156 -----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
                ++  NN ++++   ++ +Q      E+     S + N   +++  YG+ +  +  
Sbjct: 572 WLVKTLVLVNNKVNSLSETEKAFQ------ELRRRRCSLDINVLNAMVSIYGKNKMVKKV 625

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             V   MKE  +  S   YN+L+ M + +G  ++   I  ++KSS   +PD ++++++I 
Sbjct: 626 EEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSS-GMRPDRYSYNTVIY 684

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               +G++ EA  +F+EM  +G +P++      I+ Y      ++ +  +  L   G  P
Sbjct: 685 AYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKP 744

Query: 331 DDRFCGCLL 339
           ++R    +L
Sbjct: 745 NERTYNSIL 753



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 118 RIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           RI+P+ +   TL+ +     +       ++E++      ++   N ++   G+ K   +V
Sbjct: 566 RIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKV 625

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + +   M +N ++ +  TY SL+  Y R    E   ++  E+K  GM+     YNT++  
Sbjct: 626 EEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYA 685

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G   EA  +F +MK S   +PD  T++  I          EA  +   ++  G +P
Sbjct: 686 YGRKGQMKEASRLFSEMKCS-GVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKP 744

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPDDR 333
           N     S+++ Y +  R  +    L+ LP++  GI+ +++
Sbjct: 745 NERTYNSILEGYCRHGRMVEAKSFLSNLPKIYPGISKEEK 784



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 50/107 (46%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+ E    +    ++   R D  +++T+I  YG  G       ++ EMK  GVKP++
Sbjct: 652 SRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDI 711

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           +TYN  + +        +   + + +   G  PN  TY S+L  Y R
Sbjct: 712 VTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCR 758


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 125/248 (50%), Gaps = 1/248 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  +++A  +Y +   E    +   ++ LI +Y     ++  + V + ++   ++  + 
Sbjct: 323 KANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVR 382

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++    ++ +P Q   +Y++M   G+ P+  TY +L+ AYG+    E  L ++R+M
Sbjct: 383 TYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDM 442

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G + +V  Y++L++ C   G  + A E+F  M   ENC+P+  TF+S+I  CS  G 
Sbjct: 443 IRRGCERNVITYSSLISACEKAGRWEMALELFSKMH-KENCKPNVVTFNSLIAACSHGGH 501

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             +A  +F +M   G +P+      LI  Y +  +    ++A  ++   G  PD      
Sbjct: 502 WEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNS 561

Query: 338 LLNVMTQT 345
           L+ V+ Q+
Sbjct: 562 LMEVLWQS 569



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 221/478 (46%), Gaps = 41/478 (8%)

Query: 84  SPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPN----------AFSTLIKLYGT 133
           S  A+ LKE +   + G ++ A  ++D  RN    ++P+           ++T+I   G+
Sbjct: 236 SAMAALLKELA---KQGYLKRAVEIFDWLRN----LEPSHELSSLCDLYTYTTMISQCGS 288

Query: 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
                  L +  EM++ G+  N+ TY+ L++   +A      + +YK+M + G SPN  T
Sbjct: 289 HQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVT 348

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           Y  L+  Y +    E+ + V   ++++ +Q  V  YNT+++ C   G  ++A +++E M 
Sbjct: 349 YNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKML 408

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
           ++   +P + T++++I+    +G+V +A  +F +M+  G E N+   +SLI    KA R 
Sbjct: 409 AA-GVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRW 467

Query: 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKL-L 371
           +  +   +++ +    P+      L+   +     E+  +L E ++    K   +    L
Sbjct: 468 EMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGL 527

Query: 372 LEEQDIEGDFKK--EATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLT--- 426
           +   +  G +++  +A E   +       A  N L+++     +L    K L+L      
Sbjct: 528 ITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSGVLLAQSKALQLWTLANR 587

Query: 427 ---LEVYTDI-QSRSPTQWSLHLKSLSLGAALTALHIWINDL-SKALESGEEFPPLLGIN 481
                +YT+  Q  +  Q+S    + + GAA+  +  W+++L +K L+ G  F     + 
Sbjct: 588 SGHFRIYTNSKQDSNVLQYS--TVAFTSGAAVVTVVRWVSELKNKLLKDGPGFFRDKVVF 645

Query: 482 TGH-GKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWF---LTTEAAAKS---WLES 532
           T H  K   S++  A +FES    L    + SP  +  F   +T EAAA     WL S
Sbjct: 646 TLHKSKQNRSEQPSARIFES--VSLLLAGNASPFTMHLFDQTITLEAAAAPLTVWLRS 701


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 124/250 (49%), Gaps = 1/250 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G +E AF ++ +   E    D  A+++L+ + G  G     L ++  M      P+++
Sbjct: 750 KSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVV 809

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+D++G+  R  +    ++     G +PN   Y+SL+ ++G+    +  L ++ EM
Sbjct: 810 TYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEM 869

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +    ++  YN LL+  A  G  + A ++ E+M+    C PD  T++ +I      G 
Sbjct: 870 QRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKV-GCVPDLVTYNILIDGVGKMGM 928

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V EAE+ F  M E G  P++   TSLI+  GK  +  +     + + E G  P       
Sbjct: 929 VDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNV 988

Query: 338 LLNVMTQTPK 347
           L++++ +  K
Sbjct: 989 LIDILGRAGK 998



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 153/332 (46%), Gaps = 38/332 (11%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             ++  V+ A  L D  +N+    D   +++L+   G +G  +   N++ +M   G +P++
Sbjct: 714  VKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDV 773

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            + Y +L+D +G+  +      I++ M      P+  TY+SL+ + G+    E+    +  
Sbjct: 774  VAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFEN 833

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
               KG   +V +Y++L+      G  D A E+FE+M+  + C P+  T++++++  +  G
Sbjct: 834  SISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQ-CPPNIVTYNNLLSGLAKAG 892

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +++ AE +  EM + G  P+L     LI   GK    D+      R+ E GI PD     
Sbjct: 893  RLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPD----- 947

Query: 337  CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
                V+T T       L+E        LG V KLL            EA ELF+S+ ++ 
Sbjct: 948  ----VITFT------SLIE-------SLGKVDKLL------------EACELFDSMEEE- 977

Query: 397  KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428
               Y   ++   V +++L  A K+ E  +   
Sbjct: 978  --GYNPSVVTYNVLIDILGRAGKVHEAAMIFH 1007



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 167/366 (45%), Gaps = 46/366 (12%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG +E A  ++   +      D  A++TLI   G AG  D    +++EMK  G+ PN+
Sbjct: 368 AKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNL 427

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN ++  +G+A R  +   ++ ++ + G  P+  TY +L+   G+    +  L++ +E
Sbjct: 428 RTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKE 487

Query: 217 MKEKGMQ-------------------------------LSVTLYNTLLAMCADVGYTDEA 245
           M EKG +                               L    YNTL++     G+ DEA
Sbjct: 488 MVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEA 547

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            ++ E MK  E C P   T+++++      G++ EA ++  EM + G EP++   +SL+ 
Sbjct: 548 VKLLEVMKKHE-CIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMA 606

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-----EELGKLVECVEKS 360
            + K  + ++ +   + +   G   D      ++N + ++       +  G++ E  E  
Sbjct: 607 SFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKE--EGM 664

Query: 361 NSKLGYVVKLLLE-EQDIEGDFKKEATELFNSISKD--VKKAYC-NCLIDLCVNLNLLEN 416
              LG    LL    +D + DF   A ++FN + +   V   +  N +++  V  N ++ 
Sbjct: 665 EPLLGNYKTLLSSLVKDEKIDF---ALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDE 721

Query: 417 ACKLLE 422
           ACKL++
Sbjct: 722 ACKLVD 727



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 102/199 (51%), Gaps = 1/199 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G VE A+  ++ + ++    +   +S+LI  +G  G  D  L ++EEM+     PN++
Sbjct: 820  KEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIV 879

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            TYNNLL  + +A R    + + +EM   G  P+  TY  L+   G+    ++  S ++ M
Sbjct: 880  TYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRM 939

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            KEKG+   V  + +L+     V    EA E+F+ M+  E   P   T++ +I I    GK
Sbjct: 940  KEKGIVPDVITFTSLIESLGKVDKLLEACELFDSME-EEGYNPSVVTYNVLIDILGRAGK 998

Query: 278  VSEAEAMFNEMLEAGFEPN 296
            V EA  +F+EM   G  P+
Sbjct: 999  VHEAAMIFHEMKVKGCMPD 1017



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 99/181 (54%), Gaps = 3/181 (1%)

Query: 116 KWRIDP--NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  IDP  + F+ LI     +GN D     +  MK +   PN++TY  L++ + +A R  
Sbjct: 315 KSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLE 374

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++ EM +N  SP+   Y +L+   G+A   +    +++EMK++G+  ++  YN ++
Sbjct: 375 EACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMI 434

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
           ++    G   EA+++F D+K  +   PD +T++++I +    G++ +  A+  EM+E G 
Sbjct: 435 SVLGKAGRQPEAWQLFHDLK-EQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGG 493

Query: 294 E 294
           E
Sbjct: 494 E 494



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 3/214 (1%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           ++RI P+A  F   +  +  +G  D      +EM   G+ P + T+  L+D + ++    
Sbjct: 280 QFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNID 339

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +    +  M +   SPN  TY +L+    +A   E+   V+ EMKE         YNTL+
Sbjct: 340 EACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLI 399

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G  D A  +F++MK      P+  T++ MI++    G+  EA  +F+++ E G 
Sbjct: 400 DGLGKAGEADMACGLFKEMK-DRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGA 458

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            P++F   +LI   GK  + D V+  +  + E G
Sbjct: 459 VPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 149/354 (42%), Gaps = 56/354 (15%)

Query: 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---------- 164
           E  RI  +  ++L++ +G+  N  G L ++ +MK+ G  P+   YN +L+          
Sbjct: 211 EGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHS 270

Query: 165 -------------------------TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
                                    +  R+ R        +EM  +G+ P  +T+  L+ 
Sbjct: 271 AVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLID 330

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
           A  ++   ++    +  MK      +V  Y TL+   A  G  +EA E+F +MK + NC 
Sbjct: 331 ALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKEN-NCS 389

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           PD+  ++++I      G+   A  +F EM + G  PNL     +I   GKA R  +  + 
Sbjct: 390 PDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQL 449

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQ---------TPKEELGKLVECVEKSNSKLGYVVKL 370
            + L E G  PD      L++V+ +           KE + K  EC+   +S  G+    
Sbjct: 450 FHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGH---- 505

Query: 371 LLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLENACKLLEL 423
              E  IEG    + T  + S+  K + +   N L+   ++   ++ A KLLE+
Sbjct: 506 ---EGTIEG---ADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEV 553



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++ +V+ A  ++ R + E        + TL+         D  L ++ E++   + P+  
Sbjct: 645 KSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTF 704

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +++ + ++ R  +   +   M +  + P+  TY SLL   G++   E+  +++ +M
Sbjct: 705 VYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKM 764

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E+G +  V  Y +L+ +    G    A  IF  M + + C PD  T+SS+I      G+
Sbjct: 765 TEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAM-AKKRCVPDVVTYSSLIDSLGKEGR 823

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           V EA   F   +  G  PN+ V +SLI  +GK    D   RAL    E+
Sbjct: 824 VEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVD---RALELFEEM 869



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 127/283 (44%), Gaps = 42/283 (14%)

Query: 90  LKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 143
           L E +Y+T        G+V+ A  L +  +  +       ++TL+   G AG  D  +++
Sbjct: 526 LGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSL 585

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
             EM+  G +P+++TY++L+ +  +  +  +  +++ EM   G   + +TY+ ++    +
Sbjct: 586 LREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCK 645

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLA----------------------MCADV-- 239
           +   +  L V+  MKE+GM+  +  Y TLL+                      +  D   
Sbjct: 646 SDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFV 705

Query: 240 -----------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
                         DEA ++ + MK ++N  PD +T++S++      G++ EA  MF +M
Sbjct: 706 YNIMVNGLVKSNRVDEACKLVDSMK-NQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKM 764

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            E G EP++   TSL+   GK  +    +     + +    PD
Sbjct: 765 TEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPD 807



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 1/192 (0%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++  +  A+    V  I   M   G   + +   SLLR +G        L ++ +M
Sbjct: 184 TYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQM 243

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G   S  +YN +L +    G+   A  +F  +      QPD+ TF   +   +  G+
Sbjct: 244 KSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKL-GQFRIQPDAQTFRIFVHSFNRSGR 302

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A     EM+++G +P +   T LI    K+   D+  +  N +  L  +P+      
Sbjct: 303 LDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTT 362

Query: 338 LLNVMTQTPKEE 349
           L+N + +  + E
Sbjct: 363 LVNGLAKAGRLE 374



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 36/260 (13%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +IK    A   D  + +   M   G + +M    +LL T G          I+ +M 
Sbjct: 185 YTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMK 244

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVY----------------------------- 214
             G +P+ N Y  +L    +  +    + V+                             
Sbjct: 245 SFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLD 304

Query: 215 ------REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
                 +EM + G+   V  +  L+      G  DEA + F  MK+   C P+  T++++
Sbjct: 305 PAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLR-CSPNVVTYTTL 363

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +   +  G++ EA  +F EM E    P+     +LI   GKA   D        + + G+
Sbjct: 364 VNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGL 423

Query: 329 TPDDRFCGCLLNVMTQTPKE 348
            P+ R    +++V+ +  ++
Sbjct: 424 VPNLRTYNIMISVLGKAGRQ 443



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G V+ A   + R + +    D   F++LI+  G          +++ M+  G  P+++
Sbjct: 925  KMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVV 984

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
            TYN L+D +GRA +  +   I+ EM   G  P+  T   + R
Sbjct: 985  TYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKR 1026


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 157/333 (47%), Gaps = 23/333 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  L+ + R     ++   ++ LI     AG  D  + + +EM   GV  N++
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D + + ++  + + + + M   G+  N   Y +L+  +   +  E  L +  EM
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEM 424

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K KG++L ++LY  L+    +V   DEA  +   M  S   +P+   +++M+  C   GK
Sbjct: 425 KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES-GLEPNYIIYTTMMDACFKSGK 483

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD------ 331
           V EA AM  ++L++GF+PN+    +LI    KA   D+ +   N++ +LG+ P+      
Sbjct: 484 VPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTA 543

Query: 332 --DRFC--GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL--LLEEQDIEGDFKKEA 385
             D  C  GC LN   Q   E + K       S  K+ Y   L   L++ ++   F  +A
Sbjct: 544 LVDGLCKNGC-LNEAVQLFNEMVHK-----GMSLDKVVYTALLDGYLKQGNLHDAFALKA 597

Query: 386 TELFNSISKDVKKAYC-NCLIDLCVNLNLLENA 417
             + + +  D+   +C  C I    NLN++  A
Sbjct: 598 KMIDSGLQLDL---FCYTCFISGFCNLNMMPEA 627



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 22/284 (7%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCL--NVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           AR  + R+ PN  +    L   A +  G L   ++E++ A    PN+ T+N ++D + + 
Sbjct: 146 ARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKE 201

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               + ++++  M + G  P+  T+ SL+  YG+    ++   +  EM+  G +  V  Y
Sbjct: 202 GELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTY 261

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N L+      G  + A+  F  MK  E    +  TFS+ +      G V EA  +F +M 
Sbjct: 262 NALINCFCKFGRMETAYGYFAAMK-REGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMR 320

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--- 346
             G   N F  T LI    KA R DD +  L+ +   G+          LNV+T T    
Sbjct: 321 VRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVP---------LNVVTYTVLVD 371

Query: 347 ---KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 387
              KE      E V +   K G     LL    I G F  + +E
Sbjct: 372 GLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSE 415



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 120/257 (46%), Gaps = 6/257 (2%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N E A GL    +N+   +D + +  LI+        D   ++  +M   G++PN I Y 
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D   ++ +  +   + +++ D+G  PN  TY +L+    +A   ++ +S + +M++ 
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDL 532

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+  +V  Y  L+      G  +EA ++F +M   +    D   +++++     +G + +
Sbjct: 533 GLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM-VHKGMSLDKVVYTALLDGYLKQGNLHD 591

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A A+  +M+++G + +LF  T  I  +       +     + +   GI PD     CL+ 
Sbjct: 592 AFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI- 650

Query: 341 VMTQTPKEELGKLVECV 357
               +  ++LG L E +
Sbjct: 651 ----SKYQKLGNLEEAI 663



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 127/273 (46%), Gaps = 4/273 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  L+ R +      D   F++LI  YG  G  D    + EEM+  G K +++
Sbjct: 200 KEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVV 259

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   +  R       +  M   G+  N  T+++ + A+ +     + + ++ +M
Sbjct: 260 TYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQM 319

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
           + +GM L+   Y  L+      G  D+A  + ++M   +    +  T++ ++  +C  R 
Sbjct: 320 RVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEM-VRQGVPLNVVTYTVLVDGLCKER- 377

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           KV+EAE +   M +AG   N  + T+LI  +   + ++  +  L+ +   G+  D    G
Sbjct: 378 KVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYG 437

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 368
            L+  +    K +E   L+  +++S  +  Y++
Sbjct: 438 ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYII 470



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 7/240 (2%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+   +I      G      +++  MK +G  P+++T+N+L+D  G+     +V+ +
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA 237
            +EM  +G   +  TY +L+  + +    E     +  MK +G+  +V  ++T + A C 
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           + G   EA ++F  M+       + +T++ +I      G++ +A  + +EM+  G   N+
Sbjct: 306 E-GLVREAMKLFAQMR-VRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNV 363

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL--NVMTQTPKEELGKLVE 355
              T L+    K ++  +    L  + + G+  ++     L+  + M +  ++ LG L E
Sbjct: 364 VTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE 423



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 90/191 (47%), Gaps = 1/191 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G V  A  +  +  +  ++ +   +  LI     AG+ D  ++ + +M+ +G+ PN+ 
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D + +     +   ++ EM   G+S +   Y +LL  Y +     D  ++  +M
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+QL +  Y   ++   ++    EA E+F +M       PD   ++ +I+     G 
Sbjct: 600 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM-IGHGIAPDRAVYNCLISKYQKLGN 658

Query: 278 VSEAEAMFNEM 288
           + EA ++ +EM
Sbjct: 659 LEEAISLQDEM 669



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLN----VYEEMKAIG 151
           +AG+++ A   +++ R+    +DPN  A++ L+   G   N  GCLN    ++ EM   G
Sbjct: 515 KAGSIDEAISHFNKMRD--LGLDPNVQAYTALVD--GLCKN--GCLNEAVQLFNEMVHKG 568

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           +  + + Y  LLD   +         +  +M D+GL  +   Y   +  +       +  
Sbjct: 569 MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAR 628

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
            V+ EM   G+     +YN L++    +G  +EA  + ++M+
Sbjct: 629 EVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEME 670


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 157/333 (47%), Gaps = 23/333 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  L+ + R     ++   ++ LI     AG  D  + + +EM   GV  N++
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D + + ++  + + + + M   G+  N   Y +L+  +   +  E  L +  EM
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEM 424

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K KG++L ++LY  L+    +V   DEA  +   M  S   +P+   +++M+  C   GK
Sbjct: 425 KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES-GLEPNYIIYTTMMDACFKSGK 483

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD------ 331
           V EA AM  ++L++GF+PN+    +LI    KA   D+ +   N++ +LG+ P+      
Sbjct: 484 VPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTA 543

Query: 332 --DRFC--GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL--LLEEQDIEGDFKKEA 385
             D  C  GC LN   Q   E + K       S  K+ Y   L   L++ ++   F  +A
Sbjct: 544 LVDGLCKNGC-LNEAVQLFNEMVHK-----GMSLDKVVYTALLDGYLKQGNLHDAFALKA 597

Query: 386 TELFNSISKDVKKAYC-NCLIDLCVNLNLLENA 417
             + + +  D+   +C  C I    NLN++  A
Sbjct: 598 KMIDSGLQLDL---FCYTCFISGFCNLNMMPEA 627



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 22/284 (7%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCL--NVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           AR  + R+ PN  +    L   A +  G L   ++E++ A    PN+ T+N ++D + + 
Sbjct: 146 ARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKE 201

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               + ++++  M + G  P+  T+ SL+  YG+    ++   +  EM+  G +  V  Y
Sbjct: 202 GELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTY 261

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N L+      G  + A+  F  MK  E    +  TFS+ +      G V EA  +F +M 
Sbjct: 262 NALINCFCKFGRMETAYGYFAAMK-REGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMR 320

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--- 346
             G   N F  T LI    KA R DD +  L+ +   G+          LNV+T T    
Sbjct: 321 VRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVP---------LNVVTYTVLVD 371

Query: 347 ---KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 387
              KE      E V +   K G     LL    I G F  + +E
Sbjct: 372 GLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSE 415



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 120/257 (46%), Gaps = 6/257 (2%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N E A GL    +N+   +D + +  LI+        D   ++  +M   G++PN I Y 
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D   ++ +  +   + +++ D+G  PN  TY +L+    +A   ++ +S + +M++ 
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDL 532

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+  +V  Y  L+      G  +EA ++F +M   +    D   +++++     +G + +
Sbjct: 533 GLDPNVQAYTALVDGLCKNGCLNEAVQLFNEM-VHKGMSLDKVVYTALLDGYLKQGNLHD 591

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A A+  +M+++G + +LF  T  I  +       +     + +   GI PD     CL+ 
Sbjct: 592 AFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI- 650

Query: 341 VMTQTPKEELGKLVECV 357
               +  ++LG L E +
Sbjct: 651 ----SKYQKLGNLEEAI 663



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 127/273 (46%), Gaps = 4/273 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  L+ R +      D   F++LI  YG  G  D    + EEM+  G K +++
Sbjct: 200 KEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVV 259

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   +  R       +  M   G+  N  T+++ + A+ +     + + ++ +M
Sbjct: 260 TYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQM 319

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
           + +GM L+   Y  L+      G  D+A  + ++M   +    +  T++ ++  +C  R 
Sbjct: 320 RVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEM-VRQGVPLNVVTYTVLVDGLCKER- 377

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           KV+EAE +   M +AG   N  + T+LI  +   + ++  +  L+ +   G+  D    G
Sbjct: 378 KVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYG 437

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 368
            L+  +    K +E   L+  +++S  +  Y++
Sbjct: 438 ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYII 470



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 7/240 (2%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+   +I      G      +++  MK +G  P+++T+N+L+D  G+     +V+ +
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA 237
            +EM  +G   +  TY +L+  + +    E     +  MK +G+  +V  ++T + A C 
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           + G   EA ++F  M+       + +T++ +I      G++ +A  + +EM+  G   N+
Sbjct: 306 E-GLVREAMKLFAQMR-VRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNV 363

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL--NVMTQTPKEELGKLVE 355
              T L+    K ++  +    L  + + G+  ++     L+  + M +  ++ LG L E
Sbjct: 364 VTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE 423



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 90/191 (47%), Gaps = 1/191 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G V  A  +  +  +  ++ +   +  LI     AG+ D  ++ + +M+ +G+ PN+ 
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D + +     +   ++ EM   G+S +   Y +LL  Y +     D  ++  +M
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+QL +  Y   ++   ++    EA E+F +M       PD   ++ +I+     G 
Sbjct: 600 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM-IGHGIAPDRAVYNCLISKYQKLGN 658

Query: 278 VSEAEAMFNEM 288
           + EA ++ +EM
Sbjct: 659 LEEAISLQDEM 669



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLN----VYEEMKAIG 151
           +AG+++ A   +++ R+    +DPN  A++ L+   G   N  GCLN    ++ EM   G
Sbjct: 515 KAGSIDEAISHFNKMRD--LGLDPNVQAYTALVD--GLCKN--GCLNEAVQLFNEMVHKG 568

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           +  + + Y  LLD   +         +  +M D+GL  +   Y   +  +       +  
Sbjct: 569 MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAR 628

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            V+ EM   G+     +YN L++    +G  +EA  + ++M+       DS T +   ++
Sbjct: 629 EVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSCTDSDTATDAGSV 688

Query: 272 CS 273
           C+
Sbjct: 689 CT 690


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 113/247 (45%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI        ++    V+EEMK  G  P+ +T+N LLD  G+++RP +   + 
Sbjct: 287 DDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVL 346

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KEM  +G SP+  TY SL+ AY R     + + +  +M EKG++  V  Y TLL+     
Sbjct: 347 KEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKA 406

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-------------------ICSC------ 274
           G  + A  IF +M+++  C+P+  TF+++I                    IC+C      
Sbjct: 407 GMDEPAMRIFGEMRAA-GCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVT 465

Query: 275 ----------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
                      G  SE   +F EM  AGF P      +LI  Y +       +    R+ 
Sbjct: 466 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRML 525

Query: 325 ELGITPD 331
           E G+TPD
Sbjct: 526 EAGVTPD 532



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 130/283 (45%), Gaps = 37/283 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF------------DGC----- 140
           + G V  A  + +  R + + +D  A+++LI  Y + G +            +GC     
Sbjct: 194 KEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLI 253

Query: 141 -----LNVYEEM--------------KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                LNVY +M              K+ GV P+  TYN L+    R     +   +++E
Sbjct: 254 TYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEE 313

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +G SP+  T+ +LL  YG++R  ++ + V +EM+  G   S+  YN+L++  A  G 
Sbjct: 314 MKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGL 373

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             EA E+ +D    +  +PD +T++++++     G    A  +F EM  AG +PN+    
Sbjct: 374 LREAMEL-KDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFN 432

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +LI+ +G   R  ++++    +      PD      LL V  Q
Sbjct: 433 ALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQ 475



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 37/268 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  E A  ++   R    + +   F+ LIK++G  G F   + V+EE++     P+++
Sbjct: 405 KAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIV 464

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM   G  P  +T+ +L+ AY R    +  ++VY+ M
Sbjct: 465 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRM 524

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-------- 269
            E G+   ++ YN +LA  A  G  +++ ++F +MK    C+P+  T+ S++        
Sbjct: 525 LEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGR-CKPNELTYCSLLHAYANSKE 583

Query: 270 ------------------------TICSCRGK---VSEAEAMFNEMLEAGFEPNLFVLTS 302
                                   T+     K   + E E  F E+ + G  P+L  L +
Sbjct: 584 IERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNA 642

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
           +I  YG+ Q        LN + E G +P
Sbjct: 643 MIAIYGRRQMVAKANEILNFMNESGFSP 670



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 2/225 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           G++   +   +  + + F+TLI  Y   G+F   + VY+ M   GV P++ +YN +L  +
Sbjct: 484 GVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAAL 543

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            R     Q + ++ EM D    PN  TY SLL AY  ++  E   ++  E+     +   
Sbjct: 544 ARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVP 603

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
            L  TL+ + +      E    FE++K  +   PD  T ++MI I   R  V++A  + N
Sbjct: 604 VLLKTLVLVNSKCDLLMETEHAFEELK--KKGSPDLSTLNAMIAIYGRRQMVAKANEILN 661

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            M E+GF P+L    SL+  + +++  +     L  +   G+ PD
Sbjct: 662 FMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPD 706



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 2/208 (0%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + +I + G  G      ++   ++  G   ++  Y +L+       R      ++K+M +
Sbjct: 186 AVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEE 245

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            G  P   TY  +L  YG+       +S +   MK  G+      YNTL++ C      +
Sbjct: 246 EGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYE 305

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA ++FE+MK S    PD  TF++++ +     +  EA  +  EM  +GF P++    SL
Sbjct: 306 EAAQVFEEMKLS-GFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSL 364

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I  Y +     + +   +++ E GI PD
Sbjct: 365 ISAYARDGLLREAMELKDQMVEKGIKPD 392



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 2/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+ + A  +Y R        D ++++ ++      G ++    V+ EMK    KPN 
Sbjct: 509 SRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNE 568

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +LL     +K   ++ T+ +E+      P      +L+    +     +T   + E
Sbjct: 569 LTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEE 628

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K+KG     TL N ++A+        +A EI   M  S    P   T++S++ + S   
Sbjct: 629 LKKKGSPDLSTL-NAMIAIYGRRQMVAKANEILNFMNES-GFSPSLATYNSLMYMHSRSE 686

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               +E +  E+L  G +P+L    ++I  Y +  R  D  R  + +   G+ PD
Sbjct: 687 NFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPD 741



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 2/185 (1%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           + +EE+K  G  P++ T N ++   GR +   +   I   M ++G SP+  TY SL+  +
Sbjct: 624 HAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMH 682

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            R+   E +  V +E+  KG++  +  YNT++      G   +A  IF  MK+     PD
Sbjct: 683 SRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTY-GLVPD 741

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             T+++ +   +      +A  +   M++ G + N     S++  Y K  R  D +  ++
Sbjct: 742 VITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYCKHSRRADAIMFVS 801

Query: 322 RLPEL 326
            L +L
Sbjct: 802 SLNQL 806



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++L+ ++  + NF+    V +E+ A G+KP++I+YN ++    R  R      I+  M 
Sbjct: 675 YNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMK 734

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             GL P+  TY + + +Y      ED + V R M + G + +   YN+++
Sbjct: 735 TYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIV 784



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D +  + +I +YG          +   M   G  P++ TYN+L+    R++   + + + 
Sbjct: 636 DLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVL 695

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KE+   GL P+  +Y +++ AY R    +D   ++  MK  G+   V  YNT +A  A  
Sbjct: 696 KEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAAD 755

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
              ++A  +   M     C+ +  T++S++
Sbjct: 756 SLFEDAIGVVRYM-IKHGCKRNQNTYNSIV 784



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 17/133 (12%)

Query: 222 MQLSVTLYNTL----LAMCADVGY---TDEAFEIF------EDMKSSENCQPDSWTFSSM 268
           + LS   +N+L    L +   +G+    D A  +F      ED +S  NC       + +
Sbjct: 133 LSLSSGTWNSLSMDVLGIIKGLGFYKKCDMAMSVFSWVREREDFESVLNCS----VVAVI 188

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           IT+    GKVS A ++ N + + GF+ +++  TSLI  Y    R  D V    ++ E G 
Sbjct: 189 ITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGC 248

Query: 329 TPDDRFCGCLLNV 341
            P       +LNV
Sbjct: 249 KPTLITYNVILNV 261


>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
          Length = 762

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 157/339 (46%), Gaps = 8/339 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  +++  +   +  D   + TLI ++   G  +  +++Y  M+ +G+ P+  
Sbjct: 413 RANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTF 472

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+         ++ EM +NG +PN  TY  ++    +AR  E+ + +Y++M
Sbjct: 473 TYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 532

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     Y+ ++ +    G+ DEA  +F +M+   +  PD   +  ++ +    G 
Sbjct: 533 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR--HDWAPDEPVYGLLVDLWGKAGN 590

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   ++ ML+ G +PN+    SL+  + K  R  D    L  +   G+ P  +    
Sbjct: 591 VDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTL 650

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF----NSIS 393
           LL+  T+  + ++G   + +  +     ++  L L + +  G   ++ T  F    +S  
Sbjct: 651 LLSCCTEA-QAQMGLCCQLMAITGHP-AHMFLLYLPDAEPGGQNVRDHTRYFLDMMHSED 708

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432
           ++ K+   + +ID      L E A  + E+     VY D
Sbjct: 709 RESKRGLMDAVIDFLHKSGLKEEAGFIWEVAAQRNVYPD 747



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G +     Y T++ +           ++ ++M +S +C+P   T++ +I        
Sbjct: 358 RQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEM-NSVHCKPTVVTYNRIIHAYGRANY 416

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F EM +AG+EP+     +LI  + K    +  +    R+ E+G++PD      
Sbjct: 417 LREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSA 476

Query: 338 LLNVM 342
           ++N +
Sbjct: 477 MVNCL 481


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 118/225 (52%), Gaps = 1/225 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
            L D  + +    D   ++TLI      G       V++EMKA G +P+ +T+N+LLD  
Sbjct: 241 ALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVY 300

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           G+A++  +   + K M + G +P+  TY SL+ AY +    E+ L + +EM+ +GM+  V
Sbjct: 301 GKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDV 360

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y TL++    VG  D A   + +M  +  C P+  T++++I +   RGK +E  A+F+
Sbjct: 361 VTYTTLISGLDRVGKIDAALATYSEMVRN-GCSPNLCTYNALIKLHGVRGKFTEMMAVFD 419

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++  AG+ P++    +L+  +G+     +V      + + G  P+
Sbjct: 420 DLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPE 464



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 40/284 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW------ 173
           D +A++ L+  +  AG F   + V++ M   GV+P ++TYN +     +   PW      
Sbjct: 183 DASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVAL 242

Query: 174 ------------------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
                                         +   ++ EM   G  P+  T+ SLL  YG+
Sbjct: 243 VDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGK 302

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           AR  E+ + V + M+  G   SV  YN+L++     G  +EA E+ ++M+     +PD  
Sbjct: 303 ARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEME-FRGMKPDVV 361

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T++++I+     GK+  A A ++EM+  G  PNL    +LI+ +G   +  +++   + L
Sbjct: 362 TYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDL 421

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 367
              G  PD      LL+V  Q     L   V  V K   K GY+
Sbjct: 422 RSAGYVPDVVTWNTLLSVFGQN---GLDSEVSGVFKEMKKAGYI 462



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 1/247 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G    A  ++D  +   +  D   F++L+ +YG A   +  + V + M+  G  P+++
Sbjct: 267 RRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVV 326

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+    +     +   + +EM   G+ P+  TY +L+    R    +  L+ Y EM
Sbjct: 327 TYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEM 386

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   ++  YN L+ +    G   E   +F+D++S+    PD  T+++++++    G 
Sbjct: 387 VRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSA-GYVPDVVTWNTLLSVFGQNGL 445

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            SE   +F EM +AG+ P      SLI  Y +    D  +    R+ E GI PD      
Sbjct: 446 DSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNA 505

Query: 338 LLNVMTQ 344
           +L+ + +
Sbjct: 506 VLSALAR 512



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 123/248 (49%), Gaps = 14/248 (5%)

Query: 98  RAGNVEMAFGLY-DRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           R G ++ A   Y +  RN      PN   ++ LIKL+G  G F   + V++++++ G  P
Sbjct: 372 RVGKIDAALATYSEMVRNG---CSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVP 428

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++T+N LL   G+     +V  ++KEM   G  P  +TY SL+ +Y R    +  + +Y
Sbjct: 429 DVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIY 488

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           + M E G+   ++ YN +L+  A  G  ++A ++F +M    +C+PD  ++SS++   + 
Sbjct: 489 KRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEM-VDRDCKPDELSYSSLLHAYAN 547

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             K+ + + +  ++     E + +++ +L+    K     +  +A   L         R 
Sbjct: 548 AKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRR-------RR 600

Query: 335 CGCLLNVM 342
           C   +NV+
Sbjct: 601 CSLDINVL 608



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 119/251 (47%), Gaps = 3/251 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   E A G+  R  N         +++LI  Y   G  +  L + +EM+  G+KP+++
Sbjct: 302 KARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 361

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG-RARYGEDTLSVYRE 216
           TY  L+  + R  +       Y EM  NG SPN  TY +L++ +G R ++ E  ++V+ +
Sbjct: 362 TYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTE-MMAVFDD 420

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++  G    V  +NTLL++    G   E   +F++MK +    P+  T+ S+I+  S  G
Sbjct: 421 LRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKA-GYIPERDTYVSLISSYSRCG 479

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              +A  ++  M+EAG  P++    +++    +  R +   +    + +    PD+    
Sbjct: 480 LFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYS 539

Query: 337 CLLNVMTQTPK 347
            LL+      K
Sbjct: 540 SLLHAYANAKK 550



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 9/239 (3%)

Query: 97  TRAGNVEMAFGLYDRARN---EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           +R G+  +A  +   AR+   ++    P    T I+++  AG    CL     +      
Sbjct: 126 SRGGHPGIAVAVVRAARDLHGDRALHHPRVLPTAIRVFARAG----CLAEASAILEAAPA 181

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLS 212
           P+   Y  L+    RA R      +++ M D G+ P   TY  +  AY +     ++ ++
Sbjct: 182 PDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVA 241

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +   MKE G++     YNTL++ C   G   EA ++F++MK++   +PD  TF+S++ + 
Sbjct: 242 LVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAA-GFEPDKVTFNSLLDVY 300

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               K  EA  +   M  AG  P++    SLI  Y K    ++ +     +   G+ PD
Sbjct: 301 GKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPD 359



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 112/260 (43%), Gaps = 36/260 (13%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           G++   +   +  + + + +LI  Y   G FD  + +Y+ M   G+ P++ TYN +L  +
Sbjct: 451 GVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSAL 510

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR------------YGE------ 208
            R  R  Q + ++ EM D    P+  +Y+SLL AY  A+            Y E      
Sbjct: 511 ARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHN 570

Query: 209 -----------------DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
                            +T   ++E++ +   L + + N ++++        +  E+   
Sbjct: 571 WLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSL 630

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M  + +    + T++S++ + S  G   + E++  E+  +G  P+ +   ++I  YG+  
Sbjct: 631 MMEN-SINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKG 689

Query: 312 RTDDVVRALNRLPELGITPD 331
           +  +  R  + +   G+ PD
Sbjct: 690 QMKEASRLFSEMKCSGVKPD 709



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 125/295 (42%), Gaps = 41/295 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  + A  +Y R        D + ++ ++      G ++    ++ EM     KP+ 
Sbjct: 476 SRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDE 535

Query: 157 ITYNNLLDTMGRAKR-------------------PWQVKTI----------------YKE 181
           ++Y++LL     AK+                    W VKT+                ++E
Sbjct: 536 LSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQE 595

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +     S + N   +++  YG+ +  +    V   M E  +  S   YN+L+ M + +G 
Sbjct: 596 LRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGD 655

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++   I  ++KSS   +PD ++++++I     +G++ EA  +F+EM  +G +P++    
Sbjct: 656 CEKCESILTEIKSS-GMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYN 714

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
             I+ Y      ++ +  +  L   G  P++R    +L   ++      G++VE 
Sbjct: 715 IFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRH-----GRMVEA 764



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 90/181 (49%), Gaps = 3/181 (1%)

Query: 109 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           +   R  +  +D N  + ++ +YG          V   M    +  +  TYN+L+    R
Sbjct: 593 FQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSR 652

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
                + ++I  E+  +G+ P+  +Y +++ AYGR    ++   ++ EMK  G++  +  
Sbjct: 653 LGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVT 712

Query: 229 YNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           YN  + +  A++ + +EA ++   +  ++ C+P+  TF+S++   S  G++ EA++  + 
Sbjct: 713 YNIFIKSYVANIMF-EEAIDLVRYL-VTQGCRPNERTFNSILQGYSRHGRMVEAKSFLSN 770

Query: 288 M 288
           +
Sbjct: 771 L 771



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 8/226 (3%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           +R     W +      TL+ +     N       ++E++      ++   N ++   G+ 
Sbjct: 564 ERIERHNWLV-----KTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKN 618

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
           K   +V+ +   M +N ++ +  TY SL+  Y R    E   S+  E+K  GM+     Y
Sbjct: 619 KMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSY 678

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           NT++      G   EA  +F +MK S   +PD  T++  I          EA  +   ++
Sbjct: 679 NTVIYAYGRKGQMKEASRLFSEMKCS-GVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLV 737

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPDDR 333
             G  PN     S++Q Y +  R  +    L+ LP++  GI+  ++
Sbjct: 738 TQGCRPNERTFNSILQGYSRHGRMVEAKSFLSNLPKIYPGISKQEK 783


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 36/260 (13%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL++  +N     D   ++TLI         +    V+++MK++G  P+ +TYN LLD  
Sbjct: 90  GLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVY 149

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           G+++R  +   + +EM  NG SP+  TY SL+ AY R    ++ + +  +M E G+ L V
Sbjct: 150 GKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDV 209

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-------- 278
             Y TLL+     G  + A  +F +M+++  C+P+  TF+++I +   RGK         
Sbjct: 210 FTYTTLLSGFVRAGKDESAMRVFAEMRAA-GCKPNICTFNALIKMHGNRGKFAEMMKVFE 268

Query: 279 ---------------------------SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
                                      SE   +F EM  AGF P      +LI  Y +  
Sbjct: 269 EIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCG 328

Query: 312 RTDDVVRALNRLPELGITPD 331
             D  +    R+ E GITPD
Sbjct: 329 SFDQAMDIYKRMLEAGITPD 348



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 122/269 (45%), Gaps = 36/269 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG  E A  ++   R    + +   F+ LIK++G  G F   + V+EE+K     P++
Sbjct: 220 VRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDI 279

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+N LL   G+     +V  ++KEM   G  P  +TY +L+ AY R    +  + +Y+ 
Sbjct: 280 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKR 339

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS--- 273
           M E G+   ++ YN +LA  A  G  +++ +IF +MK    C+P+  T+ S++   +   
Sbjct: 340 MLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGR-CKPNELTYCSLLHAYANGK 398

Query: 274 ------------CRGKVS--------------------EAEAMFNEMLEAGFEPNLFVLT 301
                       C G +                     EAE  F E+   GF P+L  L 
Sbjct: 399 EIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLN 458

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +++  YG+ Q        LN + E G TP
Sbjct: 459 AMLSIYGRRQMFTKTNEILNFMNESGFTP 487



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 123/235 (52%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V +A  L +    + + +D  A+++LI    + G +   + V+++M+  G KP +I
Sbjct: 10  KEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLI 69

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +L+  G+   PW ++K +++ M + G+ P+  TY +L+    R    E+  +V+++
Sbjct: 70  TYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKD 129

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G       YN LL +      T EA E+  +M+ +  C P   T++S+I+  +  G
Sbjct: 130 MKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVN-GCSPSIVTYNSLISAYARDG 188

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + EA  + N+M+E G   ++F  T+L+  + +A + +  +R    +   G  P+
Sbjct: 189 LLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPN 243



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 1/183 (0%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           + E+K  G  P++ T N +L   GR +   +   I   M ++G +P+  TY SL+  + R
Sbjct: 442 FLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSR 501

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           +   E +  V +E+  KG++     YNT++      G   EA  IF +M+ S    PD  
Sbjct: 502 SENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRES-GLVPDVI 560

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+++ +   +      +A  +   M++ G +PN     S++  Y K    DD +  ++ L
Sbjct: 561 TYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSL 620

Query: 324 PEL 326
            EL
Sbjct: 621 HEL 623



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 117/271 (43%), Gaps = 38/271 (14%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+ + A  +Y R        D + ++ ++      G ++    ++ EMK    KPN 
Sbjct: 325 SRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNE 384

Query: 157 ITYNNLLDTMGRAKR-----------------PWQV--KTI----------------YKE 181
           +TY +LL      K                  P  V  KT+                + E
Sbjct: 385 LTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLE 444

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +   G SP+ +T  ++L  YGR +    T  +   M E G   S+  YN+L+ M +    
Sbjct: 445 LKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSEN 504

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVL 300
            + + E+ +++  ++  +PD+ +++++I    CR G++ EA  +F+EM E+G  P++   
Sbjct: 505 FERSEEVLKEI-LAKGIKPDTISYNTVI-FAYCRNGRMKEASRIFSEMRESGLVPDVITY 562

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + +  Y      +D +  +  + + G  P+
Sbjct: 563 NTFVASYAADSMFEDAIDVVRYMIKHGCKPN 593



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 2/226 (0%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + +I + G  G      ++  ++   G   ++  Y +L+       R  +   ++K+M +
Sbjct: 2   AVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTL-SVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            G  P   TY  +L  YG+     + +  ++  MK  G+      YNTL+  C      +
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHE 121

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +F+DMKS     PD  T+++++ +     +  EA  +  EM   G  P++    SL
Sbjct: 122 EAAAVFKDMKSM-GFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSL 180

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           I  Y +     + +   N++ E GI  D      LL+   +  K+E
Sbjct: 181 ISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDE 226



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 75/150 (50%), Gaps = 1/150 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D +  + ++ +YG    F     +   M   G  P++ TYN+L+    R++   + + + 
Sbjct: 453 DLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVL 512

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KE+   G+ P+  +Y +++ AY R    ++   ++ EM+E G+   V  YNT +A  A  
Sbjct: 513 KEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAAD 572

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
              ++A ++   M     C+P+  T++S++
Sbjct: 573 SMFEDAIDVVRYM-IKHGCKPNQNTYNSVV 601



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 65/123 (52%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++L+ ++  + NF+    V +E+ A G+KP+ I+YN ++    R  R  +   I+ EM 
Sbjct: 492 YNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMR 551

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           ++GL P+  TY + + +Y      ED + V R M + G + +   YN+++       + D
Sbjct: 552 ESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRD 611

Query: 244 EAF 246
           +A 
Sbjct: 612 DAI 614



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 46/100 (46%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  Y   G       ++ EM+  G+ P++ITYN  + +            + 
Sbjct: 523 DTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVV 582

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + M  +G  PN NTY S++  Y +  + +D +     + E
Sbjct: 583 RYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLHE 622


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 149/299 (49%), Gaps = 2/299 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G V+ A  ++  A+      DP  F T+I++Y  A   D  L+V + MK IG++PN 
Sbjct: 210 AKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNE 269

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y ++L+   RA +P     +++EM ++      +TY ++L  Y +A +      +  +
Sbjct: 270 LGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAK 329

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G + +V  Y+TL+ M   VG   EA  +F  MK  + C+ +   +++M+ +    G
Sbjct: 330 MRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMK-QQGCKGNLIVYNTMLDMYGKAG 388

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++++AE +  E+ ++   P+    T+LI  Y +  R ++ +R   +    G+  D     
Sbjct: 389 RINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVA 448

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
            ++NV  +  +  +L +L+E + KS  +    +   + E   +G   + A EL   I++
Sbjct: 449 IMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGGMCENAAELLRKINE 507



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 146/311 (46%), Gaps = 15/311 (4%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +IK     G F    + + +MK +G  P+++ YN L+   G+     Q    +
Sbjct: 58  DIKFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILILEYGKRGNFSQAMKYF 117

Query: 180 KEMTDNGLSPNWNTYASLL---RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++ D GL P+  TY ++L   R  G    G +TL   +EM+E G++     Y+ L+ M 
Sbjct: 118 SQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETL---KEMREAGIKPDQVAYSILIDMF 174

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  ++A   F +++ S    PDS  ++++I   +  G V +A  +F E   +    +
Sbjct: 175 GKAGRHEDAAATFRELQMS-GYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDD 233

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG--KLV 354
             +  ++IQ Y KA+  D  +  L  + E+G+ P++   G +LN   +   + +G  KL 
Sbjct: 234 PVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRA-NQPMGAIKLF 292

Query: 355 ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK----AYCNCLIDLCVN 410
           E +++SN + G    + +     +  F   A EL   + +   +    AY + LID+   
Sbjct: 293 EEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAY-STLIDMYGK 351

Query: 411 LNLLENACKLL 421
           +  L+ A +L 
Sbjct: 352 VGKLQEATRLF 362



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 36/265 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN   A   + + ++E    D   +  ++      GN D      +EM+  G+KP+ +
Sbjct: 106 KRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQV 165

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA----------------- 200
            Y+ L+D  G+A R       ++E+  +G  P+   Y +L+ A                 
Sbjct: 166 AYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEA 225

Query: 201 ------------------YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                             Y +AR  +  L V + MKE G+Q +   Y ++L         
Sbjct: 226 QRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQP 285

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A ++FE+M+ S NC+    T+ +M+ + S  G  S AE +  +M + GF  N+   ++
Sbjct: 286 MGAIKLFEEMQES-NCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYST 344

Query: 303 LIQCYGKAQRTDDVVRALNRLPELG 327
           LI  YGK  +  +  R  + + + G
Sbjct: 345 LIDMYGKVGKLQEATRLFSTMKQQG 369



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 1/196 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG    A  L  + R   +R +  A+STLI +YG  G       ++  MK  G K N+
Sbjct: 315 SKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNL 374

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I YN +LD  G+A R    + +  E+ D+ L P+  TY +L+ AY R    E+ + V+ +
Sbjct: 375 IVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQ 434

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            +  G++L   L   ++ +        +  E+ E M  S   QPD+    +++ I    G
Sbjct: 435 HRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKS-GIQPDTRILKTVVEIYEDGG 493

Query: 277 KVSEAEAMFNEMLEAG 292
               A  +  ++ E G
Sbjct: 494 MCENAAELLRKINELG 509



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A EI  D    +NC PD   ++ +I      G+   A+  F++M   G  P++ +   LI
Sbjct: 42  ALEILVDEMIGKNCPPDIKFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILI 101

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCL 338
             YGK       ++  ++L + G+ PD   +C  L
Sbjct: 102 LEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVL 136


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 134/258 (51%), Gaps = 3/258 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++E A GL++  +      D   ++++I  YG  G  D  +  +EEMK++  +P++I
Sbjct: 145 KEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVI 204

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   +  +  +    ++EM  +GL PN  +Y++L+ A+ +    +  L  Y +M
Sbjct: 205 TYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDM 264

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
           +  G+  +   Y +L+     +G   +AF + ++M S    + +  T++++I  +C    
Sbjct: 265 RRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEM-SQVGVEWNVVTYTALIDGLCDVE- 322

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ EAE +F +M+ AG  PNL   T+LI  + KA+  D  +  L+ +   GI PD    G
Sbjct: 323 RIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYG 382

Query: 337 CLLNVMTQTPKEELGKLV 354
             +  +    K E  K+V
Sbjct: 383 TFIWSLCGLEKIEAAKVV 400



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 112 ARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           ++ ++ R+ P   S   L+  +   G  DG    +++M   G KP + TYN ++D M + 
Sbjct: 87  SKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKE 146

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
                   +++EM   GL P+  TY S++  YG+    +DT+  + EMK    +  V  Y
Sbjct: 147 GDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITY 206

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           NTL+      G   +  E F +MK S   +P+  ++S+++        + +A   + +M 
Sbjct: 207 NTLINCFCKFGKLPKGLEFFREMKQS-GLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMR 265

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             G  PN    TSL+  Y K     D  R  + + ++G+
Sbjct: 266 RLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGV 304



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            F  L  +      F+  L  + +MK   V P   + N LL    R  +   +K  +K+M
Sbjct: 65  VFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDM 124

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G  P   TY  ++    +    E    ++ EMK +G+      YN+++     VG  
Sbjct: 125 IGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRL 184

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLT 301
           D+    FE+MKS  +C+PD  T++++I  C C+ GK+ +    F EM ++G +PN+   +
Sbjct: 185 DDTVYFFEEMKSM-SCEPDVITYNTLIN-CFCKFGKLPKGLEFFREMKQSGLKPNVVSYS 242

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           +L+  + K       ++    +  LG+ P++ 
Sbjct: 243 TLVDAFCKEDMMQQALKFYVDMRRLGLVPNEH 274



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 108/221 (48%), Gaps = 8/221 (3%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN  +++ LI  +  A N D  L + +EMK  G+KP+++ Y   + ++   ++    K
Sbjct: 339 VIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAK 398

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM + G+  N   Y +L+ AY ++    + L +  EM E  ++++   +  L+   
Sbjct: 399 VVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGL 458

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                  +A + F  + +    Q ++  +++MI       +V  A  +F +M + G  P+
Sbjct: 459 CKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPD 518

Query: 297 LFVLTSLIQCYGKAQRTDDVVRAL---NRLPELGITPDDRF 334
               TSLI   GK ++  +VV+AL   +++ E+G+    RF
Sbjct: 519 RTAYTSLID--GKLKQ-GNVVQALALRDKMAEIGVESGARF 556



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           T N   P +  + +L          E+ L  + +MK   +       N LL   A +G T
Sbjct: 55  TRNVCVPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKT 114

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLT 301
           D     F+DM  +   +P  +T++ MI  C C+ G +  A  +F EM   G  P+     
Sbjct: 115 DGMKRFFKDMIGA-GSKPTVFTYNIMID-CMCKEGDIEAASGLFEEMKFRGLIPDTVTYN 172

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           S+I  YGK  R DD V     +  +   PD
Sbjct: 173 SMIDGYGKVGRLDDTVYFFEEMKSMSCEPD 202


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R     +A  L D    E++ +D  A++T++  Y   G ++  + ++E+M+  G+ P ++
Sbjct: 186 RESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLV 245

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +LD  G+  R W ++  +  EM  NGL  +  T ++++ A GR    ++    +  
Sbjct: 246 TYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFAR 305

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K +G       YN+LL +    G   EA  I ++M+ + NC PD  T++ ++      G
Sbjct: 306 LKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKN-NCPPDLVTYNELVAAYVRAG 364

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              E     + M+  G  PN    T++I  YGKA + D  +    ++ E G  P+
Sbjct: 365 FHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 117/274 (42%), Gaps = 36/274 (13%)

Query: 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
            GL D  R+     D    ST+I   G  G  D     +  +K+ G      TYN+LL  
Sbjct: 265 LGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQV 324

Query: 166 MGRAKRPWQVKTIYKEMTDN-----------------------------------GLSPN 190
            G+A    +  +I KEM  N                                   G+ PN
Sbjct: 325 FGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPN 384

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY +++ AYG+A   +  LS +R+MKE G   +V  YN +L M       +E  ++  
Sbjct: 385 AITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLC 444

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           DM+S+  C P+S T+++M+ +C  +G       +F EM   GFEPN     +LI  YG+ 
Sbjct: 445 DMRSN-GCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRC 503

Query: 311 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
               DVV+    + + G TP       LLN + +
Sbjct: 504 GSQIDVVKMYEEMIKAGFTPCVTTYNALLNALAR 537



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 121/278 (43%), Gaps = 36/278 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A   + R ++E +      +++L++++G AG +   L++ +EM+     P+++
Sbjct: 292 REGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLV 351

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+    RA    +       M   G+ PN  TY +++ AYG+A   +  LS +R+M
Sbjct: 352 TYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQM 411

Query: 218 KEKGMQLSVTLYN-----------------------------------TLLAMCADVGYT 242
           KE G   +V  YN                                   T+LAMC + G  
Sbjct: 412 KESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMH 471

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                +F +MKS    +P+  TF+++I      G   +   M+ EM++AGF P +    +
Sbjct: 472 KYVNRVFREMKSC-GFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNA 530

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           L+    +    +     +  +   G  P++     +LN
Sbjct: 531 LLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLN 568



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 115/270 (42%), Gaps = 38/270 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  + A   + + +      +   ++ ++ + G     +  +++  +M++ G  PN +
Sbjct: 397 KAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSV 456

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N +L   G       V  +++EM   G  PN +T+ +L+ AYGR     D + +Y EM
Sbjct: 457 TWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEM 516

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG- 276
            + G    VT YN LL   A  G  + A  +  DMK S+  +P+  ++S M+  C  +G 
Sbjct: 517 IKAGFTPCVTTYNALLNALARRGDWEAAESVILDMK-SKGFKPNETSYSLMLN-CYAKGG 574

Query: 277 ------KVSE-----------------------------AEAMFNEMLEAGFEPNLFVLT 301
                 K+ E                              E  F E  + G++P+L +  
Sbjct: 575 NGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFN 634

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           S++  + K +  D     L  + E G+ PD
Sbjct: 635 SMLSIFAKNKMYDRAHEMLRLIRESGLQPD 664



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 104/207 (50%), Gaps = 1/207 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L+      G+++   +V  +MK+ G KPN  +Y+ +L+   +      ++ I +E+ 
Sbjct: 528 YNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIY 587

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  + P+W    +L+ A  + R        ++E  + G +  + L+N++L++ A     D
Sbjct: 588 NGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYD 647

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E+   ++ S   QPD  T++S++ + +  G+  + E +   + ++G +P+L    ++
Sbjct: 648 RAHEMLRLIRES-GLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTV 706

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           I+ + +     + +R L+ +   GI P
Sbjct: 707 IKGFCRQGLMQEAIRTLSEMTISGIRP 733



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++ D   F++++ ++     +D    +   ++  G++P+++TYN+L+D   R    W+ +
Sbjct: 626 YKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGE 685

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I K +  +G  P+  +Y ++++ + R    ++ +    EM   G++  +  YNT +A  
Sbjct: 686 EILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGY 745

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G   E  E+   M    +C+P+  T+  ++    C+GK
Sbjct: 746 SGKGMFSEVEEVISYM-IQHDCRPNELTY-KIVVDGYCKGK 784



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 90/195 (46%), Gaps = 1/195 (0%)

Query: 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           G    ++E    G KP+++ +N++L    + K   +   + + + ++GL P+  TY SL+
Sbjct: 613 GMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLM 672

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             Y R         + + +++ G +  +  YNT++      G   EA     +M  S   
Sbjct: 673 DMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTIS-GI 731

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           +P   T+++ +   S +G  SE E + + M++    PN      ++  Y K ++  + + 
Sbjct: 732 RPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMD 791

Query: 319 ALNRLPELGITPDDR 333
            ++ + E+  + DD+
Sbjct: 792 FVSNITEMDKSFDDQ 806



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 107/236 (45%), Gaps = 1/236 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G+ E A  +    +++ ++ +  ++S ++  Y   GN  G   + EE+    + P+ 
Sbjct: 536 ARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSW 595

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I    L+    + +    ++  ++E   +G  P+   + S+L  + + +  +    + R 
Sbjct: 596 ILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRL 655

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++E G+Q  +  YN+L+ M A  G   +  EI + ++ S   +PD  +++++I     +G
Sbjct: 656 IRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKS-GGKPDLVSYNTVIKGFCRQG 714

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            + EA    +EM  +G  P +    + +  Y       +V   ++ + +    P++
Sbjct: 715 LMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNE 770


>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
 gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
          Length = 638

 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 190/460 (41%), Gaps = 48/460 (10%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR G    A  +  + + +        +  L+ LYG  G FDG   ++ EM+   V P+ 
Sbjct: 102 TRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRT-AVPPDT 160

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN L    G      +V  ++ +M + G+ P+  T  +++ A GR    ED   V   
Sbjct: 161 ATYNVLFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVLEY 220

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +GM  +   Y  L+         +EA+  F +M +     P   T++++    +  G
Sbjct: 221 MTREGMVPTADAYTGLVEALGHAAMYEEAYVAF-NMMTEIGSLPTLETYNTLAFAYARGG 279

Query: 277 KVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
              EAEA+F+ M   AG + N     +LI+ Y +  + DD V+A   + +    PD+R  
Sbjct: 280 LFQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSL 339

Query: 336 GCLLNV-----MTQTPKEELGKLVECV--------------------------------- 357
             +LN      +    KE+  +L   V                                 
Sbjct: 340 EGVLNAYCIAGVIDESKEQFEELQSSVTLPSIIAYCMMLSLYARNDRWADAYDMLEEMKT 399

Query: 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLE 415
            +++S    +  L+  E D   +++     L NS  +  D    + N L+D+        
Sbjct: 400 NRASSTHQVIASLIKGEYDDSSNWQMVEYALENSTMEGCDYSLRFFNALLDVLWWFGQKG 459

Query: 416 NACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFP 475
            A ++L+  +   ++ ++   +   WSL +  +S+G AL A+ +W+N L   L   E+ P
Sbjct: 460 RAARVLDQAVQFGLFPELYRDTKLVWSLDVHRMSVGGALVAVSVWLNKLYDRLVEDEDLP 519

Query: 476 PLLGINTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 510
            L  +    G+ + S   +GL  A V  S L + L+A FH
Sbjct: 520 QLASVVVLRGEMEKSTITRGLPTAKVVYSFLNDTLSASFH 559



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 106/239 (44%), Gaps = 6/239 (2%)

Query: 104 MAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           M  GL+   R++     R D   ++TL+         D    +   M   GV P+ ++Y 
Sbjct: 1   MLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYR 60

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D    A    +V  ++ EM   G + + + Y  L+ A+ R     + ++V R+M+  
Sbjct: 61  YIVDAFASAGNLSRVAELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQAD 120

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   +   Y  LL +    G  D   E+F +M+++    PD+ T++ +  +    G   E
Sbjct: 121 GCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTA--VPPDTATYNVLFRVYGDGGFFKE 178

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCL 338
              +F++MLE G EP++    +++   G+    +D    L  +   G+ P  D + G +
Sbjct: 179 VVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLV 237


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/469 (21%), Positives = 199/469 (42%), Gaps = 54/469 (11%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G+++ A G++ + +      + N +S L+ L+G +G +D    ++ EMK+    P+ 
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN L++  G      +V T++ +M +  + P+  TY  ++ A G+    ED   + + 
Sbjct: 388 ATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQY 447

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M    +  S   Y  ++         +EA   F  M       P   T+ S++   +  G
Sbjct: 448 MTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEV-GSNPSIETYHSLLYSFARGG 506

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V E+EA+ + ++++G   N     + I+ Y +  + ++ V+    + +    PD+R   
Sbjct: 507 LVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLE 566

Query: 337 CLLNVMTQTPKEELGKLV-ECVEKSN---------SKLGYVVKL--------------LL 372
            +L+V +        +LV EC E+           S + Y + L              LL
Sbjct: 567 AVLSVYS------FARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELL 620

Query: 373 EE--------------QDIEGDFKKEAT--------ELFNSISKDVKKAYCNCLIDLCVN 410
           EE              Q I+GD+  ++         +  NS    +   + N L+D    
Sbjct: 621 EEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWW 680

Query: 411 LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 470
           L   E A ++L       ++ ++  ++   WS+ +  +S G   TAL +W+ND++  L +
Sbjct: 681 LGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDMNDMLLN 740

Query: 471 GEEFPPLLGINTGHGK-HKYSDKGLASVFESHLKELNAPFHDSPDKVGW 518
           GE+ P L  + +  G+  K S    +S+ ++    L      S    GW
Sbjct: 741 GEDLPQLAVVVSVRGQLEKSSAARESSIAKAAFSFLQDHVSSSFSFTGW 789



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNM 156
           R G  E +  L DR +N+K       ++T+I      G +++G L ++ EM+  G++P++
Sbjct: 188 RNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDI 247

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL          + + +++ M D G+ P+  TY+ L+  +G+ R  E    +  E
Sbjct: 248 VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSE 307

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G    +T YN LL   A  G   EA  +F  M+++  C P++ T+S ++ +    G
Sbjct: 308 MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSG 366

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  +   +F EM  +  +P+      LI+ +G+     +VV   + + E  I PD
Sbjct: 367 RYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPD 421



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 1/231 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E   GL+   R+E  + D   ++TL+      G  D    V+  M   G+ P++ TY++L
Sbjct: 229 EGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHL 288

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++T G+ +R  +V  +  EM   G  P+  +Y  LL AY ++   ++ + V+ +M+  G 
Sbjct: 289 VETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGC 348

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
             +   Y+ LL +    G  D+  ++F +MKSS N  PD+ T++ +I +    G   E  
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS-NTDPDAATYNILIEVFGEGGYFKEVV 407

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            +F++M+E   EP++     +I   GK    +D  + L  +    I P  +
Sbjct: 408 TLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSK 458



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 13/301 (4%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           K ++  N F+ + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 100 KNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDK 159

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
              ++ EM   G+S +  +Y +L+ AYGR    E +L +   MK   +  S+  YNT++ 
Sbjct: 160 CLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVIN 219

Query: 235 MCADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            CA  G   E    +F +M+  E  QPD  T++++++ C+ RG   EAE +F  M + G 
Sbjct: 220 ACARGGLDWEGLLGLFAEMR-HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGI 278

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELG 351
            P+L   + L++ +GK +R + V   L+ +   G  PD      LL    ++   KE +G
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338

Query: 352 -----KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 406
                +   C   +N+   Y V L L  Q    D  ++      S + D   A  N LI+
Sbjct: 339 VFHQMQAAGCTPNANT---YSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIE 395

Query: 407 L 407
           +
Sbjct: 396 V 396


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R     +A  L D    E++ +D  A++T++  Y   G ++  + ++E+M+  G+ P ++
Sbjct: 186 RESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLV 245

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +LD  G+  R W ++  +  EM  NGL  +  T ++++ A GR    ++    +  
Sbjct: 246 TYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFAR 305

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K +G       YN+LL +    G   EA  I ++M+ + NC PD  T++ ++      G
Sbjct: 306 LKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKN-NCPPDLVTYNELVAAYVRAG 364

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              E     + M+  G  PN    T++I  YGKA + D  +    ++ E G  P+
Sbjct: 365 FHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 117/274 (42%), Gaps = 36/274 (13%)

Query: 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
            GL D  R+     D    ST+I   G  G  D     +  +K+ G      TYN+LL  
Sbjct: 265 LGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQV 324

Query: 166 MGRAKRPWQVKTIYKEMTDN-----------------------------------GLSPN 190
            G+A    +  +I KEM  N                                   G+ PN
Sbjct: 325 FGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPN 384

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY +++ AYG+A   +  LS +R+MKE G   +V  YN +L M       +E  ++  
Sbjct: 385 AITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLC 444

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           DM+S+  C P+S T+++M+ +C  +G       +F EM   GFEPN     +LI  YG+ 
Sbjct: 445 DMRSN-GCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRC 503

Query: 311 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
               DVV+    + + G TP       LLN + +
Sbjct: 504 GSQIDVVKMYEEMIKAGFTPCVTTYNALLNALAR 537



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 121/278 (43%), Gaps = 36/278 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A   + R ++E +      +++L++++G AG +   L++ +EM+     P+++
Sbjct: 292 REGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLV 351

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+    RA    +       M   G+ PN  TY +++ AYG+A   +  LS +R+M
Sbjct: 352 TYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQM 411

Query: 218 KEKGMQLSVTLYN-----------------------------------TLLAMCADVGYT 242
           KE G   +V  YN                                   T+LAMC + G  
Sbjct: 412 KESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMH 471

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                +F +MKS    +P+  TF+++I      G   +   M+ EM++AGF P +    +
Sbjct: 472 KYVNRVFREMKSC-GFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNA 530

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           L+    +    +     +  +   G  P++     +LN
Sbjct: 531 LLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLN 568



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 115/270 (42%), Gaps = 38/270 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  + A   + + +      +   ++ ++ + G     +  +++  +M++ G  PN +
Sbjct: 397 KAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSV 456

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N +L   G       V  +++EM   G  PN +T+ +L+ AYGR     D + +Y EM
Sbjct: 457 TWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEM 516

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG- 276
            + G    VT YN LL   A  G  + A  +  DMK S+  +P+  ++S M+  C  +G 
Sbjct: 517 IKAGFTPCVTTYNALLNALARRGDWEAAESVILDMK-SKGFKPNETSYSLMLN-CYAKGG 574

Query: 277 ------KVSE-----------------------------AEAMFNEMLEAGFEPNLFVLT 301
                 K+ E                              E  F E  + G++P+L +  
Sbjct: 575 NGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFN 634

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           S++  + K +  D     L  + E G+ PD
Sbjct: 635 SMLSIFAKNKMYDRAHEMLRLIRESGLQPD 664



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 104/207 (50%), Gaps = 1/207 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L+      G+++   +V  +MK+ G KPN  +Y+ +L+   +      ++ I +E+ 
Sbjct: 528 YNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIY 587

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  + P+W    +L+ A  + R        ++E  + G +  + L+N++L++ A     D
Sbjct: 588 NGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYD 647

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E+   ++ S   QPD  T++S++ + +  G+  + E +   + ++G +P+L    ++
Sbjct: 648 RAHEMLRLIRES-GLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTV 706

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           I+ + +     + +R L+ +   GI P
Sbjct: 707 IKGFCRQGLMQEAIRTLSEMTISGIRP 733



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++ D   F++++ ++     +D    +   ++  G++P+++TYN+L+D   R    W+ +
Sbjct: 626 YKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGE 685

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I K +  +G  P+  +Y ++++ + R    ++ +    EM   G++  +  YNT +A  
Sbjct: 686 EILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGY 745

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G   E  E+   M    +C+P+  T+  ++    C+GK
Sbjct: 746 SGKGMFSEVEEVISYM-IQHDCRPNELTY-KIVVDGYCKGK 784



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 90/195 (46%), Gaps = 1/195 (0%)

Query: 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           G    ++E    G KP+++ +N++L    + K   +   + + + ++GL P+  TY SL+
Sbjct: 613 GMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLM 672

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             Y R         + + +++ G +  +  YNT++      G   EA     +M  S   
Sbjct: 673 DMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTIS-GI 731

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           +P   T+++ +   S +G  SE E + + M++    PN      ++  Y K ++  + + 
Sbjct: 732 RPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMD 791

Query: 319 ALNRLPELGITPDDR 333
            ++ + E+  + DD+
Sbjct: 792 FVSNITEMDKSFDDQ 806



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 107/236 (45%), Gaps = 1/236 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G+ E A  +    +++ ++ +  ++S ++  Y   GN  G   + EE+    + P+ 
Sbjct: 536 ARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSW 595

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I    L+    + +    ++  ++E   +G  P+   + S+L  + + +  +    + R 
Sbjct: 596 ILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRL 655

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++E G+Q  +  YN+L+ M A  G   +  EI + ++ S   +PD  +++++I     +G
Sbjct: 656 IRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGG-KPDLVSYNTVIKGFCRQG 714

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            + EA    +EM  +G  P +    + +  Y       +V   ++ + +    P++
Sbjct: 715 LMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNE 770


>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +  +I +Y  AGN++    V+  M   GV  + +TYN+L+      K   +V  IY
Sbjct: 246 DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIY 302

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M  + + P+  +YA L++AYGRAR  E+ LSV+ EM + G++ +   YN LL   A  
Sbjct: 303 DQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 362

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A  +F+ M+  +   PD W++++M++       +  AE  F  +   GFEPN+  
Sbjct: 363 GMVEQAKTVFKSMR-RDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +LI+ Y KA   + ++    ++   GI  +      +++
Sbjct: 422 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  LI  YG  GNF+G   V   +  +G  PN+I+Y  L+++ GR  +    +
Sbjct: 135 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 194

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
            I++ M  +G  P+  TY  +L+ +    + +  E+      + K+  ++    +Y+ ++
Sbjct: 195 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 254

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            M    G  ++A ++F  M   +     + T++S+++  +   +VS+   ++++M  +  
Sbjct: 255 YMYKKAGNYEKARKVFSSM-VGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDI 310

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
           +P++     LI+ YG+A+R ++ +     + + G+ P  +    LL+    +   E  K 
Sbjct: 311 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 370

Query: 354 V 354
           V
Sbjct: 371 V 371



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 114/272 (41%), Gaps = 38/272 (13%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    + D  +++ LIK YG A   +  L+V+EEM   GV+P    YN LLD   
Sbjct: 301 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 360

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            +    Q KT++K M  + + P+  +Y ++L AY  A   E     ++ +K  G + ++ 
Sbjct: 361 ISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIV 420

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y TL+   A     ++  E++E M+ S                                
Sbjct: 421 TYGTLIKGYAKANDVEKMMEVYEKMRLS-------------------------------- 448

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
               G + N  +LT+++   G+ +     +     +   G+ PD +    LL++   + +
Sbjct: 449 ----GIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSL--ASTQ 502

Query: 348 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
           +EL +  E     N     + ++   + D EG
Sbjct: 503 DELEEAKELTGIRNETATIIARVYGSDDDEEG 534



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 75/150 (50%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R ++   D  +++T++  Y  A + +G    ++ +K  G +PN++T
Sbjct: 362 SGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +A    ++  +Y++M  +G+  N     +++ A GR +     L  Y+EM+
Sbjct: 422 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEME 481

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
             G+       N LL++ +     +EA E+
Sbjct: 482 SCGVPPDQKAKNVLLSLASTQDELEEAKEL 511


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 130/265 (49%), Gaps = 5/265 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G +  A  +++  ++   +    A++ L+K Y  AG       +  EM+  GV P+  T
Sbjct: 304 SGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECT 363

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ L+D    A R    + + KEM  N + PN   ++ +L +Y      + +  V +EMK
Sbjct: 364 YSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMK 423

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G++     YN ++         D A + F+ M  SE  QPD+ T++++I  C C+ ++
Sbjct: 424 NSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKML-SEGIQPDTVTWNTLID-CHCKAEL 481

Query: 279 SE-AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            E AE +F EM+E GF P +     +I  +G+ +R DDV   +  +  LG+ P+      
Sbjct: 482 HERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTT 541

Query: 338 LLNVMTQTPKEELGKLVECVEKSNS 362
           L+++  ++ +      +EC+E   S
Sbjct: 542 LIDIYGKSGR--FSDAIECLEDMKS 564



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 120/238 (50%), Gaps = 2/238 (0%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           SY  R G  + +F +    +N   R D + ++ +I  +G     D  ++ +++M + G++
Sbjct: 405 SYRDR-GEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQ 463

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ +T+N L+D   +A+   + + +++EM + G SP   T+  ++ ++G     +D  ++
Sbjct: 464 PDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTL 523

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
              M+  G+  +V  Y TL+ +    G   +A E  EDMKS+   +P S  ++++I   +
Sbjct: 524 MGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSA-GLKPSSTMYNALINAYA 582

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +G   +A   F  M     +P+L  L SLI  +G+ +R  +    L  + E  + PD
Sbjct: 583 QKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPD 640



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 107/224 (47%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           LY   + +K  +D    + +I  +  AG+ +  +     ++A G+ P   T   ++  +G
Sbjct: 243 LYSEIQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALG 302

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            + R  + + I++EM DNGL P    Y  LL+ Y +A   +D   +  EM+  G+     
Sbjct: 303 DSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDEC 362

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y+ L+   ++ G  + A  + ++M+++ N  P+S+ FS ++     RG+  ++  +  E
Sbjct: 363 TYSLLIDAYSNAGRWESARIVLKEMEAN-NIMPNSYVFSRILASYRDRGEWQKSFQVLKE 421

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M  +G  P+      +I  +GK    D  +   +++   GI PD
Sbjct: 422 MKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPD 465



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 3/236 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   I PN+  FS ++  Y   G +     V +EMK  GV+P+   YN ++DT G+    
Sbjct: 388 EANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCL 447

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                 + +M   G+ P+  T+ +L+  + +A   E    ++ EM EKG    VT +N +
Sbjct: 448 DHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIM 507

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +    +    D+   +  +M+S     P+  T++++I I    G+ S+A     +M  AG
Sbjct: 508 INSFGEQERWDDVKTLMGNMRSL-GLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAG 566

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
            +P+  +  +LI  Y +   ++  V A   +    + P       L+N   +  ++
Sbjct: 567 LKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRD 622



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 89/173 (51%), Gaps = 1/173 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ +I  +G    +D    +   M+++G+ PN++TY  L+D  G++ R        ++M 
Sbjct: 504 FNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMK 563

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL P+   Y +L+ AY +    E  ++ +R M+   ++ S+   N+L+    +     
Sbjct: 564 SAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDA 623

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           EAF + + MK ++  +PD  T+++++       K ++  +++ EM+ AG  P+
Sbjct: 624 EAFSVLKYMKEND-LKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTPD 675



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 130/285 (45%), Gaps = 11/285 (3%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL--SVY 214
           +TYN L++   R     +   +   M  +G   ++  Y+ ++++  R+   +  +   +Y
Sbjct: 185 LTYNALINACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLY 244

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            E++   ++L V L N ++   A  G  ++A E F  M  +    P + T  ++I+    
Sbjct: 245 SEIQCDKLELDVQLSNDIIVGFAKAGDPNKAME-FLGMVQASGLSPRTATLIAVISALGD 303

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G++ EAEA+F EM + G +P       L++ Y KA    D    ++ +   G++PD+  
Sbjct: 304 SGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECT 363

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKL--GYVVKLLLEEQDIEGDFKKEATELFNSI 392
              L++  +   + E  ++V    ++N+ +   YV   +L      G+++K    L    
Sbjct: 364 YSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMK 423

Query: 393 SKDVK--KAYCNCLIDLCVNLNLLENAC----KLLELGLTLEVYT 431
           +  V+  + + N +ID     + L++A     K+L  G+  +  T
Sbjct: 424 NSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVT 468



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A   +   R +  +    A ++LI  +G         +V + MK   +KP+++TY
Sbjct: 585 GLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTY 644

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
             L+  + R  +  +V ++Y+EM   G +P+    A L  A    +Y + TL++
Sbjct: 645 TTLMKALIRVDKFNKVPSVYEEMILAGCTPDRKARAMLRSAL---KYMKQTLNL 695


>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
 gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
          Length = 526

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +  +I +Y  AGN++    V+  M   GV  + +TYN+L+      K   +V  IY
Sbjct: 189 DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIY 245

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M  + + P+  +YA L++AYGRAR  E+ LSV+ EM + G++ +   YN LL   A  
Sbjct: 246 DQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 305

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A  +F+ M+  +   PD W++++M++       +  AE  F  +   GFEPN+  
Sbjct: 306 GMVEQAKTVFKSMR-RDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 364

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +LI+ Y KA   + ++    ++   GI  +      +++
Sbjct: 365 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 405



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  LI  YG  GNF+G   V   +  +G  PN+I+Y  L+++ GR  +    +
Sbjct: 78  WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 137

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
            I++ M  +G  P+  TY  +L+ +    + +  E+      + K+  ++    +Y+ ++
Sbjct: 138 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 197

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            M    G  ++A ++F  M   +     + T++S+++  +   +VS+   ++++M  +  
Sbjct: 198 YMYKKAGNYEKARKVFSSM-VGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDI 253

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
           +P++     LI+ YG+A+R ++ +     + + G+ P  +    LL+    +   E  K 
Sbjct: 254 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 313

Query: 354 V 354
           V
Sbjct: 314 V 314



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 114/272 (41%), Gaps = 38/272 (13%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    + D  +++ LIK YG A   +  L+V+EEM   GV+P    YN LLD   
Sbjct: 244 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 303

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            +    Q KT++K M  + + P+  +Y ++L AY  A   E     ++ +K  G + ++ 
Sbjct: 304 ISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIV 363

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y TL+   A     ++  E++E M+ S                                
Sbjct: 364 TYGTLIKGYAKANDVEKMMEVYEKMRLS-------------------------------- 391

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
               G + N  +LT+++   G+ +     +     +   G+ PD +    LL++   + +
Sbjct: 392 ----GIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSL--ASTQ 445

Query: 348 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
           +EL +  E     N     + ++   + D EG
Sbjct: 446 DELEEAKELTGIRNETATIIARVYGSDDDEEG 477



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 75/150 (50%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R ++   D  +++T++  Y  A + +G    ++ +K  G +PN++T
Sbjct: 305 SGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 364

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +A    ++  +Y++M  +G+  N     +++ A GR +     L  Y+EM+
Sbjct: 365 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEME 424

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
             G+       N LL++ +     +EA E+
Sbjct: 425 SCGVPPDQKAKNVLLSLASTQDELEEAKEL 454


>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +  +I +Y  AGN++    V+  M   GV  + +TYN+L+      K   +V  IY
Sbjct: 253 DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIY 309

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M  + + P+  +YA L++AYGRAR  E+ LSV+ EM + G++ +   YN LL   A  
Sbjct: 310 DQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 369

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A  +F+ M+  +   PD W++++M++       +  AE  F  +   GFEPN+  
Sbjct: 370 GMVEQAKTVFKSMR-RDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 428

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +LI+ Y KA   + ++    ++   GI  +      +++
Sbjct: 429 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 469



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 115/241 (47%), Gaps = 7/241 (2%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  LI  YG  GNF+G   V   +  +G  PN+I+Y  L+++ GR  +    +
Sbjct: 142 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 201

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
            I++ M  +G  P+  TY  +L+ +    + +  E+      + K+  ++    +Y+ ++
Sbjct: 202 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 261

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            M    G  ++A ++F  M   +     + T++S+++  +   +VS+   ++++M  +  
Sbjct: 262 YMYKKAGNYEKARKVFSSM-VGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDI 317

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
           +P++     LI+ YG+A+R ++ +     + + G+ P  +    LL+    +   E  K 
Sbjct: 318 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 377

Query: 354 V 354
           V
Sbjct: 378 V 378



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 114/272 (41%), Gaps = 38/272 (13%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    + D  +++ LIK YG A   +  L+V+EEM   GV+P    YN LLD   
Sbjct: 308 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 367

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            +    Q KT++K M  + + P+  +Y ++L AY  A   E     ++ +K  G + ++ 
Sbjct: 368 ISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIV 427

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y TL+   A     ++  E++E M+ S                                
Sbjct: 428 TYGTLIKGYAKANDVEKMMEVYEKMRLS-------------------------------- 455

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
               G + N  +LT+++   G+ +     +     +   G+ PD +    LL++   + +
Sbjct: 456 ----GIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSL--ASTQ 509

Query: 348 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
           +EL +  E     N     + ++   + D EG
Sbjct: 510 DELEEAKELTGIRNETATIIARVYGSDDDEEG 541



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 75/150 (50%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R ++   D  +++T++  Y  A + +G    ++ +K  G +PN++T
Sbjct: 369 SGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 428

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +A    ++  +Y++M  +G+  N     +++ A GR +     L  Y+EM+
Sbjct: 429 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEME 488

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
             G+       N LL++ +     +EA E+
Sbjct: 489 SCGVPPDQKAKNVLLSLASTQDELEEAKEL 518


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 116/235 (49%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNM 156
           R G  E +  L DR +NEK       ++T+I      G +++G L ++ EM+  G++P++
Sbjct: 188 RNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDI 247

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL          + + +++ M D G+ P+  TY+ L+  +G+ R  E    +  E
Sbjct: 248 VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGE 307

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G    +T YN LL   A  G   EA  +F  M+++  C P++ T+S ++ +    G
Sbjct: 308 MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSG 366

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  +   +F EM  +  +P+      LI+ +G+     +VV   + + E  I PD
Sbjct: 367 RYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPD 421



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 186/436 (42%), Gaps = 54/436 (12%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G+++ A G++ + +      + N +S L+ L+G +G +D    ++ EMK+    P+ 
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN L++  G      +V T++ +M +  + P+  TY  ++ A G+    ED   + + 
Sbjct: 388 ATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQY 447

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M    +  S   Y  ++         +EA   F  M       P   TF S++   +  G
Sbjct: 448 MTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEV-GSNPSIETFHSLLYSFARGG 506

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V E+EA+ + ++++G   N     + I+ Y +  + ++ V+    + +    PD+R   
Sbjct: 507 LVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLE 566

Query: 337 CLLNVMTQTPKEELGKLV-ECVEKSN---------SKLGYVVKL--------------LL 372
            +L+V +        +LV EC E+           S + Y + L              LL
Sbjct: 567 AVLSVYS------FARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELL 620

Query: 373 EE--------------QDIEGDFKKEAT--------ELFNSISKDVKKAYCNCLIDLCVN 410
           EE              Q I+GD+  ++         +  NS    +   + N L+D    
Sbjct: 621 EEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWW 680

Query: 411 LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 470
           L   E A ++L       ++ ++  ++   WS+ +  +S G   TAL +W+ND++  L  
Sbjct: 681 LGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLK 740

Query: 471 GEEFPPLLGINTGHGK 486
           G + P L  + +  G+
Sbjct: 741 G-DLPQLAVVVSVRGQ 755



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 13/301 (4%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           K ++  N F+ + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 100 KNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDK 159

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
              ++ EM   G+S +  +Y +L+ AYGR    E +L +   MK + +  S+  YNT++ 
Sbjct: 160 CLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVIN 219

Query: 235 MCADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            CA  G   E    +F +M+  E  QPD  T++++++ C+ RG   EAE +F  M + G 
Sbjct: 220 ACARGGLDWEGLLGLFAEMR-HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGI 278

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELG 351
            P+L   + L++ +GK +R + V   L  +   G  PD      LL    ++   KE +G
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338

Query: 352 -----KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 406
                +   C   +N+   Y V L L  Q    D  ++      S + D   A  N LI+
Sbjct: 339 VFHQMQAAGCTPNANT---YSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIE 395

Query: 407 L 407
           +
Sbjct: 396 V 396



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 1/231 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E   GL+   R+E  + D   ++TL+      G  D    V+  M   G+ P++ TY++L
Sbjct: 229 EGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHL 288

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++T G+ +R  +V  +  EM   G  P+  +Y  LL AY ++   ++ + V+ +M+  G 
Sbjct: 289 VETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGC 348

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
             +   Y+ LL +    G  D+  ++F +MKSS N  PD+ T++ +I +    G   E  
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS-NTDPDAATYNILIEVFGEGGYFKEVV 407

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            +F++M+E   EP++     +I   GK    +D  + L  +    I P  +
Sbjct: 408 TLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSK 458


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 150/335 (44%), Gaps = 13/335 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  A  ++DR +    + D   + TLI ++  AG  D  L++Y++M+   + P+  
Sbjct: 435 RANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTF 494

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ +G+A        ++ EM D G  PN  TY  ++    +AR     L +YR+M
Sbjct: 495 TYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDM 554

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G Q     Y+ ++ +    G+ +EA  IF +MK  +N  PD   +  ++ +    G 
Sbjct: 555 QNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMK-RKNWVPDEPVYGLLVDLWGKVGN 613

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V ++   +  ML AG  PN+    SL+  + +  R  D    L  +  LG+ P  +    
Sbjct: 614 VEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTL 673

Query: 338 LLNVMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELF 389
           LL+  T+     ++G   E +  +    G+   + L      G       D   +  +L 
Sbjct: 674 LLSCCTEARSSFDMGFCGELMAVT----GHPAHMFLLSMPAAGPDGQNVRDHVSKFLDLM 729

Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 424
           +S  ++ K+   + ++D      L E A  + E+ 
Sbjct: 730 HSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVA 764



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 114/240 (47%), Gaps = 2/240 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V + F  Y   R   ++ D + ++T++ + G A  F     +  EM   G +PN++TYN 
Sbjct: 370 VALGF-FYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNR 428

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+ + GRA    +  +++  M + G  P+  TY +L+  + +A + +  L +Y++M+E  
Sbjct: 429 LIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAH 488

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +      Y+ ++      G+   A ++F +M   + C P+  T++ MI + +       A
Sbjct: 489 LSPDTFTYSVIINCLGKAGHLTSAHKLFCEM-VDQGCVPNLVTYNIMIALQAKARNYPTA 547

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             ++ +M  AGF+P+    + +++  G     ++       +      PD+   G L+++
Sbjct: 548 LELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDL 607



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 44/87 (50%)

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           + CQP+  T++ +I        ++EA ++F+ M EAG +P+     +LI  + KA   D 
Sbjct: 417 DGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDV 476

Query: 316 VVRALNRLPELGITPDDRFCGCLLNVM 342
            +    ++ E  ++PD      ++N +
Sbjct: 477 ALHMYQKMQEAHLSPDTFTYSVIINCL 503


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 4/239 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E++F L +  R   + +D   ++TLIK Y   GNF   L ++ EM   G+ P++ITY +L
Sbjct: 293 EVSFVLTEMNR-RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 351

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           + +M +A    +      +M   GL PN  TY +L+  + +  Y  +   V REM + G 
Sbjct: 352 IHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF 411

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEA 281
             SV  YN L+      G  ++A  + EDMK  +   PD  ++S++++   CR   V EA
Sbjct: 412 SPSVVTYNALINGHCVTGKMEDAIAVLEDMK-EKGLSPDVVSYSTVLS-GFCRSYDVDEA 469

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +  EM+E G +P+    +SLIQ + + +RT +       +  +G+ PD+     L+N
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 9/262 (3%)

Query: 86  RASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 139
           R   L E +Y+T      + GN   A  ++              +++LI     AGN + 
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNR 363

Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
            +   ++M+  G+ PN  TY  L+D   +     +   + +EM DNG SP+  TY +L+ 
Sbjct: 364 AMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN 423

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
            +      ED ++V  +MKEKG+   V  Y+T+L+        DEA  +  +M   +  +
Sbjct: 424 GHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM-VEKGIK 482

Query: 260 PDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           PD+ T+SS+I   C  R +  EA  ++ EML  G  P+ F  T+LI  Y      +  ++
Sbjct: 483 PDTITYSSLIQGFCEQR-RTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541

Query: 319 ALNRLPELGITPDDRFCGCLLN 340
             N + E G+ PD      L+N
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLIN 563



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AGN+++A  L+D+   +    +   ++TLI  Y      D    +   M   G++PN+I+
Sbjct: 218 AGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLIS 277

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +++ + R  R  +V  +  EM   G S +  TY +L++ Y +       L ++ EM 
Sbjct: 278 YNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEML 337

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G+  SV  Y +L+      G  + A E  + M+    C P+  T+++++   S +G +
Sbjct: 338 RHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC-PNERTYTTLVDGFSQKGYM 396

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +EA  +  EM + GF P++    +LI  +    + +D +  L  + E G++PD
Sbjct: 397 NEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+  A    D+ R      +   ++TL+  +   G  +    V  EM   G  P+++
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++      +      + ++M + GLSP+  +Y+++L  + R+   ++ L V REM
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG++     Y++L+    +   T EA +++E+M       PD +T++++I      G 
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV-GLPPDEFTYTALINAYCMEGD 535

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           + +A  + NEM+E G  P++   + LI    K  RT +  R L +L
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 37/259 (14%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYK 180
           + F  ++K Y      D  L++    +A G  P +++YN +LD   R+KR     + ++K
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM ++ +SPN  TY  L+R +  A   +  L+++ +M+ KG   +V  YNTL+     + 
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254

Query: 241 YTDEAFEIFEDMKSSENCQP-----------------------------------DSWTF 265
             D+ F++   M + +  +P                                   D  T+
Sbjct: 255 KIDDGFKLLRSM-ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           +++I      G   +A  M  EML  G  P++   TSLI    KA   +  +  L+++  
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373

Query: 326 LGITPDDRFCGCLLNVMTQ 344
            G+ P++R    L++  +Q
Sbjct: 374 RGLCPNERTYTTLVDGFSQ 392



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 56/281 (19%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  + +  + +    D  ++ST++  +  + + D  L V  EM   G+KP+ ITY
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           ++L+      +R  +   +Y+EM   GL P+  TY +L+ AY      E  L ++ EM E
Sbjct: 489 SSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVE 548

Query: 220 KGMQLSV-----------------------------------TLYNTLLAMCADV----- 239
           KG+   V                                     Y+TL+  C+++     
Sbjct: 549 KGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSV 608

Query: 240 ----------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEM 288
                     G   EA ++FE M   +N +PD   ++ MI    CR G + +A  ++ EM
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESM-LGKNHKPDGTAYNIMIH-GHCRAGDIRKAYTLYKEM 666

Query: 289 LEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPEL 326
           +++GF  +   + +L++     GK    + V+  + R  EL
Sbjct: 667 VKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCEL 707


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 129/256 (50%), Gaps = 2/256 (0%)

Query: 101  NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
            NVE+A+ L++  ++     D   +++LI  +G +G  +   ++Y+EM   G KPN ITYN
Sbjct: 805  NVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYN 864

Query: 161  NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
             ++  + ++ R  +   +Y  +     SP   T+  L+    ++   +D   ++  M   
Sbjct: 865  MVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHY 924

Query: 221  GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
            G + +  +YN L+     +G+ D A E F+ M   E  +PD  +++ ++ I    G+V +
Sbjct: 925  GCRPNSAIYNILVNGYGKLGHVDTACEFFKRM-VKEGIRPDLKSYTILVDILCIAGRVDD 983

Query: 281  AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLL 339
            A   F ++ +AG +P+L     +I   G++QRT++ +   + +   GI PD   +   +L
Sbjct: 984  ALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLIL 1043

Query: 340  NVMTQTPKEELGKLVE 355
            N+      EE GK+ E
Sbjct: 1044 NLGIVGMIEEAGKIYE 1059



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G  + A  +Y R  +E  +     FS L+   G   N    + + EEM+++G++PN+ 
Sbjct: 206 QSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIY 265

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY   +  +GR  +  +   I K M D+G  P+  TY  L+ A   AR  +D + ++ +M
Sbjct: 266 TYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKM 325

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K    +     Y TLL   +D G+ D+  +I+ +M+ ++   PD  TF+ ++      G+
Sbjct: 326 KSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEME-ADGYAPDVVTFTILVNALCKAGR 384

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           ++EA  + + M + G  PNL    +LI    +A R DD +   + +  LG+ P
Sbjct: 385 INEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEP 437



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 161/334 (48%), Gaps = 10/334 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  ++ A  L+ + ++   + D   + TL+  +   G+ D    ++ EM+A G  P+++T
Sbjct: 312 ARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVT 371

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +  L++ + +A R  +   +   M   G+ PN +TY +L+    RA   +D L ++  M+
Sbjct: 372 FTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNME 431

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G++ +   Y  L+      G+  +A E FE MK +    P+    ++ +   +  G++
Sbjct: 432 SLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMK-ARGIAPNIVACNASLYSLAEMGRL 490

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            EA+AMFNE+  +G  P+      +++CY K  + D+ ++ L+ + ++   PD      L
Sbjct: 491 GEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSL 550

Query: 339 LNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDV 396
           ++ + +  + EE  ++   +E+ N     V   +LL     EG  +K A +LF S++   
Sbjct: 551 IDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQK-AVQLFESMNGH- 608

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 430
                 C  +      LL+  CK  E+ L L+++
Sbjct: 609 -----GCSPNTITFNTLLDCLCKNDEVDLALKMF 637



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 118/255 (46%), Gaps = 3/255 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +  AF L D  R +    + + ++TLI     A   D  L+++  M+++GV+P   
Sbjct: 381 KAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAY 440

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT-YASLLRAYGRARYGEDTLSVYRE 216
           TY  L+D  G++  P +    +++M   G++PN     ASL       R GE   +++ E
Sbjct: 441 TYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAK-AMFNE 499

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K  G+      YN ++   + VG  DEA ++  +M S   C+PD    +S+I      G
Sbjct: 500 LKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEM-SKVQCEPDVIVINSLIDTLYKAG 558

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +V EA  MF  M E    P +     L+   GK  +    V+    +   G +P+     
Sbjct: 559 RVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFN 618

Query: 337 CLLNVMTQTPKEELG 351
            LL+ + +  + +L 
Sbjct: 619 TLLDCLCKNDEVDLA 633



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RA  ++ A  L+  +  E   ++P A++   LI  +G +G+    L  +E+MKA G+ PN
Sbjct: 416 RANRLDDALDLF--SNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPN 473

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++  N  L ++    R  + K ++ E+  +GL+P+  TY  +++ Y +    ++ + +  
Sbjct: 474 IVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLS 533

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM +   +  V + N+L+      G  +EA+++F  M+   N  P   T++ ++      
Sbjct: 534 EMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM-NLAPTVVTYNILLAGLGKE 592

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G++ +A  +F  M   G  PN     +L+ C  K    D  ++   ++  +   PD
Sbjct: 593 GQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPD 648



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 94/171 (54%), Gaps = 1/171 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G+V+ A   + R   E  R D  +++ L+ +   AG  D  L+ +E++K  G+ P+++
Sbjct: 942  KLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLV 1001

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             YN +++ +GR++R  +  +++ EM + G+ P+  TY SL+   G     E+   +Y E+
Sbjct: 1002 AYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEEL 1061

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            +  G++ +V  YN L+      G ++ A+ I++ M     C P++ TF+ +
Sbjct: 1062 QFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVG-GCDPNTGTFAQL 1111



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  A    ++ R   + ++  +++ LI     +G     L VY  M + G+KP++ T+
Sbjct: 173 GGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTF 232

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L+   G+ +    V  + +EM   GL PN  TY   +R  GR    ++   + + M +
Sbjct: 233 SALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDD 292

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G    V  Y  L+         D+A  +F  MKSS + +PD  T+ +++   S  G + 
Sbjct: 293 DGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSH-KPDKVTYVTLLDKFSDCGHLD 351

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + E ++ EM   G+ P++   T L+    KA R ++    L+ + + G+ P+
Sbjct: 352 KVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPN 403



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 7/247 (2%)

Query: 67   HGKTGSSPKSYIWVNPKSPRASKLKEKSYD------TRAGNVEMAFGLYDRARNEKWRID 120
            HGK+G   + +   +    R  K    +Y+       ++  ++ A  LY    +  +   
Sbjct: 835  HGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPT 894

Query: 121  PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
            P  F  LI     +G  D    +++ M   G +PN   YN L++  G+          +K
Sbjct: 895  PCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFK 954

Query: 181  EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
             M   G+ P+  +Y  L+     A   +D L  + ++K+ G+   +  YN ++       
Sbjct: 955  RMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQ 1014

Query: 241  YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             T+EA  +F +M+ +    PD +T++S+I      G + EA  ++ E+   G +PN+F  
Sbjct: 1015 RTEEALSLFHEMQ-NRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTY 1073

Query: 301  TSLIQCY 307
             +LI+ Y
Sbjct: 1074 NALIRGY 1080



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 105/199 (52%), Gaps = 1/199 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            ++G ++ A  ++D   +   R +   ++ L+  YG  G+ D     ++ M   G++P++ 
Sbjct: 907  KSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLK 966

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +Y  L+D +  A R       ++++   GL P+   Y  ++   GR++  E+ LS++ EM
Sbjct: 967  SYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEM 1026

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + +G+   +  YN+L+     VG  +EA +I+E+++     +P+ +T++++I   +  G 
Sbjct: 1027 QNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFI-GLKPNVFTYNALIRGYTLSGN 1085

Query: 278  VSEAEAMFNEMLEAGFEPN 296
               A  ++ +M+  G +PN
Sbjct: 1086 SELAYGIYKKMMVGGCDPN 1104



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 114/246 (46%), Gaps = 4/246 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           +MAF ++D  + +  R + + +  + K     G      +  E+M+  G   N  +YN L
Sbjct: 142 DMAF-VFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGL 200

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  + ++    +   +Y+ M   GL P+  T+++L+ A G+ R  +  + +  EM+  G+
Sbjct: 201 IHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGL 260

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEA 281
           + ++  Y   + +    G  DEA+ I + M   + C PD  T++ +I  +C+ R K+ +A
Sbjct: 261 RPNIYTYTICIRVLGRDGKIDEAYRIMKRM-DDDGCGPDVVTYTVLIDALCTAR-KLDDA 318

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             +F +M  +  +P+     +L+  +      D V +    +   G  PD      L+N 
Sbjct: 319 MCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNA 378

Query: 342 MTQTPK 347
           + +  +
Sbjct: 379 LCKAGR 384



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 88/217 (40%), Gaps = 37/217 (17%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           ++  + + K+    + ++ + T   G+ P    Y  L+  +      E   +++ EMK  
Sbjct: 760 IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI----------- 269
           G       YN+L+      G  +E F+++++M  +  C+P++ T++ +I           
Sbjct: 820 GCAPDTFTYNSLIDAHGKSGKINELFDLYDEM-LTRGCKPNTITYNMVISNLVKSNRLDK 878

Query: 270 ---------------TICSC---------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
                          T C+           G++ +A  MF+ M+  G  PN  +   L+ 
Sbjct: 879 AMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVN 938

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            YGK    D       R+ + GI PD +    L++++
Sbjct: 939 GYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDIL 975



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 37/222 (16%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G V+ A  L       +   D    ++LI     AG  +    ++  M+ + + P +
Sbjct: 520 SKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTV 579

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL  +G+  +  +   +++ M  +G SPN  T                       
Sbjct: 580 VTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTIT----------------------- 616

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
                       +NTLL         D A ++F  M ++ NC+PD  TF+++I     + 
Sbjct: 617 ------------FNTLLDCLCKNDEVDLALKMFYKM-TTMNCRPDVLTFNTIIHGFIKQN 663

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           ++  A  +F++M +    P+   L +L+    K+ + +D  R
Sbjct: 664 QIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAFR 704


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 130/257 (50%), Gaps = 1/257 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++E A GL++  +      D   ++++I  YG  G  D  +  +EEMK++  +P++I
Sbjct: 145 KEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVI 204

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L++   ++ +  +    Y+EM  +GL PN  +Y++L+ A+ +    +  +  Y +M
Sbjct: 205 TYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDM 264

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G   +   Y +L+     +G   +AF +  +M      + +  T++++I       +
Sbjct: 265 RRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEV-GVEWNVVTYTALIDGLCDAER 323

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EAE +F +M+ AG  PNL    +LI  + KA+  D  +  LN L   GI PD    G 
Sbjct: 324 MKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGT 383

Query: 338 LLNVMTQTPKEELGKLV 354
            +  +    K E  K+V
Sbjct: 384 FIWGLCGLEKIEAAKVV 400



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 3/219 (1%)

Query: 112 ARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           ++ +++R+ P   S   L+  +   G  DG    +++M   G KP + TYN ++D M + 
Sbjct: 87  SKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKE 146

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
                 + +++EM   GL P+  TY S++  YG+    +DT+  + EMK    +  V  Y
Sbjct: 147 GDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITY 206

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N+L+      G   +  E + +MK S   +P+  ++S+++        + +A   + +M 
Sbjct: 207 NSLINCFCKSGKLPKGLEFYREMKQS-GLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMR 265

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             G  PN F  TSL+    K     D  R  N + E+G+
Sbjct: 266 RVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGV 304



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           FS LI L    G  +     + +MK   V P   + N LL    +  +   VK  +K+M 
Sbjct: 70  FSVLIDL----GMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMI 125

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G  P   TY  ++    +    E    ++ EMK +G+      YN+++     VG  D
Sbjct: 126 GAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD 185

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           +    FE+MKS  +C+PD  T++S+I  C C+ GK+ +    + EM ++G +PN+   ++
Sbjct: 186 DTVYFFEEMKSM-SCEPDVITYNSLIN-CFCKSGKLPKGLEFYREMKQSGLKPNVVSYST 243

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           L+  + K       ++    +  +G  P++
Sbjct: 244 LVDAFCKEDMMQQAIKFYVDMRRVGHVPNE 273



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 2/215 (0%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN  +++ LI  +  A N D  L +  E+K  G++P+++ Y   +  +   ++    K
Sbjct: 339 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAK 398

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM +NG+  N   Y +L+ AY ++    + L +  EM+E   +++V  +  L+   
Sbjct: 399 VVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGL 458

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                  +A + F  M +    QP++  +++MI       +V  A  +F +M + G  P+
Sbjct: 459 CKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPD 518

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               TSL+    K     + +   +++ E+G+  D
Sbjct: 519 RTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLD 553


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 1/221 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L++++G AG +   LN+ +EM+      + +TYN L+    RA    +  T+   MT
Sbjct: 341 YNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMT 400

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ PN  TY +++ AYGRA      L ++ +MK+ G   +V  YN++LA+      ++
Sbjct: 401 RKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSE 460

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           E  +I  DM+ +  C P+  T+++++ +C  +GK      +F EM   GFEP      +L
Sbjct: 461 EMIKILSDMRIN-GCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTL 519

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           I  YG+     D  +  + + + G TP       LLN + +
Sbjct: 520 ISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALAR 560



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R     +A  L D+   +K+ +D  A +T++  Y   G +   + ++E MK  G+ P+++
Sbjct: 209 RESKYSIALKLLDKIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLV 268

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +LD  G+  R W ++  +  EM + GL  +  T ++++ A GR     +    + E
Sbjct: 269 TYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVE 328

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K  G +     YN LL +    G   EA  I ++M+ + NC  DS T++ ++      G
Sbjct: 329 LKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDN-NCTLDSVTYNELVAAYVRAG 387

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              E   + + M   G  PN    T++I  YG+A +    ++  N++ + G  P+
Sbjct: 388 FYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPN 442



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 5/200 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  +     +    +D   ++ L+  Y  AG ++    V + M   GV PN +
Sbjct: 350 KAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAV 409

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  +++  GRA +  +   ++ +M  +G  PN  TY S+L   G+    E+ + +  +M
Sbjct: 410 TYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDM 469

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICSCR 275
           +  G   +   +NTLLAMC D G       +F +MK   NC  +P   TF+++I+     
Sbjct: 470 RINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMK---NCGFEPGKDTFNTLISAYGRC 526

Query: 276 GKVSEAEAMFNEMLEAGFEP 295
           G   +A  M++EM++AGF P
Sbjct: 527 GSELDAAKMYDEMMKAGFTP 546



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 120/264 (45%), Gaps = 2/264 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A  L+++ +      +   +++++ L G     +  + +  +M+  G  PN I
Sbjct: 420 RAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRI 479

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G   +   V  +++EM + G  P  +T+ +L+ AYGR     D   +Y EM
Sbjct: 480 TWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEM 539

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G     T YN LL   A  G    A  +  DM+ ++  +P+  +FS M+   +  G 
Sbjct: 540 MKAGFTPCATTYNALLNALARRGDWKAAESVLLDMR-NKGFKPNETSFSLMLHCYAKGGN 598

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V   E +  ++ +    P+  +L +LI    K +    + RA   L + G  PD      
Sbjct: 599 VRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNS 658

Query: 338 LLNVMTQTPK-EELGKLVECVEKS 360
           +L++  +    E   K+++ + +S
Sbjct: 659 MLSIFAKNNMYERAQKMLDLIRES 682



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/258 (20%), Positives = 115/258 (44%), Gaps = 36/258 (13%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++   +N  +    + F+TLI  YG  G+      +Y+EM   G  P   TYN LL+ + 
Sbjct: 500 VFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALA 559

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-------GRARYGEDTLS-------- 212
           R       +++  +M + G  PN  +++ +L  Y       G  R G+D           
Sbjct: 560 RRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWV 619

Query: 213 --------------------VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
                                + E+ + G +  + ++N++L++ A     + A ++ + +
Sbjct: 620 LLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLI 679

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           + S   QPD  T++S++ + + RG+  +AE +   ++++G  P+L    ++I+ + +   
Sbjct: 680 RES-GLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGL 738

Query: 313 TDDVVRALNRLPELGITP 330
             + +R ++ +   GI P
Sbjct: 739 MQEAIRVMSEMTTRGICP 756



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 81/153 (52%), Gaps = 1/153 (0%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++ D   F++++ ++     ++    + + ++  G++P+++TYN+L++   R    W+ +
Sbjct: 649 YKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAE 708

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I K +  +G SP+  +Y ++++ + R    ++ + V  EM  +G+   +  YNT ++  
Sbjct: 709 EILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGY 768

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           A  G   E  E+   M   +NC+P+  T+  ++
Sbjct: 769 AGRGMFAEVDEVISYM-IQKNCKPNELTYKIIV 800



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 105/225 (46%), Gaps = 6/225 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G+ + A  +    RN+ ++ +  +FS ++  Y   GN  G   + +++    + P+ 
Sbjct: 559 ARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSW 618

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +    L+    + +    ++  ++E+  NG  P+   + S+L  + +    E    +   
Sbjct: 619 VLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDL 678

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCR 275
           ++E G+Q  +  YN+L+ M A  G   +A EI + + KS E+  PD  +++++I     +
Sbjct: 679 IRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGES--PDLVSYNTIIKGFCRQ 736

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVV 317
           G + EA  + +EM   G  P +F   + +  Y   G     D+V+
Sbjct: 737 GLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVI 781


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 1/247 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A   +   ++E ++     ++ L+ ++G AG F   L+V  EM+     P+ +
Sbjct: 305 REGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAV 364

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++    RA    +   +   M   G+ PN  TY +++ AYGR    +  L ++ +M
Sbjct: 365 TYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQM 424

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G   +V  YN +L M      ++E  +I   MK +  C P+  T+++M+ +C  +G 
Sbjct: 425 MELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLN-GCSPNHITWNTMLAMCGKKGM 483

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
                 +F EM   GFEP+     +LI  YG+    +D  +    + + G +P       
Sbjct: 484 HKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNA 543

Query: 338 LLNVMTQ 344
           LLN + +
Sbjct: 544 LLNALAR 550



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 123/253 (48%), Gaps = 3/253 (1%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L+D    + + +D  A++T++  Y   G +   + ++E M   G+ P+++TYN +L
Sbjct: 205 VASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVML 264

Query: 164 DTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           D  G+  R W ++  +  EM   GL  +  T +++L A GR    ++    +  +K +G 
Sbjct: 265 DVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGY 324

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +     YN LL +    G   EA  +  +M+ + NC PD+ T++ ++      G   E  
Sbjct: 325 KPGTVTYNALLHVFGKAGIFSEALSVLSEMEEN-NCPPDAVTYNEVVAAYVRAGFHEEGA 383

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            + + M   G  PN    T++I  YG+    D  +   +++ ELG  P+      +L ++
Sbjct: 384 VVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGML 443

Query: 343 -TQTPKEELGKLV 354
             ++  EE+ K++
Sbjct: 444 GKKSLSEEMMKIL 456



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 99/194 (51%), Gaps = 3/194 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PNA  ++T+I  YG  G+ D  L ++++M  +G  PN+ TYN +L  +G+     ++ 
Sbjct: 394 IMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMM 453

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I   M  NG SPN  T+ ++L   G+    +    V+REMK  G +     +NTL++  
Sbjct: 454 KILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAY 513

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  ++A ++ E+M  +    P   T+++++   + RG    AE++  +M   GF P+
Sbjct: 514 GRCGSNNDAAKMHEEMIKA-GFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPS 572

Query: 297 LFVLTSLIQCYGKA 310
               + ++  Y K 
Sbjct: 573 ETSYSLMVHSYAKG 586



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 7/215 (3%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++T++ + G  G       V+ EMK  G +P+  T+N L+   GR         +
Sbjct: 466 PNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKM 525

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++EM   G SP  NTY +LL A  R    +   SV  +M+ KG + S T Y+ ++   A 
Sbjct: 526 HEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAK 585

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS--CRGKVSEAEAMFNEMLEAGFEPN 296
            G   +  E+ E      +  P SW     + + +  CR  ++  E  F  + + G++P+
Sbjct: 586 GGNV-KGIEMIEKSIYDGDIFP-SWMLLRTLVLANFKCR-SLTGMERAFQALQKHGYKPD 642

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           L +  S++  + K    D     L  + + G+ PD
Sbjct: 643 LVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPD 677



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 106/229 (46%), Gaps = 9/229 (3%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE-EMKAIGVKPNMITYNN---LL 163
            +D ++ E  ++D     +L+K    +GN++  L ++E  +  +G+    I  +    ++
Sbjct: 138 FFDSSKYELLQVD---LISLLKALDYSGNWEKALLLFEWSVLNLGIANEKIDRHAIELMV 194

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
             +GR  +      ++  +  +    +   Y ++L AY R       + ++  M E G+ 
Sbjct: 195 RILGRESQHTVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLS 254

Query: 224 LSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            S+  YN +L +   +G + D+  E+ ++M+ S     D +T S++++ C   G + EA 
Sbjct: 255 PSLVTYNVMLDVYGKMGRSWDKILELLDEMR-SRGLDFDEFTCSTVLSACGREGLIDEAR 313

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             F+ +   G++P      +L+  +GKA    + +  L+ + E    PD
Sbjct: 314 EFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPD 362



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 112/258 (43%), Gaps = 36/258 (13%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++   +N  +  D + F+TLI  YG  G+ +    ++EEM   G  P + TYN LL+ + 
Sbjct: 490 VFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALA 549

Query: 168 R-----------------AKRPWQ------------------VKTIYKEMTDNGLSPNWN 192
           R                   RP +                  ++ I K + D  + P+W 
Sbjct: 550 RRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWM 609

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
              +L+ A  + R        ++ +++ G +  + L N++L++ A     D A E+   +
Sbjct: 610 LLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLI 669

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
             +   QPD  T +S++ + +  G   +AE +   +  +G +P+L    ++I+ + +   
Sbjct: 670 HDA-GLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGL 728

Query: 313 TDDVVRALNRLPELGITP 330
             + +R L+ +  +G+ P
Sbjct: 729 MQEGIRILSEMTSIGVGP 746



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 88/196 (44%), Gaps = 5/196 (2%)

Query: 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           G    ++ ++  G KP+++  N++L    +     +   + + + D GL P+  T+ SL+
Sbjct: 626 GMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLM 685

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             Y R         V R ++  G +  +  YNT++      G   E   I  +M +S   
Sbjct: 686 DMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEM-TSIGV 744

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            P  +T+++ I+  + +G  +E   + + M+     PN      +   Y KA+R D+ + 
Sbjct: 745 GPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRYDEAID 804

Query: 319 ALNRLPELGITPDDRF 334
            ++++ ++    DD F
Sbjct: 805 FVSKIKDV----DDTF 816



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/141 (19%), Positives = 70/141 (49%), Gaps = 1/141 (0%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           ++++ ++     +D    +   +   G++P+++T+N+L+D   R    W+ + + + +  
Sbjct: 647 NSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQT 706

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
           +G  P+  +Y ++++ + R    ++ + +  EM   G+   +  YNT ++  A  G   E
Sbjct: 707 SGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTE 766

Query: 245 AFEIFEDMKSSENCQPDSWTF 265
             ++   M    NC+P+  T+
Sbjct: 767 INDVISYM-IVHNCRPNELTY 786


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 128/270 (47%), Gaps = 14/270 (5%)

Query: 92  EKSYDTRAGNVEMAFGLY------DRARN-----EKWRIDPNA--FSTLIKLYGTAGNFD 138
           +K+Y  R     M   L+      D+AR      ++WR  P+   ++ +I  +G AG + 
Sbjct: 144 QKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWR 203

Query: 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
             +N+ ++M    + P+  TYNNL++  G +    +   + K+MT+NG+ P+  T+  +L
Sbjct: 204 WAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIIL 263

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN- 257
            A+         LS +  MK   ++   T  N ++     +   D+A EIF  M+  ++ 
Sbjct: 264 SAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSE 323

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           C PD  TF+S+I + S  G+V   EA FN M+  G +PN+    +LI  Y      ++  
Sbjct: 324 CTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAH 383

Query: 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK 347
              N + + G  PD      LLN   ++ K
Sbjct: 384 LFFNEIKQNGFRPDIVSYTSLLNAYGRSQK 413



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 36/267 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G VE     ++    E  + +  +++ LI  Y   G  +     + E+K  G +P++++Y
Sbjct: 342 GQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSY 401

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +LL+  GR+++P + + I+  M  N L PN  +Y +L+ AYG      D + + REM++
Sbjct: 402 TSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQ 461

Query: 220 KGMQ-----------------------------------LSVTLYNTLLAMCADVGYTDE 244
           +G+Q                                   L+   YN  +  C +VG  D+
Sbjct: 462 EGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDK 521

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +++ M+  +  + DS T++ +I+ C    K  EA +   E++      +  V +S I
Sbjct: 522 AIGLYKSMRKKK-IKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAI 580

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             Y K  +  +     N +   G  PD
Sbjct: 581 CAYSKQGQIVEAESTFNLMKSSGCYPD 607



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 4/177 (2%)

Query: 105 AFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           A  +++  R +K    P+   F+++I LY   G  + C   +  M A G+KPN+++YN L
Sbjct: 310 AIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNAL 369

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +          +    + E+  NG  P+  +Y SLL AYGR++       ++  MK   +
Sbjct: 370 IGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKL 429

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGKV 278
           + ++  YN L+      G   +A +I  +M+  E  QP+  +  +++  C  C  KV
Sbjct: 430 KPNLVSYNALIDAYGSNGLLADAIKILREME-QEGIQPNVVSICTLLAACGRCSRKV 485



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 1/232 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++DR +  K + +  +++ LI  YG+ G     + +  EM+  G++PN+++   LL   G
Sbjct: 420 IFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACG 479

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R  R  ++ T+       G+  N   Y + + +       +  + +Y+ M++K ++    
Sbjct: 480 RCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSV 539

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  L++ C  +    EA    E++   +        +SS I   S +G++ EAE+ FN 
Sbjct: 540 TYTVLISGCCKMSKYGEALSFMEEIMHLK-LPLSKEVYSSAICAYSKQGQIVEAESTFNL 598

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           M  +G  P++   T+++  Y  A+  +        +    I  D   C  L+
Sbjct: 599 MKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALM 650



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 102/253 (40%), Gaps = 17/253 (6%)

Query: 86  RASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 139
           R  KL   +Y+         G  + A GLY   R +K + D   ++ LI        +  
Sbjct: 497 RGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGE 556

Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
            L+  EE+  + +  +   Y++ +    +  +  + ++ +  M  +G  P+  TY ++L 
Sbjct: 557 ALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLD 616

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
           AY  A   E   +++ EM+   ++L       L+      G       + E M+  E   
Sbjct: 617 AYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPF 676

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS-----LIQCYGKAQRTD 314
            D+  F  M++ CS       A  M   +     EP+L V++S      +   GK+ + +
Sbjct: 677 SDT-IFFEMVSACSILQDWRTAVDMIKYI-----EPSLPVISSGCLNQFLHSLGKSGKIE 730

Query: 315 DVVRALNRLPELG 327
            +++   ++   G
Sbjct: 731 TMLKLFFKMLASG 743



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 93/208 (44%), Gaps = 1/208 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            +S+ I  Y   G      + +  MK+ G  P+++TY  +LD    A+   +   +++EM
Sbjct: 575 VYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEM 634

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             + +  +    A+L+R++ +       LS+   M+EK +  S T++  +++ C+ +   
Sbjct: 635 EASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDW 694

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A ++ + ++ S      S   +  +      GK+     +F +ML +G + NL   + 
Sbjct: 695 RTAVDMIKYIEPSLPV-ISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGADVNLNTYSI 753

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
           L++    +      +  L  + + GI P
Sbjct: 754 LLKNLLSSGNWRKYLEVLQWMEDAGIHP 781


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 131/266 (49%), Gaps = 4/266 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R     +A  L D+   +++ +D  A++T++  Y   G ++  ++++E MK +G  P ++
Sbjct: 187 RESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLV 246

Query: 158 TYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +LD  G+  R W+ +  +  EM   GL  +  T +++L A  R     +    + E
Sbjct: 247 TYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAE 306

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K  G +     YN LL +    G   EA  + ++M+ + +C  DS T++ ++      G
Sbjct: 307 LKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEEN-SCPADSVTYNELVAAYVRAG 365

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              EA  +   M + G  PN    T++I  YGKA + D+ ++    + E G  P+     
Sbjct: 366 FSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYN 425

Query: 337 CLLNVMTQTPKE-ELGKLVECVEKSN 361
            +L+++ +  +  E+ K++ C  KSN
Sbjct: 426 AVLSLLGKKSRSNEMIKML-CDMKSN 450



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 1/221 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L++++G AG +   L+V +EM+      + +TYN L+    RA    +   + + MT
Sbjct: 319 YNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMT 378

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ PN  TY +++ AYG+A   ++ L ++  MKE G   +   YN +L++      ++
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSN 438

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           E  ++  DMKS+  C P+  T+++M+ +C  +G       +F EM   GFEP+     +L
Sbjct: 439 EMIKMLCDMKSN-GCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTL 497

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           I  YG+     D  +    +   G          LLN + +
Sbjct: 498 ISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALAR 538



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 5/236 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            RAG  + A G+ +     K  + PNA  ++T+I  YG AG  D  L ++  MK  G  P
Sbjct: 362 VRAGFSKEAAGVIEMM--TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 419

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N  TYN +L  +G+  R  ++  +  +M  NG SPN  T+ ++L   G     +    V+
Sbjct: 420 NTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVF 479

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           REMK  G +     +NTL++     G   +A +++ +M +         T+++++   + 
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM-TRAGFNACVTTYNALLNALAR 538

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +G     E + ++M   GF+P     + ++QCY K      + R  NR+ E  I P
Sbjct: 539 KGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFP 594



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 1/190 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L+  Y  AG       V E M   GV PN ITY  ++D  G+A +  +   ++
Sbjct: 350 DSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLF 409

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M + G  PN  TY ++L   G+     + + +  +MK  G   +   +NT+LA+C + 
Sbjct: 410 YSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNK 469

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G       +F +MKS    +PD  TF+++I+     G   +A  M+ EM  AGF   +  
Sbjct: 470 GMDKFVNRVFREMKSC-GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTT 528

Query: 300 LTSLIQCYGK 309
             +L+    +
Sbjct: 529 YNALLNALAR 538



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 95/180 (52%), Gaps = 6/180 (3%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E AF L+   +   ++ D   F++++ ++     +D    + E ++  G+ P+++TYN+L
Sbjct: 616 ERAFTLF---KKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSL 672

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +D   R    W+ + I K +  + L P+  +Y ++++ + R    ++ + +  EM E+G+
Sbjct: 673 MDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGI 732

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEA 281
           +  +  YNT ++    +G   E  ++ E M +  +C+P+  TF  M+    CR GK SEA
Sbjct: 733 RPCIFTYNTFVSGYTAMGMFAEIEDVIECM-AKNDCRPNELTF-KMVVDGYCRAGKYSEA 790



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 99/207 (47%), Gaps = 1/207 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L+      G++    NV  +MK+ G KP   +Y+ +L    +      ++ I   + 
Sbjct: 529 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIK 588

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  + P+W    +LL A  + R    +   +   K+ G +  + ++N++L++       D
Sbjct: 589 EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 648

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  I E ++  +   PD  T++S++ +   RG+  +AE +   + ++  +P+L    ++
Sbjct: 649 QAEGILESIR-EDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTV 707

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           I+ + +     + VR L+ + E GI P
Sbjct: 708 IKGFCRRGLMQEAVRMLSEMTERGIRP 734



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 88/195 (45%), Gaps = 1/195 (0%)

Query: 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           G    +   K  G KP+M+ +N++L    R     Q + I + + ++GLSP+  TY SL+
Sbjct: 614 GSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLM 673

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             Y R         + + +++  ++  +  YNT++      G   EA  +  +M +    
Sbjct: 674 DMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM-TERGI 732

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           +P  +T+++ ++  +  G  +E E +   M +    PN      ++  Y +A +  + + 
Sbjct: 733 RPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMD 792

Query: 319 ALNRLPELGITPDDR 333
            ++++       DD+
Sbjct: 793 FVSKIKTFDPCFDDQ 807


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 150/329 (45%), Gaps = 16/329 (4%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 128
           K GS P +Y +   K    S +K       AGNV +A    D+        D   ++ ++
Sbjct: 42  KHGSKPNAYTY---KCVIQSLVK-------AGNVVLAMDFLDKMIKTGLEPDTLLYNVVL 91

Query: 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
              G A   D    ++  MK++G   +  TY  L+ ++GR KR  +   ++ EM + G +
Sbjct: 92  DGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCT 151

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           P+   Y +++  Y +A   E  + V ++M +K +       N+L+   +  G T+ A EI
Sbjct: 152 PSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEI 211

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           FE MK S     ++ +F++M+  C   GKV  A    +EM   G +PN     +LI C G
Sbjct: 212 FERMKKS-GVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLG 270

Query: 309 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC---VEKSNSKLG 365
           +A+   +  + L  +   G+TPD     C++    +     +GK  E    +EK+     
Sbjct: 271 RAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAG--NMGKAFEMFGDMEKAGCSAN 328

Query: 366 YVVKLLLEEQDIEGDFKKEATELFNSISK 394
            V   LL +  ++    ++A +++  + K
Sbjct: 329 VVTYNLLIDALVKAGRYQDARDIYFDMKK 357



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 1/214 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  +  +  ++    D    ++LI      G  +    ++E MK  GV  N +
Sbjct: 166 KAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTV 225

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           ++N +LD  G+A +         EM   G+ PN  T+ +L+   GRA+Y  +   V +EM
Sbjct: 226 SFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEM 285

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G+   V  Y  ++   A  G   +AFE+F DM+ +  C  +  T++ +I      G+
Sbjct: 286 RSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKA-GCSANVVTYNLLIDALVKAGR 344

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
             +A  ++ +M + G  P+    T L Q  GK +
Sbjct: 345 YQDARDIYFDMKKKGILPDAITATVLQQLAGKCK 378



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 88/168 (52%), Gaps = 1/168 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  E+A  +++R +     ++  +F+ ++   G AG         +EM+A G+KPN 
Sbjct: 200 SRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNS 259

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           IT+N L++ +GRAK   +   + +EM   GL+P+  TY  ++ A+ +A        ++ +
Sbjct: 260 ITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGD 319

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
           M++ G   +V  YN L+      G   +A +I+ DMK  +   PD+ T
Sbjct: 320 MEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMK-KKGILPDAIT 366



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 109/215 (50%), Gaps = 4/215 (1%)

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++  N ++   GR+ R  +V   ++E+  +G  PN  TY  ++++  +A      +   
Sbjct: 13  HVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFL 72

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICS 273
            +M + G++    LYN +L         DEA ++F  MKS   C  D +T++ +I ++  
Sbjct: 73  DKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSM-GCPADDYTYAILIRSLGR 131

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           C+ +  EA  +F+EM E G  P+    T++I  Y KA R +  +  L ++ +  + PDD 
Sbjct: 132 CK-RDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDY 190

Query: 334 FCGCLLNVMTQTPKEELG-KLVECVEKSNSKLGYV 367
               L+  +++T + EL  ++ E ++KS   +  V
Sbjct: 191 TLNSLITAVSRTGRTELACEIFERMKKSGVAVNTV 225


>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 862

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 192/461 (41%), Gaps = 50/461 (10%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR G    A  +  + + +        +  L+ LYG  G FDG   ++ EM+   V P+ 
Sbjct: 326 TRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRT-AVPPDT 384

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN L    G      +V  ++ +M   G+ P+  T   +L A G+    ED   V   
Sbjct: 385 ATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDY 444

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           + ++GM  +   Y  L+         +EA+  F +M +     P   T++S+  + +  G
Sbjct: 445 ITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAF-NMMTEIGSLPTIETYNSLANVFAKGG 503

Query: 277 KVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
              EAE++F+ M   AG + N     +LI+ Y +  + DD V+A   + +    PD+R  
Sbjct: 504 LFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSL 563

Query: 336 GCLLNV-----MTQTPKEELGKLVECVEKSNSKLGYVVKL--------------LLEEQD 376
             +LN      +    KE+  + ++      S + Y + L              LLEE  
Sbjct: 564 EGVLNAYCIAGVIDESKEQFEE-IQSNMAVPSIIAYCMMLSLYARNDRWADAYDLLEEMK 622

Query: 377 --------------IEGDFKKE--------ATELFNSISKDVKKAYCNCLIDLCVNLNLL 414
                         I+G++           A +  N    D    + N L+D+       
Sbjct: 623 TNRASSTHQVIASMIQGEYDDSSNWQMVEYALDSSNLEGCDYSLRFFNALLDVLWWFGQK 682

Query: 415 ENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 474
             A ++L+  +   ++ ++   +   WSL +  +S+G AL A+ +W+N L   L+  ++ 
Sbjct: 683 ARAARVLDHAVNSGLFPELSRDTKLVWSLDVHRMSVGGALVAVSVWLNKLYARLKGEKDL 742

Query: 475 PPLLGINTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 510
           P L  +    GK + S   +GL  A V  S L + L++ FH
Sbjct: 743 PQLASVVVLRGKMEKSTITRGLPIAKVVYSFLNDTLSSSFH 783



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 108/231 (46%), Gaps = 5/231 (2%)

Query: 103 EMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           +M  GL+   R++     R D   ++TL+         D    +   M   GV P+  +Y
Sbjct: 224 DMLLGLFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASY 283

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +++D   RA    +V  +++EM D G +P+ + Y  L+ A+ R     + ++V R+M+ 
Sbjct: 284 RHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQA 343

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +   Y  LL +    G  D   E+F +M+++    PD+ T++ + ++    G   
Sbjct: 344 DGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTA--VPPDTATYNVLFSVFGDGGFFK 401

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           E   +F++ML  G EP++     ++   G+    +D    L+ + + G+ P
Sbjct: 402 EVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKEGMVP 452



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 44/259 (16%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW--------- 173
           ++++LI  Y      +    + ++MKA GV P   TYN +L    RA  P          
Sbjct: 170 SYTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDMLLGL 229

Query: 174 ---------------------------------QVKTIYKEMTDNGLSPNWNTYASLLRA 200
                                            Q + + + M + G+ P+  +Y  ++ A
Sbjct: 230 FAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDA 289

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           + RA        ++REM + G     + Y  L+     VG T EA  +   M+ ++ C P
Sbjct: 290 FARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQ-ADGCAP 348

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
            + T+  ++ +   +G+      +F EM  A   P+      L   +G      +VV   
Sbjct: 349 TAATYRVLLDLYGRQGRFDGVRELFREMRTA-VPPDTATYNVLFSVFGDGGFFKEVVELF 407

Query: 321 NRLPELGITPDDRFCGCLL 339
           + +   GI PD   C  +L
Sbjct: 408 HDMLRTGIEPDMETCEGVL 426


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 172/383 (44%), Gaps = 24/383 (6%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 128
           K GS P +Y +   K    S +K       AGNV +A  L D+        D    + ++
Sbjct: 42  KHGSKPNAYTY---KCVIQSLVK-------AGNVVLAMELLDKMIKTGLEPDTLLCNVVL 91

Query: 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
              G A   D    ++  MK++G   +  TY  L+ ++GR KR  +   ++ EM + G +
Sbjct: 92  DGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCT 151

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           P+   Y +++  Y +A   E  + V ++M +K +       N+L+   +  G T+ A EI
Sbjct: 152 PSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEI 211

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           FE MK S     ++ +F++M+  C   GKV  A    +EM   G +PN     +LI C G
Sbjct: 212 FERMKKS-GVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLG 270

Query: 309 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC---VEKSNSKLG 365
           +A+   +  + L  +   G+TPD     C++    +     +GK  E    +EK+     
Sbjct: 271 RAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAG--NMGKAFEMFGDMEKAGCSAN 328

Query: 366 YVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGL 425
            V   LL +  ++    ++A +++  +    KK      I   V L  L   CKL   G+
Sbjct: 329 VVTYNLLIDALVKAGRYQDARDIYFDMK---KKGILPDAITATV-LQQLAGKCKL--SGI 382

Query: 426 TLEVYTDIQSRSPTQWSLHLKSL 448
           +L+   + Q  SP+   L  KSL
Sbjct: 383 SLD--ENEQRPSPSSPVLEKKSL 403



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 109/215 (50%), Gaps = 4/215 (1%)

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++  N ++   GR+ R  +V   ++E+  +G  PN  TY  ++++  +A      + + 
Sbjct: 13  HVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELL 72

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICS 273
            +M + G++    L N +L         DEA ++F  MKS   C  D +T++ +I ++  
Sbjct: 73  DKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSM-GCPADDYTYAILIRSLGR 131

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           C+ +  EA  +F+EM E G  P+    T++I  Y KA R +  +  L ++ +  + PDD 
Sbjct: 132 CK-RDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDY 190

Query: 334 FCGCLLNVMTQTPKEELG-KLVECVEKSNSKLGYV 367
               L+  +++T + EL  ++ E ++KS   +  V
Sbjct: 191 TLNSLITAVSRTGRTELACEIFERMKKSGVAVNTV 225


>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
           10D]
          Length = 805

 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 147/325 (45%), Gaps = 24/325 (7%)

Query: 95  YDTRAGNVEMAFGLYDRA-RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           Y  RAG ++ A  L  +  +N   + D   + T++ +     +      V + M+  G++
Sbjct: 477 YVGRAGRIDAALDLLGQMEQNRNVQPDIVTYGTILDICAKKQDVSLAYAVLDRMRKRGMR 536

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN   Y +L+D   RA  P Q +++++++   GL  +     +LL A+ RA+  E     
Sbjct: 537 PNNFCYASLIDACARAGLPDQAESLFRQLRAEGLEYDLFICNALLGAFARAKMVERAFQA 596

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + EM+  G++     +NTL+   A     D+A++ FE MK S N   D+ T++++I  CS
Sbjct: 597 FEEMRSAGVRGDRITFNTLITAAARAREFDKAWKAFETMKKS-NISADATTYNALIDACS 655

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G    A A+FNEM +A  +P +F   +LI    K Q      + L  +   G+ PD  
Sbjct: 656 KSGMTELAFALFNEMRQAHLQPTIFTFNALIGACTKLQDMRRATQVLMLMHGFGVYPDT- 714

Query: 334 FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
                LN++          L  C    N    Y + L+ E    E +++     L +SI 
Sbjct: 715 ---FTLNIL----------LTACAR--NEDFDYAISLVRE---FETNYRVRLDRLGSSIV 756

Query: 394 KDVKKAYCNCLI-DLCVNLNLLENA 417
            ++    C+    D C  L LLE A
Sbjct: 757 TNLCIKACDSQSRDRC--LRLLEAA 779



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           ++ ++ +Y+ L+  +G+     Q   ++ +M  NG++PN  T+++L  A     + +  +
Sbjct: 393 IEIDVASYSILISCLGKCGASAQAIEMFHKMIRNGVAPNAFTFSALFGALTDGAFFDQAM 452

Query: 212 SVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
            +++ ++     +L+V +YN +L      G  D A ++   M+ + N QPD  T+ +++ 
Sbjct: 453 RLFQMIRASYPNELNVVVYNAVLKYVGRAGRIDAALDLLGQMEQNRNVQPDIVTYGTILD 512

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           IC+ +  VS A A+ + M + G  PN F   SLI    +A   D       +L   G+  
Sbjct: 513 ICAKKQDVSLAYAVLDRMRKRGMRPNNFCYASLIDACARAGLPDQAESLFRQLRAEGLEY 572

Query: 331 DDRFCGCLLNVMTQTPKEELGKLVE 355
           D   C  LL    +       K+VE
Sbjct: 573 DLFICNALLGAFAR------AKMVE 591


>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
 gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 609

 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 124/240 (51%), Gaps = 7/240 (2%)

Query: 105 AFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           A  +++   NEK   ++ D   F  +I +Y  AG++     ++ +M   G+  + +T+N+
Sbjct: 231 AEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNS 290

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+      K   +V +IY +M    L P+  +Y+ L++AYG+AR  E+ L+V+ EM + G
Sbjct: 291 LMSFETNYK---EVSSIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAG 347

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +   YN L+   A  G  +EA  +F+ M+     +PD  ++++M+        +  A
Sbjct: 348 VRPTRKSYNILIDAFAISGLVEEAHTVFKAMR-RHRVEPDLCSYTTMVLAYVNASDMDGA 406

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           E  F  + E G +PN+ V  +L++ Y K    + V+R   R+   G+ P+      +++V
Sbjct: 407 EKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDV 466



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 113/229 (49%), Gaps = 9/229 (3%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  L+  YG  G+F     V + M   G KP++I+   L++  GRAK+  + +
Sbjct: 138 WNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAE 197

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVTLYNTLL 233
            +++ M  +G  P+  TY  +L+++      ++  +++ ++   K    +    +++ ++
Sbjct: 198 AVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMI 257

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            M    G   +A ++F  M  SE   P  + TF+S+++  +   +VS   +++++M    
Sbjct: 258 YMYKKAGDYAQARKLFAQM--SERGIPLSTVTFNSLMSFETNYKEVS---SIYDQMQRTA 312

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
            +P++   + LI+ YGKA+R ++ +     + + G+ P  +    L++ 
Sbjct: 313 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDA 361



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 92/186 (49%), Gaps = 1/186 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    + D  ++S LIK YG A   +  L V+EEM   GV+P   +YN L+D   
Sbjct: 304 IYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFA 363

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            +    +  T++K M  + + P+  +Y +++ AY  A   +     +R +KE G++ +V 
Sbjct: 364 ISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVV 423

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +Y TL+   + +   +    ++E M+  +  +P+   +++++ +         A   F E
Sbjct: 424 VYGTLMKGYSKLNNVERVMRVYERMR-MQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKE 482

Query: 288 MLEAGF 293
           M   G+
Sbjct: 483 MEARGY 488



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 119/252 (47%), Gaps = 5/252 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG+   A  L+ +       +    F++L+       N+    ++Y++M+   +KP+++
Sbjct: 262 KAGDYAQARKLFAQMSERGIPLSTVTFNSLMSF---ETNYKEVSSIYDQMQRTALKPDVV 318

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+ L+   G+A+R  +   +++EM D G+ P   +Y  L+ A+  +   E+  +V++ M
Sbjct: 319 SYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAM 378

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +   ++  +  Y T++    +    D A + F  +K  +  +P+   + +++   S    
Sbjct: 379 RRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIK-EDGLKPNVVVYGTLMKGYSKLNN 437

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V     ++  M   G EPN  + T+++  +G+     + V     +   G   D +    
Sbjct: 438 VERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNI 497

Query: 338 LLNVMTQTPKEE 349
           LL+ + +TP+E+
Sbjct: 498 LLS-LAKTPEEQ 508



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 86/194 (44%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R  +   D  +++T++  Y  A + DG    +  +K  G+KPN++ 
Sbjct: 365 SGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVV 424

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +     +V  +Y+ M   G+ PN   Y +++  +GR     + +  ++EM+
Sbjct: 425 YGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEME 484

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            +G        N LL++       +EA E+  +       +PD  T+   I       K 
Sbjct: 485 ARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQLEAKPDGTTYGLEINGTGNEYKH 544

Query: 279 SEAEAMFNEMLEAG 292
            + +A  + +L+  
Sbjct: 545 GQNDAGHDSLLDGA 558


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 131/269 (48%), Gaps = 7/269 (2%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           ++   F  +++ Y  A   D  +  +  M+  GV PN+  +N+LL  + ++K   + + I
Sbjct: 133 VNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEI 192

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M ++  SP+  TY+ LL  +GRA        VY EM + G +  +  Y  ++     
Sbjct: 193 FDKM-NSRFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCK 251

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  +EA  + +DM +S  CQP ++ +S ++       ++ +A A F +M + G  P++ 
Sbjct: 252 TGRVEEAVRVVQDM-TSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIV 310

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKL 353
           V  +L+  + KA++ ++  R LN +   GIT + R    +LN +    +++       ++
Sbjct: 311 VYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRM 370

Query: 354 VECVEKSNSKLGYVVKLLLEEQDIEGDFK 382
           ++C +        ++K+  E   +E   K
Sbjct: 371 IKCCQPDCDTYTMMIKMFCENDKVEMALK 399



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 128/299 (42%), Gaps = 40/299 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++ NV  A  ++D+  N ++  D   +S L++ +G A N      VY EM   G +P+++
Sbjct: 182 KSKNVRKAQEIFDKM-NSRFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIV 240

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D++ +  R  +   + ++MT  G  P    Y+ L+  YG     ED ++ + +M
Sbjct: 241 TYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDM 300

Query: 218 KEKGMQLSVTLYNTLL-AMC----------------------------------ADVGYT 242
           ++ G+   + +YN L+ A C                                    +G  
Sbjct: 301 EKDGIVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRD 360

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           DEA+++F  M     CQPD  T++ MI +     KV  A  ++  M    F P++   + 
Sbjct: 361 DEAYKVFRRMIKC--CQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSV 418

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           LI      +        L  + E GI P     G L  ++ +  ++++   +  VEK N
Sbjct: 419 LINGLCDKREVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFL--VEKMN 475


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 5/260 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A  +++  R+   +    A++ L++ Y  AG       V  EM+  GV PN  TY
Sbjct: 320 GRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTY 379

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L+D  G A+R    + + KEM  + + PN   ++ +L +Y      + T  V REM++
Sbjct: 380 SLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMED 439

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKV 278
            G++     YN L+         D A   F+ M  SE  +PD+ T+++++  C C+ GK 
Sbjct: 440 SGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRML-SEGIEPDTITWNTLVD-CHCKAGKH 497

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
             AE +F EM+E G+ P       +I  +G  +R DDV   L  +   G+ P+      L
Sbjct: 498 DRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTL 557

Query: 339 LNVMTQTPKEELGKLVECVE 358
           +++  ++ +      +EC++
Sbjct: 558 IDIYGKSGR--FDDAIECLD 575



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 115/232 (49%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  +  F +     +   R D   ++ LI  +G     D  +  ++ M + G++P+ IT+
Sbjct: 425 GEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITW 484

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   +A +  + + +++EM + G  P   T+  ++ ++G     +D  ++   M+ 
Sbjct: 485 NTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRS 544

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+  +   Y TL+ +    G  D+A E  +DMK++   +P S  +++++   + RG   
Sbjct: 545 QGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAA-GLKPSSTMYNALLNAYAQRGLSD 603

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +A + F  M + G +P+L  L SLI  +GK +R  +    L  + E  + PD
Sbjct: 604 QAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPD 655



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 114/247 (46%), Gaps = 4/247 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A   +DR  +E    D   ++TL+  +  AG  D    ++EEM   G  P   T+N 
Sbjct: 462 LDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNI 521

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++++ G  +R   VK +   M   GL PN  TY +L+  YG++   +D +    +MK  G
Sbjct: 522 MINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAG 581

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ S T+YN LL   A  G +D+A   F  M+  +  +P     +S+I       +  EA
Sbjct: 582 LKPSSTMYNALLNAYAQRGLSDQAVSAFWAMR-DDGLKPSLLALNSLINAFGKDRRDVEA 640

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL--- 338
             +   M E   +P++   T+L++     ++ D V      +   G TPD +    L   
Sbjct: 641 FVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTPDRKARAMLRSA 700

Query: 339 LNVMTQT 345
           L  M QT
Sbjct: 701 LKYMKQT 707



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 5/249 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG+++ A       +     +      T+I   G  G  +    ++EEM+  G++P  
Sbjct: 282 AKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRT 341

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN LL    +A      + +  EM  +G+ PN  TY+ L+ AYG A   E    V +E
Sbjct: 342 RAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKE 401

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+   +Q +  +++ +LA   D G   + F++  +M+ S   +PD   ++ +I       
Sbjct: 402 MEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDS-GVRPDRIFYNVLIDTFGKFN 460

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +  A A F+ ML  G EP+     +L+ C+ KA + D        + E G  P    C 
Sbjct: 461 CLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLP----CN 516

Query: 337 CLLNVMTQT 345
              N+M  +
Sbjct: 517 TTFNIMINS 525



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +Y     +K  +D   ++ +I  +  AG+ D  L     ++  G+     T   ++  +G
Sbjct: 258 IYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLG 317

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
              R  + + I++EM DNGL P    Y +LLR Y +A    D   V  EM+  G+  +  
Sbjct: 318 NCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQ 377

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y+ L+    +    + A  + ++M++S N QP+++ FS ++     +G+  +   +  E
Sbjct: 378 TYSLLIDAYGNAERWESARIVLKEMEAS-NVQPNAYVFSRILASYRDKGEWQKTFQVLRE 436

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M ++G  P+      LI  +GK    D  +   +R+   GI PD
Sbjct: 437 MEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPD 480



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 17/268 (6%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PNA  FS ++  Y   G +     V  EM+  GV+P+ I YN L+DT G+    
Sbjct: 403 EASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCL 462

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                 +  M   G+ P+  T+ +L+  + +A   +    ++ EM EKG     T +N +
Sbjct: 463 DHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIM 522

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +    D    D+   +  +M+S +   P++ T++++I I    G+  +A    ++M  AG
Sbjct: 523 INSFGDQERWDDVKNLLTNMRS-QGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAG 581

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
            +P+  +  +L+  Y +   +D  V A   + + G+ P       L+N          GK
Sbjct: 582 LKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINA--------FGK 633

Query: 353 LVECVEKSNSKLGYVVKLLLEEQDIEGD 380
               VE       +VV   ++E D++ D
Sbjct: 634 DRRDVE------AFVVLQYMKENDLKPD 655



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  + A  L++    + +      F+ +I  +G    +D   N+   M++ G+ PN +
Sbjct: 493 KAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAV 552

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  G++ R         +M   GL P+   Y +LL AY +    +  +S +  M
Sbjct: 553 TYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAM 612

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G++ S+   N+L+          EAF + + MK ++  +PD  T+++++       K
Sbjct: 613 RDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKEND-LKPDVVTYTTLMKALILVEK 671

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +  +++ EM+ +G  P+
Sbjct: 672 FDKVPSVYEEMILSGCTPD 690



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 102/220 (46%), Gaps = 3/220 (1%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           ++K  + P  ++ LI       + +  LN+   M+  G   +++ Y+ ++ ++ +  R  
Sbjct: 192 SQKQNLTPLTYNALISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSLMKNNRAN 251

Query: 174 Q--VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
              ++ IY+E+  + L  +   +  ++  + +A   +  L     ++  G+ +      T
Sbjct: 252 SSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVT 311

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           ++    + G T+EA  IFE+M+ +   QP +  +++++      G + +AE + +EM  +
Sbjct: 312 VIWGLGNCGRTEEAEAIFEEMRDN-GLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERS 370

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G  PN    + LI  YG A+R +     L  +    + P+
Sbjct: 371 GVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPN 410


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 118/234 (50%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  + A  +++  RNE  + +   F+ LIK++G  G F   + V+E++K     P+++
Sbjct: 116 KAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIV 175

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM   G  P  +T+ +L+ +Y R    +  ++VY+ M
Sbjct: 176 TWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM 235

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   ++ YN +LA  A  G   ++ ++  +MK    C+P+  T+ S++   +   +
Sbjct: 236 LEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGR-CKPNELTYCSLLHAYANGKE 294

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +    A+  E+     EP   +L +L+    K     +  RA   L + G +PD
Sbjct: 295 IERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPD 348



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 1/225 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           G++   +   +  + + F+TLI  Y   G+FD  + VY+ M   GV P++ +YN +L  +
Sbjct: 195 GVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAAL 254

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            R     Q + +  EM D    PN  TY SLL AY   +  E   ++  E+    ++   
Sbjct: 255 ARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRA 314

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
            L  TL+ + +      E    F +++      PD  T ++M++I   R  V++A  + +
Sbjct: 315 VLLKTLVLVNSKCDLLMETERAFLELRQ-RGFSPDITTLNAMVSIYGRRQMVAKANEILD 373

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            M   GF P+L    SL+  Y ++   +     L  +   GI PD
Sbjct: 374 CMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPD 418



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 1/183 (0%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           + E++  G  P++ T N ++   GR +   +   I   M   G +P+  TY SL+  Y R
Sbjct: 337 FLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSR 396

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           +   E +  + RE+  KG++  +  YNT++      G   +A  +  +M+ S    PD  
Sbjct: 397 SANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRES-GPAPDII 455

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+++ I   +      EA  +   M++ G +PN     S++  Y K  R D+    +N L
Sbjct: 456 TYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL 515

Query: 324 PEL 326
            +L
Sbjct: 516 RKL 518



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 109/270 (40%), Gaps = 36/270 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+ + A  +Y R        D ++++ ++      G +     V  EMK    KPN 
Sbjct: 220 SRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNE 279

Query: 157 ITYNNLLDTMGRAK-------------------RPWQVKTI----------------YKE 181
           +TY +LL      K                   R   +KT+                + E
Sbjct: 280 LTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLE 339

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +   G SP+  T  +++  YGR +       +   MK  G   S+T YN+L+ M +    
Sbjct: 340 LRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSAN 399

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            + + EI  ++  ++  +PD  +++++I      G++ +A  + +EM E+G  P++    
Sbjct: 400 FERSEEILREI-LAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYN 458

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + I  Y       + +  +  + + G  P+
Sbjct: 459 TFIASYAADSMFVEAIDVVCYMIKHGCKPN 488



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 1/157 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R   +  D    + ++ +YG          + + MK  G  P++ TYN+L+    R+   
Sbjct: 341 RQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANF 400

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + + I +E+   G+ P+  +Y +++ AY R     D   V  EM+E G    +  YNT 
Sbjct: 401 ERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTF 460

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +A  A      EA ++   M     C+P+  T++S++
Sbjct: 461 IASYAADSMFVEAIDVVCYM-IKHGCKPNQSTYNSIV 496



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 62/122 (50%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++L+ +Y  + NF+    +  E+ A G++P++I+YN ++    R  R      +  EM 
Sbjct: 387 YNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMR 446

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           ++G +P+  TY + + +Y       + + V   M + G + + + YN+++     +   D
Sbjct: 447 ESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRD 506

Query: 244 EA 245
           EA
Sbjct: 507 EA 508



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 46/105 (43%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R+ N E +  +      +  R D  +++T+I  Y   G       V  EM+  G  P++
Sbjct: 395 SRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDI 454

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           ITYN  + +        +   +   M  +G  PN +TY S++  Y
Sbjct: 455 ITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWY 499


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 120/234 (51%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G VE A  ++   ++   R +   ++++I   G +G+ D    ++EEM + G+    +
Sbjct: 171 KCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRV 230

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN+L+  +GR+ R      +++EM   GL P+  T+ SL+   G A    +   +++E 
Sbjct: 231 VYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEA 290

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G  L V LYN L+         DEA+EIF +++  +   PD +TF++++      G+
Sbjct: 291 RDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELE-EDGLVPDVYTFNALMDGLCKSGR 349

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +A  +  +M  AG  P++ V  +LI    K+ R ++  + L  +  LG  PD
Sbjct: 350 IHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPD 403



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 121/249 (48%), Gaps = 1/249 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG +E +     R    +  +  +A+++LI  +  AG     L VY  M   G++P+  T
Sbjct: 67  AGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYT 126

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N L++   +AKR   V  +++EM +   SPN  TY+ L+ A  +    E  L V+ +MK
Sbjct: 127 FNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMK 186

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            +G + ++  Y +++      G+ D+AF +FE+M +SE        ++S+I      G+ 
Sbjct: 187 SRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEM-TSEGLVATRVVYNSLIHGLGRSGRA 245

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
             A  +F EML  G +P+    TSL+   G A R  +  R      ++G   D      L
Sbjct: 246 DAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVL 305

Query: 339 LNVMTQTPK 347
           ++ + ++ +
Sbjct: 306 IDTLCKSKR 314



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG  + A  +Y        R D   F+ L+  +  A   D    ++EEM+     PN+
Sbjct: 100 VKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNV 159

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITY+ L+D + +     +   ++ +M   G  PN  TY S++   G++ + +    ++ E
Sbjct: 160 ITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEE 219

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G+  +  +YN+L+      G  D A ++F +M  S+  QPD  TF+S++      G
Sbjct: 220 MTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREM-LSKGLQPDHVTFTSLVYGLGVAG 278

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + SEA  +F E  + G   ++ +   LI    K++R D+       L E G+ PD
Sbjct: 279 RASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPD 333



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 144/298 (48%), Gaps = 4/298 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+  + L++  +N+    +   +S LI      G  +  L V+ +MK+ G +PN+ 
Sbjct: 136 KAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIF 195

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY +++D +G++    +   +++EMT  GL      Y SL+   GR+   +    ++REM
Sbjct: 196 TYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREM 255

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRG 276
             KG+Q     + +L+      G   EA  IF++ +    C  D   ++ +I T+C  + 
Sbjct: 256 LSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDV-GCALDVNLYNVLIDTLCKSK- 313

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ EA  +F E+ E G  P+++   +L+    K+ R  D    L  +   G TPD     
Sbjct: 314 RLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYN 373

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
            L++ + ++ + EE G+L+  ++    +   V    L ++  +G   ++A  LF  IS
Sbjct: 374 TLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEIS 431



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 116/231 (50%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+V+ AF L++   +E        +++LI   G +G  D    ++ EM + G++P+ +
Sbjct: 206 KSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHV 265

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+  +G A R  + + I++E  D G + + N Y  L+    +++  ++   ++ E+
Sbjct: 266 TFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGEL 325

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G+   V  +N L+      G   +AF +  DMK +  C PD   ++++I      G+
Sbjct: 326 EEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRA-GCTPDVTVYNTLIDGLRKSGR 384

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           V EA  +  EM   G+EP++    +LI    K  R +D +R    +   G 
Sbjct: 385 VEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF 435



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 1/216 (0%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           ++ + P  F  L + Y +AG  +  +   + M+          YN+L+D   +A    + 
Sbjct: 49  RYILQPRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKA 108

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             +Y+ M  +GL P+  T+  L+ A+ +A+  +    ++ EM+ +    +V  Y+ L+  
Sbjct: 109 LAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDA 168

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  ++A ++F DMK S  C+P+ +T++SMI      G V +A  +F EM   G   
Sbjct: 169 VCKCGGVEKALKVFLDMK-SRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVA 227

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              V  SLI   G++ R D   +    +   G+ PD
Sbjct: 228 TRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPD 263



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 100/210 (47%), Gaps = 6/210 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG    A  ++  AR+    +D N ++ LI     +   D    ++ E++  G+ P++ T
Sbjct: 277 AGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYT 336

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N L+D + ++ R      +  +M   G +P+   Y +L+    ++   E+   +  EM+
Sbjct: 337 FNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQ 396

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G +  V  YNTL+      G  ++A  +FE++  S     ++ T+++++      G+V
Sbjct: 397 SLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEI--SAKGFANTVTYNTILNGLCMAGRV 454

Query: 279 SEAEAMFNEM----LEAGFEPNLFVLTSLI 304
            EA  +FN M    ++   +P+    T+L+
Sbjct: 455 DEAYKLFNGMKQETVDGVIDPDFVTYTTLL 484



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 36/199 (18%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  P++     L++ +G A+R  + + +  E+  +        +  L R Y  A   E +
Sbjct: 14  GGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIELARGYASAGLLEKS 73

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--------------- 255
           +   + M+     L+ + YN+L+      GYT +A  ++  M  S               
Sbjct: 74  VEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNA 133

Query: 256 -------------------ENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEP 295
                              +NC P+  T+S +I  +C C G V +A  +F +M   G  P
Sbjct: 134 FKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKC-GGVEKALKVFLDMKSRGCRP 192

Query: 296 NLFVLTSLIQCYGKAQRTD 314
           N+F  TS+I   GK+   D
Sbjct: 193 NIFTYTSMIDGLGKSGHVD 211



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 70/152 (46%), Gaps = 5/152 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G +  AF L    +      D   ++TLI     +G  +    +  EM+++G +P+++
Sbjct: 346 KSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVV 405

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D   +  R      +++E++  G + N  TY ++L     A   ++   ++  M
Sbjct: 406 TYNTLIDESCKGGRIEDALRLFEEISAKGFA-NTVTYNTILNGLCMAGRVDEAYKLFNGM 464

Query: 218 KEKGMQLSV----TLYNTLLAMCADVGYTDEA 245
           K++ +   +      Y TLL      G ++ A
Sbjct: 465 KQETVDGVIDPDFVTYTTLLNGARQAGLSELA 496


>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 808

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 124/254 (48%), Gaps = 14/254 (5%)

Query: 92  EKSYDTRAGNVEMAFGLY------DRARN-----EKWRIDPNA--FSTLIKLYGTAGNFD 138
           +K+Y  R     M   L+      D+AR      ++WR  P++  ++ LI  +G AG + 
Sbjct: 136 QKNYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHGRAGQWR 195

Query: 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
             +N+ E+M    + P+  TYNNL++  G +    +   + K+MT+NG+ P+  T+  +L
Sbjct: 196 WAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVL 255

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-N 257
            AY         LS +  MK   ++   T  N ++     +G  ++A +IF  M+     
Sbjct: 256 SAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAE 315

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           C+PD  TF+S+I + S  G+V   +A+F+ ML  G  P +    +LI  Y     +++ +
Sbjct: 316 CRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAFHGMSEEAL 375

Query: 318 RALNRLPELGITPD 331
               ++   G+ PD
Sbjct: 376 SVFKKIKASGLLPD 389



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 111/237 (46%), Gaps = 3/237 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            + G  E A  +++  R ++    P+   F+++I LY  +G  + C  V+  M A G+ P
Sbjct: 294 VKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTP 353

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
            +++YN L+          +  +++K++  +GL P+  +Y SLL +YGR++  +    ++
Sbjct: 354 TIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMF 413

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             MK+  ++ +V  +N L+      G   +A ++  +M+  +   P+  T  +++  C  
Sbjct: 414 NMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREME-QDGIHPNIVTICTLLAACGR 472

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+    +A+ +     G + N     S I  Y      +  V   N + ++ + P+
Sbjct: 473 CGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPN 529



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 36/244 (14%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ LI  Y   G  +  L+V++++KA G+ P++++Y +LL + GR+K+P + + ++  M
Sbjct: 357 SYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMM 416

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA----- 237
               L PN  ++ +L+ AYG      D + V REM++ G+  ++    TLLA C      
Sbjct: 417 KKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQK 476

Query: 238 ------------------------------DVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
                                         +VG  ++A  ++  M+  +   P+S T++ 
Sbjct: 477 VNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMK-VAPNSVTYTV 535

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I+ C    K  +A   F +M+E        V +S+I  Y K  +  +       +   G
Sbjct: 536 LISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMKMAG 595

Query: 328 ITPD 331
             PD
Sbjct: 596 CCPD 599



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 15/233 (6%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           +K ++ PN  +F+ LI  YG+ G     + V  EM+  G+ PN++T   LL   GR  + 
Sbjct: 417 KKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQK 476

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
             +  +       G+  N     S + +Y      E  +++Y  M++  +  +   Y  L
Sbjct: 477 VNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVL 536

Query: 233 LAMCADVGYTDEAFEIFEDMK------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
           ++ C  +    +A E F DM       + E C       SS+I   S +G+++EAE++F 
Sbjct: 537 ISGCCKMSKYGKAIEFFADMMELKIALTKEVC-------SSVICAYSKQGQITEAESIFT 589

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            M  AG  P++   T+++  Y   +        +  + +  I  D   C  L+
Sbjct: 590 MMKMAGCCPDIITFTAMLHAYNAGEHWGKACDLIQEMEDYDIQLDTIACSALM 642



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/234 (17%), Positives = 99/234 (42%), Gaps = 11/234 (4%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNM 156
            G  E A  LY+  R  K ++ PN+ +  + + G      +   +  + +M  + +    
Sbjct: 508 VGEYEKAVALYNSMR--KMKVAPNSVTYTVLISGCCKMSKYGKAIEFFADMMELKIALTK 565

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
              ++++    +  +  + ++I+  M   G  P+  T+ ++L AY    +      + +E
Sbjct: 566 EVCSSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAYNAGEHWGKACDLIQE 625

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++  +QL     + L+      G   +   + E MK  E    D+  F  M++ CS   
Sbjct: 626 MEDYDIQLDTIACSALMRAFNKRGNPSQVLILAEFMKEKEIPFSDA-IFFEMVSACSL-- 682

Query: 277 KVSEAEAMFNEM--LEAGFE-PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            + +   + N M  +E  F   ++ +L  L+   G++ + + +++   ++   G
Sbjct: 683 -LRDWRTILNLMKLMEPSFSVVSIGLLNQLLHVLGRSGKIESMMKLFYKITASG 735



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/206 (17%), Positives = 85/206 (41%), Gaps = 1/206 (0%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           S++I  Y   G      +++  MK  G  P++IT+  +L      +   +   + +EM D
Sbjct: 569 SSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAYNAGEHWGKACDLIQEMED 628

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
             +  +    ++L+RA+ +       L +   MKEK +  S  ++  +++ C+ +     
Sbjct: 629 YDIQLDTIACSALMRAFNKRGNPSQVLILAEFMKEKEIPFSDAIFFEMVSACSLLRDWRT 688

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
              + + M+ S +        + ++ +    GK+     +F ++  +G E N    + ++
Sbjct: 689 ILNLMKLMEPSFSVVSIG-LLNQLLHVLGRSGKIESMMKLFYKITASGAEINFNTYSIML 747

Query: 305 QCYGKAQRTDDVVRALNRLPELGITP 330
           +           +  L  + + GI P
Sbjct: 748 KNLLAVGNWRKYIEVLEWMEDAGIQP 773


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 126/236 (53%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+V  A   +D   ++K   D   ++TLI+ +G  G      N++ EM + G+KP+ +
Sbjct: 375 KLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEV 434

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE-DTLS-VYR 215
           TY  L+D   +A       +++ EM   G++PN  TY +L+   G  ++GE DT + +  
Sbjct: 435 TYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID--GLCKHGELDTANELLD 492

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM++KG+QL+V +YN+++      G  ++A ++ ++M+ +    PD+ T++++I      
Sbjct: 493 EMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVA-GIDPDAITYTTVIDAYCRL 551

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G + +A  +  EML+ G +P +     L+  +      +D  R L  + E GI PD
Sbjct: 552 GDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPD 607



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 111/235 (47%), Gaps = 3/235 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  L D  R +  +++   +++++     AGN +  + + +EM+  G+ P+ I
Sbjct: 480 KHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAI 539

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D   R     +   + +EM D GL P   T+  L+  +      ED   +   M
Sbjct: 540 TYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+      YNTL+         +   +I++ M+ ++   PDS T++ +I    C+ +
Sbjct: 600 LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMR-NQGVAPDSNTYNILIK-GHCKAR 657

Query: 278 -VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + EA  ++ EM+E G+ P +    +LI+ + K ++  +       +   G+  D
Sbjct: 658 NLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVAD 712



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  L  +        D  ++ST+I  Y   G     L + ++M+  G+KPN  
Sbjct: 270 RLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRY 329

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+++  + +  + ++ + + +EM    + P+   Y +L+  + +  +       + EM
Sbjct: 330 TYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEM 389

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             K +      Y TL+      G   E   +F +M  S   +PD  T++++I +    G+
Sbjct: 390 LSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM-ISRGLKPDEVTYTTLIDVYCKAGE 448

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +  A ++ NEM++ G  PN+    +LI    K    D     L+ + + G+
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGL 499



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 95/190 (50%), Gaps = 7/190 (3%)

Query: 154 PNMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           P++++Y+ ++D    +G  K+  +   +  +M   GL PN  TY S++    +     + 
Sbjct: 291 PDVVSYSTVIDGYCHLGELKKALK---LMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEA 347

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             V REM  + +     +Y TL+     +G+   A + F++M  S+   PD  T++++I 
Sbjct: 348 EKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEM-LSKKISPDYITYTTLIQ 406

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                GKV E + +F+EM+  G +P+    T+LI  Y KA    +     N + ++G+TP
Sbjct: 407 GFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTP 466

Query: 331 DDRFCGCLLN 340
           +    G L++
Sbjct: 467 NIVTYGALID 476



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 135/300 (45%), Gaps = 15/300 (5%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           NAF + I     A N +G     +     G+  N  +YN ++ ++ R  +  +   +  +
Sbjct: 229 NAFLSRI-----ANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQ 283

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M     +P+  +Y++++  Y      +  L +  +M+ KG++ +   YN+++ +   +G 
Sbjct: 284 MDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
           + EA ++  +M  S+   PD+  ++++I      G V  A   F+EML     P+    T
Sbjct: 344 SFEAEKVLREM-MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYT 402

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           +LIQ +G+  +  +     + +   G+ PD+     L++V  +      G++V      N
Sbjct: 403 TLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKA-----GEMVNAFSLHN 457

Query: 362 S--KLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 419
              ++G    ++     I+G  K    +  N +  +++K      +++C+  +++   CK
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKK--GLQLNVCIYNSMVNGICK 515



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TL+K +    + +    +Y+ M+  GV P+  TYN L+    +A+   +   +Y
Sbjct: 607 DAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLY 666

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC--- 236
           KEM + G  P   +Y +L++ + + +   +   ++ EM+  G+     +YN  + MC   
Sbjct: 667 KEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEE 726

Query: 237 ADVGYT----DEAFE 247
            DV  T    DEA E
Sbjct: 727 GDVEITLNLCDEAIE 741



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +Y R RN+    D N ++ LIK +  A N      +Y+EM   G  P + +YN L+    
Sbjct: 630 IYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFY 689

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           + K+  + + +++EM  +GL  +   Y
Sbjct: 690 KKKKILEARELFEEMRGHGLVADGEIY 716


>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
          Length = 600

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 124/239 (51%), Gaps = 7/239 (2%)

Query: 105 AFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           A  +++   NEK   ++ D   F  +I +Y  AG++     ++ +M   G+  + +T+N+
Sbjct: 229 AEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNS 288

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+      K   +V  IY +M   GL P+  +Y+ L++AYG+AR  E+ L+V+ EM + G
Sbjct: 289 LMSFETEYK---EVSNIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAG 345

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +   YN LL   A  G  +EA  +F  M+     +PD  ++++M+       +++ A
Sbjct: 346 VRPTRKSYNILLDAFAISGLVEEANTVFRAMR-RHRVEPDLCSYTTMVLAYVNASEMNGA 404

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           E  F  + E G +PN+ V  +L++ Y K    + V+R   R+   G+ P+      +++
Sbjct: 405 EKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNLEKVMRVYERMRIQGVEPNQTIYTTIMD 463



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 12/247 (4%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    + D  ++S LIK YG A   +  L V+EEM   GV+P   +YN LLD   
Sbjct: 302 IYDQMQRAGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFA 361

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            +    +  T+++ M  + + P+  +Y +++ AY  A         +R +KE G++ +V 
Sbjct: 362 ISGLVEEANTVFRAMRRHRVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIKEDGLKPNVV 421

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAM 284
           +Y TL+   + +   ++   ++E M+  +  +P+   ++   TI   +G+ S+   A   
Sbjct: 422 VYGTLMKGYSKLNNLEKVMRVYERMR-IQGVEPNQTIYT---TIMDAQGRNSDFGNAVIW 477

Query: 285 FNEMLEAGFEPNLF---VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           F EM   G+ P+     +L SL +   + Q  +D+V   N   +L + PD    G   + 
Sbjct: 478 FKEMEARGYPPDQKAKNILLSLAKTPEEEQEANDLVG--NGPVQLEVKPDGEVDGDDGHE 535

Query: 342 MTQTPKE 348
           + QT  E
Sbjct: 536 VIQTDAE 542



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 105/208 (50%), Gaps = 2/208 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           N+Y++M+  G+KP++++Y+ L+   G+A+R  +   +++EM D G+ P   +Y  LL A+
Sbjct: 301 NIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAF 360

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
             +   E+  +V+R M+   ++  +  Y T++    +    + A + F  +K  +  +P+
Sbjct: 361 AISGLVEEANTVFRAMRRHRVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIK-EDGLKPN 419

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
              + +++   S    + +   ++  M   G EPN  + T+++   G+     + V    
Sbjct: 420 VVVYGTLMKGYSKLNNLEKVMRVYERMRIQGVEPNQTIYTTIMDAQGRNSDFGNAVIWFK 479

Query: 322 RLPELGITPDDRFCGCLLNVMTQTPKEE 349
            +   G  PD +    LL+ + +TP+EE
Sbjct: 480 EMEARGYPPDQKAKNILLS-LAKTPEEE 506



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  L+  YG  G+F     V + M   G +P++I+   L++  GR K+  + +
Sbjct: 136 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAE 195

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVTLYNTLL 233
            +++ M  +G  P+  TY  +L++       ++  +++ ++   K    +    +++ ++
Sbjct: 196 AVFRRMQTSGPQPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMI 255

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            M    G   +A ++F  M  SE   P  + TF+S+++  +   +VS    ++++M  AG
Sbjct: 256 YMYKKAGDYAQARKLFAQM--SERGIPLSTVTFNSLMSFETEYKEVSN---IYDQMQRAG 310

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            +P++   + LI+ YGKA+R ++ +     + + G+ P  +    LL+
Sbjct: 311 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLD 358



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 73/163 (44%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R  +   D  +++T++  Y  A   +G    +  +K  G+KPN++ 
Sbjct: 363 SGLVEEANTVFRAMRRHRVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIKEDGLKPNVVV 422

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +     +V  +Y+ M   G+ PN   Y +++ A GR     + +  ++EM+
Sbjct: 423 YGTLMKGYSKLNNLEKVMRVYERMRIQGVEPNQTIYTTIMDAQGRNSDFGNAVIWFKEME 482

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            +G        N LL++        EA ++  +       +PD
Sbjct: 483 ARGYPPDQKAKNILLSLAKTPEEEQEANDLVGNGPVQLEVKPD 525


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 10/249 (4%)

Query: 110 DRARN-----EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           D+AR      +KWR  P+A   + LI  +G +G +   +N+ E+M    + P+  TYNNL
Sbjct: 152 DQARGLFFEMQKWRCKPDAETCNALINAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYNNL 211

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++  G +    +   + K+MT+NG+ P+  T+  +L AY         LS +  MK   +
Sbjct: 212 INACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKGTNI 271

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKVSEA 281
           +   T  N ++     +G  ++A  IF+ M+     C PD  TF+S+I + S  G++   
Sbjct: 272 RPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENC 331

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
            A+F+ M+  G +PN+    +L+  Y       + +   N +   G+ PD      LLN 
Sbjct: 332 RAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNS 391

Query: 342 M--TQTPKE 348
              +Q PK+
Sbjct: 392 YGRSQQPKK 400



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 128/279 (45%), Gaps = 31/279 (11%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           +Y +   N E A  +++  +N   R D  ++++L+  YG +        V+E MK   +K
Sbjct: 356 AYASHGMNKE-ALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLK 414

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN+++YN ++D  G      +   + +EM  +G+ PN  +  +LL A GR     +   V
Sbjct: 415 PNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVV 474

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            +  + + ++L+   YN+ +    +VG  ++A  ++  M+ S+   PD+ TF+ +I+ C 
Sbjct: 475 LQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSK-VIPDAVTFTVLISGC- 532

Query: 274 CR----------------------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           C+                            GK++EAE+MFN+M  AG  P++   T ++ 
Sbjct: 533 CKMTKYCEALEFLSEMMDLKIPMTKEAYSSGKITEAESMFNKMKMAGCSPDVVTYTMMLH 592

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            Y  A+        L  + E  I PD   C  L+    +
Sbjct: 593 AYNAAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNK 631



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 61/123 (49%)

Query: 133 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192
           ++G      +++ +MK  G  P+++TY  +L     A+   +   + +EM +  + P+  
Sbjct: 561 SSGKITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTI 620

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
             ++L+RA+ +       L +   M+EK + LS  ++  +++ C+ +       E+ + M
Sbjct: 621 ACSALMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLM 680

Query: 253 KSS 255
           +SS
Sbjct: 681 ESS 683


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 126/236 (53%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+V  A   +D   ++K   D   ++TLI+ +G  G      N++ EM + G+KP+ +
Sbjct: 375 KLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEV 434

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE-DTLS-VYR 215
           TY  L+D   +A       +++ EM   G++PN  TY +L+   G  ++GE DT + +  
Sbjct: 435 TYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID--GLCKHGELDTANELLD 492

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM++KG+QL+V +YN+++      G  ++A ++ ++M+ +    PD+ T++++I      
Sbjct: 493 EMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVA-GIDPDAITYTTVIDAYCRL 551

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G + +A  +  EML+ G +P +     L+  +      +D  R L  + E GI PD
Sbjct: 552 GDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPD 607



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 111/235 (47%), Gaps = 3/235 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  L D  R +  +++   +++++     AGN +  + + +EM+  G+ P+ I
Sbjct: 480 KHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAI 539

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D   R     +   + +EM D GL P   T+  L+  +      ED   +   M
Sbjct: 540 TYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+      YNTL+         +   +I++ M+ ++   PDS T++ +I    C+ +
Sbjct: 600 LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMR-NQGVAPDSNTYNILIK-GHCKAR 657

Query: 278 -VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + EA  ++ EM+E G+ P +    +LI+ + K ++  +       +   G+  D
Sbjct: 658 NLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVAD 712



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  L  +        D  ++ST+I  Y   G     L + ++M+  G+KPN  
Sbjct: 270 RLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRY 329

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+++  + +  + ++ + + +EM    + P+   Y +L+  + +  +       + EM
Sbjct: 330 TYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEM 389

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             K +      Y TL+      G   E   +F +M  S   +PD  T++++I +    G+
Sbjct: 390 LSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM-ISRGLKPDEVTYTTLIDVYCKAGE 448

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +  A ++ NEM++ G  PN+    +LI    K    D     L+ + + G+
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGL 499



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 95/190 (50%), Gaps = 7/190 (3%)

Query: 154 PNMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           P++++Y+ ++D    +G  K+  +   +  +M   GL PN  TY S++    +     + 
Sbjct: 291 PDVVSYSTVIDGYCHLGELKKALK---LMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEA 347

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             V REM  + +     +Y TL+     +G+   A + F++M  S+   PD  T++++I 
Sbjct: 348 EKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEM-LSKKISPDYITYTTLIQ 406

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                GKV E + +F+EM+  G +P+    T+LI  Y KA    +     N + ++G+TP
Sbjct: 407 GFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTP 466

Query: 331 DDRFCGCLLN 340
           +    G L++
Sbjct: 467 NIVTYGALID 476



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 135/300 (45%), Gaps = 15/300 (5%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           NAF + I     A N +G     +     G+  N  +YN ++ ++ R  +  +   +  +
Sbjct: 229 NAFLSRI-----ANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQ 283

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M     +P+  +Y++++  Y      +  L +  +M+ KG++ +   YN+++ +   +G 
Sbjct: 284 MDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
           + EA ++  +M  S+   PD+  ++++I      G V  A   F+EML     P+    T
Sbjct: 344 SFEAEKVLREM-MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYT 402

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           +LIQ +G+  +  +     + +   G+ PD+     L++V  +      G++V      N
Sbjct: 403 TLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKA-----GEMVNAFSLHN 457

Query: 362 S--KLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 419
              ++G    ++     I+G  K    +  N +  +++K      +++C+  +++   CK
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKK--GLQLNVCIYNSMVNGICK 515



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TL+K +    + +    +Y+ M+  GV P+  TYN L+    +A+   +   +Y
Sbjct: 607 DAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLY 666

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC--- 236
           KEM + G  P   +Y +L++ + + R   +   ++ EM+  G+     +YN  + MC   
Sbjct: 667 KEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEE 726

Query: 237 ADVGYT----DEAFE 247
            DV  T    DEA E
Sbjct: 727 GDVEITLNLCDEAIE 741



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +Y R RN+    D N ++ LIK +  A N      +Y+EM   G  P + +YN L+    
Sbjct: 630 IYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFY 689

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           + ++  + + +++EM  +GL  +   Y
Sbjct: 690 KKRKFXEARELFEEMRGHGLVADGEIY 716


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GN+E  F +          +D  +++TLI     +G  +    + E+M   G KP+  TY
Sbjct: 501 GNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTY 560

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+  +    +   V  +  E  D+G+ PN  TYA +L  Y  A   ++ +S++ ++  
Sbjct: 561 NFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVY 620

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             ++LS  +YN L+A  +  G   EAF++ + M+SS N  P  +T+SS+I    C   V 
Sbjct: 621 NKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSS-NIHPTIFTYSSIIHGMCCNDLVE 679

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA+ +F EM   G  PN+F  T+LI  Y K  + D +   L  +    I P+
Sbjct: 680 EAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPN 731



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 39/249 (15%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+ LI  Y   GN D  L V ++M   G+KPN +T+N LL    R  +  Q + +
Sbjct: 344 PNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQV 403

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV------------------------- 213
            + +  N LS N +  + +L    ++   +  L +                         
Sbjct: 404 LEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCK 463

Query: 214 -----------YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
                      +R   +KG+  + T  N LL    + G  +E F + ++M        D 
Sbjct: 464 CGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEM-VERGLVLDG 522

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            +++++I  C   GK+ EA  +  +M++ GF+P+ +    L++      + DDV R L+ 
Sbjct: 523 ISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHE 582

Query: 323 LPELGITPD 331
             + G+ P+
Sbjct: 583 AKDHGVVPN 591



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 118/286 (41%), Gaps = 44/286 (15%)

Query: 86  RASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 139
           R   L   SY+T      ++G +E AF L ++   + ++ D   ++ L+K     G  D 
Sbjct: 516 RGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDD 575

Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
              V  E K  GV PN+ TY  +L+    A R     +++ ++  N +  ++  Y  L+ 
Sbjct: 576 VGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIA 635

Query: 200 AYGRAR----------------------------YG-------EDTLSVYREMKEKGMQL 224
           A+ +A                             +G       E+   ++ EM+ +G+  
Sbjct: 636 AHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMP 695

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEA 283
           +V  Y  L+     +G  D+   I ++M S  NC QP+  T++ MI      G   EA  
Sbjct: 696 NVFCYTALIGGYCKLGQMDQIESILQEMTS--NCIQPNKITYTIMIDGYCKMGNTKEATK 753

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           + NEM+  G  P+    T L + Y K    ++ ++    +P   IT
Sbjct: 754 LLNEMIANGISPDTVTYTVLQKGYCKENELEETLQGDTAVPLEEIT 799



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 109/236 (46%), Gaps = 1/236 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++  +  +F ++D        ID   ++T I  Y   G  D  + ++ +M   GV PN+
Sbjct: 217 VKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNV 276

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYNNL+D + ++ R  +       M +N ++P+  TY  L+    +    ++  SV  E
Sbjct: 277 VTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVE 336

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  KG   +  ++N L+   +  G  D+A  + +DM + +  +P++ T ++++       
Sbjct: 337 MYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDM-TLKGLKPNAVTHNTLLQGFCRTN 395

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           ++ +AE +   +L      N    + ++    K+ + D  ++ +  L    I  +D
Sbjct: 396 QMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLRNIKVND 451



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 1/199 (0%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           GV P++ + N L+ ++ ++    +   ++  M   G+  +  TYA+ + AY +    ++ 
Sbjct: 201 GVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEA 260

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + ++ +M E G+  +V  YN L+      G  +EA  +F+         P   T+  ++ 
Sbjct: 261 VGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEAL-MFKGRMVENKVNPSLVTYGILVN 319

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                 K  EA ++  EM   GF PN FV  +LI  Y +    DD +R  + +   G+ P
Sbjct: 320 GLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKP 379

Query: 331 DDRFCGCLLNVMTQTPKEE 349
           +      LL    +T + E
Sbjct: 380 NAVTHNTLLQGFCRTNQME 398



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 10/175 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKP 154
           ++AGN   AF L D  R+    I P  F+    ++G   N   +    ++EEM+  G+ P
Sbjct: 638 SKAGNFTEAFKLRDAMRSS--NIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMP 695

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N+  Y  L+    +  +  Q+++I +EMT N + PN  TY  ++  Y +    ++   + 
Sbjct: 696 NVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLL 755

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            EM   G+      Y  L       GY  E  E+ E ++       +  T+++++
Sbjct: 756 NEMIANGISPDTVTYTVL-----QKGYCKEN-ELEETLQGDTAVPLEEITYTTLV 804


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 125/284 (44%), Gaps = 40/284 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW------ 173
           D +A++ L+  +  A  F   + V+  M A G++P ++TYN +L    +   PW      
Sbjct: 177 DASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVAL 236

Query: 174 ------------------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
                                         +   ++ EM   G  P+  T+ SLL  YG+
Sbjct: 237 VDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGK 296

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           AR  ++ + V +EM+  G   SV  YN+L++     G   EA E+ E+M+  +  QPD  
Sbjct: 297 ARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEV-KGIQPDVI 355

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T++++I+     GK+  A   ++EML  G +PNL    +LI+ +G   +  +++   + L
Sbjct: 356 TYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDL 415

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 367
              G  PD      LL V  Q     L   V  V K   K GYV
Sbjct: 416 RSAGFVPDVVTWNTLLAVFGQN---GLDSEVSGVFKEMKKSGYV 456



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 116/225 (51%), Gaps = 1/225 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
            L D  +N+   +D   ++TLI        +     V++EM+A G +P+ +T+N+LLD  
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY 294

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           G+A+   +   + KEM   G  P+  TY SL+ +Y +    ++   +  EM+ KG+Q  V
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDV 354

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y TL++     G  D A   +++M  +  C+P+  T++++I +   RGK  E  A+F+
Sbjct: 355 ITYTTLISGLDRAGKIDAAIGTYDEMLRN-GCKPNLCTYNALIKLHGVRGKFPEMMAVFD 413

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++  AGF P++    +L+  +G+     +V      + + G  P+
Sbjct: 414 DLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPE 458



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 129/245 (52%), Gaps = 8/245 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG ++ A G YD       + +   ++ LIKL+G  G F   + V++++++ G  P+++
Sbjct: 366 RAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVV 425

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM  +G  P  +TY SL+ +Y R    + ++ +Y+ M
Sbjct: 426 TWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRM 485

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   ++ YN +L+  A  G  ++A ++F +M++ + C+PD  ++SS++   +   K
Sbjct: 486 IEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLD-CRPDELSYSSLLHAYANAKK 544

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + + +A+  ++     E +  ++ +L+    K     +  +A     ELG     R C  
Sbjct: 545 LDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFL---ELG----RRRCSL 597

Query: 338 LLNVM 342
            +NV+
Sbjct: 598 DINVL 602



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 116/240 (48%), Gaps = 1/240 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++D  R   +  D   F++L+ +YG A   D  + V +EM+  G  P+++TYN+L+ 
Sbjct: 268 AAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLIS 327

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +  +     +   + +EM   G+ P+  TY +L+    RA   +  +  Y EM   G + 
Sbjct: 328 SYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKP 387

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           ++  YN L+ +    G   E   +F+D++S+    PD  T+++++ +    G  SE   +
Sbjct: 388 NLCTYNALIKLHGVRGKFPEMMAVFDDLRSA-GFVPDVVTWNTLLAVFGQNGLDSEVSGV 446

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           F EM ++G+ P      SLI  Y +    D  +    R+ E GI PD      +L+ + +
Sbjct: 447 FKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALAR 506



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 5/199 (2%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG-RAKRPWQV 175
           I P+   ++TLI     AG  D  +  Y+EM   G KPN+ TYN L+   G R K P ++
Sbjct: 350 IQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFP-EM 408

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             ++ ++   G  P+  T+ +LL  +G+     +   V++EMK+ G       Y +L++ 
Sbjct: 409 MAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISS 468

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            +  G  D++ EI++ M  +    PD  T++++++  +  G+  +AE +F EM      P
Sbjct: 469 YSRCGLFDQSMEIYKRMIEA-GIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRP 527

Query: 296 NLFVLTSLIQCYGKAQRTD 314
           +    +SL+  Y  A++ D
Sbjct: 528 DELSYSSLLHAYANAKKLD 546



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           P+ + Y +L+ A+ RA    D ++V+R M   G+Q ++  YN +L + + +    +    
Sbjct: 176 PDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVA 235

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
             D   ++    D +T++++I+ C       EA  +F+EM  AGFEP+     SL+  YG
Sbjct: 236 LVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYG 295

Query: 309 KAQRTDDVVRALNRLPELGITP 330
           KA+  D+ +  L  + ELG  P
Sbjct: 296 KARMHDEAIGVLKEM-ELGGCP 316



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 109/244 (44%), Gaps = 1/244 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G  E A  L+    N   R D  ++S+L+  Y  A   D    + E++ A  ++ + 
Sbjct: 505 ARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHH 564

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
                L+    +     + +  + E+     S + N   +++  YG+ R  +    +   
Sbjct: 565 GLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSL 624

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK   + LS   YN+L+ M + +G  ++   I  ++KSS   +PD +++++MI     +G
Sbjct: 625 MKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSS-GARPDRYSYNTMIYAYGRKG 683

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ EA  +F+EM  +G  P++      ++ Y      ++ +  +  +   G  P++R   
Sbjct: 684 QMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYN 743

Query: 337 CLLN 340
            +L 
Sbjct: 744 SILQ 747



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 51/107 (47%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+ E    +    ++   R D  +++T+I  YG  G       ++ EMK+ G+ P++
Sbjct: 645 SRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDI 704

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           +TYN  + +        +   + + M   G  PN  TY S+L+ Y R
Sbjct: 705 VTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCR 751


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 120/231 (51%), Gaps = 1/231 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G    A  +Y     +  + + + ++ LI  +      +  + +Y EM + G  P +ITY
Sbjct: 453 GRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITY 512

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D + +A++  +  ++ KEM + G  P+  TYASL+R   R +  +  L ++ E+ +
Sbjct: 513 NTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILD 572

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G+Q+ V ++N L+      G  DEAF I+ +MK  +NC P+  T+++++      G + 
Sbjct: 573 AGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMK-EKNCSPNLVTYNTLMDGFYEIGSID 631

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +A +++  +L+ G +P++    + I+      RT + V  LN +   GI P
Sbjct: 632 KAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMP 682



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 113/278 (40%), Gaps = 35/278 (12%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLL 163
           A  L D   N   + D   ++ L+      G F+  + V+E++ +  G  PN+ TY  +L
Sbjct: 212 ALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVML 271

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
           D + +  R  +   ++  M  N    +  TY  L+    R+   +    VY +M + G+ 
Sbjct: 272 DGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLV 331

Query: 224 LSVTLYNTLLAMCADVGYTDEAF----------------------------------EIF 249
           L V++YN+L+    +VG T EA+                                  E+ 
Sbjct: 332 LDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELL 391

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           + +++  +C PD  TF ++I      G  + A  +  +   +G E ++F  +S+I  + K
Sbjct: 392 KQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCK 451

Query: 310 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
             RT D       + + G  P+      L+N   +  K
Sbjct: 452 DGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSK 489



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 3/197 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F TLI      G  +    + E+ +  G + ++ +Y+++++   +  R      +Y
Sbjct: 403 DKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVY 462

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 238
           K M  +G  PN + Y +L+  + R     D + +Y EM   G   ++  YNTL+  +C  
Sbjct: 463 KNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKA 522

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
             Y  EA  + ++M      +PD  T++S+I       KV  A  +++E+L+AG + ++ 
Sbjct: 523 EKY-QEASSLTKEML-ERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVM 580

Query: 299 VLTSLIQCYGKAQRTDD 315
           V   LI     A + D+
Sbjct: 581 VHNILIHGLCSAGKVDE 597



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 81/180 (45%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + PN+ TYN +L ++       +  +++  +   G++P+  TY++L+    +    ++ L
Sbjct: 154 IAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNAL 213

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            +  EM   G+Q     YN LL+ C   G  ++A +++E +       P+  T+  M+  
Sbjct: 214 DLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDG 273

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G+  EA  +++ M+    + +      LI    ++   D   R  + + + G+  D
Sbjct: 274 LCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLD 333



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 63/136 (46%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   V++A  ++D   +   ++D    + LI    +AG  D    +Y EMK     PN++
Sbjct: 556 RDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLV 615

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D         +  +++  + DNGL P+  TY + ++         + + +  E+
Sbjct: 616 TYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEV 675

Query: 218 KEKGMQLSVTLYNTLL 233
              G+  +V  ++ L+
Sbjct: 676 LATGIMPTVITWSILV 691



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG V+ AF +Y   + +    +   ++TL+  +   G+ D   +++  +   G+KP+++T
Sbjct: 592 AGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVT 651

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
           YN  +  +    R  +   +  E+   G+ P   T++ L+RA    +YG
Sbjct: 652 YNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAV--IKYG 698


>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
          Length = 608

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 123/240 (51%), Gaps = 7/240 (2%)

Query: 105 AFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           A  +++   NEK   ++ D   F  +I +Y  AG++     ++ +M   G+  + +T+N+
Sbjct: 231 AEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNS 290

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+      K   +V  IY +M    L P+  +Y+ L++AYG+AR  E+ L+V+ EM + G
Sbjct: 291 LMSFETDYK---EVSNIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAG 347

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +   YN L+   A  G  +EA  +F+ M+     +PD  ++++M+        +  A
Sbjct: 348 VRPTRKSYNILIDAFAISGLVEEAHTVFKAMR-RHRVEPDLCSYTTMVLAYVNASDMDGA 406

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           E  F  + E G +PN+ V  +L++ Y K    + V+R   R+   G+ P+      +++V
Sbjct: 407 EKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDV 466



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 92/186 (49%), Gaps = 1/186 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    + D  ++S LIK YG A   +  L V+EEM   GV+P   +YN L+D   
Sbjct: 304 IYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFA 363

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            +    +  T++K M  + + P+  +Y +++ AY  A   +     +R +KE G++ +V 
Sbjct: 364 ISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVV 423

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +Y TL+   + +   +    ++E M+  +  +P+   +++++ +         A   F E
Sbjct: 424 VYGTLMKGYSKLNNVERVMRVYERMR-MQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKE 482

Query: 288 MLEAGF 293
           M   G+
Sbjct: 483 MEARGY 488



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 103/208 (49%), Gaps = 2/208 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           N+Y++M+   +KP++++Y+ L+   G+A+R  +   +++EM D G+ P   +Y  L+ A+
Sbjct: 303 NIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAF 362

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
             +   E+  +V++ M+   ++  +  Y T++    +    D A + F  +K  +  +P+
Sbjct: 363 AISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIK-EDGLKPN 421

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
              + +++   S    V     ++  M   G EPN  + T+++  +G+     + V    
Sbjct: 422 VVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFK 481

Query: 322 RLPELGITPDDRFCGCLLNVMTQTPKEE 349
            +   G   D +    LL+ + +TP+E+
Sbjct: 482 EMEARGYPADKKAKNILLS-LAKTPEEQ 508



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  L+  YG  G+F     V + M   G KP++I+   L++  GRAK+  + +
Sbjct: 138 WNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAE 197

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVTLYNTLL 233
            +++ M  +G  P+  TY  +L+++      ++  +++ ++   K    +    +++ ++
Sbjct: 198 AVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMI 257

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            M    G   +A ++F  M  SE   P  + TF+S+++  +   +VS    ++++M    
Sbjct: 258 YMYKKAGDYAQARKLFAQM--SERGIPLSTVTFNSLMSFETDYKEVSN---IYDQMQRTA 312

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
            +P++   + LI+ YGKA+R ++ +     + + G+ P  +    L++ 
Sbjct: 313 LKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDA 361



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 86/194 (44%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R  +   D  +++T++  Y  A + DG    +  +K  G+KPN++ 
Sbjct: 365 SGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVV 424

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +     +V  +Y+ M   G+ PN   Y +++  +GR     + +  ++EM+
Sbjct: 425 YGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEME 484

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            +G        N LL++       +EA E+  +       +PD  T+   I       K 
Sbjct: 485 ARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQLEAKPDGTTYGLEINGTGNEYKH 544

Query: 279 SEAEAMFNEMLEAG 292
            + +A  + +L+  
Sbjct: 545 GQNDAGHDSLLDGA 558


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 8/240 (3%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +++T+I   G +G  D  + ++EEMK +G  PN  TYN+LL    R  R  +   +
Sbjct: 169 PNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCL 228

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M D G  P+  TY +++   GR     +   V+ EM+ KG       YNT+L   + 
Sbjct: 229 FVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSK 288

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                 A ++ + MK +  C PD WT++ ++      G  SEA  +F+E+  AG  PNL 
Sbjct: 289 WSRRGRARDLLKTMKRA-GCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLV 347

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPKEELGKLVECV 357
             ++LI  YG+    ++  RA   +   G  P+   +CG    +M       + K++ C+
Sbjct: 348 SFSALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCG----LMNSYSHHGMYKVLCCI 403



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 2/207 (0%)

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
           T+I + G  G       ++E M   GV P++  Y  LL    +     +   +++ M + 
Sbjct: 35  TIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEK 94

Query: 186 GLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
           G SPN  TY +L+ A  +  Y   D + ++ EMK+ G+Q +   YN ++  C  +   D 
Sbjct: 95  GCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDT 154

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A +I ++MK+  NC P+  ++++MI      G++ EA  +F EM E G  PN +   SL+
Sbjct: 155 ASQILKEMKAV-NCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLL 213

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
           + Y +  R +  +     + + G  PD
Sbjct: 214 KAYAREGRYEKAMCLFVGMEDEGCIPD 240



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 37/270 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G + +A  +++           +A++ L+  Y   G       ++E MK  G  PN++
Sbjct: 42  REGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVL 101

Query: 158 TYNNLLDT-MGRAKRPWQVKTIYKEMTDNGLSPN---WN--------------------- 192
           TYN L++    RA R   +  +++EM   G+ PN   +N                     
Sbjct: 102 TYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKE 161

Query: 193 -----------TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
                      +Y +++ + GR+   ++ + ++ EMKE G   +   YN+LL   A  G 
Sbjct: 162 MKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGR 221

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A  +F  M+  E C PD +T++++I +C   G  +EAE +F EM   G  P+     
Sbjct: 222 YEKAMCLFVGME-DEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYN 280

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +++  Y K  R       L  +   G TPD
Sbjct: 281 TMLDAYSKWSRRGRARDLLKTMKRAGCTPD 310



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 13/216 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G ++ A  L++  +      +   +++L+K Y   G ++  + ++  M+  G  P++ 
Sbjct: 183 RSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLY 242

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY------GRARYGEDTL 211
           TYN ++D  GR     + + ++ EM   G +P+  TY ++L AY      GRAR      
Sbjct: 243 TYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRAR------ 296

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            + + MK  G    +  YN LL      G   EA +IF ++K++ +  P+  +FS++I +
Sbjct: 297 DLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGH-SPNLVSFSALINM 355

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
               G   EAE  + EM   G  PN      L+  Y
Sbjct: 356 YGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSY 391



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 2/177 (1%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           K+Y  R G  E A  L+    +E    D   ++T+I + G  G F     V+ EM+  G 
Sbjct: 214 KAY-AREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGC 272

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            P+ +TYN +LD   +  R  + + + K M   G +P+  TY  LL A G+A    + + 
Sbjct: 273 TPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQ 332

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           ++ E+K  G   ++  ++ L+ M   +GY +EA   + +M+++  C P++  +  ++
Sbjct: 333 IFHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRAT-GCVPNATAYCGLM 388



 Score = 38.9 bits (89), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 30/183 (16%)

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A ++F  ++     +       ++I+I    GK+  A  +F  M +AG  P++  
Sbjct: 8   GARRQALQVFRFLQEHLEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHA 67

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
            T+L+  Y K     +       + E G +P         NV+T         L+    K
Sbjct: 68  YTALLSGYAKQGLLKEAWALFEAMKEKGCSP---------NVLTYNT------LINACTK 112

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 419
              +L  +V L  E         K+A    N I+        NC+++ CV L+L + A +
Sbjct: 113 RAYRLPDLVGLFEE--------MKQAGVQPNDITY-------NCMVNACVCLSLFDTASQ 157

Query: 420 LLE 422
           +L+
Sbjct: 158 ILK 160


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  ++D    E    D  +++TL+  Y  AG     L V+ EM   GV P+++
Sbjct: 237 KAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVV 296

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+  M RA    +   +  +M + GL  N  T+ +L+  + R  + +D L   +EM
Sbjct: 297 TFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEM 356

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E  +Q SV  YN L+     +G  DEA E+  +M+ ++  +PD  T+S++++     G 
Sbjct: 357 RECRIQPSVVCYNVLINGYCKLGRMDEARELIHEME-AKGMKPDVVTYSTILSGYCKIGD 415

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              A  +  +ML+ G  P+    +SLI+   + +R  D      ++ +LG+ PD+
Sbjct: 416 TDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDE 470



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 117/235 (49%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGN+E A  L  + R    R++   F+ LI  +   G  D  L   +EM+   ++P+++
Sbjct: 307 RAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVV 366

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L++   +  R  + + +  EM   G+ P+  TY+++L  Y +    +    + R+M
Sbjct: 367 CYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKM 426

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG+      Y++L+    +     +A E+FE M      QPD +T++++I      G 
Sbjct: 427 LKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQL-GLQPDEFTYTTLIDGHCKEGN 485

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           V +A ++ +EM++ G  P++   + LI    K+ RT +  R L +L      PD+
Sbjct: 486 VQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDN 540



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 114/234 (48%), Gaps = 4/234 (1%)

Query: 100 GNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G  E A G+  D  R      +   ++TL+  +  AG  D    +   M+  GV+P+++T
Sbjct: 168 GQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVT 227

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N +++ + +A R    + ++ EM   GL+P+  +Y +L+  Y +A    + L+V+ EM 
Sbjct: 228 FNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMA 287

Query: 219 EKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +KG+   V  + +L+ AMC   G  + A  +   M+     + + +TF+++I      G 
Sbjct: 288 QKGVVPDVVTFTSLIHAMC-RAGNLERAVALVGQMR-ERGLRMNEFTFTALIDGFCRNGF 345

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +A     EM E   +P++     LI  Y K  R D+    ++ +   G+ PD
Sbjct: 346 LDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPD 399



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 4/215 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVY-EEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           + PN ++   L++     G  +  L V  ++M+  G  PN++TYN L+    RA      
Sbjct: 150 VAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAA 209

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + +   M + G+ P+  T+ +++    +A   ED   ++ EM  +G+      YNTL++ 
Sbjct: 210 ERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSG 269

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G   EA  +F +M + +   PD  TF+S+I      G +  A A+  +M E G   
Sbjct: 270 YCKAGCLHEALAVFAEM-AQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRM 328

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           N F  T+LI  + +    DD + A+  + E  I P
Sbjct: 329 NEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQP 363



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 112/234 (47%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V+ A  L    R    R     F+T++     AG  +    +++EM   G+ P+ +
Sbjct: 202 RAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGV 261

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN L+    +A    +   ++ EM   G+ P+  T+ SL+ A  RA   E  +++  +M
Sbjct: 262 SYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQM 321

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G++++   +  L+      G+ D+A    ++M+     QP    ++ +I      G+
Sbjct: 322 RERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECR-IQPSVVCYNVLINGYCKLGR 380

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + EA  + +EM   G +P++   ++++  Y K   TD       ++ + G+ PD
Sbjct: 381 MDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPD 434



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 95/179 (53%), Gaps = 2/179 (1%)

Query: 151 GVKPNMITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           GV PN+ TYN L+  +  R +R   +  +  +M   G +PN  TY +L+ A+ RA   + 
Sbjct: 149 GVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDA 208

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
              +   M+E G++ S+  +NT++      G  ++A ++F++M + E   PD  ++++++
Sbjct: 209 AERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEM-AREGLTPDGVSYNTLV 267

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +     G + EA A+F EM + G  P++   TSLI    +A   +  V  + ++ E G+
Sbjct: 268 SGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGL 326



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 118/252 (46%), Gaps = 22/252 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  L      +  + D   +ST++  Y   G+ D    +  +M   GV P+ I
Sbjct: 377 KLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAI 436

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+  +   +R      ++++M   GL P+  TY +L+  + +    +  LS++ EM
Sbjct: 437 TYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEM 496

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC----- 272
            +KG+   V  Y+ L+   +    T EA  +   +   E+  PD+  + +++  C     
Sbjct: 497 IKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL-YYEDPVPDNIKYEALMHCCRTAEF 555

Query: 273 ----------SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN- 321
                     S +G +++A+ ++  ML+  ++ +  V + LI  +    R  ++++AL+ 
Sbjct: 556 KSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGH---CRGGNIMKALSF 612

Query: 322 --RLPELGITPD 331
             +L   G +P+
Sbjct: 613 HKQLLRCGFSPN 624



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 36/181 (19%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  P+++ YN +L  +  A  P   + +   M  +G++PN  TY  L+RA          
Sbjct: 115 GYAPSLLAYNAVLLALSDASLP-SARRLLASMLRDGVAPNVYTYNILVRA---------- 163

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
                                   +CA  G  +EA  +  D      C P+  T+++++ 
Sbjct: 164 ------------------------LCAR-GQREEALGVVGDDMRGAGCAPNVVTYNTLVA 198

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G+V  AE +   M E G  P+L    +++    KA R +D  +  + +   G+TP
Sbjct: 199 AFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTP 258

Query: 331 D 331
           D
Sbjct: 259 D 259


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 154/334 (46%), Gaps = 24/334 (7%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ + + Y  +G     +N +E+M+  G+K     +N LLDT+ ++++    + ++ +M 
Sbjct: 184 FALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMK 243

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
                P+  +Y  LL  +G+ +       VYREMK++G +  V  Y  L+     V   D
Sbjct: 244 IRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYD 303

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A E+F +M+ S+NCQP    F ++I       ++SEA   F     +GF P      ++
Sbjct: 304 DAIELFREME-SKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAV 362

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--------EELGKLVE 355
           +  Y  + R DD  R ++ + + G+ P+ R    +L+ + +  K        E++    E
Sbjct: 363 VGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEE 422

Query: 356 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKA--YCNCLIDLCVNLN 412
           C E + S    +V++      +E      A ++++ + +K V       + LI+   + N
Sbjct: 423 C-EPTVSTYDIIVRMFCNMDKVES-----AIKVWDRMKAKGVHPGMHMFSILINSLCHEN 476

Query: 413 LLENACKLLELGLTLEVYTDIQSRSPTQWSLHLK 446
            L+ ACK  +  L      D+  R P     HLK
Sbjct: 477 KLDIACKYFQEML------DVGIRPPAALFSHLK 504



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 101/223 (45%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +Y   ++E +  D   +  LI  Y     +D  + ++ EM++   +P+   +  L++ +G
Sbjct: 273 VYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGLG 332

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
             +R  +    ++    +G +P   TY +++ AY  +   +D   +  EM++ G+  +  
Sbjct: 333 SVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSR 392

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y+ +L        T EAF +FE M S E C+P   T+  ++ +     KV  A  +++ 
Sbjct: 393 TYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKVWDR 452

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           M   G  P + + + LI       + D   +    + ++GI P
Sbjct: 453 MKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRP 495



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 2/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+    ++  +  P+ F TLI   G+       L  +   KA G  P   TYN ++ 
Sbjct: 305 AIELFREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVG 364

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK-EKGMQ 223
               + R      +  EM  +G+ PN  TY  +L    +A    +  SV+ +M  E+  +
Sbjct: 365 AYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECE 424

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
            +V+ Y+ ++ M  ++   + A ++++ MK+ +   P    FS +I       K+  A  
Sbjct: 425 PTVSTYDIIVRMFCNMDKVESAIKVWDRMKA-KGVHPGMHMFSILINSLCHENKLDIACK 483

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            F EML+ G  P   + + L Q   +  R D VV    ++ +L  TP
Sbjct: 484 YFQEMLDVGIRPPAALFSHLKQALIEDGRKDTVVLLAQKIDKLRKTP 530



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 3/224 (1%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           +++ P     ++K    AG        + E K  G   N  +YN L+D++G+ K+   + 
Sbjct: 109 FKVSPALVLEVLKRLSNAGALALSFFKWAE-KQKGFMYNTESYNALIDSLGKIKQFNMIW 167

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  +M   G+     T+A + R Y R+   ++ ++ + +M++ G+++  T +N LL   
Sbjct: 168 NLVNDMKRKGVLTK-ETFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTL 226

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                   A  +F+ MK      PD  +++ ++        + + + ++ EM + GFEP+
Sbjct: 227 IKSRQVLSAQNVFDKMKIRRFV-PDIKSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPD 285

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           +     LI  Y K ++ DD +     +      P       L+N
Sbjct: 286 VVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLIN 329


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 116/214 (54%), Gaps = 2/214 (0%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           I P   S ++K+ G A   +  L+++ ++K    KP   TYN+++  + +     +V  +
Sbjct: 157 IGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHEL 216

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           Y EM + G   P+  TY++L+ A+G+    +  +S++ EMKE G+  +  +Y T+L +  
Sbjct: 217 YNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYF 276

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            +G  ++A  + ++MK  + C    +T++ +I      GKV EA ++F  ML+ G +P++
Sbjct: 277 KLGRVEKALGLVQEMK-EKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDV 335

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ +LI   GKA R  D ++    +  L  TP+
Sbjct: 336 VLINNLINLLGKAGRLADAIKLFEEMESLQCTPN 369



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 144/309 (46%), Gaps = 14/309 (4%)

Query: 100 GNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G+ E    LY+   NE   + D   +S LI  +G  G  D  +++++EMK  G+ P    
Sbjct: 208 GHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKI 267

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  +L    +  R  +   + +EM + G +    TY  L++  G+A   E+  S++  M 
Sbjct: 268 YTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNML 327

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGK 277
           ++G +  V L N L+ +    G   +A ++FE+M+S + C P+  T++++I  +   + +
Sbjct: 328 KEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ-CTPNVVTYNTVIKALFESKAR 386

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            SEA   + +M E G  P+ F  + LI  + K  R +  +  L  + E G  P       
Sbjct: 387 ASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCS 446

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGY----VVKLLLEEQDIEGDFKKEATELFNSIS 393
           L+N + +  + E     E  ++     GY    V  ++++     G    EA +LFN   
Sbjct: 447 LINALGKAKRYEAAN--ELFQELRENCGYSSARVYAVMIKHLGKCGRL-SEAVDLFN--- 500

Query: 394 KDVKKAYCN 402
            ++KK  CN
Sbjct: 501 -EMKKLGCN 508



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 2/216 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L+D  +          ++T++ +Y   G  +  L + +EMK  G    + 
Sbjct: 242 KLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVY 301

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +G+A +  +  +I+  M   G  P+     +L+   G+A    D + ++ EM
Sbjct: 302 TYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEM 361

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +      +V  YNT++ A+        EAF  +E MK +    P S+T+S +I       
Sbjct: 362 ESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN-GVVPSSFTYSILIDGFCKTN 420

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           +V +A  +  EM E GF P      SLI   GKA+R
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKR 456



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   E A  L+   R          ++ +IK  G  G     ++++ EMK +G  P++ 
Sbjct: 453 KAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVY 512

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+  M R     +  ++ + M +NG +P+ N++  +L  + R    +  + ++  M
Sbjct: 513 AYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRM 572

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K   ++  V  YNT+L   +  G  +EA ++ ++M +S+  + D  T+SS   I    GK
Sbjct: 573 KNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEM-NSKGFEYDLITYSS---ILEAVGK 628

Query: 278 VSE 280
           + E
Sbjct: 629 IDE 631



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF  Y++ +          +S LI  +      +  L + EEM   G  P    Y +L++
Sbjct: 390 AFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLIN 449

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G+AKR      +++E+ +N    +   YA +++  G+     + + ++ EMK+ G   
Sbjct: 450 ALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNP 509

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            V  YN L++    VG TDEA  +   M+ +  C PD  + + ++   +  G    A  M
Sbjct: 510 DVYAYNALMSGMVRVGMTDEAHSLLRTMEEN-GCTPDLNSHNIILNGFARTGGPKGAIEM 568

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           F  M  +  +P++    +++ C  +A   ++  + +  +   G   D
Sbjct: 569 FTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYD 615



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 12/183 (6%)

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           LD  G     W  KTI +EM  +         + +++  G+A+     LS++ ++K +  
Sbjct: 134 LDEAGMLGEMW--KTI-QEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKC 190

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           + +   YN+++ M    G+ ++  E++ +M +  +C PD+ T+S++I      G+   A 
Sbjct: 191 KPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAI 250

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           ++F+EM E G  P   + T+++  Y K  R +           LG+  + +  GC L V 
Sbjct: 251 SLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKA---------LGLVQEMKEKGCALTVY 301

Query: 343 TQT 345
           T T
Sbjct: 302 TYT 304


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 136/284 (47%), Gaps = 34/284 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  ++D    E    D  +++TL+  Y  AG     L+V+ EM   G+ P+++
Sbjct: 272 KAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVV 331

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+  M +A    +  T+ ++M + GL  N  T+ +L+  + +  + +D L   R M
Sbjct: 332 TFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 391

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-----------------ENCQ- 259
           K+  ++ SV  YN L+     VG  DEA E+  +M++                  +NC  
Sbjct: 392 KQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDT 451

Query: 260 ----------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                           PD+ T+SS+I +     ++S+A  +F  M++ G +P+ F  TSL
Sbjct: 452 HSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSL 511

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           I  + K    +  +   +++ + G+ PD      L+N ++++ +
Sbjct: 512 IDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 555



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 3/213 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TL+  +  AG  DG   +   M+  G+KPN++T+N++++ M +A +    + +
Sbjct: 223 PNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKV 282

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + EM   GL+P+  +Y +L+  Y +A    + LSV+ EM +KG+   V  + +L+ +   
Sbjct: 283 FDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCK 342

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  + A  +   M+     Q +  TF+++I     +G + +A      M +   +P++ 
Sbjct: 343 AGNLERAVTLVRQMR-ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVV 401

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +LI  Y    R D+    L+ +   G+ PD
Sbjct: 402 CYNALINGYCMVGRMDEARELLHEMEAKGLKPD 434



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 3/214 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN ++   L++     G+    L++  +M+  G  PN++TYN L+    RA      +
Sbjct: 186 VAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAE 245

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +   M + GL PN  T+ S++    +A   ED   V+ EM  +G+      YNTL+   
Sbjct: 246 RLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGY 305

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G + EA  +F +M + +   PD  TF+S+I +    G +  A  +  +M E G + N
Sbjct: 306 CKAGCSHEALSVFAEM-TQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMN 364

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               T+LI  + K    DD + A+  + +  I P
Sbjct: 365 EVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKP 398



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 113/227 (49%), Gaps = 3/227 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+E A  L  + R    +++   F+ LI  +   G  D  L     MK   +KP+++
Sbjct: 342 KAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVV 401

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L++      R  + + +  EM   GL P+  TY++++ AY +         + ++M
Sbjct: 402 CYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQM 461

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            EKG+      Y++L+  +C +   +D A  +F++M      QPD +T++S+I      G
Sbjct: 462 LEKGVLPDAITYSSLIRVLCGEKRLSD-AHVLFKNM-IKLGLQPDEFTYTSLIDGHCKEG 519

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            V  A ++ ++M++AG  P++   + LI    K+ R  +  + L +L
Sbjct: 520 NVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 566



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 97/186 (52%), Gaps = 3/186 (1%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           ++ M + GV PN+ TYN L+  + GR  R  +  +I ++M   G  PN  TY +L+ A+ 
Sbjct: 178 FDSMLSDGVAPNVYTYNILVRALCGRGHRK-EALSILRDMRGAGCGPNVVTYNTLVAAFF 236

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           RA   +    +   M+E G++ ++  +N+++      G  ++A ++F++M   E   PD 
Sbjct: 237 RAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEM-VREGLAPDG 295

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            ++++++      G   EA ++F EM + G  P++   TSLI    KA   +  V  + +
Sbjct: 296 VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQ 355

Query: 323 LPELGI 328
           + E G+
Sbjct: 356 MRERGL 361



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 28/211 (13%)

Query: 116 KWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  + P+ F+  +LI  +   GN +  L+++++M   GV P+++TY+ L++ + ++ R  
Sbjct: 498 KLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAM 557

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           + + +  ++      P    Y +L+    +A   +  L++ +    KG+           
Sbjct: 558 EAQQLLFKLYHEDPIPANTKYDALMHCCRKAEL-KSVLALLKGFCMKGLM---------- 606

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAG 292
                    +EA ++++ M    N   D   +S +I    CR G V +A +   +ML+ G
Sbjct: 607 ---------NEADKVYQSML-DRNWNLDGSVYSVLIH-GHCRAGNVMKALSFHKQMLQGG 655

Query: 293 FEPNLFVLTSLIQCY---GKAQRTDDVVRAL 320
           F PN     SLI+     G     D V++ L
Sbjct: 656 FAPNSTSTISLIRGLFENGMVVEADQVIQQL 686


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 126/242 (52%), Gaps = 6/242 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A+ST+I  +   G      +++ EM   GVKP+++TYN ++D + +A+   + + + 
Sbjct: 264 DVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVL 323

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++MT +G  P+  TY+ ++  Y      ++   ++REMK++G+  ++   N+ LA     
Sbjct: 324 RQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKH 383

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G + EA E F+ M +++  +PD +++ +++   +  G  ++   +FN M   G   N  V
Sbjct: 384 GRSKEAAEFFDSM-TAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHV 442

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
            T LI  Y K    DD +     + + G++PD      +++  ++     +G+L + +EK
Sbjct: 443 FTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSR-----MGRLTDAMEK 497

Query: 360 SN 361
            N
Sbjct: 498 FN 499



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 121/274 (44%), Gaps = 8/274 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V  A  ++D A +   R     F++LI  Y   G  D    + + M+ +GV+P+++TY
Sbjct: 560 GRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTY 619

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LLD   +  R     T+++EM   G+ PN  TY  +L    RA         + EM E
Sbjct: 620 NTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIE 679

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G  ++V++Y  +L         DEA  +F+ +  + N +      ++MI       +  
Sbjct: 680 SGTTVTVSIYGIILGGLCRNNCADEAIILFQKL-GTMNVKFSITILNTMINAMYKVQRKE 738

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA+ +F  +  +G  PN      +I    K    +D     + + + GI P  R    ++
Sbjct: 739 EAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRII 798

Query: 340 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 373
            ++ +  K E+ K    + K + K     ++LLE
Sbjct: 799 RMLLE--KGEIAKAGNYLSKVDGK-----RILLE 825



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 108/235 (45%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A   +D    +  + D  ++ TL+  Y + G F   + ++  MK+ G+  N  
Sbjct: 382 KHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCH 441

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  L+    +         I+ EM   G+SP+  TY++++  + R     D +  + +M
Sbjct: 442 VFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQM 501

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             +G+Q +  +Y++++   C   G   +A E+  +M +    +PD   FSS+I      G
Sbjct: 502 VARGIQPNTAVYSSIIQGFCMHGGLV-KAKELVSEMINKGIPRPDIVFFSSVINSLCKDG 560

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +V +A  +F+   + G  P +    SLI  Y    + D   + L+ +  +G+ PD
Sbjct: 561 RVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPD 615



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 131/298 (43%), Gaps = 3/298 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A  ++   + +    D   +ST+I  +   G     +  + +M A G++PN  
Sbjct: 452 KRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTA 511

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            Y++++          + K +  EM + G+  P+   ++S++ +  +     D   ++  
Sbjct: 512 VYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDL 571

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             + G +  V  +N+L+     VG  D+AF+I + M+     +PD  T+++++      G
Sbjct: 572 ATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVV-GVEPDIVTYNTLLDGYFKNG 630

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++++   +F EM   G +PN      ++    +A RT    +  + + E G T      G
Sbjct: 631 RINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYG 690

Query: 337 CLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
            +L  + +    +E   L + +   N K    +   +     +   K+EA ELF +IS
Sbjct: 691 IILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATIS 748



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 112/263 (42%), Gaps = 17/263 (6%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P   TYN L+D   RA+RP     ++  +   GL  +  T  +LL+    A   E+ ++V
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214

Query: 214 Y-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITI 271
               M E G   +   Y+ +L    D   +  A ++ + M K    C PD   +S++I  
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G+  +A ++F+EM   G +P++     +I    KA+  D     L ++   G  PD
Sbjct: 275 FFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPD 334

Query: 332 DRFCGCLLNVMTQTPKEELGKLVECVE--KSNSKLGYVVKLLLEEQDIEGDFK----KEA 385
                C+++         LG+L E  +  +   K G +  ++     +    K    KEA
Sbjct: 335 TVTYSCMIH-----GYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEA 389

Query: 386 TELFNSISKDVKK----AYCNCL 404
            E F+S++    K    +YC  L
Sbjct: 390 AEFFDSMTAKGHKPDIFSYCTLL 412



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 126/285 (44%), Gaps = 15/285 (5%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKRPWQV 175
           I PN   +S++I+ +   G       +  EM   G+ +P+++ ++++++++ +  R    
Sbjct: 506 IQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDA 565

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             I+   TD G  P   T+ SL+  Y      +    +   M+  G++  +  YNTLL  
Sbjct: 566 HDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDG 625

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  ++   +F +M+  +  +P++ T+  M+      G+   A   F+EM+E+G   
Sbjct: 626 YFKNGRINDGLTLFREMQ-RKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTV 684

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP-KEELGKLV 354
            + +   ++    +    D+ +    +L  + +         ++N M +   KEE  +L 
Sbjct: 685 TVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELF 744

Query: 355 ECVEKSN-----SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
             +  S      S  G ++  LL++  +E     +A  +F+S+ K
Sbjct: 745 ATISASGLLPNESTYGVMIINLLKDGGVE-----DANNMFSSMEK 784


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 133/261 (50%), Gaps = 3/261 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A+ LY++  +     +   +++LI+ +   G  +    +Y EM  +G  P+++
Sbjct: 491 RHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLL 550

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + +++E+ + G  P+  +Y  L+    +A +  +   ++  M
Sbjct: 551 LLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTM 610

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G  L    YNT++      G  ++A+++ E+MK+  + +P   T+ S+I   +   +
Sbjct: 611 KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH-EPTVVTYGSVIDGLAKIDR 669

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F E    G E N+ + +SLI  +GK  R D+    +  L + G+TP+     C
Sbjct: 670 LDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 729

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           LL+ + +   EE+ + + C +
Sbjct: 730 LLDALVKA--EEISEALVCFQ 748



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 133/297 (44%), Gaps = 3/297 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G V+ A  L D  ++     D   ++  I  +G AG  D     + EMKA G+  + 
Sbjct: 246 AREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDD 305

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++  + +A R  +   +++ M  N   P    Y +++  YG A   ED  S+   
Sbjct: 306 VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + KG   SV  YN +L+     G  DEA + FE+MK  ++  P+  T++ MI +    G
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK--KDAIPNLSTYNIMIDMLCKAG 423

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 335
           K+  A  + + M +AG  PN+  +  ++    KAQR DD       L      PD   +C
Sbjct: 424 KLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYC 483

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
             +  +      +E  KL E +  +N     VV   L     +   K++  +++N +
Sbjct: 484 SLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEM 540



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 115/236 (48%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG    A+ L+   + +   +D  A++T+I  +  +G  +    + EEMK  G +P +
Sbjct: 595 VKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTV 654

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   +  E
Sbjct: 655 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEE 714

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCR 275
           + +KG+  +V  +N LL          EA   F+ MK  + C P+  T+S +I  +C  R
Sbjct: 715 LMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLK-CTPNYITYSILIHGLCKIR 773

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + EM + GF+PN+F  T++I    KA    +      +  E G   D
Sbjct: 774 -KFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVAD 828



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 94/183 (51%), Gaps = 1/183 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A+++   ++   +S+LI  +G  G  D    + EE+   G+ PN+ T+N LLD
Sbjct: 673 AYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 732

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M D   +PN+ TY+ L+    + R        ++EM+++G + 
Sbjct: 733 ALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKP 792

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  Y T+++  A  G   EA  +FE  K       DS  ++++I   S   + S+A  +
Sbjct: 793 NVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGV-ADSAIYNAIIEGLSNANRASDAYRL 851

Query: 285 FNE 287
           F E
Sbjct: 852 FEE 854



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 112/250 (44%), Gaps = 2/250 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF      R  K+R   +A++ LI    T+ + D  L ++++M+ +G   N+  +  L+ 
Sbjct: 184 AFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR 243

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R  R     ++  EM  N L P+   Y   +  +G+A   +     + EMK  G+ L
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVL 303

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               Y +++ +       +EA E+FE M  ++   P ++ +++MI      GK  +A ++
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV-PCAYAYNTMIMGYGMAGKFEDAYSL 362

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
                  G  P++     ++ C G+  + D+ ++    + +  I P+      +++++ +
Sbjct: 363 LERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCK 421

Query: 345 TPKEELGKLV 354
             K E   +V
Sbjct: 422 AGKLETALVV 431



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A+++L+ +      F+    + EEM   G  P+  T   ++ +  ++++  +  T  + M
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                 P ++ Y +L+ A   +R  +  L+++++M+E G  ++V L+ TL+ + A  G  
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A  + ++MKS+ + +PD   ++  I      GKV  A   F+EM   G   +    TS
Sbjct: 252 DAALSLLDEMKSN-SLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTS 310

Query: 303 LIQCYGKAQRTDDVVRALNRLPE 325
           +I    KA R ++ V     + +
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQ 333



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN ++   L+     A      L  ++ MK +   PN ITY+ L+  + + ++  +  
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             ++EM   G  PN  TY +++    +A    +  +++ + KEKG      +YN ++   
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGL 839

Query: 237 ADVGYTDEAFEIFEDMK 253
           ++     +A+ +FE+ +
Sbjct: 840 SNANRASDAYRLFEEAR 856



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 121 PNAFSTLIKLYGTAG--NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +  I ++G      F+     ++EM+  G KPN+ TY  ++  + +A    +  T+
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTL 816

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +++  + G   +   Y +++     A    D   ++ E + KG
Sbjct: 817 FEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKG 859


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 182/428 (42%), Gaps = 55/428 (12%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G++  A G++ +   ++ R  PNA  +S L+ LYG  G +D    ++ EMK    +P++ 
Sbjct: 332 GDIRHAMGVFRQM--QEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVG 389

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++  G      +V T++ +M +  + PN  TY  L+ A G+    ED   +   M
Sbjct: 390 TYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHM 449

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+  S   Y  ++         +EA  +F  M      +P   T++S+I + +  G 
Sbjct: 450 DEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEM-GSKPTVETYNSLINMFARGGL 508

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             E+EA+  +M E+G   +      +I+ Y +  + ++ ++    L +    PD+R    
Sbjct: 509 YKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEA 568

Query: 338 LLNV-----MTQTPKEELGK--------------------------------LVECVEKS 360
           +L+V     +    +E+  +                                L E V   
Sbjct: 569 VLSVYCTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNK 628

Query: 361 NSKLGYVVKLLLEE--------QDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 412
            S +  VV  +++         Q +E  F K      NS    +   + N L++    L 
Sbjct: 629 VSNIHQVVGKMMKGDYDDYSNWQMVEYVFDK-----LNSEGCGLGMRFYNTLLEALWWLG 683

Query: 413 LLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGE 472
             E A ++L   +   ++ ++  +S   WS+ +  +  G A TA+ +W+N++ +    GE
Sbjct: 684 QKERAARVLSEAIKRGLFPELFRKSKLVWSVDVHRMWEGGACTAISVWLNNMHEMFLKGE 743

Query: 473 EFPPLLGI 480
           + P +  +
Sbjct: 744 DLPHVASV 751



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 2/238 (0%)

Query: 97  TRAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
            R G N E    L+   R+E  + D   ++TL+      G  D    V+  M   G+ P+
Sbjct: 223 ARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPD 282

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY NL++T G+  +  +V  + KEM  +G  P+ ++Y  LL AY         + V+R
Sbjct: 283 ITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFR 342

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M+E     +   Y+ LL +    G  D+  E+F +MK S N +PD  T++ +I +    
Sbjct: 343 QMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVS-NTEPDVGTYNVLIEVFGEG 401

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           G   E   +F++M+E   EPN+     LI   GK    +D  + L  + E GI P  +
Sbjct: 402 GYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTK 459



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           K ++  N F+ + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 101 KNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEK 160

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
              I++EM  +G+  +  +Y +L+ +YGR    E +L +   MK++ +  S+  YNT++ 
Sbjct: 161 STEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVIN 220

Query: 235 MCADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            CA  G   E    +F +M+  E  QPD  T+++++  C+ RG   EAE +F  M E G 
Sbjct: 221 SCARGGLNWEGLLSLFAEMR-HEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGM 279

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            P++    +L++ +GK  + + V   L  +   G  PD
Sbjct: 280 VPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPD 317


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 135/271 (49%), Gaps = 8/271 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+VE A GL++  +      D   ++++I  +G  G  D  +  +EEMK +  +P++I
Sbjct: 142 KEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI 201

Query: 158 TYNNLLDTMGR-AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN L++   +  K P  ++  Y+EM  NGL PN  +Y++L+ A+ +    +  +  Y +
Sbjct: 202 TYNALINCFCKFGKLPIGLE-FYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVD 260

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+  G+  +   Y +L+     +G   +AF +  +M      + +  T++++I       
Sbjct: 261 MRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQV-GVEWNVVTYTALIDGLCDAE 319

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ EAE +F +M  AG  PNL    +LI  + KA+  D  +  LN L   GI PD    G
Sbjct: 320 RMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG 379

Query: 337 CLLNVMTQTPKEELGKLV-----ECVEKSNS 362
             +  +    K E  K+V     EC  K+NS
Sbjct: 380 TFIWGLCSLEKIEAAKVVMNEMKECGIKANS 410



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 112 ARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           ++ +++R+ P   S   L+  +   G  D     +++M   G +P + TYN ++D M + 
Sbjct: 84  SKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKE 143

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
                 + +++EM   GL P+  TY S++  +G+    +DT+  + EMK+   +  V  Y
Sbjct: 144 GDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITY 203

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N L+      G      E + +MK +   +P+  ++S+++      G + +A   + +M 
Sbjct: 204 NALINCFCKFGKLPIGLEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 262

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             G  PN +  TSLI    K     D  R  N + ++G+
Sbjct: 263 RVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 301



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 143/331 (43%), Gaps = 8/331 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++     ++  ++     D   ++ LI  +   G     L  Y EMK  G+KPN++
Sbjct: 177 KVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVV 236

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+ L+D   +     Q    Y +M   GL PN  TY SL+ A  +     D   +  EM
Sbjct: 237 SYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEM 296

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G++ +V  Y  L+    D     EA E+F  M ++    P+  +++++I        
Sbjct: 297 LQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTA-GVIPNLASYNALIHGFVKAKN 355

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  + NE+   G +P+L +  + I      ++ +     +N + E GI  +      
Sbjct: 356 MDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTT 415

Query: 338 LLNVMTQT--PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           L++   ++  P E L  L++ +++ + ++  V   +L +   +     +A + FN IS D
Sbjct: 416 LMDAYFKSGNPTEGL-HLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISND 474

Query: 396 ----VKKAYCNCLIDLCVNLNLLENACKLLE 422
                  A    +ID     N +E A  L E
Sbjct: 475 FGLQANAAIFTAMIDGLCKDNQVEAATTLFE 505



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 7/210 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           FS LI L    G  +  +  + +MK   V P   + N LL    +  +   VK  +K+M 
Sbjct: 67  FSVLIDL----GMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 122

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G  P   TY  ++    +    E    ++ EMK +G+      YN+++     VG  D
Sbjct: 123 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 182

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           +    FE+MK    C+PD  T++++I  C C+ GK+      + EM   G +PN+   ++
Sbjct: 183 DTVCFFEEMKDM-CCEPDVITYNALIN-CFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 240

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           L+  + K       ++    +  +G+ P++
Sbjct: 241 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNE 270



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 7/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R    E  FG  D A      + PN  +++ LI  +  A N D  L +  E+K  G+KP+
Sbjct: 320 RMKEAEELFGKMDTAG-----VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 374

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ Y   +  +   ++    K +  EM + G+  N   Y +L+ AY ++    + L +  
Sbjct: 375 LLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLD 434

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMKE  ++++V  +  L+          +A + F  + +    Q ++  F++MI      
Sbjct: 435 EMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 494

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +V  A  +F +M++ G  P+    TSL+    K     + +   +++ E+G+  D
Sbjct: 495 NQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLD 550



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 79/220 (35%), Gaps = 51/220 (23%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--------------- 226
           MT NG   +  +Y  +      AR   D  SV +EM        V               
Sbjct: 1   MTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGF 60

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMK------SSENC---------------------- 258
            +++ L ++  D+G  +EA + F  MK       + +C                      
Sbjct: 61  GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKD 120

Query: 259 ------QPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
                 +P  +T++ MI  C C+ G V  A  +F EM   G  P+     S+I  +GK  
Sbjct: 121 MIGAGARPTVFTYNIMID-CMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 179

Query: 312 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
           R DD V     + ++   PD      L+N   +  K  +G
Sbjct: 180 RLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 219



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 1/111 (0%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G++ N   +  ++D + +  +     T++++M   GL P+   Y SL+    +     + 
Sbjct: 476 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 535

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           L++  +M E GM+L +  Y +L+   +      +A    E+M   E   PD
Sbjct: 536 LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM-IGEGIHPD 585


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 130/266 (48%), Gaps = 5/266 (1%)

Query: 80  VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 139
           + P++ RA     K Y  R G+++ A  + D         D   +S L+  Y  AG ++ 
Sbjct: 295 IKPRT-RAYNALLKGY-VRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWES 352

Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLL 198
              + +EM+A GVKP+   ++ +L    R +  WQ    + +EM  +G+ P+ + Y  ++
Sbjct: 353 ARILLKEMEADGVKPSSYVFSRILAGF-RDRGDWQKAFAVLREMQASGVRPDRHFYNVMI 411

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             +G+       +  + +M+E+G++  V  +NTL+      G  D A E+FE+M+ S NC
Sbjct: 412 DTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRES-NC 470

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            P + T++ MI +   +      EAM +EM E G  PN+   T+L+  YG++ R  + + 
Sbjct: 471 PPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAID 530

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQ 344
            +  +   G+ P       L+N   Q
Sbjct: 531 CIEAMKADGLKPSPTMYHALVNAYAQ 556



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 122/261 (46%), Gaps = 11/261 (4%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G  P SY++        S++     D   G+ + AF +    +    R D + ++ +I  
Sbjct: 364 GVKPSSYVF--------SRILAGFRDR--GDWQKAFAVLREMQASGVRPDRHFYNVMIDT 413

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +G        ++ + +M+  G++P+++T+N L+D   +  R  +   +++EM ++   P 
Sbjct: 414 FGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPG 473

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY  ++   G   + E   ++  EMKE+G+  ++  Y TL+ +    G   EA +  E
Sbjct: 474 TTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIE 533

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            MK ++  +P    + +++   + RG    A  +   M   G E ++ VL SLI  +G+ 
Sbjct: 534 AMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGED 592

Query: 311 QRTDDVVRALNRLPELGITPD 331
           +R  +    L  + E G+ PD
Sbjct: 593 RRVVEAFSVLQFMRENGLRPD 613



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 1/229 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A   +++ R E    D   ++TLI  +   G  D    ++EEM+     P   TYN +++
Sbjct: 423 AMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMIN 482

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G  +    V+ +  EM + GL PN  TY +L+  YGR+   ++ +     MK  G++ 
Sbjct: 483 LLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP 542

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y+ L+   A  G  D A  + + MK ++  +      +S+I       +V EA ++
Sbjct: 543 SPTMYHALVNAYAQRGLADHALNVVKAMK-ADGLEVSILVLNSLINAFGEDRRVVEAFSV 601

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
              M E G  P++   T+L++   + ++ D V      +   G  PD +
Sbjct: 602 LQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRK 650



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 99/199 (49%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L++  R          ++ +I L G   +++G   +  EMK  G+ PN+I
Sbjct: 451 KGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNII 510

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  GR+ R  +     + M  +GL P+   Y +L+ AY +    +  L+V + M
Sbjct: 511 TYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM 570

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+++S+ + N+L+    +     EAF + + M+ +   +PD  T+++++       +
Sbjct: 571 KADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMREN-GLRPDVITYTTLMKALIRVEQ 629

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +   ++ EM+ +G  P+
Sbjct: 630 FDKVPVIYEEMITSGCAPD 648



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 118/262 (45%), Gaps = 13/262 (4%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 238
           + ++   P+  +Y+ LL +    R   D   + R   +++E  ++    L++ L++  A 
Sbjct: 181 LREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFAR 240

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 297
               D A E+    ++     P S   +++I+     G+V+EAEA+F E   AG  +P  
Sbjct: 241 AALPDAALELLASAQAI-GLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRT 299

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 356
               +L++ Y +     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 300 RAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359

Query: 357 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 413
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419

Query: 414 LENAC----KLLELGLTLEVYT 431
           L +A     K+ E G+  +V T
Sbjct: 420 LGHAMDAFNKMREEGIEPDVVT 441



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            ++LI  +G         +V + M+  G++P++ITY  L+  + R ++  +V  IY+EM 
Sbjct: 582 LNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMI 641

Query: 184 DNGLSPNWNTYASL 197
            +G +P+    A L
Sbjct: 642 TSGCAPDRKARAML 655


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 133/261 (50%), Gaps = 3/261 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A+ LY++  +     +   +++LI+ +   G  +    +Y EM  +G  P+++
Sbjct: 491 RHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLL 550

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + +++E+ + G  P+  +Y  L+    +A +  +   ++  M
Sbjct: 551 LLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTM 610

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G  L    YNT++      G  ++A+++ E+MK+  + +P   T+ S+I   +   +
Sbjct: 611 KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH-EPTVVTYGSVIDGLAKIDR 669

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F E    G E N+ + +SLI  +GK  R D+    +  L + G+TP+     C
Sbjct: 670 LDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 729

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           LL+ + +   EE+ + + C +
Sbjct: 730 LLDALVKA--EEISEALVCFQ 748



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 133/297 (44%), Gaps = 3/297 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G V+ A  L D  ++     D   ++  I  +G AG  D     + EMKA G+  + 
Sbjct: 246 AREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDD 305

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++  + +A R  +   +++ M  N   P    Y +++  YG A   ED  S+   
Sbjct: 306 VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + KG   SV  YN +L+     G  DEA + FE+MK  ++  P+  T++ MI +    G
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK--KDAIPNLSTYNIMIDMLCKAG 423

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 335
           K+  A  + + M +AG  PN+  +  ++    KAQR DD       L      PD   +C
Sbjct: 424 KLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYC 483

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
             +  +      +E  KL E +  +N     VV   L     +   K++  +++N +
Sbjct: 484 SLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEM 540



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 115/236 (48%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG    A+ L+   + +   +D  A++T+I  +  +G  +    + EEMK  G +P +
Sbjct: 595 VKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTV 654

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   +  E
Sbjct: 655 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEE 714

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCR 275
           + +KG+  +V  +N LL          EA   F+ MK  + C P+  T+S +I  +C  R
Sbjct: 715 LMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLK-CTPNYITYSILIHGLCKIR 773

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + EM + GF+PN+F  T++I    KA    +      +  E G   D
Sbjct: 774 -KFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVAD 828



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 94/183 (51%), Gaps = 1/183 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A+++   ++   +S+LI  +G  G  D    + EE+   G+ PN+ T+N LLD
Sbjct: 673 AYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 732

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M D   +PN+ TY+ L+    + R        ++EM+++G + 
Sbjct: 733 ALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKP 792

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  Y T+++  A  G   EA  +FE  K       DS  ++++I   S   + S+A  +
Sbjct: 793 NVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGV-ADSAIYNAIIEGLSNANRASDAYRL 851

Query: 285 FNE 287
           F E
Sbjct: 852 FEE 854



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 112/250 (44%), Gaps = 2/250 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF      R  K+R   +A++ LI    T+ + D  L ++++M+ +G   N+  +  L+ 
Sbjct: 184 AFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR 243

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R  R     ++  EM  N L P+   Y   +  +G+A   +     + EMK  G+ L
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVL 303

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               Y +++ +       +EA E+FE M  ++   P ++ +++MI      GK  +A ++
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV-PCAYAYNTMIMGYGMAGKFEDAYSL 362

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
                  G  P++     ++ C G+  + D+ ++    + +  I P+      +++++ +
Sbjct: 363 LERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCK 421

Query: 345 TPKEELGKLV 354
             K E   +V
Sbjct: 422 AGKLETALVV 431



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A+++L+ +      F+    + EEM   G  P+  T   ++ +  ++++  +  T  + M
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                 P ++ Y +L+ A   +R  +  L+++++M+E G  ++V L+ TL+ + A  G  
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A  + ++MKS+ + +PD   ++  I      GKV  A   F+EM   G   +    TS
Sbjct: 252 DAALSLLDEMKSN-SLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTS 310

Query: 303 LIQCYGKAQRTDDVVRALNRLPE 325
           +I    KA R ++ V     + +
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQ 333



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN ++   L+     A      L  ++ MK +   PN ITY+ L+  + + ++  +  
Sbjct: 720 LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             ++EM   G  PN  TY +++    +A    +  +++ + KEKG      +YN ++   
Sbjct: 780 VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGL 839

Query: 237 ADVGYTDEAFEIFEDMK 253
           ++     +A+ +FE+ +
Sbjct: 840 SNANRASDAYRLFEEAR 856



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 121 PNAFSTLIKLYGTAG--NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +  I ++G      F+     ++EM+  G KPN+ TY  ++  + +A    +  T+
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTL 816

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +++  + G   +   Y +++     A    D   ++ E + KG
Sbjct: 817 FEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKG 859


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 116/214 (54%), Gaps = 2/214 (0%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           I P   S ++K+ G A   +  L+++ ++K    KP   TYN+++  + +     +V  +
Sbjct: 157 IGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHEL 216

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           Y EM + G   P+  TY++L+ A+G+    +  +S++ EMKE G+  +  +Y T+L +  
Sbjct: 217 YNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYF 276

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            +G  ++A  + ++MK  + C    +T++ +I      GKV EA ++F  ML+ G +P++
Sbjct: 277 KLGRVEKALGLVQEMK-EKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDV 335

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ +LI   GKA R  D ++    +  L  TP+
Sbjct: 336 VLINNLINLLGKAGRLADAIKLFEEMESLQCTPN 369



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 124/250 (49%), Gaps = 4/250 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG VE A+ ++     E  + D    + LI L G AG     + ++EEM+++   PN++
Sbjct: 312 KAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVV 371

Query: 158 TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +  +K R  +    Y++M +NG+ P+  TY+ L+  + +    E  L +  E
Sbjct: 372 TYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEE 431

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCR 275
           M EKG       Y +L+         + A E+F++++  ENC   S   ++ MI      
Sbjct: 432 MDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELR--ENCGYSSARVYAVMIKHLGKC 489

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G++SEA  +FNEM + G  P+++   +L+    +   TD+    L  + E G TPD    
Sbjct: 490 GRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSH 549

Query: 336 GCLLNVMTQT 345
             +LN   +T
Sbjct: 550 NIILNGFART 559



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 144/309 (46%), Gaps = 14/309 (4%)

Query: 100 GNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G+ E    LY+   NE   + D   +S LI  +G  G  D  +++++EMK  G+ P    
Sbjct: 208 GHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKI 267

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  +L    +  R  +   + +EM + G +    TY  L++  G+A   E+  S++  M 
Sbjct: 268 YTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNML 327

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGK 277
           ++G +  V L N L+ +    G   +A ++FE+M+S + C P+  T++++I  +   + +
Sbjct: 328 KEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ-CTPNVVTYNTVIKALFESKAR 386

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            SEA   + +M E G  P+ F  + LI  + K  R +  +  L  + E G  P       
Sbjct: 387 ASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCS 446

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGY----VVKLLLEEQDIEGDFKKEATELFNSIS 393
           L+N + +  + E     E  ++     GY    V  ++++     G    EA +LFN   
Sbjct: 447 LINALGKAKRYEAAN--ELFQELRENCGYSSARVYAVMIKHLGKCGRL-SEAVDLFN--- 500

Query: 394 KDVKKAYCN 402
            ++KK  CN
Sbjct: 501 -EMKKLGCN 508



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 2/216 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L+D  +          ++T++ +Y   G  +  L + +EMK  G    + 
Sbjct: 242 KLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVY 301

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +G+A +  +  +I+  M   G  P+     +L+   G+A    D + ++ EM
Sbjct: 302 TYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEM 361

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +      +V  YNT++ A+        EAF  +E MK +    P S+T+S +I       
Sbjct: 362 ESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN-GVVPSSFTYSILIDGFCKTN 420

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           +V +A  +  EM E GF P      SLI   GKA+R
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKR 456



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   E A  L+   R          ++ +IK  G  G     ++++ EMK +G  P++ 
Sbjct: 453 KAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVY 512

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+  M R     +  ++ + M +NG +P+ N++  +L  + R    +  + ++  M
Sbjct: 513 AYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRM 572

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K   ++  V  YNT+L   +  G  +EA ++ ++M +S+  + D  T+SS   I    GK
Sbjct: 573 KNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEM-NSKGFEYDLITYSS---ILEAVGK 628

Query: 278 VSE 280
           + E
Sbjct: 629 IDE 631



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF  Y++ +          +S LI  +      +  L + EEM   G  P    Y +L++
Sbjct: 390 AFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLIN 449

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G+AKR      +++E+ +N    +   YA +++  G+     + + ++ EMK+ G   
Sbjct: 450 ALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNP 509

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            V  YN L++    VG TDEA  +   M+ +  C PD  + + ++   +  G    A  M
Sbjct: 510 DVYAYNALMSGMVRVGMTDEAHSLLRTMEEN-GCTPDLNSHNIILNGFARTGGPKGAIEM 568

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           F  M  +  +P++    +++ C  +A   ++  + +  +   G   D
Sbjct: 569 FTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYD 615



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 1/212 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   VE A  L +    + +   P A+ +LI   G A  ++    +++E++      +  
Sbjct: 418 KTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSAR 477

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++  +G+  R  +   ++ EM   G +P+   Y +L+    R    ++  S+ R M
Sbjct: 478 VYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTM 537

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G    +  +N +L   A  G    A E+F  MK+S+  +PD  ++++++   S  G 
Sbjct: 538 EENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSK-IKPDVVSYNTVLGCLSRAGM 596

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
             EA  +  EM   GFE +L   +S+++  GK
Sbjct: 597 FEEAAKLMKEMNSKGFEYDLITYSSILEAVGK 628



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 12/183 (6%)

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           LD  G     W  KTI +EM  +         + +++  G+A+     LS++ ++K +  
Sbjct: 134 LDEAGMLGEMW--KTI-QEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKC 190

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           + +   YN+++ M    G+ ++  E++ +M +  +C PD+ T+S++I      G+   A 
Sbjct: 191 KPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAI 250

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           ++F+EM E G  P   + T+++  Y K  R +           LG+  + +  GC L V 
Sbjct: 251 SLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKA---------LGLVQEMKEKGCALTVY 301

Query: 343 TQT 345
           T T
Sbjct: 302 TYT 304


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI        +     V++EMKA G +P+ +T+N+LLD  G+A+R  +   + 
Sbjct: 224 DRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVI 283

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM   G  P+  TY SL+ +Y +    E  +++ +EM+ KGM+  V  Y TL++     
Sbjct: 284 QEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRA 343

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A   +++M  +  C+P+  T++++I +   RGK  E  A+F+E   AGF P++  
Sbjct: 344 GKIDAAIVEYDEMVRN-GCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVT 402

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +L+  +G+     +V      + + G  P+
Sbjct: 403 WNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 434



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 115/207 (55%), Gaps = 1/207 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG ++ A   YD       + +   ++ LIK++G  G F   + V++E ++ G  P+++
Sbjct: 342 RAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIV 401

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM   G  P  +TY SL+ +Y R    +  + +Y+ M
Sbjct: 402 TWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRM 461

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   V+ YN +L+  A  G  ++A ++F +M+   +C+PD +++SS++   +   +
Sbjct: 462 MEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME-ERDCKPDEYSYSSLLHAYANAKR 520

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           + + +A+ +++     EP+ +++ +L+
Sbjct: 521 LDKMKALSDDIYSERIEPHNWLVKTLV 547



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 132/307 (42%), Gaps = 44/307 (14%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG +  A  L D A       D  A++ L+  +  AG F   + V+  M   GV+P +
Sbjct: 134 ARAGRLAEASALLDAAPGP----DAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAI 189

Query: 157 ITYNNLLDTMGRAKRPW------------------------------------QVKTIYK 180
           +TYN +L    +   PW                                    +   ++ 
Sbjct: 190 VTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFD 249

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM  +G  P+  T+ SLL  YG+AR  ++ + V +EM+  G   SV  YN+L++     G
Sbjct: 250 EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDG 309

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             ++A  + ++M+  +  +PD  T++++I+     GK+  A   ++EM+  G +PNL   
Sbjct: 310 LLEQAVALKQEME-VKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 368

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
            +LI+ +G   +  +++   +     G  PD      LL V  Q     L   V  V K 
Sbjct: 369 NALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQN---GLDSEVSGVFKE 425

Query: 361 NSKLGYV 367
             K GY+
Sbjct: 426 MKKAGYI 432



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 127/260 (48%), Gaps = 2/260 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++D  +   +  D   F++L+ +YG A   D  + V +EM+ +G  P+++TYN+L+ 
Sbjct: 244 AAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLIS 303

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +  +     Q   + +EM   G+ P+  TY +L+    RA   +  +  Y EM   G + 
Sbjct: 304 SYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKP 363

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           ++  YN L+ M    G   E   +F++ +S+    PD  T+++++ +    G  SE   +
Sbjct: 364 NLCTYNALIKMHGVRGKFPEMMAVFDEFRSA-GFVPDIVTWNTLLAVFGQNGLDSEVSGV 422

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           F EM +AG+ P      SLI  Y +    D  ++   R+ E GI PD      +L+ + +
Sbjct: 423 FKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALAR 482

Query: 345 TPK-EELGKLVECVEKSNSK 363
             + E+  KL   +E+ + K
Sbjct: 483 GGRWEQAEKLFAEMEERDCK 502



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  L      +  + D   ++TLI     AG  D  +  Y+EM   G KPN+ TY
Sbjct: 309 GLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 368

Query: 160 NNLLDTMG-RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           N L+   G R K P ++  ++ E    G  P+  T+ +LL  +G+     +   V++EMK
Sbjct: 369 NALIKMHGVRGKFP-EMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMK 427

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G       Y +L++  +  G  D A +I++ M  +    PD  T++++++  +  G+ 
Sbjct: 428 KAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEA-GIYPDVSTYNAVLSALARGGRW 486

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
            +AE +F EM E   +P+ +  +SL+  Y  A+R D
Sbjct: 487 EQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLD 522



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 117/272 (43%), Gaps = 36/272 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  ++A  +Y R        D + ++ ++      G ++    ++ EM+    KP+ 
Sbjct: 446 SRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDE 505

Query: 157 ITYNNLLDTMGRAKR-------------------PWQVKTI----------------YKE 181
            +Y++LL     AKR                    W VKT+                + E
Sbjct: 506 YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 565

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +     S + N   +++  YG+ R       +   MKE  + LS   YN+L+ M + +G 
Sbjct: 566 LRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGD 625

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++   I  ++KSS   +PD ++++++I     +G++ EA  +F+EM  +G +P++    
Sbjct: 626 CEKCENILTEIKSS-GVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYN 684

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             ++ Y      ++ +  +  +   G  P++R
Sbjct: 685 IFVKSYVSNSMFEEAIELVRYMVTQGCKPNER 716



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++L+ +Y   G+ + C N+  E+K+ GV+P+  +YN ++   GR  +  +   ++ EM 
Sbjct: 613 YNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK 672

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
            +GL P+  TY   +++Y      E+ + + R M  +G + +   YN+++   C +   T
Sbjct: 673 CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLT 732

Query: 243 D 243
           D
Sbjct: 733 D 733


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI        +     V++EMKA G +P+ +T+N+LLD  G+A+R  +   + 
Sbjct: 242 DRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVI 301

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM   G  P+  TY SL+ +Y +    E  +++ +EM+ KGM+  V  Y TL++     
Sbjct: 302 QEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRA 361

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A   +++M  +  C+P+  T++++I +   RGK  E  A+F+E   AGF P++  
Sbjct: 362 GKIDAAIVEYDEMVRN-GCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVT 420

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +L+  +G+     +V      + + G  P+
Sbjct: 421 WNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 452



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 115/207 (55%), Gaps = 1/207 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG ++ A   YD       + +   ++ LIK++G  G F   + V++E ++ G  P+++
Sbjct: 360 RAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIV 419

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM   G  P  +TY SL+ +Y R    +  + +Y+ M
Sbjct: 420 TWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRM 479

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   V+ YN +L+  A  G  ++A ++F +M+   +C+PD +++SS++   +   +
Sbjct: 480 MEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME-ERDCKPDEYSYSSLLHAYANAKR 538

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           + + +A+ +++     EP+ +++ +L+
Sbjct: 539 LDKMKALSDDIYSERIEPHNWLVKTLV 565



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 132/307 (42%), Gaps = 44/307 (14%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG +  A  L D A       D  A++ L+  +  AG F   + V+  M   GV+P +
Sbjct: 152 ARAGRLAEASALLDAAPGP----DAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAI 207

Query: 157 ITYNNLLDTMGRAKRPW------------------------------------QVKTIYK 180
           +TYN +L    +   PW                                    +   ++ 
Sbjct: 208 VTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFD 267

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM  +G  P+  T+ SLL  YG+AR  ++ + V +EM+  G   SV  YN+L++     G
Sbjct: 268 EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDG 327

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             ++A  + ++M+  +  +PD  T++++I+     GK+  A   ++EM+  G +PNL   
Sbjct: 328 LLEQAVALKQEME-VKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 386

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
            +LI+ +G   +  +++   +     G  PD      LL V  Q     L   V  V K 
Sbjct: 387 NALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQN---GLDSEVSGVFKE 443

Query: 361 NSKLGYV 367
             K GY+
Sbjct: 444 MKKAGYI 450



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 127/260 (48%), Gaps = 2/260 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++D  +   +  D   F++L+ +YG A   D  + V +EM+ +G  P+++TYN+L+ 
Sbjct: 262 AAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLIS 321

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +  +     Q   + +EM   G+ P+  TY +L+    RA   +  +  Y EM   G + 
Sbjct: 322 SYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKP 381

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           ++  YN L+ M    G   E   +F++ +S+    PD  T+++++ +    G  SE   +
Sbjct: 382 NLCTYNALIKMHGVRGKFPEMMAVFDEFRSA-GFVPDIVTWNTLLAVFGQNGLDSEVSGV 440

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           F EM +AG+ P      SLI  Y +    D  ++   R+ E GI PD      +L+ + +
Sbjct: 441 FKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALAR 500

Query: 345 TPK-EELGKLVECVEKSNSK 363
             + E+  KL   +E+ + K
Sbjct: 501 GGRWEQAEKLFAEMEERDCK 520



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G +E A  L      +  + D   ++TLI     AG  D  +  Y+EM   G KPN+
Sbjct: 324 VKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNL 383

Query: 157 ITYNNLLDTMG-RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            TYN L+   G R K P ++  ++ E    G  P+  T+ +LL  +G+     +   V++
Sbjct: 384 CTYNALIKMHGVRGKFP-EMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFK 442

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK+ G       Y +L++  +  G  D A +I++ M  +    PD  T++++++  +  
Sbjct: 443 EMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEA-GIYPDVSTYNAVLSALARG 501

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           G+  +AE +F EM E   +P+ +  +SL+  Y  A+R D
Sbjct: 502 GRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLD 540



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 117/272 (43%), Gaps = 36/272 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  ++A  +Y R        D + ++ ++      G ++    ++ EM+    KP+ 
Sbjct: 464 SRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDE 523

Query: 157 ITYNNLLDTMGRAKR-------------------PWQVKTI----------------YKE 181
            +Y++LL     AKR                    W VKT+                + E
Sbjct: 524 YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 583

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +     S + N   +++  YG+ R       +   MKE  + LS   YN+L+ M + +G 
Sbjct: 584 LRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGD 643

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++   I  ++KSS   +PD ++++++I     +G++ EA  +F+EM  +G +P++    
Sbjct: 644 CEKCENILTEIKSS-GVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYN 702

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             ++ Y      ++ +  +  +   G  P++R
Sbjct: 703 IFVKSYVSNSMFEEAIELVRYMVTQGCKPNER 734



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++L+ +Y   G+ + C N+  E+K+ GV+P+  +YN ++   GR  +  +   ++ EM 
Sbjct: 631 YNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK 690

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
            +GL P+  TY   +++Y      E+ + + R M  +G + +   YN+++   C +   T
Sbjct: 691 CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLT 750

Query: 243 D 243
           D
Sbjct: 751 D 751


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 120/246 (48%), Gaps = 1/246 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L    R    R D   ++TLI     + N +  + V+E+M A   +P++ TYN ++
Sbjct: 276 VALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMV 335

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR  +  + + +++E+ + G  P+  TY SLL A+ +    +       ++ + G +
Sbjct: 336 SVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFK 395

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
            +   YNT++ M   +G  D A  ++++M++   C PD+ T++ MI       +++EA  
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAM-GCTPDAVTYTVMIDSLGKMNRIAEAGK 454

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           +  +M +AG +P L   ++LI  Y K  R  D     + +   G+ PD      +L+V  
Sbjct: 455 VLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFA 514

Query: 344 QTPKEE 349
           ++   E
Sbjct: 515 RSGDTE 520



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 156/368 (42%), Gaps = 15/368 (4%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++ D    + L+ +Y  AGNFD    VY  +   G++P+  TYN L+    R+ RP +  
Sbjct: 916  FKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGF 975

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            T+  EM   GL+P   +Y SLL A  +A   E    ++ EM+ K  QL+ ++Y+ ++ + 
Sbjct: 976  TLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIY 1035

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             + G   +A  +   MK  +  +P   T   ++T     G+  EAE + N +  +  E +
Sbjct: 1036 RNAGNHSKAENLLAVMK-EDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVS 1094

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
                +++   Y K    +     L  +   G+ PD +   C +   +   +     L   
Sbjct: 1095 TLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAIL--- 1151

Query: 357  VEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL--FNSISKDVKKAYCNCLIDLCVNLNLL 414
            + KS    G+ + + L  +       + A  L    ++       + N + DL       
Sbjct: 1152 LLKSLQDCGFDLPIRLLTERTPSLLSEIANYLEELEALEDSAALNFVNAVEDLLWAFECR 1211

Query: 415  ENACKLLELGLTLEVYTDIQSR-SPTQWSLHLKSLSLGAALTALHIWIND--------LS 465
              A ++ +L +   +Y D   R +   W    + LS GAAL  L +W++         L 
Sbjct: 1212 ATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVGLTLWLDHMQPLKIARLP 1271

Query: 466  KALESGEE 473
            K  E GEE
Sbjct: 1272 KCGELGEE 1279



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 117/235 (49%), Gaps = 6/235 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++T+I +YG  G  D  + +Y+EM+A+G  P+ +TY  ++D++G+  R  +   + ++MT
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMT 460

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D GL P    +++L+ AY +     D  + +  M   G++     Y  +L + A  G T+
Sbjct: 461 DAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTE 520

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +   ++  M  ++N +PD   +  ++   +   K  E E +  +M E     NL +++++
Sbjct: 521 KMLCLYRKMM-NDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDM-ELLCRMNLGIISTM 578

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECV 357
           +    KA+      + L +    G  PD +    ++N    T K E G  L+EC+
Sbjct: 579 LI---KARCVSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECI 630



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 132/281 (46%), Gaps = 3/281 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +++ N+E A  +++     + R D   ++ ++ ++G  G  +    ++ E+   G  P+ 
Sbjct: 304 SQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDA 363

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITYN+LL    +     +V+   +++   G   N  TY +++  YG+    +  + +Y E
Sbjct: 364 ITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDE 423

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+  G       Y  ++     +    EA ++ EDM  +   +P    FS++I   +  G
Sbjct: 424 MRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDA-GLKPTLIAFSALICAYAKGG 482

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           + ++AE  F+ M+ +G +P+      ++  + ++  T+ ++    ++      PDD    
Sbjct: 483 RRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQ 542

Query: 337 CLLNVMTQTPK-EELGKLVECVE-KSNSKLGYVVKLLLEEQ 375
            LL  + +  K EE+ ++++ +E      LG +  +L++ +
Sbjct: 543 VLLVALAKEDKCEEIEEVIQDMELLCRMNLGIISTMLIKAR 583



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 42/252 (16%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R  P+  + +++  G + ++   L+ +E + A    P       +L  +GRA++    + 
Sbjct: 152 RASPDEVAFVVRAVGES-SWRRALDAFEWL-ARSSAPASRAVAVVLGVLGRARQDSIAEE 209

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGR------ARYGEDT--------------------- 210
           ++      G +     + +++  Y R      AR   DT                     
Sbjct: 210 VFLRFAGEGATVQ--VFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARS 267

Query: 211 ----------LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
                     L +  E+++ G++  V  YNTL++ C+     ++A  +FEDM +SE C+P
Sbjct: 268 KSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASE-CRP 326

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D WT+++M+++    GK  EAE +F E++E GF P+     SL+  + K    D V    
Sbjct: 327 DLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTC 386

Query: 321 NRLPELGITPDD 332
            +L + G   ++
Sbjct: 387 EQLVKAGFKKNE 398



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 112/256 (43%), Gaps = 13/256 (5%)

Query: 159  YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            +N L+     +    + + ++  M   G  P  ++   ++RA       ++   V  E++
Sbjct: 783  WNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQ 842

Query: 219  EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            +   ++S +    LL   A  G   E  +I+  MK++    P+   + SMI++     + 
Sbjct: 843  DMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAA-GYLPNMHLYRSMISLLCHHNRF 901

Query: 279  SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
             + E M  EM  AGF+P+L +L +L+  Y  A   D   +    + E G+ PD+     L
Sbjct: 902  RDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTL 961

Query: 339  LNVMTQT--PKE------ELGK--LVECVEKSNSKLGYVVKLLLEEQ--DIEGDFKKEAT 386
            + +  ++  P+E      E+GK  L   ++   S L    K  L EQ   I  + + ++ 
Sbjct: 962  IVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSY 1021

Query: 387  ELFNSISKDVKKAYCN 402
            +L  SI   + K Y N
Sbjct: 1022 QLNRSIYHMMMKIYRN 1037


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 2/233 (0%)

Query: 100 GN-VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           GN +++A  +Y +   E    +   ++TLI +YG  G ++  + V + ++  G+ P + T
Sbjct: 243 GNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRT 302

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN ++     + +  +   IY+ M   G  P   TY +L+ AYG+    +  L ++++M 
Sbjct: 303 YNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMV 362

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            +G + +V  Y++L++ C   G  + A E+F +M  +E C+P+  T++S+I  C+   + 
Sbjct: 363 RRGCERNVITYSSLISACEKAGRWELALELFREMH-TEGCRPNVVTYNSLIAACAQGAQW 421

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +A+ MF +M   G +P+      LI  Y +A      + A  ++      PD
Sbjct: 422 EKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPD 474



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 123/251 (49%), Gaps = 10/251 (3%)

Query: 87  ASKLKEKSYDTRAGNVEMAFGLYD--RARNEKWRIDP----NAFSTLIKLYGTAGNFDGC 140
           A+ LKE +   ++G+V  A  L+D  R  ++   + P      ++T+I   GT       
Sbjct: 158 AALLKELN---KSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRA 214

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L +  EM++ G++ N+ TY+ L++   +         +Y++M   G +PN  TY +L+  
Sbjct: 215 LELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDV 274

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           YG+    E+ + V   ++ +G+   +  YNT++  C   G   EA  I+E M ++   QP
Sbjct: 275 YGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAA-GAQP 333

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
            + T++++I+     G++  A  +F +M+  G E N+   +SLI    KA R +  +   
Sbjct: 334 TATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELF 393

Query: 321 NRLPELGITPD 331
             +   G  P+
Sbjct: 394 REMHTEGCRPN 404



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y T+++ C        A E+  +M+S    Q +  T+S+++ +C    ++  A  ++ +M
Sbjct: 198 YTTMISQCGTQQQLRRALELVAEMRS-RGIQCNVHTYSALMNVCIKGNELDLALDVYRQM 256

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           L  G  PNL    +LI  YGK    ++ +R L+ L   GI P+ R
Sbjct: 257 LAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIR 301



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  ++++ ++   + D   F  LI  Y  AG++   L  +E+MKA   +P+ + YN +
Sbjct: 422 EKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTI 481

Query: 163 LDTMGRAKRPWQVKTIYKEM 182
           +  +      W+   ++ ++
Sbjct: 482 VGAL------WKTGLVWAQI 495


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1114

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 1/236 (0%)

Query: 97   TRAGNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
             +AGNV+ A  LY D   +  +      +  LI     +G       ++E M   G +PN
Sbjct: 868  VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPN 927

Query: 156  MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
               YN L++  G+A        ++K M   G+ P+  TY+ L+         ++ L  +R
Sbjct: 928  CAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFR 987

Query: 216  EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            E+KE G+   V  YN ++         +EA  +F +MK S    PD +T++S+I      
Sbjct: 988  ELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIA 1047

Query: 276  GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G V EA  ++NE+  AG EPN+F   +LI+ Y  + + +        +   G +P+
Sbjct: 1048 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1103



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R   ++ A  ++D    E   + P A++    I  YG +G+    L  +E+MK  G+ PN
Sbjct: 412 RVHRLDDALEIFDNM--ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPN 469

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++  N  L ++ +A R  + K I+  + D GL P+  TY  +++ Y +    ++ + +  
Sbjct: 470 IVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLS 529

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM E   +  V + N+L+         DEA+++F  MK  +  +P   T+++++      
Sbjct: 530 EMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK-LKPTVVTYNTLLAGLGKN 588

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           GK+ EA  +F  M++ G  PN     +L  C  K       ++ L ++ ++G  PD
Sbjct: 589 GKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 644



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 106/217 (48%), Gaps = 1/217 (0%)

Query: 136 NFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           N  G   ++E+  K +GV+P + TYN L+  +  A      + ++ ++ + G  P+  TY
Sbjct: 766 NASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATY 825

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
             LL AYG++   ++   +Y+EM     + +   +N +++     G  D+A +++ D+ S
Sbjct: 826 NFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMS 885

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             +  P + T+  +I   S  G++ EA+ +F  M + G  PN  +   LI  +GKA   D
Sbjct: 886 DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEAD 945

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
                  R+ + G+ PD +    L++ +    + + G
Sbjct: 946 AACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG 982



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 105/234 (44%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG +  A+ +  R  +E    D   ++ LI    TA   D    V+ +MK    KP+ +
Sbjct: 272 RAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRV 331

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD     +    V   + EM  +G  P+  T+  L+ A  +A    +  +    M
Sbjct: 332 TYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVM 391

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +++G+  ++  YNTL+     V   D+A EIF++M+S    +P ++T+   I      G 
Sbjct: 392 RDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESL-GVKPTAYTYIVFIDYYGKSGD 450

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              A   F +M   G  PN+    + +    KA R  +  +    L ++G+ PD
Sbjct: 451 SVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 504



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 110/230 (47%), Gaps = 4/230 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EMA+ ++D  +    + D N + T+ K     G          +M+  G   N  +YN L
Sbjct: 138 EMAY-VFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGL 196

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  + +++   +   +Y+ M  +G  P+  TY+SL+   G+ R  E  + + +EM+  G+
Sbjct: 197 IHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGL 256

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEA 281
           + +V  +   + +    G  +EA+EI + M   E C PD  T++ +I  +C+ R K+  A
Sbjct: 257 KPNVYTFTICIRVLGRAGKINEAYEILKRM-DDEGCGPDVVTYTVLIDALCTAR-KLDCA 314

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +F +M     +P+     +L+  +   +  D V +  + + + G  PD
Sbjct: 315 KEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPD 364



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 107/254 (42%), Gaps = 1/254 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           ++E   GL         + +   F+  I++ G AG  +    + + M   G  P+++TY 
Sbjct: 240 DIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYT 299

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+D +  A++    K ++ +M      P+  TY +LL  +   R  +     + EM++ 
Sbjct: 300 VLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKD 359

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G    V  +  L+      G   EAF   + M+  +   P+  T++++I       ++ +
Sbjct: 360 GHVPDVVTFTILVDALCKAGNFGEAFAKLDVMR-DQGILPNLHTYNTLICGLLRVHRLDD 418

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A  +F+ M   G +P  +     I  YGK+  +   +    ++   GI P+   C   L 
Sbjct: 419 ALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLY 478

Query: 341 VMTQTPKEELGKLV 354
            + +  ++   K +
Sbjct: 479 SLAKAGRDREAKQI 492



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 83/192 (43%), Gaps = 5/192 (2%)

Query: 144 YEEMKAIGVKPNMI----TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           +   K++    N++    T N +L+ +    +  ++  ++  M    +  + NTY ++ +
Sbjct: 104 FSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFK 163

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
                          R+M+E G  L+   YN L+ +     +  EA E++  M   +  +
Sbjct: 164 CLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRM-ILDGFR 222

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           P   T+SS++     R  +     +  EM   G +PN++  T  I+  G+A + ++    
Sbjct: 223 PSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEI 282

Query: 320 LNRLPELGITPD 331
           L R+ + G  PD
Sbjct: 283 LKRMDDEGCGPD 294



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 65/171 (38%), Gaps = 36/171 (21%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK--------- 148
            +AG  + A  L+ R   E  R D   +S L+      G  D  L+ + E+K         
Sbjct: 940  KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVV 999

Query: 149  ---------------------------AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                                       + G+ P++ TYN+L+  +G A    +   IY E
Sbjct: 1000 CYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNE 1059

Query: 182  MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   GL PN  T+ +L+R Y  +   E   +VY+ M   G   +   Y  L
Sbjct: 1060 IQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 11/240 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G ++ A  L           D    ++LI     A   D    ++  MK + +KP +
Sbjct: 516 SKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTV 575

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL  +G+  +  +   +++ M   G  PN  T+ +L     +       L +  +
Sbjct: 576 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFK 635

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G    V  YNT++      G   EA   F  MK  +   PD  T  +++      G
Sbjct: 636 MMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK--KLVYPDFVTLCTLLPGVVKAG 693

Query: 277 KVSEA-EAMFNEMLEAGFEP-NLF---VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + +A + + N +     +P NLF   ++ S++   G     D+ V    RL   GI  D
Sbjct: 694 LIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAG----IDNAVSFSERLVANGICRD 749


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 128/260 (49%), Gaps = 6/260 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A+  +   R E  R D    + +I   G AG  D  + ++EEM+ +   P+++
Sbjct: 308 KAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVV 367

Query: 158 TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +  +K R  ++ + ++ M  +G+SP+  TY+ L+  + +    E  + +  E
Sbjct: 368 TYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEE 427

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCR 275
           M EKG       Y +L+         D A E+F+++K  ENC   S   ++ MI      
Sbjct: 428 MDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELK--ENCGSSSARVYAVMIKHLGKA 485

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G++ +A  +F+EM   G  PN++   +L+    +A   D+ +  + R+ + G  PD    
Sbjct: 486 GRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSY 545

Query: 336 GCLLNVMTQT--PKEELGKL 353
             +LN + +T  P   +G L
Sbjct: 546 NIILNALAKTGGPDRAMGML 565



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 114/229 (49%), Gaps = 2/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EM   + +  RN    + P   S +I++ G A      + ++ ++KA   +P    YN++
Sbjct: 137 EMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSM 196

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  +       +V  +Y EM++ G   P+  TY++L+ A+ +    +  + +  EMK+ G
Sbjct: 197 IIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNG 256

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           MQ +  +Y  L+A+   +     A  +FE+M+  + C+PD +T++ +I      G++ EA
Sbjct: 257 MQPTAKIYTMLMALLFKLDNVHGALGLFEEMR-HQYCRPDVFTYTELIRGLGKAGRLDEA 315

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              F+EM   G  P+  ++ ++I   GKA R DD ++    +  L   P
Sbjct: 316 YNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIP 364



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 133/299 (44%), Gaps = 6/299 (2%)

Query: 100 GNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G  E    LY+   NE +   D   +S LI  +   G  D  + +  EMK  G++P    
Sbjct: 204 GEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKI 263

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+  + +         +++EM      P+  TY  L+R  G+A   ++  + + EM+
Sbjct: 264 YTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMR 323

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGK 277
            +G +    L N ++      G  D+A ++FE+M++   C P   T++++I  +   + +
Sbjct: 324 REGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETL-RCIPSVVTYNTIIKALFESKSR 382

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSE  + F  M  +G  P+ F  + LI  + K  RT+  +  L  + E G  P       
Sbjct: 383 VSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCS 442

Query: 338 LLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
           L++ + +  + +L      E  E   S    V  ++++     G    +A +LF+ +++
Sbjct: 443 LIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRL-DDAVDLFDEMNR 500



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 1/192 (0%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P A+ +LI   G A  +D    +++E+K      +   Y  ++  +G+A R      ++ 
Sbjct: 437 PAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFD 496

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM   G +PN   Y +L+    RA   ++ L+  R M++ G    +  YN +L   A  G
Sbjct: 497 EMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTG 556

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             D A  +  +MK S   +PD+ ++++++   S  G   EA  +  EM   GF+ +L   
Sbjct: 557 GPDRAMGMLCNMKQSA-IKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITY 615

Query: 301 TSLIQCYGKAQR 312
           +S+++  GK  +
Sbjct: 616 SSILEAIGKVDQ 627



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 2/218 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L +  ++   +     ++ L+ L     N  G L ++EEM+    +P++ 
Sbjct: 238 KLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVF 297

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +G+A R  +    + EM   G  P+     +++   G+A   +D + ++ EM
Sbjct: 298 TYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEM 357

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +      SV  YNT++ A+        E    FE MK S    P  +T+S +I       
Sbjct: 358 ETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGS-GISPSPFTYSILIDGFCKTN 416

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           +  +A  +  EM E GF P      SLI   GKA+R D
Sbjct: 417 RTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 454



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 1/223 (0%)

Query: 109 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           ++R +       P  +S LI  +      +  + + EEM   G  P    Y +L+D +G+
Sbjct: 390 FERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 449

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
           AKR      +++E+ +N  S +   YA +++  G+A   +D + ++ EM   G   +V  
Sbjct: 450 AKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYA 509

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           YN L++  A  G  DEA      M+    C PD  +++ ++   +  G    A  M   M
Sbjct: 510 YNALMSGLARAGMLDEALTTMRRMQ-DHGCIPDINSYNIILNALAKTGGPDRAMGMLCNM 568

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++  +P+     +++     A   ++  + +  +  +G   D
Sbjct: 569 KQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYD 611


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 116/234 (49%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  AF ++ +     +  +   F+TLIK     G     LN ++++ A+G + N I
Sbjct: 134 QLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQI 193

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L+D + +         + + +    + PN   Y++++    + ++  D   +Y EM
Sbjct: 194 SYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEM 253

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG+  +V  Y+ L++    VG   +A ++F  M  SEN +PD +TF+ ++ +    GK
Sbjct: 254 VSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKM-ISENIKPDVYTFNILVDVFCKSGK 312

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +S A  + +EM + G  PN+   +S++    K  R D  V  L +L + GI P+
Sbjct: 313 ISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPN 366



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 91/189 (48%), Gaps = 1/189 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G ++ A  L+++  +E  + D   F+ L+ ++  +G     L + +EM   G  PN++T
Sbjct: 275 VGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVT 334

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+++LD + +  R  +   +  ++ D G+ PN +TY  L+     +   ED  +++ ++ 
Sbjct: 335 YSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLL 394

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            KG  ++V  Y  +       G  DEA  +   M+ +  C PD+ T+  +      +G+ 
Sbjct: 395 VKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEEN-GCIPDAKTYELIKLSLFKKGEN 453

Query: 279 SEAEAMFNE 287
             AE +  E
Sbjct: 454 DMAEKLHRE 462



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 110/238 (46%), Gaps = 5/238 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A  L  R   +  + +   +ST+I       + +   ++Y EM + G+ PN++
Sbjct: 204 KVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVV 263

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+       +      ++ +M    + P+  T+  L+  + ++      L +  EM
Sbjct: 264 TYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEM 323

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G   ++  Y+++L         D+A  +   +K  +  +P+  T++ +I      GK
Sbjct: 324 HDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLK-DQGIRPNMHTYTILIDGLCTSGK 382

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT--DDVVRALNRLPELGITPDDR 333
           + +A  +F ++L  G++  + V+T ++  YG  ++   D+    L+++ E G  PD +
Sbjct: 383 LEDARNIFEDLLVKGYD--ITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAK 438



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 101/213 (47%), Gaps = 3/213 (1%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           ++   L + ++M+  G+KPN++  N L++   +        +++ ++   G +PN  T+ 
Sbjct: 102 HYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFT 161

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +L++           L+ + ++   G Q +   Y TL+     VG T  A ++   +   
Sbjct: 162 TLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRV-DG 220

Query: 256 ENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           +  QP+   +S++I    C+ K V++A  +++EM+  G  PN+   ++LI  +    +  
Sbjct: 221 KLVQPNVVMYSTIID-GMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLK 279

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           D V   N++    I PD      L++V  ++ K
Sbjct: 280 DAVDLFNKMISENIKPDVYTFNILVDVFCKSGK 312


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 109/203 (53%), Gaps = 1/203 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
            L +  R+     D   ++TLI        ++  ++++++MK  G  P+ +TYN LLD  
Sbjct: 250 ALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVF 309

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           G+++RP +   + +EM  NG SP   TY SL+ AY +    E+ L +  +M  KG++  V
Sbjct: 310 GKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDV 369

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y TLL+     G  D A ++F +M++   C+P+  TF+++I +   RGK +E   +F+
Sbjct: 370 FTYTTLLSGFEKAGKDDFAIQVFLEMRAV-GCKPNICTFNALIKMHGNRGKFAEMMKVFD 428

Query: 287 EMLEAGFEPNLFVLTSLIQCYGK 309
           ++      P++    +L+  +G+
Sbjct: 429 DIKLCNCSPDIVTWNTLLAVFGQ 451



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R    E A  L+ + + E +  D   ++ L+ ++G +      + V +EM+A G  P  +
Sbjct: 276 RGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSV 335

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+    +     +   +  +M   G+ P+  TY +LL  + +A   +  + V+ EM
Sbjct: 336 TYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEM 395

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G + ++  +N L+ M  + G   E  ++F+D+K   NC PD  T+++++ +    G 
Sbjct: 396 RAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLC-NCSPDIVTWNTLLAVFGQNGM 454

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            S+   +F EM  AGF        +LI  Y +    D  +     + E G+ PD
Sbjct: 455 DSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPD 508



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 120/244 (49%), Gaps = 1/244 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  + A  ++   R    + +   F+ LIK++G  G F   + V++++K     P+++
Sbjct: 381 KAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIV 440

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     QV  I+KEM   G     +T+ +L+ AY R    +  ++VY+ M
Sbjct: 441 TWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSM 500

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   ++ YN +LA  A  G  +++ ++  +M+    C+P+  ++SS++   +   +
Sbjct: 501 LEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGR-CKPNELSYSSLLHAYANGKE 559

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +    A   E+     E +  +L +L+    K+    +  RA   L   GI+PD      
Sbjct: 560 IERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNA 619

Query: 338 LLNV 341
           +L++
Sbjct: 620 MLSI 623



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 16/216 (7%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           + E++  G+ P++ T N +L   GR +   +   I   M +   +P+  TY SL+  Y R
Sbjct: 602 FLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSR 661

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           +   + +  + RE+ EKGM+     YNT++      G   EA  IF +MK S    PD  
Sbjct: 662 SENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSA-LVPDVV 720

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+++ I   +     +EA  +   M++ G +P+     S++  Y K  +  +        
Sbjct: 721 TYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEA------- 773

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
                   + F   L N+     KEE  +L+E + K
Sbjct: 774 --------NSFVKNLSNLDPHVSKEEESRLLERIAK 801



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 95/207 (45%), Gaps = 3/207 (1%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL---LDTMGRAKRPWQVKTIYKEMT 183
           +IK  G +   D  L V+  ++      N+ + + +   +  +G+A R     ++   + 
Sbjct: 126 IIKALGFSNKCDLALAVFHWVRTNNSNTNLFSSSAIPVIIKILGKAGRVSSAASLLLALQ 185

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           ++G+  +   Y  L+ AY  +    D ++++ +M++ G   ++  YN +L +   +G   
Sbjct: 186 NDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPW 245

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                  +   S    PD +T++++I+ C       EA  +F +M   GF P+     +L
Sbjct: 246 SNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNAL 305

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           +  +GK++R  + ++ L  +   G +P
Sbjct: 306 LDVFGKSRRPQEAMKVLQEMEANGFSP 332



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 104/260 (40%), Gaps = 36/260 (13%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-------------- 152
           G++   +   +  + + F+TLI  Y   G+FD  + VY+ M   GV              
Sbjct: 460 GIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAAL 519

Query: 153 ---------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
                                KPN ++Y++LL      K   ++    +E+    +  + 
Sbjct: 520 ARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHA 579

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
               +L+    ++    +T   + E++ +G+   +T  N +L++        +A EI   
Sbjct: 580 VLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNF 639

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M  +    P   T++S++ + S      ++E +  E+LE G +P+     ++I  Y +  
Sbjct: 640 MHETR-FTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNG 698

Query: 312 RTDDVVRALNRLPELGITPD 331
           R  +  R  + + +  + PD
Sbjct: 699 RMKEASRIFSEMKDSALVPD 718



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 55/110 (50%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++L+ +Y  + NF     +  E+   G+KP+ I+YN ++    R  R  +   I+ EM 
Sbjct: 652 YNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMK 711

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           D+ L P+  TY + +  Y       + + V R M ++G +     YN+++
Sbjct: 712 DSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIV 761



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 38/82 (46%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  Y   G       ++ EMK   + P+++TYN  + T        +   + 
Sbjct: 683 DRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVV 742

Query: 180 KEMTDNGLSPNWNTYASLLRAY 201
           + M   G  P+ NTY S++  Y
Sbjct: 743 RYMIKQGCKPDQNTYNSIVDWY 764


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 135/271 (49%), Gaps = 8/271 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+VE A GL++  +      D   ++++I  +G  G  D  +  +EEMK +  +P++I
Sbjct: 274 KEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI 333

Query: 158 TYNNLLDTMGR-AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN L++   +  K P  ++  Y+EM  NGL PN  +Y++L+ A+ +    +  +  Y +
Sbjct: 334 TYNALINCFCKFGKLPIGLE-FYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVD 392

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+  G+  +   Y +L+     +G   +AF +  +M      + +  T++++I       
Sbjct: 393 MRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQV-GVEWNVVTYTALIDGLCDAE 451

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ EAE +F +M  AG  PNL    +LI  + KA+  D  +  LN L   GI PD    G
Sbjct: 452 RMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG 511

Query: 337 CLLNVMTQTPKEELGKLV-----ECVEKSNS 362
             +  +    K E  K+V     EC  K+NS
Sbjct: 512 TFIWGLCSLEKIEAAKVVMNEMKECGIKANS 542



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 112 ARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           ++ +++R+ P   S   L+  +   G  D     +++M   G +P + TYN ++D M + 
Sbjct: 216 SKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKE 275

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
                 + +++EM   GL P+  TY S++  +G+    +DT+  + EMK+   +  V  Y
Sbjct: 276 GDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITY 335

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N L+      G      E + +MK +   +P+  ++S+++      G + +A   + +M 
Sbjct: 336 NALINCFCKFGKLPIGLEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 394

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             G  PN +  TSLI    K     D  R  N + ++G+
Sbjct: 395 RVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 433



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 7/210 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           FS LI L    G  +  +  + +MK   V P   + N LL    +  +   VK  +K+M 
Sbjct: 199 FSVLIDL----GMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G  P   TY  ++    +    E    ++ EMK +G+      YN+++     VG  D
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 314

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           +    FE+MK    C+PD  T++++I  C C+ GK+      + EM   G +PN+   ++
Sbjct: 315 DTVCFFEEMKDM-CCEPDVITYNALIN-CFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           L+  + K       ++    +  +G+ P++
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNE 402



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 7/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R    E  FG  D A      + PN  +++ LI  +  A N D  L +  E+K  G+KP+
Sbjct: 452 RMKEAEELFGKMDTAG-----VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ Y   +  +   ++    K +  EM + G+  N   Y +L+ AY ++    + L +  
Sbjct: 507 LLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLD 566

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMKE  ++++V  +  L+          +A + F  + +    Q ++  F++MI      
Sbjct: 567 EMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 626

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +V  A  +F +M++ G  P+    TSL+    K     + +   +++ E+G+  D
Sbjct: 627 NQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLD 682



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 79/220 (35%), Gaps = 51/220 (23%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--------------- 226
           MT NG   +  +Y  +      AR   D  SV +EM        V               
Sbjct: 133 MTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGF 192

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMK------SSENC---------------------- 258
            +++ L ++  D+G  +EA + F  MK       + +C                      
Sbjct: 193 GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKD 252

Query: 259 ------QPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
                 +P  +T++ MI  C C+ G V  A  +F EM   G  P+     S+I  +GK  
Sbjct: 253 MIGAGARPTVFTYNIMID-CMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 311

Query: 312 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
           R DD V     + ++   PD      L+N   +  K  +G
Sbjct: 312 RLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 351



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 1/112 (0%)

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
            G++ N   +  ++D + +  +     T++++M   GL P+   Y SL+    +     +
Sbjct: 607 FGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLE 666

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            L++  +M E GM+L +  Y +L+   +      +A    E+M   E   PD
Sbjct: 667 ALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM-IGEGIHPD 717


>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
           C-169]
          Length = 1226

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 129/254 (50%), Gaps = 13/254 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G +++A  +++  + +   I PN   ++TLI +YG  G ++  L V   MK  G++P 
Sbjct: 183 KCGQLKLALDVWEDMQRDG--IVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPV 240

Query: 156 MITYNNLL---DTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
             TYN L+   +T G+    WQ    +Y+EM   G + N  +Y +L+ A+ +A      L
Sbjct: 241 TRTYNTLMIACNTSGQ----WQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVL 296

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
             YR+M ++G + SV  Y++L++ C   G    A   F++    +NC+P+  TF+S+IT 
Sbjct: 297 DTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECL-KDNCRPNVITFNSLITA 355

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           C+   +  +A  +F  M + G  P++   T+LI  Y +  +    ++A   +   G  PD
Sbjct: 356 CAQGAQWEKARELFELMQQQGCTPDVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPD 415

Query: 332 DRFCGCLLNVMTQT 345
                 +++ +  T
Sbjct: 416 SIVYNAIIDTLWDT 429



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 161/375 (42%), Gaps = 33/375 (8%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           S L+ +    G     L+V+E+M+  G+ PN++TYN L+D  G+  +  Q   + + M  
Sbjct: 175 SALMNVCIKCGQLKLALDVWEDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKF 234

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
            G+ P   TY +L+ A   +   +  L +Y EM+  G  L+ T YN L++  +  G   +
Sbjct: 235 QGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQ 294

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
             + +  M   + C+    T+SS+I+ C   G+   A   F+E L+    PN+    SLI
Sbjct: 295 VLDTYRQMV-QQGCERSVITYSSLISACEKSGEWQLALRFFDECLKDNCRPNVITFNSLI 353

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 364
               +  + +        + + G TPD         V+T T       L+   E+     
Sbjct: 354 TACAQGAQWEKARELFELMQQQGCTPD---------VVTYT------ALISAYER----- 393

Query: 365 GYVVKLLLEE-QDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 423
           G   +L L+  Q ++    K  + ++N+I   +    C         L+   +A  LL  
Sbjct: 394 GGKWQLALQAFQAMQAKGCKPDSIVYNAIIDTLWDTGCAWPQRQAAVLHRRASAGGLLR- 452

Query: 424 GLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK--ALESGEEFPPLLGIN 481
                        +P    L L +L+ G A  +L+ W++DL +  A E  +  P  + I 
Sbjct: 453 --------RAAHAAPGYLELCLHTLTAGVAALSLYTWLSDLRQKVATEGADALPTRIAIV 504

Query: 482 TGHGKHKYSDKGLAS 496
           TG G+ K  D   A+
Sbjct: 505 TGKGRGKDDDGASAA 519



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 69/147 (46%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           S  ++AG++      Y +   +        +S+LI     +G +   L  ++E      +
Sbjct: 284 SAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLKDNCR 343

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN+IT+N+L+    +  +  + + +++ M   G +P+  TY +L+ AY R    +  L  
Sbjct: 344 PNVITFNSLITACAQGAQWEKARELFELMQQQGCTPDVVTYTALISAYERGGKWQLALQA 403

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVG 240
           ++ M+ KG +    +YN ++    D G
Sbjct: 404 FQAMQAKGCKPDSIVYNAIIDTLWDTG 430



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           V  Y   +++C      + A E+  DM+     Q +  T S+++ +C   G++  A  ++
Sbjct: 136 VYTYTAAISICVSAQQLERALELSADMQR-RGVQRNVHTHSALMNVCIKCGQLKLALDVW 194

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            +M   G  PN+    +LI  YGK  + +  ++ L R+   GI P  R
Sbjct: 195 EDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTR 242



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  L++  + +    D   ++ LI  Y   G +   L  ++ M+A G KP+ I YN +
Sbjct: 363 EKARELFELMQQQGCTPDVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPDSIVYNAI 422

Query: 163 LDTMGRAKRPW---QVKTIYKEMTDNGL 187
           +DT+      W   Q   +++  +  GL
Sbjct: 423 IDTLWDTGCAWPQRQAAVLHRRASAGGL 450


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 112/213 (52%), Gaps = 3/213 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ L+  +   GN      ++ E++++G  P++ TYN LL+   R + P   K +
Sbjct: 230 PNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEV 289

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++ M + G+ P+  +Y  L+ A+GRA    D  +VY  MKE G + ++  +  LL+  A 
Sbjct: 290 FQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAK 349

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA  +  ++++S   +PD++ F+S+++     G++ E E++   M+ +  +P++ 
Sbjct: 350 AGKVTEAERLVREIENS-GVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDIS 408

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            L +LI  Y +    +      N L   G+TPD
Sbjct: 409 TLNTLINAYAQGGYIEKAEEVFNSLESKGLTPD 441



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 127/263 (48%), Gaps = 3/263 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R GN   A  ++   ++  +  D   ++ L++ Y    +  G   V++ M   GV+P+ 
Sbjct: 243 AREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQ 302

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++YN L+D  GRA      + +Y  M + G  P   ++  LL +Y +A    +   + RE
Sbjct: 303 VSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVRE 362

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++  G++    ++N+LL+   + G  DE   + E M SS   +PD  T +++I   +  G
Sbjct: 363 IENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSV-AKPDISTLNTLINAYAQGG 421

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + +AE +FN +   G  P++   TSL+  Y + +     V    ++ + G  PD     
Sbjct: 422 YIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAK 481

Query: 337 CLLNVMTQTPKEELGKLVECVEK 359
             L+   ++P E++ ++ + +E+
Sbjct: 482 VFLSS-CRSP-EQVKEVTDMIER 502



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 1/223 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           N F+ +I +YG A   D   +++  M+     PN+ TY  L++   R     + + I+ E
Sbjct: 198 NTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAE 257

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +   G  P+  TY +LL AY R  +      V++ M E G++     YN L+      G 
Sbjct: 258 LQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGL 317

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
           T +A  +++ MK +   +P   +   +++  +  GKV+EAE +  E+  +G +P+ F+  
Sbjct: 318 TADAQAVYDSMKEA-GFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFN 376

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           SL+  YG + R D++   L  +      PD      L+N   Q
Sbjct: 377 SLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQ 419



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 114/251 (45%), Gaps = 11/251 (4%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI---------TYNNLLDTMGRAKRPW 173
           +F+ L+  Y      +    ++ EMK     P  +         TYN  L+ +G++ R  
Sbjct: 120 SFNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLS 179

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           Q +  +++M   G+ P  NT+  ++  YG+A Y +    ++R M++     ++  Y  L+
Sbjct: 180 QAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALM 239

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
              A  G    A EIF +++S     PD +T+++++   S     + A+ +F  M+EAG 
Sbjct: 240 NAHAREGNCVRAEEIFAELQSV-GFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGV 298

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGK 352
            P+      LI  +G+A  T D     + + E G  P  +    LL+   +  K  E  +
Sbjct: 299 RPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAER 358

Query: 353 LVECVEKSNSK 363
           LV  +E S  K
Sbjct: 359 LVREIENSGVK 369



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 53/227 (23%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQ------------------------------------VK 176
           KP++  +N L+D  G++K+ W+                                     +
Sbjct: 80  KPDVGCFNMLIDAYGKSKQ-WREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAE 138

Query: 177 TIYKEMTDNGLSPN------------WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            ++ EM ++  SP             +NTY  +L   GR    EDT   +R+M+++G+  
Sbjct: 139 KLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDT---FRDMQKQGILP 195

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  +  ++ +     Y+D+A ++F  M+ +  C P+ +T+++++   +  G    AE +
Sbjct: 196 AVNTFTIMINIYGKAYYSDKADDLFRSMRKAL-CPPNLYTYTALMNAHAREGNCVRAEEI 254

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           F E+   GF P+++   +L++ Y + +           + E G+ PD
Sbjct: 255 FAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPD 301


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 133/307 (43%), Gaps = 44/307 (14%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG +  A  L D A       D  A++ L+  +  AG F   + V+  M   GV+P +
Sbjct: 152 ARAGRLAEASALLDAAPGP----DAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAI 207

Query: 157 ITYNNLLDTMGRAKRPW------------------------------------QVKTIYK 180
           +TYN +L    +   PW                                    +   ++ 
Sbjct: 208 VTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFD 267

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM  +G  P+  T+ SLL  YG+AR  ++ + V +EM+  G   SV  YN+L++     G
Sbjct: 268 EMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDG 327

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             ++A  + ++M+  +  +PD  T++++I+     GK+  A   ++EM+  G +PNL   
Sbjct: 328 LLEQAVALKQEME-VKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 386

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
            +LI+ +G   +  +++   + L   G  PD      LL V  Q     L   V  V K 
Sbjct: 387 NALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQN---GLDSEVSGVFKE 443

Query: 361 NSKLGYV 367
             K GY+
Sbjct: 444 MKKAGYI 450



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 113/212 (53%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI        +     V++EMKA G +P+ +T+N+LLD  G+A+R  +   + 
Sbjct: 242 DRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVI 301

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM   G  P+  TY SL+ +Y +    E  +++ +EM+ KG++  V  Y TL++     
Sbjct: 302 QEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRA 361

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A   +++M  +  C+P+  T++++I +   RGK  E  A+F+E+  AGF P++  
Sbjct: 362 GKIDAAIVEYDEMVRN-GCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVT 420

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +L+  +G+     +V      + + G  P+
Sbjct: 421 WNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 452



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 116/207 (56%), Gaps = 1/207 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG ++ A   YD       + +   ++ LIK++G  G F   + V++E+++ G  P+++
Sbjct: 360 RAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIV 419

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM   G  P  +TY SL+ +Y R    +  + +Y+ M
Sbjct: 420 TWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRM 479

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   V+ YN +L+  A  G  ++A ++F +M+   +C+PD +++SS++   +   +
Sbjct: 480 MEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME-ERDCKPDEYSYSSLLHAYANAKR 538

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           + + +A+ +++     EP+ +++ +L+
Sbjct: 539 LDKMKALSDDIYSERIEPHNWLVKTLV 565



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 128/260 (49%), Gaps = 2/260 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++D  +   +  D   F++L+ +YG A   D  + V +EM+ +G  P+++TYN+L+ 
Sbjct: 262 AAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLIS 321

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +  +     Q   + +EM   G+ P+  TY +L+    RA   +  +  Y EM   G + 
Sbjct: 322 SYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKP 381

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           ++  YN L+ M    G   E   +F++++S+    PD  T+++++ +    G  SE   +
Sbjct: 382 NLCTYNALIKMHGVRGKFPEMMAVFDELRSA-GFVPDIVTWNTLLAVFGQNGLDSEVSGV 440

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           F EM +AG+ P      SLI  Y +    D  ++   R+ E GI PD      +L+ + +
Sbjct: 441 FKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALAR 500

Query: 345 TPK-EELGKLVECVEKSNSK 363
             + E+  KL   +E+ + K
Sbjct: 501 GGRWEQAEKLFAEMEERDCK 520



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 3/219 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G +E A  L      +  + D   ++TLI     AG  D  +  Y+EM   G KPN+
Sbjct: 324 VKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNL 383

Query: 157 ITYNNLLDTMG-RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            TYN L+   G R K P ++  ++ E+   G  P+  T+ +LL  +G+     +   V++
Sbjct: 384 CTYNALIKMHGVRGKFP-EMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFK 442

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK+ G       Y +L++  +  G  D A +I++ M  +    PD  T++++++  +  
Sbjct: 443 EMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEA-GIYPDVSTYNAVLSALARG 501

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           G+  +AE +F EM E   +P+ +  +SL+  Y  A+R D
Sbjct: 502 GRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLD 540



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 117/272 (43%), Gaps = 36/272 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  ++A  +Y R        D + ++ ++      G ++    ++ EM+    KP+ 
Sbjct: 464 SRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDE 523

Query: 157 ITYNNLLDTMGRAKR-------------------PWQVKTI----------------YKE 181
            +Y++LL     AKR                    W VKT+                + E
Sbjct: 524 YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 583

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +     S + N   +++  YG+ R       +   MKE  + LS   YN+L+ M + +G 
Sbjct: 584 LRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGD 643

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++   I  ++KSS   +PD ++++++I     +G++ EA  +F+EM  +G +P++    
Sbjct: 644 CEKCENILTEIKSS-GVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYN 702

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             ++ Y      ++ +  +  +   G  P++R
Sbjct: 703 IFVKSYVSNSMFEEAIELVRYMVTQGCKPNER 734



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 1/121 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++L+ +Y   G+ + C N+  E+K+ GV+P+  +YN ++   GR  +  +   ++ EM 
Sbjct: 631 YNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK 690

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
            +GL P+  TY   +++Y      E+ + + R M  +G + +   YN+++   C +   T
Sbjct: 691 CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLT 750

Query: 243 D 243
           D
Sbjct: 751 D 751


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTI 178
           D   +S L+  Y  AG ++    + +EM+A GVKP+   ++ +L    R +  WQ    +
Sbjct: 333 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF-RDRGDWQKAFAV 391

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM  +G+ P+ + Y  ++  +G+       +  + +M+E+G++  V  +NTL+     
Sbjct: 392 LREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCK 451

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D A E+FE+M+ S NC P + T++ MI +   +      EAM +EM E G  PN+ 
Sbjct: 452 GGRHDRAAELFEEMRES-NCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNII 510

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 511 TYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ 556



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 2/224 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           NA + LI   GTAG       ++ E    G +KP    YN LL    R       + +  
Sbjct: 264 NAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLD 323

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM+  G++P+  TY+ L+ AY RA   E    + +EM+  G++ S  +++ +LA   D G
Sbjct: 324 EMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 383

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +AF +  +M++S   +PD   ++ MI        +  A   FN+M E G EP++   
Sbjct: 384 DWQKAFAVLREMQAS-GVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTW 442

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            +LI  + K  R D        + E    P       ++N++ +
Sbjct: 443 NTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGE 486



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/263 (20%), Positives = 115/263 (43%), Gaps = 27/263 (10%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G  P SY++        S++     D   G+ + AF +    +    R D + ++ +I  
Sbjct: 364 GVKPSSYVF--------SRILAGFRDR--GDWQKAFAVLREMQASGVRPDRHFYNVMIDT 413

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +G        ++ + +M+  G++P+++T+N L+D   +  R  +   +++EM ++   P 
Sbjct: 414 FGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPG 473

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY  ++   G   + E   ++  EMKE+G+  ++  Y TL+ +    G   EA +  E
Sbjct: 474 TTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIE 533

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            MK ++  +P    + +++                N   + G  P++   T+L++   + 
Sbjct: 534 AMK-ADGLKPSPTMYHALV----------------NAYAQRGLRPDVITYTTLMKALIRV 576

Query: 311 QRTDDVVRALNRLPELGITPDDR 333
           ++ D V      +   G  PD +
Sbjct: 577 EQFDKVPVIYEEMITSGCAPDRK 599



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 118/262 (45%), Gaps = 13/262 (4%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 238
           + ++   P+  +Y+ LL +    R   D   + R   +++E  ++    L++ L++  A 
Sbjct: 181 LREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFAR 240

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 297
               D A E+    ++     P S   +++I+     G+V+EAEA+F E   AG  +P  
Sbjct: 241 AALPDAALELLASAQAI-GLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRT 299

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 356
               +L++ Y +     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 300 RAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359

Query: 357 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 413
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419

Query: 414 LENAC----KLLELGLTLEVYT 431
           L +A     K+ E G+  +V T
Sbjct: 420 LGHAMDAFNKMREEGIEPDVVT 441



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 19/93 (20%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-------------------NMITYNNLLD 164
           ++TL+ +YG +G +   ++  E MKA G+KP                   ++ITY  L+ 
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLRPDVITYTTLMK 571

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
            + R ++  +V  IY+EM  +G +P+    A L
Sbjct: 572 ALIRVEQFDKVPVIYEEMITSGCAPDRKARAML 604


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 1/243 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G + +   +Y      +  ++   F  +I      G F    +V E+MKA G  P++
Sbjct: 205 VKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSV 264

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITYN ++D   +A + ++   + KEM    + PN  T+  L+  + R         V+ E
Sbjct: 265 ITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEE 324

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+ +G+Q +V  YN+L+      G  DEA  + +D  S    +P+  T++++I     + 
Sbjct: 325 MQRQGLQPNVVTYNSLINGLCSNGKLDEALGL-QDKMSGMGLKPNVVTYNALINGFCKKK 383

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + EA  M +++ + G  PN+    +LI  YGKA R DD     + + + G+ P+     
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYN 443

Query: 337 CLL 339
           CL+
Sbjct: 444 CLI 446



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 108/210 (51%), Gaps = 1/210 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  NV  A  +++  + +  + +   +++LI    + G  D  L + ++M  +G+KPN++
Sbjct: 311 RDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVV 370

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   + K   + + +  ++   GL+PN  T+ +L+ AYG+A   +D   +   M
Sbjct: 371 TYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMM 430

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+  +V+ YN L+      G   EA ++ ++M+ +   + D  T++ ++     +G+
Sbjct: 431 LDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN-GLKADLVTYNILVDALCKKGE 489

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
             +A  + +EM E G  P+     +LI  Y
Sbjct: 490 TRKAVRLLDEMFEVGLNPSHLTYNALIDGY 519



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 94/200 (47%), Gaps = 17/200 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ AF L     +     + + ++ LI  +   GN      + +EM+  G+K +++
Sbjct: 416 KAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLV 475

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D + +     +   +  EM + GL+P+  TY +L+  Y R       L+V   M
Sbjct: 476 TYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLM 535

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++KG + ++  YN L+    + G  +EA  +  +M   +   P+  T+            
Sbjct: 536 EKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEM-LEKGLIPNRTTY------------ 582

Query: 278 VSEAEAMFNEMLEAGFEPNL 297
               + + +EM+E GF P++
Sbjct: 583 ----DILRDEMMEKGFIPDI 598


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 1/243 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G + +   +Y      +  ++   F  +I      G F    +V E+MKA G  P++
Sbjct: 205 VKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSV 264

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITYN ++D   +A + ++   + KEM    + PN  T+  L+  + R         V+ E
Sbjct: 265 ITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEE 324

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+ +G+Q +V  YN+L+      G  DEA  + +D  S    +P+  T++++I     + 
Sbjct: 325 MQRQGLQPNVVTYNSLINGLCSNGKLDEALGL-QDKMSGMGLKPNVVTYNALINGFCKKK 383

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + EA  M +++ + G  PN+    +LI  YGKA R DD     + + + G+ P+     
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYN 443

Query: 337 CLL 339
           CL+
Sbjct: 444 CLI 446



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 120/237 (50%), Gaps = 4/237 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  NV  A  +++  + +  + +   +++LI    + G  D  L + ++M  +G+KPN++
Sbjct: 311 RDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVV 370

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   + K   + + +  ++   GL+PN  T+ +L+ AYG+A   +D   +   M
Sbjct: 371 TYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMM 430

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+  +V+ YN L+      G   EA ++ ++M+ +   + D  T++ ++     +G+
Sbjct: 431 LDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN-GLKADLVTYNILVDALCKKGE 489

Query: 278 VSEAEAMFNEML---EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +A  + +EM    + G   N+     LI+ +    + ++  R LN + E G+ P+
Sbjct: 490 TRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPN 546



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ AF L     +     + + ++ LI  +   GN      + +EM+  G+K +++
Sbjct: 416 KAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLV 475

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMT---DNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           TYN L+D + +     +   +  EMT     G   N  TY  L++ +      E+   + 
Sbjct: 476 TYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLL 535

Query: 215 REMKEKGMQLSVTLYNTL 232
            EM EKG+  + T Y+ L
Sbjct: 536 NEMLEKGLIPNRTTYDIL 553


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 115/226 (50%), Gaps = 2/226 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           FS +++ Y  A  FD  +  +  M+  GV  N+  +N+LL  + ++K   + + I+ +M 
Sbjct: 141 FSIIMRKYARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKM- 199

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +N  SP+  TY+ LL  +GRA        VY +M   G Q  +  Y  ++      G  +
Sbjct: 200 NNRFSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVE 259

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  + +DM SS  CQP ++ +S ++       ++ +A A F +M + G  P++ V  +L
Sbjct: 260 EAVCVVQDM-SSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNAL 318

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           +  + K ++ D+  R ++ +   GI+P+ R    +LN +    K++
Sbjct: 319 VTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDD 364



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 2/193 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++ NV  A  ++D+  N ++  D   +S L++ +G A N      VY +M A G +P+++
Sbjct: 185 KSKNVRKAQEIFDKM-NNRFSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIV 243

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D + +  R  +   + ++M+  G  P    Y+ L+  YG     ED ++ + +M
Sbjct: 244 TYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDM 303

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G+   V +YN L+     V   D AF + +DM+      P+S T++ ++      GK
Sbjct: 304 EKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDME-GHGISPNSRTWNIILNTLISLGK 362

Query: 278 VSEAEAMFNEMLE 290
             EA  +F  M++
Sbjct: 363 DDEAYRVFRNMIK 375



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 36/215 (16%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G    + +Y+ ++ ++ + ++   +  +   M   G++ N  T++ ++R Y RA+  ++ 
Sbjct: 99  GCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKEGVA-NVETFSIIMRKYARAQKFDEA 157

Query: 211 LSVYREMKEKGMQLSVTLYNTLL-AMC--ADVGYTDEAF--------------------- 246
           +  +  M+  G+  ++  +N+LL A+C   +V    E F                     
Sbjct: 158 VYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKMNNRFSPDAKTYSILLEGW 217

Query: 247 ----------EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                     E++ DM ++  CQPD  T+  M+      G+V EA  +  +M   G +P 
Sbjct: 218 GRAPNLPKMREVYSDMLAA-GCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPT 276

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            F+ + L+  YG   R +D V     + + GI PD
Sbjct: 277 TFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPD 311


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 186/418 (44%), Gaps = 19/418 (4%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++ D + +++++K+Y    +F     +Y+ +K  G++P+  TYN L+    R  RP +  
Sbjct: 951  FKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGL 1010

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             +  EM   GL P  +TY SL+ ++G+ +  E    ++ E++  G +L  + Y+ ++ + 
Sbjct: 1011 VLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIY 1070

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             + G   +A  +F  MK  E  +P   T   ++      G+  EAE + + + E     +
Sbjct: 1071 RNSGSHSKAQRLFSMMK-DEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLS 1129

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV--MTQTPKEELGKLV 354
                +S+I  Y +    +  ++ L ++ E G+ PD R   C +    ++Q   E +  L+
Sbjct: 1130 TLPYSSVIDAYVRNGDYNAGIQKLKQVKEEGLEPDHRIWTCFIRAASLSQHTSEAI-LLL 1188

Query: 355  ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLL 414
              +  +   L   ++LL E+ +          E+  ++  +    + N L DL     L 
Sbjct: 1189 NALRDTGFDLP--IRLLTEKPEPLVSALDLCLEMLETLGDNAAFNFVNALEDLLWAFELR 1246

Query: 415  ENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEE 473
              A  +  L +  ++Y  D+   +   W    + LS GAAL A          +L+   E
Sbjct: 1247 ATASWVFLLAIKRKIYRHDVFRVADKDWGADFRKLSGGAALDA----------SLQGCPE 1296

Query: 474  FPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 531
             P  + + TG    +Y+   L S  ++ L E+ +PF     + G  +    + K WL+
Sbjct: 1297 SPKSVALITGTA--EYNMVSLDSTLKACLWEMGSPFLPCKTRSGLLIAKAHSLKMWLK 1352



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 1/238 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L    R    R D   ++TLI     A N +  +NV+++M A   +P++ TYN ++
Sbjct: 311 LAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMI 370

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR     + + ++ ++   G  P+  +Y S L A+ R    E    +  EM + G  
Sbjct: 371 SVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFG 430

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M    G  D A +++ DMKSS    PD  T++ +I       K+ EA  
Sbjct: 431 KDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGR-NPDVITYTVLIDSLGKTNKIEEAAG 489

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           M +EML  G +P L   ++LI  Y KA +  +     + +   G  PD      +L++
Sbjct: 490 MMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDI 547



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 137/303 (45%), Gaps = 12/303 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RA N+E A  ++D         D   ++ +I +YG  G       ++ ++++ G  P+ 
Sbjct: 339 SRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDA 398

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++YN+ L    R     +VK I +EM   G   +  TY +++  YG+    +  L +YR+
Sbjct: 399 VSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRD 458

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G    V  Y  L+         +EA  +  +M ++   +P   T+S++I   +  G
Sbjct: 459 MKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNT-GVKPTLRTYSALICGYAKAG 517

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDR 333
           K  EAE  F+ ML +G  P+    + ++  +    R ++  RA+    E+   GI P+  
Sbjct: 518 KPVEAEETFDCMLRSGTRPDQLAYSVMLDIH---LRFNEPKRAMTFYKEMIHDGIMPEHS 574

Query: 334 FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
               +L  +    K E++G++V  +E+        +  +L    ++GD   EA ++    
Sbjct: 575 LYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISYIL----VKGDCYDEAAKMLRRA 630

Query: 393 SKD 395
             D
Sbjct: 631 ISD 633



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 125/336 (37%), Gaps = 75/336 (22%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +G+ G S K+    N    R       SY++      R GNVE    + +      +  D
Sbjct: 373 YGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKD 432

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              ++T+I +YG  G  D  L +Y +MK+ G  P++ITY  L+D++G+  +  +   +  
Sbjct: 433 EMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMS 492

Query: 181 EMTDNGLSPNWNTYASLLRAYGRA---------------------------------RYG 207
           EM + G+ P   TY++L+  Y +A                                 R+ 
Sbjct: 493 EMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFN 552

Query: 208 E--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
           E    ++ Y+EM   G+    +LY  +L    +    ++   +  DM+  E C  +    
Sbjct: 553 EPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDME--EVCGMNPQAI 610

Query: 266 SSMITICSC--------------------------------RGKVSEAEAMFNEMLEAGF 293
           S ++    C                                 G+ S A  +   + E   
Sbjct: 611 SYILVKGDCYDEAAKMLRRAISDRYEIDRENLLSILSSYSSSGRHSVALDLLELLKEHTP 670

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
             +  +  +L+    KAQ+ D  ++  +   ELG T
Sbjct: 671 RSSQMITEALVVMLCKAQQLDTALKEYSNSRELGFT 706



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 107/232 (46%), Gaps = 5/232 (2%)

Query: 122  NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
            + +  +I+ YG    +    +V   M+   +  N   +N L++    +    + + ++  
Sbjct: 781  SVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVFNT 840

Query: 182  MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
            M  +G SP  ++   LL+A       E+   V +E+++ G ++S +    +L   A  G 
Sbjct: 841  MMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGN 900

Query: 242  TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVL 300
              E  +I+  MK++    P    +  M  +  CRGK V + EAM +EM EAGF+P+L + 
Sbjct: 901  IFEVKKIYHGMKAA-GYFPSMHLYRVMAQLL-CRGKQVRDVEAMLSEMEEAGFKPDLSIW 958

Query: 301  TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ--TPKEEL 350
             S+++ Y          +   R+ E G+ PD+     L+ +  +   PKE L
Sbjct: 959  NSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGL 1010



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/281 (19%), Positives = 117/281 (41%), Gaps = 43/281 (15%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGR 168
           D   + K ++ P  F  ++K  G   ++     VYE +       PN    + +L  +G+
Sbjct: 176 DVLDDRKVQMTPTDFCFVVKSVGQE-SWHRAFEVYEWLNLRHWYSPNARMLSTILAVLGK 234

Query: 169 A-KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA----------------------- 204
           A + P  V+   +   +  +      Y +++  Y R+                       
Sbjct: 235 ANQEPLAVEVFTR--AEPSVENTVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLV 292

Query: 205 ----------RYGEDT----LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
                     + GE T    + +  E++  G++  +  YNTL++ C+     +EA  +F+
Sbjct: 293 SFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFD 352

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           DM  + +C+PD WT+++MI++    G   +AE +FN++   GF P+     S +  + + 
Sbjct: 353 DM-VAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFARE 411

Query: 311 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
              + V      + ++G   D+     ++++  +  + +L 
Sbjct: 412 GNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLA 452



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/154 (18%), Positives = 76/154 (49%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            VE A  L++  ++   ++D + +  ++K+Y  +G+      ++  MK  GV+P + T + 
Sbjct: 1041 VEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHL 1100

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            L+ + G + +P + + +   + +   + +   Y+S++ AY R       +   +++KE+G
Sbjct: 1101 LMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDYNAGIQKLKQVKEEG 1160

Query: 222  MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
            ++    ++   +   +   +T EA  +   ++ +
Sbjct: 1161 LEPDHRIWTCFIRAASLSQHTSEAILLLNALRDT 1194



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 45/251 (17%), Positives = 104/251 (41%), Gaps = 5/251 (1%)

Query: 84  SPRASKLKEKSYDT---RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 140
           +PR+S++  ++      +A  ++ A   Y  +R   +      F  LI+       F   
Sbjct: 669 TPRSSQMITEALVVMLCKAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCLENELFTEA 728

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK-EMTDNGLSPNWNTYASLLR 199
             V+ +M+  G+K +   Y +++    +   P     +     TD  +  N + Y  ++ 
Sbjct: 729 SQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISVYVDVIE 788

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
           AYGR +  +   SV   M++  + ++  ++N L+   A  G  + A  +F  M   +   
Sbjct: 789 AYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVFNTMM-KDGPS 847

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           P   + + ++      G++ E   +  E+ + GF+ +   +  ++  + +A    +V + 
Sbjct: 848 PTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKI 907

Query: 320 LNRLPELGITP 330
            + +   G  P
Sbjct: 908 YHGMKAAGYFP 918


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTI 178
           D   +S L+  Y  AG ++    + +EM+A GVKP+   ++ +L    R +  WQ    +
Sbjct: 333 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF-RDRGDWQKAFAV 391

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM  +G+ P+ + Y  ++  +G+       +  + +M+E+G++  V  +NTL+     
Sbjct: 392 LREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCK 451

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D A E+FE+M+ S NC P + T++ MI +   +      EAM +EM E G  PN+ 
Sbjct: 452 GGRHDRAAELFEEMRES-NCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNII 510

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 511 TYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ 556



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 122/261 (46%), Gaps = 11/261 (4%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G  P SY++        S++     D   G+ + AF +    +    R D + ++ +I  
Sbjct: 364 GVKPSSYVF--------SRILAGFRDR--GDWQKAFAVLREMQASGVRPDRHFYNVMIDT 413

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +G        ++ + +M+  G++P+++T+N L+D   +  R  +   +++EM ++   P 
Sbjct: 414 FGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPG 473

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY  ++   G   + E   ++  EMKE+G+  ++  Y TL+ +    G   EA +  E
Sbjct: 474 TTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIE 533

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            MK ++  +P    + +++   + RG    A  +   M   G E ++ VL SLI  +G+ 
Sbjct: 534 AMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGED 592

Query: 311 QRTDDVVRALNRLPELGITPD 331
           +R  +    L  + E G+ PD
Sbjct: 593 RRVVEAFSVLQFMRENGLRPD 613



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 1/229 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A   +++ R E    D   ++TLI  +   G  D    ++EEM+     P   TYN +++
Sbjct: 423 AMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMIN 482

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G  +    V+ +  EM + GL PN  TY +L+  YGR+   ++ +     MK  G++ 
Sbjct: 483 LLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP 542

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y+ L+   A  G  D A  + + MK ++  +      +S+I       +V EA ++
Sbjct: 543 SPTMYHALVNAYAQRGLADHALNVVKAMK-ADGLEVSILVLNSLINAFGEDRRVVEAFSV 601

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
              M E G  P++   T+L++   + ++ D V      +   G  PD +
Sbjct: 602 LQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRK 650



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 99/199 (49%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L++  R          ++ +I L G   +++G   +  EMK  G+ PN+I
Sbjct: 451 KGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNII 510

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  GR+ R  +     + M  +GL P+   Y +L+ AY +    +  L+V + M
Sbjct: 511 TYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM 570

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+++S+ + N+L+    +     EAF + + M+ +   +PD  T+++++       +
Sbjct: 571 KADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMREN-GLRPDVITYTTLMKALIRVEQ 629

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +   ++ EM+ +G  P+
Sbjct: 630 FDKVPVIYEEMITSGCAPD 648



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 2/224 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           NA + LI   GTAG       ++ E    G +KP    YN LL    R       + +  
Sbjct: 264 NAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLD 323

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM+  G++P+  TY+ L+ AY RA   E    + +EM+  G++ S  +++ +LA   D G
Sbjct: 324 EMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRG 383

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +AF +  +M++S   +PD   ++ MI        +  A   FN+M E G EP++   
Sbjct: 384 DWQKAFAVLREMQAS-GVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTW 442

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            +LI  + K  R D        + E    P       ++N++ +
Sbjct: 443 NTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGE 486



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 118/262 (45%), Gaps = 13/262 (4%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 238
           + ++   P+  +Y+ LL +    R   D   + R   +++E  ++    L++ L++  A 
Sbjct: 181 LREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFAR 240

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 297
               D A E+    ++     P S   +++I+     G+V+EAEA+F E   AG  +P  
Sbjct: 241 AALPDAALELLASAQAI-GLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRT 299

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 356
               +L++ Y +     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 300 RAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359

Query: 357 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 413
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419

Query: 414 LENAC----KLLELGLTLEVYT 431
           L +A     K+ E G+  +V T
Sbjct: 420 LGHAMDAFNKMREEGIEPDVVT 441



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            ++LI  +G         +V + M+  G++P++ITY  L+  + R ++  +V  IY+EM 
Sbjct: 582 LNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMI 641

Query: 184 DNGLSPNWNTYASL 197
            +G +P+    A L
Sbjct: 642 TSGCAPDRKARAML 655


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 1/226 (0%)

Query: 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
             L D  R +   +D   ++TLI        +     V++EM+A G +P+ +T N+LLD 
Sbjct: 232 LALVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDV 291

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
            G+A+R  +   + KEM   G  P+  TY SL+ +Y +    E+   +  EM+ KG++  
Sbjct: 292 YGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPD 351

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           V  Y TL++     G  D A   + +M  +  C+P+  T++++I +   RGK  E   +F
Sbjct: 352 VITYTTLVSGLDRAGKIDAAIGTYNEMLRN-GCKPNLCTYNALIKLHGVRGKFPEMMIVF 410

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +E+  AGF P++    +L+  +G+     +V      + + G  P+
Sbjct: 411 DEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPE 456



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 40/284 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW------ 173
           D +A++ LI     A  F   + V+  M A GV P ++TYN +L    +   PW      
Sbjct: 175 DASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLAL 234

Query: 174 ------------------------------QVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
                                         +   ++ EM   G  P+  T  SLL  YG+
Sbjct: 235 VDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGK 294

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           AR  ++ + V +EM++ G   SV  YN+L++     G  +EA ++ E+M+  +  +PD  
Sbjct: 295 ARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEME-VKGIEPDVI 353

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T++++++     GK+  A   +NEML  G +PNL    +LI+ +G   +  +++   + +
Sbjct: 354 TYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEI 413

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV 367
              G  PD      LL V  Q     L   V  V K   K GYV
Sbjct: 414 RSAGFVPDVVTWNTLLAVFGQN---GLDTEVSGVFKEMKKSGYV 454



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 126/245 (51%), Gaps = 8/245 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG ++ A G Y+       + +   ++ LIKL+G  G F   + V++E+++ G  P+++
Sbjct: 364 RAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVV 423

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N LL   G+     +V  ++KEM  +G  P  +TY SL+ +Y R    +  + +Y+ M
Sbjct: 424 TWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRM 483

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   ++ YN +L+  A  G  ++A ++F +M++ ++ +PD  ++SS++   +   K
Sbjct: 484 IEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDS-RPDELSYSSLLHAYANAKK 542

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + + +++  ++     E +  ++ +L+    K     D  +A   L         R C  
Sbjct: 543 LDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRR-------RRCSL 595

Query: 338 LLNVM 342
            +NV+
Sbjct: 596 DINVL 600



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 102/199 (51%), Gaps = 5/199 (2%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG-RAKRPWQV 175
           I+P+   ++TL+     AG  D  +  Y EM   G KPN+ TYN L+   G R K P ++
Sbjct: 348 IEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFP-EM 406

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             ++ E+   G  P+  T+ +LL  +G+     +   V++EMK+ G       Y +L++ 
Sbjct: 407 MIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISS 466

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            +  G  D+A EI++ M  +    PD  T++++++  +  G+  +AE +F EM      P
Sbjct: 467 YSRCGLFDQAMEIYKRMIEA-GIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRP 525

Query: 296 NLFVLTSLIQCYGKAQRTD 314
           +    +SL+  Y  A++ D
Sbjct: 526 DELSYSSLLHAYANAKKLD 544



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%)

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT-DEAFE 247
           P+ + Y +L+ A  RA    D ++V+R M   G+  ++  YN +L + + +     E   
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           + + M+  +    D +T++++I+ C  R    EA  +F+EM  AGFEP+   L SL+  Y
Sbjct: 234 LVDSMRK-DGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVY 292

Query: 308 GKAQRTDDVVRALNRLPELGITP 330
           GKA+R D+ +  L  + + G  P
Sbjct: 293 GKARRYDEAIGVLKEMEQGGCPP 315



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 111/260 (42%), Gaps = 36/260 (13%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           G++   +   +  + + + +LI  Y   G FD  + +Y+ M   G+ P++ TYN +L  +
Sbjct: 443 GVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSAL 502

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR------------YGE------ 208
            R  R  Q + ++ EM +    P+  +Y+SLL AY  A+            Y E      
Sbjct: 503 ARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHN 562

Query: 209 -----------------DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
                            DT   + E++ +   L + + N ++++    G   +  EI   
Sbjct: 563 GLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSL 622

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           MK S +    + T++S++ + S  G   + E +  E+  +   P+ +   ++I  YG+  
Sbjct: 623 MKES-SINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKG 681

Query: 312 RTDDVVRALNRLPELGITPD 331
           +  +  R  + +   G+ PD
Sbjct: 682 QMKEASRLFSEMKCSGLVPD 701



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 122/279 (43%), Gaps = 36/279 (12%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G  + A  +Y R        D + ++ ++      G ++    ++ EM+ +  +P+ 
Sbjct: 468 SRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDE 527

Query: 157 ITYNNLLDTMGRAKRPWQVKT----IYKEMTD--NGL----------------------- 187
           ++Y++LL     AK+  ++K+    IY E  +  NGL                       
Sbjct: 528 LSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLE 587

Query: 188 ------SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
                 S + N   +++  YG+    +    +   MKE  + LS   YN+L+ M + +G 
Sbjct: 588 LRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGD 647

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++   I  ++KSS   +PD +++++MI     +G++ EA  +F+EM  +G  P++    
Sbjct: 648 CEKCENILTEIKSSR-ARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYN 706

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ Y      ++ +  +  +   G  P++R    +L 
Sbjct: 707 IFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQ 745



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R  +  +D N  + +I +YG  G       +   MK   +  +  TYN+L+    R    
Sbjct: 589 RRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDC 648

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + + I  E+  +   P+  +Y +++ AYGR    ++   ++ EMK  G+   +  YN  
Sbjct: 649 EKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIF 708

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           +         +EA ++   M  +  C+P+  T+++++      G++++ ++  + + E
Sbjct: 709 VKSYVANSMFEEAIDLVRYM-VTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPE 765


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 121/276 (43%), Gaps = 34/276 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  +++R + E+ +     F  +I+ +  AG+    L+  + M+  G  P ++
Sbjct: 510 KMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVM 569

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + R  +  +  ++  +M+  G++PN +TY  ++R Y  +         + ++
Sbjct: 570 TYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKI 629

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--------NCQPDSW------ 263
           KE G++L V +Y TLL  C   G    A  +  +M   +        N   D W      
Sbjct: 630 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 689

Query: 264 --------------------TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                               TF+S I  C   G +  AE +  EM + G +PN+   T+L
Sbjct: 690 WEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTL 749

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           I+ + K    D  ++    +   G+ PD+    CL+
Sbjct: 750 IKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLV 785



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 110/235 (46%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN++ A  L      +      + + +++  Y  A +   CL V+E +K  G +P++I
Sbjct: 370 QSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSII 429

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L++   +  +  +   + KEM  +G+  N  TY+ L+  +       +  S++ +M
Sbjct: 430 SYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDM 489

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+Q    +YN L+     +G  D A  IFE MK  E  QP + TF  +I   +  G 
Sbjct: 490 IKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMK-KERMQPSNRTFRPIIEGFAVAGD 548

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A    + M  +G  P +    +LI    +  + +  V  L+++   GI P++
Sbjct: 549 MKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNE 603



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G++  AF  + + +    ++D   + TL++    +G     L V  EM    +  N   
Sbjct: 616 SGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFI 675

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+D   R    W+   + K+M ++G+ PN +T+ S + A  +A   +   +V +EM 
Sbjct: 676 YNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMA 735

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G++ +V  + TL+   A V   D A + FE+MKS+   +PD   +  ++T    R  V
Sbjct: 736 DVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSA-GLKPDEAAYHCLVTSLLSRATV 794

Query: 279 SEA 281
            E 
Sbjct: 795 MEG 797



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 123/278 (44%), Gaps = 44/278 (15%)

Query: 95  YDTRAGNVEMAFGLYD--RARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAI 150
           Y  + G+   A   ++  RAR     I+PNAF  ++L+  Y  A +  G L+  EEMK+ 
Sbjct: 262 YYAKRGDKHHARATFENMRARG----IEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE 317

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE----------------------------- 181
           G++  ++TY+ L+   G+         ++KE                             
Sbjct: 318 GLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRA 377

Query: 182 ------MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
                 M ++G+    + Y S++  Y  A+  +  L V+  +KE G + S+  Y  L+ +
Sbjct: 378 EELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINL 437

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              +G   +A  + ++M+ S   + ++ T+S +I         + A ++F +M+++G +P
Sbjct: 438 YVKIGKVPKALAVSKEME-SHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQP 496

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           +  +   L++ + K    D  +R   R+ +  + P +R
Sbjct: 497 DRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNR 534



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 10/246 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +  + E A  L+  A+ +   ++   +S +I  +  +GN D    +  EM+  G+   + 
Sbjct: 335 KTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPID 394

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y++++     A+   +   +++ + + G  P+  +Y  L+  Y +       L+V +EM
Sbjct: 395 VYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEM 454

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G++ +   Y+ L+     +     AF IFEDM  S   QPD   ++ ++      G 
Sbjct: 455 ESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKS-GLQPDRAIYNLLVEAFCKMGN 513

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  +F  M +   +P+      +I+ +  A    D+ RAL+ L  +      R  GC
Sbjct: 514 MDRAIRIFERMKKERMQPSNRTFRPIIEGFAVA---GDMKRALDTLDLM------RRSGC 564

Query: 338 LLNVMT 343
              VMT
Sbjct: 565 APTVMT 570



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 1/217 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F  ++  Y   G+       +E M+A G++PN   + +L+     A+      +  +EM 
Sbjct: 256 FGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 315

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL     TY+ L+  YG+    E    +++E K K   L+  +Y+ ++      G  D
Sbjct: 316 SEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMD 375

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E+  +M+      P    + SM+   +      +   +F  + E GF P++     L
Sbjct: 376 RAEELVREMEEDGIDAPID-VYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCL 434

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           I  Y K  +    +     +   GI  +++    L+N
Sbjct: 435 INLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLIN 471



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 25/53 (47%)

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           +P    F  M+   + RG    A A F  M   G EPN FV TSL+  Y  A+
Sbjct: 250 KPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAR 302


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 124/276 (44%), Gaps = 34/276 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  + ++ + E+ +    AF  +I+ +  AG+    L++ + M+  G  P ++
Sbjct: 534 KMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVM 593

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + R  +  +  ++  +M+  G++PN +TY  ++R Y            + ++
Sbjct: 594 TYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKI 653

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--------NCQPDSW------ 263
           KE G++L V +Y TLL  C   G    A  +  +M S +        N   D W      
Sbjct: 654 KEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDV 713

Query: 264 --------------------TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                               T++S I  C   G +  A+ + +EM + G +PNL   T+L
Sbjct: 714 WEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTL 773

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           I+ + +A   D  ++    +   G+ PD+    CL+
Sbjct: 774 IKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLV 809



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN++ A  L      +      +A+ +++  Y    +   CL V+E +K     P++I
Sbjct: 394 QSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSII 453

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L++   +  +  +   I KEM  +G+  N  TY+ L+  +       +   ++ EM
Sbjct: 454 SYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEM 513

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+Q    +YN L+     +G  D A  I E M+  E  QP +  F  +I   +  G 
Sbjct: 514 LKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQ-KERMQPSNRAFRPIIEGFAVAGD 572

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A  + + M  +G  P +    +LI    +  + +  V  LN++   GITP++
Sbjct: 573 MKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNE 627



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 1/182 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G++  AF  + + +    ++D   + TL++    +G     L V  EM +  +  N   Y
Sbjct: 641 GDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVY 700

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   R    W+   + K+M ++G+ PN +TY S + A  +A   +   +V  EM +
Sbjct: 701 NILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSD 760

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++ ++  Y TL+   A     D A + FE+MK +   +PD   +  ++T    R  V 
Sbjct: 761 VGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLA-GLKPDEAAYHCLVTSLLSRATVM 819

Query: 280 EA 281
           E 
Sbjct: 820 EG 821



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 115/260 (44%), Gaps = 42/260 (16%)

Query: 111 RARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           RAR     I+PNAF  ++L+  Y  A +  G L+  EEMKA G++  ++TY+ L+   G+
Sbjct: 304 RARG----IEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGK 359

Query: 169 AKRPWQVKTIYK-----------------------------------EMTDNGLSPNWNT 193
                    ++K                                   EM ++G+    + 
Sbjct: 360 INDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDA 419

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           Y S++  Y   +  +  L V+  +KE     S+  Y  L+ +   +G   +A  I ++M+
Sbjct: 420 YHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEME 479

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
           SS   + ++ T+S +I+        + A  +F EML++G +P+  +   LI+ + K    
Sbjct: 480 SS-GIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNM 538

Query: 314 DDVVRALNRLPELGITPDDR 333
           D  +R L ++ +  + P +R
Sbjct: 539 DRAIRILEKMQKERMQPSNR 558



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 9/255 (3%)

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             +  ++ M   G+ PN   + SL+ AY  AR     LS   EMK +G++L++  Y+ L+
Sbjct: 295 HARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILI 354

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
           +    +  T  A  +F++ K++     +   +S++I      G +  AE + +EM E G 
Sbjct: 355 SGFGKINDTQSADNLFKEAKTNLG-DLNGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGI 413

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE----E 349
           +  +    S++  Y   Q     +    RL E   TP     GCL+N+  +  K      
Sbjct: 414 DAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIA 473

Query: 350 LGKLVEC--VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDL 407
           + K +E   ++ +N     ++   +   D    F+     L + +  D  +A  N LI+ 
Sbjct: 474 ISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPD--RAIYNLLIEA 531

Query: 408 CVNLNLLENACKLLE 422
              +  ++ A ++LE
Sbjct: 532 FCKMGNMDRAIRILE 546



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 6/173 (3%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +  TG   K++ +         KL    Y+T      ++G ++ A  +     ++K   +
Sbjct: 637 YAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARN 696

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              ++ LI  +   G+     ++ ++MK  GV PN+ TY + ++   +A    + +T+  
Sbjct: 697 TFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVID 756

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           EM+D GL PN  TY +L++ + RA   +  L  + EMK  G++     Y+ L+
Sbjct: 757 EMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLV 809



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 25/53 (47%)

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           +P    F  MI   + RG    A A F  M   G EPN FV TSL+  Y  A+
Sbjct: 274 KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAR 326


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 5/289 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR+GN++ A   ++  +      D   ++ LI+ Y   G     +N+  EM   G   ++
Sbjct: 376 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDV 435

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN +L  + + K   +   ++ EMT+ GL P+  T   L+  + +    ++ + ++++
Sbjct: 436 VTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKK 495

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MKEK ++L V  YNTLL     VG  D A EI+ DM S E   P   +FS ++     +G
Sbjct: 496 MKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE-ILPTPISFSILVNALCSKG 554

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +SEA  +++EM+    +P + +  S+I+ Y ++    D    L ++   G  PD   C 
Sbjct: 555 HLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPD---CI 611

Query: 337 CLLNVMTQTPKEE-LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384
               ++    KEE + K    V+K   K G +V  +     I   F +E
Sbjct: 612 SYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRE 660



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 179/415 (43%), Gaps = 50/415 (12%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A  +  A+  +   R++ + +  +A + LI      G  +    +Y+E+   GV  N+
Sbjct: 166 VQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNV 225

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T N +++ + +  +  +V T   E+ + G+ P+  TY +L+ AY      E+   +   
Sbjct: 226 YTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHA 285

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  KG    V  YNT++      G  + A E+F +M  S    PDS T+ S++     +G
Sbjct: 286 MPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPDSTTYRSLLMEACKKG 344

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--- 333
              E E +F++M      P+L   +S++  + ++   D  +   N + E G+ PD+    
Sbjct: 345 DAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 404

Query: 334 -----FC------------------GCLLNVMTQT-------PKEELGK----LVECVEK 359
                +C                  GC ++V+T          ++ LG+      E  E+
Sbjct: 405 ILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 464

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 419
                 Y + +L++     G+ +  A ELF  + +   K      +D+     LL+   K
Sbjct: 465 GLFPDSYTLTILIDGHCKLGNLQN-AMELFKKMKEKRIK------LDVVTYNTLLDGFGK 517

Query: 420 LLELGLTLEVYTDIQSR----SPTQWSLHLKSL-SLGAALTALHIWINDLSKALE 469
           + ++    E++ D+ S+    +P  +S+ + +L S G    A  +W   +SK+++
Sbjct: 518 VGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIK 572



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 112/238 (47%), Gaps = 1/238 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  L+ + + ++ ++D   ++TL+  +G  G+ D    ++ +M +  + P  I
Sbjct: 482 KLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPI 541

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +++ L++ +       +   ++ EM    + P      S+++ Y R+    D      +M
Sbjct: 542 SFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKM 601

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRG 276
             +G       YNTL+          +AF + + M+  +    PD +T++S++       
Sbjct: 602 ISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCREN 661

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           ++ EAEA+  +M+E G  P+    TSLI  +       +  R  + + + G +PDD+F
Sbjct: 662 QMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDDKF 719



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 74/165 (44%), Gaps = 1/165 (0%)

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N + +  L+R + +AR   +    +  ++ KG  +S+   N L+     +G+ + A+ I+
Sbjct: 154 NDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIY 213

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           +++ S      + +T + M+      GK+ +     +E+ E G  P++    +LI  Y  
Sbjct: 214 QEI-SRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSS 272

Query: 310 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
               ++    ++ +P  G +P       ++N + +  K E  K V
Sbjct: 273 QGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEV 317


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 123/250 (49%), Gaps = 4/250 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  + A+  +   R E  R D    + +I   G AG  D  + ++EEM  +   P+++
Sbjct: 308 KAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVV 367

Query: 158 TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +  +K R  ++ + ++ M  +G+SP+  TY+ L+  + +    E  + +  E
Sbjct: 368 TYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEE 427

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCR 275
           M EKG       Y +L+         D A E+F+++K  ENC   S   ++ MI      
Sbjct: 428 MDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELK--ENCGSSSARVYAVMIKHLGKA 485

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G++ +A  +F+EM + G  PN++   +L+    +A   D+ +  + R+ E G  PD    
Sbjct: 486 GRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSY 545

Query: 336 GCLLNVMTQT 345
             +LN + +T
Sbjct: 546 NIILNGLAKT 555



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 113/229 (49%), Gaps = 2/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EM   + +  RN    + P   S +I++ G A      + ++ ++K    +P    YN++
Sbjct: 137 EMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSM 196

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  +    +  +V  +Y EM++ G   P+  TY++L+ A+ +    +  + +  EMK+ G
Sbjct: 197 IIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNG 256

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           MQ +  +Y  L+A+   +     A  +FE+M+  + C+PD +T++ +I      G+  EA
Sbjct: 257 MQPTAKIYTMLIALFFKLNNVHGALGLFEEMR-HQYCRPDVFTYTELIRGLGKAGRFDEA 315

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              F+EM   G  P+  V+ ++I   GKA R DD V+    +  L   P
Sbjct: 316 YNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIP 364



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 6/299 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G  E    LY+   NE     D   +S LI  +   G  D  + +  EMK  G++P    
Sbjct: 204 GQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKI 263

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +         +++EM      P+  TY  L+R  G+A   ++  + + EM+
Sbjct: 264 YTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMR 323

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGK 277
            +G +    + N ++      G  D+A ++FE+M + + C P   T++++I  +   + +
Sbjct: 324 REGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQ-CIPSVVTYNTIIKALFESKSR 382

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +SE  + F  M  +G  P+ F  + LI  + K  RT+  +  L  + E G  P       
Sbjct: 383 ISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCS 442

Query: 338 LLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
           L++ + +  + ++      E  E   S    V  ++++     G    +A  LF+ ++K
Sbjct: 443 LIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRL-DDAVNLFDEMNK 500



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 1/190 (0%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P A+ +LI   G A  +D    +++E+K      +   Y  ++  +G+A R      ++ 
Sbjct: 437 PAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFD 496

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM   G +PN   Y +L+    RA   ++ L+  R M+E G    +  YN +L   A  G
Sbjct: 497 EMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTG 556

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
               A E+  +MK S   +PD+ ++++++   S  G   EA  +  EM   GFE +L   
Sbjct: 557 GPHRAMEMLSNMKQSA-IKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITY 615

Query: 301 TSLIQCYGKA 310
           +S+++  GK 
Sbjct: 616 SSILEAIGKV 625



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 2/218 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L +  ++   +     ++ LI L+    N  G L ++EEM+    +P++ 
Sbjct: 238 KLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVF 297

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +G+A R  +    + EM   G  P+     +++   G+A   +D + ++ EM
Sbjct: 298 TYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEM 357

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
                  SV  YNT++ A+        E    FE MK S    P  +T+S +I       
Sbjct: 358 GTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGS-GISPSPFTYSILIDGFCKTN 416

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           +  +A  +  EM E GF P      SLI   GKA+R D
Sbjct: 417 RTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 454



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   ++A  L+   +          ++ +IK  G AG  D  +N+++EM  +G  PN+ 
Sbjct: 449 KAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVY 508

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+  + RA    +  T  + M ++G  P+ N+Y  +L    +       + +   M
Sbjct: 509 AYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 568

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           K+  ++     YNT+L   +  G  +EA ++ ++M +    + D  T+SS++
Sbjct: 569 KQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEM-NVLGFEYDLITYSSIL 619



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 45/224 (20%)

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
           + ++R  G A+     ++++ ++K +  Q +   YN+++ M    G  ++  E++ +M +
Sbjct: 159 SDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSN 218

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-------------------- 294
             +C PD+ T+S++I+     G+   A  + NEM + G +                    
Sbjct: 219 EGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVH 278

Query: 295 ---------------PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
                          P++F  T LI+  GKA R D+     + +   G  PD      ++
Sbjct: 279 GALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMI 338

Query: 340 NVMTQTPK--------EELGKLVECVEKSNSKLGYVVKLLLEEQ 375
           N + +  +        EE+G L +C+  S      ++K L E +
Sbjct: 339 NFLGKAGRLDDAVKLFEEMGTL-QCI-PSVVTYNTIIKALFESK 380



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 4/146 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +AG ++ A  L+D     K    PN  A++ L+     AG  D  L     M+  G  P+
Sbjct: 484 KAGRLDDAVNLFDEM--NKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPD 541

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + +YN +L+ + +   P +   +   M  + + P+  +Y ++L A   A   E+   + +
Sbjct: 542 INSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMK 601

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGY 241
           EM   G +  +  Y+++L     V +
Sbjct: 602 EMNVLGFEYDLITYSSILEAIGKVDH 627


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTI 178
           D   +S L+  Y  AG ++    + +EM+A GVKP+   ++ +L    R +  WQ    +
Sbjct: 340 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF-RDRGDWQKAFAV 398

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM  +G+ P+ + Y  ++  +G+       +  +  M+E+G++  V  +NTL+     
Sbjct: 399 LREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRK 458

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D A E+FE+M+ S NC P + T++ MI +   + +    E M +EM E G  PN+ 
Sbjct: 459 GGRHDRAMELFEEMRES-NCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNII 517

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 518 TYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQ 563



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 1/229 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A   ++R R E    D   ++TLI  +   G  D  + ++EEM+     P   TYN +++
Sbjct: 430 AMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMIN 489

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G  +R   V+T+  EM + GL PN  TY +L+  YGR+   ++ +     MK  G++ 
Sbjct: 490 LLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKP 549

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y+ L+   A  G  D A  + + M+ ++  +  +   +S++       +V EA ++
Sbjct: 550 SPTMYHALVNAYAQRGLADHALNVVKAMR-ADGLEASTVVLNSLMNAFGEDRRVVEAFSV 608

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
              M E    P++   T+L++   + ++ D V      +   G  PD +
Sbjct: 609 LQFMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCAPDRK 657



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 116/261 (44%), Gaps = 11/261 (4%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G  P SY++        S++     D   G+ + AF +         + D + ++ +I  
Sbjct: 371 GVKPSSYVF--------SRILAGFRDR--GDWQKAFAVLREMHASGVQPDRHFYNVMIDT 420

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +G        ++ +  M+  G++P+++T+N L+D   +  R  +   +++EM ++   P 
Sbjct: 421 FGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPG 480

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY  ++   G         ++  EMKE+G+  ++  Y TL+ +    G   EA E  E
Sbjct: 481 TTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIE 540

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            MK ++  +P    + +++   + RG    A  +   M   G E +  VL SL+  +G+ 
Sbjct: 541 VMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLMNAFGED 599

Query: 311 QRTDDVVRALNRLPELGITPD 331
           +R  +    L  + E  + PD
Sbjct: 600 RRVVEAFSVLQFMKENDLRPD 620



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 4/266 (1%)

Query: 80  VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 139
           + P +P  S L   S   RA   + A  L   A+        NA + LI   G AG    
Sbjct: 231 LEPDAPLFSDLI--SAFARAALPDAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAE 288

Query: 140 CLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
              ++ E    G +KP    YN LL    +       + +  EM+D G++P+  TY+ L+
Sbjct: 289 AEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLV 348

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
            AY RA   E    + +EM+  G++ S  +++ +LA   D G   +AF +  +M +S   
Sbjct: 349 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHAS-GV 407

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           QPD   ++ MI        +  A   FN M E G EP++    +LI  + K  R D  + 
Sbjct: 408 QPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAME 467

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQ 344
               + E    P       ++N++ +
Sbjct: 468 LFEEMRESNCPPGTTTYNIMINLLGE 493



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L++  R          ++ +I L G    + G   +  EMK  G+ PN+I
Sbjct: 458 KGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNII 517

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  GR+ R  +     + M  +GL P+   Y +L+ AY +    +  L+V + M
Sbjct: 518 TYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM 577

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G++ S  + N+L+    +     EAF + + MK + + +PD  T+++++       +
Sbjct: 578 RADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKEN-DLRPDVITYTTLMKALIRIEQ 636

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +   ++ EM+ +G  P+
Sbjct: 637 FDKVPVIYEEMITSGCAPD 655



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 119/262 (45%), Gaps = 13/262 (4%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 238
           + ++G  P+  +Y+ LL +    R   D   + R   +++E  ++    L++ L++  A 
Sbjct: 188 IREHGFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDLISAFAR 247

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 297
               D A ++    ++     P S   +++I+     G+V+EAEA+F E   AG  +P  
Sbjct: 248 AALPDAALDLLASAQAI-GLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRT 306

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 356
               +L++ Y K     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 307 RAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKE 366

Query: 357 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 413
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 367 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNC 426

Query: 414 LENAC----KLLELGLTLEVYT 431
           L +A     ++ E G+  +V T
Sbjct: 427 LGHAMDAFNRMREEGIEPDVVT 448


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 132/272 (48%), Gaps = 8/272 (2%)

Query: 67  HG--KTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWR 118
           HG  + G + KS   +        +L E SY +      + G ++ A  LY++   + ++
Sbjct: 413 HGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFK 472

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
            + + ++ LI  +  A  F   + VY +M      P  ITYN L+  + +A++  +    
Sbjct: 473 PNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRF 532

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM + G   + NTY SL+R   R +  +  L+++ ++ +KG+Q  V ++N L+     
Sbjct: 533 TREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCS 592

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEA ++  +MK   NC P+  T+++++      G   +A +++  +LE G  P++ 
Sbjct: 593 AGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDII 652

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              + I+      RT + V+ LN +   GI P
Sbjct: 653 SYNTRIKGLCSCNRTPEGVQLLNEMLASGIIP 684



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 1/213 (0%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           G F    +V+E M A   +P+MITY  ++  + R+        +Y EM   GL P+   Y
Sbjct: 279 GMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIY 338

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
            SLL+ +  A    +    +  M   G++ +VT YN +L    D G  D+A +++E ++ 
Sbjct: 339 NSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEK 397

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
            ++  PD  TFS+MI     +G  +++  +  E   +G E + F  +S+I    K  R D
Sbjct: 398 DDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLD 457

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           D V+   ++      P+      L+N   Q  K
Sbjct: 458 DAVKLYEKISMDSFKPNSHIYNALINGFCQASK 490



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 82/180 (45%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + PN+ TYN +L ++       +  T++  +   GL+P+  TY++L+  + +    ++ L
Sbjct: 155 IAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNAL 214

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            +  EM    +Q     YN LL  C   G  ++A  ++E +       P+  T++ M+  
Sbjct: 215 YLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDG 274

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G   EA  ++  M+    +P++    ++I    ++   D   R  + + + G+ PD
Sbjct: 275 LCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPD 334



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 3/207 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   FST+I      G  +  L + EE +  G + +  +Y++++  + +  R      +Y
Sbjct: 404 DMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLY 463

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 238
           ++++ +   PN + Y +L+  + +A    D + VY +M E     +   YNTL+  +C  
Sbjct: 464 EKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKA 523

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
             Y  EA     +M   + C  D  T+ S+I       K+  A A++N++L+ G + ++ 
Sbjct: 524 EKYL-EASRFTREML-EKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVV 581

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPE 325
           +   LI     A + D+  + L+ + E
Sbjct: 582 MHNILIHGLCSAGKVDEASQLLSEMKE 608



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/336 (19%), Positives = 130/336 (38%), Gaps = 73/336 (21%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  +++R      + D   + T+I     + + D    VY EM   G+ P+++
Sbjct: 277 KLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVV 336

Query: 158 TYNNLLDTM---GRAKRPWQV-----------KTIYKEM--------------------- 182
            YN+LL      GR    W+             T Y  M                     
Sbjct: 337 IYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLE 396

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGY 241
            D+ LSP+  T+++++       +   +L +  E +  G +L    Y+++++ +C D G 
Sbjct: 397 KDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKD-GR 455

Query: 242 TDEAFEIFEDMK----------------------------------SSENCQPDSWTFSS 267
            D+A +++E +                                   +  +C P + T+++
Sbjct: 456 LDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNT 515

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I       K  EA     EMLE G   ++    SLI+   + ++ D  +   N++ + G
Sbjct: 516 LIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKG 575

Query: 328 ITPDDRFCGCLLNVMTQTPK-EELGKLV-ECVEKSN 361
           +  D      L++ +    K +E  +L+ E  EK+N
Sbjct: 576 LQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNN 611


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/442 (21%), Positives = 194/442 (43%), Gaps = 30/442 (6%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++ D + +++++KLY   G+F     VY+ ++  G+KP+  TYN L+    R +RP +  
Sbjct: 950  FKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGL 1009

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++  EM   GL P  +TY SL+ A+G+ +  E    ++  +  K  +L  + Y+ ++ M 
Sbjct: 1010 SLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMF 1069

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             + G   +A ++   MK +   +P   T   ++   S  G+  EAE + + +   G   +
Sbjct: 1070 RNSGNHSKAEKLLGVMKEA-GVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLS 1128

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV--MTQTPKEELGKLV 354
                +S+I  Y K    +  ++ L  + + G+ PD R   C +    ++Q   E +  L+
Sbjct: 1129 TLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAI-VLL 1187

Query: 355  ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLL 414
            + +  +   L   ++LL E+ D          E    +  +    + N L DL     L 
Sbjct: 1188 KALRDTGFDLP--IRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFELR 1245

Query: 415  ENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA------ 467
              A  + +L +   +Y  D+   +   W    + +S G+AL  L +W++ +  +      
Sbjct: 1246 ATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQASFLITIF 1305

Query: 468  LESGEEF---------------PPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDS 512
            ++  EE+               P  + + TG    +Y+   L S  ++ L E+ +PF   
Sbjct: 1306 VQLMEEYFYFWQDASLQGYPLSPKSVVLITGTA--EYNMVSLNSTLKAFLWEMGSPFLPC 1363

Query: 513  PDKVGWFLTTEAAAKSWLESRS 534
              + G  +    + + WL+  S
Sbjct: 1364 KTRSGLLVAKAHSLRMWLKDSS 1385



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 1/241 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L +  R    + D   ++TLI       N +  + VY +M A   +P++ TYN ++
Sbjct: 309 LAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMI 368

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR     +   ++K++   G  P+  TY SLL A+ R    +    +  +M + G  
Sbjct: 369 SVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFG 428

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M    G  D AF+++ DMK S    PD+ T++ +I        + EA  
Sbjct: 429 KDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGR-SPDAVTYTVLIDSLGKANMIKEAAE 487

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           + +EML A  +P L   ++LI  Y KA +  +     + +   GI PD      +L+++ 
Sbjct: 488 VMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILL 547

Query: 344 Q 344
           +
Sbjct: 548 R 548



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 122/264 (46%), Gaps = 2/264 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R  N+E A  +Y+     + + D   ++ +I +YG  G       +++++++ G  P+ 
Sbjct: 337 SRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDA 396

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN+LL    R     +VK I ++M   G   +  TY +++  YG+    +    +Y +
Sbjct: 397 VTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSD 456

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G       Y  L+          EA E+  +M ++   +P   TFS++I   +  G
Sbjct: 457 MKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNA-XVKPTLRTFSALICGYAKAG 515

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  EAE  F+ ML +G +P+    + ++    +   +   ++    +      PD     
Sbjct: 516 KRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYE 575

Query: 337 CLLNVMTQTPKEE-LGKLVECVEK 359
            +L V+ +  +EE + K+V+ +E+
Sbjct: 576 VMLRVLGKENREEDVHKVVKDMEE 599



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 111/242 (45%), Gaps = 1/242 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G    A  L+    ++ +  D   +++L+  +   GN D    + E+M  +G   + +
Sbjct: 373 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 432

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++   G+  +      +Y +M  +G SP+  TY  L+ + G+A   ++   V  EM
Sbjct: 433 TYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEM 492

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
               ++ ++  ++ L+   A  G   EA E F+ M  S   +PD   +S M+ I     +
Sbjct: 493 LNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRS-GIKPDHLAYSVMLDILLRFNE 551

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             +A  ++ EM+   F+P+  +   +++  GK  R +DV + +  + EL        C  
Sbjct: 552 SGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSI 611

Query: 338 LL 339
           L+
Sbjct: 612 LV 613



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/212 (18%), Positives = 98/212 (46%), Gaps = 1/212 (0%)

Query: 119  IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
            +D   ++ LI  Y  +G ++    ++  M   G  P + + N L+  +    R  ++  +
Sbjct: 812  VDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVV 871

Query: 179  YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             +E+ D G   + ++   +L A+  A    +   +Y+ MK  G   ++ LY  ++ + A 
Sbjct: 872  IQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAK 931

Query: 239  VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                 +   +  +M+ +   +PD   ++S++ + +  G   +   ++  + EAG +P+  
Sbjct: 932  GKRVRDVEAMVSEMEVA-XFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDED 990

Query: 299  VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               +LI  Y + +R ++ +  ++ +  +G+ P
Sbjct: 991  TYNTLILMYCRDRRPEEGLSLMHEMRRVGLEP 1022



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 39/181 (21%)

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           SPN    A++L   G+A      + ++    E     +V +YN ++ + A  G   +  E
Sbjct: 217 SPNARMLATILSVLGKANQEALAVEIFAR-AEAAXGNTVQVYNAMMGVYARTGRFTKVQE 275

Query: 248 IFEDMKSSENC-------------------------------------QPDSWTFSSMIT 270
           +  D+  S  C                                     QPD  T++++I+
Sbjct: 276 LL-DLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLIS 334

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            CS    + EA  ++N+M+    +P+L+   ++I  YG+   + +  R    L   G  P
Sbjct: 335 ACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLP 394

Query: 331 D 331
           D
Sbjct: 395 D 395


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 124/276 (44%), Gaps = 34/276 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  + ++ + E+ +    AF  +I+ +  AG+    LN+ + M+  G  P ++
Sbjct: 526 KMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVM 585

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + +  +  +  ++  +M+  G++PN +TY  ++R Y            + ++
Sbjct: 586 TYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKI 645

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--------NCQPDSW------ 263
           KE G++L V +Y TLL  C   G    A  +  +M + +        N   D W      
Sbjct: 646 KEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDV 705

Query: 264 --------------------TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                               T++S I  C   G +  A+ +  EM + G +PNL   T+L
Sbjct: 706 WEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTL 765

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           I+ + KA   D  +++   +   G+ PD+    CL+
Sbjct: 766 IKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLV 801



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN++ A  L      +      +A+ +++  Y    +   CL V+E +K     P++I
Sbjct: 386 QSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSII 445

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L++   +  +  +   I KEM   G+  N  TY+ L+  +       +  S++ EM
Sbjct: 446 SYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEM 505

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+Q    +YN L+     +G  D A  I E M+  E  QP +  F  +I   +  G 
Sbjct: 506 LKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQ-KERMQPSNRAFRPIIEGFAVAGD 564

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A  + + M  +G  P +    +LI    K  + +  V  LN++   GITP++
Sbjct: 565 MKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNE 619



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 1/182 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G++  AF  + + +    ++D   + TL++    +G     L V  EM    +  N   Y
Sbjct: 633 GDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVY 692

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   R    W+   + K+M ++G+ PN +TY S + A  +A   +    V  EM +
Sbjct: 693 NILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMAD 752

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++ ++  Y TL+   A     D A + FE+MK +   +PD   +  ++T    R  V 
Sbjct: 753 VGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLA-GLKPDEAAYHCLVTSLLSRATVM 811

Query: 280 EA 281
           E 
Sbjct: 812 EG 813



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 121/278 (43%), Gaps = 44/278 (15%)

Query: 95  YDTRAGNVEMAFGLYD--RARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAI 150
           Y  + G+   A   ++  RAR     I+PNAF  ++L+  Y  A +  G L+  EEMKA 
Sbjct: 278 YYAKRGDKHHARATFENMRARG----IEPNAFVFTSLVHAYAVARDMRGVLSCVEEMKAE 333

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYK------------------------------ 180
           G++  ++TY+ ++    +         ++K                              
Sbjct: 334 GIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHCQSGNMDRA 393

Query: 181 -----EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
                EM ++G+    + Y S++  Y   +  +  L V+  +KE     S+  Y  L+ +
Sbjct: 394 EELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINL 453

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              +G   +A  I ++M+S    + ++ T+S +I+        + A ++F EML++G +P
Sbjct: 454 YIKIGKVTKAIAISKEMESY-GIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQP 512

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           +  +   LI+ + K    D  +R L ++ +  + P +R
Sbjct: 513 DRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNR 550



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 116/310 (37%), Gaps = 54/310 (17%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F  +I  Y   G+       +E M+A G++PN   + +L                     
Sbjct: 272 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL--------------------- 310

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
                         + AY  AR     LS   EMK +G++L++  Y+ ++A  A +    
Sbjct: 311 --------------VHAYAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQ 356

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A  +F++ K+      +   +S++I      G +  AE +  EM E G +  +    S+
Sbjct: 357 SADNLFKEAKAKLG-DLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSM 415

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 363
           +  Y   Q     +    RL E   TP     GCL+N+  +     +GK+ + +  S   
Sbjct: 416 MHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIK-----IGKVTKAIAISKEM 470

Query: 364 LGYVVKL-----------LLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 412
             Y +K             +   D    F      L + +  D  +A  N LI+    + 
Sbjct: 471 ESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPD--RAIYNLLIEAFCKMG 528

Query: 413 LLENACKLLE 422
            ++ A ++LE
Sbjct: 529 NMDRAIRILE 538



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 31/70 (44%)

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           +P    F  MI   + RG    A A F  M   G EPN FV TSL+  Y  A+    V+ 
Sbjct: 266 KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLS 325

Query: 319 ALNRLPELGI 328
            +  +   GI
Sbjct: 326 CVEEMKAEGI 335


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 115/214 (53%), Gaps = 5/214 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TI 178
           D  +F++ I     +G +   L + +EM A  +KP+ I+YN+ ++  G+  + W++   +
Sbjct: 389 DATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQ-WEMALEL 447

Query: 179 YKEMTDNGLSPNWNTYASLLRAYG-RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
            ++M   GL+PN  +    +RA G R R+ ++ L + R+M  +G+  +V  YN+ +  C 
Sbjct: 448 RRQMPTKGLTPNVISSNIAIRACGERGRW-QEGLELLRQMPAQGLTPNVITYNSAIKTCG 506

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  ++A ++   MK      PDS T++S I  CS RG+  EA A+  EM   G  P++
Sbjct: 507 KGGQWEKALDLLAKMKELA-MTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDV 565

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              T+ I  YGK  + +  V  L ++P  G+TP+
Sbjct: 566 ISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPN 599



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 4/236 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R G  E A  L  R   E+  + PN F  ++ I+  G+   ++  +++  EM    V P+
Sbjct: 156 RQGQWEKALELL-REIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPD 214

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            I+YN+ +   GR  +  +V  + +EM   GL+P+  TY S++   G+    ++ LSV  
Sbjct: 215 EISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLT 274

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM  KG+      YN  +  C   G   EA E+   M+ S+   PD  ++ + I  C   
Sbjct: 275 EMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQME-SQGVTPDVISYDAAIKACGGG 333

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G+   +  + +EM   G  PN     S I   GK  + +  V  L  +  LG+TPD
Sbjct: 334 GQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPD 389



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   +++ IK  G  G ++  L++  +MK + + P+ ITYN+ +    +  R  +  
Sbjct: 491 LTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAV 550

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM   GL+P+  +Y + + AYG+    E  + + R+M  KG+  +V  YN+++  C
Sbjct: 551 ALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKAC 610

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  ++A ++ +++K +    PD  +++  I+ C  RG+  EA  +  EM   G  P+
Sbjct: 611 GRGGEWEKALDLLKELKETA-VAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPD 669

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +   TS I+        +  +  LN +   G++P
Sbjct: 670 VISYTSAIRACNAEGEWEKALGLLNLMGAHGVSP 703



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 111/229 (48%), Gaps = 1/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E+A  L     + +   D  ++++ IK  G  G ++  + +  EM ++G+ P+ ITYN++
Sbjct: 197 EIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSV 256

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +   G+  +  +  ++  EM+  GL+P   +Y   +RA GR+   ++ + V R+M+ +G+
Sbjct: 257 ITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGV 316

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
              V  Y+  +  C   G  + + ++ ++M +     P++  F+S I  C   G+  +A 
Sbjct: 317 TPDVISYDAAIKACGGGGQWETSVDLLDEM-AGRGVAPNTIHFNSAIVACGKGGQWEKAV 375

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +  E+   G  P+     S I    K+ R  + +  L  +P   + PD
Sbjct: 376 ELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPD 424



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 1/232 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  E A  L  + +      D   +++ I      G +   + +  EM   G+ P++I
Sbjct: 507 KGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVI 566

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y   +D  G+  +  +   + ++M   GL+PN  TY S+++A GR    E  L + +E+
Sbjct: 567 SYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKEL 626

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE  +   +  YN  ++ C   G  +EA ++  +M  +E   PD  +++S I  C+  G+
Sbjct: 627 KETAVAPDLMSYNLAISACGKRGRWEEALDLLREMP-AEGLTPDVISYTSAIRACNAEGE 685

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
             +A  + N M   G  P     +  I+  GK  R ++ V  +  + + G++
Sbjct: 686 WEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGLS 737



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T++G  + A  L      ++ + D  ++++ I+  G  G ++  L +  +M   G+ PN+
Sbjct: 401 TKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNV 460

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I+ N  +   G   R  +   + ++M   GL+PN  TY S ++  G+    E  L +  +
Sbjct: 461 ISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAK 520

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MKE  M      YN+ +A C+  G   EA  +  +M   +   PD  ++++ I      G
Sbjct: 521 MKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMP-GQGLTPDVISYTAAIDAYGKNG 579

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   A  +  +M   G  PN+    S+I+  G+    +  +  L  L E  + PD
Sbjct: 580 QWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPD 634



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 102/212 (48%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++   IK  G  G ++  +++ +EM   GV PN I +N+ +   G+  +  +   + 
Sbjct: 319 DVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELL 378

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +E+T  GL+P+  ++ S + A  ++   ++ L + +EM  K ++     YN+ +  C   
Sbjct: 379 REVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKG 438

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  + A E+   M  ++   P+  + +  I  C  RG+  E   +  +M   G  PN+  
Sbjct: 439 GQWEMALELRRQMP-TKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVIT 497

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             S I+  GK  + +  +  L ++ EL +TPD
Sbjct: 498 YNSAIKTCGKGGQWEKALDLLAKMKELAMTPD 529



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G  EMA  L  +   +   + PN  S+   I+  G  G +   L +  +M A G+ PN
Sbjct: 437 KGGQWEMALELRRQMPTKG--LTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPN 494

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +ITYN+ + T G+  +  +   +  +M +  ++P+  TY S + A  +    ++ +++ R
Sbjct: 495 VITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLR 554

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM  +G+   V  Y   +      G  + A E+   M + +   P+  T++S+I  C   
Sbjct: 555 EMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPT-KGLTPNVITYNSVIKACGRG 613

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G+  +A  +  E+ E    P+L      I   GK  R ++ +  L  +P  G+TPD
Sbjct: 614 GEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPD 669



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           + L +  EMKE G+  + + Y T +  C   G  ++A E+  ++   E   P+ + ++S 
Sbjct: 128 EALGILDEMKEGGVVCAHS-YTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSA 186

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I  C    +   A ++  EM +    P+     S I+  G+  + + V+  L  +P +G+
Sbjct: 187 IEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGL 246

Query: 329 TPD 331
           TPD
Sbjct: 247 TPD 249



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 9/146 (6%)

Query: 194 YASLLRAYGRA------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           ++S +R + R+      + GE T  V  +   +    +       L   A  G   EA  
Sbjct: 72  HSSPMRRHARSCCRAAPKLGEATAVVTMQGAARANSRAARKLQAALREAATTGKWREALG 131

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQC 306
           I ++MK  E     + ++++ IT C  +G+  +A  +  E+ E  G  PN+F   S I+ 
Sbjct: 132 ILDEMK--EGGVVCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEA 189

Query: 307 YGKAQRTDDVVRALNRLPELGITPDD 332
            G   + +  V  L  + +  + PD+
Sbjct: 190 CGSGDQWEIAVSLLREMADREVVPDE 215


>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Brachypodium distachyon]
          Length = 534

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 11/223 (4%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TL+  +  +G  D    V+ EM+  G+ PN+ TY  ++D M RA +  + + +  +M 
Sbjct: 242 YTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMI 301

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT- 242
           D+G  PN  T+ +++RA+ +A   E  L V+ +M++ G    +  YN L+      G + 
Sbjct: 302 DSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSN 361

Query: 243 -DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D A ++   M  ++ C PD  TF+ M+ +    G V  A  ++  M E   +PN+    
Sbjct: 362 LDAAMKLLLKM-IAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITYN 420

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 336
            L++ +GK +  D V+R    +   G+ P+        + FCG
Sbjct: 421 LLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGALIETFCG 463



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 3/154 (1%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N++ A  L  +   +    D + F+ ++KL    GN D    +YE M+ +  KPN+ITYN
Sbjct: 361 NLDAAMKLLLKMIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITYN 420

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMKE 219
            L+   G+ K    V  I K+M   G+ PN NTY +L+  + GR  + +   +  REM E
Sbjct: 421 LLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGALIETFCGRGNW-KRAYATLREMLE 479

Query: 220 -KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            K ++    +Y+ +L +    G   +  E+ E M
Sbjct: 480 VKSLKPKKPVYDMVLVLLRKAGQLRKHEELVELM 513



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 87/199 (43%), Gaps = 2/199 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG--NFDGCLNVYEEMKAIGVKP 154
            +AG  E    ++++ R      D   ++ L++ +   G  N D  + +  +M A G  P
Sbjct: 320 VKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKLLLKMIAKGCTP 379

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  T+N +L  +           +Y+ M +    PN  TY  L++ +G+ +  +  L + 
Sbjct: 380 DCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITYNLLMKLFGKDKSMDMVLRIK 439

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           ++M  +G++ +V  Y  L+      G    A+    +M   ++ +P    +  ++ +   
Sbjct: 440 KDMDAQGVEPNVNTYGALIETFCGRGNWKRAYATLREMLEVKSLKPKKPVYDMVLVLLRK 499

Query: 275 RGKVSEAEAMFNEMLEAGF 293
            G++ + E +   M + GF
Sbjct: 500 AGQLRKHEELVELMADRGF 518



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y +++D + +       + +  EM    +  +     +L+R Y RA    +   ++R M+
Sbjct: 137 YASMMDLLAKHHHFPLARHLLDEMRKRSIPISSQVILALIRRYVRAGMSSEASDLFRSME 196

Query: 219 EKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           E G  +    +  +LL   +      EA  +F+  KS     PD   +++++      G 
Sbjct: 197 EYGGGVPDPAVLASLLGALSKKRLASEAQALFDSYKSVFT--PDVVLYTTLVHAWCRSGC 254

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +AE +F EM +AG  PN++  T++I    +A +       L ++ + G  P+
Sbjct: 255 LDKAEQVFAEMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPN 308


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 129/251 (51%), Gaps = 1/251 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +E A G          + D   FSTLI+L G   ++    +++ ++KA G+ P+ +
Sbjct: 72  RANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKV 131

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN++++  G+AK   + + +  EM + GL P+  +Y  L+ AY  ++   +   V+ EM
Sbjct: 132 IYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEM 191

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K KG+QL VT  N ++ +   +    +A E+F  M  +   Q +  T+++MI +      
Sbjct: 192 KTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAEL 251

Query: 278 VSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +SEA  +F  M  + G EPN+    +++  +G   + +  +R + ++ + GI P+     
Sbjct: 252 LSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYS 311

Query: 337 CLLNVMTQTPK 347
            L+++  +T K
Sbjct: 312 TLISIYGKTGK 322



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           ++T+IK+Y  A       NV+  M+   GV+PN+ITYN +L   G   +  +   + ++M
Sbjct: 239 YNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKM 298

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G+ PN  TY++L+  YG+    +    +++ ++EKG ++   LY +++ +    G  
Sbjct: 299 QQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLV 358

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A  + E++K     QPD     + I+I +   K+ EA  ++    EAG         S
Sbjct: 359 AHAKRLLEELK-----QPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKS 413

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           +IQ + + +R+ + +     + E G  PD      LL    Q  + E
Sbjct: 414 MIQLFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLE 460



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 3/192 (1%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           G  P++  YN +L  + RA R W++ + +  EM +  L P+  T+++L+  YGRA   ED
Sbjct: 20  GYAPSIFAYNVVLKNVLRA-RQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLED 78

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            +   +EM+  G++  + +++TL+ +   V    +A  +F  +K+S    PD   ++SMI
Sbjct: 79  AMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKAS-GIAPDKVIYNSMI 137

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            +        EA+ +  EM EAG  P+    T LI  Y ++Q+  +  +    +   GI 
Sbjct: 138 NLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQ 197

Query: 330 PDDRFCGCLLNV 341
            D   C  +++V
Sbjct: 198 LDVTTCNMMIDV 209



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 39/261 (14%)

Query: 65  YPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWR 118
           + HG T    K+   V     R  +    +Y T      + G  + A  L+   R + + 
Sbjct: 280 FLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFE 339

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----------------------- 155
           +D   + ++I +Y  AG       + EE+K   + P                        
Sbjct: 340 MDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTAISILAKAEKLEEAAKLYWRS 399

Query: 156 --------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
                    +TY +++    R KR      +++ M ++G  P+  T   LL AYG+ R  
Sbjct: 400 HEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQL 459

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           ED   +Y +M+E+G  L   ++  +L +  D     EA ++F  +K  E    D   + +
Sbjct: 460 EDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAEDMFAALK-LEGLDGDE-LYLT 517

Query: 268 MITICSCRGKVSEAEAMFNEM 288
           MI I     K++EA  +F+EM
Sbjct: 518 MIRIYERASKLNEASRLFSEM 538



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 1/170 (0%)

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           EM    + P+  T++ L+   GRA R        +EM   G+ P+   +++L+   G+ +
Sbjct: 50  EMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVK 109

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
                 S++ ++K  G+     +YN+++ +     +  EA  +  +MK +    PD+ ++
Sbjct: 110 DYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEA-GLMPDTVSY 168

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           + +I   +   K  EA+ +F EM   G + ++     +I  YGK +   D
Sbjct: 169 TILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRD 218



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PNA  +STLI +YG  G +D    +++ ++  G + + I Y +++    RA      K
Sbjct: 303 IEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAK 362

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAM 235
            + +E+    + P  +T  S+L    +A   E+   +Y    E G ++ SVT Y +++ +
Sbjct: 363 RLLEELKQPDIVPR-DTAISIL---AKAEKLEEAAKLYWRSHEAGEIKESVT-YKSMIQL 417

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
                 +  A ++FE+M+ S    PDS T   ++       ++ +AE ++ +M E G   
Sbjct: 418 FVRNKRSKNAIDVFENMRES-GFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTL 476

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
              V   +++ YG A++  +       L   G+  D+ +   +
Sbjct: 477 EKEVHFQMLKLYGDARKIREAEDMFAALKLEGLDGDELYLTMI 519


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 129/251 (51%), Gaps = 1/251 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +E A G          + D   FSTLI+L G   ++    +++ ++KA G+ P+ +
Sbjct: 72  RANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKV 131

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN++++  G+AK   + + +  EM + GL P+  +Y  L+ AY  ++   +   V+ EM
Sbjct: 132 IYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEM 191

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K KG+QL VT  N ++ +   +    +A E+F  M  +   Q +  T+++MI +      
Sbjct: 192 KTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAEL 251

Query: 278 VSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +SEA  +F  M  + G EPN+    +++  +G   + +  +R + ++ + GI P+     
Sbjct: 252 LSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYS 311

Query: 337 CLLNVMTQTPK 347
            L+++  +T K
Sbjct: 312 TLISIYGKTGK 322



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           ++T+IK+Y  A       NV+  M+   GV+PN+ITYN +L   G   +  +   + ++M
Sbjct: 239 YNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKM 298

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G+ PN  TY++L+  YG+    +    +++ ++EKG ++   LY +++ +    G  
Sbjct: 299 QQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLV 358

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A  + E++K     QPD     + I+I +   K+ EA  ++    EAG         S
Sbjct: 359 AHAKRLLEELK-----QPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKS 413

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           +IQ + + +R+ + +     + E G  PD      LL    Q  + E
Sbjct: 414 MIQLFMRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLE 460



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 3/192 (1%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           G  P++  YN +L  + RA R W++ + +  EM +  L P+  T+++L+  YGRA   ED
Sbjct: 20  GYAPSIFAYNVVLKNVLRA-RQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLED 78

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            +   +EM+  G++  + +++TL+ +   V    +A  +F  +K+S    PD   ++SMI
Sbjct: 79  AMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKAS-GIAPDKVIYNSMI 137

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            +        EA+ +  EM EAG  P+    T LI  Y ++Q+  +  +    +   GI 
Sbjct: 138 NLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQ 197

Query: 330 PDDRFCGCLLNV 341
            D   C  +++V
Sbjct: 198 LDVTTCNMMIDV 209



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 39/261 (14%)

Query: 65  YPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWR 118
           + HG T    K+   V     R  +    +Y T      + G  + A  L+   R + + 
Sbjct: 280 FLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFE 339

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----------------------- 155
           +D   + ++I +Y  AG       + EE+K   + P                        
Sbjct: 340 MDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTAISILAKAEKLEEAAKLYWRS 399

Query: 156 --------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
                    +TY +++    R KR      +++ M ++G  P+  T   LL AYG+ R  
Sbjct: 400 HEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQL 459

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           ED   +Y +M+E+G  L   ++  +L +  D     EA ++F  +K  E    D   + +
Sbjct: 460 EDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAEDMFAALK-LEGLDGDE-LYLT 517

Query: 268 MITICSCRGKVSEAEAMFNEM 288
           MI I     K++EA  +F+EM
Sbjct: 518 MIRIYERASKLNEASRLFSEM 538



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 1/170 (0%)

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           EM    + P+  T++ L+   GRA R        +EM   G+ P+   +++L+   G+ +
Sbjct: 50  EMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVK 109

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
                 S++ ++K  G+     +YN+++ +     +  EA  +  +MK +    PD+ ++
Sbjct: 110 DYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEA-GLMPDTVSY 168

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           + +I   +   K  EA+ +F EM   G + ++     +I  YGK +   D
Sbjct: 169 TILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRD 218



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PNA  +STLI +YG  G +D    +++ ++  G + + I Y +++    RA      K
Sbjct: 303 IEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAK 362

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAM 235
            + +E+    + P  +T  S+L    +A   E+   +Y    E G ++ SVT Y +++ +
Sbjct: 363 RLLEELKQPDIVPR-DTAISIL---AKAEKLEEAAKLYWRSHEAGEIKESVT-YKSMIQL 417

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
                 +  A ++FE+M+ S    PDS T   ++       ++ +AE ++ +M E G   
Sbjct: 418 FMRNKRSKNAIDVFENMRES-GFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTL 476

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
              V   +++ YG A++  +       L   G+  D+ +   +
Sbjct: 477 EKEVHFQMLKLYGDARKIREAEDMFAALKLEGLDGDELYLTMI 519


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 118/232 (50%), Gaps = 4/232 (1%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           ++   F  +++ Y  A   D  +  +  M+  GV PN+  +N+LL  + ++K   + + I
Sbjct: 134 VNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEI 193

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +++M  NG  SP+  TY+ LL  +GRA        VY +M + G Q  +  Y  ++    
Sbjct: 194 FEQM--NGRFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLC 251

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  +EA  + +DM +S  CQP ++ +S ++       ++ +A A F +M + G  P++
Sbjct: 252 KTGRVEEAVFVVQDM-TSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDV 310

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            V  +L+  + K ++ D+  R ++ +   GITP+ R    +LN +    K++
Sbjct: 311 VVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDD 362



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 109/217 (50%), Gaps = 3/217 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++ NV  A  ++++  N ++  D   +S L++ +G A N      VY +M   G +P+++
Sbjct: 183 KSKNVRKAQEIFEQM-NGRFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIV 241

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D++ +  R  +   + ++MT  G  P    Y+ L+  YG     ED ++ + +M
Sbjct: 242 TYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDM 301

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G+   V +YN L+     V   D AF + +DM+      P+S T++ ++      GK
Sbjct: 302 QKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDME-GHGITPNSRTWNIILNKLISLGK 360

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             EA  +F  M++   +P+    T +I+ + +  R +
Sbjct: 361 DDEAYRVFRRMIKRC-QPDSDTYTMMIKMFCENDRLE 396


>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
 gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
          Length = 602

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 124/239 (51%), Gaps = 7/239 (2%)

Query: 105 AFGLYDRARNEK---WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           A  +++   NEK   ++ D   F  +I +Y  AG++     ++ +M    +  + +T+N+
Sbjct: 229 AEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERKIPLSTVTFNS 288

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+      K   +V +IY +M   G+ P+  +Y+ L++AYG+AR  E+ L+V+ EM + G
Sbjct: 289 LMSFETDYK---EVSSIYDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAG 345

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +   YN LL   A  G  DEA  +F+ M+     +PD  ++++M+        ++ A
Sbjct: 346 VRPTRKSYNILLDAFAISGLVDEANTVFKAMR-RHRVEPDLCSYTTMVLAYVNASDMNGA 404

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           E  F  + + G +PN+ V  +L++ Y K    + V+R   R+   G+ P+      +++
Sbjct: 405 EKFFRRIKDDGLKPNVVVYGTLMKGYSKLNNVEKVMRVYERMRIQGVEPNQTIYTTIMD 463



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    + D  ++S LIK YG A   +  L V+EEM   GV+P   +YN LLD   
Sbjct: 302 IYDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFA 361

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            +    +  T++K M  + + P+  +Y +++ AY  A         +R +K+ G++ +V 
Sbjct: 362 ISGLVDEANTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVV 421

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +Y TL+   + +   ++   ++E M+  +  +P+   +++++           A   F E
Sbjct: 422 VYGTLMKGYSKLNNVEKVMRVYERMR-IQGVEPNQTIYTTIMDAHGRNSDFGNAVIWFKE 480

Query: 288 MLEAGFEPNLF---VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           M   G+ P+     +L SL     + Q  +++V   N   +L + PD+
Sbjct: 481 MEARGYPPDQKAKNILLSLANTPEEQQEANELVG--NGAIQLEVKPDN 526



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  L+  YG  G+F     V + M   G +P++I+   L++  GR K+  + +
Sbjct: 136 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAE 195

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVTLYNTLL 233
            +++ M  +G  P+  TY  +L++       ++  +++ ++   K    +    +++ ++
Sbjct: 196 AVFRRMQTSGPEPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMI 255

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            M    G   +A ++F  M  SE   P  + TF+S+++  +   +VS   +++++M  AG
Sbjct: 256 YMYKKAGDYAQARKLFAQM--SERKIPLSTVTFNSLMSFETDYKEVS---SIYDQMQRAG 310

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            +P++   + LI+ YGKA+R ++ +     + + G+ P  +    LL+
Sbjct: 311 MKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLD 358



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 7/163 (4%)

Query: 107 GLYDRARN-----EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL D A        + R++P+  +++T++  Y  A + +G    +  +K  G+KPN++ Y
Sbjct: 364 GLVDEANTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVVVY 423

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+    +     +V  +Y+ M   G+ PN   Y +++ A+GR     + +  ++EM+ 
Sbjct: 424 GTLMKGYSKLNNVEKVMRVYERMRIQGVEPNQTIYTTIMDAHGRNSDFGNAVIWFKEMEA 483

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +G        N LL++        EA E+  +       +PD+
Sbjct: 484 RGYPPDQKAKNILLSLANTPEEQQEANELVGNGAIQLEVKPDN 526


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 120/235 (51%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  ++D    E    D  +++TL+  Y   G     L+V+ EM   G+ P+++
Sbjct: 239 KAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVV 298

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+  M +A    +   + +EM + GL  N  T+ +L+  + +  + +D L   REM
Sbjct: 299 TFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREM 358

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++  +Q SV  YN L+     VG  DEA E+  +M+ ++  +PD  T+S++++     G 
Sbjct: 359 RQCRIQPSVVCYNALINGYCMVGRMDEARELVREME-AKGVKPDVVTYSTILSAYCKNGD 417

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              A  +  +MLE G  P+    +SLI+   + +R  D       +  LG+ PD+
Sbjct: 418 THSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDE 472



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 3/214 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN ++   L++     G+    L+V  +M+  G  PN +TYN L+    RA    + +
Sbjct: 153 VAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAE 212

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +   M + GL PN  T+ S++    +A   ED   V+ EM ++G+      YNTL+   
Sbjct: 213 RLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGY 272

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             VG + EA  +F +M + +   PD  TF+S+I +    G +  A  +  EM E G + N
Sbjct: 273 CKVGCSHEALSVFAEM-TRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMN 331

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               T+LI  + K    DD + A+  + +  I P
Sbjct: 332 EITFTALIDGFCKKGFLDDALLAVREMRQCRIQP 365



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 108/214 (50%), Gaps = 3/214 (1%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DPNA  ++TL+  +  AG  D    + + M+  G+KPN++T+N++++ + +A R    + 
Sbjct: 189 DPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARK 248

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++ EM   GL+P+  +Y +L+  Y +     + LSV+ EM  KG+   V  + +L+ +  
Sbjct: 249 VFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMC 308

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  + A  +  +M+     Q +  TF+++I     +G + +A     EM +   +P++
Sbjct: 309 KAGNLERAVGLVREMR-ERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSV 367

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               +LI  Y    R D+    +  +   G+ PD
Sbjct: 368 VCYNALINGYCMVGRMDEARELVREMEAKGVKPD 401



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 113/234 (48%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V+ A  L D  R    + +   F++++     AG  +    V++EM   G+ P+ +
Sbjct: 204 RAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGV 263

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN L+    +     +  +++ EMT  G+ P+  T+ SL+    +A   E  + + REM
Sbjct: 264 SYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREM 323

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G+Q++   +  L+      G+ D+A     +M+     QP    ++++I      G+
Sbjct: 324 RERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCR-IQPSVVCYNALINGYCMVGR 382

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + EA  +  EM   G +P++   ++++  Y K   T    +   ++ E G+ PD
Sbjct: 383 MDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPD 436



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 104/230 (45%), Gaps = 22/230 (9%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +ST++  Y   G+      + ++M   GV P+ ITY++L+  +   KR      ++
Sbjct: 401 DVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLF 460

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           K M   GL P+  TY SL+  + +    E  LS++ EM + G+   V  Y+ L+   +  
Sbjct: 461 KNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKS 520

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC---------------SCRGKVSEAEAM 284
             T EA  +   +   E   P +  + +++  C                 +G ++EA+ +
Sbjct: 521 ARTKEAQRLLFKLYHEEPV-PANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKV 579

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN---RLPELGITPD 331
           +  +L+  +  +  V + LI  +    R  +V++AL+   ++ + G  P+
Sbjct: 580 YQSILDRNWNLDGSVYSVLIHGHC---REGNVMKALSFHKQMLQCGFAPN 626



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 96/229 (41%), Gaps = 16/229 (6%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +++LI  +   GN +  L++++EM   GV P+++TY+ L++ + ++ R  + + + 
Sbjct: 471 DEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLL 530

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGE---------------DTLSVYREMKEKGMQL 224
            ++      P    Y +L+R    A                   +   VY+ + ++   L
Sbjct: 531 FKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNL 590

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
             ++Y+ L+      G   +A    + M       P+S +  S+I     +G V EA+ +
Sbjct: 591 DGSVYSVLIHGHCREGNVMKALSFHKQMLQC-GFAPNSTSTISLIRGLFEKGMVVEADQV 649

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             ++L      +     +LI    K    D V+  L+ +   G+ P  R
Sbjct: 650 IQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLPSPR 698


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic; AltName: Full=Protein PROTON GRADIENT
            REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 1/236 (0%)

Query: 97   TRAGNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
             +AGNV+ A  LY D   +  +      +  LI     +G       ++E M   G +PN
Sbjct: 866  VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPN 925

Query: 156  MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
               YN L++  G+A        ++K M   G+ P+  TY+ L+         ++ L  ++
Sbjct: 926  CAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFK 985

Query: 216  EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            E+KE G+   V  YN ++         +EA  +F +MK+S    PD +T++S+I      
Sbjct: 986  ELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045

Query: 276  GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G V EA  ++NE+  AG EPN+F   +LI+ Y  + + +        +   G +P+
Sbjct: 1046 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + P A++    I  YG +G+    L  +E+MK  G+ PN++  N  L ++ +A R 
Sbjct: 425 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRD 484

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + K I+  + D GL P+  TY  +++ Y +    ++ + +  EM E G +  V + N+L
Sbjct: 485 REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSL 544

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +         DEA+++F  MK  +  +P   T+++++      GK+ EA  +F  M++ G
Sbjct: 545 INTLYKADRVDEAWKMFMRMKEMK-LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             PN     +L  C  K       ++ L ++ ++G  PD
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 106/217 (48%), Gaps = 1/217 (0%)

Query: 136 NFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           N  G   ++E+  K +GV+P + TYN L+  +  A      + ++ ++   G  P+  TY
Sbjct: 764 NVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATY 823

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
             LL AYG++   ++   +Y+EM     + +   +N +++     G  D+A +++ D+ S
Sbjct: 824 NFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMS 883

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             +  P + T+  +I   S  G++ EA+ +F  ML+ G  PN  +   LI  +GKA   D
Sbjct: 884 DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEAD 943

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
                  R+ + G+ PD +    L++ +    + + G
Sbjct: 944 AACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG 980



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 7/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG +  A+ +  R  +E    D   ++ LI    TA   D    V+E+MK    KP+ +
Sbjct: 270 RAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRV 329

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGE--DTLSVY 214
           TY  LLD     +    VK  + EM  +G  P+  T+  L+ A  +A  +GE  DTL V 
Sbjct: 330 TYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDV- 388

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             M+++G+  ++  YNTL+     V   D+A E+F +M+S    +P ++T+   I     
Sbjct: 389 --MRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESL-GVKPTAYTYIVFIDYYGK 445

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G    A   F +M   G  PN+    + +    KA R  +  +    L ++G+ PD
Sbjct: 446 SGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 109/230 (47%), Gaps = 4/230 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EMA+ ++D  +    + D N + T+ K     G          +M+  G   N  +YN L
Sbjct: 136 EMAY-VFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGL 194

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  + +++   +   +Y+ M   G  P+  TY+SL+   G+ R  +  + + +EM+  G+
Sbjct: 195 IHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGL 254

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEA 281
           + +V  +   + +    G  +EA+EI + M   E C PD  T++ +I  +C+ R K+  A
Sbjct: 255 KPNVYTFTICIRVLGRAGKINEAYEILKRM-DDEGCGPDVVTYTVLIDALCTAR-KLDCA 312

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +F +M     +P+     +L+  +   +  D V +  + + + G  PD
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPD 362



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 3/242 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PN   F+  I++ G AG  +    + + M   G  P+++TY  L+D +  A++ 
Sbjct: 250 ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKL 309

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
              K ++++M      P+  TY +LL  +   R  +     + EM++ G    V  +  L
Sbjct: 310 DCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTIL 369

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G   EAF+  + M+  +   P+  T++++I       ++ +A  +F  M   G
Sbjct: 370 VDALCKAGNFGEAFDTLDVMR-DQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLG 428

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
            +P  +     I  YGK+  +   +    ++   GI P+   C   L  + +  ++   K
Sbjct: 429 VKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAK 488

Query: 353 LV 354
            +
Sbjct: 489 QI 490



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 1/174 (0%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N +L+ +    +  ++  ++  M    +  + NTY ++ ++       +      R+M
Sbjct: 120 TCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKM 179

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G  L+   YN L+ +     +  EA E++  M   E  +P   T+SS++     R  
Sbjct: 180 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRM-ILEGFRPSLQTYSSLMVGLGKRRD 238

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +     +  EM   G +PN++  T  I+  G+A + ++    L R+ + G  PD
Sbjct: 239 IDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPD 292



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 99   AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMI 157
             G V+     +   +      D   ++ +I   G +   +  L ++ EMK + G+ P++ 
Sbjct: 974  VGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLY 1033

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            TYN+L+  +G A    +   IY E+   GL PN  T+ +L+R Y  +   E   +VY+ M
Sbjct: 1034 TYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1093

Query: 218  KEKGMQLSVTLYNTL 232
               G   +   Y  L
Sbjct: 1094 VTGGFSPNTGTYEQL 1108



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 8/185 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G ++ A  L           D    ++LI     A   D    ++  MK + +KP +
Sbjct: 514 SKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTV 573

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL  +G+  +  +   +++ M   G  PN  T+ +L     +       L +  +
Sbjct: 574 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFK 633

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G    V  YNT++      G   EA   F  MK           +   +T+C+   
Sbjct: 634 MMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK--------KLVYPDFVTLCTLLP 685

Query: 277 KVSEA 281
            V +A
Sbjct: 686 GVVKA 690


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 1/227 (0%)

Query: 105  AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
            A  LY +  +E +   P  +  L+      G  +   ++++EM   G KPN   YN LL+
Sbjct: 865  AMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLN 924

Query: 165  TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                A    +V  +++ M D G++P+  +Y  L+ A   A    D+LS +R++ E G++ 
Sbjct: 925  GYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEP 984

Query: 225  SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
             +  YN L+      G  +EA  +F DM+ S    P+ +T++S+I      GK +EA  M
Sbjct: 985  DLITYNLLIHGLGRSGRLEEAVSLFNDMEKS-GIAPNLYTYNSLILYLGKEGKAAEAGKM 1043

Query: 285  FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + E+L+ G++PN+F   +LI  Y  +  TD+   +  ++   G  P+
Sbjct: 1044 YEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPN 1090



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 1/210 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A++ ++      G  D   +V+++MK  G++P   +YN+L+    +A R      ++  M
Sbjct: 358 AYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHM 417

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             +G +PN  TY   +  YG++      +  Y  MK KG+   V   N +L   A  G  
Sbjct: 418 NIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRL 477

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A  +F ++KS   C PD+ T++ MI  CS      EA  +F+EM+E    P++  + S
Sbjct: 478 GMAKRVFHELKSIGVC-PDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNS 536

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           LI    KA R ++  +  + L E+ + P D
Sbjct: 537 LIDTLYKAGRGNEAWKIFHELKEMNLDPTD 566



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 115/232 (49%), Gaps = 5/232 (2%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
            +++A GL+   +  +   DP+ F+   ++   G +   +  L V +EM   G +   +TY
Sbjct: 792  IDVAEGLFSEMK--RLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTY 849

Query: 160  NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            N ++  + ++K  ++   +Y ++   G SP   TY  LL    +    ED   ++ EM +
Sbjct: 850  NTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLD 909

Query: 220  KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             G + +  +YN LL      G T++  E+F++M   +   PD  +++ +I      G+++
Sbjct: 910  YGCKPNRAIYNILLNGYRLAGNTEKVCELFQNM-VDQGINPDIKSYTVLIGALCTAGRLN 968

Query: 280  EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ + F ++ E G EP+L     LI   G++ R ++ V   N + + GI P+
Sbjct: 969  DSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPN 1020



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PN +S    I++ G AG F+    + ++M+  G KP+++T   L+  +  A R 
Sbjct: 243 EDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRV 302

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
              K ++ +M  +   P+  TY +LL   G        + ++  MK  G   +V  Y  +
Sbjct: 303 SDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAV 362

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +     VG  DEA ++F+ MK  +  +P  ++++S+I+      +++ A  +FN M   G
Sbjct: 363 VDALCQVGRVDEASDVFDQMK-QKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHG 421

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             PN +     I  YGK+  +   ++    +   GI PD
Sbjct: 422 PTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPD 460



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 89/170 (52%), Gaps = 1/170 (0%)

Query: 99   AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            AGN E    L+    ++    D  +++ LI    TAG  +  L+ + ++  +G++P++IT
Sbjct: 929  AGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLIT 988

Query: 159  YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            YN L+  +GR+ R  +  +++ +M  +G++PN  TY SL+   G+     +   +Y E+ 
Sbjct: 989  YNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELL 1048

Query: 219  EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            + G + +V  YN L+   +  G TD AF  +  M     C P+S T+  +
Sbjct: 1049 KNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVG-GCPPNSSTYMQL 1097



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 108/224 (48%), Gaps = 2/224 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V     ++D  + +  + +   F T+ +  G  G           MK  G+  N  TY
Sbjct: 126 GRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTY 185

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+  + ++    +   +YK M  +G+ P+  TY+ L+ A+G+ R  E  + + REM++
Sbjct: 186 NGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGK-RDVETVVWLLREMED 244

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++ +V  Y   + +    G  +EA++I + M+  E C+PD  T + +I I    G+VS
Sbjct: 245 HGVKPNVYSYTICIRVLGQAGRFEEAYKILQKME-DEGCKPDVVTNTVLIQILCDAGRVS 303

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           +A+ +F +M  +  +P+     +L+   G    +  V+   N +
Sbjct: 304 DAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAM 347



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 10/231 (4%)

Query: 109 YDRARNEKWRI--------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           YDR   E +++            +S L+  +G   + +  + +  EM+  GVKPN+ +Y 
Sbjct: 197 YDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKR-DVETVVWLLREMEDHGVKPNVYSYT 255

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
             +  +G+A R  +   I ++M D G  P+  T   L++    A    D   V+ +MK  
Sbjct: 256 ICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKAS 315

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
             +     Y TLL  C D G +    EI+  MK ++    +   +++++      G+V E
Sbjct: 316 DQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMK-ADGYNDNVVAYTAVVDALCQVGRVDE 374

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A  +F++M + G EP  +   SLI  + KA R +  +   N +   G TP+
Sbjct: 375 ASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPN 425



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 104/199 (52%), Gaps = 1/199 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G +E A  L+D   +   + +   ++ L+  Y  AGN +    +++ M   G+ P++ 
Sbjct: 893  KDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIK 952

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +Y  L+  +  A R     + ++++T+ GL P+  TY  L+   GR+   E+ +S++ +M
Sbjct: 953  SYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDM 1012

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++ G+  ++  YN+L+      G   EA +++E++  +   +P+ +T++++I   S  G 
Sbjct: 1013 EKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKN-GWKPNVFTYNALIGGYSVSGS 1071

Query: 278  VSEAEAMFNEMLEAGFEPN 296
               A A + +M+  G  PN
Sbjct: 1072 TDNAFASYGQMIVGGCPPN 1090



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  E A+ +  +  +E  + D    + LI++   AG      +V+ +MKA   KP+ +
Sbjct: 263 QAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRV 322

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD  G       V  I+  M  +G + N   Y +++ A  +    ++   V+ +M
Sbjct: 323 TYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQM 382

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+KG++     YN+L++        + A E+F  M +     P+ +T+   I      G+
Sbjct: 383 KQKGIEPQQYSYNSLISGFLKADRLNHALELFNHM-NIHGPTPNGYTYVLFINYYGKSGE 441

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             +A   +  M   G  P++    +++    K+ R     R  + L  +G+ PD+
Sbjct: 442 SLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDN 496



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 4/239 (1%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           +Y  ++G    A   Y+  +++    D  A + ++     +G       V+ E+K+IGV 
Sbjct: 434 NYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVC 493

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ ITY  ++    +A    +   ++ EM +    P+     SL+    +A  G +   +
Sbjct: 494 PDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKI 553

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + E+KE  +  +   YNTLLA     G   E   + E+M S  N  P +    + +  C 
Sbjct: 554 FHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNS--NSYPPNLITYNTVLDCL 611

Query: 274 CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           C+ G+V+ A  M   M   G  P+L    + +    K  R  +  R   ++ ++ + PD
Sbjct: 612 CKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKV-LAPD 669


>gi|302769928|ref|XP_002968383.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
 gi|300164027|gb|EFJ30637.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
          Length = 532

 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 19/253 (7%)

Query: 96  DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +  AGN++    LY + +      D   ++ + K    + N    L +YEE+KA  +K N
Sbjct: 255 NAHAGNIQHVLRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKEIKLN 314

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +++Y  L+   G AK   +V  + ++M   G+ PN  T+ SL+ A  +    E TL VY+
Sbjct: 315 VLSYGTLIQIFGEAKMLDRVFQMKRDMDSTGIVPNVVTWTSLVGACSKGALVEKTLQVYQ 374

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----------------SENC 258
           +M + G   +   YN LL+ C D G +D+A ++F + K+                 SE  
Sbjct: 375 DMVQAGCTPNAFTYNFLLSACVDGGQSDKAHKLFREWKTSGRILAGIEVQDESVIFSEWV 434

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           +PDS  +++M+  C    K  +AEA+  EM+ +G  P+      LI  YG        V+
Sbjct: 435 RPDSVAYNTMMRACDKLPK--QAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQGAVQ 492

Query: 319 ALNRLPELGITPD 331
           A  R+ + GI  D
Sbjct: 493 AFQRMGKSGIIAD 505



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 34/203 (16%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR-------------------------- 168
           G+      V++ +++ GV P+M +Y  L+D  GR                          
Sbjct: 191 GDLQSVFQVFQALESTGVLPDMYSYCILIDACGRCGDTEKATAIFEGLLKAGTVLNVYVC 250

Query: 169 -------AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
                  A     V  +Y++M  +G++ +  TY  + +A   ++     L +Y E+K K 
Sbjct: 251 NSMMNAHAGNIQHVLRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKE 310

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++L+V  Y TL+ +  +    D  F++  DM S+    P+  T++S++  CS    V + 
Sbjct: 311 IKLNVLSYGTLIQIFGEAKMLDRVFQMKRDMDST-GIVPNVVTWTSLVGACSKGALVEKT 369

Query: 282 EAMFNEMLEAGFEPNLFVLTSLI 304
             ++ +M++AG  PN F    L+
Sbjct: 370 LQVYQDMVQAGCTPNAFTYNFLL 392



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 152 VKPNMITYNNLLDTMGRA--KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           V+P+ + YN    TM RA  K P Q + + +EM  +GL P+  ++  L+ +YG     + 
Sbjct: 434 VRPDSVAYN----TMMRACDKLPKQAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQG 489

Query: 210 TLSVYREMKEKGMQLSVTLYNTLL 233
            +  ++ M + G+   V  Y  ++
Sbjct: 490 AVQAFQRMGKSGIIADVVAYTAII 513



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N ++    D G     F++F+ ++S+    PD +++  +I  C   G   +A A+F  +L
Sbjct: 181 NMIMQKFRDQGDLQSVFQVFQALEST-GVLPDMYSYCILIDACGRCGDTEKATAIFEGLL 239

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +AG   N++V  S++  +  A     V+R   ++   GI  D
Sbjct: 240 KAGTVLNVYVCNSMMNAH--AGNIQHVLRLYRQMQGSGIAAD 279


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 129/266 (48%), Gaps = 5/266 (1%)

Query: 80  VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 139
           + P++ RA     K Y  R G+++ A  + D         D   +S L+  Y  AG ++ 
Sbjct: 295 IKPRT-RAYNALLKGY-VRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWES 352

Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLL 198
              + +EM+A GVKP+   ++ +L    R +  WQ    + +EM  +G+ P+ + Y  ++
Sbjct: 353 ARILLKEMEADGVKPSSYVFSRILAGF-RDRGDWQKAFAVLREMQASGVRPDRHFYNVMI 411

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             +G+       +  +  M+E+ ++  V  +NTL+      G  D A E+FE+M+ S NC
Sbjct: 412 DTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRES-NC 470

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            P + T++ MI +   + +    EAM +EM E G  PN+   T+L+  YG++ R  + + 
Sbjct: 471 PPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAID 530

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQ 344
            +  +   G+ P       L+N   Q
Sbjct: 531 CIEAMKADGLKPSPTMYHALVNAYAQ 556



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A   +DR R E+   D   ++TLI  +   G  D  + ++EEM+     P   TYN +++
Sbjct: 423 AMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMIN 482

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G  +R   V+ +  EM + GL PN  TY +L+  YGR+   ++ +     MK  G++ 
Sbjct: 483 LLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP 542

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y+ L+   A  G  D A  + + MK ++  +      +S+I       +V EA ++
Sbjct: 543 SPTMYHALVNAYAQRGLADHALNVVKAMK-ADGLEVSILVLNSLINAFGEDRRVVEAFSV 601

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              M E G  P++   T+L++   + ++ D V      +   G  PD
Sbjct: 602 LQFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPD 648



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 120/261 (45%), Gaps = 11/261 (4%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G  P SY++        S++     D   G+ + AF +    +    R D + ++ +I  
Sbjct: 364 GVKPSSYVF--------SRILAGFRDR--GDWQKAFAVLREMQASGVRPDRHFYNVMIDT 413

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +G        ++ ++ M+   ++P+++T+N L+D   +  R  +   +++EM ++   P 
Sbjct: 414 FGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPG 473

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY  ++   G     E   ++  EMKE+G+  ++  Y TL+ +    G   EA +  E
Sbjct: 474 TTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIE 533

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            MK ++  +P    + +++   + RG    A  +   M   G E ++ VL SLI  +G+ 
Sbjct: 534 AMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGED 592

Query: 311 QRTDDVVRALNRLPELGITPD 331
           +R  +    L  + E G+ PD
Sbjct: 593 RRVVEAFSVLQFMKENGLRPD 613



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 98/199 (49%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L++  R          ++ +I L G    ++G   +  EMK  G+ PN+I
Sbjct: 451 KGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNII 510

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  GR+ R  +     + M  +GL P+   Y +L+ AY +    +  L+V + M
Sbjct: 511 TYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM 570

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+++S+ + N+L+    +     EAF + + MK +   +PD  T+++++       +
Sbjct: 571 KADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKEN-GLRPDVITYTTLMKALIRVEQ 629

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +   ++ EM+ +G  P+
Sbjct: 630 FDKVPVIYEEMITSGCAPD 648



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 115/260 (44%), Gaps = 9/260 (3%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 238
           + ++   P+  +Y+ LL +    R   D   + R   +++E  ++    L++ L++  A 
Sbjct: 181 LREHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFAR 240

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 297
               D A E+    ++     P S   +++I+     G+V+EAEA+F E   AG  +P  
Sbjct: 241 AALPDAALELLASAQAI-GLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRT 299

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 356
               +L++ Y +     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 300 RAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359

Query: 357 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 413
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419

Query: 414 LENACKLLELGLTLEVYTDI 433
           L +A    +     E+  D+
Sbjct: 420 LGHAMDAFDRMREEEIEPDV 439



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            ++LI  +G         +V + MK  G++P++ITY  L+  + R ++  +V  IY+EM 
Sbjct: 582 LNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMI 641

Query: 184 DNGLSPNWNTYASL 197
            +G +P+    A L
Sbjct: 642 TSGCAPDRKARAML 655


>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 903

 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 116/235 (49%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-IGVKPNM 156
           +AG V+ A GL   AR     +D  +++  I    T G+++  L++  EM+A  G+KPN 
Sbjct: 171 KAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNH 230

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITY   +   GR  +  +  ++  EM D G+    + Y+++  A+ R  + +   S  RE
Sbjct: 231 ITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLRE 290

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           + +  ++ +V  YN  +  C D G  +EA ++   M+     +PD  T++ ++  C   G
Sbjct: 291 IHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAG 350

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  +A  +F EM E G +P++   T+ I   G    +++ +     +   G+ P+
Sbjct: 351 QGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRPN 405



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 2/195 (1%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L++  +M   GVKP +I+YN ++   G+     Q   + +EM + GL P+  T+ S + A
Sbjct: 477 LSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIAA 536

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
              +   +D + + REM   G+      Y++ L   A  G  ++A  +  +M+ +    P
Sbjct: 537 LSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGA-GVSP 595

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
               +++ I  C   GK  EA  +  EM  AG  PNLF  ++ I   GK  R +  +  L
Sbjct: 596 TVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATISACGKDGRWEQGLALL 655

Query: 321 NRLPELGITPDDRFC 335
           N +P LG+TP++ FC
Sbjct: 656 NEMPALGLTPNE-FC 669



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 1/207 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++T+I   G  G  D  L +  EM   G+ P++IT+N+ +  +  + RP     + +EM 
Sbjct: 495 YNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIAALSNSGRPDDAVRLMREMP 554

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G++ +  TY+S L     A   E  LS+ REM+  G+  +V  Y   +  C + G  D
Sbjct: 555 RAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVSPTVICYTAAIRACGEAGKGD 614

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +  +M ++    P+ +++S+ I+ C   G+  +  A+ NEM   G  PN F  T+ 
Sbjct: 615 EALLLLREMPTA-GVTPNLFSYSATISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAA 673

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           I   G   + +  V     +   GI P
Sbjct: 674 ITGCGIGGQWERAVATFRSMIASGIQP 700



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 114/233 (48%), Gaps = 18/233 (7%)

Query: 117 WRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPW 173
           W + PN F+    I      G ++  L++   M+ +G V+P+++TYN ++   G+A +  
Sbjct: 294 WPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQGE 353

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   I++EM++ G+ P+  ++ + + A G     E+ LS++REM+  G++ ++  +N ++
Sbjct: 354 KAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVM 413

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQ---------------PDSWTFSSMITICSCRGKV 278
           + C   G  +EA + F ++                       D+ ++++ ++ C    + 
Sbjct: 414 SACIAAGQWEEALDFFTEVVDGSGAANGGGGGGPPPDPVEVADACSYNTALSACEVGEQW 473

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             A ++  +M + G +P +    ++I   GK    D  +  L  +PE G+ PD
Sbjct: 474 GRALSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALLREMPERGLMPD 526



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 113/252 (44%), Gaps = 5/252 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F++ I     +G  D  + +  EM   GV  + ITY++ L  +  A R  Q  ++ 
Sbjct: 526 DVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLL 585

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM   G+SP    Y + +RA G A  G++ L + REM   G+  ++  Y+  ++ C   
Sbjct: 586 REMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATISACGKD 645

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++   +  +M +     P+ + +++ IT C   G+   A A F  M+ +G +P +  
Sbjct: 646 GRWEQGLALLNEMPAL-GLTPNEFCYTAAITGCGIGGQWERAVATFRSMIASGIQPTVVG 704

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLP-ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
            TS +         D  +  L+ +  E GI P+++       V+        G LV  V+
Sbjct: 705 YTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQT---YAAVILACGNGGQGHLVAQVQ 761

Query: 359 KSNSKLGYVVKL 370
           +  +  G   +L
Sbjct: 762 RDMASAGITPRL 773



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 91/207 (43%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++  I+  G AG  D  L +  EM   GV PN+ +Y+  +   G+  R  Q   +  EM 
Sbjct: 600 YTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATISACGKDGRWEQGLALLNEMP 659

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL+PN   Y + +   G     E  ++ +R M   G+Q +V  Y + ++  A  G  D
Sbjct: 660 ALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIASGIQPTVVGYTSAVSALAHCGEVD 719

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E+  +MK     +P+  T++++I  C   G+      +  +M  AG  P L    S 
Sbjct: 720 LALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQVQRDMASAGITPRLTGYLSA 779

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           I+  G+     +    L  +   G+ P
Sbjct: 780 IRASGECGNWSEATSLLGEMEAAGVPP 806



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 122/285 (42%), Gaps = 52/285 (18%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  E A  ++        + D  +F+T I   G+ G  +  L+++ EM+  GV+PN+I
Sbjct: 348 KAGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRPNII 407

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMT---------------------------DNGLSP- 189
           T+N ++     A +  +    + E+                            +  LS  
Sbjct: 408 THNAVMSACIAAGQWEEALDFFTEVVDGSGAANGGGGGGPPPDPVEVADACSYNTALSAC 467

Query: 190 ----NWNTYASLLR-------------------AYGRARYGEDTLSVYREMKEKGMQLSV 226
                W    SLLR                   A G+   G+  L++ REM E+G+   V
Sbjct: 468 EVGEQWGRALSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALLREMPERGLMPDV 527

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             +N+ +A  ++ G  D+A  +  +M  +     D+ T+SS +T  +  G+  +A ++  
Sbjct: 528 ITFNSAIAALSNSGRPDDAVRLMREMPRA-GVAADAITYSSALTGLAHAGRWEQALSLLR 586

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EM  AG  P +   T+ I+  G+A + D+ +  L  +P  G+TP+
Sbjct: 587 EMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPN 631



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 2/172 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKA-IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ +      G  D  L +  EMK   G++PN  TY  ++   G   +   V  + ++M
Sbjct: 705 YTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQVQRDM 764

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G++P    Y S +RA G      +  S+  EM+  G+  +V+ YN  +  C   G  
Sbjct: 765 ASAGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAGVPPTVSCYNAAITACGKSGKW 824

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
            EA ++ ++M   +    DS T S+ I+ C   G+  +A  +  EMLE   E
Sbjct: 825 QEALDLLDEMP-GKGLVRDSGTLSAAISACQKAGRGVKAAGLVEEMLEMARE 875



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 3/179 (1%)

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
           KA     +   Y+  +  M +  R  +   I   M + G  PN     + L A G+A   
Sbjct: 116 KAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRV 175

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           ++ L + R+ +  G++L V  YN  +  C   G  + A  +  +M++    +P+  T+ +
Sbjct: 176 QEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQA 235

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            I +C   GK  EA ++  EM + G      V +++   +   +R D    A + L E+
Sbjct: 236 AIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAF---RRVDHWQAAASTLREI 291



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 91/227 (40%), Gaps = 36/227 (15%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L++   M  +G  PN    N  LD  G+A R  +   + ++   +G+  +  +Y   + A
Sbjct: 144 LDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPA 203

Query: 201 YGRARYGEDTLSVYREMK-EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--- 256
                  E  LS+ REM+ E G++ +   Y   + +C   G  DEA  +  +MK      
Sbjct: 204 CVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPL 263

Query: 257 ---------NC--QPDSW------------------TFSSMITICSCR--GKVSEAEAMF 285
                    N   + D W                   F+  + IC+C   G+  EA  + 
Sbjct: 264 KTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLL 323

Query: 286 NEMLE-AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + M E  G EP++     ++   GKA + +  +     + E+GI PD
Sbjct: 324 HFMREVGGVEPDVVTYNIVVAACGKAGQGEKAIEIFREMSEVGIKPD 370


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 132/270 (48%), Gaps = 9/270 (3%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           ++   F  +++ Y  A  FD  +  +  M+  GV PN+  +N+LL  + ++K   + + I
Sbjct: 135 VNVETFGIIMRKYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEI 194

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + +M  NG  +P+  TY+ LL  +G+A        VY EM + G Q  +  Y  ++    
Sbjct: 195 FDKM--NGRFNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLC 252

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  +EA  + +DM SS  CQP ++ +S ++       ++ +A A F +M + G  P++
Sbjct: 253 KTGRVEEAVLVVQDM-SSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDV 311

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGK 352
            V  +L+  + K ++ ++  R ++ +   GI P+ R    +LN +    K++       +
Sbjct: 312 VVYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRR 371

Query: 353 LVECVEKSNSKLGYVVKLLLEEQDIEGDFK 382
           +++  +  +     ++K+  E  ++E   K
Sbjct: 372 MIKRCQPDSDTYTMMIKMFCENDNVEMALK 401



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 106/210 (50%), Gaps = 3/210 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++ NV  A  ++D+  N ++  D   +S L++ +G A N      VY EM   G +P+++
Sbjct: 184 KSKNVRKAQEIFDKM-NGRFNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIV 242

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D++ +  R  +   + ++M+  G  P    Y+ L+  YG     ED ++ + +M
Sbjct: 243 TYGIMVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDM 302

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G+   V +YN L+     V   + AF + +DM+      P+S T++ ++      GK
Sbjct: 303 EKDGIVPDVVVYNALVTAFCKVKKFENAFRVMDDME-GHGIAPNSRTWNIILNKLISLGK 361

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
             EA  +F  M++   +P+    T +I+ +
Sbjct: 362 DDEAYRVFRRMIKRC-QPDSDTYTMMIKMF 390


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 2/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EM   + +  RN    + P   S L+K  G A      L+V+ + K    KP   TYN++
Sbjct: 144 EMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSV 203

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  + +  +  +V  +Y EM + G   P+  TY++L+ +Y +    +  + ++ EMK+  
Sbjct: 204 ILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNC 263

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           MQ +  +Y TLL +   VG  ++A ++FE+MK +  C P  +T++ +I      G+V EA
Sbjct: 264 MQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA-GCSPTVYTYTELIKGLGKAGRVDEA 322

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              + +ML  G  P++  L +L+   GK  R +++    + +     TP
Sbjct: 323 YGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTP 371



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 3/233 (1%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           SY+ + G  + A  L+D  ++   +     ++TL+ +Y   G  +  L+++EEMK  G  
Sbjct: 242 SYE-KLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P + TY  L+  +G+A R  +    YK+M  +GL+P+     +L+   G+    E+  +V
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNV 360

Query: 214 YREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           + EM       +V  YNT++ A+     +  E    F+ MK +++  P  +T+S +I   
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK-ADSVSPSEFTYSILIDGY 419

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
               +V +A  +  EM E GF P      SLI   GKA+R +        L E
Sbjct: 420 CKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKE 472



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 2/231 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI  Y   G  D  + +++EMK   ++P    Y  LL    +  +  +   ++
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM   G SP   TY  L++  G+A   ++    Y++M   G+   V   N L+ +   V
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKV 351

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G  +E   +F +M     C P   +++++I  +   +  VSE  + F++M      P+ F
Sbjct: 352 GRVEELTNVFSEM-GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF 410

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             + LI  Y K  R +  +  L  + E G  P       L+N + +  + E
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 123/269 (45%), Gaps = 5/269 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG V+ A+G Y     +    D    + L+ + G  G  +   NV+ EM      P ++
Sbjct: 315 KAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVV 374

Query: 158 TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +YN ++  +  +K    +V + + +M  + +SP+  TY+ L+  Y +    E  L +  E
Sbjct: 375 SYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEE 434

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M EKG       Y +L+         + A E+F+++K +      S  ++ MI      G
Sbjct: 435 MDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFG-NVSSRVYAVMIKHFGKCG 493

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K+SEA  +FNEM   G  P+++   +L+    KA   ++    L ++ E G   D     
Sbjct: 494 KLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHN 553

Query: 337 CLLNVMTQT--PKEELGKLVECVEKSNSK 363
            +LN   +T  P+  + ++ E ++ S  K
Sbjct: 554 IILNGFARTGVPRRAI-EMFETIKHSGIK 581



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 1/223 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   VE A  L +    + +   P A+ +LI   G A  ++    +++E+K      +  
Sbjct: 421 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSR 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++   G+  +  +   ++ EM + G  P+   Y +L+    +A    +  S+ R+M
Sbjct: 481 VYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKM 540

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G +  +  +N +L   A  G    A E+FE +K S   +PD  T+++++   +  G 
Sbjct: 541 EENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHS-GIKPDGVTYNTLLGCFAHAGM 599

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
             EA  M  EM + GFE +    +S++   G      D V + 
Sbjct: 600 FEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDVSSF 642



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 3/215 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + P+ F  S LI  Y      +  L + EEM   G  P    Y +L++ +G+AKR     
Sbjct: 405 VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAAD 464

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++KE+ +N  + +   YA +++ +G+     + + ++ EMK +G    V  YN L++  
Sbjct: 465 ELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  +EA  +   M+ +  C+ D  + + ++   +  G    A  MF  +  +G +P+
Sbjct: 525 VKAGMINEANSLLRKMEEN-GCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPD 583

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                +L+ C+  A   ++  R +  + + G   D
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYD 618



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 36/228 (15%)

Query: 158 TYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TY  L+  +  A+   ++ +TI + + +  +S +    + L++A GRA+     LSV+ +
Sbjct: 128 TYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQ 187

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT------ 270
            K +  + + + YN+++ M    G  ++  E++ +M +  +C PD+ T+S++I+      
Sbjct: 188 AKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLG 247

Query: 271 -----------------------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
                                        I    GKV +A  +F EM  AG  P ++  T
Sbjct: 248 RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYT 307

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            LI+  GKA R D+       +   G+TPD  F   L+N++ +  + E
Sbjct: 308 ELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVE 355


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 124/235 (52%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G++E A  L++  + +  R D   +++LI  YG  G   G ++V+EEMK  G +P++
Sbjct: 262 AREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDV 321

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITYN+L++   + +R  Q       M   GL PN  TY++L+ A+ +A    +    + +
Sbjct: 322 ITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVD 381

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G+Q +   Y +L+     +G  +EAF++  +M+ +     +  T+++++      G
Sbjct: 382 MIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQA-GVNLNIVTYTALLDGLCEDG 440

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++ EAE +F  +L+AG+  N  + TSL   Y KA+  +  +  L  + +  + PD
Sbjct: 441 RMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPD 495



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 120/254 (47%), Gaps = 21/254 (8%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIK-------LYGTAGNFDG--CLNVYEEMKAIG 151
           NV +  G+ + AR   W++  N F  L K       L+  + +  G   L+ +++M   G
Sbjct: 189 NVLVDLGMLEEARQCFWKM--NKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAG 246

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P++ TYN ++  + R       +++++EM   GL P+  TY SL+  YG+       +
Sbjct: 247 LSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAV 306

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
           SV+ EMK+ G +  V  YN+L+          +AFE    MK     QP+  T+S++I  
Sbjct: 307 SVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMK-QRGLQPNVVTYSTLIDA 365

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G + EA   F +M+  G +PN F  TSLI    K    ++  +  + + + G+   
Sbjct: 366 FCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVN-- 423

Query: 332 DRFCGCLLNVMTQT 345
                  LN++T T
Sbjct: 424 -------LNIVTYT 430



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 4/236 (1%)

Query: 96  DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           D R    E  FG   +A    W ++   +++L   Y  A   +  +++ EEM    +KP+
Sbjct: 439 DGRMREAEELFGALLKA---GWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPD 495

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ Y   +  + R         + +EM D GL+ N   Y +L+ AY +     + +++ +
Sbjct: 496 LLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQ 555

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM++ G++++V  Y  L+     +G   +A   F+ M +    QP+   ++++I      
Sbjct: 556 EMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHM-TRNGLQPNIMIYTALIDGLCKN 614

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + EA+ +FNEML+ G  P+  V TSLI    K     + +   NR+ E+G+  D
Sbjct: 615 DCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELD 670



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 5/247 (2%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + P+ F+   +I      G+ +   +++EEMKA G++P+++TYN+L+D  G+        
Sbjct: 247 LSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAV 306

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           ++++EM D G  P+  TY SL+  + +             MK++G+Q +V  Y+TL+   
Sbjct: 307 SVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAF 366

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   EA + F DM      QP+ +T++S+I      G ++EA  + +EM +AG   N
Sbjct: 367 CKAGMLLEANKFFVDMIRV-GLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLN 425

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
           +   T+L+    +  R  +       L + G T + +    L +   +    E  K ++ 
Sbjct: 426 IVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMME--KAMDI 483

Query: 357 VEKSNSK 363
           +E+ N K
Sbjct: 484 LEEMNKK 490



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 128/275 (46%), Gaps = 4/275 (1%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
             F TL  +    G  +     + +M    V P + + N LL  + ++ +     + +K+
Sbjct: 182 GVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKD 241

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   GLSP+  TY  ++    R    E   S++ EMK KG++  +  YN+L+     VG 
Sbjct: 242 MVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGM 301

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVL 300
              A  +FE+MK +  C+PD  T++S+I  C C+  ++ +A    + M + G +PN+   
Sbjct: 302 LTGAVSVFEEMKDA-GCEPDVITYNSLIN-CFCKFERIPQAFEYLHGMKQRGLQPNVVTY 359

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
           ++LI  + KA    +  +    +  +G+ P++     L++   +     E  KL   +++
Sbjct: 360 STLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQ 419

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
           +   L  V    L +   E    +EA ELF ++ K
Sbjct: 420 AGVNLNIVTYTALLDGLCEDGRMREAEELFGALLK 454



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 167/423 (39%), Gaps = 68/423 (16%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN F+  +LI      G+ +    +  EM+  GV  N++TY  LLD +    R  + +
Sbjct: 387 LQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAE 446

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRAR-----------------------YG------ 207
            ++  +   G + N   Y SL   Y +A+                       YG      
Sbjct: 447 ELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGL 506

Query: 208 ------EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
                 ED+++V REM + G+  +  +Y TL+     VG T EA  + ++M+     +  
Sbjct: 507 CRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDL-GIKIT 565

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             T+  +I      G V +A   F+ M   G +PN+ + T+LI    K    ++     N
Sbjct: 566 VVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFN 625

Query: 322 RLPELGITPDDRFCGCLL--NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
            + + GI+PD      L+  N+    P E L      VE     +G  + L      I G
Sbjct: 626 EMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVE-----IGMELDLCAYTSLIWG 680

Query: 380 DFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPT 439
             +    +L  S+  ++ +     + D  + + LL    +L ++   L ++ D+  R   
Sbjct: 681 FSRYGQVQLAKSLLDEMLRK--GIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLI 738

Query: 440 QWSLHLKSLSLGAALTALH----------------IWINDLSKALESGEEFPPLLGINTG 483
             ++ +   S   A+T LH                +++ D+ +   SG  F PL     G
Sbjct: 739 SGTIDITVPSCLTAVTKLHKLCASQSGTDFHRTANLYLADVEEFSHSGMPFSPL-----G 793

Query: 484 HGK 486
           H +
Sbjct: 794 HAR 796



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 15/203 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A  L    ++   +I    +  LI      G     +  ++ M   G++PN++
Sbjct: 543 KVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIM 602

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYR 215
            Y  L+D + +     + K ++ EM D G+SP+   Y SL+   G  ++G   + LS+  
Sbjct: 603 IYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLID--GNMKHGNPGEALSLRN 660

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M E GM+L +  Y +L+   +  G    A  + ++M   +   PD      ++ IC  R
Sbjct: 661 RMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEML-RKGIIPD-----QVLCICLLR 714

Query: 276 -----GKVSEAEAMFNEMLEAGF 293
                G ++EA A+ ++M   G 
Sbjct: 715 KYYELGDINEALALHDDMARRGL 737


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 114/227 (50%), Gaps = 2/227 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A G+ +     +       +++++  Y   GN    L V++ +K  G++P ++
Sbjct: 372 KAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVV 431

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN+LL  + +A++    + +  EM  NG+ P+   Y +L   Y R    E    V++ M
Sbjct: 432 SYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRM 491

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-G 276
           K++ + + +  Y  LL  C + G    A E+F+ +  +   + +  T+ +M+     R G
Sbjct: 492 KKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDA-GLKHNQITYCTMLDGAYARAG 550

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           +V EAE + + M   G +P+  +  SLI  YG + R +D+   L ++
Sbjct: 551 RVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKM 597



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 147/341 (43%), Gaps = 49/341 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +AGN+  A  + +    +K  + PN   ++ ++  Y   G+F     V+E+M + G+KP+
Sbjct: 302 QAGNMAKALDILEEM--DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPD 359

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ YN L+    +A R  +   + + +  N L P   TY S+L  Y +    +  L V+ 
Sbjct: 360 IVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFD 419

Query: 216 EMKEKGMQLSVTLYNTLLAMCADV-----------------------------------G 240
            +K  G++  V  YN+LL+  A                                     G
Sbjct: 420 RIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTG 479

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             ++AF +F+ MK  EN   D   + +++  C   G +  A  +F ++ +AG + N    
Sbjct: 480 DVEKAFGVFQRMK-KENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITY 538

Query: 301 TSLIQ-CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358
            +++   Y +A R ++    ++ +   G  PD      L+N    + + E++  L+  + 
Sbjct: 539 CTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMV 598

Query: 359 KSNSK-----LGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
           KS+SK     +G    L+  +   +  F   A ELF  +++
Sbjct: 599 KSSSKQTKPDIGTYNTLI--QVYAQAGFIPRAEELFQGLAR 637



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 5/177 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G+VE AFG++ R + E   ID  A+  L+K    +G   G   V++++   G+K N 
Sbjct: 476 ARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQ 535

Query: 157 ITYNNLLD-TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ITY  +LD    RA R  + + +   M  +G  P+   Y SL+ AYG +   ED  ++  
Sbjct: 536 ITYCTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLA 595

Query: 216 EM---KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +M     K  +  +  YNTL+ + A  G+   A E+F+ + +     PD+ T+++++
Sbjct: 596 KMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGL-ARLKLVPDATTWTALM 651



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 1/217 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +F   +K+   AGN    L++ EEM   GV PN + Y  ++D   R         ++++M
Sbjct: 292 SFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDM 351

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              GL P+   Y  L+ A+ +A   +  L V   ++   +  ++  Y ++L      G  
Sbjct: 352 VSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNI 411

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +A E+F+ +K++   +P   +++S+++  +   ++  A  M NEML  G  P+  + T+
Sbjct: 412 QKALEVFDRIKTA-GLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTA 470

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           L + Y +    +       R+ +  +  D    G LL
Sbjct: 471 LTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALL 507



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 8/197 (4%)

Query: 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
           AGN+   +N ++ +     KP +  Y  L+D   R       +  ++ M  + + PN + 
Sbjct: 113 AGNWHKIVNAFQVID----KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHI 168

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           Y SL+ AY  AR  E  ++   EM  +G+QL+  ++ ++++  A  G  + A   FE  K
Sbjct: 169 YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK 228

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
            +EN  P    ++S++      G +   EA+  +M E GF+ NL + T+++  + + +  
Sbjct: 229 -AENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDE 287

Query: 314 DDVVRALNRL---PELG 327
           +  +   +RL   P+ G
Sbjct: 288 EKCLSFFHRLKVSPQAG 304



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 109/246 (44%), Gaps = 20/246 (8%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G+   A   ++  R    + + + +++LI  Y  A + +G +   EEM + G++ N 
Sbjct: 142 ARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNE 201

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             + +++     A      +  +++     L P    Y S+++AY +A   E   ++  +
Sbjct: 202 AVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQ 261

Query: 217 MKEKGMQLSVTLYNTLLAMCADV-------------------GYTDEAFEIFEDMKSSEN 257
           M+E+G Q ++ LY T+L   A++                   G   +A +I E+M     
Sbjct: 262 MEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEM-DKHG 320

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             P+   ++ ++   +  G  + A  ++ +M+ AG +P++ +   L+  + KA R D  +
Sbjct: 321 VSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKAL 380

Query: 318 RALNRL 323
             L  +
Sbjct: 381 GVLENI 386


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 2/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EM   + +  RN    + P   S L+K  G A      L+V+ + K    KP   TYN++
Sbjct: 144 EMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSV 203

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  + +  +  +V  +Y EM + G   P+  TY++L+ +Y +    +  + ++ EMK+  
Sbjct: 204 ILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNC 263

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           MQ +  +Y TLL +   VG  ++A ++FE+MK +  C P  +T++ +I      G+V EA
Sbjct: 264 MQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA-GCSPTVYTYTELIKGLGKAGRVDEA 322

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              + +ML  G  P++  L +L+   GK  R +++    + +     TP
Sbjct: 323 YGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTP 371



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 3/233 (1%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           SY+ + G  + A  L+D  ++   +     ++TL+ +Y   G  +  L+++EEMK  G  
Sbjct: 242 SYE-KLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P + TY  L+  +G+A R  +    YK+M  +GL+P+     +L+   G+    E+  +V
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNV 360

Query: 214 YREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           + EM       +V  YNT++ A+     +  E    F+ MK +++  P  +T+S +I   
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK-ADSVSPSEFTYSILIDGY 419

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
               +V +A  +  EM E GF P      SLI   GKA+R +        L E
Sbjct: 420 CKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKE 472



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 2/231 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI  Y   G  D  + +++EMK   ++P    Y  LL    +  +  +   ++
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM   G SP   TY  L++  G+A   ++    Y++M   G+   V   N L+ +   V
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKV 351

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G  +E   +F +M     C P   +++++I  +   +  VSE  + F++M      P+ F
Sbjct: 352 GRVEELTNVFSEM-GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF 410

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             + LI  Y K  R +  +  L  + E G  P       L+N + +  + E
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 123/269 (45%), Gaps = 5/269 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG V+ A+G Y     +    D    + L+ + G  G  +   NV+ EM      P ++
Sbjct: 315 KAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVV 374

Query: 158 TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +YN ++  +  +K    +V + + +M  + +SP+  TY+ L+  Y +    E  L +  E
Sbjct: 375 SYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEE 434

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M EKG       Y +L+         + A E+F+++K +      S  ++ MI      G
Sbjct: 435 MDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFG-NVSSRVYAVMIKHFGKCG 493

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K+SEA  +FNEM   G  P+++   +L+    KA   ++    L ++ E G   D     
Sbjct: 494 KLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHN 553

Query: 337 CLLNVMTQT--PKEELGKLVECVEKSNSK 363
            +LN   +T  P+  + ++ E ++ S  K
Sbjct: 554 IILNGFARTGVPRRAI-EMFETIKHSGIK 581



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 1/223 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   VE A  L +    + +   P A+ +LI   G A  ++    +++E+K      +  
Sbjct: 421 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSR 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++   G+  +  +   ++ EM + G  P+   Y +L+    +A    +  S+ R+M
Sbjct: 481 VYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKM 540

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G +  +  +N +L   A  G    A E+FE +K S   +PD  T+++++   +  G 
Sbjct: 541 EENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHS-GIKPDGVTYNTLLGCFAHAGM 599

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
             EA  M  EM + GFE +    +S++   G      D V + 
Sbjct: 600 FEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDVSSF 642



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 3/215 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + P+ F  S LI  Y      +  L + EEM   G  P    Y +L++ +G+AKR     
Sbjct: 405 VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAAN 464

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++KE+ +N  + +   YA +++ +G+     + + ++ EMK +G    V  YN L++  
Sbjct: 465 ELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  +EA  +   M+ +  C+ D  + + ++   +  G    A  MF  +  +G +P+
Sbjct: 525 VKAGMINEANSLLRKMEEN-GCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPD 583

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                +L+ C+  A   ++  R +  + + G   D
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYD 618



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 36/228 (15%)

Query: 158 TYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TY  L+  +  A+   ++ +TI + + +  +S +    + L++A GRA+     LSV+ +
Sbjct: 128 TYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQ 187

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT------ 270
            K +  + + + YN+++ M    G  ++  E++ +M +  +C PD+ T+S++I+      
Sbjct: 188 AKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLG 247

Query: 271 -----------------------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
                                        I    GKV +A  +F EM  AG  P ++  T
Sbjct: 248 RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYT 307

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            LI+  GKA R D+       +   G+TPD  F   L+N++ +  + E
Sbjct: 308 ELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVE 355


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 36/262 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L    R+     + + +S L+ +   A   D   +VY++M   G  PN++TYN L+D
Sbjct: 19  ALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILID 78

Query: 165 T-----------------------------------MGRAKRPWQVKTIYKEMTDNGLSP 189
                                                 ++ +P Q   +Y++M   G+ P
Sbjct: 79  VEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKP 138

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           +  TY +L+ AYG+    E  L ++R+M  +G + +V  Y++L++ C   G  + A E+F
Sbjct: 139 SATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELF 198

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
             M   ENC+P+  T++S+I  CS  G   +A  +F +M   G +P+      LI  Y +
Sbjct: 199 SKMH-KENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYER 257

Query: 310 AQRTDDVVRALNRLPELGITPD 331
             +    ++A  ++   G  PD
Sbjct: 258 GGQWRRALKAFEQMQSQGCHPD 279



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 1/181 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++T+I     +G  +  L VYE+M A GVKP+  TY  L+   G+  +  +   I+++M 
Sbjct: 108 YNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMI 167

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G   N  TY+SL+ A  +A   E  L ++ +M ++  + +V  YN+L+A C+  G+ +
Sbjct: 168 RRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWE 227

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A E+FE M+ ++ C+PDS T+  +IT     G+   A   F +M   G  P+  V  SL
Sbjct: 228 KASELFEQMQ-TQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSL 286

Query: 304 I 304
           +
Sbjct: 287 M 287



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 106/208 (50%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++T+I   G+       L +  EM++ G+  N+ TY+ L++   +A      + +YK+M 
Sbjct: 3   YTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQML 62

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G SPN  TY  L+      R   +   +   +   G+Q  V  YNT+++ C   G  +
Sbjct: 63  EEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPE 122

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A +++E M ++   +P + T++++I+    +G+V +A  +F +M+  G E N+   +SL
Sbjct: 123 QALKVYEKMLAA-GVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSL 181

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I    KA R +  +   +++ +    P+
Sbjct: 182 ISACEKAGRWEMALELFSKMHKENCKPN 209



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 1/172 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G  E A  +Y++      +     ++ LI  YG  G  +  L+++ +M   G + N+I
Sbjct: 117 KSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVI 176

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+    +A R      ++ +M      PN  TY SL+ A     + E    ++ +M
Sbjct: 177 TYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQM 236

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           + +G +     Y  L+      G    A + FE M+ S+ C PD+  F+S++
Sbjct: 237 QTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQ-SQGCHPDAAVFNSLM 287



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++   G  ++  +   +  EM   G+  N +TY++L+    +A   +    VY++M
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 61

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E+G   ++  YN L+ + A    T E   +   +  S   Q +  T++++I+ C+  G+
Sbjct: 62  LEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRS-GIQAEVRTYNTVISACNKSGQ 120

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD---DVVRALNRLPELGITPDDRF 334
             +A  ++ +ML AG +P+    T+LI  YGK  + +   D+ R + R            
Sbjct: 121 PEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRR----------- 169

Query: 335 CGCLLNVMT 343
            GC  NV+T
Sbjct: 170 -GCERNVIT 177


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 115/229 (50%), Gaps = 2/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EM   + +  RN    + P   S L+K  G A      L+V+ + K    KP   TYN++
Sbjct: 144 EMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSV 203

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  + +  +  +V  +Y EM + G   P+  TY++L+ +Y +    +  + ++ EMK+  
Sbjct: 204 ILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNC 263

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           MQ +  +Y TLL +   VG  ++A ++FE+MK +  C P  +T++ +I      G+V EA
Sbjct: 264 MQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA-GCSPTVYTYTELIKGLGKAGRVEEA 322

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             ++  ML  G  P++  L +L+   GK  R +++    N +     TP
Sbjct: 323 YDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTP 371



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 2/249 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG VE A+ LY     +    D    + L+ + G  G  +   NV+ EM      P ++
Sbjct: 315 KAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVV 374

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +YN ++  +  +K P  +V + + +M  +G+SP+  TY+ L+  Y +    E  L +  E
Sbjct: 375 SYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEE 434

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M EKG       Y +L+         + A E+F+++K +      S  ++ MI      G
Sbjct: 435 MDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFG-NVSSRVYAVMIKHFGKCG 493

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K+SEA  +FNEM   G  P+++   +L+    KA   ++    L ++ E G T D     
Sbjct: 494 KLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHN 553

Query: 337 CLLNVMTQT 345
            +LN   +T
Sbjct: 554 IILNGFART 562



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 3/233 (1%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           SY+ + G  + A  L+D  ++   +     ++TL+ +Y   G  +  L+++EEMK  G  
Sbjct: 242 SYE-KLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P + TY  L+  +G+A R  +   +YK M  +GL+P+     +L+   G+    E+  +V
Sbjct: 301 PTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNV 360

Query: 214 YREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           + EM       +V  YNT++ A+        E    F+ MK ++   P  +T+S +I   
Sbjct: 361 FNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMK-ADGVSPSEFTYSILIDGY 419

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
               +V +A  +  EM E GF P      SLI   GKA+R +        L E
Sbjct: 420 CKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKE 472



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 2/231 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI  Y   G  D  + +++EMK   ++P    Y  LL    +  +  +   ++
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM   G SP   TY  L++  G+A   E+   +Y+ M   G+   V   N L+ +   V
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKV 351

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G  +E   +F +M  +  C P   +++++I  +   +  VSE  + F++M   G  P+ F
Sbjct: 352 GRLEELTNVFNEM-GTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEF 410

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             + LI  Y K  R +  +  L  + E G  P       L+N + +  + E
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 110/253 (43%), Gaps = 39/253 (15%)

Query: 117 WRIDPN--AFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           WR  P   +++T+IK L+ +        + +++MKA GV P+  TY+ L+D   +  R  
Sbjct: 367 WRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVE 426

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G  P    Y SL+ A G+A+  E    +++E+KE    +S  +Y  ++
Sbjct: 427 KALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMI 486

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA---------- 283
                 G   EA ++F +MK+ +   PD + ++++++     G V+EA +          
Sbjct: 487 KHFGKCGKLSEAVDLFNEMKN-QGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGC 545

Query: 284 -------------------------MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
                                    MF  M   G +P+     +L+ C+  A   ++  R
Sbjct: 546 TADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAAR 605

Query: 319 ALNRLPELGITPD 331
            +  + + G   D
Sbjct: 606 LMREMKDKGFEYD 618



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 1/223 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   VE A  L +    + +   P A+ +LI   G A  ++    +++E+K      +  
Sbjct: 421 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSR 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++   G+  +  +   ++ EM + G  P+   Y +L+    +A    +  S+ R+M
Sbjct: 481 VYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKM 540

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G    +  +N +L   A  G    A E+FE MK     +PD  T+++++   +  G 
Sbjct: 541 EENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHC-GIKPDGVTYNTLLGCFAHAGM 599

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
             EA  +  EM + GFE +    +S++   G      D V +L
Sbjct: 600 FEEAARLMREMKDKGFEYDAITYSSILDAVGNMDHEKDDVSSL 642



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 44/217 (20%)

Query: 178 IYKEMTDNGLSPNWNTYAS--------LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
           +Y EM         NTY S        L++A GRA+     LSV+ + K +  + + + Y
Sbjct: 141 LYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTY 200

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT------------------- 270
           N+++ M    G  ++  E++ +M +  +C PD+ T+S++I+                   
Sbjct: 201 NSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMK 260

Query: 271 ----------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
                           I    GKV +A  +F EM  AG  P ++  T LI+  GKA R +
Sbjct: 261 DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVE 320

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EEL 350
           +       +   G+TPD  F   L+N++ +  + EEL
Sbjct: 321 EAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEEL 357


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 122/254 (48%), Gaps = 18/254 (7%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y   A  VE AF L+   +      D   ++TLI  +  AG  +   N ++EM+  G  P
Sbjct: 231 YLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAP 290

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N++TY  L+    ++++  +   +Y+ M   G +PN  TY +L+    +A   E    +Y
Sbjct: 291 NVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIY 350

Query: 215 REMKEKGMQL-----------------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           + MK++ +++                 +V  Y  L+          EA ++ + M S E 
Sbjct: 351 KIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSM-SVEG 409

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           C+P+   + ++I  C   GK+ EA+ +F  MLE G++PN++  +SLI    K +R D  +
Sbjct: 410 CEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLAL 469

Query: 318 RALNRLPELGITPD 331
           + L+++ E    P+
Sbjct: 470 KVLSKMLENSCAPN 483



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 120 DPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DPN +  S+LI         D  L V  +M      PN++ Y  ++D + +  +  +   
Sbjct: 446 DPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYK 505

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +   M + G +PN  TY +++  +G++   E  L + ++M  KG   +   Y  L+  C 
Sbjct: 506 LMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCC 565

Query: 238 DVGYTDEAFEIFEDMKSS 255
             G  DEA ++ E+MK +
Sbjct: 566 STGLLDEAHKLLEEMKQT 583



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 43/258 (16%)

Query: 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           E++  D   ++ +I     A  F+  ++    M+A    PN++TY  LL      ++  +
Sbjct: 36  EEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGR 95

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRA------------------------------ 204
            K I   M   G  P+   + SL+ AY R+                              
Sbjct: 96  CKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIG 155

Query: 205 ------RYGEDTLSV----YREMKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMK 253
                   G+D L +    Y EM E G+ L+ V + N    +C  +G  ++A+ +  +M 
Sbjct: 156 GICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCG-IGKFEKAYNVIREMM 214

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
            S+   PD+ T+S +I       KV +A  +F EM   G  P+++V T+LI  + KA   
Sbjct: 215 -SKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFI 273

Query: 314 DDVVRALNRLPELGITPD 331
           +      + +   G  P+
Sbjct: 274 EQARNWFDEMERDGCAPN 291


>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +Y+        +D + +  +I     +G  D    +++EMK   ++P+ + + +L+D
Sbjct: 216 AFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVD 275

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +MG+A R      +Y EM   GL P+   Y SL+ ++ +A   E  L ++ EMK+ G + 
Sbjct: 276 SMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRP 335

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +  LY  ++   A  G  + A  +F DM+ +    P   T+S ++ + S  G+V  A  +
Sbjct: 336 NYGLYTMVVESHAKSGKLETAMSVFSDMEKA-GFLPTPSTYSCLLEMHSASGQVDSAMKL 394

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +N M  AG  P L   T+L+      +  D   + L  +  +G + D
Sbjct: 395 YNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVD 441



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 183/405 (45%), Gaps = 48/405 (11%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G ++ AF L+   + +  R     F++L+   G AG  D  + VY EM+  G++P+ 
Sbjct: 243 AKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSA 302

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             Y +L+++  +A +      I+ EM   G  PN+  Y  ++ ++ ++   E  +SV+ +
Sbjct: 303 TMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSD 362

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G   + + Y+ LL M +  G  D A +++  M ++   +P   T+++++T+ + + 
Sbjct: 363 MEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSM-TNAGLRPGLSTYTALLTLLANKK 421

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD---- 332
            V  A  +  EM   GF  ++   + ++  Y K    D  +R L  +   GI  ++    
Sbjct: 422 LVDVAAKVLLEMKAMGFSVDVSA-SDVLMVYIKDGSVDLALRWLRFMGSSGIRTNNFIIR 480

Query: 333 -RFCGCLLNVMTQTPK-------------------EELGKLVECVEKSNSKLGYVVKLLL 372
             F  C+ N + ++ K                     L  LV C E+ N +  +++ +L 
Sbjct: 481 QLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLVRCQEEQNER--HLMLILS 538

Query: 373 EEQDIEGDF----------KKEAT-----ELFNSISKDVKKA----YCNCLIDLCVNLNL 413
             +     F          +K+       E F S+  ++++     + N L++  V +  
Sbjct: 539 ATKHKAHTFMCGLFTGPEQRKQPVLSFVREFFQSVDYELEEGAARYFVNVLLNYLVLMGQ 598

Query: 414 LENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTAL 457
           +  A  + ++    +++   I       WSL +++LS+GAAL A+
Sbjct: 599 INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALVAV 643



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 127/287 (44%), Gaps = 17/287 (5%)

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++I  N ++  + +A++       +K++ D+G   +  TY SL+  +           VY
Sbjct: 161 SVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVY 220

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             M+  G  L  + Y  ++   A  G  D AF++F++MK  +N +P    F+S++     
Sbjct: 221 ESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMK-EKNLRPSFLVFASLVDSMGK 279

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G++  +  ++ EM   G  P+  +  SLI+ + KA + +  +R  + + + G  P+   
Sbjct: 280 AGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGL 339

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV-----VKLLLEEQDIEGDFKKEATELF 389
              ++    ++ K E       V     K G++        LLE     G     A +L+
Sbjct: 340 YTMVVESHAKSGKLETAM---SVFSDMEKAGFLPTPSTYSCLLEMHSASGQV-DSAMKLY 395

Query: 390 NSISKDVKK---AYCNCLIDLCVNLNLLENACKLL----ELGLTLEV 429
           NS++    +   +    L+ L  N  L++ A K+L     +G +++V
Sbjct: 396 NSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDV 442


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 117/234 (50%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  + ++ + E+ +    AF  +I+ Y  AG+    L+  + M+  G  P ++
Sbjct: 525 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 584

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + R  +  +  ++  +M+  G++PN +TY  ++R Y  +         + ++
Sbjct: 585 TYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKI 644

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G++L V +Y TLL  C   G    A  +  +M S +    +++ ++ +I   + RG 
Sbjct: 645 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREM-SFQKIPRNTFIYNILIDGWARRGD 703

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EAE +  +M E G  PN+   TS I    KA       + +  + ++G+ P+
Sbjct: 704 VWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPN 757



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 107/235 (45%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN+E A  L      +      + + +++  Y    N + CL V+E +K  G KP++I
Sbjct: 385 QSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSII 444

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  LL+   +  +  +  +I KEM   G+  N  TY+ L+  +       +  +++ EM
Sbjct: 445 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 504

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+Q    +YN L+     +G  D A  I E M+  E  QP +  F  +I   +  G 
Sbjct: 505 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ-KERMQPSNRAFRPIIEGYAVAGD 563

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A    + M  +G  P +    +LI    +  +    V  L+++   GITP++
Sbjct: 564 MKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 618



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 120/249 (48%), Gaps = 15/249 (6%)

Query: 95  YDTRAGNVEMAFGLYD--RARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAI 150
           Y  + G+   A   ++  RAR     I+PNAF  ++L+  Y  A +  G L+  EEMK+ 
Sbjct: 306 YYAKRGDKHHARATFENMRARG----IEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE 361

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQ------VKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           G++  ++TY+ L+    +     Q       + + +EM ++G+    + Y S++  Y   
Sbjct: 362 GLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTII 421

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
           +     L V+  +KE G + S+  Y  LL +   +G   +A  I ++M+S    + ++ T
Sbjct: 422 QNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESC-GIKHNNKT 480

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           +S +I         + A A+F EML +G +P+  +   LI+ + K    D  +  L ++ 
Sbjct: 481 YSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ 540

Query: 325 ELGITPDDR 333
           +  + P +R
Sbjct: 541 KERMQPSNR 549



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G++  AF  + + +    ++D   + TL++    +G     L V  EM    +  N   
Sbjct: 631 SGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFI 690

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+D   R    W+ + + K+M ++G+ PN +TY S + A  +A   +    V  EM 
Sbjct: 691 YNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMV 750

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G++ +V  Y TL+   A V   D A + FE+MK +   +PD  ++  ++T    R  V
Sbjct: 751 DVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA-GLKPDEASYHCLVTSLLSRATV 809

Query: 279 SEA 281
            E 
Sbjct: 810 MEG 812



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 128/326 (39%), Gaps = 47/326 (14%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGT-AGNFDGC---LNVYEE-----MKAIGVKPNMITYNNL 162
           +R + W+   +AF  + KL G  +  F  C   L+V +       K +  +P+   +  +
Sbjct: 244 SRPDNWQAVVSAFERIPKLSGVVSAYFPLCKQSLDVLDLTYPFLFKKLLHEPSRREFGLM 303

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +    +       +  ++ M   G+ PN   + SL+ AY  AR     LS   EMK +G+
Sbjct: 304 IVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGL 363

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +L++  Y+ L++  A +  + ++                              G +  AE
Sbjct: 364 ELTIVTYSILISGFAKINDSHQS------------------------------GNMERAE 393

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            +  EM E G +  + V  S++  Y   Q  +  +    RL E G  P     GCLLN+ 
Sbjct: 394 ELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLY 453

Query: 343 TQTPKE----ELGKLVEC--VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
            +  K      + K +E   ++ +N     ++   +   D    F      L + +  D 
Sbjct: 454 VKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPD- 512

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLE 422
            +A  N LI+    +  ++ A  +LE
Sbjct: 513 -RAIYNLLIEAFCKMGNMDRAICILE 537



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 67/136 (49%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G ++ A  +      +K   +   ++ LI  +   G+     ++ ++MK  GV PN+ 
Sbjct: 665 KSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIH 724

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY + ++   +A    + + + +EM D GL PN  TY +L++ + R    +  L  + EM
Sbjct: 725 TYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEM 784

Query: 218 KEKGMQLSVTLYNTLL 233
           K  G++     Y+ L+
Sbjct: 785 KLAGLKPDEASYHCLV 800


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 1/221 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  +Y R + E+ R +   ++ +I +YG A      L V+ EMK IG KPN+ TY  L
Sbjct: 252 EKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTAL 311

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++   R     + + +++EM   G  P+   Y +L+ AY RA   +    ++  M+  G 
Sbjct: 312 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGC 371

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +     YN L+      G   EA   F+++K  +  +P   +   +++  +  G V+  E
Sbjct: 372 EPDRASYNILVDAYGRAGLHQEAEAAFQELK-QQGMRPTMKSHMLLLSAHAKSGNVARCE 430

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            +  ++ ++G  P+ F L +++  YG+A R DD+ R L  +
Sbjct: 431 EVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAM 471



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 1/209 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L++ Y  +G       V  EM+  G+ P    YN  LD + +A+   +   +Y+ 
Sbjct: 201 DTYALLLRAYCNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQR 260

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M       N  TY  ++  YG+A+    +L V+ EMK  G + ++  Y  L+   A  G 
Sbjct: 261 MKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGL 320

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A E+FE+M+ + + +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 321 CEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYN 379

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
            L+  YG+A    +   A   L + G+ P
Sbjct: 380 ILVDAYGRAGLHQEAEAAFQELKQQGMRP 408



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 1/215 (0%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           +R D   ++ LI  YG     +   ++Y  +      P   TY  LL     + +  + +
Sbjct: 161 FRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAE 220

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM  NGL P    Y + L    +AR  E  + VY+ MK++  + +   Y  ++ + 
Sbjct: 221 GVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVY 280

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                   + ++F +MK+   C+P+  T+++++   +  G   +AE +F EM +AG EP+
Sbjct: 281 GKAKQPMSSLKVFNEMKTI-GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 339

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++   +L++ Y +A          + +  +G  PD
Sbjct: 340 VYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPD 374



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 113/275 (41%), Gaps = 7/275 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G  E A  +++  +      D  A++ L++ Y  AG   G   ++  M+ +G +P+ 
Sbjct: 316 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 375

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN L+D  GRA    + +  ++E+   G+ P   ++  LL A+ ++        V  +
Sbjct: 376 ASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQ 435

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDE------AFEIFEDMKSSENCQPDSWTFSSMIT 270
           + + G++      N +L      G  D+      A E   D  +     PD+ T++ ++ 
Sbjct: 436 LHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVN 495

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +    G +   EA F  +   G   ++   TS I  Y + +     +     + + G  P
Sbjct: 496 VYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEIFEEMVDAGCYP 555

Query: 331 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 364
           D      LL   +   + E++  +V  + K    L
Sbjct: 556 DAGTAKVLLAACSDERQVEQVTAIVRSMHKDAKTL 590



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 7/166 (4%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK----- 148
           S   ++GNV     +  +      R D  A + ++  YG AG  D    +   M+     
Sbjct: 418 SAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDD 477

Query: 149 --AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
               G  P+  TYN L++  GRA    +++  ++ +   GL+ +  T+ S + AY R + 
Sbjct: 478 DAGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKE 537

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
               L ++ EM + G          LLA C+D    ++   I   M
Sbjct: 538 YGRCLEIFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVRSM 583


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 3/212 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ L+ +YG  G       +  EM+A G+ PN++TYN L+    RA    +   +
Sbjct: 317 PNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAAL 376

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            K +   GL P+  TY +L+ A+ RA   E  L  + EM++     ++  YN L+ +   
Sbjct: 377 KKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGR 436

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +   D+  ++F+ M+  +NC PD  T++S++      G ++E   +F EM  AG+ P + 
Sbjct: 437 MEKLDDMMKVFKFMQ-EKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVD 495

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               LI+CYG+    D  V     L   G+ P
Sbjct: 496 TFNILIECYGRCGYVDYSVDIYKGLLRTGLQP 527



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 2/236 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN-FDGCLNVYEEMKAIGVKPN 155
           +RA   +    L++  + E  R +   ++ ++ LYG  G+ +D   ++++EMK + + P+
Sbjct: 224 SRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPD 283

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             TYN ++    +     +   +++EM + G  PN  TY +LL  YG+    ++   +  
Sbjct: 284 DYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLV 343

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM+  G+  ++  YN L+A  A  G  DEA  + + + S   C PD +T+ ++I+  +  
Sbjct: 344 EMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLC-PDEFTYCTLISAFNRA 402

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +  +A   F EM +    PN+     LI  YG+ ++ DD+++    + E   TPD
Sbjct: 403 ERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPD 458



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 134/251 (53%), Gaps = 3/251 (1%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           ++E + +D  A+++LI +   A  FD  + ++E M+  G + N +TYN +LD  G+    
Sbjct: 205 QDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDS 264

Query: 173 W-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
           W +++++++EM D  +SP+  TY +++ A  +  + ++ L +++EMKE G   +   YN 
Sbjct: 265 WDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNA 324

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           LL +    G   EA E+  +M+++    P+  T++ +I   +  G   EA A+   +L  
Sbjct: 325 LLDVYGKGGMHKEASELLVEMEAA-GISPNIVTYNELIAAYARAGLCDEAAALKKSLLSK 383

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EEL 350
           G  P+ F   +LI  + +A+R +  +     + +   TP+      L+++  +  K +++
Sbjct: 384 GLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDM 443

Query: 351 GKLVECVEKSN 361
            K+ + +++ N
Sbjct: 444 MKVFKFMQEKN 454



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 1/234 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG  + A  L     ++    D   + TLI  +  A  ++  L  + EM+     PN+
Sbjct: 365 ARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNI 424

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+D  GR ++   +  ++K M +   +P+  T+ SLL+++G      +  +V+RE
Sbjct: 425 VTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFRE 484

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G    V  +N L+      GY D + +I++ +  +   QP   TF++++   +  G
Sbjct: 485 MKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRT-GLQPTVPTFAALMASLAREG 543

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +  + E +  EM EAG + +      LI  Y  + +   + + ++ L +    P
Sbjct: 544 RWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQP 597



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 113/247 (45%), Gaps = 37/247 (14%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + F+ LI+ YG  G  D  +++Y+ +   G++P + T+  L+ ++ R  R  Q + + +E
Sbjct: 495 DTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQE 554

Query: 182 MTDNGLSPNWNTYASLLRAYGRA----------------------------------RYG 207
           M + GL  +   +A L+ +Y  +                                  + G
Sbjct: 555 MAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCG 614

Query: 208 EDTLS--VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
            D  +     ++ + G    + ++N +++MCA  G+ + A ++ E+++ ++  +PD  T+
Sbjct: 615 MDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQ-LKPDGVTY 673

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           + ++++    G   +AE + +EM  AG  PNL    +L+  Y K  R DD  R    +  
Sbjct: 674 NCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVA 733

Query: 326 LGITPDD 332
             + PD+
Sbjct: 734 ARVRPDN 740



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 2/223 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +++L+K +G  G      NV+ EMK  G  P + T+N L++  GR         IY
Sbjct: 458 DLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIY 517

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           K +   GL P   T+A+L+ +  R    +    V +EM E G+QLS   +  L+   A+ 
Sbjct: 518 KGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANS 577

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLF 298
           G   +  +  ++++ S   QP S        +  C+ G  +EA+   N++ + G  P++ 
Sbjct: 578 GQFFQLRKYIDELEKSAK-QPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIK 636

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           V  ++I    K    +  V+ L  + +  + PD     CL+++
Sbjct: 637 VFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSM 679



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 4/208 (1%)

Query: 127 LIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTD 184
            +K  G  G +   L V+E + K    K   +   ++L  +G  ++ P  ++       D
Sbjct: 147 FVKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQD 206

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT-D 243
              S +   Y SL+    RAR  ++ ++++  M+ +G + +   YN +L +    G + D
Sbjct: 207 ESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWD 266

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
               +F++MK  E   PD +T+++MIT C       EA  +F EM EAG  PN     +L
Sbjct: 267 RIQSLFQEMKDLE-ISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNAL 325

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  YGK     +    L  +   GI+P+
Sbjct: 326 LDVYGKGGMHKEASELLVEMEAAGISPN 353



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 5/162 (3%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           LYD   +     D   F+ +I +    G  +  + + EE++   +KP+ +TYN L+   G
Sbjct: 626 LYDNGHSP----DIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYG 681

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R    ++ + +  EM   G +PN  TY +LL +Y +    +D   V+ +M    ++    
Sbjct: 682 REGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNF 741

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            +NTL+   + +G   EA  + E M +   CQP   TF +++
Sbjct: 742 TFNTLVGSYSSLGLYKEALSVIEYM-TEHGCQPTQITFKALL 782



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTI--YKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
           G  P++  +N ++     AKR W  + +   +E+    L P+  TY  L+  YGR     
Sbjct: 630 GHSPDIKVFNAMISMC--AKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYY 687

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
               V  EM+  G   ++  YNTLL      G  D+A  +F DM ++   +PD++TF+++
Sbjct: 688 KAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAA-RVRPDNFTFNTL 746

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           +   S  G   EA ++   M E G +P      +L+  Y +
Sbjct: 747 VGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNR 787



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G +E A  L +  R  + + D   ++ L+ +YG  G +     V  EM+  G  PN+
Sbjct: 646 AKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNL 705

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITYN LL +  +  R      ++ +M    + P+  T+ +L+ +Y      ++ LSV   
Sbjct: 706 ITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEY 765

Query: 217 MKEKGMQLSVTLYNTLL 233
           M E G Q +   +  LL
Sbjct: 766 MTEHGCQPTQITFKALL 782



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TL+  Y   G  D    V+ +M A  V+P+  T+N L+ +        +  ++
Sbjct: 703 PNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSV 762

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGR 203
            + MT++G  P   T+ +LL  Y R
Sbjct: 763 IEYMTEHGCQPTQITFKALLDGYNR 787


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 117/234 (50%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  + ++ + E+ +    AF  +I+ Y  AG+    L+  + M+  G  P ++
Sbjct: 520 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 579

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + R  +  +  ++  +M+  G++PN +TY  ++R Y  +         + ++
Sbjct: 580 TYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKI 639

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G++L V +Y TLL  C   G    A  +  +M S +    +++ ++ +I   + RG 
Sbjct: 640 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREM-SFQKIPRNTFIYNILIDGWARRGD 698

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EAE +  +M E G  PN+   TS I    KA       + +  + ++G+ P+
Sbjct: 699 VWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPN 752



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 107/235 (45%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN+E A  L      +      + + +++  Y    N + CL V+E +K  G KP++I
Sbjct: 380 QSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSII 439

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  LL+   +  +  +  +I KEM   G+  N  TY+ L+  +       +  +++ EM
Sbjct: 440 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 499

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+Q    +YN L+     +G  D A  I E M+  E  QP +  F  +I   +  G 
Sbjct: 500 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ-KERMQPSNRAFRPIIEGYAVAGD 558

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A    + M  +G  P +    +LI    +  +    V  L+++   GITP++
Sbjct: 559 MKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 613



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G++  AF  + + +    ++D   + TL++    +G     L V  EM    +  N   
Sbjct: 626 SGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFI 685

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+D   R    W+ + + K+M ++G+ PN +TY S + A  +A   +    V  EM 
Sbjct: 686 YNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMV 745

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G++ +V  Y TL+   A V   D A + FE+MK +   +PD  ++  ++T    R  V
Sbjct: 746 DVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA-GLKPDEASYHCLVTSLLSRATV 804

Query: 279 SEA 281
            E 
Sbjct: 805 MEG 807



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 44/278 (15%)

Query: 95  YDTRAGNVEMAFGLYD--RARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAI 150
           Y  + G+   A   ++  RAR     I+PNAF  ++L+  Y  A +  G L+  EEMK+ 
Sbjct: 272 YYAKRGDKHHARATFENMRARG----IEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE 327

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE----------------------------- 181
           G++  ++TY+ L+    +         ++KE                             
Sbjct: 328 GLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERA 387

Query: 182 ------MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
                 M ++G+    + Y S++  Y   +     L V+  +KE G + S+  Y  LL +
Sbjct: 388 EELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNL 447

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              +G   +A  I ++M+S    + ++ T+S +I         + A A+F EML +G +P
Sbjct: 448 YVKIGKVAKALSISKEMESC-GIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQP 506

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           +  +   LI+ + K    D  +  L ++ +  + P +R
Sbjct: 507 DRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNR 544



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 13/293 (4%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           N+   ++ +E +     KP+   +  ++    +       +  ++ M   G+ PN   + 
Sbjct: 247 NWQAVVSAFERIP----KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFT 302

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           SL+ AY  AR     LS   EMK +G++L++  Y+ L++  A +  +  A  +F++ K+ 
Sbjct: 303 SLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTK 362

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
            +   +   +S++I      G +  AE +  EM E G +  + V  S++  Y   Q  + 
Sbjct: 363 LSSL-NGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENK 421

Query: 316 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKE----ELGKLVEC--VEKSNSKLGYVVK 369
            +    RL E G  P     GCLLN+  +  K      + K +E   ++ +N     ++ 
Sbjct: 422 CLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLIN 481

Query: 370 LLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
             +   D    F      L + +  D  +A  N LI+    +  ++ A  +LE
Sbjct: 482 GFIHLHDFANAFAIFEEMLRSGLQPD--RAIYNLLIEAFCKMGNMDRAICILE 532


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 118/234 (50%), Gaps = 2/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG VE A  +++   +E+   D  AF+ LI  +G     D    +Y+ M+ + ++P+ I
Sbjct: 470 RAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRI 529

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           T+N L+   G+AK   +      +MT+  GL+P+ ++Y +L+ A G++        V+ E
Sbjct: 530 TFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEE 589

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+ KG++     +N L+   +       +F+I  D+   E   PD++T +++I+ C+ R 
Sbjct: 590 MRTKGIRPCTVTFNALIYGASRSHDLAASFKIV-DLMLQEGLNPDAYTMNTLISACNRRQ 648

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +S A  +  +  + G  P+     + I   GK   ++ +   L+ +   GI+P
Sbjct: 649 DLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISP 702



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 120/252 (47%), Gaps = 10/252 (3%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  L+   +    + +   +S+LI  +  AG  +  L ++EEM    + P++  +N L
Sbjct: 440 ERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNAL 499

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-KG 221
           +D  G+ ++  +   IY  M    + P+  T+ +L+ A G+A+     L    +M E  G
Sbjct: 500 IDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYG 559

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +      YN L+  C   G   +A+E+FE+M++ +  +P + TF+++I   S    ++ +
Sbjct: 560 LTPDRHSYNALIDACGKSGDFTKAYEVFEEMRT-KGIRPCTVTFNALIYGASRSHDLAAS 618

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             + + ML+ G  P+ + + +LI    + Q        L +  +LG+ PD        NV
Sbjct: 619 FKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPD--------NV 670

Query: 342 MTQTPKEELGKL 353
              T  + +GKL
Sbjct: 671 TFNTFIDAVGKL 682



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 8/243 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI  +      +  L +++EMK   VKPN   Y++L+    RA    +   I+
Sbjct: 422 DVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIF 481

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EMT   + P+   + +L+  +G+ R  +    +Y  M++  +Q     +N L++     
Sbjct: 482 EEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKA 541

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
             +  A E   DM       PD  +++++I  C   G  ++A  +F EM   G  P    
Sbjct: 542 KNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVT 601

Query: 300 LTSLIQCYGKAQRTDDVV---RALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
             +LI  YG A R+ D+    + ++ + + G+ PD      L++   +  +++L    E 
Sbjct: 602 FNALI--YG-ASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNR--RQDLSTAFEV 656

Query: 357 VEK 359
           +EK
Sbjct: 657 LEK 659



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 1/235 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D ++++ LI   G +G+F     V+EEM+  G++P  +T+N L+    R+        I 
Sbjct: 563 DRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIV 622

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   GL+P+  T  +L+ A  R +       V  + K+ G+      +NT +     +
Sbjct: 623 DLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKL 682

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
             +++ FE+  +M+S     P   T ++++  C  RGK+   E  F+   E   EP+   
Sbjct: 683 DSSEKMFELLSEMES-RGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKRLEPDSVT 741

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
            + LI+ Y      D  V A +      +  +      LL  + +  + E+ KL+
Sbjct: 742 FSLLIENYVSHHLLDKAVIAYHNCKRQQLELNSNVVMHLLESLIRKDEIEVAKLI 796



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 155/379 (40%), Gaps = 70/379 (18%)

Query: 109 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           YD  +   W    +A   L+K     G    CL+++  M +  VK ++ +++  +  +GR
Sbjct: 272 YDDRQTRNWNYTMDA---LLK----GGKARECLDMFLSMPSNEVKRDVASWSIYITALGR 324

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY-------------- 214
            +R  + +     M +  + PN  TY++L+   G+       LS +              
Sbjct: 325 LERYSEAERSLIWMREEHIQPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTV 384

Query: 215 ---------------------------REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
                                      REM  KG    V  Y TL+   +     + A +
Sbjct: 385 TYNAVIKIVSRCKRNDCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALK 444

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           +F++MK + N +P+++ +SS+I+     G V  A A+F EM      P++F   +LI  +
Sbjct: 445 LFQEMKEA-NVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGF 503

Query: 308 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-----EELGKLVECVEKSNS 362
           GK ++ D      +R+ +L I PD      L++   +        E +G + E    +  
Sbjct: 504 GKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPD 563

Query: 363 KLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYC--NCLI-------DLCVNLN 412
           +  Y    L++     GDF K A E+F  + +K ++      N LI       DL  +  
Sbjct: 564 RHSY--NALIDACGKSGDFTK-AYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFK 620

Query: 413 LLENACKLLELGLTLEVYT 431
           +++    +L+ GL  + YT
Sbjct: 621 IVD---LMLQEGLNPDAYT 636



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 11/177 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD--GCLNVYEEMKAIGVKPN 155
           ++G+   A+ +++  R +  R     F+ LI  YG + + D      + + M   G+ P+
Sbjct: 576 KSGDFTKAYEVFEEMRTKGIRPCTVTFNALI--YGASRSHDLAASFKIVDLMLQEGLNPD 633

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             T N L+    R +       + ++    G+ P+  T+ + + A G+    E    +  
Sbjct: 634 AYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLS 693

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTD---EAFEIFEDMKSSENCQPDSWTFSSMI 269
           EM+ +G+  S    NT++  C   G  D     F +F + +     +PDS TFS +I
Sbjct: 694 EMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKR----LEPDSVTFSLLI 746


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 117/234 (50%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  + ++ + E+ +    AF  +I+ Y  AG+    L+  + M+  G  P ++
Sbjct: 499 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 558

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + R  +  +  ++  +M+  G++PN +TY  ++R Y  +         + ++
Sbjct: 559 TYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKI 618

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G++L V +Y TLL  C   G    A  +  +M S +    +++ ++ +I   + RG 
Sbjct: 619 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREM-SFQKIPRNTFIYNILIDGWARRGD 677

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EAE +  +M E G  PN+   TS I    KA       + +  + ++G+ P+
Sbjct: 678 VWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPN 731



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 107/235 (45%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN+E A  L      +      + + +++  Y    N + CL V+E +K  G KP++I
Sbjct: 359 QSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSII 418

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  LL+   +  +  +  +I KEM   G+  N  TY+ L+  +       +  +++ EM
Sbjct: 419 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 478

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+Q    +YN L+     +G  D A  I E M+  E  QP +  F  +I   +  G 
Sbjct: 479 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ-KERMQPSNRAFRPIIEGYAVAGD 537

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A    + M  +G  P +    +LI    +  +    V  L+++   GITP++
Sbjct: 538 MKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 592



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G++  AF  + + +    ++D   + TL++    +G     L V  EM    +  N   
Sbjct: 605 SGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFI 664

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+D   R    W+ + + K+M ++G+ PN +TY S + A  +A   +    V  EM 
Sbjct: 665 YNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMV 724

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G++ +V  Y TL+   A V   D A + FE+MK +   +PD  ++  ++T    R  V
Sbjct: 725 DVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA-GLKPDEASYHCLVTSLLSRATV 783

Query: 279 SEA 281
            E 
Sbjct: 784 MEG 786



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 13/293 (4%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           N+   ++ +E +     KP+   +  ++    +       +  ++ M   G+ PN   + 
Sbjct: 226 NWQAVVSAFERIP----KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFT 281

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           SL+ AY  AR     LS   EMK +G++L++  Y+ L++  A +  +  A  +F++ K+ 
Sbjct: 282 SLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTK 341

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
            +   +   +S++I      G +  AE +  EM E G +  + V  S++  Y   Q  + 
Sbjct: 342 LSSL-NGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENK 400

Query: 316 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKE----ELGKLVEC--VEKSNSKLGYVVK 369
            +    RL E G  P     GCLLN+  +  K      + K +E   ++ +N     ++ 
Sbjct: 401 CLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLIN 460

Query: 370 LLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
             +   D    F      L + +  D  +A  N LI+    +  ++ A  +LE
Sbjct: 461 GFIHLHDFANAFAIFEEMLRSGLQPD--RAIYNLLIEAFCKMGNMDRAICILE 511



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 44/278 (15%)

Query: 95  YDTRAGNVEMAFGLYD--RARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAI 150
           Y  + G+   A   ++  RAR     I+PNAF  ++L+  Y  A +  G L+  EEMK+ 
Sbjct: 251 YYAKRGDKHHARATFENMRARG----IEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE 306

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE----------------------------- 181
           G++  ++TY+ L+    +         ++KE                             
Sbjct: 307 GLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERA 366

Query: 182 ------MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
                 M ++G+    + Y S++  Y   +     L V+  +KE G + S+  Y  LL +
Sbjct: 367 EELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNL 426

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              +G   +A  I ++M+S    + ++ T+S +I         + A A+F EML +G +P
Sbjct: 427 YVKIGKVAKALSISKEMESC-GIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQP 485

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           +  +   LI+ + K    D  +  L ++ +  + P +R
Sbjct: 486 DRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNR 523


>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
 gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
          Length = 785

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +Y+        +D + +  +I     +G  D    +++EMK    +P++  +++L+D
Sbjct: 246 AFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVD 305

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +MG+A R      +Y EM   GL P+   Y SL+ +Y +A   +  L ++ EMK  G + 
Sbjct: 306 SMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGFRP 365

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +  LY  ++   A  G  D A  IF DM+ +    P   T+SS++ + +  G+V  A  +
Sbjct: 366 NFGLYTLIIESHAKSGKLDIAMSIFRDMEKA-GFLPTPSTYSSLLEMHAASGQVDAAMKL 424

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +N M  AG  P L   T+L+      +  D   + L  +  +G + D
Sbjct: 425 YNSMTNAGLRPGLSTYTALLTLLAHKKLVDVAAKILLEMKAMGFSVD 471



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 206/457 (45%), Gaps = 47/457 (10%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G ++ AF L+   +   +R     FS+L+   G AG  +  + VY EM+ +G++P+ 
Sbjct: 273 AKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVYMEMQGLGLRPSA 332

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I Y +L+++  +A +      ++ EM   G  PN+  Y  ++ ++ ++   +  +S++R+
Sbjct: 333 IMYVSLIESYTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRD 392

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G   + + Y++LL M A  G  D A +++  M ++   +P   T+++++T+ + + 
Sbjct: 393 MEKAGFLPTPSTYSSLLEMHAASGQVDAAMKLYNSM-TNAGLRPGLSTYTALLTLLAHKK 451

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD---- 332
            V  A  +  EM   GF  ++   + ++  Y K    D  +R L  +   GI  ++    
Sbjct: 452 LVDVAAKILLEMKAMGFSVDVSA-SDVLMVYIKDGSVDLSLRWLRFMSSSGIRTNNFIIR 510

Query: 333 -RFCGCLLNVMTQTPKEELGKLVECVEKSN-----SKLGYVVKLLLEEQD---------- 376
             F  C+ N + ++ K  L   V    K +     S L Y+V+   E+ +          
Sbjct: 511 QLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAYLVRCQEEQNERHLMAILSAT 570

Query: 377 -------IEGDF-----KKEAT-----ELFNSISKDVK----KAYCNCLIDLCVNLNLLE 415
                  + G F     +K+       E F  I  +++    K + N L++  V +  + 
Sbjct: 571 RHKAHAFMCGLFTGPEQRKQPVLSFVREFFQGIDYELEEGAAKYFVNVLLNYLVLMGQIN 630

Query: 416 NACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 474
            A  + ++    +++   I       WSL +++LS+GAAL A+   ++   K +      
Sbjct: 631 RARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALVAVVHTLHRFRKRMLYYGVI 690

Query: 475 PPLLGINTGHGKHKYSDKGLASV---FESHLKELNAP 508
           P  + + TG        + L+SV   FE     L AP
Sbjct: 691 PRRIKLVTGPTLRIVVAQMLSSVESPFEVSKVVLRAP 727



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 131/265 (49%), Gaps = 7/265 (2%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  +A  +E++F  + + ++   +ID   ++ L+KL+   G       +YE M+A     
Sbjct: 201 YLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLPYKAFEIYETMEAAHCSL 260

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ TY  ++ ++ ++ R      +++EM +    P+   ++SL+ + G+A   E ++ VY
Sbjct: 261 DVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVY 320

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM+  G++ S  +Y +L+      G  D A  ++++MK +   +P+   ++ +I   + 
Sbjct: 321 MEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIA-GFRPNFGLYTLIIESHAK 379

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            GK+  A ++F +M +AGF P     +SL++ +  + + D  ++  N +   G+ P    
Sbjct: 380 SGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAAMKLYNSMTNAGLRPGLST 439

Query: 335 CGCLLNVMTQTPKEELGKLVECVEK 359
              LL ++         KLV+   K
Sbjct: 440 YTALLTLLAHK------KLVDVAAK 458



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 105/230 (45%), Gaps = 6/230 (2%)

Query: 106 FGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP--NMITYNN 161
             L+  A+ + W + PN   +  L      + +FDG  ++++EM    +K       YN 
Sbjct: 139 LSLFKWAKRQTWYV-PNDECYVMLFDGLNQSRDFDGIQSLFDEMVCDSIKSATQFSAYNR 197

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +L  + +A++       +K++ D+G   +  TY  L++ +           +Y  M+   
Sbjct: 198 VLKYLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLPYKAFEIYETMEAAH 257

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             L V+ Y  ++   A  G  D AF++F++MK   N +P    FSS++      G++  +
Sbjct: 258 CSLDVSTYELMIPSLAKSGRLDAAFKLFQEMK-ERNFRPSLGIFSSLVDSMGKAGRLETS 316

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             ++ EM   G  P+  +  SLI+ Y KA + D  +R  + +   G  P+
Sbjct: 317 MKVYMEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGFRPN 366


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 2/246 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +  A G+Y+   +     D   +STLI  +  A   D    ++E M + G +PN +
Sbjct: 204 RKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAV 263

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL  + +  +P +   ++++M + G  P+  TY +LL  +      E  + V+ EM
Sbjct: 264 TYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEM 323

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG    V  YN LL      G   EA ++F+ M S E C+PD+ + + MI   S   +
Sbjct: 324 VSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE-CKPDTVSHNIMIDGLSKAKR 382

Query: 278 VSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           + +A  +F  M  + G  P+L    SLI      QR  + ++    +  L ++PD     
Sbjct: 383 LDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFN 442

Query: 337 CLLNVM 342
            LL  M
Sbjct: 443 VLLEAM 448



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 110/235 (46%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +A  V  AF ++    +E+  + D  ++S LI  +           +Y++M  +   PN+
Sbjct: 133 KAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNV 192

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN  L+ + R  R    + +Y+EM   G SP+  TY++L+  +  AR  +    ++  
Sbjct: 193 TTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEA 252

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G + +   YN LL         DEA E+F  M     C PD  T+++++      G
Sbjct: 253 MISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM-VERGCDPDKVTYTTLLYGFCNVG 311

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           K+ +A  +F+EM+  G +P++     L++ + +A +  +  +    +      PD
Sbjct: 312 KIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPD 366



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 114/238 (47%), Gaps = 9/238 (3%)

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM--T 183
           ++I+    AG  D  L++ E M   G  P+M T++ L++ + +A +  + +   + M  T
Sbjct: 54  SVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRT 113

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYT 242
            +  + +  +Y SLL +  +A+      +++  M  E+ +   V  Y+ L+     +   
Sbjct: 114 ISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDEL 173

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A ++++ M    NC P+  T+++ +     +G++++A+ ++ EM+ AG  P++   ++
Sbjct: 174 GRAEKLYKQMIDL-NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYST 232

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-----EELGKLVE 355
           LI  +  A++ D        +   G  P+     CLL+ + +  K     E   K+VE
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE 290


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 117/234 (50%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  + ++ + E+ +    AF  +I+ Y  AG+    L+  + M+  G  P ++
Sbjct: 521 KMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVM 580

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + R  +  +  ++  +M+  G++PN +TY  ++R Y  +         + ++
Sbjct: 581 TYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKI 640

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G++L V +Y TLL  C   G    A  +  +M S +    +++ ++ +I   + RG 
Sbjct: 641 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREM-SFQKIPRNTFIYNILIDGWARRGD 699

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EAE +  +M E G  PN+   TS I    KA       + +  + ++G+ P+
Sbjct: 700 VWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPN 753



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 107/235 (45%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN+E A  L      +      + + +++  Y    N + CL V+E +K  G KP++I
Sbjct: 381 QSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSII 440

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  LL+   +  +  +  +I KEM   G+  N  TY+ L+  +       +  +++ EM
Sbjct: 441 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 500

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+Q    +YN L+     +G  D A  I E M+  E  QP +  F  +I   +  G 
Sbjct: 501 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQ-KERMQPSNRAFRPIIEGYAVAGD 559

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A    + M  +G  P +    +LI    +  +    V  L+++   GITP++
Sbjct: 560 MKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 614



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 1/183 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G++  AF  + + +    ++D   + TL++    +G     L V  EM    +  N   
Sbjct: 627 SGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFI 686

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+D   R    W+ + + K+M ++G+ PN +TY S + A  +A   +    V  EM 
Sbjct: 687 YNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMV 746

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G++ +V  Y TL+   A V   D A + FE+MK +   +PD  ++  ++T    R  V
Sbjct: 747 DVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLA-GLKPDEASYHCLVTSLLSRATV 805

Query: 279 SEA 281
            E 
Sbjct: 806 MEG 808



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 13/293 (4%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           N+   ++ +E +     KP+   +  ++    +       +  ++ M   G+ PN   + 
Sbjct: 248 NWQAVVSAFERIP----KPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFT 303

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           SL+ AY  AR     LS   EMK +G++L++  Y+ L++  A +  +  A  +F++ K+ 
Sbjct: 304 SLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTK 363

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
            +   +   +S++I      G +  AE +  EM E G +  + V  S++  Y   Q  + 
Sbjct: 364 LSSL-NGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENK 422

Query: 316 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKE----ELGKLVEC--VEKSNSKLGYVVK 369
            +    RL E G  P     GCLLN+  +  K      + K +E   ++ +N     ++ 
Sbjct: 423 CLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLIN 482

Query: 370 LLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
             +   D    F      L + +  D  +A  N LI+    +  ++ A  +LE
Sbjct: 483 GFIHLHDFANAFAIFEEMLRSGLQPD--RAIYNLLIEAFCKMGNMDRAICILE 533



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 44/278 (15%)

Query: 95  YDTRAGNVEMAFGLYD--RARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAI 150
           Y  + G+   A   ++  RAR     I+PNAF  ++L+  Y  A +  G L+  EEMK+ 
Sbjct: 273 YYAKRGDKHHARATFENMRARG----IEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE 328

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE----------------------------- 181
           G++  ++TY+ L+    +         ++KE                             
Sbjct: 329 GLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERA 388

Query: 182 ------MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
                 M ++G+    + Y S++  Y   +     L V+  +KE G + S+  Y  LL +
Sbjct: 389 EELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNL 448

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              +G   +A  I ++M+S    + ++ T+S +I         + A A+F EML +G +P
Sbjct: 449 YVKIGKVAKALSISKEMESC-GIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQP 507

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           +  +   LI+ + K    D  +  L ++ +  + P +R
Sbjct: 508 DRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNR 545


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 163/357 (45%), Gaps = 17/357 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G + +A GL++RAR E +    ++FS +I  +G  G F   ++++  M + GV PN+I
Sbjct: 225 RLGEINLALGLFERARLEGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVI 284

Query: 158 TYNNLLDTMGRAKRPWQVKT-IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN+++D   + +  + V    Y EM  NGL P+  TY SLL         E    +  E
Sbjct: 285 TYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSE 344

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  + +   V  YNT L      G  D A  +FE+M SS+   P+  T+S+M+   +   
Sbjct: 345 MDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEM-SSKRVWPNVVTYSAMMDGYAKAN 403

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + +A  ++ EM       +     +L+  Y K    D+ +     +   GI  D     
Sbjct: 404 LLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYN 463

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK- 394
            LL+   +    +E+ +L E ++  N     +    + +   +G+  +EA +++      
Sbjct: 464 ALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMA 523

Query: 395 --DVKKAYCNCLID-LCVNLNLLENACKLL----ELGLTLEVYT-----DIQSRSPT 439
             ++   + + +ID LC N  L+E++  LL    E G+   V T     D   +SPT
Sbjct: 524 RLEIDVVFYSAIIDTLCKN-GLMESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPT 579



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 10/245 (4%)

Query: 118 RIDPNAF-STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           R+D     S +I   G  G  +  L ++E  +  G    + +++ ++   GR  R     
Sbjct: 209 RVDKGKLVSAMIGTLGRLGEINLALGLFERARLEGYGSTVHSFSAMISAFGRNGRFPDAV 268

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGED-TLSVYREMKEKGMQLSVTLYNTLLAM 235
            +++ M+  G+ PN  TY S++ A  +     D  +  Y EM   G+      YN+LL++
Sbjct: 269 DLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSV 328

Query: 236 CADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
           CA  G  + A ++  +M     C  PD +T+++ +      G++  A  +F EM      
Sbjct: 329 CASKGMWEMAQKLLSEM--DHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVW 386

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           PN+   ++++  Y KA   +D +     +    +  D      L+ +      E+LG L 
Sbjct: 387 PNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIY-----EKLGNLD 441

Query: 355 ECVEK 359
           E +EK
Sbjct: 442 EAIEK 446


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 131/261 (50%), Gaps = 3/261 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A+ LY++  +     +   +++LIK +   G  +    +++EM   G  P++ 
Sbjct: 489 KQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLR 548

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + +++E+   G  P+  +Y+ L+    +A +  +T  ++  M
Sbjct: 549 LLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAM 608

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G  L    YNT +      G  ++A+++ E+MK+    QP   T+ S+I   +   +
Sbjct: 609 KEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGR-QPTVVTYGSVIDGLAKIDR 667

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F E    G E N+ + +SLI  +GK  R D+    +  L + G+TP+     C
Sbjct: 668 LDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 727

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           LL+ + +   EE+ + + C +
Sbjct: 728 LLDALVKA--EEINEALVCFQ 746



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG     + L+   + +   +D +A++T I  +  +G  +    + EEMK  G +P +
Sbjct: 593 VKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTV 652

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++D + +  R  +   +++E   NGL  N   Y+SL+  +G+    ++   +  E
Sbjct: 653 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEE 712

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           + +KG+  +V  +N LL         +EA   F++MK+ +   P+  T+S +I  +C  R
Sbjct: 713 LMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKG-TPNHITYSILINGLCRVR 771

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + EM + G +PN    T++I    KA    +      R    G  PD
Sbjct: 772 -KFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPD 826



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 143/316 (45%), Gaps = 10/316 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G ++ A  L D  ++     D   ++  I  +G AG  D     + E+K+ G+ P+ 
Sbjct: 244 AREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDD 303

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++  + +  R  +   I+++M  N   P    Y +++  YG A   ++  S+   
Sbjct: 304 VTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLER 363

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            K +G   SV  YN +L      G   EA   FE+MK  ++  P+  T++ +I +    G
Sbjct: 364 QKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMK--KDAAPNLSTYNVLIDMLCKAG 421

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 335
           +V  A  + + M EAG  PN+  +  +I    KA++ D+       +     +PD+  FC
Sbjct: 422 EVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFC 481

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI--- 392
             +  +  Q   ++  +L E +  S+     VV   L +   +   K++  ++F  +   
Sbjct: 482 SLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHR 541

Query: 393 --SKDVK--KAYCNCL 404
             S D++   AY +C+
Sbjct: 542 GCSPDLRLLNAYMDCV 557



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 112/241 (46%), Gaps = 10/241 (4%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++   L+ + +   + +  + F+T+I+++   G  D  L++ +EMK+  +  +++ YN  
Sbjct: 215 DIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVC 274

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +D  G+A +       + E+  +GL P+  TY S++    +    ++ + ++ +M++   
Sbjct: 275 IDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRN 334

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
                 YNT++      G  DEA+ + E  K +  C P    ++ ++T    +G++ EA 
Sbjct: 335 VPCAYAYNTMIMGYGSAGKFDEAYSLLERQK-ARGCIPSVIAYNCILTCLGKKGRLGEAL 393

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRF 334
             F EM +    PNL     LI    KA   +   +  + + E G+ P+        DR 
Sbjct: 394 RTFEEMKKDA-APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRL 452

Query: 335 C 335
           C
Sbjct: 453 C 453



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 95/183 (51%), Gaps = 1/183 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A++    ++   +S+LI  +G  G  D    + EE+   G+ PN+ T+N LLD
Sbjct: 671 AYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 730

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M +   +PN  TY+ L+    R R        ++EM+++G++ 
Sbjct: 731 ALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKP 790

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y T++A  A  G   EA  +FE  K++    PDS +++++I   S   +  EA  +
Sbjct: 791 NTITYTTMIAGLAKAGNIAEASSLFERFKANGGV-PDSASYNAIIEGLSYSRRAMEAYKI 849

Query: 285 FNE 287
           F E
Sbjct: 850 FEE 852



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 109/255 (42%), Gaps = 13/255 (5%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G S K+ I +     +++KL+E             F L    R  K+R   +A++TLI  
Sbjct: 160 GPSTKTCIELILSCIKSNKLRE------------GFDLIQCMRKFKFRPAFSAYTTLIGA 207

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
             +    D  L ++ +M+ +G + ++  +  ++    R  R     ++  EM  N L  +
Sbjct: 208 LSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHAD 267

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
              Y   +  +G+A   +     + E+K  G+      Y +++ +       DEA EIFE
Sbjct: 268 IVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFE 327

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            M+ + N  P ++ +++MI      GK  EA ++       G  P++     ++ C GK 
Sbjct: 328 QMEQNRNV-PCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKK 386

Query: 311 QRTDDVVRALNRLPE 325
            R  + +R    + +
Sbjct: 387 GRLGEALRTFEEMKK 401



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN ++   L+     A   +  L  ++ MK +   PN ITY+ L++ + R ++  +  
Sbjct: 718 LTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAF 777

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             ++EM   GL PN  TY +++    +A    +  S++   K  G       YN ++   
Sbjct: 778 VFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGL 837

Query: 237 ADVGYTDEAFEIFEDMK 253
           +      EA++IFE+ +
Sbjct: 838 SYSRRAMEAYKIFEETR 854



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/128 (20%), Positives = 57/128 (44%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A  +  A   +   +N K   +   +S LI        F+     ++EM+  G+KPN 
Sbjct: 733 VKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNT 792

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITY  ++  + +A    +  ++++    NG  P+  +Y +++     +R   +   ++ E
Sbjct: 793 ITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEE 852

Query: 217 MKEKGMQL 224
            + KG  +
Sbjct: 853 TRMKGCNI 860


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 34/276 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  +++R + E+ +     F  +I+ +  AG+     +  + M+  G  P ++
Sbjct: 508 KMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVM 567

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + R  +  +  ++  +M+  G++PN +TY  ++R Y  +         + ++
Sbjct: 568 TYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKI 627

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--------NCQPDSW------ 263
           KE G++L V +Y TLL  C   G    A  +  +M   +        N   D W      
Sbjct: 628 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 687

Query: 264 --------------------TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                               TF+S I  C   G +  AE +  EM + G +PN+   T+L
Sbjct: 688 WEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTL 747

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           I+ + +    D  ++    +   G+ PD+    CL+
Sbjct: 748 IKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLV 783



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 108/235 (45%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN++ A  L      +      + + +++  Y    +   CL V+E +K  G KP +I
Sbjct: 368 QSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTII 427

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L++   +  +  +   I KEM  +G+  N  TY+ L+  +       +  S++ +M
Sbjct: 428 SYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDM 487

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+Q    +YN L+     +G  D A  IFE M+  E  QP + TF  +I   +  G 
Sbjct: 488 IKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQ-KERMQPSNRTFRPIIEGFAVAGD 546

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A    + M  +G  P +    +LI    +  + +  V  L+++   GI P++
Sbjct: 547 MKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNE 601



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 8/232 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G++  AF  + + +    ++D   + TL++    +G     L V  EM    +  N   
Sbjct: 614 SGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFI 673

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+D   R    W+   + K+M ++G+ PN +T+ S + A  +A   +   +V +EM 
Sbjct: 674 YNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMA 733

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G++ +V  + TL+   A V   D A + FE+MKS+   +PD   +  ++T    R  V
Sbjct: 734 DVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSA-GLKPDEAAYHCLVTSLLSRATV 792

Query: 279 SEAE------AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV-RALNRL 323
            E        ++  EM E     +L       +   K +RT   +  AL R+
Sbjct: 793 MEGSTYTGIFSVCREMFENDLTVDLRTAVHWSKWLHKIERTGGALTEALQRI 844



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 123/278 (44%), Gaps = 44/278 (15%)

Query: 95  YDTRAGNVEMAFGLYD--RARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAI 150
           Y  + G+   A   ++  RAR     I+PNAF  ++L+  Y  AG+  G L+  EEMK+ 
Sbjct: 260 YYAKRGDKHHARATFENMRARG----IEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSE 315

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE----------------------------- 181
           G++  ++TY+ L+   G+         ++KE                             
Sbjct: 316 GIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRA 375

Query: 182 ------MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
                 M ++G+    + Y S++  Y   +  +  L V+  +KE G + ++  Y  L+ +
Sbjct: 376 EELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINL 435

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              VG   +A  I ++M+ S   + ++ T+S +I         + A ++F +M+++G +P
Sbjct: 436 YVKVGKVPKAIAISKEME-SHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQP 494

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           +  +   L++ + K    D  +R   R+ +  + P +R
Sbjct: 495 DRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNR 532



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 1/217 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F  ++  Y   G+       +E M+A G++PN   + +L+     A       +  +EM 
Sbjct: 254 FGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMK 313

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+     TY+ L+  YG+    +   ++++E K K   L+  +Y+ ++      G  D
Sbjct: 314 SEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMD 373

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E+  +M+      P    + SM+   +      +   +F  + E GF+P +     L
Sbjct: 374 RAEELVREMEEDGIDAPID-VYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCL 432

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           I  Y K  +    +     +   GI  +++    L+N
Sbjct: 433 INLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLIN 469



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 29/70 (41%)

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           +P    F  M+   + RG    A A F  M   G EPN FV TSL+  Y  A      + 
Sbjct: 248 KPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALS 307

Query: 319 ALNRLPELGI 328
            +  +   GI
Sbjct: 308 CVEEMKSEGI 317


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 1/216 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  +Y R + E+ R +   ++ +I +YG A      L V+ EMK++G KPN+ TY  L
Sbjct: 259 EKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTAL 318

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++   R     + + +++EM   G  P+   Y +L+ AY RA   +    ++  M+  G 
Sbjct: 319 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGC 378

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +     YN L+      G   EA   F+++K  +  +P   +   +++  +  G V+  E
Sbjct: 379 EPDRASYNILVDAFGRAGLHQEAEAAFQELK-QQGMRPTMKSHMLLLSAHARSGNVARCE 437

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            +  ++ ++G  P+ F L +++  YG+A R DD+ R
Sbjct: 438 EVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMER 473



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 2/226 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           + VY+ MK    + N  TY  +++  G+A +P     +++EM   G  PN  TY +L+ A
Sbjct: 262 VEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNA 321

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           + R    E    V+ EM++ G +  V  YN L+   +  G    A EIF  M+    C+P
Sbjct: 322 FAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHM-GCEP 380

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  +++ ++      G   EAEA F E+ + G  P +     L+  + ++         +
Sbjct: 381 DRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVM 440

Query: 321 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 365
            +L + G+ PD      +LN   +  + +++ +L   +E+ +  + 
Sbjct: 441 AQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIA 486



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 1/209 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L++ Y  +G       V  EM+  G+ P    YN  LD + +A+   +   +Y+ 
Sbjct: 208 DTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQR 267

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M       N  TY  ++  YG+A     +L V+REMK  G + ++  Y  L+   A  G 
Sbjct: 268 MKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGL 327

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A E+FE+M+ + + +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 328 CEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYN 386

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
            L+  +G+A    +   A   L + G+ P
Sbjct: 387 ILVDAFGRAGLHQEAEAAFQELKQQGMRP 415



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 114/272 (41%), Gaps = 4/272 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G  E A  +++  +      D  A++ L++ Y  AG   G   ++  M+ +G +P+ 
Sbjct: 323 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 382

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN L+D  GRA    + +  ++E+   G+ P   ++  LL A+ R+        V  +
Sbjct: 383 ASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQ 442

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC---QPDSWTFSSMITICS 273
           + + G++      N +L      G  D+   +F  M+  +      PD+ T++ M+    
Sbjct: 443 LHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYG 502

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G +   EA F  +   G   ++   TS I  Y + +     +R    + + G  PD  
Sbjct: 503 RAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAG 562

Query: 334 FCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 364
               LL   +   + E++  +V  + K    L
Sbjct: 563 TAKVLLAACSDERQVEQVKAIVRSMHKDAKTL 594



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 1/219 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R   +R D   ++ LI  YG           Y  +      P   TY  LL     + + 
Sbjct: 164 RRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQL 223

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + + +  EM  NG+ P    Y + L    +AR  E  + VY+ MK++  + +   Y  +
Sbjct: 224 HRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLM 283

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           + +         +  +F +MKS   C+P+  T+++++   +  G   +AE +F EM +AG
Sbjct: 284 INVYGKANQPMSSLRVFREMKSV-GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAG 342

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EP+++   +L++ Y +A          + +  +G  PD
Sbjct: 343 HEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPD 381



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 4/163 (2%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK----A 149
           S   R+GNV     +  +      R D  A + ++  YG AG  D    ++  M+    A
Sbjct: 425 SAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGA 484

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           I   P+  TYN +++  GRA    +++  ++ +   GL+ +  T+ S + AY R +    
Sbjct: 485 IAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQ 544

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            L V+ EM + G          LLA C+D    ++   I   M
Sbjct: 545 CLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVKAIVRSM 587


>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Vitis vinifera]
          Length = 844

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +Y+        +D + +  +I     +G  D    +++EMK   ++P+ + + +L+D
Sbjct: 303 AFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVD 362

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +MG+A R      +Y EM   GL P+   Y SL+ ++ +A   E  L ++ EMK+ G + 
Sbjct: 363 SMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRP 422

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +  LY  ++   A  G  + A  +F DM+ +    P   T+S ++ + S  G+V  A  +
Sbjct: 423 NYGLYTMVVESHAKSGKLETAMSVFSDMEKA-GFLPTPSTYSCLLEMHSASGQVDSAMKL 481

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +N M  AG  P L   T+L+      +  D   + L  +  +G + D
Sbjct: 482 YNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVD 528



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 183/405 (45%), Gaps = 48/405 (11%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G ++ AF L+   + +  R     F++L+   G AG  D  + VY EM+  G++P+ 
Sbjct: 330 AKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSA 389

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             Y +L+++  +A +      I+ EM   G  PN+  Y  ++ ++ ++   E  +SV+ +
Sbjct: 390 TMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSD 449

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G   + + Y+ LL M +  G  D A +++  M ++   +P   T+++++T+ + + 
Sbjct: 450 MEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSM-TNAGLRPGLSTYTALLTLLANKK 508

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD---- 332
            V  A  +  EM   GF  ++   + ++  Y K    D  +R L  +   GI  ++    
Sbjct: 509 LVDVAAKVLLEMKAMGFSVDVSA-SDVLMVYIKDGSVDLALRWLRFMGSSGIRTNNFIIR 567

Query: 333 -RFCGCLLNVMTQTPK-------------------EELGKLVECVEKSNSKLGYVVKLLL 372
             F  C+ N + ++ K                     L  LV C E+ N +  +++ +L 
Sbjct: 568 QLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLVRCQEEQNER--HLMLILS 625

Query: 373 EEQDIEGDF----------KKEAT-----ELFNSISKDVKKA----YCNCLIDLCVNLNL 413
             +     F          +K+       E F S+  ++++     + N L++  V +  
Sbjct: 626 ATKHKAHTFMCGLFTGPEQRKQPVLSFVREFFQSVDYELEEGAARYFVNVLLNYLVLMGQ 685

Query: 414 LENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTAL 457
           +  A  + ++    +++   I       WSL +++LS+GAAL A+
Sbjct: 686 INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALVAV 730



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 151/347 (43%), Gaps = 23/347 (6%)

Query: 101 NVEMAFGLYDRARNEKW--RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--- 155
           + + +  L+  A+ + W   ++   ++ L      + +FD   ++++EM       N   
Sbjct: 188 DTDASLSLFRWAKRQPWYSMLNDECYALLFDRLNQSRDFDAIQSLFDEMIRDSGDNNGVS 247

Query: 156 -MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
            +I  N ++  + +A++       +K++ D+G   +  TY SL+  +           VY
Sbjct: 248 SVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVY 307

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             M+  G  L  + Y  ++   A  G  D AF++F++MK  +N +P    F+S++     
Sbjct: 308 ESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMK-EKNLRPSFLVFASLVDSMGK 366

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G++  +  ++ EM   G  P+  +  SLI+ + KA + +  +R  + + + G  P+   
Sbjct: 367 AGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGL 426

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYV-----VKLLLEEQDIEGDFKKEATELF 389
              ++    ++ K E       V     K G++        LLE     G     A +L+
Sbjct: 427 YTMVVESHAKSGKLETAM---SVFSDMEKAGFLPTPSTYSCLLEMHSASGQV-DSAMKLY 482

Query: 390 NSISKDVKK---AYCNCLIDLCVNLNLLENACKLL----ELGLTLEV 429
           NS++    +   +    L+ L  N  L++ A K+L     +G +++V
Sbjct: 483 NSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDV 529


>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 121/236 (51%), Gaps = 7/236 (2%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++T++++YG AG F   ++++  M+  GV  N++TYN ++   G++    
Sbjct: 364 KMGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHD 423

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  + +A   +    ++ +++  G+++   LY T++
Sbjct: 424 KATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMI 483

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     QPD+ +  + ITI +  GKV EA  +F +  +AG 
Sbjct: 484 VAYQKAGLVAHAKRLLNELK-----QPDNVSRETAITILARAGKVDEAMWVFRQAFDAGE 538

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             ++ V   +I  + + ++   VV    ++ E+G  PD      +LN   +  K E
Sbjct: 539 VKDISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPDSNVIALVLNAFGKLRKFE 594



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 109/210 (51%), Gaps = 5/210 (2%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           ++STL+ +Y     F   ++++ EM  +    ++ T N ++D  G+ +   +    +  M
Sbjct: 303 SYSTLLAIYVDNQKFVEAVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGM 362

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G+ PN  +Y ++LR YG A    + + ++  M+ KG+  +V  YNT++++       
Sbjct: 363 RKMGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEH 422

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D+A  + ++M+ S   QP++ T+S++I+I    GK+  A  +F+++  +G + +  +  +
Sbjct: 423 DKATNLIQEMQ-SRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQT 481

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +I  Y KA       R LN L +    PD+
Sbjct: 482 MIVAYQKAGLVAHAKRLLNELKQ----PDN 507



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 5/213 (2%)

Query: 154 PNMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           P++  YN ++  + RAK+ WQ+   ++ EM   GLSP+  TY++L+  + +    + +  
Sbjct: 158 PSLNVYNVVIRNVLRAKQ-WQLAHGLFDEMLQKGLSPDKYTYSTLITHFSKQGLFDSSFF 216

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
             ++M+   +   + LY+ L+ +   +    +A  IF  +K S N  PD    + MI++ 
Sbjct: 217 WLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNALKGSGNIVPDLIACNMMISVY 276

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
                  EA  +  EM + G  P+    ++L+  Y   Q+  + V   + + E+    D 
Sbjct: 277 GKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMNEVECPIDL 336

Query: 333 RFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 365
             C  +++V  Q    ++ K  +C      K+G
Sbjct: 337 TTCNIMIDVYGQL---QMIKEADCFFWGMRKMG 366



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 115/274 (41%), Gaps = 23/274 (8%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +GK+    K+   +     R  +    +Y T      +AG ++ A  L+ + R    +ID
Sbjct: 416 YGKSLEHDKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKID 475

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              + T+I  Y  AG       +  E+K    +P+ ++    +  + RA +  +   +++
Sbjct: 476 EILYQTMIVAYQKAGLVAHAKRLLNELK----QPDNVSRETAITILARAGKVDEAMWVFR 531

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           +  D G   + + +  ++  + R R     + V+ +M+E G      +   +L     + 
Sbjct: 532 QAFDAGEVKDISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPDSNVIALVLNAFGKLR 591

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--- 297
             + A  +++ M       PD   F  M+ +   R   +  E++F E L++   PN+   
Sbjct: 592 KFERADALYKQMYEEGCVFPDEVHF-QMLGLYGARMDFNMVESLF-EKLDS--HPNINKK 647

Query: 298 ---FVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
              FV+ ++   Y +A R +D  R +NR+    I
Sbjct: 648 ELHFVVANI---YERADRFNDASRIMNRMNHKAI 678


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 125/250 (50%), Gaps = 4/250 (1%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            +AG ++ A+  +   + E  R D    + +I   G AG  D  + +++EM+ +   P+++
Sbjct: 1302 KAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVV 1361

Query: 158  TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN ++  +  +K R  +V + ++ M ++G+SP+  TY+ L+  + +    E  + +  E
Sbjct: 1362 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 1421

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCR 275
            M EKG       Y +L+         D A E+F+++K  ENC   S   ++ MI      
Sbjct: 1422 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK--ENCGSSSARVYAVMIKHLGKA 1479

Query: 276  GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            G++ +A  MF+EM + G  P+++   +L+    +    D+ +  + R+ E G  PD    
Sbjct: 1480 GRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSY 1539

Query: 336  GCLLNVMTQT 345
              +LN + +T
Sbjct: 1540 NIILNGLAKT 1549



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 110/229 (48%), Gaps = 2/229 (0%)

Query: 103  EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
            EM   + +  RN    + P   S ++++ G A      + ++ ++K    +P    YN++
Sbjct: 1131 EMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSM 1190

Query: 163  LDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            +  +    +  +V  +Y EM+  G   P+  TY++L+ A+ +    +  + +  EMKE G
Sbjct: 1191 IIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIG 1250

Query: 222  MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            MQ +  +Y  L+A+         A  +FE+M+  + C+PD +T++ +I      G++ EA
Sbjct: 1251 MQPTTKIYTMLIALFFKFNDAHGALSLFEEMR-HQYCRPDVFTYTELIRGLGKAGRIDEA 1309

Query: 282  EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               F EM   G  P+   + ++I   GKA R DD ++    +  L   P
Sbjct: 1310 YHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIP 1358



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 3/233 (1%)

Query: 100  GNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G  E    LY+    E     D   +S LI  +   G  D  + +  EMK IG++P    
Sbjct: 1198 GQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKI 1257

Query: 159  YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            Y  L+    +        ++++EM      P+  TY  L+R  G+A   ++    + EM+
Sbjct: 1258 YTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQ 1317

Query: 219  EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGK 277
             +G +      N ++      G  D+A ++F++M++   C P   T++++I  +   + +
Sbjct: 1318 REGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETL-RCIPSVVTYNTIIKALFESKSR 1376

Query: 278  VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             SE  + F  M E+G  P+ F  + LI  + K  R +  +  L  + E G  P
Sbjct: 1377 ASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 1429



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 1/189 (0%)

Query: 121  PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
            P A+ +LI   G A  +D    +++E+K      +   Y  ++  +G+A R      ++ 
Sbjct: 1431 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 1490

Query: 181  EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
            EM   G +P+   Y +L+    R    ++ LS  R M+E G    +  YN +L   A  G
Sbjct: 1491 EMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTG 1550

Query: 241  YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
                A E+  +MK S   +PD  ++++++   S  G   EA  +  EM   GFE +L   
Sbjct: 1551 GPHRAMEMLSNMKQS-TVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITY 1609

Query: 301  TSLIQCYGK 309
            +S+++  GK
Sbjct: 1610 SSILEAIGK 1618



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 2/192 (1%)

Query: 124  FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            ++ LI L+    +  G L+++EEM+    +P++ TY  L+  +G+A R  +    + EM 
Sbjct: 1258 YTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQ 1317

Query: 184  DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
              G  P+     +++   G+A   +D + +++EM+      SV  YNT++ A+       
Sbjct: 1318 REGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRA 1377

Query: 243  DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             E    FE MK S    P S+T+S +I       ++ +A  +  EM E GF P      S
Sbjct: 1378 SEVPSWFERMKES-GISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCS 1436

Query: 303  LIQCYGKAQRTD 314
            LI   GKA+R D
Sbjct: 1437 LIDALGKAKRYD 1448



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 123/307 (40%), Gaps = 43/307 (14%)

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-LLRAYGRARYGEDTLSVYRE 216
            TY  L+  +   ++  ++  + +EM  N +     T  S ++R  G A+     ++++ +
Sbjct: 1115 TYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQ 1174

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            +K +  Q     YN+++ M    G  ++  +++ +M +  +C PD+ T+S++I+     G
Sbjct: 1175 IKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLG 1234

Query: 277  KVSEAEAMFNEMLEAGFE-----------------------------------PNLFVLT 301
            +   A  + NEM E G +                                   P++F  T
Sbjct: 1235 RRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYT 1294

Query: 302  SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE-- 358
             LI+  GKA R D+       +   G  PD  F   ++N + +  + ++  KL + +E  
Sbjct: 1295 ELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETL 1354

Query: 359  ---KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLE 415
                S      ++K L E +    +       +  S        Y + LID     N +E
Sbjct: 1355 RCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY-SILIDGFCKTNRME 1413

Query: 416  NACKLLE 422
             A  LLE
Sbjct: 1414 KAMMLLE 1420



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 2/150 (1%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            +AG ++ A  ++D         D  A++ L+      G  D  L+    M+  G  P++ 
Sbjct: 1478 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 1537

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +YN +L+ + +   P +   +   M  + + P+  +Y ++L A   A   E+   + +EM
Sbjct: 1538 SYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM 1597

Query: 218  KEKGMQLSVTLYNTLLAMCADVG--YTDEA 245
               G +  +  Y+++L     V   YTD+ 
Sbjct: 1598 NTLGFEYDLITYSSILEAIGKVDHEYTDQG 1627


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 164/336 (48%), Gaps = 10/336 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKL-YGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           + +AF  +  A    +R D  +++ ++ L + T  +    L +  EM+  GV  N+ T N
Sbjct: 99  LALAFFRFAPASFPGFRHDAFSYNRILALLFRTRADPSEALRIVSEMERDGVSGNISTVN 158

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+   G      +   +  +    GL  N  TY  +L+A+ R+R       VY EM+ K
Sbjct: 159 LLVGIGGGGVEVTKCLELAMKW---GLRLNGYTYKCILQAHLRSREVSKGFEVYEEMRRK 215

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G  L +  YN LL   A  G  D+A+++FEDMK  + C+PD++T++ +I +    GK S+
Sbjct: 216 GYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMK-QKYCEPDAYTYTILIRMSGRAGKASK 274

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             + F+EM+  G   NL    +LI+  GK +  D V+  L+++ E G  P+       L+
Sbjct: 275 FLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLD 334

Query: 341 VMTQTPK-EELGKLVECVEK--SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           ++ +  +   L ++++  ++  + S   Y+VK L +   +  +      +++NS     +
Sbjct: 335 ILAKEGQLHRLNEVLDICDRYMNKSIYSYLVKSLSKSGHVS-EAHNVFCQMWNSYETGDR 393

Query: 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433
            A+ + L  LC +   LE A  LL +     V TD+
Sbjct: 394 DAFVSMLEVLCNSGKTLE-AIDLLHMMPEKGVATDV 428



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 125/264 (47%), Gaps = 53/264 (20%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +++G+V  A  ++ +  N     D +AF +++++   +G     +++   M   GV  ++
Sbjct: 369 SKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMPEKGVATDV 428

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN +   +G+ K+   + +++ +M  NG++P+  TY  ++ +YGR             
Sbjct: 429 GMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGR------------- 475

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
                                 VG  D+A  +FEDM +S +C+PD  T++S+I      G
Sbjct: 476 ----------------------VGLVDKASGLFEDMNAS-SCKPDVITYNSLINCLGKNG 512

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA-LNRLPELGITPDDRFC 335
            + EA  +F EM E G+ P++F  + LI+C+GK+ + D      L+ + E          
Sbjct: 513 DLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAE---------- 562

Query: 336 GCLLNVMTQTPKEELGKLVECVEK 359
           GC+ NV+T         L++C+E+
Sbjct: 563 GCIPNVVTYN------ILLDCLER 580



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 89  KLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 148
           KLK+ S+ T          L+D+ +      D   ++ +I  YG  G  D    ++E+M 
Sbjct: 440 KLKQVSFIT---------SLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMN 490

Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
           A   KP++ITYN+L++ +G+     +   ++KEM + G  P+  TY+ L+  +G++   +
Sbjct: 491 ASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVD 550

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
              +++ +M  +G   +V  YN LL      G T EA + +E MK  +   PDS T S
Sbjct: 551 MACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMK-QQGLTPDSITCS 607



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 1/172 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           +++++MKA G+ P++ TYN ++ + GR     +   ++++M  +   P+  TY SL+   
Sbjct: 449 SLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCL 508

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           G+    ++   +++EM+EKG    V  Y+ L+         D A  +F DM  +E C P+
Sbjct: 509 GKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDM-IAEGCIPN 567

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
             T++ ++      GK +EA   +  M + G  P+    + L +   ++QRT
Sbjct: 568 VVTYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSILERLESRSQRT 619



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 4/234 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+  V   F +Y+  R + + +D   ++ L+     +G  D    V+E+MK    +P+  
Sbjct: 198 RSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPDAY 257

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+   GRA +  +  + + EM   G + N   Y +L+ A G+ +  +  + V  +M
Sbjct: 258 TYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKM 317

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G Q +   Y+  L + A  G      E+ +      N       +S ++   S  G 
Sbjct: 318 IEGGCQPNQFTYSITLDILAKEGQLHRLNEVLDICDRYMN----KSIYSYLVKSLSKSGH 373

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           VSEA  +F +M  +    +     S+++    + +T + +  L+ +PE G+  D
Sbjct: 374 VSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMPEKGVATD 427



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 56/106 (52%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+++ A  L+   + + +  D   +S LI+ +G +   D   N++ +M A G  PN++TY
Sbjct: 512 GDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVTY 571

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           N LLD + R  +  +    Y+ M   GL+P+  T + L R   R++
Sbjct: 572 NILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSILERLESRSQ 617


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1429

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 186/420 (44%), Gaps = 23/420 (5%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            +R D + ++++++LY    +F   + +Y+ +K  G++P+  TYN L+    R  RP +  
Sbjct: 906  FRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGC 965

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++  EM   GL P  +TY SL+ A+G+ +   D   ++ E+  KG +L  + Y+ ++ + 
Sbjct: 966  SLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIY 1025

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             + G   +A ++   MK +   +P   T   ++      G+  EAE +   + E G   +
Sbjct: 1026 RNSGNHSKAEKLLSMMKDA-GVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLS 1084

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
                +S+I  Y K +     ++ L  + + G+ PD R   C +   + +    +   L++
Sbjct: 1085 TLPYSSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILLLQ 1144

Query: 356  CVEKSNSKLGYVVKLLLEEQD---IEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 412
             ++ S   L    +L+ E  D   +E D      E+  ++  +    + N L DL     
Sbjct: 1145 ALQDSGFDLP--SRLITERSDSLVLEVD---HCLEMLETMEDNAAFNFVNALEDLLWAFE 1199

Query: 413  LLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESG 471
            L   A  +  L +   +Y  D+   +   W    + LS GAAL A          +L+  
Sbjct: 1200 LRATASWVFRLAVKRSIYCHDVFRVAEQDWGADFRKLSGGAALDA----------SLQGY 1249

Query: 472  EEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLE 531
               P  + + TG    +Y+   L +  ++ L E+ +PF     + G  +    + + WL+
Sbjct: 1250 PASPKSVVLITGTA--EYNMVSLDNTLKACLWEMGSPFLPCRTRSGLLVAKAHSLRMWLK 1307



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 1/238 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L +  R    R D   ++TLI       N +  + V+++M+A   +P++ TYN ++
Sbjct: 265 VAIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMI 324

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR     + + ++KE+   G  P+  TY SLL A+ R    +    +  EM + G  
Sbjct: 325 SVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFI 384

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M    G    A +++ DMK S    PD+ T++ +I       K+ EA  
Sbjct: 385 RDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRT-PDAITYTVLIDSLGKANKMVEAAN 443

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           + +EML  G +P L   ++LI  Y +A +  +     + +   GI PD      +L+V
Sbjct: 444 VMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDV 501



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 123/267 (46%), Gaps = 8/267 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R  N+E A  ++D       + D   ++ +I +YG  G       +++E+++ G  P+ 
Sbjct: 293 SRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDA 352

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN+LL    R     +VK I  EM   G   +  TY +++  YG+       L +YR+
Sbjct: 353 VTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRD 412

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G       Y  L+          EA  +  +M +    +P   T+S++I   +  G
Sbjct: 413 MKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNI-GVKPTLRTYSALICGYARAG 471

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDR 333
           +  EAE  F+ M  +G  P+    + ++  +    R D+  +A+    E+   GITPD  
Sbjct: 472 QRLEAEETFDCMRRSGIRPDQLAYSVMLDVF---LRFDEATKAMMLYREMVRDGITPDPT 528

Query: 334 FCGCLL-NVMTQTPKEELGKLVECVEK 359
             G +L N+  +   E++ +++  +E+
Sbjct: 529 VYGAMLRNLGRENKVEDIQRIIRDMEE 555



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 37/235 (15%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R GNV+    + +      +  D   ++T+I +YG  G     L +Y +MK  G  P+ 
Sbjct: 363 AREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDA 422

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITY  L+D++G+A +  +   +  EM + G+ P   TY++L+  Y RA            
Sbjct: 423 ITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARA------------ 470

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
                                  G   EA E F+ M+ S   +PD   +S M+ +     
Sbjct: 471 -----------------------GQRLEAEETFDCMRRS-GIRPDQLAYSVMLDVFLRFD 506

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITP 330
           + ++A  ++ EM+  G  P+  V  ++++  G+  + +D+ R +  + E+ G+ P
Sbjct: 507 EATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNP 561



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 3/179 (1%)

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           Q + ++  M  +G SP  ++   LL+A       E+   V +E+++ G Q+S +    +L
Sbjct: 788 QARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLIL 847

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAG 292
              A V    EA +I++ MK++    P    +  MI +  C+GK V + EAM  EM EAG
Sbjct: 848 DAFARVSNIAEAKKIYQGMKAA-GYFPTMHLYRIMIGLL-CKGKRVRDVEAMVTEMEEAG 905

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
           F P+L +  S+++ Y         V+   R+ E G+ PD+     L+ +  +  + E G
Sbjct: 906 FRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEG 964



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/258 (20%), Positives = 101/258 (39%), Gaps = 36/258 (13%)

Query: 119  IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL---------------- 162
            +D   ++ LI+ Y  +G ++    V+  M   G  P + + N L                
Sbjct: 768  VDRKVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVV 827

Query: 163  -------------------LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
                               LD   R     + K IY+ M   G  P  + Y  ++    +
Sbjct: 828  TQEIQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCK 887

Query: 204  ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
             +   D  ++  EM+E G +  ++++N++L +   +    +  +I++ +K  +  QPD  
Sbjct: 888  GKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIK-EDGLQPDED 946

Query: 264  TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            T++++I +     +  E  ++ +EM   G EP L    SLI  +GK Q   D       L
Sbjct: 947  TYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEEL 1006

Query: 324  PELGITPDDRFCGCLLNV 341
               G   D  F   ++ +
Sbjct: 1007 LSKGSKLDRSFYHIMMKI 1024



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 109/261 (41%), Gaps = 41/261 (15%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGR 168
           D   + K ++ P  F  ++K  G   N+   L V+E +       PN      +L  +G+
Sbjct: 130 DVLDDSKVQMTPTDFCFVVKWVGQE-NWQRALEVFEWLNLRHWYSPNARMLATILAVLGK 188

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-ARYG--EDTLSVYR---------- 215
           A +      I+    ++ +      Y +++  Y R  R+   +  L + R          
Sbjct: 189 ANQEALAVEIFIR-AESTVDNTVQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVS 247

Query: 216 ------------------------EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
                                   E++  G++  +  YNTL++ C+     +EA ++F+D
Sbjct: 248 FNTLINARLKAGAMTPNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDD 307

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M+ +  CQPD WT+++MI++    G   +AE +F E+   G+ P+     SL+  + +  
Sbjct: 308 ME-AHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREG 366

Query: 312 RTDDVVRALNRLPELGITPDD 332
             D V    N + ++G   D+
Sbjct: 367 NVDKVKEICNEMVQMGFIRDE 387



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/148 (19%), Positives = 75/148 (50%)

Query: 108  LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
            L++   ++  ++D + +  ++K+Y  +GN      +   MK  GV+P + T + L+ + G
Sbjct: 1002 LFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYG 1061

Query: 168  RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
             + +P + + +   + + GLS +   Y+S++ AY + +     +    EMK++G++    
Sbjct: 1062 SSGQPQEAEKVLTNLKEMGLSLSTLPYSSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHR 1121

Query: 228  LYNTLLAMCADVGYTDEAFEIFEDMKSS 255
            ++   +   +   +T +A  + + ++ S
Sbjct: 1122 IWTCFIRAASLSEHTHDAILLLQALQDS 1149


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 131/261 (50%), Gaps = 3/261 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GNV+ A+ L++   +     +P  +++LI+ +   G  +    +++EM   G +P++ 
Sbjct: 473 KKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLT 532

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + I++++   G  P+  +Y+ L+    +A    +T S++  M
Sbjct: 533 LLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAM 592

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K++G  L    YN ++      G  D+A+E+ E+MK  +   P   T+ S+I   +   +
Sbjct: 593 KQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMK-VKRVPPTVATYGSIIDGLAKIDR 651

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F E    G E N+ V +SLI  +GK  R D+    L  + + G+TP+      
Sbjct: 652 LDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 711

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           L++ + +   EE+ + + C +
Sbjct: 712 LMDALVKA--EEINEALICFQ 730



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 2/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G VE A  L D  +      D   ++  I  +G AGN D     + E+K+ G+KP+ 
Sbjct: 228 AREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDD 287

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++Y +++  + +A R  + + ++ +M      P    Y +++  YG A   E+   +  +
Sbjct: 288 VSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQ 347

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +KE+G   SV  +N++L         DEA  +FE MK  ++ +P+S T++ +I +    G
Sbjct: 348 LKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMK--KDAEPNSSTYNIIIDMLCMAG 405

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           KV EA  + +EM  AG  PNL  +  ++    KA++ +          + G  P+
Sbjct: 406 KVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPN 460



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 117/250 (46%), Gaps = 3/250 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+AG       ++   + + + +D  A++ ++  +  +G  D    V EEMK   V P +
Sbjct: 577 TKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTV 636

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY +++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   +  E
Sbjct: 637 ATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEE 696

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           M +KG+  +V  +N+L+         +EA   F+ MK  + C P+++T+S +I  +C  +
Sbjct: 697 MMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMK-CSPNTYTYSILINGLCRVQ 755

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            K ++A   + EM + G  PN+   T++I    K     D      R    G TPD    
Sbjct: 756 -KYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASF 814

Query: 336 GCLLNVMTQT 345
             L+  M+  
Sbjct: 815 NALIEGMSHA 824



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A+++   ++   +S+LI  +G  G  D    + EEM   G+ PN+ T+N+L+D
Sbjct: 655 AYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMD 714

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M +   SPN  TY+ L+    R +        ++EM+++G+  
Sbjct: 715 ALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVP 774

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  Y T++A  A VG   +A  +FE  K++    PD+ +F+++I   S   +  EA  +
Sbjct: 775 NVVTYTTMIAGLAKVGNITDACSLFERFKANGG-TPDAASFNALIEGMSHANRAIEAYHV 833

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           F E    G   N+    SL+    KA+
Sbjct: 834 FEETRLKGCRINVKACISLLDALNKAE 860



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 2/211 (0%)

Query: 121 PN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           PN A + L+         D    V   M+ +  +P    Y  L+  M  A++P +   + 
Sbjct: 146 PNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELL 205

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M + G       + +L+RA  R    E  L++  E+K   ++  + LYN  +      
Sbjct: 206 RQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKA 265

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A++ F ++K S+  +PD  +++SMI +    G++SEAE +F +M      P  + 
Sbjct: 266 GNVDMAWKFFHELK-SQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYA 324

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             ++I  YG A + ++  + L++L E G  P
Sbjct: 325 YNTMIMGYGSAGQFENAYKLLDQLKERGCIP 355



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 112/251 (44%), Gaps = 5/251 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           AG VE A+ + D    E   + PN  +   ++     A  F+    ++E     G  PN 
Sbjct: 404 AGKVEEAYMIRDEM--EHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNS 461

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +L+D +G+         +++ M D G + N   Y SL+R +      ED   +++E
Sbjct: 462 VTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKE 521

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G Q  +TL NT +      G  ++   IFED+K      PD  ++S +I   +  G
Sbjct: 522 MNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGY-GFLPDVRSYSILIHGLTKAG 580

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  E  ++F+ M + GF  +     +++  + K+ + D     L  +    + P     G
Sbjct: 581 QARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYG 640

Query: 337 CLLNVMTQTPK 347
            +++ + +  +
Sbjct: 641 SIIDGLAKIDR 651



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 146/323 (45%), Gaps = 15/323 (4%)

Query: 50  ETQSSNPTKHSQNPQY-PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNV 102
           ET+ + P  ++ N     +G  G    +Y  ++    R       S+++      +   V
Sbjct: 314 ETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKV 373

Query: 103 EMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           + A  L++  + +    +PN+  ++ +I +   AG  +    + +EM+  G+ PN++T N
Sbjct: 374 DEALTLFEAMKKDA---EPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVN 430

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D + +AK+      +++  +  G +PN  TY SL+   G+    +D   ++  M + 
Sbjct: 431 IMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDT 490

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   +  +Y +L+      G  ++  +IF++M +   CQPD    ++ +      G V +
Sbjct: 491 GHNANPVVYTSLIRNFFMHGRKEDGHKIFKEM-NRRGCQPDLTLLNTYMDCVFKAGDVEK 549

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             A+F ++   GF P++   + LI    KA +  +     + + + G   D R    +++
Sbjct: 550 GRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVD 609

Query: 341 VMTQTPKEELGKLVECVEKSNSK 363
              ++ K  L K  E +E+   K
Sbjct: 610 GFCKSGK--LDKAYEVLEEMKVK 630



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 95/205 (46%), Gaps = 1/205 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R  K+R   +A++ LI     A   +  L +  +M+ +G +  +  +  L+  + R  R 
Sbjct: 174 RRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRV 233

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                +  E+  + L P+   Y   +  +G+A   +     + E+K +G++     Y ++
Sbjct: 234 EGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSM 293

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           + +    G   EA E+F  M+ +E   P ++ +++MI      G+   A  + +++ E G
Sbjct: 294 IWVLCKAGRLSEAEELFGQME-TERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERG 352

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVV 317
             P++    S++ C GK ++ D+ +
Sbjct: 353 CIPSVVSFNSILTCLGKKRKVDEAL 377


>gi|145356823|ref|XP_001422624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582867|gb|ABP00941.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 744

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 7/249 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPN 155
            R  + E A  +    R   ++    A++T+IK  G A  ++  L  YE M K  G KPN
Sbjct: 54  ARVEDAEDAAAVERVLRQSVFKPGAPAYTTVIKACGKASQWEKALKAYEMMTKLHGAKPN 113

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            IT++ L++ +G+AK+  +   I+ EM D G+ PN  TY++LL A  RA+  +  + +++
Sbjct: 114 TITFSALINALGKAKQCDRAFQIFDEMNDRGIEPNIFTYSALLGACARAKQYQRAMDIFQ 173

Query: 216 EMKE--KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           ++ E  + +++    Y   +  C      D+A EIFE M +S   + +  T+++++  C 
Sbjct: 174 DLIENHRDVEVDRITYGAAIQCCVQGRRADKAIEIFERMLAS-GIKGNIITYNAVLMACE 232

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G    A+ MF  M       +     ++I    +A++   V+   + +PE G+TPD  
Sbjct: 233 KSGDSDGAQEMFERMSAEQVPMDRATFHAMIGACDRARQLSKVMDYYHMMPERGVTPD-- 290

Query: 334 FCGCLLNVM 342
             G + NV+
Sbjct: 291 -AGTVSNVL 298



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           D  + ++E M A G+K N+ITYN +L    ++      + +++ M+   +  +  T+ ++
Sbjct: 203 DKAIEIFERMLASGIKGNIITYNAVLMACEKSGDSDGAQEMFERMSAEQVPMDRATFHAM 262

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           + A  RAR     +  Y  M E+G+       + +L  C++      A +++ D ++  +
Sbjct: 263 IGACDRARQLSKVMDYYHMMPERGVTPDAGTVSNVLMACSNAKDPLTAIKVYHDARAKFD 322

Query: 258 CQPDSWTFSSMITICSCRGK 277
                  F+++I     RGK
Sbjct: 323 VHRTPGMFNNLIGALH-RGK 341



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 36/175 (20%)

Query: 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
           +G+ DG   ++E M A  V  +  T++ ++    RA++  +V   Y  M + G++P+  T
Sbjct: 234 SGDSDGAQEMFERMSAEQVPMDRATFHAMIGACDRARQLSKVMDYYHMMPERGVTPDAGT 293

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEK-------GM------------------------ 222
            +++L A   A+     + VY + + K       GM                        
Sbjct: 294 VSNVLMACSNAKDPLTAIKVYHDARAKFDVHRTPGMFNNLIGALHRGKRYDLVYEQLFHD 353

Query: 223 -----QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
                 LSV+ Y  L+  C   G  +++F++FE+ K       DS+ ++ +   C
Sbjct: 354 SMTQSALSVSTYVHLMMACERFGNWEKSFQLFEEFKRHSPSSVDSYVWTRVFYAC 408


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 135/284 (47%), Gaps = 34/284 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  ++D    E    D  +++TL+  Y  AG     L+V+ EM   G+ P+++
Sbjct: 232 KAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVV 291

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+  M +A       T+ ++M + GL  N  T+ +L+  + +  + +D L   R M
Sbjct: 292 TFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 351

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-----------------ENCQ- 259
           ++  ++ SV  YN L+     VG  DEA E+  +M++                  +NC  
Sbjct: 352 RQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDT 411

Query: 260 ----------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                           PD+ T+SS+I +     ++S+A  +F  M++ G +P+ F  TSL
Sbjct: 412 HSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSL 471

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           I  + K    +  +   +++ + G+ PD      L+N ++++ +
Sbjct: 472 IDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 515



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 3/214 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN ++   LI+     G+    L++  +M+  G  PN++TYN L+    RA      +
Sbjct: 146 VAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAE 205

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +   M D GL PN  T+ S++    +A   ED   V+ EM  +G+      YNTL+   
Sbjct: 206 RLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGY 265

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G + EA  +F +M + +   PD  TF+S+I +    G +  A  +  +M E G + N
Sbjct: 266 CKAGCSHEALSVFAEM-TQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMN 324

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               T+LI  + K    DD + A+  + +  I P
Sbjct: 325 EVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKP 358



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 106/213 (49%), Gaps = 3/213 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TL+  +  AG  DG   +   M   G+KPN++T+N++++ M +A +    + +
Sbjct: 183 PNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKV 242

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + EM   GL+P+  +Y +L+  Y +A    + LSV+ EM +KG+   V  + +L+ +   
Sbjct: 243 FDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCK 302

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  + A  +   M+     Q +  TF+++I     +G + +A      M +   +P++ 
Sbjct: 303 AGNLEWAVTLVRQMR-ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVV 361

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +LI  Y    R D+    L+ +   G+ PD
Sbjct: 362 CYNALINGYCMVGRMDEARELLHEMEAKGLKPD 394



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 3/230 (1%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           P  F +LIK Y +  N               G  P+++ YN +L  +  A      +  +
Sbjct: 80  PRPFDSLIKSYASLPNRASLAAAALAFARSAGYVPSVLAYNAVLLALSDASL-TSARRFF 138

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  +G++PN  TY  L+RA     + ++ LS+ R+M+  G   +V  YNTL+A     
Sbjct: 139 DSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRA 198

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A E    M      +P+  TF+SM+      GK+ +A  +F+EM+  G  P+   
Sbjct: 199 GEVDGA-ERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVS 257

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             +L+  Y KA  + + +     + + GI PD      L++VM +    E
Sbjct: 258 YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLE 307



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 96/186 (51%), Gaps = 3/186 (1%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           ++ M + GV PN+ TYN L+  + GR  R  +  +I ++M   G  PN  TY +L+ A+ 
Sbjct: 138 FDSMLSDGVAPNVYTYNILIRALCGRGHRK-EALSILRDMRGAGCGPNVVTYNTLVAAFF 196

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           RA   +    +   M + G++ ++  +N+++      G  ++A ++F++M   E   PD 
Sbjct: 197 RAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMM-REGLAPDG 255

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            ++++++      G   EA ++F EM + G  P++   TSLI    KA   +  V  + +
Sbjct: 256 VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQ 315

Query: 323 LPELGI 328
           + E G+
Sbjct: 316 MRERGL 321



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/320 (20%), Positives = 139/320 (43%), Gaps = 33/320 (10%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  L      +  + D   +ST+I  Y    +      + ++M   GV P+ ITY
Sbjct: 374 GRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITY 433

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           ++L+  +   KR      ++K M   GL P+  TY SL+  + +    E  LS++ +M +
Sbjct: 434 SSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVK 493

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC------- 272
            G+   V  Y+ L+   +      EA ++   +   E   P +  + +++  C       
Sbjct: 494 AGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPI-PANTKYDALMHCCRKAELKS 552

Query: 273 --------SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN--- 321
                     +G ++EA+ ++  ML+  +  +  V + LI  + +A    +V++AL+   
Sbjct: 553 VLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRA---GNVMKALSFHK 609

Query: 322 RLPELGITPDDR-----FCGCLLNVMTQTPKEELGKLVECVEKSNSKLG-YVVKLLLEEQ 375
           ++ + G  P+         G   N M     + + +L+ C   ++++    ++ L L E 
Sbjct: 610 QMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEG 669

Query: 376 DIEGDFKKEATELFNSISKD 395
           +++        ++ + ++KD
Sbjct: 670 NVDA-----VLDVLHGMAKD 684


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 1/238 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L +  R    R D   ++TLI     A N +    V+++M+A   +P++ TYN ++
Sbjct: 309 LAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMI 368

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR     + + ++ ++   G  P+  +Y SLL A+ R    E    ++ EM + G  
Sbjct: 369 SVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFG 428

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M    G  + A +++ DM+SS    PD+ T++ +I       K++EA  
Sbjct: 429 KDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGR-NPDAVTYTVLIDSLGKTNKIAEAAG 487

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           + +EML  G +P L   ++LI  Y KA +  +     + +   GI PD      +L++
Sbjct: 488 VMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDI 545



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/424 (21%), Positives = 193/424 (45%), Gaps = 17/424 (4%)

Query: 117  WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++ D + +++++K+Y    +F   + VY+ +K  G++P+  TYN L+    R  RP +  
Sbjct: 949  FKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGF 1008

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++  EM   GL P  +TY SL+ ++G+ +  E    ++ E++ KG +L  + Y+T++ + 
Sbjct: 1009 SLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIY 1068

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             + G   +A  +F  MK +   +P   T   ++      G+  EAE + + + E G   +
Sbjct: 1069 RNSGSHSKAERLFSMMKDA-GVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLS 1127

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
                +S+I  Y +    +  ++ L ++ + G+ PD R   C +   + + +  E   L+ 
Sbjct: 1128 TLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLN 1187

Query: 356  CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLE 415
             ++ +   L   ++LL E+ +          E+  ++  +    + N L DL     L  
Sbjct: 1188 ALQDAGFDLP--IRLLTEKPESLVSALDRCLEMLETLEDNAAFNFVNALEDLLWAFELRA 1245

Query: 416  NACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWI----ND----LSKA 467
             A  + +L +   +Y     R   + +    S+S    +  L++ I    ND    L  +
Sbjct: 1246 TASWVFQLAIKKRIYRHDVFRHADKSNKWQSSMS---PIQMLNVTIQKENNDKKDLLDAS 1302

Query: 468  LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAK 527
            L+   E P  + + TG    +Y+   L S  ++ L E+ +PF     + G  +    + +
Sbjct: 1303 LQGCPESPKSVVLITGTA--EYNMVSLDSTLKACLWEMGSPFLPCKSRSGLLIAKAHSLR 1360

Query: 528  SWLE 531
             WL+
Sbjct: 1361 MWLK 1364



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 127/267 (47%), Gaps = 8/267 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RA N+E A  ++D       + D   ++ +I +YG  G       ++ ++++ G  P+ 
Sbjct: 337 SRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDA 396

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++YN+LL    R     +VK I++EM   G   +  TY +++  YG+    E  L +YR+
Sbjct: 397 VSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRD 456

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+  G       Y  L+          EA  +  +M ++   +P   T+S++I   +  G
Sbjct: 457 MQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNT-GVKPTLKTYSALICGYAKAG 515

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDR 333
           K  EAE  F+ ML +G  P+    + ++  +    R ++  RA+    E+   GIT D  
Sbjct: 516 KPVEAEETFDCMLRSGIRPDHLAYSVMLDIH---LRFNEPKRAMTLYKEMLHDGITLDHS 572

Query: 334 FCGCLLNVMTQTPK-EELGKLVECVEK 359
               +L  + +  K E++G+++  +E+
Sbjct: 573 LYELMLRTLRKVNKVEDIGRVIRDMEE 599



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 119/238 (50%), Gaps = 9/238 (3%)

Query: 118 RIDPNA------FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR--A 169
           R +P+A      ++ ++ +Y   G F+    + + M+  G KP+++++N L++   +  A
Sbjct: 245 RAEPSAGNTVQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGA 304

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
             P     +  E+  +GL P+  TY +L+ A  RA   E+   V+ +M+    Q  +  Y
Sbjct: 305 MMPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTY 364

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N ++++    G + +A ++F D++ S    PD+ +++S++   +  G V + + ++ EM+
Sbjct: 365 NAMISVYGRCGLSGKAEQLFNDLE-SRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMV 423

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           + GF  +     ++I  YGK  + +  ++    +   G  PD      L++ + +T K
Sbjct: 424 KIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNK 481



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 131/336 (38%), Gaps = 75/336 (22%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +G+ G S K+    N    R       SY++      R GNVE    +++      +  D
Sbjct: 371 YGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKD 430

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              ++T+I +YG  G  +  L +Y +M++ G  P+ +TY  L+D++G+  +  +   +  
Sbjct: 431 EMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMS 490

Query: 181 EMTDNGLSPNWNTYASLLRAYGRA---------------------------------RYG 207
           EM + G+ P   TY++L+  Y +A                                 R+ 
Sbjct: 491 EMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFN 550

Query: 208 E--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
           E    +++Y+EM   G+ L  +LY  +L     V   ++   +  DM+  E C  ++ T 
Sbjct: 551 EPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDME--EICGMNTQTI 608

Query: 266 SSMITICSC--------------------------------RGKVSEAEAMFNEMLEAGF 293
           SS++    C                                 G+ +EA  +   + E   
Sbjct: 609 SSILVKGECYDEAAKMLRRAISDHFEIDRENLLSILSSYSSSGRHAEALDLLEFLKEHSP 668

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
             +  +  +L+    KAQ+ D  ++  +   ELG T
Sbjct: 669 RSSQMITEALVVMLCKAQQLDAALKEYSNNRELGFT 704



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 117/255 (45%), Gaps = 2/255 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDP-NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G  E A  L D A ++   ++  + +  +I+ YG    +    +V   ++   +  + 
Sbjct: 754  KMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDR 813

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
              +N L++    +    + + I+  M  +G SP  +T   LL+A       ++   V +E
Sbjct: 814  KVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQE 873

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            +++ G ++S +    +L   A  G   E  +I+  MK++    P    +  M  + S   
Sbjct: 874  LQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAA-GYFPTMHLYRVMARLLSRGK 932

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +V + EAM +EM EAGF+P+L +  S+++ Y   +     ++   R+ E G+ PD+    
Sbjct: 933  QVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYN 992

Query: 337  CLLNVMTQTPKEELG 351
             L+ +  +  + E G
Sbjct: 993  TLIVMYCRDHRPEEG 1007



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 109/243 (44%), Gaps = 49/243 (20%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            VE A  L++  +++  ++D + + T++K+Y  +G+      ++  MK  GV+P + T + 
Sbjct: 1039 VEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHL 1098

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR--EMKE 219
            L+ + G + +P + + +   + + G + +   Y+S++ AY   R G+  + + +  +MK+
Sbjct: 1099 LMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAY--LRNGDYNIGIQKLIQMKK 1156

Query: 220  KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            +G+                                    +PD   ++  I   S   + S
Sbjct: 1157 EGL------------------------------------EPDHRIWTCFIRAASLSRRTS 1180

Query: 280  EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            EA  + N + +AGF+  + +LT         ++ + +V AL+R  E+  T +D      +
Sbjct: 1181 EAIVLLNALQDAGFDLPIRLLT---------EKPESLVSALDRCLEMLETLEDNAAFNFV 1231

Query: 340  NVM 342
            N +
Sbjct: 1232 NAL 1234


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 1/244 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R GN   A  ++   ++  +  D   ++ L++ Y   G+  G   V+E M   GVK + 
Sbjct: 252 AREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADH 311

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++YN L+D  GRA      + IY  M   G  P   ++  LL A+ +A    D  +  R 
Sbjct: 312 VSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRR 371

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++  G++    ++N+LL    + G  D+   ++E M+ S  C+PD  T +++I + +  G
Sbjct: 372 LESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSV-CKPDIITLNTLINVYAQGG 430

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +  AE +FN +   GF P++   TSL+  Y K +     V    ++   G  PD     
Sbjct: 431 YIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKCVSVYQKMLIAGCIPDRATAK 490

Query: 337 CLLN 340
            LL+
Sbjct: 491 VLLS 494



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 133/307 (43%), Gaps = 39/307 (12%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV-KTIYKE 181
           +F+ L+  Y   G  +    V  EMK     P ++TYN  L+ + ++   WQ+ + +++E
Sbjct: 138 SFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSG-SWQLAEDVFRE 196

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--------------------- 220
           M + G+ P  NT+  ++  YG+A +      +++ M++                      
Sbjct: 197 MQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGN 256

Query: 221 --------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
                         G    +  YN LL   +  G+   A E+FE M  +   + D  +++
Sbjct: 257 CVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEA-GVKADHVSYN 315

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            +I      G +S+A+A+++ M + GF+P +     L+  + KA R  D    + RL  +
Sbjct: 316 ILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESM 375

Query: 327 GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 385
           G+ PD      LL     + + +++  L E ++ S  K   +    L     +G + + A
Sbjct: 376 GVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERA 435

Query: 386 TELFNSI 392
            E+FNS+
Sbjct: 436 EEIFNSL 442



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 111/250 (44%), Gaps = 7/250 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+ ++A  ++   +N       N F+ +I +YG A +     ++++ M+     P++ 
Sbjct: 183 KSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLF 242

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R     + + I+ E+   G  P+  TY +LL AY R  +      V+  M
Sbjct: 243 TYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETM 302

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC--- 274
            E G++     YN L+      G   +A  I++ MK     +P   T  S I + S    
Sbjct: 303 LEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKV-GFKP---TMKSHILLLSAFVK 358

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+V++AE     +   G EP+ F+  SL+  YG + R D +      +      PD   
Sbjct: 359 AGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIIT 418

Query: 335 CGCLLNVMTQ 344
              L+NV  Q
Sbjct: 419 LNTLINVYAQ 428



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 100/218 (45%), Gaps = 7/218 (3%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++ D   F+ L+  YG    +    N +  MK     P   ++N L+    R  +  + +
Sbjct: 97  FKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAE 156

Query: 177 TIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
            +  EM ++  SP    +NTY  +L   G  +  ED   V+REM+ +G+  +V  +  ++
Sbjct: 157 RVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAED---VFREMQNRGVPPAVNTFTLMI 213

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            +     ++ +A  +F+ M+ +  C P  +T++++I   +  G    AE +F E+   GF
Sbjct: 214 NIYGKAHHSAKAEHLFQSMRKAL-CPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGF 272

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            P+++   +L++ Y +             + E G+  D
Sbjct: 273 VPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKAD 310



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 2/216 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+   A  +++       + D  +++ LI  +G AG       +Y+ MK +G KP M
Sbjct: 287 SRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTM 346

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    +A R    +   + +   G+ P+   + SLL AYG +   +   S+Y  
Sbjct: 347 KSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYES 406

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+    +  +   NTL+ + A  GY + A EIF  ++ S+   PD  +++S++   S R 
Sbjct: 407 MQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLE-SKGFTPDVMSWTSLMGAYSKRK 465

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLI-QCYGKAQ 311
              +  +++ +ML AG  P+      L+  C G  Q
Sbjct: 466 LYRKCVSVYQKMLIAGCIPDRATAKVLLSSCRGPEQ 501



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG V  A     R  +     D   F++L+  YG +G  D   ++YE M+    KP++
Sbjct: 357 VKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDI 416

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           IT N L++   +     + + I+  +   G +P+  ++ SL+ AY + +     +SVY++
Sbjct: 417 ITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKCVSVYQK 476

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           M   G          LL+ C       E  ++ E  +
Sbjct: 477 MLIAGCIPDRATAKVLLSSCRGPEQVKEVTDMIETQR 513


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 147/337 (43%), Gaps = 24/337 (7%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G VE A   + + +  ++R+ P   S   L+  +   G  DG    +++M   G KP + 
Sbjct: 39  GMVEEAIQCFSKMK--RFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVF 96

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++D M +       + +++EM   GL P+  TY S++  +G+    +DT+  + EM
Sbjct: 97  TYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEM 156

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+   +  V  YN L+      G   +  E F +MK +   +P+  ++S+++      G 
Sbjct: 157 KDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRN-GLKPNVVSYSTLVDAFCKEGM 215

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD------ 331
           + +A   + +M   G  PN +  TSLI  Y K     D  R  N + ++G+  +      
Sbjct: 216 MQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTA 275

Query: 332 --DRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
             D  CG       + P E L  L E VE  + K+  V   +L +   +     +A + F
Sbjct: 276 LIDGLCG------WENPTEGLHLLDEMVE-LDIKVTVVTFCVLIDGLCKNKLVSKAIDYF 328

Query: 390 NSISKD----VKKAYCNCLIDLCVNLNLLENACKLLE 422
             IS D       A    +ID     N +E A  L E
Sbjct: 329 GRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFE 365



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 106/226 (46%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+VE A GL++  +      D   ++++I  +G  G  D  +  +EEMK +  +P++I
Sbjct: 107 KEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI 166

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   +  +  +    ++EM  NGL PN  +Y++L+ A+ +    +  +  Y +M
Sbjct: 167 TYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDM 226

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G+  +   Y +L+     +G   +AF +  +M      + +  T++++I        
Sbjct: 227 RRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQV-GVEWNVVTYTALIDGLCGWEN 285

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            +E   + +EM+E   +  +     LI    K +     +    R+
Sbjct: 286 PTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRI 331



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 4/236 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++     ++  ++     D   ++ LI  +   G     L  + EMK  G+KPN++
Sbjct: 142 KVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVV 201

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+ L+D   +     Q    Y +M   GL PN  TY SL+ AY +     D   +  EM
Sbjct: 202 SYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEM 261

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G++ +V  Y  L+          E   + ++M   +  +    TF  +I    C+ K
Sbjct: 262 LQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELD-IKVTVVTFCVLIDGL-CKNK 319

Query: 278 -VSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            VS+A   F  +  + G + N  + T++I    K  + +       ++ + G+ PD
Sbjct: 320 LVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPD 375



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 120/297 (40%), Gaps = 13/297 (4%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPN 122
           K G  PK   +         K    SY T      + G ++ A   Y   R      +  
Sbjct: 177 KFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEY 236

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            +++LI  Y   GN      +  EM  +GV+ N++TY  L+D +   + P +   +  EM
Sbjct: 237 TYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEM 296

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVY-REMKEKGMQLSVTLYNTLLAMCADVGY 241
            +  +     T+  L+    + +     +  + R   + G+Q +  +Y  ++        
Sbjct: 297 VELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQ 356

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            + A  +FE M + +   PD   ++S++     +G V EA A+ ++M+E G + +L   T
Sbjct: 357 VEAATTLFEQM-AQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYT 415

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           SL+       +       L  +   GI PD+  C  +L         ELG + E VE
Sbjct: 416 SLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLK-----KHYELGCINEAVE 467



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 3/150 (2%)

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           T N   P +  + +L          E+ +  + +MK   +       N LL   A +G T
Sbjct: 17  TRNVCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKT 76

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLT 301
           D     F+DM  +   +P  +T++ MI  C C+ G V  A  +F EM   G  P+     
Sbjct: 77  DGVKRFFKDMIGA-GAKPTVFTYNIMID-CMCKEGDVEAARGLFEEMKFRGLIPDTVTYN 134

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           S+I  +GK  R DD V     + ++   PD
Sbjct: 135 SMIDGFGKVGRLDDTVCFFEEMKDMCCEPD 164


>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 553

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F  +I ++  AGN++    ++  M   GV  + +TYN+L+      K   +V  IY
Sbjct: 247 DQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLMSFETNYK---EVSKIY 303

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M  +GL P+  +YA L+ AYG+AR  ++ L+V+ EM + G++ +   YN LL   A  
Sbjct: 304 DQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAIS 363

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A  +F+ M+  +   PD  ++++M++       ++ AE  FN + + G EPN+  
Sbjct: 364 GMVEQARTVFKSMRR-DRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVT 422

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +LI+ Y K    D ++     +   G+  +      +++
Sbjct: 423 YGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMD 463



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
           LI  YG  GNF     V   M  +G  PN++++  L++  GR  R    + I++ M  +G
Sbjct: 146 LITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSSG 205

Query: 187 LSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             P+  TY  +L+ +    + +  E+      + ++  ++    +++ ++ M    G  +
Sbjct: 206 PKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYE 265

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A +IF  M +       + T++S+++  +   +VS+   ++++M  +G +P++     L
Sbjct: 266 KARQIFALM-TQRGVPKSTVTYNSLMSFETNYKEVSK---IYDQMQRSGLQPDVISYALL 321

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           I  YGKA+R D+ +     + + G+ P  +    LL+    +   E  + V
Sbjct: 322 INAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQARTV 372



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 37/248 (14%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    + D  +++ LI  YG A   D  L V+EEM   GV+P    YN LLD   
Sbjct: 302 IYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFA 361

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            +    Q +T++K M  +  +P+  +Y ++L AY  A       + +  +K+ G++ +V 
Sbjct: 362 ISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVV 421

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  L+   A     D+  E +E+M+                                  
Sbjct: 422 TYGALIKGYAKTNNLDKMMEKYEEMQLR-------------------------------- 449

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTP 346
               G + N  + T+++  YGK +     V     + + G+ PD +    LL++  T   
Sbjct: 450 ----GVKANQTIFTTIMDAYGKNKDFGSAVIWYKEMEQYGVPPDQKAKNILLSLAKTADE 505

Query: 347 KEELGKLV 354
           ++E  ++V
Sbjct: 506 QKEANQMV 513



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 98/210 (46%), Gaps = 12/210 (5%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  S   L++ YG    ++    ++  M++ G KP+ +TY  +L       +  + + +
Sbjct: 173 PNVVSHTALMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEV 232

Query: 179 YKEMTD---NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           ++ + D   + L P+   +  ++  + +A   E    ++  M ++G+  S   YN+L  M
Sbjct: 233 FETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSL--M 290

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
             +  Y  E  +I++ M+ S   QPD  +++ +I       +  EA A+F EML+AG  P
Sbjct: 291 SFETNY-KEVSKIYDQMQRS-GLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRP 348

Query: 296 NLFVLTSLIQCY---GKAQRTDDVVRALNR 322
                  L+  +   G  ++   V +++ R
Sbjct: 349 THKAYNILLDAFAISGMVEQARTVFKSMRR 378



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 72/147 (48%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R +++  D  +++T++  Y  A +  G  N +  +K  G++PN++T
Sbjct: 363 SGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVT 422

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +     ++   Y+EM   G+  N   + +++ AYG+ +     +  Y+EM+
Sbjct: 423 YGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMDAYGKNKDFGSAVIWYKEME 482

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEA 245
           + G+       N LL++        EA
Sbjct: 483 QYGVPPDQKAKNILLSLAKTADEQKEA 509


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 123/235 (52%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  L +  + +   ++P  F+TLI  Y  +G  D  L +   M+  G++ ++ 
Sbjct: 377 KAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVF 436

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN++   + +  R  + K +   M + G+SPN  ++ +L+  Y +     +   V+REM
Sbjct: 437 AYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREM 496

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +EKG   ++  YN L+   +  G   EA ++ ++++ +    PD +T +S+I      GK
Sbjct: 497 EEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE-NRGLIPDVYTCTSLIHGECIDGK 555

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           V  A  +F+EM + G  PN+   T++I    K  R+++  +  + + E G+TPDD
Sbjct: 556 VDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDD 610



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 100/208 (48%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ LI  +   G  +    ++EEM+  G++ ++  Y +++    R+    +   ++ EMT
Sbjct: 298 YTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMT 357

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D GL P+ +TY +L+    +A   E    +  EM+ KG+ L+  ++NTL+    + G  D
Sbjct: 358 DKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVD 417

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  + + +   +  + D + ++S+ +      +  EA+ +   M+E G  PN    T+L
Sbjct: 418 EALRL-QVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTL 476

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I  Y K     +  R    + E G  P+
Sbjct: 477 IDIYCKEGNFVEAKRVFREMEEKGNVPN 504



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 1/241 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  L++  R +    D   ++++I     +GN    L +++EM   G+ P+  TY
Sbjct: 309 GKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTY 368

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+  + +A +    + +  EM   G+  N   + +L+  Y  +   ++ L +   M++
Sbjct: 369 GALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEK 428

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG++  V  YN++ +    +   DEA  +   M       P++ +F+++I I    G   
Sbjct: 429 KGLESDVFAYNSIASGLCKLNRKDEAKGLLFSM-VERGVSPNTMSFTTLIDIYCKEGNFV 487

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA+ +F EM E G  PN+     LI  Y K     +  +  + L   G+ PD   C  L+
Sbjct: 488 EAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLI 547

Query: 340 N 340
           +
Sbjct: 548 H 548



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 110/248 (44%), Gaps = 9/248 (3%)

Query: 88  SKLKEKSYDT--RAGNVEMAFG----LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 141
           +K KEK +D   R       FG     ++    + + ID  +    +      G  D CL
Sbjct: 151 AKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCL 210

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
             +  M  + V+  + +   +LD + +       + +  E+   G+  N  TY + +  Y
Sbjct: 211 RFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGY 270

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            +         +   M+++G+  +V  Y  L+   +++G  +EA  +FE+M+  +  + D
Sbjct: 271 FKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMR-EKGIEAD 329

Query: 262 SWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
            + ++S+I+ C+CR G V  A  +F+EM + G  P+     +LI    KA + +     +
Sbjct: 330 VYVYTSIIS-CNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLV 388

Query: 321 NRLPELGI 328
           N +   GI
Sbjct: 389 NEMQGKGI 396



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 102/234 (43%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+VEM   L D    +  + +   ++  I+ Y    +  G   +   M+  GV  N++
Sbjct: 237 KRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVV 296

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+       +  + + +++EM + G+  +   Y S++    R+   +  L ++ EM
Sbjct: 297 TYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEM 356

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG+  S   Y  L+      G  + A  +  +M+  +    +   F+++I      G 
Sbjct: 357 TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ-GKGIDLNPVIFNTLIDGYCESGM 415

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EA  +   M + G E ++F   S+     K  R D+    L  + E G++P+
Sbjct: 416 VDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN 469



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 37/153 (24%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPW 173
           + PN  +F+TLI +Y   GNF     V+ EM+  G  PN+ITYN L+D     G  K   
Sbjct: 466 VSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAH 525

Query: 174 QVK--------------------------------TIYKEMTDNGLSPNWNTYASLLRAY 201
           ++K                                 ++ EM   GL PN  TY +++   
Sbjct: 526 KLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGL 585

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            +    E+   +Y EMKE G+    T+Y++L+ 
Sbjct: 586 SKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVG 618



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ GN++ A  L D   N     D    ++LI      G  D  L +++EM   G+ PN+
Sbjct: 516 SKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNV 575

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           +TY  ++  + +  R  +   +Y EM + GL+P+   Y+SL+
Sbjct: 576 VTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 617


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 3/212 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ L+ +YG  G       +  EM+A G+ PN++TYN L+    RA    +   +
Sbjct: 178 PNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAAL 237

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            K +   GL P+  TY +L+ A+ RA   E  L  + EM++     ++  YN L+ +   
Sbjct: 238 KKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGR 297

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +   D+  ++F+ M+  +NC PD  T++S++      G ++E   +F EM  AG+ P + 
Sbjct: 298 MEKLDDMMKVFKFMQ-EKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVD 356

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               LI+CYG+    D  V     L   G+ P
Sbjct: 357 TFNILIECYGRCGYVDYSVDIYKGLLRTGLQP 388



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 134/251 (53%), Gaps = 3/251 (1%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           ++E + +D  A+++LI +   A  FD  + ++E M+  G + N +TYN +LD  G+    
Sbjct: 66  QDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDS 125

Query: 173 W-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
           W +++++++EM D  +SP+  TY +++ A  +  + ++ L +++EMKE G   +   YN 
Sbjct: 126 WDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNA 185

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           LL +    G   EA E+  +M+++    P+  T++ +I   +  G   EA A+   +L  
Sbjct: 186 LLDVYGKGGMHKEASELLVEMEAA-GISPNIVTYNELIAAYARAGLCDEAAALKKSLLSK 244

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EEL 350
           G  P+ F   +LI  + +A+R +  +     + +   TP+      L+++  +  K +++
Sbjct: 245 GLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDM 304

Query: 351 GKLVECVEKSN 361
            K+ + +++ N
Sbjct: 305 MKVFKFMQEKN 315



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 1/234 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG  + A  L     ++    D   + TLI  +  A  ++  L  + EM+     PN+
Sbjct: 226 ARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNI 285

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+D  GR ++   +  ++K M +   +P+  T+ SLL+++G      +  +V+RE
Sbjct: 286 VTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFRE 345

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G    V  +N L+      GY D + +I++ +  +   QP   TF++++   +  G
Sbjct: 346 MKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRT-GLQPTVPTFAALMASLAREG 404

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +  + E +  EM EAG + +      LI  Y  + +   + + ++ L +    P
Sbjct: 405 RWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQP 458



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 113/247 (45%), Gaps = 37/247 (14%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + F+ LI+ YG  G  D  +++Y+ +   G++P + T+  L+ ++ R  R  Q + + +E
Sbjct: 356 DTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQE 415

Query: 182 MTDNGLSPNWNTYASLLRAYGRA--------------RYGEDTLS--------------- 212
           M + GL  +   +A L+ +Y  +              +  +  LS               
Sbjct: 416 MAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCC 475

Query: 213 -------VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
                     ++ + G    + ++N +++MCA  G+ + A ++ E+++ ++  +PD  T+
Sbjct: 476 MDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQ-LKPDGVTY 534

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           + ++++    G   +AE + +EM  AG  PNL    +L+  Y K  R DD  R    +  
Sbjct: 535 NCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVA 594

Query: 326 LGITPDD 332
             + PD+
Sbjct: 595 ARVRPDN 601



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 2/223 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +++L+K +G  G      NV+ EMK  G  P + T+N L++  GR         IY
Sbjct: 319 DLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIY 378

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           K +   GL P   T+A+L+ +  R    +    V +EM E G+QLS   +  L+   A+ 
Sbjct: 379 KGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANS 438

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNLF 298
           G   +  +  ++++ S   QP S        +  C+  + +EA+   N++ + G  P++ 
Sbjct: 439 GQFFQLRKYIDELEKSAK-QPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIK 497

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           V  ++I    K    +  V+ L  + +  + PD     CL+++
Sbjct: 498 VFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSM 540



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 4/208 (1%)

Query: 127 LIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTD 184
            +K  G  G +   L V+E + K    K   +   ++L  +G  ++ P  ++       D
Sbjct: 8   FVKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQD 67

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT-D 243
              S +   Y SL+    RAR  ++ ++++  M+ +G + +   YN +L +    G + D
Sbjct: 68  ESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWD 127

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
               +F++MK  E   PD +T+++MIT C       EA  +F EM EAG  PN     +L
Sbjct: 128 RIQSLFQEMKDLE-ISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNAL 186

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  YGK     +    L  +   GI+P+
Sbjct: 187 LDVYGKGGMHKEASELLVEMEAAGISPN 214



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           LYD   +     D   F+ +I +    G  +  + + EE++   +KP+ +TYN L+   G
Sbjct: 487 LYDNGHSP----DIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYG 542

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R     + + +  EM   G +PN  TY +LL +Y +    +D   V+ +M    ++    
Sbjct: 543 REGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNF 602

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            +NTL+   + +G   EA  + E M +   CQP   TF +++
Sbjct: 603 TFNTLVGSYSSLGLYKEALSVIEYM-TEHGCQPTQITFKALL 643



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTI--YKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
           G  P++  +N ++     AKR W  + +   +E+    L P+  TY  L+  YGR     
Sbjct: 491 GHSPDIKVFNAMISMC--AKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYH 548

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
               V  EM+  G   ++  YNTLL      G  D+A  +F DM ++   +PD++TF+++
Sbjct: 549 KAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAAR-VRPDNFTFNTL 607

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           +   S  G   EA ++   M E G +P      +L+  Y
Sbjct: 608 VGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G +E A  L +  R  + + D   ++ L+ +YG  G +     V  EM+  G  PN+
Sbjct: 507 AKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNL 566

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITYN LL +  +  R      ++ +M    + P+  T+ +L+ +Y      ++ LSV   
Sbjct: 567 ITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEY 626

Query: 217 MKEKGMQLSVTLYNTLL 233
           M E G Q +   +  LL
Sbjct: 627 MTEHGCQPTQITFKALL 643



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TL+  Y   G  D    V+ +M A  V+P+  T+N L+ +        +  ++
Sbjct: 564 PNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSV 623

Query: 179 YKEMTDNGLSPNWNTYASLLRAY 201
            + MT++G  P   T+ +LL  Y
Sbjct: 624 IEYMTEHGCQPTQITFKALLDGY 646


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 130/261 (49%), Gaps = 8/261 (3%)

Query: 103 EMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           + A  L+     E     PN  A++T+I  +   G      +++ EM   GVKP+++TYN
Sbjct: 245 QRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYN 304

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D + +A+   + + + ++MT NG  P+  TY  ++  Y      ++   ++R+MK +
Sbjct: 305 LIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSR 364

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+  ++ + N+ LA     G + EA EIF+ M +++  +PD  ++ +++   +  G  ++
Sbjct: 365 GLIPNIVICNSFLASLCKHGRSKEAAEIFDSM-TAKGHKPDIVSYCTLLHGYASEGWFAD 423

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              +FN M   G   +  V   LI  Y K    DD +     + + G++PD      +++
Sbjct: 424 MIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIS 483

Query: 341 VMTQTPKEELGKLVECVEKSN 361
             ++     +G+L + +EK N
Sbjct: 484 AFSR-----MGRLTDAMEKFN 499



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  ++D    +  + D  ++ TL+  Y + G F   + ++  MK+ G+  +  
Sbjct: 382 KHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCR 441

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N L+    +         I+ EM   G+SP+  TY++++ A+ R     D +  + +M
Sbjct: 442 VFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQM 501

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             +G+Q +  +Y++++   C   G   +A E+  +M +    +PD   F+S+I      G
Sbjct: 502 VARGIQPNTAVYHSIIQGFCMHGGLV-KAKELVSEMINKGIPRPDIVFFNSVINSLCKDG 560

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +V +A  +F+ + + G  P++   TSLI  Y    + D   + L+ +  +G+  D
Sbjct: 561 RVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETD 615



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 120/274 (43%), Gaps = 8/274 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V  A  ++D   +   R D   F++LI  Y   G  D    + + M+ +GV+ +++TY
Sbjct: 560 GRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTY 619

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + LLD   +  R     T+++EM   G+ PN  TY  +L    RA         + EM E
Sbjct: 620 STLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIE 679

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G  ++V++Y  +L         DEA  +F+ +  + N +      ++MI       +  
Sbjct: 680 SGTTVTVSIYGIILGGLCRNNCADEAIILFQKL-GTMNVKFSITILNTMINAMYKVQRKE 738

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA+ +F  +  +G  PN      +I    K    +D     + + + GI P  R    ++
Sbjct: 739 EAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRII 798

Query: 340 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLE 373
            ++ +  K E+ K    + K + K     ++LLE
Sbjct: 799 RMLLE--KGEIAKAGNYLSKVDGK-----RILLE 825



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 36/245 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A  L+     +  + D   ++ +I     A   D    V  +M   G +P+ +
Sbjct: 277 KEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTV 336

Query: 158 TYNNLLD---TMGRAK--------------------------------RPWQVKTIYKEM 182
           TYN ++    T+GR K                                R  +   I+  M
Sbjct: 337 TYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSM 396

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           T  G  P+  +Y +LL  Y    +  D + ++  MK  G+     ++N L+   A  G  
Sbjct: 397 TAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMV 456

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D+A  IF +M+  +   PD  T+S++I+  S  G++++A   FN+M+  G +PN  V  S
Sbjct: 457 DDAMLIFTEMQ-QQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHS 515

Query: 303 LIQCY 307
           +IQ +
Sbjct: 516 IIQGF 520



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 129/298 (43%), Gaps = 3/298 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A  ++   + +    D   +ST+I  +   G     +  + +M A G++PN  
Sbjct: 452 KRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTA 511

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            Y++++          + K +  EM + G+  P+   + S++ +  +     D   ++  
Sbjct: 512 VYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDL 571

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           + + G +  V  + +L+     VG  D+AF+I + M+     + D  T+S+++      G
Sbjct: 572 VTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVV-GVETDIVTYSTLLDGYFKNG 630

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++++   +F EM   G +PN      ++    +A RT    +  + + E G T      G
Sbjct: 631 RINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYG 690

Query: 337 CLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
            +L  + +    +E   L + +   N K    +   +     +   K+EA ELF +IS
Sbjct: 691 IILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATIS 748



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 17/259 (6%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV-YRE 216
           TY+ L+D   RA+RP     ++  +   GL  +  T ++LL+    A   E+ ++V    
Sbjct: 159 TYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHR 218

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCR 275
           M E G   +V  Y+ +L    D   +  A ++F+ M K    C P+   ++++I      
Sbjct: 219 MSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKE 278

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G+  +A ++F+EM   G +P++     +I    KA+  D     L ++   G  PD    
Sbjct: 279 GETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTY 338

Query: 336 GCLLNVMTQTPKEELGKLVECVE--KSNSKLGYVVKLLLEEQDIEGDFK----KEATELF 389
            C+++         LG+L E  +  +     G +  +++    +    K    KEA E+F
Sbjct: 339 NCMIH-----GYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIF 393

Query: 390 NSISKDVKK----AYCNCL 404
           +S++    K    +YC  L
Sbjct: 394 DSMTAKGHKPDIVSYCTLL 412


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 133/261 (50%), Gaps = 3/261 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A+ L+++  +     +P  +++LI+ +   G  +    +Y+EM   G +P++ 
Sbjct: 467 KKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLT 526

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + I+++M   G  P+  +Y+ L+    +A    +T ++++ M
Sbjct: 527 LLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAM 586

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G  L    YN ++      G  D+A+E+ E+MK  ++  P   T+ S++   +   +
Sbjct: 587 SQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMK-VKHVHPTVATYGSIVDGLAKIDR 645

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F E    G E N+ + +SLI  +GK  R D+    L  + + G+TP+      
Sbjct: 646 LDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 705

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           L++ + +T  EE+ + + C +
Sbjct: 706 LMDALVKT--EEIDEALICFQ 724



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 114/235 (48%), Gaps = 2/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G +E A  L D  +      D   ++  I  +G AG+ D     + E+KA G++P+ 
Sbjct: 222 AREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDD 281

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++Y +++  + +A R  + + ++ +M      P    Y +++  YG A   +D   +   
Sbjct: 282 VSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLER 341

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++E+G   SV  +N++L         DEA  +F+ MK  ++ +P+  T++ +I +    G
Sbjct: 342 LRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMK--KDAKPNISTYNIIIDMLCMAG 399

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +V+EA  + +EM  AG  PNL  +  ++    KA + ++  R      E G  P+
Sbjct: 400 RVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPN 454



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 3/248 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+AG       ++     + + +D  A++ ++     +G  D    V EEMK   V P +
Sbjct: 571 TKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTV 630

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY +++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   +  E
Sbjct: 631 ATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEE 690

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           M +KG+  +V  +N+L+         DEA   F+ MK  + C P+++T+S +I  +C  +
Sbjct: 691 MMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMK-CSPNTYTYSILINGLCRVQ 749

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            K ++A   + EM + G  PN+   T++I    K     D      R    G  PD    
Sbjct: 750 -KYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASF 808

Query: 336 GCLLNVMT 343
             L+  M+
Sbjct: 809 NALIEGMS 816



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 2/211 (0%)

Query: 121 PN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           PN A + L+     +   +    V   M+ +  +P    Y  L+  +  A++P +   + 
Sbjct: 140 PNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELL 199

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M D G   +   + +L+RA  R    E  L++  E+K   ++  + LYN  +      
Sbjct: 200 RQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKA 259

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A++ F ++K +   +PD  +++SM+ +    G++ EAE +F +M      P  + 
Sbjct: 260 GSVDMAWKFFHELK-AHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYA 318

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             ++I  YG A+R DD  + L RL E G  P
Sbjct: 319 YNTMIMGYGSAERFDDAYKLLERLRERGCIP 349



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 106/207 (51%), Gaps = 1/207 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A+++   ++   +S+LI  +G  G  D    + EEM   G+ PN+ T+N+L+D
Sbjct: 649 AYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMD 708

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + + +   +    ++ M +   SPN  TY+ L+    R +        ++EM+++G+  
Sbjct: 709 ALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIP 768

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  Y T+++  A VG   +A+ +FE  K++    PDS +F+++I   S   +  EA  +
Sbjct: 769 NVVTYTTMISGLAKVGNITDAYSLFERFKTNGGI-PDSASFNALIEGMSNANRPMEAYQV 827

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           F E    G   N+    SL+    K +
Sbjct: 828 FEETRLRGCRLNVKTCISLLDALNKTE 854



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 124/283 (43%), Gaps = 8/283 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           AG V  A+ + D    E   + PN  S   ++     A   +    ++E     G  PN 
Sbjct: 398 AGRVNEAYKIRDEM--ELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNS 455

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +L+D +G+  +      ++++M D G   N   Y SL+R +      ED   +Y+E
Sbjct: 456 VTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKE 515

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G +  +TL NT +      G  ++   IFEDMKS     PD  ++S +I   +  G
Sbjct: 516 MIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSF-GFLPDVRSYSILIHGLTKAG 574

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  E   +F  M + GF  +     +++    K+ + D     L  +    + P     G
Sbjct: 575 QARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYG 634

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
            +++ + +   + L +     E++ SK G  + ++L    I+G
Sbjct: 635 SIVDGLAKI--DRLDEAYMLFEEAKSK-GIELNVILYSSLIDG 674



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 125/262 (47%), Gaps = 4/262 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V+ A  L+D  + +  + + + ++ +I +   AG  +    + +EM+  G+ PN+++ N 
Sbjct: 367 VDEALTLFDVMKKDA-KPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNI 425

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++D + +A +  +   I++  ++ G +PN  TY SL+   G+    +D   ++ +M + G
Sbjct: 426 MVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAG 485

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
              +  +Y +L+      G  ++  +I+++M      +PD    ++ +      G+V + 
Sbjct: 486 HDANPIIYTSLIRNFFMHGRKEDGHKIYKEM-IRRGGRPDLTLLNTYMDCVFKAGEVEKG 544

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
            A+F +M   GF P++   + LI    KA +  +       + + G   D R    +++ 
Sbjct: 545 RAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDG 604

Query: 342 MTQTPKEELGKLVECVEKSNSK 363
           + ++ K  + K  E +E+   K
Sbjct: 605 LCKSGK--VDKAYEVLEEMKVK 624



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 101/221 (45%), Gaps = 1/221 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R+  +E AF +    R+ K+R   +A++ LI     A   +  L +  +M+ +G + ++
Sbjct: 152 VRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSV 211

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             +  L+  + R  +      +  E+  + L P+   Y   +  +G+A   +     + E
Sbjct: 212 PLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHE 271

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K  G++     Y +++ +    G   EA E+F  M++  +  P ++ +++MI       
Sbjct: 272 LKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDV-PCAYAYNTMIMGYGSAE 330

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           +  +A  +   + E G  P++    S++ C GK ++ D+ +
Sbjct: 331 RFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEAL 371



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 1/158 (0%)

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
           ++ + +EM+  G        A+L+    R+R  ED   V   M+    +   + Y  L+ 
Sbjct: 125 LEKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIG 184

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
             A+    + A E+   M+     +     F++++   +  G++  A A+ +E+  +  E
Sbjct: 185 ALAEARQPERALELLRQMQDV-GYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLE 243

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           P++ +    I C+GKA   D   +  + L   G+ PDD
Sbjct: 244 PDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDD 281


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 1/216 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  +Y R + E+ R +   +  +I +YG A      L V+ EMK++G KPN+ TY  L
Sbjct: 259 EKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTAL 318

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++   R     + + +++EM   G  P+   Y +L+ AY RA   +    ++  M+  G 
Sbjct: 319 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGC 378

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +     YN L+      G   EA   F+++K  +  +P   +   +++  +  G V+  E
Sbjct: 379 EPDRASYNILVDAFGRAGLHQEAEAAFQELK-QQGMRPTMKSHMLLLSAHARSGNVARCE 437

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            +  ++ ++G  P+ F L +++  YG+A R DD+ R
Sbjct: 438 EVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMER 473



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 2/223 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           + VY+ MK    + N  TY  +++  G+A +P     +++EM   G  PN  TY +L+ A
Sbjct: 262 VEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNA 321

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           + R    E    V+ EM++ G +  V  YN L+   +  G    A EIF  M+    C+P
Sbjct: 322 FAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHM-GCEP 380

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  +++ ++      G   EAEA F E+ + G  P +     L+  + ++         +
Sbjct: 381 DRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVM 440

Query: 321 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 362
            +L + G+ PD      +LN   +  + +++ +L   +E+ + 
Sbjct: 441 AQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDG 483



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 1/209 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L++ Y  +G       V  EM+  G+ P    YN  LD + +A+   +   +Y+ 
Sbjct: 208 DTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQR 267

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M       N  TY  ++  YG+A     +L V+REMK  G + ++  Y  L+   A  G 
Sbjct: 268 MKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGL 327

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A E+FE+M+ + + +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 328 CEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYN 386

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
            L+  +G+A    +   A   L + G+ P
Sbjct: 387 ILVDAFGRAGLHQEAEAAFQELKQQGMRP 415



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 114/272 (41%), Gaps = 4/272 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G  E A  +++  +      D  A++ L++ Y  AG   G   ++  M+ +G +P+ 
Sbjct: 323 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 382

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN L+D  GRA    + +  ++E+   G+ P   ++  LL A+ R+        V  +
Sbjct: 383 ASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQ 442

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ---PDSWTFSSMITICS 273
           + + G++      N +L      G  D+   +F  M+  +      PD+ T++ ++    
Sbjct: 443 LHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYG 502

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G +   EA F  +   G   ++   TS I  Y + +     +R    + + G  PD  
Sbjct: 503 RAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAG 562

Query: 334 FCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 364
               LL   +   + E++  +V  + K    L
Sbjct: 563 TAKVLLAACSDERQVEQVTAIVRSMHKDAKTL 594



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 1/219 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R   +R D   ++ LI  YG           Y  +      P   TY  LL     + + 
Sbjct: 164 RRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQL 223

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + + +  EM  NG+ P    Y + L    +AR  E  + VY+ MK++  + +   Y  +
Sbjct: 224 HRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLM 283

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           + +         +  +F +MKS   C+P+  T+++++   +  G   +AE +F EM +AG
Sbjct: 284 INVYGKANQPMSSLRVFREMKSV-GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAG 342

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EP+++   +L++ Y +A          + +  +G  PD
Sbjct: 343 HEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPD 381



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 4/163 (2%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK----A 149
           S   R+GNV     +  +      R D  A + ++  YG AG  D    ++  M+    A
Sbjct: 425 SAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGA 484

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
               P+  TYN L++  GRA    +++  ++ +   GL+ +  T+ S + AY R +    
Sbjct: 485 SAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQ 544

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            L V+ EM + G          LLA C+D    ++   I   M
Sbjct: 545 CLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVRSM 587


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 5/235 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           AGN+++A   +DR   EK    PN   ++TLI  Y      D    +   M   G++PN+
Sbjct: 218 AGNLDVALRFFDRM--EKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNL 275

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I+YN +++ + R  R  ++  +  EM   G S +  TY +L++ Y +       L ++ E
Sbjct: 276 ISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAE 335

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G+  SV  Y +L+      G  + A E  + M+    C P+  T+++++   S +G
Sbjct: 336 MLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLC-PNERTYTTLVDGFSQKG 394

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++EA  +  EM++ GF P++    +LI  +  A +  D +  L  + E G+TPD
Sbjct: 395 YMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPD 449



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 4/239 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E++F L +  +   + +D   ++TLIK Y   GNF   L ++ EM   G+ P++ITY +L
Sbjct: 293 EISFVLTEMNK-RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSL 351

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           + +M +A    +      +M   GL PN  TY +L+  + +  Y  +   V +EM + G 
Sbjct: 352 IHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGF 411

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEA 281
             SV  YN L+      G   +A  + EDMK  +   PD  ++S++++   CR   V EA
Sbjct: 412 SPSVVTYNALINGHCIAGKMVDAIAVLEDMK-EKGLTPDVVSYSTVLS-GFCRSYDVDEA 469

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +  +M+  G +P+    +SLIQ + + +RT +     + +  +G+ PD+     L+N
Sbjct: 470 LRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALIN 528



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 114/226 (50%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+  A    D+ R      +   ++TL+  +   G  +    V +EM   G  P+++
Sbjct: 357 KAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVV 416

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++    A +      + ++M + GL+P+  +Y+++L  + R+   ++ L V R+M
Sbjct: 417 TYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKM 476

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG++     Y++L+    +   T EA ++F++M       PD +T++++I      G 
Sbjct: 477 VAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRV-GLPPDEFTYTALINAYCMEGD 535

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           + +A  + NEM+E G  P++   + LI    K  RT +  R L +L
Sbjct: 536 LQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKL 581



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 37/259 (14%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYK 180
           + F  ++K Y      D  L++    +A G  P +++YN +LD   R+KR     + ++K
Sbjct: 135 SVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM  + +SPN  TY  L+R +  A   +  L  +  M++KG   +V  YNTL+     + 
Sbjct: 195 EMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLR 254

Query: 241 YTDEAFEIFEDMKSSENCQP-----------------------------------DSWTF 265
             D+ FE+   M + +  +P                                   D  T+
Sbjct: 255 KIDDGFELLRSM-ALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTY 313

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           +++I      G   +A  M  EML  G  P++   TSLI    KA   +     L+++  
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRV 373

Query: 326 LGITPDDRFCGCLLNVMTQ 344
            G+ P++R    L++  +Q
Sbjct: 374 RGLCPNERTYTTLVDGFSQ 392



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 122/282 (43%), Gaps = 56/282 (19%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG +  A  + +  + +    D  ++ST++  +  + + D  L V  +M A G+KP+ IT
Sbjct: 428 AGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTIT 487

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y++L+      +R  +   ++ EM   GL P+  TY +L+ AY      +  + ++ EM 
Sbjct: 488 YSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMV 547

Query: 219 EKGMQLSVTLY-----------------------------------NTLLAMCADV---- 239
           EKG+   V  Y                                   +TL+  C+++    
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKS 607

Query: 240 -----------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNE 287
                      G   EA ++FE M   +N +PD   ++ MI    CRG  + +A +++ E
Sbjct: 608 VVSLIKGFCMKGMMTEADQVFESM-LEKNHKPDGTAYNVMIH-GHCRGGDIRKAYSLYKE 665

Query: 288 MLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPEL 326
           M+++GF  +   + +L++     GK    + V+  + R  EL
Sbjct: 666 MVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCEL 707


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 123/235 (52%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  L +  + +   ++P  F+TLI  Y  +G  D  L +   M+  G++ ++ 
Sbjct: 381 KAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVF 440

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN++   + +  R  + K +   M + G+SPN  ++ +L+  Y +     +   V+REM
Sbjct: 441 AYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREM 500

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +EKG   ++  YN L+   +  G   EA ++ ++++ +    PD +T +S+I      GK
Sbjct: 501 EEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE-NRGLIPDVYTCTSLIHGECIDGK 559

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           V  A  +F+EM + G  PN+   T++I    K  R+++  +  + + E G+TPDD
Sbjct: 560 VDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDD 614



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 102/209 (48%), Gaps = 3/209 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ LI  +   G  +    ++EEM+  G++ ++  Y +++    R+    +   ++ EMT
Sbjct: 302 YTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMT 361

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D GL P+ +TY +L+    +A   E    +  EM+ KG+ L+  ++NTL+    + G  D
Sbjct: 362 DKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVD 421

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           EA  + + +   +  + D + ++S+ + +C    K  EA+ +   M+E G  PN    T+
Sbjct: 422 EALRL-QVVMEKKGLESDVFAYNSIASGLCKLNRK-DEAKGLLFSMVERGVSPNTMSFTT 479

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           LI  Y K     +  R    + E G  P+
Sbjct: 480 LIDIYCKEGNFVEAKRVFREMEEKGNVPN 508



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 1/241 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  L++  R +    D   ++++I     +GN    L +++EM   G+ P+  TY
Sbjct: 313 GKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTY 372

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+  + +A +    + +  EM   G+  N   + +L+  Y  +   ++ L +   M++
Sbjct: 373 GALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEK 432

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG++  V  YN++ +    +   DEA  +   M       P++ +F+++I I    G   
Sbjct: 433 KGLESDVFAYNSIASGLCKLNRKDEAKGLLFSM-VERGVSPNTMSFTTLIDIYCKEGNFV 491

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA+ +F EM E G  PN+     LI  Y K     +  +  + L   G+ PD   C  L+
Sbjct: 492 EAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLI 551

Query: 340 N 340
           +
Sbjct: 552 H 552



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 110/248 (44%), Gaps = 9/248 (3%)

Query: 88  SKLKEKSYDT--RAGNVEMAFG----LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 141
           +K KEK +D   R       FG     ++    + + ID  +    +      G  D CL
Sbjct: 155 AKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCL 214

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
             +  M  + V+  + +   +LD + +       + +  E+   G+  N  TY + +  Y
Sbjct: 215 RFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGY 274

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            +         +   M+++G+  +V  Y  L+   +++G  +EA  +FE+M+  +  + D
Sbjct: 275 FKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMR-EKGIEAD 333

Query: 262 SWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
            + ++S+I+ C+CR G V  A  +F+EM + G  P+     +LI    KA + +     +
Sbjct: 334 VYVYTSIIS-CNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLV 392

Query: 321 NRLPELGI 328
           N +   GI
Sbjct: 393 NEMQGKGI 400



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 102/234 (43%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+VEM   L D    +  + +   ++  I+ Y    +  G   +   M+  GV  N++
Sbjct: 241 KRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVV 300

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+       +  + + +++EM + G+  +   Y S++    R+   +  L ++ EM
Sbjct: 301 TYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEM 360

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG+  S   Y  L+      G  + A  +  +M+  +    +   F+++I      G 
Sbjct: 361 TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ-GKGIDLNPVIFNTLIDGYCESGM 419

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EA  +   M + G E ++F   S+     K  R D+    L  + E G++P+
Sbjct: 420 VDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN 473



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 37/153 (24%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPW 173
           + PN  +F+TLI +Y   GNF     V+ EM+  G  PN+ITYN L+D     G  K   
Sbjct: 470 VSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAH 529

Query: 174 QVK--------------------------------TIYKEMTDNGLSPNWNTYASLLRAY 201
           ++K                                 ++ EM   GL PN  TY +++   
Sbjct: 530 KLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGL 589

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            +    E+   +Y EMKE G+    T+Y++L+ 
Sbjct: 590 SKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVG 622



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ GN++ A  L D   N     D    ++LI      G  D  L +++EM   G+ PN+
Sbjct: 520 SKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNV 579

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           +TY  ++  + +  R  +   +Y EM + GL+P+   Y+SL+
Sbjct: 580 VTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 621


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 5/236 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           AG  E A GL D+   E   + PN   FS  +   G AG +   L +   M+A    PN+
Sbjct: 160 AGQWERALGLLDQMAEEG--VPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNV 217

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY   +D  G+A      + +  EM + G++PN  T+ S + A G     ++ L++ R+
Sbjct: 218 QTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRD 277

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G+Q ++  Y   +  C D      A  + E M+ S   + D  +F++ I  C+  G
Sbjct: 278 MPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMR-SRGIRGDEVSFTAAIDACAQGG 336

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
               A A+ +EM + G  P +   ++ I   GK Q+    V  L  + E+G++P++
Sbjct: 337 AWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNE 392



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  +  R R      +   ++  I   G AG +     +  EM+  GV PN+I
Sbjct: 194 KAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVI 253

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N+ +  +G   +  +   + ++M   G+ PN  +Y + + A G        L+V+ +M
Sbjct: 254 TFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQM 313

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G++     +   +  CA  G  + A  + ++M+  E   P   +FS+ I+ C    +
Sbjct: 314 RSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMR-DEGIPPTVRSFSTAISACGKGQQ 372

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
              A A+  EM E G  PN     + I   G+A +    +  L+++   G+
Sbjct: 373 WGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGV 423



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 10/167 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G  EMA  L D  R+E       +FST I   G    +   + +  EM+ +GV PN 
Sbjct: 333 AQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNE 392

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +++N  +D  GRA +     ++  +M+  G+     TY +++ A G+ +     +SV RE
Sbjct: 393 VSFNAAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGKGKEWARAVSVLRE 452

Query: 217 M-----KEKGMQLSVTL-----YNTLLAMCADVGYTDEAFEIFEDMK 253
           M     K  G    V +     Y+  +  C   G  +EA  + E ++
Sbjct: 453 MLAGQAKTDGDMAPVPMADVVSYSAAIDACVRAGEWEEAISLVELLR 499



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 85/186 (45%), Gaps = 9/186 (4%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++++ R+   R D  +F+  I      G ++  L + +EM+  G+ P + +++  + 
Sbjct: 306 ALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAIS 365

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G+ ++  +   + +EM + G+SPN  ++ + + A GRA      LS+  +M   G+  
Sbjct: 366 ACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPR 425

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDM-----KSSENCQP----DSWTFSSMITICSCR 275
               YN ++A C        A  +  +M     K+  +  P    D  ++S+ I  C   
Sbjct: 426 GTITYNAVIAACGKGKEWARAVSVLREMLAGQAKTDGDMAPVPMADVVSYSAAIDACVRA 485

Query: 276 GKVSEA 281
           G+  EA
Sbjct: 486 GEWEEA 491



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 16/190 (8%)

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L + GR  +  +  T      ++G+  +  TY+ L+ A  R+   E+ L +   M+ +G+
Sbjct: 41  LKSQGRKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGV 100

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMK-------SSENCQPDSWTFSSMITICSCR 275
                 +   +  CA  G  + A  + +          ++    P+  TFSS +  C   
Sbjct: 101 APDHFAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNA 160

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G+   A  + ++M E G  PN F  ++ +   GKA +    +  L R+         R  
Sbjct: 161 GQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRM---------RAA 211

Query: 336 GCLLNVMTQT 345
            C  NV T T
Sbjct: 212 NCPPNVQTYT 221


>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 868

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 177/402 (44%), Gaps = 12/402 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L +++G  G F   + ++ +M   GV+P+M+T  N++   G        + + 
Sbjct: 389 DTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVL 448

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + MT  G+ P  + Y  L+ A G A   E+    +  M E G   ++  YN L    A  
Sbjct: 449 EYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARG 508

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLF 298
           G   EA  IF  M ++   Q    +F ++I    C+G ++ +A   + EM ++ F P+  
Sbjct: 509 GLFQEAEAIFSRMSNNAGIQKSKDSFDALIE-AYCQGSRLDDAVKAYMEMRKSRFNPDER 567

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 357
            L  ++  Y  A   D+       L      P       +L++  +  +  +   L+E +
Sbjct: 568 SLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 627

Query: 358 E--KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNL 413
           +  +++S    +  L+  E D   +++     L NS  +  D    + N L+ +      
Sbjct: 628 KTNRASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQ 687

Query: 414 LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEE 473
              A ++L+  +   ++ ++   +   WSL +  +S+G AL A+ +W+N L   L   E+
Sbjct: 688 KGRAARVLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDED 747

Query: 474 FPPLLGINTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 510
            P L  +    G+ + S   +GL  A V  S L + L+A FH
Sbjct: 748 LPQLASVVVLRGEMEKSTVTRGLPIAKVVYSFLNDTLSASFH 789



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 6/240 (2%)

Query: 103 EMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           +M  GL+   R++     R D   ++TL+         D    +   M   GV P+ ++Y
Sbjct: 230 DMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSY 289

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +++D    A    +   ++ EM   G + + + Y  L+ A+ R     D ++V R+M+ 
Sbjct: 290 RHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQA 349

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +   Y  LL +    G  D   ++F +M+++    PD+ T++ +  +    G   
Sbjct: 350 DGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA--VPPDTATYNVLFRVFGDGGFFK 407

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCL 338
           E   +F++ML+ G +P++    +++   G      D    L  +   G+ P  D + G +
Sbjct: 408 EVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLV 467



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW----QVKTI 178
           ++++LI  Y      +    + ++MKA GV P   TYN +L    RA  P      +  +
Sbjct: 176 SYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGL 235

Query: 179 YKEMTDNG---LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + EM  +    + P+  TY +LL A       + +  +   M E G+      Y  ++  
Sbjct: 236 FAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDA 295

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            A  G    A E+F +M ++ +   D+  +  ++   +  G  ++A A+  +M   G  P
Sbjct: 296 FASAGNLSRAAELFSEMAATGHT-ADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAP 354

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
                  L+  YG+  R D  VR L R     + PD      L  V
Sbjct: 355 TAATYRVLLDLYGRQGRFDG-VRQLFREMRTAVPPDTATYNVLFRV 399


>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 890

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 177/402 (44%), Gaps = 12/402 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L +++G  G F   + ++ +M   GV+P+M+T  N++   G        + + 
Sbjct: 411 DTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVL 470

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + MT  G+ P  + Y  L+ A G A   E+    +  M E G   ++  YN L    A  
Sbjct: 471 EYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARG 530

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLF 298
           G   EA  IF  M ++   Q    +F ++I    C+G ++ +A   + EM ++ F P+  
Sbjct: 531 GLFQEAEAIFSRMSNNAGIQKSKDSFDALIE-AYCQGSRLDDAVKAYMEMRKSRFNPDER 589

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 357
            L  ++  Y  A   D+       L      P       +L++  +  +  +   L+E +
Sbjct: 590 SLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 649

Query: 358 E--KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNL 413
           +  +++S    +  L+  E D   +++     L NS  +  D    + N L+ +      
Sbjct: 650 KTNRASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQ 709

Query: 414 LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEE 473
              A ++L+  +   ++ ++   +   WSL +  +S+G AL A+ +W+N L   L   E+
Sbjct: 710 KGRAARVLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDED 769

Query: 474 FPPLLGINTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 510
            P L  +    G+ + S   +GL  A V  S L + L+A FH
Sbjct: 770 LPQLASVVVLRGEMEKSTVTRGLPIAKVVYSFLNDTLSASFH 811



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 6/240 (2%)

Query: 103 EMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           +M  GL+   R++     R D   ++TL+         D    +   M   GV P+ ++Y
Sbjct: 252 DMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSY 311

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +++D    A    +   ++ EM   G + + + Y  L+ A+ R     D ++V R+M+ 
Sbjct: 312 RHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQA 371

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +   Y  LL +    G  D   ++F +M+++    PD+ T++ +  +    G   
Sbjct: 372 DGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA--VPPDTATYNVLFRVFGDGGFFK 429

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCL 338
           E   +F++ML+ G +P++    +++   G      D    L  +   G+ P  D + G +
Sbjct: 430 EVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLV 489



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW----QVKTI 178
           ++++LI  Y      +    + ++MKA GV P   TYN +L    RA  P      +  +
Sbjct: 198 SYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGL 257

Query: 179 YKEMTDNG---LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + EM  +    + P+  TY +LL A       + +  +   M E G+      Y  ++  
Sbjct: 258 FAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDA 317

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            A  G    A E+F +M ++ +   D+  +  ++   +  G  ++A A+  +M   G  P
Sbjct: 318 FASAGNLSRAAELFSEMAATGHT-ADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAP 376

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
                  L+  YG+  R D  VR L R     + PD      L  V
Sbjct: 377 TAATYRVLLDLYGRQGRFDG-VRQLFREMRTAVPPDTATYNVLFRV 421


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G V  A  L D  +      D   ++  I  +G AGN D     + E+KA G+KP+ 
Sbjct: 225 AREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDD 284

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++Y +++  + +A R  + + ++ +M      P    Y +++  YG A   ED   +   
Sbjct: 285 VSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLER 344

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++E+G   SV  +N++L         DEA  +FE MK  ++ +P+S T++ +I +    G
Sbjct: 345 LRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK--KDAEPNSSTYNIIIDMLCLGG 402

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +V EA  + +EM  A   PNL  +  ++    KA++ ++  +      + G  PD
Sbjct: 403 RVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPD 457



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 132/262 (50%), Gaps = 5/262 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A+ L+++  +     +P  +++LI+ +   G  +    +++E+   G KP++ 
Sbjct: 470 KKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLT 529

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + I++++   G  P+  +Y+ L+    +A    +T +++  M
Sbjct: 530 LLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM 589

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRG 276
           K++G  L    YN ++      G   +A+EI E+MK  E C QP   T+ +++   +   
Sbjct: 590 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK--EKCVQPTVATYGAIVDGLAKID 647

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ EA  +F E    G E N+ + +SLI  +GK  R D+    L  + + G+TP+     
Sbjct: 648 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 707

Query: 337 CLLNVMTQTPKEELGKLVECVE 358
            LL+ + +   EE+ + + C +
Sbjct: 708 SLLDALVKA--EEINEALVCFQ 727



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 111/236 (47%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+AG       ++   + + + +D  A++ ++  +  +G       + EEMK   V+P +
Sbjct: 574 TKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTV 633

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  ++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   +  E
Sbjct: 634 ATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEE 693

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           M +KG+  +V  +N+LL         +EA   F+ MK  + C P+++T+S +I  +C  +
Sbjct: 694 MMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK-CPPNTYTYSILINGLCRVQ 752

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + +M + G  PN+   T++I    K     D      R    G  PD
Sbjct: 753 -KYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 807



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 1/197 (0%)

Query: 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
           A   D  +     M+ +  +P    Y  L+  +  A+RP +   + ++M + G     + 
Sbjct: 157 ARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHL 216

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           + +L+RA  R     D L++  E+K   ++  + LYN  +      G  D A++ F ++K
Sbjct: 217 FTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELK 276

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
            ++  +PD  +++SMI +    G++ EAE +F +M      P  +   ++I  YG A R 
Sbjct: 277 -AQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRF 335

Query: 314 DDVVRALNRLPELGITP 330
           +D  + L RL E G  P
Sbjct: 336 EDAYKLLERLRERGCIP 352



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A+++   ++   +S+LI  +G  G  D    + EEM   G+ PN+ T+N+LLD
Sbjct: 652 AYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLD 711

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M +    PN  TY+ L+    R +        +++M+++G+  
Sbjct: 712 ALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVP 771

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  Y T+++  A VG   +A+ +FE  K++    PD+ +F+++I   S   +  EA  +
Sbjct: 772 NVVTYTTMISGLAKVGNITDAYSLFERFKANGGI-PDAASFNALIEGMSNANRAMEAYQV 830

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           F E    G   N+    SL+    K++
Sbjct: 831 FEETRLRGCRINIKSCISLLDALNKSE 857



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 94/205 (45%), Gaps = 1/205 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R  K+R   +A++ LI     A   +  L +  +M+ +G +  +  +  L+  + R  + 
Sbjct: 171 RRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQV 230

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                +  E+  + L P+   Y   +  +G+A   +     + E+K +G++     Y ++
Sbjct: 231 ADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSM 290

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           + +    G   EA E+F  M+ +E   P ++ +++MI      G+  +A  +   + E G
Sbjct: 291 IWVLCKAGRLGEAEELFAQME-AERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERG 349

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVV 317
             P++    S++ C GK ++ D+ +
Sbjct: 350 CIPSVVSFNSILTCLGKKRKVDEAL 374



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 1/158 (0%)

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
           ++ + +EM   G        A L  A  RAR  +D +     M+    + + + Y  L+ 
Sbjct: 128 LEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIG 187

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
             A+    + A E+   M+     +     F++++   +  G+V++A A+ +E+  +  E
Sbjct: 188 ALAEARRPERALELLRQMQEV-GYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLE 246

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           P++ +    I C+GKA   D   +  + L   G+ PDD
Sbjct: 247 PDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDD 284



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           +K  + PN   ++T+I      GN     +++E  KA G  P+  ++N L++ M  A R 
Sbjct: 765 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRA 824

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +   +++E    G   N  +  SLL A  ++   E    V   ++E
Sbjct: 825 MEAYQVFEETRLRGCRINIKSCISLLDALNKSECLEQAAIVGAVLRE 871


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 123/250 (49%), Gaps = 4/250 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A+  Y   + E  + D    + +I   G AG  D  L ++EEM      PN++
Sbjct: 312 KAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVV 371

Query: 158 TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +  +K R  +V + ++ M  +G+SP+  TY+ L+  + +    E  + +  E
Sbjct: 372 TYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEE 431

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCR 275
           M EKG       Y +L+         D A E+F+++K  ENC   S   ++ MI      
Sbjct: 432 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK--ENCGSSSARVYAVMIKHLGKA 489

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G++ +A  +F+EM + G  PN++   +L+    +A   D+ +  + ++ E G  PD    
Sbjct: 490 GRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSY 549

Query: 336 GCLLNVMTQT 345
             +LN + +T
Sbjct: 550 NIILNGLAKT 559



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 115/226 (50%), Gaps = 11/226 (4%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           + P   S +I++ G A      + ++ ++KA   +P    YN+++  +    +  +V  +
Sbjct: 157 VTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHEL 216

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           Y EM++ G   P+  TY++L+ A+ +    +  + +  EMKE GMQ +  +Y  ++++  
Sbjct: 217 YNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFF 276

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            +     A  +FE+M+    C+PD +T++ +I      G++ EA   ++EM     +P+ 
Sbjct: 277 KLDNVHGALSLFEEMRYM-YCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDT 335

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            V+ ++I   GKA R DD    L    E+G++       C+ NV+T
Sbjct: 336 VVMNNMINFLGKAGRLDD---GLKLFEEMGVS------HCIPNVVT 372



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 2/229 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L +  +    +     ++ +I L+    N  G L+++EEM+ +  +P++ 
Sbjct: 242 KLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVF 301

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +G+A R  +    Y EM      P+     +++   G+A   +D L ++ EM
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM 361

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
                  +V  YNT++ A+        E F  FE MK S    P  +T+S +I       
Sbjct: 362 GVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGS-GISPSPFTYSILIDGFCKTN 420

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++ +A  +  EM E GF P      SLI   GKA+R D        L E
Sbjct: 421 RIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 1/215 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   +E A  L +    + +   P A+ +LI   G A  +D    +++E+K      +  
Sbjct: 418 KTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSAR 477

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++  +G+A R      ++ EM+  G +PN   Y +L+    RA   ++ L+  R+M
Sbjct: 478 VYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKM 537

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G    +  YN +L   A  G    A E+  +MK+S   +PD+ +++++++  S  G 
Sbjct: 538 QEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNS-TIKPDAVSYNTVLSALSHAGM 596

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
             EA  +  EM   GFE +L   +S+++  GK  +
Sbjct: 597 FEEAAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 128/299 (42%), Gaps = 6/299 (2%)

Query: 100 GNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G  E    LY+   NE     D   +S LI  +   G  D  + +  EMK  G++P    
Sbjct: 208 GQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKI 267

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  ++    +        ++++EM      P+  TY  L+R  G+A   ++    Y EM+
Sbjct: 268 YTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQ 327

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGK 277
            +  +    + N ++      G  D+  ++FE+M  S +C P+  T++++I  +   + +
Sbjct: 328 REDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS-HCIPNVVTYNTIIKALFESKSR 386

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSE  + F  M  +G  P+ F  + LI  + K  R +  +  L  + E G  P       
Sbjct: 387 VSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCS 446

Query: 338 LLNVMTQTPKEELG--KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
           L++ + +  + +L      E  E   S    V  ++++     G    +A  LF+ +SK
Sbjct: 447 LIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL-DDAINLFDEMSK 504



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
           + ++R  G A+     ++++ ++K +  Q +   YN+++ M    G  ++  E++ +M +
Sbjct: 163 SQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSN 222

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             +C PD+ T+S++I+     G+   A  + NEM E G +P   + T +I  + K    D
Sbjct: 223 EGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFK---LD 279

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +V  AL+   E+      R+  C  +V T T
Sbjct: 280 NVHGALSLFEEM------RYMYCRPDVFTYT 304


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 116/228 (50%), Gaps = 1/228 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A G+ +     +       +++++  Y   GN    L V++ +K  G++P ++
Sbjct: 274 KAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVV 333

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN+LL  + +A++    + +  EM  NG+ PN  +Y +L   Y RA   E    +++ M
Sbjct: 334 SYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRM 393

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K++ + + +  Y  LL  C   G    A E+F+ +  +   + +  T+ +M+   + +G+
Sbjct: 394 KKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDA-GLKHNRITYCTMLDGWARKGE 452

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           +S+A  + N+M + GF  +    TS I+   ++  T++V   L  + E
Sbjct: 453 LSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMRE 500



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 114/236 (48%), Gaps = 1/236 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+E    L  +   E ++ +   ++T++  +    + + CL+ +  +KA G+ P   
Sbjct: 134 QAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAA 193

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++    +A    +   I +EM  +G+SPN   YA ++  Y R         V+ +M
Sbjct: 194 TYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDM 253

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++  + +YN L+      G  D+A  + E+++++    P   T++S++      G 
Sbjct: 254 VSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANR-LLPTIETYTSILDGYVKGGN 312

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           + +A  +F+ +  AG  P +    SL+    KA++ ++    LN +   G+ P++R
Sbjct: 313 IQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNER 368



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 1/193 (0%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           KP +  Y  L+D   R       +  ++ M  + + PN + Y SL+ AY  AR  E  ++
Sbjct: 14  KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 73

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
              EM  +G+QL+  ++ ++++  A  G  + A   FE  K +EN  P    ++S++   
Sbjct: 74  CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK-AENLVPGGIVYNSIVQAY 132

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              G +   EA+  +M E GF+ NL + T+++  + + +  +  +   +RL   G++P  
Sbjct: 133 CQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTA 192

Query: 333 RFCGCLLNVMTQT 345
              GC++ + T+ 
Sbjct: 193 ATYGCIVKLFTKA 205



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 106/232 (45%), Gaps = 1/232 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A ++E A    +   ++  +++   F ++I  Y +AGN +   + +E+ KA  + P  I 
Sbjct: 65  ARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIV 124

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN+++    +A     V+ +  +M + G   N   Y ++L  +   R  E  LS +  +K
Sbjct: 125 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK 184

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G+  +   Y  ++ +    G   +A +I E+M       P+   ++ ++   +  G  
Sbjct: 185 ACGLSPTAATYGCIVKLFTKAGNMAKALDILEEM-DKHGVSPNKMIYAMIMDGYARGGDF 243

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + A  ++ +M+ AG +P++ +   L+  + KA R D  +  L  +    + P
Sbjct: 244 TAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLP 295



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 114/272 (41%), Gaps = 40/272 (14%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           T+AGN+  A  + +    +K  + PN   ++ ++  Y   G+F     V+E+M + G+KP
Sbjct: 203 TKAGNMAKALDILEEM--DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKP 260

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++ YN L+    +A R  +   + + +  N L P   TY S+L  Y +    +  L V+
Sbjct: 261 DIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVF 320

Query: 215 REMKEKGMQLSVTLYNTLLAMCAD-----------------------------------V 239
             +K  G++  V  YN+LL+  A                                     
Sbjct: 321 DRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARA 380

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++AF +F+ MK  EN   D   + +++  C   G +  A  +F ++ +AG + N   
Sbjct: 381 GDVEKAFGMFQRMK-KENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRIT 439

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +++  + +          LN + + G   D
Sbjct: 440 YCTMLDGWARKGELSKARDLLNDMQKHGFHLD 471



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 1/166 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG+VE AFG++ R + E   ID  A+  L+K    +G       V++++   G+K N 
Sbjct: 378 ARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNR 437

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITY  +LD   R     + + +  +M  +G   +   Y S ++A  R+   E+       
Sbjct: 438 ITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAV 497

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           M+EK ++++   Y TL+         D+A   +E  K+S   Q DS
Sbjct: 498 MREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKAS-GLQLDS 542



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 133/309 (43%), Gaps = 22/309 (7%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           +  R G+   A   ++  R    + + + +++LI  Y  A + +G +   EEM + G++ 
Sbjct: 26  FYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQL 85

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N   + +++     A      +  +++     L P    Y S+++AY +A   E   ++ 
Sbjct: 86  NEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALL 145

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M+E+G Q ++ LY T+L   A++   ++    F  +K+     P + T+  ++ + + 
Sbjct: 146 AQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKAC-GLSPTAATYGCIVKLFTK 204

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--- 331
            G +++A  +  EM + G  PN  +   ++  Y +        +    +   G+ PD   
Sbjct: 205 AGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVI 264

Query: 332 -----DRFC--GCLLNVMTQTPKEELGKLVECVEKSNSKL-GYVVKLLLEEQDIEGDFKK 383
                  FC  G +   +      E  +L+  +E   S L GYV          +G   +
Sbjct: 265 YNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYV----------KGGNIQ 314

Query: 384 EATELFNSI 392
           +A E+F+ I
Sbjct: 315 KALEVFDRI 323



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN  +++ L + Y  AG+ +    +++ MK   +  +++ Y  LL    ++    +  
Sbjct: 363 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAA 422

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +++++TD GL  N  TY ++L  + R         +  +M++ G  L    Y + +  C
Sbjct: 423 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKAC 482

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
              G T+E  E    M+  +  + ++ T++++I
Sbjct: 483 FRSGDTEEVTETLAVMR-EKKLEVNARTYTTLI 514


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 118/232 (50%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V  A  L+ + R +  + +   ++ L+     AG  D  L +  EM   GV  N++TY
Sbjct: 313 GMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTY 372

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+D + +  +  + + +++ M   G+  N   Y +L+  +   +  E  LS+  EMK+
Sbjct: 373 TVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKD 432

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KGM+L V+LY  L+    ++   DEA  +   M      +P++  +++++  C    K S
Sbjct: 433 KGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDEC-GLKPNNVIYTNIMDACFKARKES 491

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA A+  +M+++GF PN+    +L+    KA   D+ +   N++ +LG+ P+
Sbjct: 492 EAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPN 543



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 13/238 (5%)

Query: 96  DTRAGNVEMAFGLYDRARNEKWRI-----DPNAFS--TLIKLYGTAGNFDGCLNVYEEMK 148
           +TR  N  +     +R+    WR+      PN F+   +I      G+      +   MK
Sbjct: 162 NTRTCNHILLCLARERSSELAWRLFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMK 221

Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
           AIG  P+++TYN+L+D  G+     +V+ +  EM   G  P+  TY +L+  + +    E
Sbjct: 222 AIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRME 281

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
              S + EMK +G+  +V  ++T + A C + G   EA ++F  M+  +  +P+  T++ 
Sbjct: 282 RAYSYFAEMKREGVMANVVTFSTFVDAFCKN-GMVREAMKLFAQMR-MKGMKPNEVTYTC 339

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNR 322
           ++      G++ +A  + NEM++ G   N+   T L+      GK    +DV R + R
Sbjct: 340 LVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMER 397



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 114/240 (47%), Gaps = 1/240 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N E A  L    +++   +D + +  LI         D   ++  +M   G+KPN + Y 
Sbjct: 419 NSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYT 478

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           N++D   +A++  +   + ++M D+G  PN  TY +L+    +A   ++ +S + +M + 
Sbjct: 479 NIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDL 538

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++ +V  Y  L+      G  D+A  + ++M   +    D+   +S++     +G + +
Sbjct: 539 GLEPNVQAYTALVDGLCKNGRLDKAVLLLDEM-IDKGMSLDNVVCTSLMDGHLKQGNLQD 597

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A A+  +M+ +G + +L+  T  +  +       +    L+ + E GITPD     CL+N
Sbjct: 598 AFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLIN 657



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 125/270 (46%), Gaps = 6/270 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++  A  L  R +      D   +++LI  YG  G  +    +  EM+  G +P+++
Sbjct: 206 KEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVV 265

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   +  R  +  + + EM   G+  N  T+++ + A+ +     + + ++ +M
Sbjct: 266 TYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQM 325

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + KGM+ +   Y  L+      G  D+A  +  +M   +    +  T++ ++      GK
Sbjct: 326 RMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEM-VQQGVPLNVVTYTVLVDGLCKEGK 384

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V+EAE +F  M  AG   N  + T+LI  +   + ++  +  L+ + + G+  D    G 
Sbjct: 385 VAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGA 444

Query: 338 LLNVMTQTPKEE-----LGKLVECVEKSNS 362
           L+  +    K +     L K+ EC  K N+
Sbjct: 445 LIWGLCNLQKLDEAKSLLNKMDECGLKPNN 474



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 41/256 (16%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR---PWQV-- 175
           P+   TL+ L    G  D  +     ++ + V PN  T N++L  + R +     W++  
Sbjct: 128 PSVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFE 187

Query: 176 --------------------------KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
                                     + +   M   G SP+  TY SL+  YG+    E+
Sbjct: 188 QLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEE 247

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
              +  EM+  G +  V  YN L+      G  + A+  F +MK  E    +  TFS+ +
Sbjct: 248 VEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMK-REGVMANVVTFSTFV 306

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G V EA  +F +M   G +PN    T L+    KA R DD +   N + + G+ 
Sbjct: 307 DAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVP 366

Query: 330 PDDRFCGCLLNVMTQT 345
                    LNV+T T
Sbjct: 367 ---------LNVVTYT 373



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L  +  +  +R +   +  L+     AG+ D  ++ + +M  +G++PN+  Y  L+D
Sbjct: 493 AIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVD 552

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +  R  +   +  EM D G+S +     SL+  + +    +D  ++  +M   G+QL
Sbjct: 553 GLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQL 612

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            +  Y   +    ++    EA E+  +M  +    PD+  ++ +I  C   G + EA  +
Sbjct: 613 DLYGYTCFVWGFCNLNMIQEAREVLSEMIEN-GITPDAVVYNCLINKCQKLGNMEEAAIL 671

Query: 285 FNEM 288
            NEM
Sbjct: 672 QNEM 675


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 123/250 (49%), Gaps = 4/250 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A+  Y   + E  + D    + +I   G AG  D  L ++EEM      PN++
Sbjct: 312 KAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVV 371

Query: 158 TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +  +K R  +V + ++ M  +G+SP+  TY+ L+  + +    E  + +  E
Sbjct: 372 TYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEE 431

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCR 275
           M EKG       Y +L+         D A E+F+++K  ENC   S   ++ MI      
Sbjct: 432 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK--ENCGSSSARVYAVMIKHLGKA 489

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G++ +A  +F+EM + G  PN++   +L+    +A   D+ +  + ++ E G  PD    
Sbjct: 490 GRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSY 549

Query: 336 GCLLNVMTQT 345
             +LN + +T
Sbjct: 550 NIILNGLAKT 559



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 116/226 (51%), Gaps = 11/226 (4%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           + P   S +I++ G A      + ++ ++KA   +P    YN+++  +    +  +V  +
Sbjct: 157 VTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHEL 216

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           Y EM++ G   P+  TY++L+ A+ +    +  + +  EMKE GMQ +  +Y  ++++  
Sbjct: 217 YNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFF 276

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            +     A  +FE+M+    C+PD +T++ +I      G++ EA   ++EM   G +P+ 
Sbjct: 277 KLDNVHGALSLFEEMRYM-YCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDT 335

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            V+ ++I   GKA R DD    L    E+G++       C+ NV+T
Sbjct: 336 VVMNNMINFLGKAGRLDD---GLKLFEEMGVS------HCIPNVVT 372



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 2/229 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L +  +    +     ++ +I L+    N  G L+++EEM+ +  +P++ 
Sbjct: 242 KLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVF 301

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +G+A R  +    Y EM   G  P+     +++   G+A   +D L ++ EM
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM 361

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
                  +V  YNT++ A+        E F  FE MK S    P  +T+S +I       
Sbjct: 362 GVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGS-GISPSPFTYSILIDGFCKTN 420

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++ +A  +  EM E GF P      SLI   GKA+R D        L E
Sbjct: 421 RIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 6/299 (2%)

Query: 100 GNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G  E    LY+   NE   + D   +S LI  +   G  D  + +  EMK  G++P    
Sbjct: 208 GQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKI 267

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  ++    +        ++++EM      P+  TY  L+R  G+A   ++    Y EM+
Sbjct: 268 YTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQ 327

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGK 277
            +G +    + N ++      G  D+  ++FE+M  S +C P+  T++++I  +   + +
Sbjct: 328 REGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS-HCIPNVVTYNTIIKALFESKSR 386

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VSE  + F  M  +G  P+ F  + LI  + K  R +  +  L  + E G  P       
Sbjct: 387 VSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCS 446

Query: 338 LLNVMTQTPKEELG--KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
           L++ + +  + +L      E  E   S    V  ++++     G    +A  LF+ +SK
Sbjct: 447 LIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL-DDAINLFDEMSK 504



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 1/215 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   +E A  L +    + +   P A+ +LI   G A  +D    +++E+K      +  
Sbjct: 418 KTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSAR 477

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++  +G+A R      ++ EM+  G +PN   Y +L+    RA   ++ L+  R+M
Sbjct: 478 VYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKM 537

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G    +  YN +L   A  G    A E+  +MK+S   +PD+ +++++++  S  G 
Sbjct: 538 QEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNS-TIKPDAVSYNTVLSALSHAGM 596

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
             EA  +  EM   GFE +L   +S+++  GK  +
Sbjct: 597 FEEAAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 77/151 (50%), Gaps = 9/151 (5%)

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
           + ++R  G A+     ++++ ++K +  Q +   YN+++ M    G  ++  E++ +M +
Sbjct: 163 SQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSN 222

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             +CQPD+ T+S++I+     G+   A  + NEM E G +P   + T +I  + K    D
Sbjct: 223 EGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFK---LD 279

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +V  AL+   E+      R+  C  +V T T
Sbjct: 280 NVHGALSLFEEM------RYMYCRPDVFTYT 304


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 128/276 (46%), Gaps = 13/276 (4%)

Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196
           F+   ++ ++M+  GVK ++ T N L+   G   R   +   +      GL  N  +Y  
Sbjct: 140 FEQTESLLDDMEKRGVKGSISTVNILIGFFGDLDRCVGLVKKW------GLRFNAYSYKC 193

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           LL+ Y R R  +    VY +M   G  L +  +N LL   A     D+A+++FEDMK   
Sbjct: 194 LLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKR-R 252

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           +C+PD++T++ MI +    GK  E+ A+F  MLE GF  NL    ++I+   K +  D  
Sbjct: 253 HCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKA 312

Query: 317 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 376
           V   +++ E G  P++     LLNV+    + +L KL   VE S   +   +        
Sbjct: 313 VLLFSKMVENGCQPNEFTYSVLLNVL--VAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTL 370

Query: 377 IEGDFKKEATELF----NSISKDVKKAYCNCLIDLC 408
            +     EA  LF    N   K  K AY + L  LC
Sbjct: 371 SKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLC 406



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 129/272 (47%), Gaps = 7/272 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G+   A  L+    N   + D +A+ ++++   ++G     +++        +  + 
Sbjct: 371 SKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDT 430

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I YN +   +GR K+   +  +Y++M  +G  P+  TY  L+ +YGRA   +  + ++ E
Sbjct: 431 IMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEE 490

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++    Q  V  YN+L+      G  DEA   F++M+  +   PD  T+S++I       
Sbjct: 491 LENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQ-EKGLNPDVVTYSTLIECFGKTD 549

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           KV  A ++F+EM+  G  PNL     L+ C  ++ RT + V    +L + G+TPD     
Sbjct: 550 KVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD----S 605

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVV 368
               V+ +      GKL   V + N   G+VV
Sbjct: 606 ITYAVLERLQSGRHGKLR--VRRQNPITGWVV 635



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 95/181 (52%), Gaps = 5/181 (2%)

Query: 106 FGLYDRARN--EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           FG  DR     +KW +  NA+S   L++ Y    + D    VY +M   G   ++  +N 
Sbjct: 169 FGDLDRCVGLVKKWGLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNM 228

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LLD + + ++  +   ++++M      P+  TY  ++R  G+A   +++L++++ M EKG
Sbjct: 229 LLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKG 288

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             L++  YNT++   A     D+A  +F  M  +  CQP+ +T+S ++ +    G++++ 
Sbjct: 289 FTLNLIAYNTMIEALAKGRMADKAVLLFSKMVEN-GCQPNEFTYSVLLNVLVAEGQLNKL 347

Query: 282 E 282
           +
Sbjct: 348 D 348



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 108/256 (42%), Gaps = 12/256 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  + + AFG+Y       + +D  AF+ L+         D    V+E+MK    +P+  
Sbjct: 200 RLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTF 259

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++   G+A +  +   +++ M + G + N   Y +++ A  + R  +  + ++ +M
Sbjct: 260 TYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKM 319

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G Q +   Y+ LL +    G  ++   I E  K   N Q     ++  +   S  G 
Sbjct: 320 VENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQ----IYAYFVRTLSKLGH 375

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            SEA  +F  M     + +     S+++    + +  + +  LNR  E  IT D      
Sbjct: 376 SSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTD------ 429

Query: 338 LLNVMTQTPKEELGKL 353
              +M  T    LG+L
Sbjct: 430 --TIMYNTVFTALGRL 443


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 124/261 (47%), Gaps = 5/261 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G    A  L++  R         A++ L+K Y   G+      V  EM+  GVKP+  T
Sbjct: 305 SGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQT 364

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ L+D    A R    + + KEM  + + PN   Y+ +L +Y      + +  V ++MK
Sbjct: 365 YSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMK 424

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
             G+Q     YN ++         D A   FE M  SE  +PD+ T++++I  C C+ G+
Sbjct: 425 SNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERML-SEGIRPDTVTWNTLIN-CHCKSGR 482

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            + AE +F EM + G+ P +     +I   G+ QR + V   L+++   G+ P+      
Sbjct: 483 HNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTT 542

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           L++V  ++ +      +EC+E
Sbjct: 543 LVDVYGKSGR--FSDAIECLE 561



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 4/249 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A   ++R  +E  R D   ++TLI  +  +G  +    ++ EM+  G  P + TYN 
Sbjct: 448 LDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNI 507

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++++MG  +R  QV     +M   GL PN  TY +L+  YG++    D +     +K  G
Sbjct: 508 MINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTG 567

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            + + T+YN L+   A  G ++ A   F  M ++E   P     +S+I       + +EA
Sbjct: 568 FKPTSTMYNALINAYAQRGLSELAVNAFRLM-TTEGLTPSLLALNSLINAFGEDRRDAEA 626

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL--- 338
            A+   M E   EP++   T+L++   + ++   V      +   G TPD +    L   
Sbjct: 627 FAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTPDRKARAMLRSA 686

Query: 339 LNVMTQTPK 347
           L  M QT K
Sbjct: 687 LRYMKQTLK 695



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 113/248 (45%), Gaps = 1/248 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  + +F +    ++   + D + ++ +I  +G     D  +  +E M + G++P+ +T+
Sbjct: 411 GEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTW 470

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++   ++ R    + ++ EM   G SP   TY  ++ + G  +  E       +M+ 
Sbjct: 471 NTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQS 530

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+  +   Y TL+ +    G   +A E  E +KS+   +P S  ++++I   + RG   
Sbjct: 531 QGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKST-GFKPTSTMYNALINAYAQRGLSE 589

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A   F  M   G  P+L  L SLI  +G+ +R  +    L  + E  I PD      L+
Sbjct: 590 LAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLM 649

Query: 340 NVMTQTPK 347
             + +  K
Sbjct: 650 KALIRVEK 657



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 114/248 (45%), Gaps = 3/248 (1%)

Query: 95  YDTRAGNVEMAF--GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           Y TR+  ++      LY     +K  ID +  + +I  +  AG+    +      ++ G+
Sbjct: 229 YLTRSNKIDSPILQKLYTEIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGL 288

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            P   T   ++  +G + R  + + +++E+ +NG  P    Y +LL+ Y +    +D   
Sbjct: 289 NPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEF 348

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           V  EM++ G++     Y+ L+   A  G  + A  + ++M++S N +P+S+ +S ++   
Sbjct: 349 VVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEAS-NVEPNSYVYSRILASY 407

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             +G+  ++  +  +M   G +P+      +I  +GK    D  +    R+   GI PD 
Sbjct: 408 RDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDT 467

Query: 333 RFCGCLLN 340
                L+N
Sbjct: 468 VTWNTLIN 475



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 123/284 (43%), Gaps = 19/284 (6%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRAR-----NEKWRIDPNA 123
           KTGS   +   V+       K  E++Y         A G ++ AR      E   ++PN+
Sbjct: 339 KTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHA-GRWESARIVLKEMEASNVEPNS 397

Query: 124 F--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +  S ++  Y   G +     V ++MK+ GV+P+   YN ++DT G+          ++ 
Sbjct: 398 YVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFER 457

Query: 182 MTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           M   G+ P+   WNT  +     GR    E+   ++ EM+++G    +T YN    M   
Sbjct: 458 MLSEGIRPDTVTWNTLINCHCKSGRHNMAEE---LFGEMQQRGYSPCITTYNI---MINS 511

Query: 239 VGYTD--EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           +G     E   +F     S+   P+S T+++++ +    G+ S+A      +   GF+P 
Sbjct: 512 MGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPT 571

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +  +LI  Y +   ++  V A   +   G+TP       L+N
Sbjct: 572 STMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLIN 615



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 7/282 (2%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL--SVY 214
           +TYN L+    R     +   +  +M  +G  P++  Y+S+++   R+   +  +   +Y
Sbjct: 186 LTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLY 245

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            E++   +++   L N ++   +  G    A   F  M  S    P   T  ++I     
Sbjct: 246 TEIETDKIEIDGHLMNDIILGFSKAGDPTRAMR-FLAMAQSNGLNPKPSTLVAVILALGN 304

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+  EAEA+F E+ E G EP      +L++ Y K     D    ++ + + G+ PD++ 
Sbjct: 305 SGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQT 364

Query: 335 CGCLLNVMTQTPKEELGKLV-ECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSI 392
              L++      + E  ++V + +E SN +   YV   +L     +G+++K    L +  
Sbjct: 365 YSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMK 424

Query: 393 SKDVK--KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432
           S  V+  + + N +ID     N L++A    E  L+  +  D
Sbjct: 425 SNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPD 466



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G   MA  L+   +   +      ++ +I   G    ++       +M++ G+ PN I
Sbjct: 479 KSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSI 538

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  G++ R        + +   G  P    Y +L+ AY +    E  ++ +R M
Sbjct: 539 TYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLM 598

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+  S+   N+L+    +     EAF + + MK + N +PD  T+++++       K
Sbjct: 599 TTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKEN-NIEPDVVTYTTLMKALIRVEK 657

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +  A++ EM+ +G  P+
Sbjct: 658 FQKVPAVYEEMVTSGCTPD 676


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G V  A  L D  +      D   ++  I  +G AGN D     + E+KA G+KP+ 
Sbjct: 91  AREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDD 150

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++Y +++  + +A R  + + ++ +M      P    Y +++  YG A   ED   +   
Sbjct: 151 VSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLER 210

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++E+G   SV  +N++L         DEA  +FE MK  ++ +P+S T++ +I +    G
Sbjct: 211 LRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK--KDAEPNSSTYNIIIDMLCLGG 268

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +V EA  + +EM  A   PNL  +  ++    KA++ ++  +      + G  PD
Sbjct: 269 RVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPD 323



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 132/262 (50%), Gaps = 5/262 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A+ L+++  +     +P  +++LI+ +   G  +    V++E+   G KP++ 
Sbjct: 336 KKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLT 395

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + I++++   G  P+  +Y+ L+    +A    +T +++  M
Sbjct: 396 LLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM 455

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRG 276
           K++G  L    YN ++      G   +A+EI E+MK  E C QP   T+ +++   +   
Sbjct: 456 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK--EKCVQPTVATYGAIVDGLAKID 513

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ EA  +F E    G E N+ + +SLI  +GK  R D+    L  + + G+TP+     
Sbjct: 514 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 573

Query: 337 CLLNVMTQTPKEELGKLVECVE 358
            LL+ + +   EE+ + + C +
Sbjct: 574 SLLDALVKA--EEINEALVCFQ 593



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 111/236 (47%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+AG       ++   + + + +D  A++ ++  +  +G       + EEMK   V+P +
Sbjct: 440 TKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTV 499

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  ++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   +  E
Sbjct: 500 ATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEE 559

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           M +KG+  +V  +N+LL         +EA   F+ MK  + C P+++T+S +I  +C  +
Sbjct: 560 MMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK-CPPNTYTYSILINGLCRVQ 618

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + +M + G  PN+   T++I    K     D      R    G  PD
Sbjct: 619 -KYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 673



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 1/184 (0%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           M+ +  +P    Y  L+  +  A+RP +   + ++M + G     + + +L+RA  R   
Sbjct: 36  MRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQ 95

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
             D L++  E+K   ++  + LYN  +      G  D A + F ++K ++  +PD  +++
Sbjct: 96  VADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELK-AQGLKPDDVSYT 154

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           SMI +    G++ EAE +F +M      P  +   ++I  YG A R +D  + L RL E 
Sbjct: 155 SMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRER 214

Query: 327 GITP 330
           G  P
Sbjct: 215 GCIP 218



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 95/177 (53%), Gaps = 1/177 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A+++   ++   +S+LI  +G  G  D    + EEM   G+ PN+ T+N+LLD
Sbjct: 518 AYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLD 577

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M +    PN  TY+ L+    R +        +++M+++G+  
Sbjct: 578 ALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVP 637

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +V  Y T+++  A VG   +A+ +FE  K++    PD+ +F+++I   S   +  EA
Sbjct: 638 NVVTYTTMISGLAKVGNITDAYSLFERFKANGGI-PDAASFNALIEGMSNANRAMEA 693



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 113/251 (45%), Gaps = 5/251 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G VE A+ + D    E   + PN  +   ++     A   +    ++E     G  P+ 
Sbjct: 267 GGRVEEAYRILDEM--EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDC 324

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +L+D +G+  +  +   ++++M D G + N   Y SL+R +      ED   V++E
Sbjct: 325 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKE 384

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +  +G +  +TL NT +      G  ++   IFED++S     PD  ++S +I   +  G
Sbjct: 385 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY-GFLPDVRSYSILIHGLTKAG 443

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  E   +F+ M + GF  +     +++  + K+ +       L  + E  + P     G
Sbjct: 444 QARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYG 503

Query: 337 CLLNVMTQTPK 347
            +++ + +  +
Sbjct: 504 AIVDGLAKIDR 514



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/404 (19%), Positives = 177/404 (43%), Gaps = 31/404 (7%)

Query: 50  ETQSSNPTKHSQNPQY-PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNV 102
           E + S P  ++ N     +G  G    +Y  +     R       S+++      +   V
Sbjct: 177 EAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKV 236

Query: 103 EMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           + A  L++  + +    +PN+  ++ +I +    G  +    + +EM+   + PN++T N
Sbjct: 237 DEALSLFEVMKKDA---EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 293

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D + +A++  +   I++  +  G +P+  TY SL+   G+    ++   ++ +M + 
Sbjct: 294 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 353

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   +  +Y +L+      G  ++  ++F+++     C+PD    ++ +      G+V +
Sbjct: 354 GHNANPVVYTSLIRNFFIHGRKEDGHKVFKEL-IRRGCKPDLTLLNTYMDCVFKAGEVEK 412

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              +F ++   GF P++   + LI    KA +  +     + + + G   D R    +++
Sbjct: 413 GRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVD 472

Query: 341 VMTQTPK-----EELGKLVE-CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF---NS 391
              ++ K     E L ++ E CV+ + +  G +V  L +   ++     EA  LF    S
Sbjct: 473 GFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLD-----EAYMLFEEAKS 527

Query: 392 ISKDVKKAYCNCLIDLCVNLNLLENACKLLE----LGLTLEVYT 431
              ++     + LID    +  ++ A  +LE     GLT  VYT
Sbjct: 528 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 571



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 94/205 (45%), Gaps = 1/205 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R  K+R   +A++ LI     A   +  L +  +M+ +G +  +  +  L+  + R  + 
Sbjct: 37  RRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQV 96

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                +  E+  + L P+   Y   +  +G+A   +     + E+K +G++     Y ++
Sbjct: 97  ADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSM 156

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           + +    G   EA E+F  M+ +E   P ++ +++MI      G+  +A  +   + E G
Sbjct: 157 IWVLCKAGRLGEAEELFAQME-AERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERG 215

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVV 317
             P++    S++ C GK ++ D+ +
Sbjct: 216 CIPSVVSFNSILTCLGKKRKVDEAL 240



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 5/152 (3%)

Query: 116 KWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  + PN ++  +L+     A   +  L  ++ MK +   PN  TY+ L++ + R ++  
Sbjct: 562 KKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN 621

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +    +++M   GL PN  TY +++    +     D  S++   K  G       +N L+
Sbjct: 622 KAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALI 681

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
              ++     EA++      SS +C   SW F
Sbjct: 682 EGMSNANRAMEAYQTTVYQLSSSSC---SWNF 710


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 1/227 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+T+I  Y   G  D  L V   M+ +G++ ++ TYN L   + R  R  + KT+   M 
Sbjct: 310 FNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMI 369

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G+ PN+ TY +L+  + +     +   ++REM  KG   SV  YN ++      G   
Sbjct: 370 EKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIR 429

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA E F      +   PD +T++S++      GKV  A  +F EM   G EPN+   T+L
Sbjct: 430 EA-ERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTAL 488

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 350
           I    K  R+++  +  + + + G+TPDD     L+  +    ++++
Sbjct: 489 ISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTDNRKDI 535



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG++     + D  + +    D   ++ +I  Y  AGN      V++E    G++PN  T
Sbjct: 215 AGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERT 274

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L++   +  +    + +  +M   G+  N   + +++  Y R    ++ L V   M+
Sbjct: 275 YGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAME 334

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G++L V  YNTL      V    EA  +   M   +   P+  T++++I+I    G +
Sbjct: 335 KMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIM-IEKGVPPNYVTYTTLISIHCKEGDM 393

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EA  +F EM   G  P++     ++  Y K     +  R    + + G+ PD
Sbjct: 394 VEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPD 446



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 8/254 (3%)

Query: 99  AGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           AG +  A  +  RA       + P A S ++  +  +G  D    + +EM   GV+ N +
Sbjct: 109 AGQLADAAAILTRALGSCPGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNAL 168

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN+LLD   R K   +V+ + + M + G+     TY  L+ +   A       +V  EM
Sbjct: 169 CYNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEM 228

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K K +   V LY  ++      G    A E+F++   +   +P+  T+  +I      G+
Sbjct: 229 KAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGN-GIEPNERTYGVLINGFCKIGQ 287

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-----TPDD 332
           +  AE +  +M   G   N  +  ++I  Y +    D+ ++    + ++GI     T + 
Sbjct: 288 MEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNT 347

Query: 333 RFCG-CLLNVMTQT 345
             CG C +N M + 
Sbjct: 348 LACGLCRVNRMAEA 361



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 111 RARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           R   EK  + P+ +  ++L+  +   G  D  L ++EEMK  G +PN++ Y  L+  + +
Sbjct: 435 RKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAK 494

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
             R  +   +Y +M   GL+P+ + Y++L+
Sbjct: 495 EGRSEEAFQLYDDMLKAGLTPDDSLYSALV 524


>gi|413951888|gb|AFW84537.1| hypothetical protein ZEAMMB73_783984 [Zea mays]
          Length = 238

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 112/212 (52%), Gaps = 3/212 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN+  ++ LI  +  A      + +Y EM   G  P +ITYN L+D + +A++  +  ++
Sbjct: 8   PNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEKYQEASSL 67

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            KEM + G  P+  TY SL+R   R +  +  L ++ E+ + G+Q+ V ++N L+     
Sbjct: 68  TKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNILIHGLCS 127

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  ++AF I+ +MK  +NC P+  T+++++      G +  A +++  +L+ G +P++ 
Sbjct: 128 AGKVNDAFCIYLEMK-EKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDNGLKPDIV 186

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              + I+      RT + V  LN +   GI P
Sbjct: 187 TYNTRIKGLCSCNRTPEGVLLLNEVLATGIMP 218



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVG 240
           M  +G  PN + Y +L+  + RA    D + +Y EM   G   ++  YNTL+  +C    
Sbjct: 1   MMKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEK 60

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           Y  EA  + ++M      +PD  T+ S+I  +C  + K+  A  ++NE+L+AG + ++ V
Sbjct: 61  Y-QEASSLTKEML-ERGFKPDIRTYGSLIRGLCRVK-KIDAALCIWNEILDAGIQVDVIV 117

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              LI     A + +D       + E   +P+
Sbjct: 118 HNILIHGLCSAGKVNDAFCIYLEMKEKNCSPN 149



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   ++ A  +++   +   ++D    + LI    +AG  +    +Y EMK     PN++
Sbjct: 92  RVKKIDAALCIWNEILDAGIQVDVIVHNILIHGLCSAGKVNDAFCIYLEMKEKNCSPNLV 151

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D            +++  + DNGL P+  TY + ++         + + +  E+
Sbjct: 152 TYNTLMDGFYEIGSIDTAASLWAAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEV 211

Query: 218 KEKGMQLSVTLYNTLL 233
              G+  SV  ++ L+
Sbjct: 212 LATGIMPSVITWSILV 227



 Score = 42.0 bits (97), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG V  AF +Y   + +    +   ++TL+  +   G+ D   +++  +   G+KP+++T
Sbjct: 128 AGKVNDAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDTAASLWAAILDNGLKPDIVT 187

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
           YN  +  +    R  +   +  E+   G+ P+  T++ L+RA    RYG
Sbjct: 188 YNTRIKGLCSCNRTPEGVLLLNEVLATGIMPSVITWSILVRAV--IRYG 234


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 130/254 (51%), Gaps = 4/254 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G VE A+ ++     +  + D    + LI ++G AG  +  L ++++M+++   PN++
Sbjct: 283 KSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVV 342

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +  +K P  +  + +++M  NG++P+  TY+ L+  + +    E  L +  E
Sbjct: 343 TYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEE 402

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCR 275
           M EKG       Y +L+         + A E+F ++K  ENC +  +  ++ MI      
Sbjct: 403 MDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELK--ENCGRSSARIYAVMIKNLGKC 460

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G+ SEA  +FNEM + G  P+++   +L+    +A   ++   AL  + E G TPD    
Sbjct: 461 GRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSH 520

Query: 336 GCLLNVMTQTPKEE 349
             +LN + +T + E
Sbjct: 521 NIILNGLARTGRPE 534



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EM   + +  R+    I P   S ++K+ G A   +  L+V+ ++K+   KP   TYN++
Sbjct: 113 EMWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSM 172

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  + +     ++  +Y EM + G   P+  TY+ L+ A+ +    +  + ++ EMK  G
Sbjct: 173 ILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANG 232

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +  +  +Y TLLA+    G  ++A  + ++MK  + C P  +T++ +I      G+V +A
Sbjct: 233 LHPTAKIYTTLLAIYFKSG-DEKALGLVQEMK-DKGCAPTVFTYTELIKGLGKSGRVEDA 290

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++F  ML+ G +P++ ++ +LI  +GKA R +D ++  +++  L   P+
Sbjct: 291 YSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPN 340



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 10/286 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S L+  +   G  D  + +++EMKA G+ P    Y  LL    ++     +  + 
Sbjct: 201 DTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKALGLV- 259

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM D G +P   TY  L++  G++   ED  SV+  M + G +  V L N L+ +    
Sbjct: 260 QEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKA 319

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G  ++A ++F+ M+S + C P+  T++++I  +   +   SEA + F +M   G  P+ F
Sbjct: 320 GRLEDALKLFDQMRSLK-CAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSF 378

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK--LVEC 356
             + LI  + K  R +  +  L  + E G  P       L+N + +  + E      +E 
Sbjct: 379 TYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLEL 438

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCN 402
            E        +  ++++     G    EA +LFN    ++KK  CN
Sbjct: 439 KENCGRSSARIYAVMIKNLGKCGR-PSEAVDLFN----EMKKIGCN 479



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 3/259 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +AG +E A  L+D+ R+ K   +   ++T+IK L+ +        + +E+MKA GV P+ 
Sbjct: 318 KAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSS 377

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY+ L+D   +  R  +   + +EM + G  P    Y SL+ A G+A+  E    ++ E
Sbjct: 378 FTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLE 437

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +KE   + S  +Y  ++      G   EA ++F +MK    C PD + ++++++     G
Sbjct: 438 LKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKI-GCNPDVYAYNALMSGLVRAG 496

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + EA +    M E G  P+L     ++    +  R +       ++ +  I PD     
Sbjct: 497 MIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYN 556

Query: 337 CLLNVMTQTPK-EELGKLV 354
            +L  ++++   EE  KL+
Sbjct: 557 TILGSLSRSGMFEEAAKLM 575



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 1/218 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   VE A  L +    + +   P A+ +LI   G A  ++    ++ E+K    + +  
Sbjct: 389 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSAR 448

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++  +G+  RP +   ++ EM   G +P+   Y +L+    RA   E+  S  R M
Sbjct: 449 IYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTM 508

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G    +  +N +L   A  G  ++A E+F  MK S   +PD+ ++++++   S  G 
Sbjct: 509 EENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSL-IKPDAVSYNTILGSLSRSGM 567

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
             EA  +  EM   GFE +    +S+++  GK    D+
Sbjct: 568 FEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDDE 605


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 113/238 (47%), Gaps = 12/238 (5%)

Query: 106 FGLYDRARNEKW------------RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           F LY+  R   W             +D   F+  IK  G A  +   L V  EM+A G++
Sbjct: 199 FVLYNCMRRRDWTRALTVLDAPLIEVDVVGFTMAIKACGQARRWREALGVLREMQARGLR 258

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+++++N  +D +G+A +      ++ E+ D+G +PN  +Y + + A GRA   +    +
Sbjct: 259 PDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHEL 318

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            REM+   ++     YNT++A  A       A E+  +MK +    PD  ++++ + +C+
Sbjct: 319 LREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCA 378

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G+   A  +  E L  G +P++    +++   G+A      +     + E+G+ PD
Sbjct: 379 KAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPD 436



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 2/228 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A G+    +    R D  +F+T +   G AG +D  L ++ E++  G  PN+++YN  + 
Sbjct: 245 ALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAIH 304

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQ 223
             GRA    +   + +EM    + P+  +Y +++ A+ +    +  L +  EMKE  G+ 
Sbjct: 305 ACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVD 364

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
             +  YNT + +CA  G  + A E+  +    +  QPD  ++++++  C   G+  +A  
Sbjct: 365 PDLISYNTAMHVCAKAGRWERATELLTE-ALGQGLQPDVVSYNTVMHACGRAGEYLQALD 423

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +F  M E G  P+     + +    +A +    ++ L  +    I P+
Sbjct: 424 LFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAPN 471



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 112/247 (45%), Gaps = 3/247 (1%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           +DP+  +++T + +   AG ++    +  E    G++P++++YN ++   GRA    Q  
Sbjct: 363 VDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQAL 422

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++  M + G++P+  ++ + + A  RA   +  L + REM+ + +  +V  Y   +  C
Sbjct: 423 DLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVDAC 482

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  + A E+ E+M+       +  T+++ +  C   G V     +  EM   G EPN
Sbjct: 483 GRAGEWERALELMEEME-VRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPN 541

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
           +   T  +    +  + D     L ++ + G+  D       L+   +   EE  +L + 
Sbjct: 542 VVSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLDSVSYRTALSTAGRAGDEEGERLTKI 601

Query: 357 VEKSNSK 363
           V +S  +
Sbjct: 602 VHESRQR 608



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 101/215 (46%), Gaps = 3/215 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG  E A  L   A  +  + D  +++T++   G AG +   L+++  M+ +GV P+ 
Sbjct: 378 AKAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDR 437

Query: 157 ITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +++N  +    RA + WQ    I +EM    ++PN  +Y   + A GRA   E  L +  
Sbjct: 438 VSFNTAMHACNRALK-WQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELME 496

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM+ +G+  +V  Y   +  C   G  D    + E+M   +  +P+  +++  +   +  
Sbjct: 497 EMEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEM-DGKGVEPNVVSYTIAMDAMNRV 555

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           GK   A A+  +M++ G   +     + +   G+A
Sbjct: 556 GKWDRASAVLEQMVQRGLRLDSVSYRTALSTAGRA 590



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 122/284 (42%), Gaps = 21/284 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  ++A  L+    +  +  +  +++T I   G AG  D    +  EM+ + V+P+ +
Sbjct: 273 KAGQYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSV 332

Query: 158 TYNNLLDTMGRAKRPWQVK-TIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +YN ++    + K  W+    +  EM +  G+ P+  +Y + +    +A   E    +  
Sbjct: 333 SYNTVMAAFAK-KNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLT 391

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           E   +G+Q  V  YNT++  C   G   +A ++F  M       PD  +F++ +  C+  
Sbjct: 392 EALGQGLQPDVVSYNTVMHACGRAGEYLQALDLF-GMMEEVGVAPDRVSFNTAMHACNRA 450

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            K   A  +  EM      PN+   T  +   G+A   +   RAL  + E+ +       
Sbjct: 451 LKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWE---RALELMEEMEVR------ 501

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
           G   NV T T   +       V++        V +LLEE D +G
Sbjct: 502 GVPANVHTYTAAMDACCRGGAVDR--------VLVLLEEMDGKG 537


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           +K+  D   ++ L++ +  AGN      V+ EMK  G+KPN+ TY+ ++D++ R  +  +
Sbjct: 192 DKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITR 251

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL- 233
              I+ EM D G  PN  TY SL+R + +A   E  L VY +MK  G +     YN L+ 
Sbjct: 252 AHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIE 311

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
             C D    D A ++   M + + C P++ TF+++    +  G V+ A  M+ +M E   
Sbjct: 312 THCKDENLED-AIKVIGLM-AKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNC 369

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           E N     +L++ +  ++ TD V++    + E  I P+
Sbjct: 370 EANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPN 407



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 110/232 (47%), Gaps = 5/232 (2%)

Query: 102 VEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           V      ++ A N+  +R  P A++ ++   G    FD      + MKA  V   + T+ 
Sbjct: 74  VPQVLAFFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFL 133

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+    RA    +    +  M D    P+   ++ L+    R R        +  +K+K
Sbjct: 134 ILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDK 193

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVS 279
             +  V +Y  L+      G   EA  +F +MK +   +P+ +T+S +I ++C C G+++
Sbjct: 194 -FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVA-GIKPNVYTYSIVIDSLCRC-GQIT 250

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            A  +F EML+AG +PN     SL++ + KA RT+ V++  N++  LG  PD
Sbjct: 251 RAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPD 302



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 1/210 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGN+  A  ++   +    + +   +S +I      G      +++ EM   G +PN I
Sbjct: 210 RAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSI 269

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+    +A R  +V  +Y +M   G  P+  TY  L+  + +    ED + V   M
Sbjct: 270 TYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLM 329

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG   + + +NTL    A +G  + A  +++ MK   NC+ ++ T+++++ +      
Sbjct: 330 AKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKEL-NCEANTVTYNTLMKMFVASKS 388

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
                 +  EM E   EPN+     LI  Y
Sbjct: 389 TDMVLKLKTEMDENKIEPNVNTYKVLITMY 418



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 88/197 (44%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG  E    +Y++ +      D   ++ LI+ +    N +  + V   M   G  PN 
Sbjct: 279 VKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNA 338

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T+N L   + +         +YK+M +     N  TY +L++ +  ++  +  L +  E
Sbjct: 339 STFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTE 398

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E  ++ +V  Y  L+ M   +G+ + A++ F +M   +  +P    +  ++      G
Sbjct: 399 MDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAG 458

Query: 277 KVSEAEAMFNEMLEAGF 293
           ++ + E +  +M++ GF
Sbjct: 459 QLKKHEELVEKMVDRGF 475



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK + + ++V  +  L+      G   EA   F  M+   NC+PD   FS +I+I     
Sbjct: 120 MKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDY-NCKPDKIAFSILISILCRER 178

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----- 331
           + S+A+  F+  L+  FEP++ V T+L++ + +A    +  R    +   GI P+     
Sbjct: 179 RASQAQEFFDS-LKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYS 237

Query: 332 ---DRFCGC 337
              D  C C
Sbjct: 238 IVIDSLCRC 246


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 9/224 (4%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIYK 180
           F  L++ YG AG+      V  +M+ +GV+P M TY  L+D  G+A   +R WQ    ++
Sbjct: 101 FDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQA---WE 157

Query: 181 EMTDNGLSPNWNTYASLLRAYGR---ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +M + GL PN   Y S++   G+       E T +  +     G++ + T YN ++    
Sbjct: 158 DMREQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYG 217

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
                D+   + E M++      D++T S+++   S  G+V +A   F+ +   G +P+L
Sbjct: 218 QQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQPSL 277

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
              T+++   G A R+D+++R L+++  LG+ P       ++N 
Sbjct: 278 HAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINA 321



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 134/301 (44%), Gaps = 18/301 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG V+ A   +D       +   +A++ ++ + GTAG  D  L   ++MK +GVKP+ 
Sbjct: 253 SRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPST 312

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN +++  G+A+    +   +K M  +G++ +  TY +L+  + +     +    Y  
Sbjct: 313 AVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVL 372

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK +G+Q ++    +L+         ++   +   MK  E   PD+  F+ +I      G
Sbjct: 373 MKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMK-KEGRAPDNVVFNLLIDTYGRMG 431

Query: 277 KVSEAEAMF-NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL-PELGITPDDRF 334
           K  EAE +    M E G        TS+I+ + +    D     L+R+  +    PD + 
Sbjct: 432 KPEEAEKVLCGAMKEYGIALETNNFTSVIEAWARNGNLDKAEEWLHRMNTDYATKPDIKT 491

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK-KEATELFNSIS 393
              LL+               C+  ++ K G  V  ++E+  ++ D + +E    F++ +
Sbjct: 492 LTTLLSF--------------CIPAADVKRGRRVIHMIEQHKLQKDKQARETIRQFHAAT 537

Query: 394 K 394
           K
Sbjct: 538 K 538



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 8/221 (3%)

Query: 115 EKWRIDPN------AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           E+ R DP         S ++  +  AG  D  L  ++ + A G +P++  +  +L  +G 
Sbjct: 230 ERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGT 289

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
           A R  ++     +M   G+ P+   Y +++ A+G+AR     +  ++ M+  G+   V  
Sbjct: 290 AGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKT 349

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           YNTL+   A  G   EA + +  MK  E  QP  +T +S++   +   +  +   + + M
Sbjct: 350 YNTLIDTWAKTGKAVEAEKFYVLMK-REGLQPTMYTIASLMDAYTRADQFEKVLRLISRM 408

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGI 328
            + G  P+  V   LI  YG+  + ++  + L   + E GI
Sbjct: 409 KKEGRAPDNVVFNLLIDTYGRMGKPEEAEKVLCGAMKEYGI 449



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 36/227 (15%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++T+I  +G A N    ++ ++ M+  GV  ++ TYN L+DT  +  +  + +  Y  M 
Sbjct: 315 YNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMK 374

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK------------------------- 218
             GL P   T ASL+ AY RA   E  L +   MK                         
Sbjct: 375 REGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKPE 434

Query: 219 -----------EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
                      E G+ L    + +++   A  G  D+A E    M +    +PD  T ++
Sbjct: 435 EAEKVLCGAMKEYGIALETNNFTSVIEAWARNGNLDKAEEWLHRMNTDYATKPDIKTLTT 494

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           +++ C     V     + + + +   + +     ++ Q +   +R D
Sbjct: 495 LLSFCIPAADVKRGRRVIHMIEQHKLQKDKQARETIRQFHAATKRPD 541


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 12/305 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R   V+ A GL+     ++WR  P+A  +++LI  +  AG +   +N+ E+M    + P 
Sbjct: 23  RHNQVDQARGLFFEM--QEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPT 80

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             TYNN+++  G A    +   + K+MT+NG+ P+  T+  +L A          +S + 
Sbjct: 81  RTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFE 140

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSC 274
            MK   +       N ++     +G   EA E+F  M+     C PD  T++S++     
Sbjct: 141 IMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCI 200

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+V   +A+F+ M+  G +PN+    SL+  Y       + +   N + + G+ PD   
Sbjct: 201 YGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVS 260

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNS----KLGYVVKLLLEEQDIEGDFKKEATELFN 390
              LLN   ++ + E  + V    K NS    K+ Y    L++     G   KEA  L +
Sbjct: 261 YTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSY--NALIDAYGSAGML-KEAVGLLH 317

Query: 391 SISKD 395
            + KD
Sbjct: 318 EMEKD 322



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            + G    A  L++  R  + +  P+   +++++  Y   G  + C  +++ M A GVKP
Sbjct: 162 VKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKP 221

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N++ YN+LL          +   I+  +  NGL P+  +Y SLL AYGR+   E    V+
Sbjct: 222 NIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVF 281

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS- 273
            +MK+   + +   YN L+      G   EA  +  +M+  +  QPD  + S+++  C  
Sbjct: 282 NKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEME-KDGIQPDVVSISTLLAACGR 340

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           CR +++  E +       G + N     S I+ Y      +  +     + E  + PD
Sbjct: 341 CR-QITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPD 397



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 39/251 (15%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G VE    ++D    E  + +  A+++L+  Y + G     L ++  +K  G++P++++Y
Sbjct: 202 GQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSY 261

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +LL+  GR+ +P + + ++ +M  N   PN  +Y +L+ AYG A   ++ + +  EM++
Sbjct: 262 TSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEK 321

Query: 220 KGMQLSVTLYNTLLAMCA-----------------------------------DVGYTDE 244
            G+Q  V   +TLLA C                                      G  ++
Sbjct: 322 DGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEK 381

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLT 301
           A E++  M+ S N +PD+ T++ +I+  S  GK +E+   F +M+++        L+ + 
Sbjct: 382 ALELYTSMRES-NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEFLWTIR 440

Query: 302 SLIQCYGKAQR 312
            L +  G  QR
Sbjct: 441 WLEESLGPVQR 451



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 81/159 (50%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+   E A  ++++ +    + +  +++ LI  YG+AG     + +  EM+  G++P+++
Sbjct: 270 RSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVV 329

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           + + LL   GR ++  +++TI +     G+  N   Y S +++Y      E  L +Y  M
Sbjct: 330 SISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSM 389

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           +E  ++     YN L++  + +G   E+   FEDM  S+
Sbjct: 390 RESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSK 428


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 121/244 (49%), Gaps = 8/244 (3%)

Query: 113 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           R+   R+ P+   FSTLI      G  D   +V+++M A G  PN+ITYN L++ + +A 
Sbjct: 171 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 230

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL-- 228
           +  +   + + M D G++P+  TY+ L+ A+ +A   ++ L +   M  +G   +V +  
Sbjct: 231 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPD 290

Query: 229 ---YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
              +N L+A     G  ++A  +FE+M  ++N QPD  TF ++I      G+V  A  + 
Sbjct: 291 KVTFNILIAGACKAGNFEQASALFEEM-VAKNLQPDVMTFGALIDGLCKAGQVEAARDIL 349

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           + M   G  PN+    +L+    K+ R ++  + L  +   G  PD    G L+  + + 
Sbjct: 350 DLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRA 409

Query: 346 PKEE 349
            + +
Sbjct: 410 SRTD 413



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 124/252 (49%), Gaps = 16/252 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG+   A  ++ R    +  + P    ++T+I     + +    + ++EE+   G  P+
Sbjct: 13  RAGDTARALEIF-RGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPD 71

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++TYN L+D++ +A    + + ++ +M+  G  PN  TY+ L+    +    ++   + +
Sbjct: 72  VVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQ 131

Query: 216 EMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMK-SSENCQPDSWTFSSMIT-I 271
           EM  K   +  ++  YN+ L        T EA E+   ++  S    PD+ TFS++I  +
Sbjct: 132 EMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGL 191

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           C C G++ EA ++F++M+  G+ PN+    +L+    KA + +     +  + + G+TPD
Sbjct: 192 CKC-GQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPD 250

Query: 332 --------DRFC 335
                   D FC
Sbjct: 251 VITYSVLVDAFC 262



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 1/219 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN E A  L++    +  + D   F  LI     AG  +   ++ + M  +GV PN++
Sbjct: 303 KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVV 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + ++ R  +     +EM  +G  P+  TY SL+ A  RA   +D L +  E+
Sbjct: 363 TYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSEL 422

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G       YN L+      G T++A  + E+M    + QPDS+TF++  +     G 
Sbjct: 423 KSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGH-QPDSFTFAACFSGLHRSGN 481

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           ++    +   +L  G  P+    +S++    ++ + DDV
Sbjct: 482 LAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDV 520



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 115/250 (46%), Gaps = 8/250 (3%)

Query: 102 VEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           +E+  G+  R       + D   F+ LI     AGNF+    ++EEM A  ++P+++T+ 
Sbjct: 271 LELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFG 330

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+D + +A +    + I   M + G+ PN  TY +L+    ++   E+      EM   
Sbjct: 331 ALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSS 390

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G       Y +L+        TD+A ++  ++KS     PD+ T++ ++      GK  +
Sbjct: 391 GCVPDSITYGSLVYALCRASRTDDALQLVSELKSF-GWDPDTVTYNILVDGLWKSGKTEQ 449

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGC 337
           A  +  EM+  G +P+ F   +   C+    R+ ++   +  L  +   G+ PD   C  
Sbjct: 450 AITVLEEMVGKGHQPDSFTFAA---CFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSS 506

Query: 338 LLNVMTQTPK 347
           +L+ + ++ K
Sbjct: 507 ILDWVCRSGK 516


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 15/260 (5%)

Query: 87  ASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 146
           AS L   S    AG  +  F  Y       +  D   ++TL+  +  AG  D    V+ E
Sbjct: 214 ASLLGALSKKRLAGEAQALFDSYKSV----FPPDVVLYTTLVHAWCRAGCLDKAEQVFAE 269

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           M+  G+ PN+ TY +++D M RA +  + + +  +M + G  PN  T+ +++RA+ +A  
Sbjct: 270 MQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPNTATFNAIMRAHVKAGR 329

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT--DEAFEIFEDMKSSENCQPDSWT 264
            E  L V+ +M++ G    +  YN L+      G +  D A ++   M  ++ C PD  T
Sbjct: 330 SEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKVLAKM-IAKGCIPDCHT 388

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           F+ M+ +    G V  A  ++  M E   +PN+     L++ + K +  D V+R    + 
Sbjct: 389 FNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLMKLFNKEKSMDMVLRIKKDMD 448

Query: 325 ELGITPD--------DRFCG 336
             G+ P+        + FCG
Sbjct: 449 AQGVEPNVNTYGALIESFCG 468



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D + F+ ++KL    GN +    +YE M+ +  KPN++TYN L+    + K    V  I 
Sbjct: 385 DCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLMKLFNKEKSMDMVLRIK 444

Query: 180 KEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           K+M   G+ PN NTY +L+ ++ GR  +     ++   ++EK ++ +  +Y+ +L +   
Sbjct: 445 KDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLREMVEEKSLKPTKPVYDMVLMLLRK 504

Query: 239 VGYTDEAFEIFEDM 252
            G   +  E+ E M
Sbjct: 505 AGQLRKHEELVELM 518



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 86/199 (43%), Gaps = 2/199 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG--NFDGCLNVYEEMKAIGVKP 154
            +AG  E    ++++ R      D   ++ L++ +   G  N D  + V  +M A G  P
Sbjct: 325 VKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKVLAKMIAKGCIP 384

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  T+N +L  +         + +Y+ M +    PN  TY  L++ + + +  +  L + 
Sbjct: 385 DCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLMKLFNKEKSMDMVLRIK 444

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           ++M  +G++ +V  Y  L+      G    A     +M   ++ +P    +  ++ +   
Sbjct: 445 KDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLREMVEEKSLKPTKPVYDMVLMLLRK 504

Query: 275 RGKVSEAEAMFNEMLEAGF 293
            G++ + E +   M + GF
Sbjct: 505 AGQLRKHEELVELMADRGF 523



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  ++D + +       + +  EM +  +  +     +++R Y RA    +   ++R M+
Sbjct: 142 YAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAIIRRYVRAGMSPEASELFRRME 201

Query: 219 EKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           E G  +    +  +LL   +      EA  +F+  KS     PD   +++++      G 
Sbjct: 202 EYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKSV--FPPDVVLYTTLVHAWCRAGC 259

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +AE +F EM +AG  PN++  TS+I    +A +       L ++ E G  P+
Sbjct: 260 LDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPN 313


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 12/305 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R   V+ A GL+     ++WR  P+A  +++LI  +  AG +   +N+ E+M    + P 
Sbjct: 23  RHNQVDQARGLFFEM--QEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPT 80

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             TYNN+++  G A    +   + K+MT+NG+ P+  T+  +L A          +S + 
Sbjct: 81  RTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFE 140

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSC 274
            MK   +       N ++     +G   EA E+F  M+     C PD  T++S++     
Sbjct: 141 IMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCI 200

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+V   +A+F+ M+  G +PN+    SL+  Y       + +   N + + G+ PD   
Sbjct: 201 YGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVS 260

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNS----KLGYVVKLLLEEQDIEGDFKKEATELFN 390
              LLN   ++ + E  + V    K NS    K+ Y    L++     G   KEA  L +
Sbjct: 261 YTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSY--NALIDAYGSAGML-KEAVGLLH 317

Query: 391 SISKD 395
            + KD
Sbjct: 318 EMEKD 322



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 125/267 (46%), Gaps = 36/267 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G VE    ++D    E  + +  A+++L+  Y + G     L ++  +K  G++P++++Y
Sbjct: 202 GQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSY 261

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +LL+  GR+ +P + + ++ +M  N   PN  +Y +L+ AYG A   ++ + +  EM++
Sbjct: 262 TSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEK 321

Query: 220 KGMQLSVTLYNTLLAMCA-----------------------------------DVGYTDE 244
            G+Q  V   +TLLA C                                      G  ++
Sbjct: 322 DGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEK 381

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A E++  M+ S N +PD+ T++ +I+  S  GK +E+   F +M+++       V +SLI
Sbjct: 382 ALELYTSMRES-NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLI 440

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             Y K  +  +     + + + G  PD
Sbjct: 441 YSYIKQGKLSEAESTFSSMKKSGCFPD 467



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            + G    A  L++  R  + +  P+   +++++  Y   G  + C  +++ M A GVKP
Sbjct: 162 VKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKP 221

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N++ YN+LL          +   I+  +  NGL P+  +Y SLL AYGR+   E    V+
Sbjct: 222 NIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVF 281

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS- 273
            +MK+   + +   YN L+      G   EA  +  +M+  +  QPD  + S+++  C  
Sbjct: 282 NKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEME-KDGIQPDVVSISTLLAACGR 340

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           CR +++  E +       G + N     S I+ Y      +  +     + E  + PD
Sbjct: 341 CR-QITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPD 397



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 113/257 (43%), Gaps = 34/257 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+   E A  ++++ +    + +  +++ LI  YG+AG     + +  EM+  G++P+++
Sbjct: 270 RSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVV 329

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           + + LL   GR ++  +++TI +     G+  N   Y S +++Y      E  L +Y  M
Sbjct: 330 SISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSM 389

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--------------------- 256
           +E  ++     YN L++  + +G   E+   FEDM  S+                     
Sbjct: 390 RESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKL 449

Query: 257 -------------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                         C PD  T++++I   +  G    A  +F EM   G  P+  + +SL
Sbjct: 450 SEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSL 509

Query: 304 IQCYGKAQRTDDVVRAL 320
           ++ + K    + V++ +
Sbjct: 510 MEAFNKGGEPERVLQLM 526



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI+ Y   G +    ++++EM+  G+ P+ I  ++L++   +   P +V  + 
Sbjct: 467 DVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLM 526

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M    +  N  +Y  ++ +    R  +    +   +      +SV   N +L      
Sbjct: 527 EFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKC 586

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G T+   ++F  M +S +    S T++ ++      GK  +   +   M ++G  P L++
Sbjct: 587 GKTENMMKLFYKMVTSCSTVGLS-TYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHPTLYM 645

Query: 300 LTSLI 304
             +++
Sbjct: 646 FQNVL 650



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/224 (17%), Positives = 96/224 (42%), Gaps = 1/224 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+ E A  LY   R    + D   ++ LI      G +   L  +E+M    V      Y
Sbjct: 377 GDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVY 436

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           ++L+ +  +  +  + ++ +  M  +G  P+  TY +L++AY      +    +++EM+ 
Sbjct: 437 SSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEV 496

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G+     + ++L+      G  +   ++ E MK  ++   +  ++  +I  C+      
Sbjct: 497 NGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMK-KKSIPLNQKSYFEIIASCTMIRDWK 555

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            A  M   +  +    ++  L  ++   GK  +T+++++   ++
Sbjct: 556 TASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKM 599


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 12/305 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R   V+ A GL+     ++WR  P+A  +++LI  +  AG +   +N+ E+M    + P 
Sbjct: 23  RHNQVDQARGLFFEM--QEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPT 80

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             TYNN+++  G A    +   + K+MT+NG+ P+  T+  +L A          +S + 
Sbjct: 81  RTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFE 140

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSC 274
            MK   +       N ++     +G   EA E+F  M+     C PD  T++S++     
Sbjct: 141 IMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCI 200

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+V   +A+F+ M+  G +PN+    SL+  Y       + +   N + + G+ PD   
Sbjct: 201 YGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVS 260

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNS----KLGYVVKLLLEEQDIEGDFKKEATELFN 390
              LLN   ++ + E  + V    K NS    K+ Y    L++     G   KEA  L +
Sbjct: 261 YTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSY--NALIDAYGSAGML-KEAVGLLH 317

Query: 391 SISKD 395
            + KD
Sbjct: 318 EMEKD 322



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 151/327 (46%), Gaps = 66/327 (20%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G VE    ++D    E  + +  A+++L+  Y + G     L ++  +K  G++P++++Y
Sbjct: 202 GQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSY 261

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +LL+  GR+ +P + + ++ +M  N   PN  +Y +L+ AYG A   ++ + +  EM++
Sbjct: 262 TSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEK 321

Query: 220 KGMQLSVTLYNTLLAMCA-----------------------------------DVGYTDE 244
            G+Q  V   +TLLA C                                      G  ++
Sbjct: 322 DGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEK 381

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMIT----------------------ICSCR-GKVSEA 281
           A E++  M+ S N +PD+ T++ +I+                      + S + GK+SEA
Sbjct: 382 ALELYTSMRES-NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEGKLSEA 440

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
           E+ F+ M ++G  P++   T+LIQ Y   G  +R  D+ +    +   GI PD   C  L
Sbjct: 441 ESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFK---EMEVNGIPPDAIICSSL 497

Query: 339 LNVMTQTPK-EELGKLVECVEKSNSKL 364
           +    +  + E + +L+E ++K +  L
Sbjct: 498 MEAFNKGGEPERVLQLMEFMKKKSIPL 524



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            + G    A  L++  R  + +  P+   +++++  Y   G  + C  +++ M A GVKP
Sbjct: 162 VKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKP 221

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N++ YN+LL          +   I+  +  NGL P+  +Y SLL AYGR+   E    V+
Sbjct: 222 NIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVF 281

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS- 273
            +MK+   + +   YN L+      G   EA  +  +M+  +  QPD  + S+++  C  
Sbjct: 282 NKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEME-KDGIQPDVVSISTLLAACGR 340

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           CR +++  E +       G + N     S I+ Y      +  +     + E  + PD
Sbjct: 341 CR-QITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPD 397



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI+ Y   G +    ++++EM+  G+ P+ I  ++L++   +   P +V  + 
Sbjct: 455 DVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLM 514

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M    +  N  +Y  ++ +    R  +    +   +      +SV   N +L      
Sbjct: 515 EFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKC 574

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G T+   ++F  M +S +    S T++ ++      GK  +   +   M ++G  P L++
Sbjct: 575 GKTENMMKLFYKMVTSCSTVGLS-TYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHPTLYM 633

Query: 300 LTSLI 304
             +++
Sbjct: 634 FQNVL 638


>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
 gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
          Length = 575

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 40/271 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F  +I +   AGN++    V+  M   GV  + +TYN+L+      K   +V  IY
Sbjct: 223 DQKMFHMMIYMQKKAGNYEKARKVFALMAERGVPQSTVTYNSLMSFETNYK---EVSKIY 279

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M  +GL P+  +YA L++AYGRAR  E+ L+V+ EM + G++ S   YN LL   A  
Sbjct: 280 DQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAIS 339

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF- 298
           G  ++A  +F+ M+  + C PD  ++++M++       +  AE  F  + + G +PN+  
Sbjct: 340 GMVEQARVVFKSMR-RDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVT 398

Query: 299 ----------------------------------VLTSLIQCYGKAQRTDDVVRALNRLP 324
                                             +LT+++  YGK +     V     + 
Sbjct: 399 YGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIMDAYGKNKDFGSAVIWYKEME 458

Query: 325 ELGITPDDRFCGCLLNVM-TQTPKEELGKLV 354
             G+ PD +    LL++  TQ  ++E  +LV
Sbjct: 459 HHGVPPDQKAQNILLSLAKTQDEQKEASQLV 489



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 115/242 (47%), Gaps = 9/242 (3%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W  +   F  LI  YG  G+F+G   V   M   G  PN++++  L++  GR  R    +
Sbjct: 112 WDFNEMDFLMLITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAE 171

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
            I++ M  +G  P+  TY  +L+ +    + +  E+        +   ++    +++ ++
Sbjct: 172 AIFRRMQTSGPEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMI 231

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDS-WTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            M    G  ++A ++F  M  +E   P S  T++S+++  +   +VS+   ++++M  +G
Sbjct: 232 YMQKKAGNYEKARKVFALM--AERGVPQSTVTYNSLMSFETNYKEVSK---IYDQMQRSG 286

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
             P++     LI+ YG+A+R ++ +     + + G+ P  +    LL+    +   E  +
Sbjct: 287 LRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQAR 346

Query: 353 LV 354
           +V
Sbjct: 347 VV 348



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R ++   D  +++T++  Y  A + +G  N ++ ++  G+KPN++T
Sbjct: 339 SGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVT 398

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +     ++  IY+EM  N +  N     +++ AYG+ +     +  Y+EM+
Sbjct: 399 YGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIMDAYGKNKDFGSAVIWYKEME 458

Query: 219 EKGMQLSVTLYNTLLAMCAD----------VGYTDE 244
             G+       N LL++             VGY D+
Sbjct: 459 HHGVPPDQKAQNILLSLAKTQDEQKEASQLVGYPDD 494



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 35/161 (21%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    R D  +++ LIK YG A   +  L V+EEM   GV+P+   YN LLD   
Sbjct: 278 IYDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFA 337

Query: 168 RAKRPWQVKTIYKEMT-----------------------------------DNGLSPNWN 192
            +    Q + ++K M                                     +GL PN  
Sbjct: 338 ISGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVV 397

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           TY +L++ + +    E  + +Y EM+   ++ + T+  T++
Sbjct: 398 TYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIM 438



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 6/153 (3%)

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++K+ +D     NW      +   G A      +SV R  + K   L   L    L    
Sbjct: 38  VFKDASDEADQKNWRRLMKQIEDTGSA------VSVLRRERIKKDGLPRDLVLGTLVRFK 91

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            +   D   EI E ++S      +   F  +IT     G  + AE +   M   G+ PN+
Sbjct: 92  QLKKWDLVSEILEWLQSQHWWDFNEMDFLMLITAYGKLGDFNGAEMVLRSMNGNGYVPNV 151

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              T+L++ YG+  R ++      R+   G  P
Sbjct: 152 VSHTALMEAYGRGGRYNNAEAIFRRMQTSGPEP 184


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 3/222 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN+  ++ LI+ YG  G F   L +Y+EM  +G   ++ TYN  +   G+      ++ +
Sbjct: 121 PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERL 180

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM   G+ P+  TY +LL  Y +  Y      + REM E G + ++  YN +L+    
Sbjct: 181 LDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARK 240

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                EA ++FE++KS +   P+  T+S+M+++    G  +EA  +++EM+EAG  P + 
Sbjct: 241 EQSVAEATQLFENLKS-KGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCII 299

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             + LI+ YG      + +     + + GI PD +    L++
Sbjct: 300 AYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMD 341



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 1/232 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G +E A  + D  + +K   +   ++ LIK Y   G    C  +++EMK  G  PN  T
Sbjct: 66  SGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWT 125

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+   GR     +   +Y EM   G + + +TY   +  YG+    ED   +  EM 
Sbjct: 126 YNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMD 185

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            KG+      YNTLL + A   Y  +A EI  +M +    +P+ WT++ M++       V
Sbjct: 186 TKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREM-TEAGYRPNIWTYNIMLSSARKEQSV 244

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +EA  +F  +   G  PN+   ++++  YG+     +  +  + + E G  P
Sbjct: 245 AEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIP 296



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 5/252 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  + A  LYD         D + ++  I +YG  G  +    + +EM   GV P+ +
Sbjct: 135 RKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQV 194

Query: 158 TYNNLLDTMGRAKRPWQVKT--IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           TYN LLD    AK+ + VK   I +EMT+ G  PN  TY  +L +  + +   +   ++ 
Sbjct: 195 TYNTLLDVY--AKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFE 252

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            +K KG+  ++  Y+ +L++    G   EA +++++M  +  C P    +S +I      
Sbjct: 253 NLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEA-GCIPCIIAYSGLIESYGHH 311

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G   EA A F +M ++G  P+  + T+L+  YGKA R  +       + + G  PD    
Sbjct: 312 GMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITY 371

Query: 336 GCLLNVMTQTPK 347
           G L+       +
Sbjct: 372 GILVRAFANAGR 383



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L+     +G  +    + ++MK   V  N++TY NL+       R    + ++
Sbjct: 52  DEILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLF 111

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM D G SPN  TY +L++ YGR    ++ L +Y EM   G    V  YN  +AM    
Sbjct: 112 QEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKR 171

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++   + ++M  ++   PD  T+++++ + + +    +A  +  EM EAG+ PN++ 
Sbjct: 172 GLLEDMERLLDEM-DTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWT 230

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              ++    K Q   +  +    L   G+ P+
Sbjct: 231 YNIMLSSARKEQSVAEATQLFENLKSKGVVPN 262



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 36/208 (17%)

Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196
            D  L + E MK  G KP+ I YN L++ +  + R    + I  +M  + +S N  TY +
Sbjct: 34  LDHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTN 93

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L++ Y                                   A+ G   +  ++F++MK   
Sbjct: 94  LIKEY-----------------------------------ANTGRLQDCRKLFQEMKDKG 118

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
              P+SWT++++I     +G   EA  +++EM   G   ++      I  YGK    +D+
Sbjct: 119 E-SPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDM 177

Query: 317 VRALNRLPELGITPDDRFCGCLLNVMTQ 344
            R L+ +   G+ PD      LL+V  +
Sbjct: 178 ERLLDEMDTKGVPPDQVTYNTLLDVYAK 205


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 125/255 (49%), Gaps = 2/255 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  ++ A  L+++    +      A++T+I  YG+AG FD    + E  KA G  P++I
Sbjct: 67  KANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVI 126

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +L  +G+ +R  +   I++EM  + + PN  TY  L+    R       L +  +M
Sbjct: 127 AYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDM 185

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G+  +V   N ++         +EA  IFE M   + C P++ TFSS+I      G+
Sbjct: 186 ERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGM-DDKVCTPNAVTFSSLIDGLGKCGR 244

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A +++ +ML+ G  P   V TSLI+ + K  R +D  +    +   G +PD      
Sbjct: 245 VDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINT 304

Query: 338 LLNVMTQTPKEELGK 352
            ++ + +  + E G+
Sbjct: 305 YMDCVFKAGETEKGR 319



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 119/275 (43%), Gaps = 40/275 (14%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA  FS+LI   G  G  D   ++YE+M   G  P  I Y +L+ +  +  R      I
Sbjct: 227 PNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKI 286

Query: 179 YKEMTDNGLSPNWN-----------------------------------TYASLLRAYGR 203
           YKEM   G SP+                                     +Y+ L+    +
Sbjct: 287 YKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVK 346

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           A    +T  ++  MKE+G  L    YN ++      G  ++A+++ E+MK   +  P   
Sbjct: 347 AGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH-PPTVV 405

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+ S+I   +   ++ EA  +F E    G + N+ V +SLI  +GK  R D+    +  L
Sbjct: 406 TYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL 465

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
            + G+TP+     CLL+ + +   EE+ + + C +
Sbjct: 466 MQKGLTPNVYTWNCLLDALVKA--EEINEALICFQ 498



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG     + L+   + +   +D +A++ +I  +  +G  +    + EEMK  G  P +
Sbjct: 345 VKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTV 404

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++D + +  R  +   +++E   NG+  N   Y+SL+  +G+    ++   +  E
Sbjct: 405 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEE 464

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           + +KG+  +V  +N LL         +EA   F+ MK  + C P+  T+S +I  +C  R
Sbjct: 465 LMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK-CPPNQITYSILINGLCRVR 523

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + EM + G +PN    T++I    KA    +     +R    G  PD
Sbjct: 524 -KFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPD 578



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 94/183 (51%), Gaps = 1/183 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A++   +++   +S+LI  +G  G  D    + EE+   G+ PN+ T+N LLD
Sbjct: 423 AYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 482

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M D    PN  TY+ L+    R R        ++EM++ G++ 
Sbjct: 483 ALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKP 542

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y T+++  A  G   EA  +F   K++    PDS ++++MI   S   K  +A A+
Sbjct: 543 NTITYTTMISGLAKAGNILEASGLFSRFKANGGI-PDSASYNAMIEGLSSANKAMDAYAL 601

Query: 285 FNE 287
           F E
Sbjct: 602 FEE 604



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           VE A  +++  + +     PN   ++ LI +    G  +  L + ++M+  G+ PN++T 
Sbjct: 141 VEEALRIFEEMKRDAV---PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTV 197

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++D + +A++  +  +I++ M D   +PN  T++SL+   G+    +D  S+Y +M +
Sbjct: 198 NIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLD 257

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G      +Y +L+      G  ++  +I+++M  +  C PD    ++ +      G+  
Sbjct: 258 CGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHT-GCSPDLTLINTYMDCVFKAGETE 316

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-------- 331
           +  A+F E+   GF P+    + LI    KA   ++       + E G   D        
Sbjct: 317 KGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVI 376

Query: 332 DRFC 335
           D FC
Sbjct: 377 DGFC 380



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/285 (20%), Positives = 122/285 (42%), Gaps = 36/285 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A+ LY++  +         +++LI+ +   G  +    +Y+EM   G  P++ 
Sbjct: 241 KCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLT 300

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + +++E+  +G  P+  +Y+ L+    +A    +T  ++  M
Sbjct: 301 LINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAM 360

Query: 218 KEKGMQLSVTLYNTLL-AMC----------------------------------ADVGYT 242
           KE+G  L    YN ++   C                                  A +   
Sbjct: 361 KEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRL 420

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           DEA+ +FE+ KS+   + +   +SS+I      G++ EA  +  E+++ G  PN++    
Sbjct: 421 DEAYMLFEEAKSN-GIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 479

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           L+    KA+  ++ +     + +L   P+      L+N + +  K
Sbjct: 480 LLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRK 524



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +S LI        F+     ++EM+ +G+KPN ITY  ++  + +A    +   +
Sbjct: 507 PNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGL 566

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +     NG  P+  +Y +++     A    D  +++ E + KG  +       LL     
Sbjct: 567 FSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHK 626

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTF 265
               ++A  +   +K +   Q  S +F
Sbjct: 627 AECLEQAAIVGAVLKETAKSQHASRSF 653


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 3/222 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN+  ++ LI+ YG  G F   L +Y+EM  +G   ++ TYN  +   G+      ++ +
Sbjct: 121 PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERL 180

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM   G+ P+  TY +LL  Y +  Y      + REM E G + ++  YN +L+    
Sbjct: 181 LDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARK 240

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                EA ++FE++KS +   P+  T+S+M+++    G  +EA  +++EM+EAG  P + 
Sbjct: 241 EQSVAEATQLFENLKS-KGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCII 299

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             + LI+ YG      + +     + + GI PD +    L++
Sbjct: 300 AYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMD 341



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 1/232 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G +E A  + D  + +K   +   ++ LIK Y  AG    C  +++EMK  G  PN  T
Sbjct: 66  SGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWT 125

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+   GR     +   +Y EM   G + + +TY   +  YG+    ED   +  EM 
Sbjct: 126 YNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMD 185

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            KG+      YNTLL + A   Y  +A EI  +M +    +P+ WT++ M++       V
Sbjct: 186 TKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREM-TEAGYRPNIWTYNIMLSSARKEQSV 244

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +EA  +F  +   G  PN+   ++++  YG+     +  +  + + E G  P
Sbjct: 245 AEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIP 296



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 5/252 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  + A  LYD         D + ++  I +YG  G  +    + +EM   GV P+ +
Sbjct: 135 RKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQV 194

Query: 158 TYNNLLDTMGRAKRPWQVKT--IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           TYN LLD    AK+ + VK   I +EMT+ G  PN  TY  +L +  + +   +   ++ 
Sbjct: 195 TYNTLLDVY--AKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFE 252

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            +K KG+  ++  Y+ +L++    G   EA +++++M  +  C P    +S +I      
Sbjct: 253 NLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEA-GCIPCIIAYSGLIESYGHH 311

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G   EA A F +M ++G  P+  + T+L+  YGKA R  +       + + G  PD    
Sbjct: 312 GMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITY 371

Query: 336 GCLLNVMTQTPK 347
           G L+       +
Sbjct: 372 GILVRAFANAGR 383



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 102/212 (48%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L+     +G  +    + ++MK   V  N++TY NL+     A R    + ++
Sbjct: 52  DEILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLF 111

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM D G SPN  TY +L++ YGR    ++ L +Y EM   G    V  YN  +AM    
Sbjct: 112 QEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKR 171

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++   + ++M  ++   PD  T+++++ + + +    +A  +  EM EAG+ PN++ 
Sbjct: 172 GLLEDMERLLDEM-DTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWT 230

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              ++    K Q   +  +    L   G+ P+
Sbjct: 231 YNIMLSSARKEQSVAEATQLFENLKSKGVVPN 262



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 36/205 (17%)

Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196
            D  L + E MK  G KP+ I YN L++ +  + R    + I  +M  + +S N  TY +
Sbjct: 34  LDHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTN 93

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L++ Y                                   A+ G   +  ++F++MK   
Sbjct: 94  LIKEY-----------------------------------ANAGRLQDCRKLFQEMKDKG 118

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
              P+SWT++++I     +G   EA  +++EM   G   ++      I  YGK    +D+
Sbjct: 119 E-SPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDM 177

Query: 317 VRALNRLPELGITPDDRFCGCLLNV 341
            R L+ +   G+ PD      LL+V
Sbjct: 178 ERLLDEMDTKGVPPDQVTYNTLLDV 202


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 125/250 (50%), Gaps = 4/250 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A+  +   + E  R D    + +I   G AG  D  + +++EM+ +   P+++
Sbjct: 279 KAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVV 338

Query: 158 TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +  +K R  +V + ++ M ++G+SP+  TY+ L+  + +    E  + +  E
Sbjct: 339 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 398

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCR 275
           M EKG       Y +L+         D A E+F+++K  ENC   S   ++ MI      
Sbjct: 399 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK--ENCGSSSARVYAVMIKHLGKA 456

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G++ +A  MF+EM + G  P+++   +L+    +    D+ +  + R+ E G  PD    
Sbjct: 457 GRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSY 516

Query: 336 GCLLNVMTQT 345
             +LN + +T
Sbjct: 517 NIILNGLAKT 526



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 110/229 (48%), Gaps = 2/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EM   + +  RN    + P   S ++++ G A      + ++ ++K    +P    YN++
Sbjct: 108 EMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSM 167

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  +    +  +V  +Y EM+  G   P+  TY++L+ A+ +    +  + +  EMKE G
Sbjct: 168 IIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIG 227

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           MQ +  +Y  L+A+         A  +FE+M+  + C+PD +T++ +I      G++ EA
Sbjct: 228 MQPTTKIYTMLIALFFKFNDAHGALSLFEEMR-HQYCRPDVFTYTELIRGLGKAGRIDEA 286

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              F EM   G  P+   + ++I   GKA R DD ++    +  L   P
Sbjct: 287 YHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIP 335



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 3/233 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G  E    LY+    E     D   +S LI  +   G  D  + +  EMK IG++P    
Sbjct: 175 GQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKI 234

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +        ++++EM      P+  TY  L+R  G+A   ++    + EM+
Sbjct: 235 YTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQ 294

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGK 277
            +G +      N ++      G  D+A ++F++M++   C P   T++++I  +   + +
Sbjct: 295 REGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETL-RCIPSVVTYNTIIKALFESKSR 353

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            SE  + F  M E+G  P+ F  + LI  + K  R +  +  L  + E G  P
Sbjct: 354 ASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 406



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 2/203 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ LI L+    +  G L+++EEM+    +P++ TY  L+  +G+A R  +    + EM 
Sbjct: 235 YTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQ 294

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
             G  P+     +++   G+A   +D + +++EM+      SV  YNT++ A+       
Sbjct: 295 REGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRA 354

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            E    FE MK S    P S+T+S +I       ++ +A  +  EM E GF P      S
Sbjct: 355 SEVPSWFERMKES-GISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCS 413

Query: 303 LIQCYGKAQRTDDVVRALNRLPE 325
           LI   GKA+R D        L E
Sbjct: 414 LIDALGKAKRYDLACELFQELKE 436



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 1/190 (0%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P A+ +LI   G A  +D    +++E+K      +   Y  ++  +G+A R      ++ 
Sbjct: 408 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 467

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM   G +P+   Y +L+    R    ++ LS  R M+E G    +  YN +L   A  G
Sbjct: 468 EMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTG 527

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
               A E+  +MK S   +PD  ++++++   S  G   EA  +  EM   GFE +L   
Sbjct: 528 GPHRAMEMLSNMKQS-TVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITY 586

Query: 301 TSLIQCYGKA 310
           +S+++  GK 
Sbjct: 587 SSILEAIGKV 596



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 83/172 (48%), Gaps = 1/172 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   ++A  L+   +          ++ +IK  G AG  D  +N+++EM  +G  P++ 
Sbjct: 420 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 479

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+  + R     +  +  + M ++G  P+ N+Y  +L    +       + +   M
Sbjct: 480 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 539

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           K+  ++  V  YNT+L   +  G  +EA ++ ++M ++   + D  T+SS++
Sbjct: 540 KQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM-NTLGFEYDLITYSSIL 590



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 36/226 (15%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-LLRAYGRARYGEDTLSVYRE 216
           TY  L+  +   ++  ++  + +EM  N +     T  S ++R  G A+     ++++ +
Sbjct: 92  TYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQ 151

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K +  Q     YN+++ M    G  ++  +++ +M +  +C PD+ T+S++I+     G
Sbjct: 152 IKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLG 211

Query: 277 KVSEAEAMFNEMLEAGFE-----------------------------------PNLFVLT 301
           +   A  + NEM E G +                                   P++F  T
Sbjct: 212 RRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYT 271

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
            LI+  GKA R D+       +   G  PD  F   ++N + +  +
Sbjct: 272 ELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGR 317



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 2/150 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A  ++D         D  A++ L+      G  D  L+    M+  G  P++ 
Sbjct: 455 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 514

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN +L+ + +   P +   +   M  + + P+  +Y ++L A   A   E+   + +EM
Sbjct: 515 SYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM 574

Query: 218 KEKGMQLSVTLYNTLLAMCADVG--YTDEA 245
              G +  +  Y+++L     V   YTD+ 
Sbjct: 575 NTLGFEYDLITYSSILEAIGKVDHEYTDQG 604


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 123/249 (49%), Gaps = 3/249 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G+++ A  +        +  D + +S LI  Y  AG ++    V +EM+A GV+PN 
Sbjct: 337 VKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNS 396

Query: 157 ITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             ++ +L +  R +  WQ    + +EM ++G+SP+ + Y  ++  +G+    +  L+ + 
Sbjct: 397 YVFSRILASY-RDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFD 455

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M+ +G+Q     +NTL+      G+ ++A E+FE M+ S  C P + T++ MI     +
Sbjct: 456 RMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQES-GCSPCTTTYNIMINSFGEQ 514

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            +  + + +  +M   G   N+   T+L+  YG++ R  D +  L  +  +G+ P     
Sbjct: 515 ERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMY 574

Query: 336 GCLLNVMTQ 344
             L+N   Q
Sbjct: 575 NALINAYAQ 583



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 133/278 (47%), Gaps = 11/278 (3%)

Query: 70  TGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 129
           +G  P SY++        S++   SY  R G  + +F +    RN     D + ++ +I 
Sbjct: 390 SGVRPNSYVF--------SRIL-ASYRDR-GKWQKSFQVLREMRNSGVSPDRHFYNVMID 439

Query: 130 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 189
            +G     D  L  ++ M+  GV+P+ +T+N L+D   ++    + + +++ M ++G SP
Sbjct: 440 TFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSP 499

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
              TY  ++ ++G     ED  ++  +M+ +G+  +V  Y TL+ +    G   +A E  
Sbjct: 500 CTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECL 559

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           E MKS    +P S  ++++I   + RG   +A   F  M   G +P++ VL SLI  +G+
Sbjct: 560 EVMKSV-GLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGE 618

Query: 310 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
            +R  +    L  + E  + PD      L+  + +  K
Sbjct: 619 DRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEK 656



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 1/232 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A   +DR R E  + D   ++TLI  +  +G+ +    ++E M+  G  P   TYN 
Sbjct: 447 LDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNI 506

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++++ G  +R   VKT+  +M   GL  N  TY +L+  YG++   +D +     MK  G
Sbjct: 507 MINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVG 566

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ S T+YN L+   A  G +++A   F  M+ ++  +P     +S+I       + +EA
Sbjct: 567 LKPSSTMYNALINAYAQRGLSEQAINAFRVMR-ADGLKPSVLVLNSLINAFGEDRRDAEA 625

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            ++   M E   +P++   T+L++   + ++ D V      +   G TPD +
Sbjct: 626 FSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRK 677



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 122/261 (46%), Gaps = 5/261 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG  E A  +++  +         A++ L+K Y   G+     ++  EM+  G  P+  T
Sbjct: 304 AGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHT 363

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ L+D    A R    + + KEM  +G+ PN   ++ +L +Y      + +  V REM+
Sbjct: 364 YSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR 423

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
             G+      YN ++         D A   F+ M+  E  QPD+ T++++I  C C+ G 
Sbjct: 424 NSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMR-MEGVQPDAVTWNTLID-CHCKSGH 481

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            ++AE +F  M E+G  P       +I  +G+ +R +DV   L ++   G+  +      
Sbjct: 482 HNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTT 541

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           L+++  Q+ +      +EC+E
Sbjct: 542 LVDIYGQSGR--FKDAIECLE 560



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 140/336 (41%), Gaps = 29/336 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+V  A       +             +I   G AG  +    ++EE+K  G+ P   
Sbjct: 268 KSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTR 327

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LL    +       ++I  EM  +G SP+ +TY+ L+ AY  A   E    V +EM
Sbjct: 328 AYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEM 387

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI---CSC 274
           +  G++ +  +++ +LA   D G   ++F++  +M++S    PD   ++ MI     C+C
Sbjct: 388 EASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNS-GVSPDRHFYNVMIDTFGKCNC 446

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
              +  A A F+ M   G +P+     +LI C+ K+   +        + E G +P    
Sbjct: 447 ---LDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSP---- 499

Query: 335 CGCLLNVMTQTPKEE---------LGKLVECVEKSNSKLGYVVKL--LLEEQDIEGDFKK 383
           C    N+M  +  E+         LGK+     +S   L  VV    L++     G FK 
Sbjct: 500 CTTTYNIMINSFGEQERWEDVKTLLGKM-----QSQGLLANVVTYTTLVDIYGQSGRFKD 554

Query: 384 --EATELFNSISKDVKKAYCNCLIDLCVNLNLLENA 417
             E  E+  S+         N LI+      L E A
Sbjct: 555 AIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQA 590



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 11/269 (4%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL--SVY 214
           +TYN L+    R     +   +   M  +G   ++  Y+ ++++  R    + ++   +Y
Sbjct: 185 LTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIY 244

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            E++   ++L   L N ++   A  G  + A   F  M       P + T  ++IT    
Sbjct: 245 AEIESDKIELDGQLLNDIIVGFAKSGDVNRAMS-FLAMVQGNGLSPKTATLVAVITALGN 303

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+  EAEA+F E+ E G  P      +L++ Y K     D    ++ +   G +PD+  
Sbjct: 304 AGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHT 363

Query: 335 CGCLLNVMTQTPKEELGKLV-ECVEKSNSKL-GYVVKLLLEEQDIEGDFKKE---ATELF 389
              L++      + E  ++V + +E S  +   YV   +L      G ++K      E+ 
Sbjct: 364 YSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR 423

Query: 390 NS-ISKDVKKAYCNCLIDLCVNLNLLENA 417
           NS +S D  + + N +ID     N L++A
Sbjct: 424 NSGVSPD--RHFYNVMIDTFGKCNCLDHA 450



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A   +   R +  +      ++LI  +G         +V + MK   +KP+++TY
Sbjct: 585 GLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTY 644

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
             L+  + R ++  +V  +Y+EMT +G +P+    A L  A    RY E TL
Sbjct: 645 TTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSAL---RYMERTL 693


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 116/230 (50%), Gaps = 1/230 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D     Y EM   G+ PN++TYN+++  + +A+   +   + 
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVL 257

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ PN  TY S++  Y  +   ++ +   ++M   G++  V  YN+L+      
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++F+ M +    +P+  T+ +++   + +G + E   + + M+  G  PN +V
Sbjct: 318 GRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            + LI  Y K  + D  +   +++ + G+ PD    G ++ ++ ++ + E
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 3/181 (1%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   +STLI  Y  AG  D    +   M ++G+KP+ +TYN L++   +  R     
Sbjct: 510 VKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDAL 569

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +++EM  +G+SP+  TY  +L+   + R       +Y  + E G QL ++ YN +L   
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                TDEA  +F+++  ++  Q ++ TF+ MI      G+  EA+ +F  +   G  P+
Sbjct: 630 CKNNLTDEALRMFQNLCLTD-LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 297 L 297
           +
Sbjct: 689 V 689



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 110/237 (46%), Gaps = 1/237 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + +   + TL++ Y T G       + + M   G+ P
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N   ++ L+    +  +  Q   ++ +M   GL+P+  TY +++    ++   ED +  +
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++ +     +YN+L+         D+A E+  +M     C  D+  F+S+I     
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL-DTIFFNSIIDSHCK 491

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+V E+E +F+ M+  G +PN+   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 4/244 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           AG +++ F        + +R+D  AF+ L+K L       D    V   M  +G  PN+ 
Sbjct: 104 AGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVF 163

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +YN LL  +    R  +   + + M D+G    P+  +Y +++  + +    +     Y 
Sbjct: 164 SYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYH 223

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM ++G+  +V  YN+++A        D+A E+   M  +    P+  T++S++      
Sbjct: 224 EMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKN-GVMPNCRTYNSIVHGYCSS 282

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G+  EA     +M   G EP++    SL+    K  R  +  +  + + + G+ P+    
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 336 GCLL 339
           G LL
Sbjct: 343 GTLL 346



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 4/221 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG ++ A  L     +   + D   ++TLI  Y      +  L ++ EM++ GV P++IT
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +L  + + +R    K +Y  +T++G     +TY  +L    +    ++ L +++ + 
Sbjct: 587 YNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              +QL    +N ++     VG  DEA ++F  + S+    PD  T+S M      +G +
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAAL-SANGLVPDVRTYSLMAENLIEQGLL 705

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            E + +F  M E G   N  +L S+++   K  +  D+ RA
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVR---KLLQRGDITRA 743



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 103/216 (47%), Gaps = 1/216 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A  ++ + R +    D   + T+I +   +G  +  +  +E+M    + P  I
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN+L+ ++    +  + K +  EM D G+  +   + S++ ++ +     ++  ++  M
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++ ++  Y+TL+      G  DEA ++   M S    +PD  T++++I       +
Sbjct: 506 VRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSV-GMKPDCVTYNTLINGYCKISR 564

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
           + +A  +F EM  +G  P++     ++Q   + +RT
Sbjct: 565 MEDALVLFREMESSGVSPDIITYNIILQGLFQTRRT 600



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 7/217 (3%)

Query: 144 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  LL+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 201 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 258
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            PD  +++++I      G + +A   ++EML+ G  PN+    S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAME 255

Query: 319 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 353
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 103/226 (45%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G VE A   +++  +E+       +++LI        +D    +  EM   G+  + I
Sbjct: 421 KSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTI 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N+++D+  +  R  + + ++  M   G+ PN  TY++L+  Y  A   ++   +   M
Sbjct: 481 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASM 540

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              GM+     YNTL+     +   ++A  +F +M+SS    PD  T++ ++       +
Sbjct: 541 VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS-GVSPDIITYNIILQGLFQTRR 599

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            + A+ ++  + E+G +  L     ++    K   TD+ +R    L
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKP 154
           R G  E +  L +R + E  R+ PN   ++T+I        +++G L ++ EM+  GV+P
Sbjct: 195 RNGQYETSLELLERMKRE--RVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQP 252

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++TYN LL          + + ++K M + G+ P   TY+ ++  +G+    E    + 
Sbjct: 253 DLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLL 312

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           +EM+ +G    ++ YN L+   A +G   EA ++F+ M+++  C P++ T+S ++ +   
Sbjct: 313 KEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAA-GCVPNASTYSILLNLYGK 371

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+  +   +F +M E+  EP+      LI+ +G+     +VV   + L +  I P+
Sbjct: 372 HGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPN 428



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 173/407 (42%), Gaps = 43/407 (10%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA  +S L+ LYG  G +D    ++ +MK    +P+  TYN L+   G      +V T+
Sbjct: 357 PNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTL 416

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + ++ D  + PN  TY  L+ A G+    ED   +   M  KG+  S   Y+ L+     
Sbjct: 417 FHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQ 476

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               DEA   F  M      +    T++S+I   +  G   E EA+ + M E G   N  
Sbjct: 477 AALYDEALVAFNTMNEV-GSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAK 535

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV-----MTQTPKEELGKL 353
             + +I+ Y ++ + ++ ++A   + ++    D++    +L V     +    KE+  ++
Sbjct: 536 SFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEI 595

Query: 354 --------VEC------VEKSNSKLGYVVKLLLE-------------EQDIEGDFKKEAT 386
                   V C      V   N +     +LL E              Q I+GD+  ++ 
Sbjct: 596 KASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSN 655

Query: 387 -----ELFNSISKD---VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSP 438
                 +F+ ++ +       + N L++    L     A ++L       ++ ++  +S 
Sbjct: 656 WQMVEYVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRQSK 715

Query: 439 TQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHG 485
             WS+ +  +  G A TA+ +W+N +++ L  GE+ P L  +  G G
Sbjct: 716 LVWSVDVHRMWEGGAYTAVSLWVNKMNEMLMDGEDLPQLAAVVVGRG 762



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 112/219 (51%), Gaps = 5/219 (2%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           K R+  N FS + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 107 KNRLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEK 166

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
              I+ EM   G+  +  +Y +L+ AYGR    E +L +   MK + +  ++  YNT++ 
Sbjct: 167 CSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVIN 226

Query: 235 MCA--DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            CA  D+ + +    +F +M+  E  QPD  T++++++ C+ RG   EAE +F  M+E G
Sbjct: 227 ACARGDLDW-EGLLGLFAEMR-HEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGG 284

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             P +   + +++ +GK  + + V   L  +   G  PD
Sbjct: 285 IVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPD 323



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 153/328 (46%), Gaps = 7/328 (2%)

Query: 100 GNVEMAFGLYDRARNEKW-RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G+ + +  L+   + + W + + + ++ +I L G  G  + C  +++EM + GV  ++ +
Sbjct: 126 GDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFS 185

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREM 217
           Y  L++  GR  +      + + M    +SPN  TY +++ A  R     E  L ++ EM
Sbjct: 186 YTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEM 245

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+Q  +  YNTLL+ CA  G  DEA  +F+ M       P+  T+S ++      GK
Sbjct: 246 RHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEG-GIVPEITTYSYIVETFGKLGK 304

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +   +  EM   G+ P++     LI+ + K     + +    ++   G  P+      
Sbjct: 305 LEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSI 364

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI---S 393
           LLN+  +  + +++ +L   +++S+++       +L     EG + KE   LF+ +   +
Sbjct: 365 LLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDEN 424

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLL 421
            D        L+  C    L E+A K+L
Sbjct: 425 IDPNMETYEGLVFACGKGGLHEDAKKIL 452



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 133/283 (46%), Gaps = 10/283 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E    L     +E +  D ++++ LI+ +   G+    ++V+++M+A G  PN  
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ LL+  G+  R   V+ ++ +M ++   P+  TY  L+R +G   Y ++ ++++ ++
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++ +  ++  Y  L+  C   G  ++A +I   M + +   P S  +S +I        
Sbjct: 421 VDENIDPNMETYEGLVFACGKGGLHEDAKKILFHM-NGKGIVPSSKAYSGLIEAYGQAAL 479

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCG 336
             EA   FN M E G +  +    SLI  + +     +    L+R+ E GI+ + + F G
Sbjct: 480 YDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSG 539

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
            +         EE  K    +EK        ++  L+EQ +EG
Sbjct: 540 IIEGYRQSGQYEEAIKAFVEMEK--------MRCELDEQTLEG 574


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 126/252 (50%), Gaps = 1/252 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  +V  A+ +++   N+  R +  +++T+I     AG  D  ++++++M+     P + 
Sbjct: 261 RNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVR 320

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++  +    R  +   ++ EM +    PN +TY  ++ A  + R  +++  +  EM
Sbjct: 321 TYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEM 380

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+  SV  YN L+    + G  + A EI   M+S+ NC+P+  T++ +I   S R  
Sbjct: 381 MEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESN-NCRPNERTYNELICGFSKRKH 439

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A  + ++MLE+   P+L    SLI    KA   D   + L+ L E G+ PD      
Sbjct: 440 VHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSV 499

Query: 338 LLNVMTQTPKEE 349
            ++ + ++ + E
Sbjct: 500 FIDTLCKSKRME 511



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 162/362 (44%), Gaps = 49/362 (13%)

Query: 76  SYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 129
           +Y   N    +  +  E SY T       AG ++    L+ + R +        ++ +I 
Sbjct: 268 AYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIH 327

Query: 130 -LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
            L+G   N +G ++++ EM+    +PN+ TY  ++D M + ++  + + I  EM + GL 
Sbjct: 328 ALFGNDRNLEG-MDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLV 386

Query: 189 PNWNTYASLLRAY---GRA--------------------------------RYGEDTLSV 213
           P+  TY +L+R Y   GR                                 ++    +++
Sbjct: 387 PSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTL 446

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TIC 272
             +M E  +  S+  YN+L+ +    G+ D A+++ + +K +    PD WT+S  I T+C
Sbjct: 447 LSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKEN-GLVPDQWTYSVFIDTLC 505

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             + ++ EA  +FN + E G + N  + T+LI  + KA + D+ +  L R+      P+ 
Sbjct: 506 KSK-RMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNS 564

Query: 333 RFCGCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFN 390
                L+  + +  K + G  +VE + K   K       +L+EE   EGDF   A  +FN
Sbjct: 565 STYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDF-DHANRVFN 623

Query: 391 SI 392
            +
Sbjct: 624 QM 625



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 5/235 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG+ + A+ L D  +      D   +S  I     +   +   +++  +K  G+K N +
Sbjct: 471 KAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEV 530

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYR 215
            Y  L+D   +A +  +  ++ + M      PN +TY SL+  YG  + G  ++ LS+  
Sbjct: 531 MYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLI--YGVCKEGKVQEGLSMVE 588

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M + G++ +V  Y  L+      G  D A  +F  M S  + +PD +T+++ I      
Sbjct: 589 NMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGH-KPDVYTYTAFIHTYCTS 647

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           G V EAE M   M+EAG  P+    T LI  Y +     D    L R+ + G  P
Sbjct: 648 GNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDP 702



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 1/215 (0%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           K+++   +++ L+ +       D    VY EM    + PN+ T N +++   +     + 
Sbjct: 174 KFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEA 233

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
                ++   GLSP+  TY SL+  Y R         V+  M  KG + +   Y T++  
Sbjct: 234 NLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHG 293

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
             + G  DE   +F+ M+  ++C P   T++ +I       +  E   +FNEM E   EP
Sbjct: 294 LCEAGRIDEGISLFKKMR-EDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEP 352

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           N+   T ++    K ++ D+  R LN + E G+ P
Sbjct: 353 NVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVP 387



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 109/235 (46%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++  +V  A  L  +    K       +++LI +   AG+FD    + + +K  G+ P+ 
Sbjct: 435 SKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQ 494

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY+  +DT+ ++KR  +   ++  + + G+  N   Y +L+  + +A   ++ +S+   
Sbjct: 495 WTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLER 554

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +    + + YN+L+      G   E   + E+M S    +P   T++ +I      G
Sbjct: 555 MHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENM-SKMGVKPTVATYTILIEEMLREG 613

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               A  +FN+M+  G +P+++  T+ I  Y  +    +    + R+ E G+ PD
Sbjct: 614 DFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPD 668



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 1/172 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A  L +R  +E    + + +++LI      G     L++ E M  +GVKP + 
Sbjct: 541 KAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVA 600

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++ M R         ++ +M   G  P+  TY + +  Y  +   ++   +   M
Sbjct: 601 TYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARM 660

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            E G+      Y  L++    +G   +AF + + M  +  C P    ++++I
Sbjct: 661 IEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDA-GCDPSHPIWNNLI 711



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 92/207 (44%), Gaps = 1/207 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++  +E A  L++  + +  + +   ++ LI  +  AG  D  +++ E M +    PN  
Sbjct: 506 KSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSS 565

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+  + +  +  +  ++ + M+  G+ P   TY  L+    R    +    V+ +M
Sbjct: 566 TYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQM 625

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G +  V  Y   +      G   EA  +   M  +    PDS T++ +I+     G 
Sbjct: 626 VSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEA-GVMPDSLTYTLLISAYERLGL 684

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLI 304
             +A  +   ML+AG +P+  +  +LI
Sbjct: 685 AYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           R+  +   +LSV  YN LL M A     DE   ++ +M  ++   P+ +T ++M+   S 
Sbjct: 168 RDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEM-LNDMIVPNIYTLNTMVNAYSK 226

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            G + EA    +++ +AG  P+ F  TSLI  Y +    +   +  N +P  G
Sbjct: 227 MGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKG 279


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKP 154
           R G  E +  L +R + E  R+ PN   ++T+I        +++G L ++ EM+  GV+P
Sbjct: 195 RNGQYETSLELLERMKRE--RVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQP 252

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++TYN LL          + + ++K M + G+ P   TY+ ++  +G+    E    + 
Sbjct: 253 DLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLL 312

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           +EM+ +G    ++ YN L+   A +G   EA ++F+ M+++  C P++ T+S ++ +   
Sbjct: 313 KEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAA-GCVPNASTYSILLNLYGK 371

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+  +   +F +M E+  EP+      LI+ +G+     +VV   + L +  I P+
Sbjct: 372 HGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPN 428



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 173/407 (42%), Gaps = 43/407 (10%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA  +S L+ LYG  G +D    ++ +MK    +P+  TYN L+   G      +V T+
Sbjct: 357 PNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTL 416

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + ++ D  + PN  TY  L+ A G+    ED   +   M  KG+  S   Y+ L+     
Sbjct: 417 FHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQ 476

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               DEA   F  M      +    T++S+I   +  G   E EA+ + M E G   N  
Sbjct: 477 AALYDEALVAFNTMNEV-GSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAK 535

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV-----MTQTPKEELGKL 353
             + +I+ Y ++ + ++ ++A   + ++    D++    +L V     +    KE+  ++
Sbjct: 536 SFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEI 595

Query: 354 --------VEC------VEKSNSKLGYVVKLLLE-------------EQDIEGDFKKEAT 386
                   V C      V   N +     +LL E              Q I+GD+  ++ 
Sbjct: 596 KASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSN 655

Query: 387 -----ELFNSISKD---VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSP 438
                 +F+ ++ +       + N L++    L     A ++L       ++ ++  +S 
Sbjct: 656 WQMVEYVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRQSK 715

Query: 439 TQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHG 485
             WS+ +  +  G A TA+ +W+N +++ L  GE+ P L  +  G G
Sbjct: 716 LVWSVDVHRMWEGGAYTAVSLWVNKMNEMLMDGEDLPQLAAVVVGRG 762



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 112/219 (51%), Gaps = 5/219 (2%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           K R+  N FS + K +   G++   L +++ M + I  KPN   Y  ++  +GR     +
Sbjct: 107 KNRLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEK 166

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
              I+ EM   G+  +  +Y +L+ AYGR    E +L +   MK + +  ++  YNT++ 
Sbjct: 167 CSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVIN 226

Query: 235 MCA--DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            CA  D+ + +    +F +M+  E  QPD  T++++++ C+ RG   EAE +F  M+E G
Sbjct: 227 ACARGDLDW-EGLLGLFAEMR-HEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGG 284

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             P +   + +++ +GK  + + V   L  +   G  PD
Sbjct: 285 IVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPD 323



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 153/328 (46%), Gaps = 7/328 (2%)

Query: 100 GNVEMAFGLYDRARNEKW-RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G+ + +  L+   + + W + + + ++ +I L G  G  + C  +++EM + GV  ++ +
Sbjct: 126 GDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFS 185

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREM 217
           Y  L++  GR  +      + + M    +SPN  TY +++ A  R     E  L ++ EM
Sbjct: 186 YTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEM 245

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+Q  +  YNTLL+ CA  G  DEA  +F+ M       P+  T+S ++      GK
Sbjct: 246 RHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEG-GIVPEITTYSYIVETFGKLGK 304

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +   +  EM   G+ P++     LI+ + K     + +    ++   G  P+      
Sbjct: 305 LEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSI 364

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI---S 393
           LLN+  +  + +++ +L   +++S+++       +L     EG + KE   LF+ +   +
Sbjct: 365 LLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDEN 424

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLL 421
            D        L+  C    L E+A K+L
Sbjct: 425 IDPNMETYEGLVFACGKGGLHEDAKKIL 452



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 133/283 (46%), Gaps = 10/283 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E    L     +E +  D ++++ LI+ +   G+    ++V+++M+A G  PN  
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ LL+  G+  R   V+ ++ +M ++   P+  TY  L+R +G   Y ++ ++++ ++
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++ +  ++  Y  L+  C   G  ++A +I   M + +   P S  +S +I        
Sbjct: 421 VDENIDPNMETYEGLVFACGKGGLHEDAKKILFHM-NGKGIVPSSKAYSGLIEAYGQAAL 479

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCG 336
             EA   FN M E G +  +    SLI  + +     +    L+R+ E GI+ + + F G
Sbjct: 480 YDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSG 539

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
            +         EE  K    +EK        ++  L+EQ +EG
Sbjct: 540 IIEGYRQSGQYEEAIKAFVEMEK--------MRCELDEQTLEG 574


>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 562

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 42/290 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+ +I ++  AG+++     + +M  +G++   +TYN+L+      K   +V  IY
Sbjct: 243 DQKMFNMMIYMHKKAGSYEKARKTFAQMAELGIQQTTVTYNSLMSFETNYK---EVSNIY 299

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M    L P+  +YA L+ AYG+AR  E+ L+V+ EM + G++ +   YN LL   +  
Sbjct: 300 DQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSIS 359

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF- 298
           G  ++A  +F+ M+      PD  ++++M++       +  AE  F  +++ GFEPN+  
Sbjct: 360 GMVEQAQTVFKSMRRDRYF-PDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVT 418

Query: 299 ----------------------------------VLTSLIQCYGKAQRTDDVVRALNRLP 324
                                             +LT+++  YGK+   D  V     + 
Sbjct: 419 YGTLIKGYAKINDLEMVMKKYEEMLMRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEME 478

Query: 325 ELGITPDDRFCGCLLNVM-TQTPKEELGKLVECVEKSNS--KLGYVVKLL 371
             GI PD +    LL++  T   +EE  +LV    +++S  K+  +VKL+
Sbjct: 479 SNGIPPDQKAKNVLLSLAKTDEEREEANELVVHFSENSSLPKVNGIVKLV 528



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 103/230 (44%), Gaps = 7/230 (3%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  LI  YG  G+F+G   V   M   G  PN+++   L++  G+  R    +
Sbjct: 132 WDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAE 191

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
            I++ M   G  P+  TY  +L+ +    + R  E+        +   ++    ++N ++
Sbjct: 192 AIFRRMQKWGPEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMI 251

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            M    G  ++A + F  M +    Q  + T++S+++  +   +VS    ++++M  A  
Sbjct: 252 YMHKKAGSYEKARKTFAQM-AELGIQQTTVTYNSLMSFETNYKEVSN---IYDQMQRADL 307

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            P++     L+  YGKA+R ++ +     + + GI P  +    LL+  +
Sbjct: 308 RPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFS 357



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 72/150 (48%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R +++  D  +++T++  Y  A + +G    ++ +   G +PN++T
Sbjct: 359 SGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVT 418

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +      V   Y+EM   G+  N     +++ AYG++   +  +  ++EM+
Sbjct: 419 YGTLIKGYAKINDLEMVMKKYEEMLMRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEME 478

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
             G+       N LL++       +EA E+
Sbjct: 479 SNGIPPDQKAKNVLLSLAKTDEEREEANEL 508


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTI 178
           D   +S L+  Y  AG ++    + +EM+A GVKP+   ++ +L    R +  WQ    +
Sbjct: 326 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF-RDRGEWQKAFAV 384

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM  +G+ P+ + Y  ++  +G+       +  +  M+E+G++  V  +NTL+     
Sbjct: 385 LREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCK 444

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D A E+F++M+ S NC   + T++ MI +     +    EAM  EM E G  PN+ 
Sbjct: 445 GGRHDRAIELFDEMRES-NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNII 503

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             T+L+  YG++ R  + V  +  +   G+ P       L+N   Q
Sbjct: 504 TYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQ 549



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 110/229 (48%), Gaps = 1/229 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A   +DR R E    D   ++TLI  +   G  D  + +++EM+         TYN +++
Sbjct: 416 AMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMIN 475

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G  +R   V+ +  EM + GL PN  TY +L+  YGR+   ++ +     MK  G++ 
Sbjct: 476 LLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKP 535

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y+ L+   A  G  D A  + + M+ ++  +  +   +S+I       +++EA ++
Sbjct: 536 SPTMYHALVNAYAQRGLADHALNVVKAMR-ADGLEASTVVLNSLINAFGEDRRIAEAFSV 594

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
              M E G  P++   T+L++   + ++ + V      +   G  PD +
Sbjct: 595 LQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRK 643



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L+D  R     +    ++ +I L G    ++G   +  EMK  G+ PN+I
Sbjct: 444 KGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNII 503

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  GR+ R  +     + M  +GL P+   Y +L+ AY +    +  L+V + M
Sbjct: 504 TYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM 563

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G++ S  + N+L+    +     EAF + + MK +   +PD  T+++++       +
Sbjct: 564 RADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKEN-GLRPDVITYTTLMKALIRVEQ 622

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +   ++ EM+ +G  P+
Sbjct: 623 FEKVPVIYEEMITSGCAPD 641



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 11/261 (4%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G  P SY++        S++     D   G  + AF +         R D + ++ +I  
Sbjct: 357 GVKPSSYVF--------SRILAGFRDR--GEWQKAFAVLREMHASGVRPDRHFYNVMIDT 406

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +G        ++ ++ M+  G++P+++T+N L+D   +  R  +   ++ EM ++     
Sbjct: 407 FGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLG 466

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY  ++   G  +  E   ++  EMKE+G+  ++  Y TL+ +    G   EA +  E
Sbjct: 467 TTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIE 526

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            MK ++  +P    + +++   + RG    A  +   M   G E +  VL SLI  +G+ 
Sbjct: 527 AMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGED 585

Query: 311 QRTDDVVRALNRLPELGITPD 331
           +R  +    L  + E G+ PD
Sbjct: 586 RRIAEAFSVLQFMKENGLRPD 606



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 126/271 (46%), Gaps = 10/271 (3%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R++P+A  FS LI  +  A   D  L +    +AIG+ P       L+ ++G A+R  + 
Sbjct: 216 RLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEA 275

Query: 176 KTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
           + ++ E    G + P    Y +LL+ Y +    ++   V  EM + G+      Y+ L+ 
Sbjct: 276 EALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVD 335

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                G  + A  + ++M+ ++  +P S+ FS ++     RG+  +A A+  EM  +G  
Sbjct: 336 AYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KL 353
           P+      +I  +GK       + A +R+ E GI PD      L++   +  + +   +L
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454

Query: 354 VECVEKSNSKLG-----YVVKLLLEEQDIEG 379
            + + +SN  LG      ++ LL EEQ  EG
Sbjct: 455 FDEMRESNCPLGTTTYNIMINLLGEEQRWEG 485



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 121/290 (41%), Gaps = 48/290 (16%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMT---DNGLSPNWNTYASLLRAYGRARYGEDT 210
           P++ +Y++LL  +   + P +   + + +    ++ L P+   ++ L+ A+ RAR  +  
Sbjct: 181 PDLASYSHLLALLLNTRDPPEAALLDRLLGDLRESRLEPDAPLFSDLISAFARARLPDAA 240

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           L                    LLA    +G T                 P S   +++I+
Sbjct: 241 LE-------------------LLASAQAIGLT-----------------PRSNAVTALIS 264

Query: 271 ICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 +V+EAEA+F E   AG  +P      +L++ Y K     +  + L+ + + G+ 
Sbjct: 265 SLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVA 324

Query: 330 PDDRFCGCLLNVMTQTPKEELGK-LVECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATE 387
           PD+     L++  T+  + E  + L++ +E    K   YV   +L      G+++K    
Sbjct: 325 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAV 384

Query: 388 LFNSISKDVK--KAYCNCLIDLCVNLNLLENAC----KLLELGLTLEVYT 431
           L    +  V+  + + N +ID     N L +A     ++ E G+  +V T
Sbjct: 385 LREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVT 434



 Score = 45.4 bits (106), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            ++LI  +G         +V + MK  G++P++ITY  L+  + R ++  +V  IY+EM 
Sbjct: 575 LNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMI 634

Query: 184 DNGLSPNWNTYASL 197
            +G +P+    A L
Sbjct: 635 TSGCAPDRKARAML 648


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  L    + +   ++   F+T+I  Y   G  D  L +   M+ +GV+ ++ 
Sbjct: 120 KIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIY 179

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L   + R  R  + KT+   M + G+ PN+ TY +L+  + +     +   ++REM
Sbjct: 180 TYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREM 239

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG   SV  YN ++   A  G   EA E F      +   PD +T++S++      GK
Sbjct: 240 AEKGATPSVVTYNVMIHGYAKKGSIREA-ERFRKEMEKKGFVPDVYTYASLVHGHCVNGK 298

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           V  A  +F EM + G EPN+   T+LI    K  R++   +  + + + G+ PDD
Sbjct: 299 VDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDD 353



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 1/197 (0%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           G   G   V +E    GV+PN  TY  L++   +  +    + +  +M   G+  N   +
Sbjct: 87  GTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIF 146

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
            +++  Y R    +D L +   M++ G++L +  YNTL      V   DEA  +   M  
Sbjct: 147 NTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIE 206

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
                P+  T++++I+I    G + EA  +F EM E G  P++     +I  Y K     
Sbjct: 207 M-GVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIR 265

Query: 315 DVVRALNRLPELGITPD 331
           +  R    + + G  PD
Sbjct: 266 EAERFRKEMEKKGFVPD 282



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 29/238 (12%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           + P A S ++     +G  D    + ++M   GV  N + YN+LLD   R K   +V+ I
Sbjct: 12  VSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEI 71

Query: 179 YK------------------------EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
            +                        E   NG+ PN  TY  L+  + +    E    + 
Sbjct: 72  LEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLL 131

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS- 273
            +M+ +G+ L+  ++NT++      G  D+A +I   M+     + D +T++++   C  
Sbjct: 132 ADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKM-GVELDIYTYNTL--ACGL 188

Query: 274 CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           CR  ++ EA+ + + M+E G  PN    T+LI  + K     +  R    + E G TP
Sbjct: 189 CRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATP 246


>gi|168049701|ref|XP_001777300.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671276|gb|EDQ57830.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 291

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 132/278 (47%), Gaps = 8/278 (2%)

Query: 115 EKW-RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           + W R+DP+ ++T+I   G++G  D    ++ +M    VK + + YN+LL    ++ +  
Sbjct: 4   QGWCRLDPHLYTTIIDTLGSSGCLDLAKKIFSDMDD-SVKKDTVLYNSLLHAYCKSGQVE 62

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTL 232
               ++  M      P+ +TY +++  Y +   G    LS+++EM  +G+Q  V  Y+ L
Sbjct: 63  TANELFNSMKQKDCRPDLSTYNTIMNMYVKTDVGLTKVLSLFKEMCLQGIQPDVVSYDIL 122

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM---FNEML 289
           LA CA   +  EA  IF+ MK     +P   T++S+IT+ +  G  S    +   F EM+
Sbjct: 123 LAACAPKQHVKEAQRIFDTMKKRRGIKPTVVTYTSLITVYANAGIYSSPNQLCPLFGEMV 182

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
               +PN+   TSLI    K    ++       + E G+ P+      L+NV T+  +++
Sbjct: 183 AEKCQPNVKTFTSLINSCRKGGHVEEAQTIFEAMKEYGVKPNVVTYNALINVYTERGEQD 242

Query: 350 LGKLV--ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 385
             + V  + V+      G    +L+      G FK+ +
Sbjct: 243 GAQRVFLQMVQSGLQPTGVSFTVLMSSFKATGAFKEAS 280


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 12/224 (5%)

Query: 113 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           R+   R+ P+   FSTLI      G  D   +V+++M A G  PN+ITYN L++ + +A 
Sbjct: 350 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 409

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
           +  +   + + M D G++P+  TY+ L+ A+ +A   ++ L +   M  +G   +V  +N
Sbjct: 410 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFN 469

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           +++        + EAF++F+DM       PD  T+ ++I      G+  +AEA+ + M  
Sbjct: 470 SIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMP- 528

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRAL---NRLPELGITPD 331
              +P+ +       C     +  DV RAL   NR+ EL + PD
Sbjct: 529 ---DPDTYAFNC---CINGLSKLGDVSRALQVYNRMLELELVPD 566



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 9/221 (4%)

Query: 113  RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
            R+   R+ P+   FSTLI      G  D   NV+++M A G  PN++TYN L++ + +  
Sbjct: 844  RDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTD 903

Query: 171  RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
            +  +   + + M D G++P+  TY+ L+ A+ +A + ++ L +   M  +G   +V  +N
Sbjct: 904  KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFN 963

Query: 231  TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
            +++        + EAF++F+DM       PD  T+ ++I      G   +AE + + M  
Sbjct: 964  SIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMP- 1022

Query: 291  AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               +P+ +       C     +  DV RAL+R+ EL + PD
Sbjct: 1023 ---DPDTYAFNC---CINGLSKLGDVSRALHRMLELELVPD 1057



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 121/252 (48%), Gaps = 16/252 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG    A  ++ R    +  + P    ++T+I     +      + ++EE+   G  P+
Sbjct: 192 RAGETARALEIF-RGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPD 250

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++TYN L+D++ +A    + + ++ +M+     PN  TY+ L+    +    ++   + +
Sbjct: 251 VVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQ 310

Query: 216 EMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMK-SSENCQPDSWTFSSMIT-I 271
           EM  K   +  ++  YN+ L        T EA E+   ++  S    PD+ TFS++I  +
Sbjct: 311 EMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGL 370

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           C C G++ EA ++F++M+  G+ PN+    +L+    KA + +     +  + + G+TPD
Sbjct: 371 CKC-GQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPD 429

Query: 332 --------DRFC 335
                   D FC
Sbjct: 430 VITYSVLVDAFC 441



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 4/221 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN E A  L++    +  + D   F  LI     AG  +   ++ + M  +GV PN++
Sbjct: 579 KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVV 638

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + ++ R  +     +EM  +G  P+  TY SL+ A  RA   +D L +  E+
Sbjct: 639 TYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSEL 698

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G       YN L+      G T++A  + E+M    +  PD  T++++I      G 
Sbjct: 699 KSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGH-HPDVVTYNTLIDSLCKAGD 757

Query: 278 VSEAEAMFNEM---LEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           + EA  +  +M   +     PN+   + LI    K  R D+
Sbjct: 758 LEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDE 798



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 33/284 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  +E A  + +   ++    D   +S L+  +  A   D  L +   M + G  PN++
Sbjct: 407 KADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV 466

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAY---GRARYGE----- 208
           T+N+++D + ++ R  +   ++ +M   +GL P+  TY +L+      GRA   E     
Sbjct: 467 TFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDA 526

Query: 209 ----DT-------------------LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
               DT                   L VY  M E  +      +N L+A     G  ++A
Sbjct: 527 MPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQA 586

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             +FE+M  ++N QPD  TF ++I      G+V  A  + + M   G  PN+    +L+ 
Sbjct: 587 SALFEEM-VAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVH 645

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
              K+ R ++  + L  +   G  PD    G L+  + +  + +
Sbjct: 646 GLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTD 689



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 1/222 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G+V  A  +Y+R    +   D   F+ LI     AGNF+    ++EEM A  ++P++
Sbjct: 543 SKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 602

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+  L+D + +A +    + I   M + G+ PN  TY +L+    ++   E+      E
Sbjct: 603 MTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEE 662

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G       Y +L+        TD+A ++  ++KS     PD+ T++ ++      G
Sbjct: 663 MVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSF-GWDPDTVTYNILVDGLWKSG 721

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           +  +A  +  EM+  G  P++    +LI    KA   ++  R
Sbjct: 722 QTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARR 763



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 3/214 (1%)

Query: 120 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DP+  AF+  I      G+    L VY  M  + + P+ +T+N L+    +A    Q   
Sbjct: 529 DPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASA 588

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +++EM    L P+  T+ +L+    +A   E    +   M   G+  +V  YN L+    
Sbjct: 589 LFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLC 648

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  +EA +  E+M SS  C PDS T+ S++       +  +A  + +E+   G++P+ 
Sbjct: 649 KSGRIEEACQFLEEMVSS-GCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDT 707

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                L+    K+ +T+  +  L  +   G  PD
Sbjct: 708 VTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPD 741



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 9/242 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRI-DPNA--FSTLIKLYGTAGNFDGCLNVYEEM--KAIGV 152
           +AG++E A  L+    +   R   PN   +S LI      G  D    + +EM  K+  V
Sbjct: 754 KAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDV 813

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPNWNTYASLLRAYGRARYGEDT 210
            PN+ITYN+ LD + +     +   + + + D  L  SP+  T+++L+    +    ++ 
Sbjct: 814 LPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA 873

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
            +V+ +M   G   +V  YN L+         + A  + E M   +   PD  T+S ++ 
Sbjct: 874 CNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESM-VDKGVTPDVITYSVLVD 932

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-ELGIT 329
                  V EA  + + M   G  PN+    S+I    K+ ++ +  +  + +  + G+ 
Sbjct: 933 AFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLA 992

Query: 330 PD 331
           PD
Sbjct: 993 PD 994



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 6/208 (2%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKR 171
           R  K R+ P+  + +  L    GN +     Y+   A+ G K  + ++N  L+ + ++  
Sbjct: 69  RGCKGRLHPSVAAAI--LAQLDGNAELGTQFYDWAAALPGFKHTIFSFNKYLNLLVKSGS 126

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
           P +   +++        PN  TY++LLRA Y      E TL  +R ++      SV  YN
Sbjct: 127 PAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIRSS--SRSVADYN 184

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
            +L      G T  A EIF    + +   P   T++++I       ++     +F E++E
Sbjct: 185 IVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVE 244

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            G  P++    +LI    KA   ++  R
Sbjct: 245 RGHHPDVVTYNTLIDSLCKAGDLEEARR 272


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 2/222 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +AF   IK +  AG     + V+E MK  G    + ++N LL  +       + + ++ +
Sbjct: 265 DAFKVAIKSFAAAGEIKNAVGVFELMKKNGFDDGVESFNCLLVALANEGLGREARQVFDK 324

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M     SP+  +Y +L+ A+  AR   +   V+ EM EKGM+  V ++NT++        
Sbjct: 325 MHGQ-YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQR 383

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             EA ++FE MK+ +   P+ WT++ +I     RGK+  A   F EM EA  +P++   T
Sbjct: 384 RPEALKMFELMKA-KGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYT 442

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            L+  YG A+R D V   L  + + G  PD R    L+ ++T
Sbjct: 443 CLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLT 484



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 108/225 (48%), Gaps = 3/225 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D+   + +  D  +++ L+  +  A N      V+ EM   G+KP+++ +N +++ + 
Sbjct: 321 VFDKMHGQ-YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLL 379

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R +R  +   +++ M   G  PN  TY  L+R + +    +  +  + EM+E   Q  V 
Sbjct: 380 RGQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVA 439

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  LL    +    D    + E+M + + C PD+ T++++I + + R    +A  ++ +
Sbjct: 440 TYTCLLVGYGNAKRMDRVTAVLEEM-TQKGCPPDARTYNALIKLLTNRKMPDDAARIYKK 498

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPD 331
           M++ G EP +     +++ Y    R   +  A+   +   GI PD
Sbjct: 499 MIKKGLEPTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPD 543



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 6/198 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ LI+ +   G  D  +  +EEM+    +P++ TY  LL   G AKR  +V  +
Sbjct: 401 PNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAV 460

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--MC 236
            +EMT  G  P+  TY +L++     +  +D   +Y++M +KG++ ++  YN ++     
Sbjct: 461 LEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFL 520

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            D  Y      ++E+M     C PD  +++  I      G+  EA     EM+  G    
Sbjct: 521 GDRNYA-MGCAVWEEMHRRGIC-PDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMTAP 578

Query: 297 LFVLTSLIQCYGKAQRTD 314
                     + KA + D
Sbjct: 579 QIDYNKFAADFSKAGKPD 596



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++MA   ++  +  + + D   ++ L+  YG A   D    V EEM   G  P+  
Sbjct: 415 KRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDAR 474

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYR 215
           TYN L+  +   K P     IYK+M   GL P  +TY  ++++Y  G   Y     +V+ 
Sbjct: 475 TYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGDRNYAMGC-AVWE 533

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           EM  +G+   V  Y   +      G  +EA++  E+M
Sbjct: 534 EMHRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEM 570



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYRE---------------------------- 216
            G +    TY  +L   G+ R  E  +++ +E                            
Sbjct: 224 GGFTHTTITYCKMLHILGKTRQFEMMVAIIQEMGKVGALSMDAFKVAIKSFAAAGEIKNA 283

Query: 217 ------MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MI 269
                 MK+ G    V  +N LL   A+ G   EA ++F+ M    +  PD  ++++ M+
Sbjct: 284 VGVFELMKKNGFDDGVESFNCLLVALANEGLGREARQVFDKMHGQYS--PDLRSYTALML 341

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
             C+ R  V EA  ++NEMLE G +P++ V  ++I+   + QR  + ++    +   G  
Sbjct: 342 AWCNARNLV-EAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGPP 400

Query: 330 PD 331
           P+
Sbjct: 401 PN 402


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            +++A GL+   +      D   ++ L+   G +   +  L V EEM   G +   +TYN 
Sbjct: 771  IDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNT 830

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            ++  + +++R  Q   +Y  +   G SP   TY  LL    +A   ED  +++ EM E G
Sbjct: 831  IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 890

Query: 222  MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSE 280
             + + T+YN LL      G T++   +F+DM   +   PD  +++ +I T+C   G++++
Sbjct: 891  CKANCTIYNILLNGHRIAGNTEKVCHLFQDM-VDQGINPDIKSYTIIIDTLCKA-GQLND 948

Query: 281  AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLL 339
                F ++LE G EP+L     LI   GK++R ++ V   N + + GI P+   +   +L
Sbjct: 949  GLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLIL 1008

Query: 340  NVMTQTPKEELGKLVE 355
            ++       E GK+ E
Sbjct: 1009 HLGKAGKAAEAGKMYE 1024



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 115/235 (48%), Gaps = 1/235 (0%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             ++  +E A  LY    ++ +   P  +  L+     AG  +   N++ EM   G K N 
Sbjct: 836  VKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANC 895

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
              YN LL+    A    +V  ++++M D G++P+  +Y  ++    +A    D L+ +R+
Sbjct: 896  TIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQ 955

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + E G++  +  YN L+         +EA  +F +M+  +   P+ +T++S+I      G
Sbjct: 956  LLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ-KKGIVPNLYTYNSLILHLGKAG 1014

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K +EA  M+ E+L  G++PN+F   +LI+ Y  +  TD    A  R+   G  P+
Sbjct: 1015 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1069



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 123/263 (46%), Gaps = 2/263 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+ +    +++  + + +  +  A++ +I      G     L +++EMK  G+ P   +Y
Sbjct: 314 GDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSY 373

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N+L+    +A R      ++K M  +G  PN  T+   +  YG++      +  Y  MK 
Sbjct: 374 NSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 433

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG+   V   N +L   A  G    A  +F ++K+     PD+ T++ MI  CS   K  
Sbjct: 434 KGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM-GVSPDTITYTMMIKCCSKASKFD 492

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA  +F +M+E    P++  + SLI    KA R D+  R   +L E+ + P D     LL
Sbjct: 493 EAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLL 552

Query: 340 NVMTQTPK-EELGKLVECVEKSN 361
             + +  K +E+  L+E +  SN
Sbjct: 553 AGLGREGKVKEVMHLLEEMYHSN 575



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 3/213 (1%)

Query: 121 PNAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN ++ +  I  YG +G     +  YE MK+ G+ P+++  N +L  + ++ R    K +
Sbjct: 403 PNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRV 462

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E+   G+SP+  TY  +++   +A   ++ + ++ +M E      V   N+L+     
Sbjct: 463 FHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYK 522

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEA+ IF  +K   N +P   T+++++      GKV E   +  EM  + + PNL 
Sbjct: 523 AGRGDEAWRIFYQLKEM-NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 581

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +++ C  K    +D +  L  +   G  PD
Sbjct: 582 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD 614



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PN +S    I++ G A  FD    +  +M+  G KP++IT+  L+  +  A R 
Sbjct: 222 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 281

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
              K ++ +M  +   P+  TY +LL  +G     +  + ++  MK  G   +V  Y  +
Sbjct: 282 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 341

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +     VG   EA E+F++MK  +   P+ ++++S+I+      +  +A  +F  M   G
Sbjct: 342 IDALCQVGRVFEALEMFDEMK-QKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHG 400

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +PN +     I  YGK+  +   ++    +   GI PD
Sbjct: 401 PKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 439



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 1/170 (0%)

Query: 99   AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            AGN E    L+    ++    D  +++ +I     AG  +  L  + ++  +G++P++IT
Sbjct: 908  AGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLIT 967

Query: 159  YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            YN L+D +G++KR  +  +++ EM   G+ PN  TY SL+   G+A    +   +Y E+ 
Sbjct: 968  YNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELL 1027

Query: 219  EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
             KG + +V  YN L+   +  G TD A+  +  M     C P+S T+  +
Sbjct: 1028 TKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVG-GCLPNSSTYMQL 1076



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 118/251 (47%), Gaps = 6/251 (2%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D  + +  + +   F+ +    G  G           MK  G+  N  TYN L+  + 
Sbjct: 112 VFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLV 171

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           ++    +   +Y+ M  +G+ P+  TY+ L+ A+G+ R  E  L + REM+  G++ +V 
Sbjct: 172 KSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVY 231

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y   + +       DEA+ I   M+ +E C+PD  T + +I +    G++S+A+ +F +
Sbjct: 232 SYTICIRVLGQAKRFDEAYRILAKME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 290

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           M ++  +P+     +L+  +G    +  V+   N +   G   +      +++ + Q   
Sbjct: 291 MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQ--- 347

Query: 348 EELGKLVECVE 358
             +G++ E +E
Sbjct: 348 --VGRVFEALE 356



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 9/231 (3%)

Query: 109 YDRARNEKWRI--------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           +DR   E +R+            +S L+  +G   + +  L +  EM+A GVKPN+ +Y 
Sbjct: 175 FDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYT 234

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
             +  +G+AKR  +   I  +M + G  P+  T+  L++    A    D   V+ +MK+ 
Sbjct: 235 ICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKS 294

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
             +     Y TLL    D G +    EI+  MK ++    +   ++++I      G+V E
Sbjct: 295 DQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMK-ADGYNDNVVAYTAVIDALCQVGRVFE 353

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A  MF+EM + G  P  +   SLI  + KA R  D +     +   G  P+
Sbjct: 354 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPN 404



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 6/216 (2%)

Query: 119 IDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P+  +    L+G A  G       V+ E+KA+GV P+ ITY  ++    +A +  +  
Sbjct: 436 IVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAV 495

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I+ +M +N   P+     SL+    +A  G++   ++ ++KE  ++ +   YNTLLA  
Sbjct: 496 KIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGL 555

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEP 295
              G   E   + E+M  S N  P+  T+++++  C C+ G V++A  M   M   G  P
Sbjct: 556 GREGKVKEVMHLLEEMYHS-NYPPNLITYNTILD-CLCKNGAVNDALDMLYSMTTKGCIP 613

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +L    ++I    K +R ++      ++ ++ + PD
Sbjct: 614 DLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 648



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 113/268 (42%), Gaps = 34/268 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   + A+ +  +  NE  + D    + LI++   AG      +V+ +MK    KP+ +
Sbjct: 242 QAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRV 301

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD  G       V  I+  M  +G + N   Y +++ A  +     + L ++ EM
Sbjct: 302 TYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEM 361

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM--------------------KSSEN 257
           K+KG+      YN+L++         +A E+F+ M                    KS E+
Sbjct: 362 KQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGES 421

Query: 258 CQ--------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            +              PD    ++++   +  G++  A+ +F+E+   G  P+    T +
Sbjct: 422 IKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMM 481

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I+C  KA + D+ V+    + E    PD
Sbjct: 482 IKCCSKASKFDEAVKIFYDMIENNCVPD 509



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A ++LI     AG  D    ++ ++K + ++P   TYN LL  +GR  +  +V  + 
Sbjct: 509 DVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 568

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM  +   PN  TY ++L    +     D L +   M  KG    ++ YNT++      
Sbjct: 569 EEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 628

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE-MLEAGFEPNLF 298
              +EAF IF  MK      PD  T  +++      G + EA  +  +  L+ G + +  
Sbjct: 629 ERYNEAFSIFCQMKKV--LIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRS 686

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF-CGCLLNVMTQTPKEELGKLVE 355
              SL++   K    +  +     +   GIT DD F C  + ++  Q    E  +LV+
Sbjct: 687 SCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVK 744


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTI 178
           D   +S L+  Y  AG ++    + +EM+A GVKP+   ++ +L    R +  WQ    +
Sbjct: 326 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF-RDRGEWQKAFAV 384

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM  +G+ P+ + Y  ++  +G+       +  +  M+E+G++  V  +NTL+     
Sbjct: 385 LREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCK 444

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D A E+F++M+ S NC   + T++ MI +     +    EAM  EM E G  PN+ 
Sbjct: 445 GGRHDRAIELFDEMRES-NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNII 503

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             T+L+  YG++ R  + V  +  +   G+ P       L+N   Q
Sbjct: 504 TYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQ 549



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 110/229 (48%), Gaps = 1/229 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A   +DR R E    D   ++TLI  +   G  D  + +++EM+         TYN +++
Sbjct: 416 AMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMIN 475

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G  +R   V+ +  EM + GL PN  TY +L+  YGR+   ++ +     MK  G++ 
Sbjct: 476 LLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKP 535

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y+ L+   A  G  D A  + + M+ ++  +  +   +S+I       +++EA ++
Sbjct: 536 SPTMYHALVNAYAQRGLADHALNVVKAMR-ADGLEASTVVLNSLINAFGEDRRIAEAFSV 594

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
              M E G  P++   T+L++   + ++ + V      +   G  PD +
Sbjct: 595 LQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRK 643



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L+D  R     +    ++ +I L G    ++G   +  EMK  G+ PN+I
Sbjct: 444 KGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNII 503

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  GR+ R  +     + M  +GL P+   Y +L+ AY +    +  L+V + M
Sbjct: 504 TYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM 563

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G++ S  + N+L+    +     EAF + + MK +   +PD  T+++++       +
Sbjct: 564 RADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKEN-GLRPDVITYTTLMKALIRVEQ 622

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +   ++ EM+ +G  P+
Sbjct: 623 FEKVPVIYEEMITSGCAPD 641



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 11/261 (4%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G  P SY++        S++     D   G  + AF +         R D + ++ +I  
Sbjct: 357 GVKPSSYVF--------SRILAGFRDR--GEWQKAFAVLREMHASGVRPDRHFYNVMIDT 406

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +G        ++ ++ M+  G++P+++T+N L+D   +  R  +   ++ EM ++     
Sbjct: 407 FGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLG 466

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY  ++   G  +  E   ++  EMKE+G+  ++  Y TL+ +    G   EA +  E
Sbjct: 467 TTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIE 526

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            MK ++  +P    + +++   + RG    A  +   M   G E +  VL SLI  +G+ 
Sbjct: 527 AMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGED 585

Query: 311 QRTDDVVRALNRLPELGITPD 331
           +R  +    L  + E G+ PD
Sbjct: 586 RRIAEAFSVLQFMKENGLRPD 606



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 126/271 (46%), Gaps = 10/271 (3%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R++P+A  FS LI  +  A   D  L +    +AIG+ P       L+ ++G A+R  + 
Sbjct: 216 RLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEA 275

Query: 176 KTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
           + ++ E    G + P    Y +LL+ Y +    ++   V  EM + G+      Y+ L+ 
Sbjct: 276 EALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVD 335

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                G  + A  + ++M+ ++  +P S+ FS ++     RG+  +A A+  EM  +G  
Sbjct: 336 AYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KL 353
           P+      +I  +GK       + A +R+ E GI PD      L++   +  + +   +L
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454

Query: 354 VECVEKSNSKLG-----YVVKLLLEEQDIEG 379
            + + +SN  LG      ++ LL EEQ  EG
Sbjct: 455 FDEMRESNCPLGTTTYNIMINLLGEEQRWEG 485



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 116/262 (44%), Gaps = 13/262 (4%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDT---LSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + ++   P+  +Y+ LL +    R   D      +  +++E  ++    L++ L++  A 
Sbjct: 174 LREHSFLPDLASYSHLLASLLNTRDPPDAALLDRLLGDLRESRLEPDAPLFSDLISAFAR 233

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 297
               D A E+    ++     P S   +++I+      +V+EAEA+F E   AG  +P  
Sbjct: 234 ARLPDAALELLASAQAI-GLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRT 292

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 356
               +L++ Y K     +  + L+ + + G+ PD+     L++  T+  + E  + L++ 
Sbjct: 293 RAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 352

Query: 357 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 413
           +E    K   YV   +L      G+++K    L    +  V+  + + N +ID     N 
Sbjct: 353 MEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNC 412

Query: 414 LENAC----KLLELGLTLEVYT 431
           L +A     ++ E G+  +V T
Sbjct: 413 LGHAMDAFDRMREEGIEPDVVT 434



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            ++LI  +G         +V + MK  G++P++ITY  L+  + R ++  +V  IY+EM 
Sbjct: 575 LNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMI 634

Query: 184 DNGLSPNWNTYASL 197
            +G +P+    A L
Sbjct: 635 TSGCAPDRKARAML 648


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 116/230 (50%), Gaps = 13/230 (5%)

Query: 114 NEKWR-----------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           +E WR           + P  +S ++K+ G A   +  L+V+ ++K     P    YN L
Sbjct: 141 DEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTL 200

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  +       ++  +Y E+   G  SP+  TY++L+ A+G+    +    ++ EMKE G
Sbjct: 201 ILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENG 260

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +  +  +Y T+LAM   +   + A  + E+MK  + C P  +T++ +I      G+V +A
Sbjct: 261 LHPTEKIYTTILAMYFKLNKVEAALRLVEEMK-GKGCAPTVFTYTELIKGLGKVGRVDDA 319

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++F  ML+ G +P++ ++ +LI   G+A R +D ++   ++  L   P+
Sbjct: 320 YSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPN 369



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 2/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI  +G    +D    +++EMK  G+ P    Y  +L    +  +      + 
Sbjct: 229 DTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLV 288

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM   G +P   TY  L++  G+    +D  S++  M + G +  V L N L+ +    
Sbjct: 289 EEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRA 348

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G  ++A ++F  M S + C P+  T++++I  I   +   SEA   F +M   G  P+ F
Sbjct: 349 GRLEDALKLFGKMDSLQ-CAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSF 407

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               LI  + K  R +  +  L  + E G  P
Sbjct: 408 TYAILIDGFCKTNRVEKALLLLEEMDEKGFPP 439



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 127/284 (44%), Gaps = 20/284 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
           +A  V  A  ++ + +  K       ++TLI +    G+ +    +Y E+ + G   P+ 
Sbjct: 171 KAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDT 230

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITY+ L+   G+ +R      ++ EM +NGL P    Y ++L  Y +    E  L +  E
Sbjct: 231 ITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEE 290

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK KG   +V  Y  L+     VG  D+A+ +F +M   + C+PD    +++I I    G
Sbjct: 291 MKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNM-LKDGCKPDVVLINNLINILGRAG 349

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR-TDDVVRALNRLPELGITPDDRFC 335
           ++ +A  +F +M      PN+    ++I+   +++    +      ++   GI P     
Sbjct: 350 RLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTY 409

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
             L++   +T +         VEK+         LLLEE D +G
Sbjct: 410 AILIDGFCKTNR---------VEKA--------LLLLEEMDEKG 436



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 2/224 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           + AF L+D  +          ++T++ +Y      +  L + EEMK  G  P + TY  L
Sbjct: 247 DFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTEL 306

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  +G+  R     +++  M  +G  P+     +L+   GRA   ED L ++ +M     
Sbjct: 307 IKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQC 366

Query: 223 QLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             +V  YNT++ A+        EA   FE MK++    P S+T++ +I       +V +A
Sbjct: 367 APNVVTYNTVIKAIFESKAPASEAALWFEKMKAN-GIAPSSFTYAILIDGFCKTNRVEKA 425

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
             +  EM E GF P      SLI   G+A+R +        L E
Sbjct: 426 LLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKE 469



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 111/235 (47%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           RAG +E A  L+ +  + +   +   ++T+IK ++ +          +E+MKA G+ P+ 
Sbjct: 347 RAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSS 406

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  L+D   +  R  +   + +EM + G  P    Y SL+ + GRA+  E    +++E
Sbjct: 407 FTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQE 466

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +KE   + S  +Y  ++    + G   +A ++F + +    C PD +T++++++     G
Sbjct: 467 LKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKL-GCSPDVYTYNALMSGMIRAG 525

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + EA ++   M E G  P++     ++    K       +    ++ E  I PD
Sbjct: 526 MIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPD 580



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 3/194 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P++F  + LI  +      +  L + EEM   G  P    Y +L+D++GRAKR     
Sbjct: 402 IAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAAN 461

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +++E+ +N    +   YA +++ +G      D + ++ E ++ G    V  YN L++  
Sbjct: 462 ELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGM 521

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  DEA  +  +M+ +  C PD  + + ++   +  G    A  MF +M E+   P+
Sbjct: 522 IRAGMIDEAHSLMRNMREN-GCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPD 580

Query: 297 LFVLTSLIQCYGKA 310
                +++ C  +A
Sbjct: 581 AVSYNTILSCLSRA 594



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 1/213 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   VE A  L +    + +   P A+ +LI   G A  ++    +++E+K    + +  
Sbjct: 418 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSAR 477

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++   G   R      ++ E    G SP+  TY +L+    RA   ++  S+ R M
Sbjct: 478 VYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNM 537

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G    +  +N +L   A  G    A E+F  MK SE   PD+ +++++++  S  G 
Sbjct: 538 RENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESE-IMPDAVSYNTILSCLSRAGM 596

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
              A  +  EM   GFE +    +S+++  GK 
Sbjct: 597 FEMAAKLMREMKLKGFEYDSITYSSILEAVGKV 629



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA   E A  L+   +    R     ++ +IK +G  G     ++++ E + +G  P++ 
Sbjct: 453 RAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVY 512

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  M RA    +  ++ + M +NG +P+  ++  +L    +    +  + ++ +M
Sbjct: 513 TYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKM 572

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE  +      YNT+L+  +  G  + A ++  +MK  +  + DS T+SS   I    GK
Sbjct: 573 KESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMK-LKGFEYDSITYSS---ILEAVGK 628

Query: 278 VSE 280
           V E
Sbjct: 629 VDE 631


>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 713

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 184/417 (44%), Gaps = 63/417 (15%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           R   ++ D   ++TL+ ++G  G++     + E+MKA G  P   TYN+L+   GR  + 
Sbjct: 305 RKYNYKSDLVFYNTLLFMFGKGGHYADAWKILEDMKAAGFMPTSETYNSLILAFGRGSQW 364

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLY 229
            + +   + M  NG+ P   +++ LL AY   G+   GE  +    +MKE+ +   +  +
Sbjct: 365 QEAENTLERMKANGVKPVAQSFSFLLEAYSLSGQIPKGEKLIV---KMKEENLIYGIAGH 421

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQ-----PDSWTFSSMITICSCRGKVSEAEAM 284
           N+LL      G      +I   +++ E CQ     P+  +F  MI   +    V E    
Sbjct: 422 NSLLRFYMRAG------DIGSIIQTYETCQTRGPKPNQSSFVPMIEALTKENTVDERFWG 475

Query: 285 FNEMLE-AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
             + LE A F+ +  +  +L+   G+  ++ D  R L  L  LG +PD   C        
Sbjct: 476 IAQDLENAPFDVHFAIHGALLSALGRCGQSPDADRLLGILKRLGCSPD--IC-------- 525

Query: 344 QTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-----DVKK 398
                    L E  E + SKL             E  +K+ AT LFNS+ +     + ++
Sbjct: 526 --------NLFEEGEAAQSKLSG-----------EEAWKRLAT-LFNSLEQEGVNMEAER 565

Query: 399 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALH 458
            + N LID     +    A K+ EL ++L V+     +    WSL ++    GAA   L 
Sbjct: 566 NFHNALIDALWRFDYKLRALKVTELSVSLGVFGSNVCQWKDCWSLDVRFAGTGAAQILLL 625

Query: 459 IWINDLSKALESGEEFPPLLGI------NTGHGKHKYSDKGLASVFESHLKELNAPF 509
            W++ + +A++SGE+ P  + I          G++  +  G++    +HL  L APF
Sbjct: 626 TWLSGIRQAIKSGEKMPSKVKILLAWEWQLRTGENWGARDGVS----AHLNALKAPF 678



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 114/237 (48%), Gaps = 11/237 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK--LYGTAGNFDGCLNVYEEMKAIGVKP 154
           T+ G+++   G+  + R        +A++ +++     T G+ +G +  +  +  +G++ 
Sbjct: 69  TKCGSLQRGIGILQKMREAGIHPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDMGLQQ 128

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + +T+N +++ + R  R   V   +  M    + P+  T + L+ A+GRAR       V 
Sbjct: 129 DSVTFNIIMNALNRVGRIRDVDRYWALMRMGRIVPDLTTCSILINAFGRARDWHKVDLVL 188

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS---------SENCQPDSWTF 265
            EM+  G++  + +YN+L+++    G   E   + + +++         + +   D  T+
Sbjct: 189 AEMETYGIKADLMIYNSLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSSLAFDLVTY 248

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
           ++++ +    G++ +    F EM ++G +P++    SL+  YGKA   D  V  L R
Sbjct: 249 NTLLDVYGKAGRLDDVIYWFGEMKKSGVQPDVLTFDSLVNAYGKASHYDGEVLELFR 305



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 13/226 (5%)

Query: 141 LNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           + V++ M+A+  +KP+ + Y  +++ +  A+R    + +++E   +G+SP+ + Y  L+ 
Sbjct: 7   IQVFQWMQALPDLKPDELVYRTIINVLINARRMNVAEAVFEEFVKSGMSPSHDDYVILMS 66

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC-----ADVGYTDEAFEIFEDMKS 254
            Y +    +  + + ++M+E G+   V+ YN +L  C      D+    EA  I  DM  
Sbjct: 67  GYTKCGSLQRGIGILQKMREAGIHPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDM-- 124

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
               Q DS TF+ ++   +  G++ + +  +  M      P+L   + LI  +G+A+   
Sbjct: 125 --GLQQDSVTFNIIMNALNRVGRIRDVDRYWALMRMGRIVPDLTTCSILINAFGRARDWH 182

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
            V   L  +   GI  D      L++V     K  L   VE V KS
Sbjct: 183 KVDLVLAEMETYGIKADLMIYNSLISVY---GKAGLFYEVELVVKS 225


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ A+ LY R  +E   +D  +++ L      A   D  L V+ EM+   V P+++TY
Sbjct: 121 GKVDAAYELYKRLSDE-CSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTY 179

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTD----NGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           N LL    RA R  Q  T+ +EM +    + + P+  +Y +++  + +AR       V R
Sbjct: 180 NGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLR 239

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M + G   +V  +NTLL      G  DEA  +FE M    NC+P + T++ +IT  +  
Sbjct: 240 RMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM-VERNCEPTAVTYTVLITGHARA 298

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ +A   F +ML  G EPN++  T+LI     A + +D +  L R+   G  P+
Sbjct: 299 LRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPN 354



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 4/203 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TL+      G  D    ++E M     +P  +TY  L+    RA R  +    
Sbjct: 248 PNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDY 307

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M   G+ PN  TY +L+     A   ED L + + M   G + +V  Y  ++     
Sbjct: 308 FVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCK 367

Query: 239 VGYTDEAFEIFEDMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            G  + A ++F D   S    C+PDS+ +S+++     + K  EA   F  M+E+     
Sbjct: 368 GGQIERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAK 427

Query: 297 LFVLTSLIQCYGKAQRTDDVVRA 319
             +  ++       Q T+ V R 
Sbjct: 428 PHIYKAMADGLELVQETEKVERV 450



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 8/214 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRID--PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           RAG +E A  L +     K   D  P+ +S  T+I  +  A        V   M   G  
Sbjct: 188 RAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCS 247

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN++T+N LLD +    +  +   +++ M +    P   TY  L+  + RA   +     
Sbjct: 248 PNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDY 307

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + +M  +G++ +V  Y  L+    D    ++A EI + M SS   +P+  T++ +I    
Sbjct: 308 FVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRM-SSTGREPNVVTYTRVIGALC 366

Query: 274 CRGKVSEAEAMFNEML---EAGFEPNLFVLTSLI 304
             G++  A  +FN+ +    A  +P+ +  ++++
Sbjct: 367 KGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIV 400



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 4/171 (2%)

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TYN  L+ + +     + + I+ +M      PN  TY  +LR        +  L + +
Sbjct: 37  VFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQ 96

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M+ K +  +  + N L++     G  D A+E+++ +  S+ C  D  ++ +M+T   C+
Sbjct: 97  DMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRL--SDECSLDRISY-NMLTYGLCK 153

Query: 276 G-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
             ++  A A+F EM E    P+L     L+  Y +A R +  +  L  + E
Sbjct: 154 ADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIE 204



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +++  Q +V  YN  L      G+  +A +IF+DM   E C P+ +T+  ++       K
Sbjct: 29  RQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKE-CLPNIYTYGIVLRGLCDDAK 87

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
              A  +  +M      P  F++  L+ C  K  + D       RL +
Sbjct: 88  TDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSD 135


>gi|116789832|gb|ABK25404.1| unknown [Picea sitchensis]
          Length = 278

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 95/185 (51%), Gaps = 1/185 (0%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           MKA G+ P++ TYN ++   G+A+       I+  +  +GLS +  TY++++  YG+A +
Sbjct: 1   MKAAGIVPSLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGF 60

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            +D   ++  M+++G++     YNT+L   A  G    A E+F DM+  E   PDS+T+ 
Sbjct: 61  FQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQ-DEGYSPDSYTYL 119

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           S+I   +   +  EAE +   M   G  P L     L+  +GKA   +D  R    + + 
Sbjct: 120 SLICAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFNHLVFAFGKAGLVEDATRLYMEIGKA 179

Query: 327 GITPD 331
           G+  D
Sbjct: 180 GLKSD 184



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 37/231 (16%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  ++ A  +++  +     +D   +S +I  YG AG F     ++  M+  G+KP  +
Sbjct: 22  KARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDAAKLFSRMQQEGIKPGKV 81

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---------------- 201
           TYN +LD   R+    + + ++ +M D G SP+  TY SL+ AY                
Sbjct: 82  TYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSLICAYTNCQRFQEAEDLLKRM 141

Query: 202 -------------------GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                              G+A   ED   +Y E+ + G++  +  + T+L +  D G T
Sbjct: 142 HRQGLAPGLVHFNHLVFAFGKAGLVEDATRLYMEIGKAGLKSDLACHRTMLKIYRDNGRT 201

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            E   +FE +++    +PD   +   I +    GK+ EA  +F  M   GF
Sbjct: 202 HEGILLFEKLQNY--IEPDGNIYRMAIDLYESAGKIVEARYIFQLMKSKGF 250


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ A+ LY R  +E   +D  +++ L      A   D  L V+ EM+   V P+++TY
Sbjct: 121 GKVDAAYELYKRLSDE-CSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTY 179

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTD----NGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           N LL    RA R  Q  T+ +EM +    + + P+  +Y +++  + +AR       V R
Sbjct: 180 NGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLR 239

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M + G   +V  +NTLL      G  DEA  +FE M    NC+P + T++ +IT  +  
Sbjct: 240 RMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM-VERNCEPTAVTYTVLITGHARA 298

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ +A   F +ML  G EPN++  T+LI     A + +D +  L R+   G  P+
Sbjct: 299 LRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPN 354



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 4/203 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TL+      G  D    ++E M     +P  +TY  L+    RA R  +    
Sbjct: 248 PNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDY 307

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M   G+ PN  TY +L+     A   ED L + + M   G + +V  Y  ++     
Sbjct: 308 FVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCK 367

Query: 239 VGYTDEAFEIFEDMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            G  + A ++F D   S    C+PDS+ +S++I     + K  EA   F  M+E+     
Sbjct: 368 GGQIERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAK 427

Query: 297 LFVLTSLIQCYGKAQRTDDVVRA 319
             +  ++       Q T+ V R 
Sbjct: 428 PHIYKAMADGLELVQETEKVERV 450



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 8/214 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRID--PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           RAG +E A  L +     K   D  P+ +S  T+I  +  A        V   M   G  
Sbjct: 188 RAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCS 247

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN++T+N LLD +    +  +   +++ M +    P   TY  L+  + RA   +     
Sbjct: 248 PNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDY 307

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + +M  +G++ +V  Y  L+    D    ++A EI + M SS   +P+  T++ +I    
Sbjct: 308 FVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRM-SSTGREPNVVTYTRVIGALC 366

Query: 274 CRGKVSEAEAMFNEML---EAGFEPNLFVLTSLI 304
             G++  A  +FN+ +    A  +P+ +  +++I
Sbjct: 367 KGGQIERATKLFNDAMGSRTAKCKPDSYAYSTII 400



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 4/171 (2%)

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TYN  L+ + +     + + I+ +M      PN  TY  +LR        +  L + +
Sbjct: 37  VFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQ 96

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M+ K +  +  + N L++     G  D A+E+++ +  S+ C  D  ++ +M+T   C+
Sbjct: 97  DMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRL--SDECSLDRISY-NMLTYGLCK 153

Query: 276 G-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
             ++  A A+F EM E    P+L     L+  Y +A R +  +  L  + E
Sbjct: 154 ADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIE 204



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +++  + +V  YN  L      G+  +A +IF+DM   E C P+ +T+  ++       K
Sbjct: 29  RQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKE-CLPNIYTYGIVLRGLCDDAK 87

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
              A  +  +M      P  F++  L+ C  K  + D       RL +
Sbjct: 88  TDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSD 135


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 4/244 (1%)

Query: 90  LKEKSYDTRAGNVEMAFGLYDRARN-EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 148
           +K+  YD+R+G+   A    D  +    W ID  ++   I   G  G ++  + +  EM 
Sbjct: 1   MKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMP 60

Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIY-KEMTDNGLSPNWNTYASLLRAYGRARYG 207
             G  P++  Y+ ++D   +  + W++   +  EM   G++P+  +Y + + A  R    
Sbjct: 61  TEGAAPDLSAYSAVIDACAKGGQ-WKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRW 119

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           +  L + REM  + +  +V +YN+ +  CA  G  + A  + ++M ++    PD  ++SS
Sbjct: 120 KIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEM-ATVGLAPDVISYSS 178

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            I+ C   G+  EA  +F +M  +G  P++    S I       R  + V  L ++P +G
Sbjct: 179 AISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVG 238

Query: 328 ITPD 331
           +TP+
Sbjct: 239 LTPN 242



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 3/213 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TI 178
           D  ++   I      G +   L++  EM A  V PN+I YN+ +++  +A + W++  ++
Sbjct: 102 DARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQ-WEIAVSL 160

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            KEM   GL+P+  +Y+S + A GR    E+ L ++ +M+  G+   V  Y + +A CA+
Sbjct: 161 VKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACAN 220

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA  +   + +     P+  ++SS+IT C+  G+   A  +  EM      PN+ 
Sbjct: 221 GGRWKEAVSLLRKIPTV-GLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNII 279

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              + I    K  R  + +  L  +P +G+ PD
Sbjct: 280 TYNAAIDACAKGGRWKEAIDLLREMPTVGLPPD 312



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 1/233 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG  E+A  L           D  ++S+ I   G  G ++  L ++E+M+  GV P++
Sbjct: 149 AKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDV 208

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITY + +       R  +  ++ +++   GL+PN  +Y+S++ A  +    +  L + RE
Sbjct: 209 ITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLRE 268

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK   +  ++  YN  +  CA  G   EA ++  +M +     PD  ++SS+I  CS   
Sbjct: 269 MKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTV-GLPPDVVSYSSVIDACSKGD 327

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           +  EA  +  EM   G  PN     S I    K  +  +    L  +P  G+T
Sbjct: 328 RWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVT 380



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 3/216 (1%)

Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R+ PN   ++  I      G +   +++  EM  +G+ P++++Y++++D   +  R  + 
Sbjct: 273 RLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEA 332

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             I +EM   GLSPN  +Y S + A  +    ++   + REM   G+   V  YN+ +A 
Sbjct: 333 IDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAA 392

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           CA      EA  +  +M +        +++SS I  C       +A+ +  EM   G  P
Sbjct: 393 CAKGEQWKEALALLREMPTV-GLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAP 451

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           N     S I   G+  + ++ V  L  +P +G++PD
Sbjct: 452 NEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPD 487



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 3/235 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  E A  L      E    D +A+S +I      G +   +    EM   G+ P+  
Sbjct: 45  RGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDAR 104

Query: 158 TYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +Y   ++   R  R W++   + +EM    ++PN   Y S + +  +A   E  +S+ +E
Sbjct: 105 SYGAAINACARGGR-WKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKE 163

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G+   V  Y++ ++ C   G  +EA E+FEDM++S    PD  T+ S I  C+  G
Sbjct: 164 MATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTS-GVAPDVITYGSAIAACANGG 222

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  EA ++  ++   G  PN+   +S+I    K  +    +  L  +  + + P+
Sbjct: 223 RWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPN 277



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 1/191 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L +  EM  +G+   + +Y++ +D  G+     + K + +EM   GL+PN   Y S + A
Sbjct: 403 LALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDA 462

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
            GR    E+ + + REM   G+   V  Y++ +A CA      EA  + ++M S+    P
Sbjct: 463 CGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEM-SAAGLAP 521

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D   ++S I  CS  G+   A A+  EM  AG  PN+   +S I    +  +  + +  L
Sbjct: 522 DLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALL 581

Query: 321 NRLPELGITPD 331
             +   G+ PD
Sbjct: 582 EEMRGSGVVPD 592



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 1/182 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           ++S+ I   G    +     +  EM  +G+ PN + YN+ +D  GR  +  +   + +EM
Sbjct: 420 SYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREM 479

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              GLSP+  +Y+S + A  +    ++ L+V +EM   G+   +  YN+ +  C+  G  
Sbjct: 480 PTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRW 539

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A  +  +M+++    P+  ++SS I  C   G+  E  A+  EM  +G  P++    +
Sbjct: 540 KMAVALLGEMRAA-GLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHA 598

Query: 303 LI 304
           L+
Sbjct: 599 LM 600



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++S+ I        +   L V +EM A G+ P++I YN+ +D   +  R      + 
Sbjct: 487 DVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALL 546

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
            EM   GL+PN  +Y+S + A  R    ++ +++  EM+  G+   V  Y+ L+  CA
Sbjct: 547 GEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALMVTCA 604



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 40/97 (41%)

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A    + MK       D  ++   IT C   G+  +A  +  EM   G  P+L   +++
Sbjct: 15  KALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAV 74

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           I    K  +    V  L  +P  GI PD R  G  +N
Sbjct: 75  IDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAIN 111


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRP 172
           +I PN   F+T+I      G  +   +V ++MK  G  PN++TYN L+D    MGR  + 
Sbjct: 225 KISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKM 284

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
           ++   I KEM +N +SPN  T+  L+  + +       L V+ EM+ +G++ +V  YN+L
Sbjct: 285 YKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSL 344

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +    + G  +EA  + ++M SS N +P+  T++++I     +  + EA  +F+ + + G
Sbjct: 345 VNGLCNEGKLNEAKVLLDEMLSS-NLKPNVITYNALINGYCKKKLLEEARELFDNIGKQG 403

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             PN+    +L+  Y K  + ++       + E G  P+     CL+
Sbjct: 404 LTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLI 450



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           ++ PN+  F+ LI  +    N    L V+EEM++ G+KP ++TYN+L++ +    +  + 
Sbjct: 298 KVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEA 357

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           K +  EM  + L PN  TY +L+  Y + +  E+   ++  + ++G+  +V  +NTLL  
Sbjct: 358 KVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHG 417

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFE 294
               G  +EAF + + +   +   P++ T++ +I +  CR GK+ E + + NEM   G +
Sbjct: 418 YCKFGKMEEAF-LLQKVMLEKGFLPNASTYNCLI-VGFCREGKMEEVKNLLNEMQCRGVK 475

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            +      LI  + + +      R ++ + + G+ P       LLN
Sbjct: 476 ADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLN 521



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 118/237 (49%), Gaps = 8/237 (3%)

Query: 101 NVEMAFGL--YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           N +   GL  + RA + ++++   + + L+        F G   VY+EM    + PN+IT
Sbjct: 173 NSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLIT 232

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYR 215
           +N +++ + +  +  +   +  +M   G  PN  TY +L+  Y   GR        ++ +
Sbjct: 233 FNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILK 292

Query: 216 EMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           EM E  +  +   +N L+   C D   +  A ++FE+M+ S+  +P   T++S++     
Sbjct: 293 EMVENKVSPNSVTFNVLIDGFCKDENLS-AALKVFEEMQ-SQGLKPTVVTYNSLVNGLCN 350

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            GK++EA+ + +EML +  +PN+    +LI  Y K +  ++     + + + G+TP+
Sbjct: 351 EGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPN 407



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 100/207 (48%), Gaps = 1/207 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N+  A  +++  +++  +     +++L+      G  +    + +EM +  +KPN+ITYN
Sbjct: 318 NLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYN 377

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L++   + K   + + ++  +   GL+PN  T+ +LL  Y +    E+   + + M EK
Sbjct: 378 ALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEK 437

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   + + YN L+      G  +E   +  +M+     + D+ T++ +I+    + +  +
Sbjct: 438 GFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQ-CRGVKADTVTYNILISAWCEKKEPKK 496

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           A  + +EML+ G +P+      L+  Y
Sbjct: 497 AARLIDEMLDKGLKPSHLTYNILLNGY 523



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 98/215 (45%), Gaps = 3/215 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ LI  Y      +    +++ +   G+ PN+IT+N LL    +  +  +  
Sbjct: 369 LKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF 428

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + K M + G  PN +TY  L+  + R    E+  ++  EM+ +G++     YN L++  
Sbjct: 429 LLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAW 488

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            +     +A  + ++M   +  +P   T++ ++      G +  A  +  +M + G   N
Sbjct: 489 CEKKEPKKAARLIDEM-LDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWAN 547

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +     LIQ Y +  + +D    LN + E G+ P+
Sbjct: 548 VVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPN 582



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 38/200 (19%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E AF L      + +  + + ++ LI  +   G  +   N+  EM+  GVK + +
Sbjct: 420 KFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTV 479

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+      K P +   +  EM D GL P+  TY  LL  Y         L++ ++M
Sbjct: 480 TYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQM 539

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-G 276
           +++G   +V  YN L+      GY                                CR G
Sbjct: 540 EKEGRWANVVTYNVLIQ-----GY--------------------------------CRKG 562

Query: 277 KVSEAEAMFNEMLEAGFEPN 296
           K+ +A  + NEMLE G  PN
Sbjct: 563 KLEDANGLLNEMLEKGLIPN 582



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 56/135 (41%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +E    L +  +    + D   ++ LI  +           + +EM   G+KP+ +
Sbjct: 455 REGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHL 514

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL+             + K+M   G   N  TY  L++ Y R    ED   +  EM
Sbjct: 515 TYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEM 574

Query: 218 KEKGMQLSVTLYNTL 232
            EKG+  + T Y  +
Sbjct: 575 LEKGLIPNRTTYEII 589


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  +E A  L D      ++ D   F+T ++ Y   G  +  L++ ++MK+ G+KP+++
Sbjct: 509 KASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIV 568

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D   +AK   +      E+  NGL PN   Y +L+  YGR     D + V   M
Sbjct: 569 TYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTM 628

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+Q +   YN+L+      G  +EA EIF      +N +     ++ +I      GK
Sbjct: 629 KHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQC-ILKNIELGVIGYTIIIQGFCKIGK 687

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + EA   F EM      PN    T+L+  Y K    ++  +  + +   GI PD
Sbjct: 688 IDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPD 741



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 148/329 (44%), Gaps = 9/329 (2%)

Query: 99  AGNVEMAFGLYDRARN-EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            G +++A  ++   R+      D   ++ +IK    AG  D    +  E++  G++P ++
Sbjct: 193 GGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVV 252

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGEDTLSVYRE 216
           TYN L+D + R+ R  +   +   M +  L P+  T+  L+    R  R+GE   +V +E
Sbjct: 253 TYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGE-VDAVLQE 311

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+  G+  +  +YN L+      G+  EA  +F++M  S+  +    T++ +       G
Sbjct: 312 MEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEM-VSKGIKQTVVTYNLIAKALCKEG 370

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ-RTDDVVRALNRLPELGITPDDR-F 334
           ++  AE + +EML AG   +  +  S++  + +   R D V+R +  +    + P+D   
Sbjct: 371 EMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVM 430

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-- 392
             C+  +  +   EE  ++   V      +       L     +G+  KEAT++  ++  
Sbjct: 431 TACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVD 490

Query: 393 -SKDVKKAYCNCLIDLCVNLNLLENACKL 420
              +  +   N +I  C   + +E A +L
Sbjct: 491 SGVEFDRITYNIMIQFCCKASKMEEAIQL 519



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 2/195 (1%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNT 193
           G+     + + E+   G  P++ T N L++ +G   +    + ++ EM D N ++P+  T
Sbjct: 159 GSLSCAADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYT 218

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           Y  +++A  RA   +    +  E++  G+Q +V  YN L+      G  +EAF++   M 
Sbjct: 219 YTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMV 278

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
                +P   TF  +I   +   +  E +A+  EM   G  PN  +   LI  + +    
Sbjct: 279 EGR-LRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHC 337

Query: 314 DDVVRALNRLPELGI 328
            + +R  + +   GI
Sbjct: 338 SEALRLFDEMVSKGI 352



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G VE AF L  R    + R     F  LI        F     V +EM+  G+ PN +
Sbjct: 263 RSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEV 322

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+    R     +   ++ EM   G+     TY  + +A  +    E    +  EM
Sbjct: 323 IYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEM 382

Query: 218 KEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
              GM +  +L+N+++A      G  D    +  +M  +   +P+    ++ I     RG
Sbjct: 383 LLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREM-VARFLKPNDAVMTACIQELCKRG 441

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           K  EA  ++  +L  G   N+    +LI    +     +  + L  + + G+  D
Sbjct: 442 KHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFD 496



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 112/255 (43%), Gaps = 39/255 (15%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E + I PN   ++ LI  +   G+    L +++EM + G+K  ++TYN +   + +    
Sbjct: 313 EGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEM 372

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASL----LRAYGR------------ARY---------- 206
              + I  EM   G++ + + + S+    LR  GR            AR+          
Sbjct: 373 EHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTA 432

Query: 207 ----------GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
                      E+   ++  +  KG+ +++   N L+          EA ++ + M  S 
Sbjct: 433 CIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDS- 491

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             + D  T++ MI  C    K+ EA  + ++M++ GF+P+LF   + ++ Y    + +D+
Sbjct: 492 GVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDI 551

Query: 317 VRALNRLPELGITPD 331
           +  L+++   G+ PD
Sbjct: 552 LHLLDQMKSEGLKPD 566



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 106/275 (38%), Gaps = 52/275 (18%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           V + M   GV+ + ITYN ++    +A +  +   +  +M   G  P+  T+ + LRAY 
Sbjct: 484 VLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYC 543

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
                ED L +  +MK +G++  +  Y T++      GY                     
Sbjct: 544 NLGKVEDILHLLDQMKSEGLKPDIVTYGTIID-----GY--------------------- 577

Query: 263 WTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
                      C+ K V +A     E+++ G  PN  +  +LI  YG+     D +  L+
Sbjct: 578 -----------CKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLD 626

Query: 322 RLPELGITPDDRFCGCLLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEG 379
            +   GI P       L+  M      E  K    +C+ K N +LG +   ++ +   + 
Sbjct: 627 TMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILK-NIELGVIGYTIIIQGFCKI 685

Query: 380 DFKKEATELFNSIS-KDVKK----------AYCNC 403
               EA   F  +  +D++           AYC C
Sbjct: 686 GKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKC 720


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 116/230 (50%), Gaps = 13/230 (5%)

Query: 114 NEKWR-----------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           +E WR           + P  +S ++K+ G A   +  L+V+ ++K     P    YN L
Sbjct: 141 DEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTL 200

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  +       ++  +Y E+   G  SP+  TY++L+ A+G+    +    ++ EMKE G
Sbjct: 201 ILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENG 260

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +  +  +Y T+LAM   +   + A  + E+MK  + C P  +T++ +I      G+V +A
Sbjct: 261 LHPTEKIYTTILAMYFKLNKVEAALRLVEEMK-GKGCAPTVFTYTELIKGLGKVGRVDDA 319

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++F  ML+ G +P++ ++ +LI   G+A R +D ++   ++  L   P+
Sbjct: 320 YSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPN 369



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 2/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI  +G    +D    +++EMK  G+ P    Y  +L    +  +      + 
Sbjct: 229 DTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLV 288

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM   G +P   TY  L++  G+    +D  S++  M + G +  V L N L+ +    
Sbjct: 289 EEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRA 348

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G  ++A ++F  M S + C P+  T++++I  I   +   SEA   F +M   G  P+ F
Sbjct: 349 GRLEDALKLFGKMDSLQ-CAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSF 407

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               LI  + K  R +  +  L  + E G  P
Sbjct: 408 TYAILIDGFCKTNRVEKALLLLEEMDEKGFPP 439



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 127/284 (44%), Gaps = 20/284 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
           +A  V  A  ++ + +  K       ++TLI +    G+ +    +Y E+ + G   P+ 
Sbjct: 171 KAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDT 230

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITY+ L+   G+ +R      ++ EM +NGL P    Y ++L  Y +    E  L +  E
Sbjct: 231 ITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEE 290

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK KG   +V  Y  L+     VG  D+A+ +F +M   + C+PD    +++I I    G
Sbjct: 291 MKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNM-LKDGCKPDVVLINNLINILGRAG 349

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR-TDDVVRALNRLPELGITPDDRFC 335
           ++ +A  +F +M      PN+    ++I+   +++    +      ++   GI P     
Sbjct: 350 RLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTY 409

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
             L++   +T +         VEK+         LLLEE D +G
Sbjct: 410 AILIDGFCKTNR---------VEKA--------LLLLEEMDEKG 436



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 112/235 (47%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           RAG +E A  L+ +  + +   +   ++T+IK ++ +          +E+MKA G+ P+ 
Sbjct: 347 RAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSS 406

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  L+D   +  R  +   + +EM + G  P    Y SL+ + GRA+  E    +++E
Sbjct: 407 FTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQE 466

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +KE   + S  +Y  ++    + G   +A ++F +MK    C PD +T++++++     G
Sbjct: 467 LKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKL-GCSPDVYTYNALMSGMIRAG 525

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + EA ++   M E G  P++     ++    K       +    ++ E  I PD
Sbjct: 526 MIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPD 580



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 2/224 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           + AF L+D  +          ++T++ +Y      +  L + EEMK  G  P + TY  L
Sbjct: 247 DFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTEL 306

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  +G+  R     +++  M  +G  P+     +L+   GRA   ED L ++ +M     
Sbjct: 307 IKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQC 366

Query: 223 QLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             +V  YNT++ A+        EA   FE MK++    P S+T++ +I       +V +A
Sbjct: 367 APNVVTYNTVIKAIFESKAPASEAALWFEKMKAN-GIAPSSFTYAILIDGFCKTNRVEKA 425

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
             +  EM E GF P      SLI   G+A+R +        L E
Sbjct: 426 LLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKE 469



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 3/194 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P++F  + LI  +      +  L + EEM   G  P    Y +L+D++GRAKR     
Sbjct: 402 IAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAAN 461

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +++E+ +N    +   YA +++ +G      D + ++ EMK+ G    V  YN L++  
Sbjct: 462 ELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGM 521

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  DEA  +  +M+ +  C PD  + + ++   +  G    A  MF +M E+   P+
Sbjct: 522 IRAGMIDEAHSLMRNMREN-GCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPD 580

Query: 297 LFVLTSLIQCYGKA 310
                +++ C  +A
Sbjct: 581 AVSYNTILSCLSRA 594



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 1/213 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   VE A  L +    + +   P A+ +LI   G A  ++    +++E+K    + +  
Sbjct: 418 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSAR 477

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++   G   R      ++ EM   G SP+  TY +L+    RA   ++  S+ R M
Sbjct: 478 VYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNM 537

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G    +  +N +L   A  G    A E+F  MK SE   PD+ +++++++  S  G 
Sbjct: 538 RENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESE-IMPDAVSYNTILSCLSRAGM 596

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
              A  +  EM   GFE +    +S+++  GK 
Sbjct: 597 FEMAAKLMREMKLKGFEYDSITYSSILEAVGKV 629



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 4/183 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA   E A  L+   +    R     ++ +IK +G  G     ++++ EMK +G  P++ 
Sbjct: 453 RAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVY 512

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  M RA    +  ++ + M +NG +P+  ++  +L    +    +  + ++ +M
Sbjct: 513 TYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKM 572

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE  +      YNT+L+  +  G  + A ++  +MK  +  + DS T+SS   I    GK
Sbjct: 573 KESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMK-LKGFEYDSITYSS---ILEAVGK 628

Query: 278 VSE 280
           V E
Sbjct: 629 VDE 631


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 111/223 (49%), Gaps = 11/223 (4%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TL+  +  +G  D    V+ EM+  GV PN+ TY  ++D M RA +  + + +  +M 
Sbjct: 253 YTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMI 312

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT- 242
           D+G  PN  T+ +++RA+ +A   E  L V+ +M++ G +  +  YN L+      G + 
Sbjct: 313 DSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSN 372

Query: 243 -DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D A ++   M  ++ C PD  TF+ M+ +    G V+ A  ++  M E   +PN+    
Sbjct: 373 LDAAMKMLTRM-IAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYN 431

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 336
            L++ +   +  D V+R    +   G+ P+        + FCG
Sbjct: 432 LLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNTYAALIEAFCG 474



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 1/153 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N++ A  +  R   +    D + F+ ++KL    GN +    +YE M+ +  KPN++TYN
Sbjct: 372 NLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYN 431

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMKE 219
            L+      K    V  I ++M   G+ PN NTYA+L+ A+ GR  +    +++   ++E
Sbjct: 432 LLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEE 491

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           K ++ +  +Y+ +LA+    G      E+ E M
Sbjct: 492 KALKPTKPVYDMVLALLRKAGQLRRHEELVEMM 524



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 2/199 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG--NFDGCLNVYEEMKAIGVKP 154
            +AG  E    ++++ R      D   ++ L++ +   G  N D  + +   M A G  P
Sbjct: 331 VKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIP 390

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  T+N +L  +         + +Y+ M +    PN  TY  L+R +   +  +  L + 
Sbjct: 391 DCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIK 450

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           R+M  +G++ +V  Y  L+      G    A     +M   +  +P    +  ++ +   
Sbjct: 451 RDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLALLRK 510

Query: 275 RGKVSEAEAMFNEMLEAGF 293
            G++   E +   M++ GF
Sbjct: 511 AGQLRRHEELVEMMVDRGF 529



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 5/175 (2%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  ++D + +       + +  EM +  +  +     +L+R Y RA    +   ++R M+
Sbjct: 148 YAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRME 207

Query: 219 EKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           E G       TL  +LL   +      EA  +F+  KS     PD   +++++      G
Sbjct: 208 EYGAGAPDPATL-ASLLGALSKKRLASEAQAMFDSYKSVFT--PDVVLYTTLVHAWCRSG 264

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++ EAE +F EM +AG  PN++  T++I    +A +       L ++ + G  P+
Sbjct: 265 RLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPN 319


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 116/230 (50%), Gaps = 1/230 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D     Y EM   G+ PN++TY++++  + +A+   +   + 
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ PN  TY S++  Y  +   ++ +   ++M   G++  V  YN+L+      
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++F+ M +    +P+  T+ +++   + +G + E   + + M+  G  PN +V
Sbjct: 318 GRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            + LI  Y K  + D  +   +++ + G+ PD    G ++ ++ ++ + E
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 1/200 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  +  L+D       + D   +STLI  Y  AG  D    +   M ++G+KP+ +
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   +  R      +++EM  +G+SP+  TY  +L+   + R       +Y  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G QL ++ YN +L        TDEA  +F+++  ++  Q ++ TF+ MI      G+
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD-LQLETRTFNIMIGALLKVGR 669

Query: 278 VSEAEAMFNEMLEAGFEPNL 297
             EA+ +F  +   G  P++
Sbjct: 670 NDEAKDLFAALSANGLVPDV 689



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 1/237 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + +   + TL++ Y T G       + + M   G+ P
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N   ++ L+    +  +  Q   ++ +M   GL+P+  TY +++    ++   ED +  +
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++ +     +YN+L+         D+A E+  +M     C  D+  F+S+I     
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL-DTIFFNSIIDSHCK 491

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+V E+E +F+ M+  G +P++   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 4/221 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG ++ A  L     +   + D   ++TLI  Y      +  L ++ EM++ GV P++IT
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +L  + + +R    K +Y  +T++G     +TY  +L    +    ++ L +++ + 
Sbjct: 587 YNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              +QL    +N ++     VG  DEA ++F  + S+    PD  T+S M      +G +
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAAL-SANGLVPDVRTYSLMAENLIEQGLL 705

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            E + +F  M E G   N  +L S+++   K  +  D+ RA
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVR---KLLQRGDITRA 743



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 136/322 (42%), Gaps = 25/322 (7%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +D   F+++I  +   G       +++ M  IGVKP++ITY+ L+D    A +  +   +
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
              M   G+ P+  TY +L+  Y +    ED L ++REM+  G+   +  YN +L     
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
              T  A E++  +  S   Q +  T++ ++          EA  MF  +     +    
Sbjct: 597 TRRTAAAKELYVGITES-GTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECV 357
               +I    K  R D+       L   G+ PD R    +  N++ Q   EEL  L   +
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSM 715

Query: 358 EK----SNSK-LGYVVKLLLEEQDI-----------EGDFKKEATE---LFNSISKDVKK 398
           E+    +NS+ L  +V+ LL+  DI           E  F  EA+      + +S    +
Sbjct: 716 EENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLSGGKYQ 775

Query: 399 AYCNC----LIDLCVNLNLLEN 416
            Y +C    +  LCVN  + EN
Sbjct: 776 EYHSCIRGGIFSLCVNSEVQEN 797



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 144 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  LL+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 201 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 258
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            PD  +++++I      G + +A   ++EML+ G  PN+   +S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 319 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 353
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 103/226 (45%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G VE A   +++  +E+       +++LI        +D    +  EM   G+  + I
Sbjct: 421 KSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTI 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N+++D+  +  R  + + ++  M   G+ P+  TY++L+  Y  A   ++   +   M
Sbjct: 481 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 540

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              GM+     YNTL+     +   ++A  +F +M+SS    PD  T++ ++       +
Sbjct: 541 VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS-GVSPDIITYNIILQGLFQTRR 599

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            + A+ ++  + E+G +  L     ++    K   TD+ +R    L
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645


>gi|259490098|ref|NP_001159276.1| uncharacterized protein LOC100304366 [Zea mays]
 gi|223943161|gb|ACN25664.1| unknown [Zea mays]
 gi|414590092|tpg|DAA40663.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
 gi|414590093|tpg|DAA40664.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
          Length = 535

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 12/242 (4%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+D  R   +  D   ++ ++  +  AG  D    V+ EM+  G+ PN+ TY  ++D
Sbjct: 225 AQALFDSCRT-VFTPDVVLYTAVVHAWCRAGRLDEAERVFTEMQQSGIMPNVYTYTAVID 283

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            M RA +  + + +  +M D+G  PN  T+ +++R++ +A   E  L V+ +M++   + 
Sbjct: 284 AMYRAGQVPRAQELLCQMIDSGCPPNTTTFNAIMRSHVKAGRSEQVLQVHNQMQQLRCEP 343

Query: 225 SVTLYNTLL-AMCAD-VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            V  YN L+   C    G  D A ++ + M +++ C PD  TF+ M  +    G +  A 
Sbjct: 344 DVITYNFLIETHCGKGQGNLDAALKVLDKM-TAKKCVPDCHTFNPMFRLLLVLGNIGAAH 402

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRF 334
            ++ +M E   +PN+     L++ + K +  D V+R    +   GI P+        + F
Sbjct: 403 KLYEKMRELQCKPNVVTYNCLLRLFNKEKSMDMVLRMKKDMDAEGIEPNMHTYAALIEAF 462

Query: 335 CG 336
           CG
Sbjct: 463 CG 464



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 1/154 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GN++ A  + D+   +K   D + F+ + +L    GN      +YE+M+ +  KPN++TY
Sbjct: 361 GNLDAALKVLDKMTAKKCVPDCHTFNPMFRLLLVLGNIGAAHKLYEKMRELQCKPNVVTY 420

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMK 218
           N LL    + K    V  + K+M   G+ PN +TYA+L+ A+ GR  +     ++   ++
Sbjct: 421 NCLLRLFNKEKSMDMVLRMKKDMDAEGIEPNMHTYAALIEAFCGRGNWKRAHTTLKEMIE 480

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           EK  + S  + + +L +    G   +  E+ E M
Sbjct: 481 EKSFKPSKQVRDMVLVLLRKAGQLKKHEELVELM 514



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 86/208 (41%), Gaps = 36/208 (17%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y +++  + + +     + +  EM +  +  +     +L R Y RA    +   ++R M+
Sbjct: 138 YASMIVLLAKHRHFGLARHLLDEMRERAVPISRQLILALTRRYVRAEMPSEAADLFRRME 197

Query: 219 EKG-----------------------------------MQLSVTLYNTLLAMCADVGYTD 243
           E G                                       V LY  ++      G  D
Sbjct: 198 EYGAGAPDPATLASLLAALSKKRLASEAQALFDSCRTVFTPDVVLYTAVVHAWCRAGRLD 257

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +F +M+ S    P+ +T++++I      G+V  A+ +  +M+++G  PN     ++
Sbjct: 258 EAERVFTEMQQS-GIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTTTFNAI 316

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++ + KA R++ V++  N++ +L   PD
Sbjct: 317 MRSHVKAGRSEQVLQVHNQMQQLRCEPD 344



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 94/215 (43%), Gaps = 5/215 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY--GTAGNFDGCLNVYEEMKAIGVKP 154
            +AG  E    ++++ +  +   D   ++ LI+ +     GN D  L V ++M A    P
Sbjct: 321 VKAGRSEQVLQVHNQMQQLRCEPDVITYNFLIETHCGKGQGNLDAALKVLDKMTAKKCVP 380

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  T+N +   +           +Y++M +    PN  TY  LLR + + +  +  L + 
Sbjct: 381 DCHTFNPMFRLLLVLGNIGAAHKLYEKMRELQCKPNVVTYNCLLRLFNKEKSMDMVLRMK 440

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           ++M  +G++ ++  Y  L+      G    A    ++M   ++ +P       ++ +   
Sbjct: 441 KDMDAEGIEPNMHTYAALIEAFCGRGNWKRAHTTLKEMIEEKSFKPSKQVRDMVLVLLRK 500

Query: 275 RGKVSEAEAMFNEMLEAGF---EPNLFVLTSLIQC 306
            G++ + E +   M++ GF    PN  + ++L  C
Sbjct: 501 AGQLKKHEELVELMVDRGFISQPPNDALWSALSAC 535



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
           + YAS++    + R+      +  EM+E+ + +S  L   L           EA ++F  
Sbjct: 136 DLYASMIVLLAKHRHFGLARHLLDEMRERAVPISRQLILALTRRYVRAEMPSEAADLFRR 195

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M+      PD  T +S++   S +   SEA+A+F+      F P++ + T+++  + +A 
Sbjct: 196 MEEYGAGAPDPATLASLLAALSKKRLASEAQALFDS-CRTVFTPDVVLYTAVVHAWCRAG 254

Query: 312 RTDDVVRALNRLPELGITPD 331
           R D+  R    + + GI P+
Sbjct: 255 RLDEAERVFTEMQQSGIMPN 274


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTI 178
           D   +S L+  Y  AG ++    + +EM+A GVKP+   ++ +L    R +  WQ    +
Sbjct: 338 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF-RDRGDWQKAFAV 396

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM  +G+ P+ + Y  ++  +G+       + V+  M+ +G++  V  +NTL+     
Sbjct: 397 LREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCK 456

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D A E+F++M+ S NC P + T++ MI +   + +    E M +EM E G  PN+ 
Sbjct: 457 GGRHDCAMELFKEMRES-NCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNII 515

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 516 TYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ 561



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 1/229 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  +++R R E    D   ++TLI  +   G  D  + +++EM+     P   TYN +++
Sbjct: 428 AMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMIN 487

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G  +R   V+T+  EM + GL PN  TY +L+  YGR+   ++ +     MK  G++ 
Sbjct: 488 LLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKP 547

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y+ L+   A  G  D A  + + M+ ++  +  +   +S+I       +V EA ++
Sbjct: 548 SPTMYHALVNAYAQRGLADHALNVVKAMR-ADGLEASTVVLNSLINAFGEDRRVVEAFSV 606

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
              M E  F P++   T+L++   + ++ D V      +   G  PD +
Sbjct: 607 LQFMKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRK 655



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 115/261 (44%), Gaps = 11/261 (4%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G  P SY++        S++     D   G+ + AF +         + D + ++ +I  
Sbjct: 369 GVKPSSYVF--------SRILAGFRDR--GDWQKAFAVLREMHASGVQPDRHFYNVMIDT 418

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +G        ++V+  M+  G++P+++T+N L+D   +  R      ++KEM ++   P 
Sbjct: 419 FGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPG 478

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY  ++   G         ++  EMKE+G+  ++  Y TL+ +    G   EA +  E
Sbjct: 479 TTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIE 538

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            MK ++  +P    + +++   + RG    A  +   M   G E +  VL SLI  +G+ 
Sbjct: 539 AMK-ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGED 597

Query: 311 QRTDDVVRALNRLPELGITPD 331
           +R  +    L  + E    PD
Sbjct: 598 RRVVEAFSVLQFMKENDFRPD 618



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L+   R          ++ +I L G    + G   +  EMK  G+ PN+I
Sbjct: 456 KGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNII 515

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  GR+ R  +     + M  +GL P+   Y +L+ AY +    +  L+V + M
Sbjct: 516 TYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM 575

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G++ S  + N+L+    +     EAF + + MK + + +PD  T+++++       +
Sbjct: 576 RADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKEN-DFRPDVITYTTLMKALIRVEQ 634

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +   ++ EM+ +G  P+
Sbjct: 635 FDKVPVIYEEMITSGCAPD 653



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 108/244 (44%), Gaps = 9/244 (3%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAMCAD 238
           + ++   P+  +Y+ LL +    R   D   + R   ++++  ++    L++ L++  A 
Sbjct: 186 IREHNFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSDLISAFAR 245

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 297
               D A E+    ++     P S   +++I+     G+V EAEA+F E   AG  +P  
Sbjct: 246 AALPDAALELLASAQAI-GLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRT 304

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVEC 356
               +L++ Y K     +    L+ + E G+ PD+     L++  T+  + E  + L++ 
Sbjct: 305 RAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKE 364

Query: 357 VEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLCVNLNL 413
           +E    K   YV   +L      GD++K    L    +  V+  + + N +ID     N 
Sbjct: 365 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNC 424

Query: 414 LENA 417
           L +A
Sbjct: 425 LGHA 428



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 79/180 (43%), Gaps = 3/180 (1%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYK---EMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           P++ +Y++LL ++   + P     + +   ++ D+ L P+   ++ L+ A+ RA   +  
Sbjct: 193 PDLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSDLISAFARAALPDAA 252

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           L +    +  G+         L++     G   EA  +F +   +   +P +  +++++ 
Sbjct: 253 LELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLK 312

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G +  AE + +EM E G  P+    + L+  Y +A R +     L  +   G+ P
Sbjct: 313 GYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKP 372


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 8/254 (3%)

Query: 85  PRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NF 137
           P  S+L  ++Y T      RAG  E A  L+   R +        ++ ++ +YG  G ++
Sbjct: 173 PPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSW 232

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
              + + EEM+A GV+P+  T + ++   GR     Q    ++++   G  P   TY +L
Sbjct: 233 PRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL 292

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           L+ +G+A    + L V +EM++ G Q     YN L    A  G+ +EA +  + M +S+ 
Sbjct: 293 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM-TSKG 351

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             P+++T+++++T  +  G+V EA A+F+ M + G+ PN+     +    GK  R   ++
Sbjct: 352 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 411

Query: 318 RALNRLPELGITPD 331
             L  +   G TP+
Sbjct: 412 EMLEEMSRSGCTPN 425



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 3/212 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++P+ F  ST+I   G  G  D  +  +E++KA G  P ++TYN LL   G+A    +  
Sbjct: 247 VEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEAL 306

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + KEM D+G  P+  TY  L   Y RA + E+       M  KG+  +   YNT++   
Sbjct: 307 RVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAY 366

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           A+VG  DEA  +F+ MK +    P+  T++ +  +   + + +    M  EM  +G  PN
Sbjct: 367 ANVGRVDEALALFDRMKKN-GYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPN 425

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
                +++   GK    D V R LN +   G+
Sbjct: 426 RVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGV 457



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 1/221 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L++++G AGN+   L V +EM+  G +P+ +TYN L  T  RA    +       MT
Sbjct: 289 YNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMT 348

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL PN  TY +++ AY      ++ L+++  MK+ G   +V  YN +  M        
Sbjct: 349 SKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFT 408

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
              E+ E+M S   C P+  T+++M+ +C  RG       + N M   G E +     +L
Sbjct: 409 AMLEMLEEM-SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTL 467

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           I  YG+        +  + +   G TP       LLNV+++
Sbjct: 468 ISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSR 508



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+  T++  Y   G  D  L +++ MK  G  PN+ TYN +   +G+  R   +  +
Sbjct: 354 PNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEM 413

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM+ +G +PN  T+ ++L   G+    +    V   MK  G++LS   YNTL++    
Sbjct: 414 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 473

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    AF+++++M SS    P   T+++++ + S +G  S A+++ ++ML+ GF+PN  
Sbjct: 474 CGSRTYAFKMYDEMISS-GFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQ 532

Query: 299 VLTSLIQCYGKA 310
             + L+QCY K 
Sbjct: 533 SYSLLLQCYAKG 544



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 11/263 (4%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 128
           ++G +P    W N       K   + Y TR  N   + G+          +  + ++TLI
Sbjct: 419 RSGCTPNRVTW-NTMLAVCGKRGMEDYVTRVLNGMKSCGV---------ELSRDTYNTLI 468

Query: 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
             YG  G+      +Y+EM + G  P + TYN LL+ + R       ++I  +M  NG  
Sbjct: 469 SAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFK 528

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           PN  +Y+ LL+ Y +        S+ +E+    +  S  +  TL+         +   + 
Sbjct: 529 PNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKA 588

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           F+++K+ +  +PD   F+SM+ + +  G  S+A  MF+ + ++G  P+L    SL+  Y 
Sbjct: 589 FQEVKA-QGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYA 647

Query: 309 KAQRTDDVVRALNRLPELGITPD 331
           K+  + +  + L +L    + PD
Sbjct: 648 KSNESWEAEKILKQLKSSQVKPD 670



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 1/243 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN   A  +     +   + D   ++ L   Y  AG F+      + M + G+ PN  
Sbjct: 298 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 357

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++       R  +   ++  M  NG  PN NTY  +    G+       L +  EM
Sbjct: 358 TYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM 417

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   +   +NT+LA+C   G  D    +   MKS    +    T++++I+     G 
Sbjct: 418 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSC-GVELSRDTYNTLISAYGRCGS 476

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            + A  M++EM+ +GF P L    +L+    +          ++++ + G  P+D+    
Sbjct: 477 RTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSL 536

Query: 338 LLN 340
           LL 
Sbjct: 537 LLQ 539



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   VE AF      + + ++ D   F++++ +Y   G +     +++ +K  G+ P++I
Sbjct: 581 RLEGVEKAF---QEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLI 637

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+D   ++   W+ + I K++  + + P+  +Y +++  + +    ++   +  EM
Sbjct: 638 TYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEM 697

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRG 276
              GM   V  Y+TL+   A +   +EA E+   M    N +P   T+  ++ + C  + 
Sbjct: 698 IADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYM-IHHNLKPMELTYRRVVDSYCKAK- 755

Query: 277 KVSEAEAMFNEM 288
           +  EA    +E+
Sbjct: 756 RYDEAREFLSEI 767



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/151 (18%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D  +      D   +++L+ +Y  +        + +++K+  VKP++++YN +++   
Sbjct: 623 MFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFC 682

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LSV 226
           +     + + I  EM  +G++P   TY +L+  Y       +   V   M    ++ + +
Sbjct: 683 KQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMEL 742

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           T    + + C    Y DEA E   ++  ++ 
Sbjct: 743 TYRRVVDSYCKAKRY-DEAREFLSEISDTDQ 772


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 8/254 (3%)

Query: 85  PRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NF 137
           P  S+L  ++Y T      RAG  E A  L+   R +        ++ ++ +YG  G ++
Sbjct: 173 PPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSW 232

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
              + + EEM+A GV+P+  T + ++   GR     Q    ++++   G  P   TY +L
Sbjct: 233 PRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL 292

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           L+ +G+A    + L V +EM++ G Q     YN L    A  G+ +EA +  + M +S+ 
Sbjct: 293 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM-TSKG 351

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             P+++T+++++T  +  G+V EA A+F+ M + G+ PN+     +    GK  R   ++
Sbjct: 352 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 411

Query: 318 RALNRLPELGITPD 331
             L  +   G TP+
Sbjct: 412 EMLEEMSRSGCTPN 425



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 3/212 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++P+ F  ST+I   G  G  D  +  +E++KA G  P ++TYN LL   G+A    +  
Sbjct: 247 VEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEAL 306

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + KEM D+G  P+  TY  L   Y RA + E+       M  KG+  +   YNT++   
Sbjct: 307 RVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAY 366

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           A+VG  DEA  +F+ MK +    P+  T++ +  +   + + +    M  EM  +G  PN
Sbjct: 367 ANVGRVDEALALFDRMKKN-GYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPN 425

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
                +++   GK    D V R LN +   G+
Sbjct: 426 RVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGV 457



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 1/221 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L++++G AGN+   L V +EM+  G +P+ +TYN L  T  RA    +       MT
Sbjct: 289 YNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMT 348

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL PN  TY +++ AY      ++ L+++  MK+ G   +V  YN +  M        
Sbjct: 349 SKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFT 408

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
              E+ E+M S   C P+  T+++M+ +C  RG       + N M   G E +     +L
Sbjct: 409 AMLEMLEEM-SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTL 467

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           I  YG+        +  + +   G TP       LLNV+++
Sbjct: 468 ISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSR 508



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+  T++  Y   G  D  L +++ MK  G  PN+ TYN +   +G+  R   +  +
Sbjct: 354 PNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEM 413

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM+ +G +PN  T+ ++L   G+    +    V   MK  G++LS   YNTL++    
Sbjct: 414 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 473

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    AF+++++M SS    P   T+++++ + S +G  S A+++ ++ML+ GF+PN  
Sbjct: 474 CGSRTYAFKMYDEMISS-GFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQ 532

Query: 299 VLTSLIQCYGKA 310
             + L+QCY K 
Sbjct: 533 SYSLLLQCYAKG 544



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 11/263 (4%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 128
           ++G +P    W N       K   + Y TR  N   + G+          +  + ++TLI
Sbjct: 419 RSGCTPNRVTW-NTMLAVCGKRGMEDYVTRVLNGMKSCGV---------ELSRDTYNTLI 468

Query: 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
             YG  G+      +Y+EM + G  P + TYN LL+ + R       ++I  +M  NG  
Sbjct: 469 SAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFK 528

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           PN  +Y+ LL+ Y +        S+ +E+    +  S  +  TL+         +   + 
Sbjct: 529 PNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKA 588

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           F+++K+ +  +PD   F+SM+ + +  G  S+A  MF+ + ++G  P+L    SL+  Y 
Sbjct: 589 FQEVKA-QGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYA 647

Query: 309 KAQRTDDVVRALNRLPELGITPD 331
           K+  + +  + L +L    + PD
Sbjct: 648 KSNESWEAEKILKQLKSSQVKPD 670



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 1/243 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN   A  +     +   + D   ++ L   Y  AG F+      + M + G+ PN  
Sbjct: 298 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 357

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++       R  +   ++  M  NG  PN NTY  +    G+       L +  EM
Sbjct: 358 TYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM 417

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   +   +NT+LA+C   G  D    +   MKS    +    T++++I+     G 
Sbjct: 418 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSC-GVELSRDTYNTLISAYGRCGS 476

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            + A  M++EM+ +GF P L    +L+    +          ++++ + G  P+D+    
Sbjct: 477 RTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSL 536

Query: 338 LLN 340
           LL 
Sbjct: 537 LLQ 539



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   VE AF      + + ++ D   F++++ +Y   G +     +++ +K  G+ P++I
Sbjct: 581 RLEGVEKAF---QEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLI 637

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+D   ++   W+ + I K++  + + P+  +Y +++  + +    ++   +  EM
Sbjct: 638 TYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEM 697

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRG 276
              GM   V  Y+TL+   A +   +EA E+   M    N +P   T+  ++ + C  + 
Sbjct: 698 IADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYM-IHHNLKPMELTYRRVVDSYCKAK- 755

Query: 277 KVSEAEAMFNEM 288
           +  EA    +E+
Sbjct: 756 RYDEAREFLSEI 767



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/151 (18%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D  +      D   +++L+ +Y  +        + +++K+  VKP++++YN +++   
Sbjct: 623 MFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFC 682

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LSV 226
           +     + + I  EM  +G++P   TY +L+  Y       +   V   M    ++ + +
Sbjct: 683 KQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMEL 742

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           T    + + C    Y DEA E   ++  ++ 
Sbjct: 743 TYRRVVDSYCKAKRY-DEAREFLSEISDTDQ 772


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            +++A GL+   +      D   ++ L+   G +   +  L V EEM   G +   +TYN 
Sbjct: 896  IDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNT 955

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            ++  + +++R  Q   +Y  +   G SP   TY  LL    +A   ED  +++ EM E G
Sbjct: 956  IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 1015

Query: 222  MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSE 280
             + + T+YN LL      G T++   +F+DM   +   PD  +++ +I T+C   G++++
Sbjct: 1016 CKANCTIYNILLNGHRIAGNTEKVCHLFQDM-VDQGINPDIKSYTIIIDTLCKA-GQLND 1073

Query: 281  AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLL 339
                F ++LE G EP+L     LI   GK++R ++ V   N + + GI P+   +   +L
Sbjct: 1074 GLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLIL 1133

Query: 340  NVMTQTPKEELGKLVE 355
            ++       E GK+ E
Sbjct: 1134 HLGKAGKAAEAGKMYE 1149



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 115/235 (48%), Gaps = 1/235 (0%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             ++  +E A  LY    ++ +   P  +  L+     AG  +   N++ EM   G K N 
Sbjct: 961  VKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANC 1020

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
              YN LL+    A    +V  ++++M D G++P+  +Y  ++    +A    D L+ +R+
Sbjct: 1021 TIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQ 1080

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + E G++  +  YN L+         +EA  +F +M+  +   P+ +T++S+I      G
Sbjct: 1081 LLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ-KKGIVPNLYTYNSLILHLGKAG 1139

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K +EA  M+ E+L  G++PN+F   +LI+ Y  +  TD    A  R+   G  P+
Sbjct: 1140 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 123/263 (46%), Gaps = 2/263 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+ +    +++  + + +  +  A++ +I      G     L +++EMK  G+ P   +Y
Sbjct: 439 GDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSY 498

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N+L+    +A R      ++K M  +G  PN  T+   +  YG++      +  Y  MK 
Sbjct: 499 NSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 558

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG+   V   N +L   A  G    A  +F ++K+     PD+ T++ MI  CS   K  
Sbjct: 559 KGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM-GVSPDTITYTMMIKCCSKASKFD 617

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA  +F +M+E    P++  + SLI    KA R D+  R   +L E+ + P D     LL
Sbjct: 618 EAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLL 677

Query: 340 NVMTQTPK-EELGKLVECVEKSN 361
             + +  K +E+  L+E +  SN
Sbjct: 678 AGLGREGKVKEVMHLLEEMYHSN 700



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 3/213 (1%)

Query: 121 PNAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN ++ +  I  YG +G     +  YE MK+ G+ P+++  N +L  + ++ R    K +
Sbjct: 528 PNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRV 587

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E+   G+SP+  TY  +++   +A   ++ + ++ +M E      V   N+L+     
Sbjct: 588 FHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYK 647

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEA+ IF  +K   N +P   T+++++      GKV E   +  EM  + + PNL 
Sbjct: 648 AGRGDEAWRIFYQLKEM-NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 706

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +++ C  K    +D +  L  +   G  PD
Sbjct: 707 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD 739



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PN +S    I++ G A  FD    +  +M+  G KP++IT+  L+  +  A R 
Sbjct: 347 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 406

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
              K ++ +M  +   P+  TY +LL  +G     +  + ++  MK  G   +V  Y  +
Sbjct: 407 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 466

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +     VG   EA E+F++MK  +   P+ ++++S+I+      +  +A  +F  M   G
Sbjct: 467 IDALCQVGRVFEALEMFDEMK-QKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHG 525

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +PN +     I  YGK+  +   ++    +   GI PD
Sbjct: 526 PKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 564



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 118/251 (47%), Gaps = 6/251 (2%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D  + +  + +   F+ +    G  G           MK  G+  N  TYN L+  + 
Sbjct: 237 VFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLV 296

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           ++    +   +Y+ M  +G+ P+  TY+ L+ A+G+ R  E  L + REM+  G++ +V 
Sbjct: 297 KSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVY 356

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y   + +       DEA+ I   M+ +E C+PD  T + +I +    G++S+A+ +F +
Sbjct: 357 SYTICIRVLGQAKRFDEAYRILAKME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 415

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           M ++  +P+     +L+  +G    +  V+   N +   G   +      +++ + Q   
Sbjct: 416 MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQ--- 472

Query: 348 EELGKLVECVE 358
             +G++ E +E
Sbjct: 473 --VGRVFEALE 481



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 9/231 (3%)

Query: 109 YDRARNEKWRI--------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           +DR   E +R+            +S L+  +G   + +  L +  EM+A GVKPN+ +Y 
Sbjct: 300 FDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYT 359

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
             +  +G+AKR  +   I  +M + G  P+  T+  L++    A    D   V+ +MK+ 
Sbjct: 360 ICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKS 419

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
             +     Y TLL    D G +    EI+  MK ++    +   ++++I      G+V E
Sbjct: 420 DQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMK-ADGYNDNVVAYTAVIDALCQVGRVFE 478

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A  MF+EM + G  P  +   SLI  + KA R  D +     +   G  P+
Sbjct: 479 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPN 529



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 6/216 (2%)

Query: 119 IDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P+  +    L+G A  G       V+ E+KA+GV P+ ITY  ++    +A +  +  
Sbjct: 561 IVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAV 620

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I+ +M +N   P+     SL+    +A  G++   ++ ++KE  ++ +   YNTLLA  
Sbjct: 621 KIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGL 680

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEP 295
              G   E   + E+M  S N  P+  T+++++  C C+ G V++A  M   M   G  P
Sbjct: 681 GREGKVKEVMHLLEEMYHS-NYPPNLITYNTILD-CLCKNGAVNDALDMLYSMTTKGCIP 738

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +L    ++I    K +R ++      ++ ++ + PD
Sbjct: 739 DLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 773



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 113/268 (42%), Gaps = 34/268 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   + A+ +  +  NE  + D    + LI++   AG      +V+ +MK    KP+ +
Sbjct: 367 QAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRV 426

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD  G       V  I+  M  +G + N   Y +++ A  +     + L ++ EM
Sbjct: 427 TYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEM 486

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM--------------------KSSEN 257
           K+KG+      YN+L++         +A E+F+ M                    KS E+
Sbjct: 487 KQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGES 546

Query: 258 CQ--------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            +              PD    ++++   +  G++  A+ +F+E+   G  P+    T +
Sbjct: 547 IKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMM 606

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I+C  KA + D+ V+    + E    PD
Sbjct: 607 IKCCSKASKFDEAVKIFYDMIENNCVPD 634



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A ++LI     AG  D    ++ ++K + ++P   TYN LL  +GR  +  +V  + 
Sbjct: 634 DVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 693

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM  +   PN  TY ++L    +     D L +   M  KG    ++ YNT++      
Sbjct: 694 EEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 753

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE-MLEAGFEPNLF 298
              +EAF IF  MK      PD  T  +++      G + EA  +  +  L+ G + +  
Sbjct: 754 ERYNEAFSIFCQMKKV--LIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRS 811

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF-CGCLLNVMTQTPKEELGKLVE 355
              SL++   K    +  +     +   GIT DD F C  + ++  Q    E  +LV+
Sbjct: 812 SCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVK 869


>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 553

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 138/295 (46%), Gaps = 42/295 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+ +I +Y  AG+++     +  M   G++   +TYN+L+      K   +V  IY
Sbjct: 242 DQKMFNMMIYMYKKAGSYEKARKTFALMAERGIQQTTVTYNSLMSFETDYK---EVSNIY 298

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M    L P+  +YA L+ AYG+AR  E+ L+V+ EM + G++ +   YN LL   +  
Sbjct: 299 DQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSIS 358

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF- 298
           G  ++A  +F+ M+  +   PD  ++++M++       +  AE  F  +++  FEPN+  
Sbjct: 359 GMVEQAQTVFKSMR-RDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVVT 417

Query: 299 ----------------------------------VLTSLIQCYGKAQRTDDVVRALNRLP 324
                                             +LT+++  YGK+   D  V     + 
Sbjct: 418 YGTLIKGYAKINDLEMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEME 477

Query: 325 ELGITPDDRFCGCLLNV-MTQTPKEELGKLVECVEKSN--SKLGYVVKLLLEEQD 376
             GI PD +    LL++  T   +EE  +LV    ++N  SK+  +VKL+ E+++
Sbjct: 478 SNGIPPDQKAKNVLLSLPKTDEEREEANELVGHFSENNSLSKVNGIVKLVDEDEE 532



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 103/230 (44%), Gaps = 7/230 (3%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  LI  YG  G+F+G   V   M   G  PN+++   L++  G+  R    +
Sbjct: 131 WDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYVPNVVSQTALMEAYGKGGRYNNAE 190

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
            I++ M   G  P+  TY  +L+ +    + R  E+        +   ++    ++N ++
Sbjct: 191 AIFRRMQKWGPEPSAFTYQIILKTFVQGNKYREAEELFDNLLNDENSPLKPDQKMFNMMI 250

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            M    G  ++A + F  M +    Q  + T++S+++  +   +VS    ++++M  A  
Sbjct: 251 YMYKKAGSYEKARKTFALM-AERGIQQTTVTYNSLMSFETDYKEVSN---IYDQMQRADL 306

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            P++     L+  YGKA+R ++ +     + + G+ P  +    LL+  +
Sbjct: 307 RPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFS 356



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 36/189 (19%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           +YD+ +    R D  +++ L+  YG A   +  L V+EEM   GV+P    YN LLD   
Sbjct: 297 IYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFS 356

Query: 168 RAKRPWQVKTIYKEM-----------------------------------TDNGLSPNWN 192
            +    Q +T++K M                                     +   PN  
Sbjct: 357 ISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVV 416

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           TY +L++ Y +    E  +  Y EM  +G++ + T+  T++      G  D A   F++M
Sbjct: 417 TYGTLIKGYAKINDLEMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEM 476

Query: 253 KSSENCQPD 261
           +S+    PD
Sbjct: 477 ESN-GIPPD 484


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 132/262 (50%), Gaps = 5/262 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A+ L+++  +     +P  +++LI+ +   G  +    +++E+   G KP++ 
Sbjct: 204 KKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLT 263

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + I++++   G  P+  +Y+ L+    +A    +T +++  M
Sbjct: 264 LLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM 323

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRG 276
           K++G  L    YN ++      G   +A+EI E+MK  E C QP   T+ +++   +   
Sbjct: 324 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK--EKCVQPTVATYGAIVDGLAKID 381

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ EA  +F E    G E N+ + +SLI  +GK  R D+    L  + + G+TP+     
Sbjct: 382 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 441

Query: 337 CLLNVMTQTPKEELGKLVECVE 358
            LL+ + +   EE+ + + C +
Sbjct: 442 SLLDALVKA--EEINEALVCFQ 461



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 126/257 (49%), Gaps = 2/257 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +  A  L+ +   E+      A++T+I  YG+AG F+    + E ++  G  P+++
Sbjct: 30  KAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVV 89

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           ++N++L  +G+ ++  +  ++++ M  +   PN +TY  ++         E+   +  EM
Sbjct: 90  SFNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEM 148

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +   +  ++   N ++         +EA++IFE   S   C PD  T+ S+I     +G+
Sbjct: 149 EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFES-ASQRGCNPDCVTYCSLIDGLGKKGQ 207

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V EA  +F +ML+AG   N  V TSLI+ +    R +D  +    L   G  PD      
Sbjct: 208 VDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNT 267

Query: 338 LLNVMTQTPKEELGKLV 354
            ++ + +  + E G+++
Sbjct: 268 YMDCVFKAGEVEKGRMI 284



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 111/236 (47%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+AG       ++   + + + +D  A++ ++  +  +G       + EEMK   V+P +
Sbjct: 308 TKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTV 367

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  ++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   +  E
Sbjct: 368 ATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEE 427

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           M +KG+  +V  +N+LL         +EA   F+ MK  + C P+++T+S +I  +C  +
Sbjct: 428 MMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK-CPPNTYTYSILINGLCRVQ 486

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + +M + G  PN+   T++I    K     D      R    G  PD
Sbjct: 487 -KYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 541



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 96/188 (51%), Gaps = 2/188 (1%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           + E+KA G+KP+ ++Y +++  + +A R  + + ++ +M      P    Y +++  YG 
Sbjct: 6   FHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGS 65

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           A   ED   +   ++E+G   SV  +N++L         DEA  +FE MK  ++ +P+S 
Sbjct: 66  AGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK--KDAEPNSS 123

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T++ +I +    G+V EA  + +EM  A   PNL  +  ++    KA++ ++  +     
Sbjct: 124 TYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESA 183

Query: 324 PELGITPD 331
            + G  PD
Sbjct: 184 SQRGCNPD 191



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 95/177 (53%), Gaps = 1/177 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A+++   ++   +S+LI  +G  G  D    + EEM   G+ PN+ T+N+LLD
Sbjct: 386 AYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLD 445

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M +    PN  TY+ L+    R +        +++M+++G+  
Sbjct: 446 ALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVP 505

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +V  Y T+++  A VG   +A+ +FE  K++    PD+ +F+++I   S   +  EA
Sbjct: 506 NVVTYTTMISGLAKVGNITDAYSLFERFKANGGI-PDAASFNALIEGMSNANRAMEA 561



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 113/251 (45%), Gaps = 5/251 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G VE A+ + D    E   + PN  +   ++     A   +    ++E     G  P+ 
Sbjct: 135 GGRVEEAYRILDEM--EHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDC 192

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +L+D +G+  +  +   ++++M D G + N   Y SL+R +      ED   +++E
Sbjct: 193 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKE 252

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +  +G +  +TL NT +      G  ++   IFED++S     PD  ++S +I   +  G
Sbjct: 253 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY-GFLPDVRSYSILIHGLTKAG 311

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  E   +F+ M + GF  +     +++  + K+ +       L  + E  + P     G
Sbjct: 312 QARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYG 371

Query: 337 CLLNVMTQTPK 347
            +++ + +  +
Sbjct: 372 AIVDGLAKIDR 382



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/404 (20%), Positives = 177/404 (43%), Gaps = 31/404 (7%)

Query: 50  ETQSSNPTKHSQNPQY-PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNV 102
           E + S P  ++ N     +G  G    +Y  +     R       S+++      +   V
Sbjct: 45  EAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKV 104

Query: 103 EMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           + A  L++  + +    +PN+  ++ +I +    G  +    + +EM+   + PN++T N
Sbjct: 105 DEALSLFEVMKKDA---EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 161

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D + +A++  +   I++  +  G +P+  TY SL+   G+    ++   ++ +M + 
Sbjct: 162 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 221

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   +  +Y +L+      G  ++  +IF+++     C+PD    ++ +      G+V +
Sbjct: 222 GHNANPVVYTSLIRNFFIHGRKEDGHKIFKEL-IRRGCKPDLTLLNTYMDCVFKAGEVEK 280

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              +F ++   GF P++   + LI    KA +  +     + + + G   D R    +++
Sbjct: 281 GRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVD 340

Query: 341 VMTQTPK-----EELGKLVE-CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF---NS 391
              ++ K     E L ++ E CV+ + +  G +V  L +   ++     EA  LF    S
Sbjct: 341 GFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLD-----EAYMLFEEAKS 395

Query: 392 ISKDVKKAYCNCLIDLCVNLNLLENACKLLE----LGLTLEVYT 431
              ++     + LID    +  ++ A  +LE     GLT  VYT
Sbjct: 396 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 439



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 2/131 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN ++  +L+     A   +  L  ++ MK +   PN  TY+ L++ + R ++  +  
Sbjct: 433 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 492

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             +++M   GL PN  TY +++    +     D  S++   K  G       +N L+   
Sbjct: 493 VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 552

Query: 237 ADVGYTDEAFE 247
           ++     EA++
Sbjct: 553 SNANRAMEAYQ 563


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 1/230 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   E A  +Y R + E+ R +   F+ +I +YG A      + V+ EMK+IG KPN+ 
Sbjct: 400 KARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNIC 459

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R     + + +++EM   G  P+   Y +L+ AY RA   +    ++  M
Sbjct: 460 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM 519

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN L+      G  ++A  +FE++K      P   +   ++   +  G 
Sbjct: 520 QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELK-QRGMSPTMKSHMLLLAAHARSGN 578

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            +  E +  ++ ++G  P+ F L +++  Y +A R DD+ R L  +   G
Sbjct: 579 ATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRG 628



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L++ Y  AG+      V  EM+  G+ PN   YN  LD + +A+   +   +Y+ 
Sbjct: 354 DTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQR 413

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M       N  T+  ++  YG+A+    ++ V+ EMK  G + ++  Y  L+   A  G 
Sbjct: 414 MKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGL 473

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A E+FE+M+ + + +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 474 CEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYN 532

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
            L+  YG+A   +D       L + G++P
Sbjct: 533 ILVDAYGRAGLHEDAEAVFEELKQRGMSP 561



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 123/264 (46%), Gaps = 6/264 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           AG++  A G+    R     I PNA  ++  +     A   +  + VY+ MK    + N 
Sbjct: 366 AGSLHRAEGVISEMREHG--IPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANT 423

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T+  +++  G+AK+P     ++ EM   G  PN  TY +L+ A+ R    E    V+ E
Sbjct: 424 ETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEE 483

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G +  V  YN L+   +  G    A EIF  M+    C+PD  +++ ++      G
Sbjct: 484 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHM-GCEPDRASYNILVDAYGRAG 542

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
              +AEA+F E+ + G  P +     L+  + ++         + +L + G+TPD     
Sbjct: 543 LHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALN 602

Query: 337 CLLNVMTQTPK-EELGKLVECVEK 359
            +LN   +  + +++ +L+  +E+
Sbjct: 603 AMLNAYARAGRLDDMERLLAAMER 626



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 1/179 (0%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P++I YN L+++ G+ ++  + ++IY  + +    P  +TYA LLRAY  A        
Sbjct: 315 RPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEG 374

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           V  EM+E G+  + T+YN  L        T++A E+++ MK  E C+ ++ TF+ MI + 
Sbjct: 375 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMK-RERCRANTETFTLMINVY 433

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               +   +  +FNEM   G +PN+   T+L+  + +    +        + + G  PD
Sbjct: 434 GKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 492



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 100/215 (46%), Gaps = 1/215 (0%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           +R D   ++ LI+ YG     +   ++Y  +      P   TY  LL     A    + +
Sbjct: 314 FRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAE 373

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM ++G+ PN   Y + L    +AR  E  + VY+ MK +  + +   +  ++ + 
Sbjct: 374 GVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVY 433

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                   + ++F +MKS   C+P+  T+++++   +  G   +AE +F EM +AG EP+
Sbjct: 434 GKAKQPMSSMKVFNEMKSI-GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 492

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++   +L++ Y +A          + +  +G  PD
Sbjct: 493 VYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPD 527



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 5/232 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG  + A  ++   ++     D  +++ L+  YG AG  +    V+EE+K  G+ P M
Sbjct: 504 SRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTM 563

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    R+    + + +  ++  +GL+P+     ++L AY RA   +D   +   
Sbjct: 564 KSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAA 623

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+ +G    V  YN  +      GY     E      ++     D  T+++ +   + R 
Sbjct: 624 MERRG-DADVGTYNVAVNAYGRAGYVGR-MEAAFAAVAARGLAADVVTWTARMGAYARRK 681

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV---VRALNRLPE 325
           +      M  EM++AG  P+      L+      ++ + V   VR++++ P+
Sbjct: 682 EYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHKKPK 733


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 2/222 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +AF   IK +  AG     + V+E M+  G    + ++N LL  +       + + ++ +
Sbjct: 261 DAFKVAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDK 320

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M     SP+  +Y +L+ A+  AR   +   V+ EM EKGM+  V ++NT++        
Sbjct: 321 MLGQ-YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQR 379

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             EA ++FE MK+ +   P+ WT++ +I     RGK+  A   F EM EA  +P++   T
Sbjct: 380 QHEAVKMFELMKA-KGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYT 438

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            L+  YG A+R D V   L  + + G  PD R    L+ ++T
Sbjct: 439 CLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLT 480



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 103/217 (47%), Gaps = 2/217 (0%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           ++  D  +++ L+  +  A N      V+ EM   G+KP+++ +N +++ + R +R  + 
Sbjct: 324 QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEA 383

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             +++ M   G  PN  TY  L+  + +    +  +  + EM+E   Q  V  Y  LL  
Sbjct: 384 VKMFELMKAKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVG 443

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
             +    D    + E+M + + C PD+ T++++I + + R    +A  ++ +M++ G +P
Sbjct: 444 YGNAKRMDRVTAVLEEM-TQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDP 502

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPD 331
            +     +++ Y    R   +  A+   +   GI PD
Sbjct: 503 TIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPD 539



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 6/178 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ LI  +   G  D  +  +EEM+    +P++ TY  LL   G AKR  +V  +
Sbjct: 397 PNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAV 456

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--MC 236
            +EMT  G  P+  TY +L++     +  +D   +Y++M +KG+  ++  YN ++     
Sbjct: 457 LEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFL 516

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
            D  Y      ++E+M     C PD  +++  I+     G+  EA     EM+  G +
Sbjct: 517 GDRNYA-MGCAVWEEMHRRGIC-PDVNSYTVFISGHIRHGRPEEAYKYIEEMINKGMK 572



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++MA   ++  +  + + D   ++ L+  YG A   D    V EEM   G  P+  
Sbjct: 411 KRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDAR 470

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYR 215
           TYN L+  +   K P     IYK+M   GL P  +TY  ++++Y  G   Y     +V+ 
Sbjct: 471 TYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFLGDRNYAMGC-AVWE 529

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           EM  +G+   V  Y   ++     G  +EA++  E+M
Sbjct: 530 EMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEM 566



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYRE---------------------------- 216
            G +    TY  +L   G+ R  E  +++ +E                            
Sbjct: 220 GGFTHTTITYCKMLLILGKTRQFESMVALLQEMGKAGTLSMDAFKVAIKSFAAAGEIKNA 279

Query: 217 ------MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MI 269
                 M++ G    V  +N LL   A+ G   EA ++F+ M    +  PD  ++++ M+
Sbjct: 280 VGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDKMLGQYS--PDLRSYTALML 337

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
             C+ R  V EA  ++NEMLE G +P++ V  ++I+   + QR  + V+    +   G  
Sbjct: 338 AWCNARNLV-EAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPP 396

Query: 330 PD 331
           P+
Sbjct: 397 PN 398


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            +++A GL+   +      D   ++ L+   G +   +  L V EEM   G +   +TYN 
Sbjct: 850  IDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNT 909

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            ++  + +++R  Q   +Y  +   G SP   TY  LL    +A   ED  +++ EM E G
Sbjct: 910  IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 969

Query: 222  MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSE 280
             + + T+YN LL      G T++   +F+DM   +   PD  +++ +I T+C   G++++
Sbjct: 970  CKANCTIYNILLNGHRIAGNTEKVCHLFQDM-VDQGINPDIKSYTIIIDTLCKA-GQLND 1027

Query: 281  AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLL 339
                F ++LE G EP+L     LI   GK++R ++ V   N + + GI P+   +   +L
Sbjct: 1028 GLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLIL 1087

Query: 340  NVMTQTPKEELGKLVE 355
            ++       E GK+ E
Sbjct: 1088 HLGKAGKAAEAGKMYE 1103



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 1/239 (0%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             ++  +E A  LY    ++ +   P  +  L+     AG  +   N++ EM   G K N 
Sbjct: 915  VKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANC 974

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
              YN LL+    A    +V  ++++M D G++P+  +Y  ++    +A    D L+ +R+
Sbjct: 975  TIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQ 1034

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + E G++  +  YN L+         +EA  +F +M+  +   P+ +T++S+I      G
Sbjct: 1035 LLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ-KKGIVPNLYTYNSLILHLGKAG 1093

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            K +EA  M+ E+L  G++PN+F   +LI+ Y  +  TD    A  R+   G  P+   C
Sbjct: 1094 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTC 1152



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 2/240 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A++ +I      G     L +++EMK  G+ P   +YN+L+    +A R      ++K M
Sbjct: 416 AYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYM 475

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             +G  PN  T+   +  YG++      +  Y  MK KG+   V   N +L   A  G  
Sbjct: 476 DIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRL 535

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A  +F ++K+     PD+ T++ MI  CS   K  EA  +F +M+E    P++ V+ S
Sbjct: 536 GMAKRVFHELKAM-GVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNS 594

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361
           LI    KA R D+  +   +L E+ + P D     LL  + +  K +E+  L+E +  SN
Sbjct: 595 LIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN 654



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 104/213 (48%), Gaps = 3/213 (1%)

Query: 121 PNAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN ++ +  I  YG +G     +  YE MK+ G+ P+++  N +L  + ++ R    K +
Sbjct: 482 PNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRV 541

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E+   G+SP+  TY  +++   +A   ++ + ++ +M E      V + N+L+     
Sbjct: 542 FHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYK 601

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEA++IF  +K   N +P   T+++++      GKV E   +  EM  + + PNL 
Sbjct: 602 AGRGDEAWQIFYQLKEM-NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 660

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +++ C  K    +D +  L  +   G  PD
Sbjct: 661 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD 693



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PN +S    I++ G A  FD    +  EM+  G KP++IT+  L+  +  A R 
Sbjct: 301 EAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRI 360

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
              K ++ +M  +   P+  TY +LL  +      +  + ++  MK  G   +V  Y  +
Sbjct: 361 SDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAV 420

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +     VG   EA E+F++MK  +   P+ ++++S+I+      +  +A  +F  M   G
Sbjct: 421 IDALCQVGRVFEALEMFDEMK-QKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHG 479

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +PN +     I  YGK+  +   ++    +   GI PD
Sbjct: 480 PKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 518



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 95/191 (49%), Gaps = 1/191 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L VY+ M   GV P++ TY+ L+   G+ +    V  + +EM  +G+ PN  +Y   +R 
Sbjct: 259 LEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRV 318

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
            G+AR  ++   +  EM+ +G +  V  +  L+ +  D G   +A ++F  MK S+  +P
Sbjct: 319 LGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQ-KP 377

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  T+ +++   +  G+      ++N M   G+  N+   T++I    +  R  + +   
Sbjct: 378 DRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMF 437

Query: 321 NRLPELGITPD 331
           + + + GI P+
Sbjct: 438 DEMKQKGIVPE 448



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +S L+  +G   + +  L +  EM+A GVKPN+ +Y   +  +G+A+R  +   I  EM 
Sbjct: 277 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEME 336

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G  P+  T+  L++    A    D   V+ +MK+   +     Y TLL   AD G + 
Sbjct: 337 NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQ 396

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
              EI+  MK ++    +   ++++I      G+V EA  MF+EM + G  P  +   SL
Sbjct: 397 SVMEIWNAMK-ADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSL 455

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I  + KA R  D +     +   G  P+
Sbjct: 456 ISGFLKADRFGDALELFKYMDIHGPKPN 483



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 118/251 (47%), Gaps = 6/251 (2%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D  + +  + +   F+ +    G  G           MK  G+  N  TYN L+  + 
Sbjct: 191 VFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLV 250

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           ++    +   +YK M  +G+ P+  TY+ L+ A+G+ R  E  L + REM+  G++ +V 
Sbjct: 251 KSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVY 310

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y   + +       DEA+ I  +M+ +E C+PD  T + +I +    G++S+A+ +F +
Sbjct: 311 SYTICIRVLGQARRFDEAYRILAEME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 369

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           M ++  +P+     +L+  +     +  V+   N +   G   +      +++ + Q   
Sbjct: 370 MKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQ--- 426

Query: 348 EELGKLVECVE 358
             +G++ E +E
Sbjct: 427 --VGRVFEALE 435



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 6/216 (2%)

Query: 119 IDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P+  +    L+G A  G       V+ E+KA+GV P+ ITY  ++    +A +  +  
Sbjct: 515 IVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAV 574

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I+ +M +N   P+     SL+    +A  G++   ++ ++KE  ++ +   YNTLLA  
Sbjct: 575 KIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGL 634

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEP 295
              G   E   + E+M  S N  P+  T+++++  C C+ G V++A  M   M   G  P
Sbjct: 635 GREGKVKEVMHLLEEMYHS-NYPPNLITYNTILD-CLCKNGAVNDALDMLYSMTTKGCIP 692

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +L    ++I    K +R ++      ++ ++ + PD
Sbjct: 693 DLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 727



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 117/284 (41%), Gaps = 34/284 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   + A+ +     NE  + D    + LI++   AG      +V+ +MK    KP+ +
Sbjct: 321 QARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRV 380

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD          V  I+  M  +G + N   Y +++ A  +     + L ++ EM
Sbjct: 381 TYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEM 440

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM--------------------KSSEN 257
           K+KG+      YN+L++         +A E+F+ M                    KS E+
Sbjct: 441 KQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGES 500

Query: 258 CQ--------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            +              PD    ++++   +  G++  A+ +F+E+   G  P+    T +
Sbjct: 501 IKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMM 560

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           I+C  KA + D+ V+    + E    PD      L++ + +  +
Sbjct: 561 IKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGR 604



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D    ++LI     AG  D    ++ ++K + ++P   TYN LL  +GR  +  +V  + 
Sbjct: 588 DVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 647

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM  +   PN  TY ++L    +     D L +   M  KG    ++ YNT++      
Sbjct: 648 EEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 707

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE-MLEAGFEPNLF 298
              +EAF IF  MK      PD  T  +++      G + EA  +  E  L+ G + +  
Sbjct: 708 ERYNEAFSIFCQMKKV--LIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRS 765

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF-CGCLLNVMTQTPKEELGKLVE 355
              SL++   K   T+  +     +   GIT DD F C  + ++  Q    E  +LV+
Sbjct: 766 SCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVK 823



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 19/230 (8%)

Query: 215  REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            ++ K  G+ L    YN+L+    D    D A  +F +MK    C PD +T++ ++     
Sbjct: 823  KKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKEL-GCGPDEFTYNLLLDAMGK 881

Query: 275  RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
              ++ E   +  EM   G+E       ++I    K++R +  +     L   G +P    
Sbjct: 882  SMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCT 941

Query: 335  CGCLLNVMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
             G LL+ + +  + E       +++E   K+N     +  +LL    I G+ +K    LF
Sbjct: 942  YGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT---IYNILLNGHRIAGNTEK-VCHLF 997

Query: 390  -----NSISKDVKKAYCNCLIDLCVNLNL---LENACKLLELGLTLEVYT 431
                   I+ D+ K+Y   +  LC    L   L    +LLE+GL  ++ T
Sbjct: 998  QDMVDQGINPDI-KSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLIT 1046


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 116/230 (50%), Gaps = 1/230 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D     Y EM   G+ PN++TY++++  + +A+   +   + 
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ PN  TY S++  Y  +   ++ +   ++M   G++  V  YN+L+      
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++F+ M +    +P+  T+ +++   + +G + E   + + M+  G  PN +V
Sbjct: 318 GRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            + LI  Y K  + D  +   +++ + G+ PD    G ++ ++ ++ + E
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 1/200 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  +  L+D       + D   +STLI  Y  AG  D    +   M ++G+KP+ +
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   +  R      +++EM  +G+SP+  TY  +L+   + R       +Y  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G QL ++ YN +L        TDEA  +F+++  ++  Q ++ TF+ MI      G+
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD-LQLETRTFNIMIGALLKVGR 669

Query: 278 VSEAEAMFNEMLEAGFEPNL 297
             EA+ +F  +   G  P++
Sbjct: 670 NDEAKDLFAALSANGLVPDV 689



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 1/237 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + +   + TL++ Y T G       + + M   G+ P
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N   ++ L+    +  +  Q   ++ +M   GL+P+  TY +++    ++   ED +  +
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++ +     +YN+L+         D+A E+  +M     C  D+  F+S+I     
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL-DTIFFNSIIDSHCK 491

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+V E+E +F+ M+  G +P++   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 4/221 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG ++ A  L     +   + D   ++TLI  Y      +  L ++ EM++ GV P++IT
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +L  + + +R    K +Y  +T++G     +TY  +L    +    ++ L +++ + 
Sbjct: 587 YNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              +QL    +N ++     VG  DEA ++F  + S+    PD  T+S M      +G +
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAAL-SANGLVPDVRTYSLMAENLIEQGLL 705

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            E + +F  M E G   N  +L S+++   K  +  D+ RA
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVR---KLLQRGDITRA 743



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 136/322 (42%), Gaps = 25/322 (7%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +D   F+++I  +   G       +++ M  IGVKP++ITY+ L+D    A +  +   +
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
              M   G+ P+  TY +L+  Y +    ED L ++REM+  G+   +  YN +L     
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
              T  A E++  +  S   Q +  T++ ++          EA  MF  +     +    
Sbjct: 597 TRRTAAAKELYVGITES-GTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECV 357
               +I    K  R D+       L   G+ PD R    +  N++ Q   EEL  L   +
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSM 715

Query: 358 EK----SNSK-LGYVVKLLLEEQDI-----------EGDFKKEATE---LFNSISKDVKK 398
           E+    +NS+ L  +V+ LL+  DI           E  F  EA+      + +S    +
Sbjct: 716 EENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLSGGKYQ 775

Query: 399 AYCNC----LIDLCVNLNLLEN 416
            Y +C    +  LCVN  + EN
Sbjct: 776 EYHSCIRGGIFSLCVNSEVQEN 797



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 144 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  LL+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 201 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 258
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            PD  +++++I      G + +A   ++EML+ G  PN+   +S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 319 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 353
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 103/226 (45%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G VE A   +++  +E+       +++LI        +D    +  EM   G+  + I
Sbjct: 421 KSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTI 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N+++D+  +  R  + + ++  M   G+ P+  TY++L+  Y  A   ++   +   M
Sbjct: 481 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 540

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              GM+     YNTL+     +   ++A  +F +M+SS    PD  T++ ++       +
Sbjct: 541 VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS-GVSPDIITYNIILQGLFQTRR 599

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            + A+ ++  + E+G +  L     ++    K   TD+ +R    L
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 3/204 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PNAF+   LI  +G  G+     N+YEEM  +G  P++IT+ +L+D   R  +  +  
Sbjct: 339 IKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSL 398

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++ E+    LSPN  T+A L  A  +     +     R++K + +     +YN ++   
Sbjct: 399 KLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGF 458

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  DEA  I  +M+  + C+PD  T++ +I     +G++SEA ++FN ML  G  P+
Sbjct: 459 CKAGNVDEANVILAEME-EKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPD 517

Query: 297 LFVLTSLIQCYGKAQRTDDVVRAL 320
              +TSLI C  KA   ++  R +
Sbjct: 518 SITMTSLISCLLKAGMPNEAYRIM 541



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 15/237 (6%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A  +YD    +    D +    L+     AG F+            GV+ +++ Y
Sbjct: 151 GFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFN-----IARTWVDGVEFSLVVY 205

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT--YASLLRAYGRARYGEDTLSVYREM 217
           N LL+ + R  +  +    ++E    GL   +++  +  L+R   R    +    ++ EM
Sbjct: 206 NKLLNQLVRGNQVDEAVCFFREQM--GLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEM 263

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G    V  YNTL+     V   D   ++ +++ S  +  PD  T++S+I+     GK
Sbjct: 264 RGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGK 323

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE---LGITPD 331
           + +A  +FN M+ +G +PN F    LI  +GK     D+V A N   E   LG  PD
Sbjct: 324 MEKASILFNNMISSGIKPNAFTFNILINGFGK---VGDMVSAENMYEEMLLLGCPPD 377



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 104/249 (41%), Gaps = 37/249 (14%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R   V+ A   +          D  +F+ LI+     G  D    ++ EM+  G  P++
Sbjct: 213 VRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDV 272

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ITYN L++   R     +   + KE+ + N LSP+  TY S++  Y +            
Sbjct: 273 ITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCK------------ 320

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
                                  +G  ++A  +F +M SS   +P+++TF+ +I      
Sbjct: 321 -----------------------LGKMEKASILFNNMISS-GIKPNAFTFNILINGFGKV 356

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G +  AE M+ EML  G  P++   TSLI  + +  + +  ++  + L    ++P++   
Sbjct: 357 GDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTF 416

Query: 336 GCLLNVMTQ 344
             L N + +
Sbjct: 417 AILTNALCK 425


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 121/245 (49%), Gaps = 4/245 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A+  +   + E  R D    + +I   G AG  D  + +++EM  +   P+++
Sbjct: 312 KAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVV 371

Query: 158 TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +  +K R  +V + ++ M ++G+SP+  TY+ L+  + +    E  + +  E
Sbjct: 372 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 431

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCR 275
           M EKG       Y +L+         D A E+F+++K  ENC    S  ++ MI      
Sbjct: 432 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELK--ENCGSSSSRVYAVMIKHLGKA 489

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G++ +A  MF+EM + G  P+++   +L+    +    D+ +  + R+ E G  PD    
Sbjct: 490 GRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSY 549

Query: 336 GCLLN 340
             +LN
Sbjct: 550 NIILN 554



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 2/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EM   + +  RN    + P   S ++++ G A      + ++ ++K    +P    YN++
Sbjct: 141 EMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSM 200

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  +    +  +V  +Y EM+  G   P+  TY++L+ A+ +    +  + +  EMK+ G
Sbjct: 201 IIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNG 260

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           MQ +  +Y  L+A+   +     A  +FE+M+  + C+PD +T++ +I      G++ EA
Sbjct: 261 MQPTTKIYTMLVALFFKLNDVHGALSLFEEMR-HQYCRPDVFTYTELIRGLGKAGRIDEA 319

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              F EM   G  P+  V+ ++I   GKA R DD ++    +  L   P
Sbjct: 320 YHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIP 368



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 96/212 (45%), Gaps = 2/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI  +   G  D  + +  EMK  G++P    Y  L+    +        +++
Sbjct: 229 DTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLF 288

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM      P+  TY  L+R  G+A   ++    + EM+ +G +    + N ++      
Sbjct: 289 EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKA 348

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G  D+A ++F++M  +  C P   T++++I  +   + + SE  + F  M E+G  P+ F
Sbjct: 349 GRLDDAMKLFQEM-GTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSF 407

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             + LI  + K  R +  +  L  + E G  P
Sbjct: 408 TYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 439



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 2/229 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L +  ++   +     ++ L+ L+    +  G L+++EEM+    +P++ 
Sbjct: 242 KLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVF 301

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +G+A R  +    + EM   G  P+     +++   G+A   +D + +++EM
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEM 361

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
                  SV  YNT++ A+        E    FE MK S    P S+T+S +I       
Sbjct: 362 GTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKES-GISPSSFTYSILIDGFCKTN 420

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++ +A  +  EM E GF P      SLI   GKA+R D        L E
Sbjct: 421 RMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 85/170 (50%), Gaps = 4/170 (2%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-LLRAYGRARYGEDTLSVYRE 216
           TY  L+  +   ++  ++  + +EM  N +     T  S ++R  G A+     ++++ +
Sbjct: 125 TYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQ 184

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K +  Q +   YN+++ M    G  ++  E++ +M +  +C PD+ T+S++I+     G
Sbjct: 185 IKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLG 244

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           +   A  + NEM + G +P   + T L+  + K    +DV  AL+   E+
Sbjct: 245 RRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFK---LNDVHGALSLFEEM 291


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 127/237 (53%), Gaps = 1/237 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+MA G++ +  ++  +     ++T+I     A   D    V+++M   GVKP+ +
Sbjct: 272 KAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHV 331

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++D + +A+   + + ++++M D G+ P+  TY  ++    +A+  +    V+++M
Sbjct: 332 TYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQM 391

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG++ +   YN L+      G  +E  +  ++M S+ + +PD +T+  ++      GK
Sbjct: 392 IDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEM-SAHDLEPDVFTYGLLLDYLCKNGK 450

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            +EA ++F+ M+  G +P++ +   ++  YGK     ++   LN +   GI+P+ R 
Sbjct: 451 CNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRI 507



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 126/250 (50%), Gaps = 21/250 (8%)

Query: 107 GLYDRARNEKWR---------------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 151
           GL DR R E+ R                D  +++ +I  +   G  D   +++ EM   G
Sbjct: 164 GLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---G 220

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           V P+++TYN ++D + +A+   + + ++++M + G+ PN  TY +++    +A+  +   
Sbjct: 221 VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAE 280

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT- 270
            V+++M +KG++ S   YNT++         D A  +F+ M      +PD  T++++I  
Sbjct: 281 GVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQM-IDRGVKPDHVTYNTIIDG 339

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +C  +  + +AE +F +M++ G +P+    T +I    KAQ  D       ++ + G+ P
Sbjct: 340 LCKAQA-IDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKP 398

Query: 331 DDRFCGCLLN 340
           ++    CL++
Sbjct: 399 NNGTYNCLIH 408



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 129/251 (51%), Gaps = 10/251 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G V+ A+ L+      +  + P+   ++T+I     A   D   +V+++M   GVKPN +
Sbjct: 207 GQVDKAYSLF-----LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNV 261

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++D + +A+     + ++++M D G+ P+  TY +++    +A+  +    V+++M
Sbjct: 262 TYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQM 321

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
            ++G++     YNT++         D+A  +F+ M   +  +PD+ T++ +I  +C  + 
Sbjct: 322 IDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQM-IDKGVKPDNLTYTIIIDGLCKAQ- 379

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V  AE +F +M++ G +PN      LI  Y    + ++VV+ +  +    + PD    G
Sbjct: 380 SVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYG 439

Query: 337 CLLNVMTQTPK 347
            LL+ + +  K
Sbjct: 440 LLLDYLCKNGK 450



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 3/214 (1%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN   F+T+I  Y      D  ++++ +MK  G+ PN++TY  L+D + +  R     
Sbjct: 501 ISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAV 560

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             + +M + G++PN   + SL+         E    ++ EM  +G++  +  +NT+L   
Sbjct: 561 LQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNL 620

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   EA  + + M      +PD  +++++I       ++ EA  + + M+ AG +PN
Sbjct: 621 CKEGRVMEARRLIDSM-VCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPN 679

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +    +L+  Y KA R D+       +   G+TP
Sbjct: 680 IVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTP 713



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 1/237 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A +V+ A G++ +  ++  + +   ++ LI  Y + G ++  +   +EM A  ++P++ 
Sbjct: 377 KAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVF 436

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD + +  +  + ++++  M   G+ P+   Y  +L  YG+     +   +   M
Sbjct: 437 TYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLM 496

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+  +  ++NT++   A     DE   IF  MK  +   P+  T+ ++I      G+
Sbjct: 497 VANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMK-QQGLSPNVVTYGTLIDALCKLGR 555

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           V +A   FN+M+  G  PN  V  SL+       + + V      +   GI PD  F
Sbjct: 556 VDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVF 612



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 111/237 (46%), Gaps = 1/237 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  L+D    +  +     +  ++  YG  G      ++   M A G+ P
Sbjct: 444 YLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISP 503

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N   +N ++    +     +V  I+ +M   GLSPN  TY +L+ A  +    +D +  +
Sbjct: 504 NHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQF 563

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M  +G+  +  ++N+L+     V   ++  E+F +M  ++  +PD   F++++     
Sbjct: 564 NQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEM-LNQGIRPDIVFFNTVLCNLCK 622

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+V EA  + + M+  G +P++    +LI  +  A R D+ V+ L+ +   G+ P+
Sbjct: 623 EGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPN 679



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 121/279 (43%), Gaps = 13/279 (4%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+    N+  R D   F+T++      G       + + M  +G+KP++I+YN L+D   
Sbjct: 597 LFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHC 656

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            A R  +   +   M   GL PN  +Y +LL  Y +A   ++   ++REM  KG+   V 
Sbjct: 657 FASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVE 716

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS--SMITICSCRGKV-SEAEAM 284
            YNT+L      G   EA E++ +M  S       W+    S+I    C+     EA  +
Sbjct: 717 TYNTILNGLFRSGRFSEARELYVNMIKSRKL----WSICTYSIILDGFCKNNCFDEAFKI 772

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMT 343
           F  +     + ++     +I    K  R +D +     +P  G+ P       +  N++ 
Sbjct: 773 FQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIE 832

Query: 344 QTPKEELGKLVECVEKSNSK-----LGYVVKLLLEEQDI 377
           +   EEL  L   +EKS +      L  +++ LL+  +I
Sbjct: 833 EGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEI 871



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 115/272 (42%), Gaps = 39/272 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV-YEEMKAIGVKPNM 156
           R G +E+ F  +       WR+D    + L+K           ++V   +M  +G +  +
Sbjct: 96  RIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGV 155

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN------------------------------- 185
           ++YN LL  +   +R  + + +   M D                                
Sbjct: 156 VSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSL 215

Query: 186 ----GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
               G+SP+  TY +++    +A+  +    V+++M EKG++ +   YNT++        
Sbjct: 216 FLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQE 275

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            D A  +F+ M   +  +P + T++++I  +C  +  V  AE +F +M++ G +P+    
Sbjct: 276 VDMAEGVFQKM-VDKGVKPSNVTYNTIIDGLCKAQA-VDRAEGVFQQMIDRGVKPDHVTY 333

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            ++I    KAQ  D       ++ + G+ PD+
Sbjct: 334 NTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDN 365



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 94/194 (48%), Gaps = 1/194 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A   +++  NE    +   F++L+    T   ++    ++ EM   G++P+++
Sbjct: 552 KLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIV 611

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N +L  + +  R  + + +   M   GL P+  +Y +L+  +  A   ++ + +   M
Sbjct: 612 FFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGM 671

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++ ++  YNTLL      G  D A+ +F +M   +   P   T+++++      G+
Sbjct: 672 VSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREM-LRKGVTPGVETYNTILNGLFRSGR 730

Query: 278 VSEAEAMFNEMLEA 291
            SEA  ++  M+++
Sbjct: 731 FSEARELYVNMIKS 744


>gi|255086920|ref|XP_002505383.1| predicted protein [Micromonas sp. RCC299]
 gi|226520653|gb|ACO66641.1| predicted protein [Micromonas sp. RCC299]
          Length = 175

 Score =  104 bits (260), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 100/173 (57%), Gaps = 1/173 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+TLIK  G +G +D  L +Y+ MK+ GV  N IT + L++  G++K+  +   +++EM 
Sbjct: 1   FTTLIKTCGRSGGWDKALELYQAMKSRGVAANTITCSALINACGKSKQWEKALDVFREMK 60

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G+  N  TY++L+ A  + R  +  L V+RE +  G++     Y T++A C      D
Sbjct: 61  ADGVEANIFTYSALISACAKGRQLDKALEVFRECQVSGVEPDAITYGTVIAACEKGKRCD 120

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           EA +IF  M+ ++N   +  T++S+++ C   G+  +A  +F +M + G +P+
Sbjct: 121 EALDIFRQMR-AKNVDANVITYNSVLSACDRAGRADDALDIFAQMRKEGVKPD 172



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 91/173 (52%), Gaps = 1/173 (0%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +  L+ T GR+    +   +Y+ M   G++ N  T ++L+ A G+++  E  L V+REMK
Sbjct: 1   FTTLIKTCGRSGGWDKALELYQAMKSRGVAANTITCSALINACGKSKQWEKALDVFREMK 60

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G++ ++  Y+ L++ CA     D+A E+F + + S   +PD+ T+ ++I  C    + 
Sbjct: 61  ADGVEANIFTYSALISACAKGRQLDKALEVFRECQVS-GVEPDAITYGTVIAACEKGKRC 119

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EA  +F +M     + N+    S++    +A R DD +    ++ + G+ PD
Sbjct: 120 DEALDIFRQMRAKNVDANVITYNSVLSACDRAGRADDALDIFAQMRKEGVKPD 172



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 89/164 (54%), Gaps = 1/164 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G  + A  LY   ++     +    S LI   G +  ++  L+V+ EMKA GV+ N+ 
Sbjct: 10  RSGGWDKALELYQAMKSRGVAANTITCSALINACGKSKQWEKALDVFREMKADGVEANIF 69

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+    + ++  +   +++E   +G+ P+  TY +++ A  + +  ++ L ++R+M
Sbjct: 70  TYSALISACAKGRQLDKALEVFRECQVSGVEPDAITYGTVIAACEKGKRCDEALDIFRQM 129

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           + K +  +V  YN++L+ C   G  D+A +IF  M+  E  +PD
Sbjct: 130 RAKNVDANVITYNSVLSACDRAGRADDALDIFAQMR-KEGVKPD 172


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 152/323 (47%), Gaps = 15/323 (4%)

Query: 113 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEM------KAIGVKPNMITYNNLLD 164
           R +K    PNA  + TL+K     GN    L +++EM        I  KP +I+Y+ ++D
Sbjct: 191 RMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIID 250

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + + +R  + + +++EM   G++P   +Y SL+  +      E+   ++ EM  +G+Q 
Sbjct: 251 ALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQP 310

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  +N L+ +    G   EA ++ E M       P+  T++S+I      G ++ A  +
Sbjct: 311 NVVTFNVLIDVLCKEGKVIEAKDLLEVM-IQRGIVPNLLTYNSLIEGFCLVGDLNSAREL 369

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           F  M   G EP++   T LI  Y K  + ++ ++  N + ++G  PD +  G LL  + Q
Sbjct: 370 FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ 429

Query: 345 TPKEELGKLVECVEKSNSKLG--YVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAY 400
             K    K +  V K     G  Y+  + L      G    EA ELFN + S ++K    
Sbjct: 430 GGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCL-FEAMELFNKLKSYNIKLDIE 488

Query: 401 C-NCLIDLCVNLNLLENACKLLE 422
           C NCLID       LE A +L E
Sbjct: 489 CFNCLIDGLCKAGKLETAWELFE 511



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 18/297 (6%)

Query: 42  QKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGN 101
           Q+ S+ L   ++ N T  +Q  Q+ H          ++ NP  P +S     S   +  +
Sbjct: 61  QQLSMFLHNCKTGNITA-TQAFQFFH--------LMMYSNPTPPLSSFTHLLSGLAKIKH 111

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
               F LY++ R      D    + L+            L V   +   G  P+++TY  
Sbjct: 112 YSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTT 171

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK- 220
           L+  +    R  +   ++  M   G +PN  TY +L++   R       L +++EM    
Sbjct: 172 LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDS 231

Query: 221 ---GMQLS--VTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
              G+     V  Y+ ++ A+C D    DEA ++FE+MK  +   P   +++S+I    C
Sbjct: 232 SLYGINFKPVVISYSIIIDALCKD-RREDEARDLFEEMK-VQGMTPTVISYTSLIHGFCC 289

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            GK  EA+ +FNEM+  G +PN+     LI    K  +  +    L  + + GI P+
Sbjct: 290 GGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPN 346



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 107/233 (45%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G++  A  L+    ++    D   ++ LI  Y      +  + +Y  M  +G +P++ T
Sbjct: 360 VGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKT 419

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  LL  + +  +    K ++  M   G+  +   Y   L    +     + + ++ ++K
Sbjct: 420 YGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLK 479

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              ++L +  +N L+      G  + A+E+FE +   E  QPD  T++ MI      G+V
Sbjct: 480 SYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEE-LQPDVVTYNIMIHEFCRGGQV 538

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +A  +F +M + G  P+     +LI+ + ++++ + VV  L+ + +  ++ D
Sbjct: 539 VKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLD 591



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G  E A  L++   N+  + +   F+ LI +    G      ++ E M   G+ PN++T
Sbjct: 290 GGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLT 349

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN+L++           + ++  M   G  P+   Y  L+  Y +    E+ + +Y  M 
Sbjct: 350 YNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGML 409

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G +  V  Y  LL      G   +A ++F  MK       D + +   +      G +
Sbjct: 410 QVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVY-GIPGDLYIYGIFLNGLCKNGCL 468

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EA  +FN++     + ++     LI    KA + +       +LP+  + PD
Sbjct: 469 FEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPD 521



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 66/124 (53%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+++ ++   ++D   F+ LI     AG  +    ++E++    ++P+++TYN ++ 
Sbjct: 471 AMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIH 530

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R  +  +   ++++M  NG +P+  TYA+L+R +  ++  E  + +   M ++ + L
Sbjct: 531 EFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSL 590

Query: 225 SVTL 228
            V +
Sbjct: 591 DVNI 594



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNE 287
           +  LL+  A + +  + F ++  M+ S    PD  T + ++  C C   +V E  A+   
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLS-GISPDCCTLNILLN-CLCNVNRVGEGLAVMAG 156

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +L  G+ P++   T+LI+      R         R+ +LG TP+    G L+  + +T
Sbjct: 157 ILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRT 214


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTI 178
           D   +S L+  Y  AG ++    + +EM+A GVKP+   ++ +L    R +  WQ    +
Sbjct: 193 DEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF-RDRGEWQKAFAV 251

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM  +G+ P+ + Y  ++  +G+       +  +  M+E+G++  V  +NTL+     
Sbjct: 252 LREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCK 311

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D A E+F++M+ S NC   + T++ MI +     +    EAM  EM E G  PN+ 
Sbjct: 312 GGRHDRAIELFDEMRES-NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNII 370

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             T+L+  YG++ R  + V  +  +   G+ P       L+N   Q
Sbjct: 371 TYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQ 416



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 110/229 (48%), Gaps = 1/229 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A   +DR R E    D   ++TLI  +   G  D  + +++EM+         TYN +++
Sbjct: 283 AMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMIN 342

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G  +R   V+ +  EM + GL PN  TY +L+  YGR+   ++ +     MK  G++ 
Sbjct: 343 LLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKP 402

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y+ L+   A  G  D A  + + M+ ++  +  +   +S+I       +++EA ++
Sbjct: 403 SSTMYHALVNAYAQRGLADHALNVVKAMR-ADGLEASTVVLNSLINAFGEDRRIAEAFSV 461

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
              M E G  P++   T+L++   + ++ + V      +   G  PD +
Sbjct: 462 LQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRK 510



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 118/261 (45%), Gaps = 11/261 (4%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G  P SY++        S++     D   G  + AF +         R D + ++ +I  
Sbjct: 224 GVKPSSYVF--------SRILAGFRDR--GEWQKAFAVLREMHASGVRPDRHFYNVMIDT 273

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +G        ++ ++ M+  G++P+++T+N L+D   +  R  +   ++ EM ++     
Sbjct: 274 FGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLG 333

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY  ++   G  +  E   ++  EMKE+G+  ++  Y TL+ +    G   EA +  E
Sbjct: 334 TTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIE 393

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            MK ++  +P S  + +++   + RG    A  +   M   G E +  VL SLI  +G+ 
Sbjct: 394 AMK-ADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGED 452

Query: 311 QRTDDVVRALNRLPELGITPD 331
           +R  +    L  + E G+ PD
Sbjct: 453 RRIAEAFSVLQFMKENGLRPD 473



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L+D  R     +    ++ +I L G    ++G   +  EMK  G+ PN+I
Sbjct: 311 KGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNII 370

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  GR+ R  +     + M  +GL P+   Y +L+ AY +    +  L+V + M
Sbjct: 371 TYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAM 430

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G++ S  + N+L+    +     EAF + + MK +   +PD  T+++++       +
Sbjct: 431 RADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKEN-GLRPDVITYTTLMKALIRVEQ 489

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +   ++ EM+ +G  P+
Sbjct: 490 FEKVPVIYEEMITSGCAPD 508



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 126/271 (46%), Gaps = 10/271 (3%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R++P+A  FS LI  +  A   D  L +    +AIG+ P       L+ ++G A+R  + 
Sbjct: 83  RLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEA 142

Query: 176 KTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
           + ++ E    G + P    Y +LL+ Y +    ++   V  EM + G+      Y+ L+ 
Sbjct: 143 EALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVD 202

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                G  + A  + ++M+ ++  +P S+ FS ++     RG+  +A A+  EM  +G  
Sbjct: 203 AYTRAGRWESARILLKEME-ADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 261

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KL 353
           P+      +I  +GK       + A +R+ E GI PD      L++   +  + +   +L
Sbjct: 262 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 321

Query: 354 VECVEKSNSKLG-----YVVKLLLEEQDIEG 379
            + + +SN  LG      ++ LL EEQ  EG
Sbjct: 322 FDEMRESNCPLGTTTYNIMINLLGEEQRWEG 352



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 107 GLYDRARN--EKWRIDPNAFST-----LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL D A N  +  R D    ST     LI  +G         +V + MK  G++P++ITY
Sbjct: 418 GLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITY 477

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
             L+  + R ++  +V  IY+EM  +G +P+    A L
Sbjct: 478 TTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAML 515



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 110/267 (41%), Gaps = 45/267 (16%)

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +V ++Y    ++ L P+   ++ L+ A+ RAR  +  L                    LL
Sbjct: 71  EVPSMYCGGGESRLEPDAPLFSDLISAFARARLPDAALE-------------------LL 111

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG- 292
           A    +G T                 P S   +++I+      +V+EAEA+F E   AG 
Sbjct: 112 ASAQAIGLT-----------------PRSNAVTALISSLGSARRVAEAEALFLEFFLAGE 154

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
            +P      +L++ Y K     +  + L+ + + G+ PD+     L++  T+  + E  +
Sbjct: 155 IKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESAR 214

Query: 353 -LVECVEKSNSK-LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK--KAYCNCLIDLC 408
            L++ +E    K   YV   +L      G+++K    L    +  V+  + + N +ID  
Sbjct: 215 ILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTF 274

Query: 409 VNLNLLENAC----KLLELGLTLEVYT 431
              N L +A     ++ E G+  +V T
Sbjct: 275 GKYNCLGHAMDAFDRMREEGIEPDVVT 301


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 117/234 (50%), Gaps = 13/234 (5%)

Query: 110 DRARNEKWR-----------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +R   E WR           I P+  S ++K+ G     +  L+++ ++K    +P   T
Sbjct: 138 NRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGT 197

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREM 217
           YN+++  + +     +V  +Y EM   G   P+  TY++L+ A+G+    +  + ++ EM
Sbjct: 198 YNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEM 257

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G+Q +  +Y TL+ +   +G  +EA  +  +M+    C P  +T++ +I      G+
Sbjct: 258 KENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMR-MRRCVPTVYTYTELIRGLGKSGR 316

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V +A  ++  ML+ G +P++ ++ +LI   G++ R  + V     +  L  TP+
Sbjct: 317 VEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPN 370



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 135/310 (43%), Gaps = 12/310 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI  +G     D  + +++EMK  G++P    Y  L+    +  +  +   + 
Sbjct: 230 DTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLV 289

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM      P   TY  L+R  G++   ED   VY+ M + G +  V L N L+ +    
Sbjct: 290 HEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRS 349

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               EA E+FE+M+   NC P+  T++++I ++   +   SEA +    M + G  P+ F
Sbjct: 350 DRLKEAVELFEEMRLL-NCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSF 408

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK--LVEC 356
             + LI  + K  R +  +  L  + E G  P       L+N + +  + E       E 
Sbjct: 409 TYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQEL 468

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-----DVKKAYCNCLIDLCVNL 411
            E   S    V  ++++     G F  EA  LFN + K     DV  AY N LI   V  
Sbjct: 469 KENCGSSSVRVYAVMIKHFGKCGRF-NEAMGLFNEMKKLGCIPDV-YAY-NALITGMVRA 525

Query: 412 NLLENACKLL 421
           ++++ A  L 
Sbjct: 526 DMMDEAFSLF 535



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 121/292 (41%), Gaps = 41/292 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G VE A  L    R  +       ++ LI+  G +G  +    VY+ M   G KP+++
Sbjct: 278 KLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVV 337

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKE------------------------------------ 181
             NNL++ +GR+ R  +   +++E                                    
Sbjct: 338 LMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLER 397

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +G+ P+  TY+ L+  + +    E  L +  EM EKG       Y +L+        
Sbjct: 398 MKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKR 457

Query: 242 TDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            + A E+F+++K  ENC   S   ++ MI      G+ +EA  +FNEM + G  P+++  
Sbjct: 458 YEAANELFQELK--ENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAY 515

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEEL 350
            +LI    +A   D+       + E G  PD      +LN + +T  PK  +
Sbjct: 516 NALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAM 567



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 1/213 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   VE A  L +    + +   P A+ +LI   G A  ++    +++E+K      ++ 
Sbjct: 419 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVR 478

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++   G+  R  +   ++ EM   G  P+   Y +L+    RA   ++  S++R M
Sbjct: 479 VYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTM 538

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G    +  +N +L   A  G    A E+F  MKSS   +PD+ ++++++   S  G 
Sbjct: 539 EENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSS-TIKPDAVSYNTVLGCLSRAGL 597

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
             EA  +  EM   GFE +L   +S+++  GK 
Sbjct: 598 FEEATKLMKEMNSKGFEYDLITYSSILEAVGKV 630



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 2/222 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+D  +    +     ++TL+ +Y   G  +  LN+  EM+     P + TY  L+ 
Sbjct: 250 AVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIR 309

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G++ R      +YK M  +G  P+     +L+   GR+   ++ + ++ EM+      
Sbjct: 310 GLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTP 369

Query: 225 SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           +V  YNT++ ++  D     EA    E MK  +   P S+T+S +I       +V +A  
Sbjct: 370 NVVTYNTIIKSLFEDKAPPSEASSWLERMK-KDGVVPSSFTYSILIDGFCKTNRVEKALL 428

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           +  EM E GF P      SLI   GKA+R +        L E
Sbjct: 429 LLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKE 470



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 103/221 (46%), Gaps = 3/221 (1%)

Query: 113 RNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           R +K  + P++F  S LI  +      +  L + EEM   G  P    Y +L++++G+AK
Sbjct: 397 RMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAK 456

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
           R      +++E+ +N  S +   YA +++ +G+     + + ++ EMK+ G    V  YN
Sbjct: 457 RYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYN 516

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
            L+         DEAF +F  M+ +  C PD  + + ++   +  G    A  MF +M  
Sbjct: 517 ALITGMVRADMMDEAFSLFRTMEEN-GCNPDINSHNIILNGLARTGGPKRAMEMFAKMKS 575

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  +P+     +++ C  +A   ++  + +  +   G   D
Sbjct: 576 STIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYD 616



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 4/162 (2%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            ++ +IK +G  G F+  + ++ EMK +G  P++  YN L+  M RA    +  ++++ M
Sbjct: 479 VYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTM 538

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            +NG +P+ N++  +L    R    +  + ++ +MK   ++     YNT+L   +  G  
Sbjct: 539 EENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLF 598

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +EA ++ ++M +S+  + D  T+SS   I    GKV E   M
Sbjct: 599 EEATKLMKEM-NSKGFEYDLITYSS---ILEAVGKVDEDRNM 636



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 78/151 (51%), Gaps = 9/151 (5%)

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
           + +++  GR +     LS++ ++K +  + +   YN+++ M    G+ ++  E++ +M S
Sbjct: 164 SEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCS 223

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             +C PD+ T+S++I+      +   A  +F+EM E G +P   + T+L+  Y K  + +
Sbjct: 224 EGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVE 283

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +   ALN + E+      R   C+  V T T
Sbjct: 284 E---ALNLVHEM------RMRRCVPTVYTYT 305


>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
 gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++T++++YG A  F   ++++  M+   ++ N++TYN ++   G+     
Sbjct: 358 KMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHE 417

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+A   +   +++++++  G+++   LY T++
Sbjct: 418 KATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI 477

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                VG    A  +  ++K      PD+    + ITI +  G+  EA  +F +  E+G 
Sbjct: 478 VAYERVGLMGHAKRLLHELK-----LPDNIPRETAITILAKAGRTEEATWVFRQAFESGE 532

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  Y + QR  +V+    ++   G  PD      +LN
Sbjct: 533 VKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLN 579



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 111/214 (51%), Gaps = 1/214 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA   ++A GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++
Sbjct: 167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLV 226

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+NL++   R     +  +I+  +  +G++P+   Y S++  YG+A+   +   + +EM
Sbjct: 227 LYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEM 286

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+  +   Y+TLL++  +     EA  +F +MK   NC  D  T + MI +      
Sbjct: 287 NEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV-NCALDLTTCNIMIDVYGQLDM 345

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           V EA+ +F  + +   EPN+    ++++ YG+A+
Sbjct: 346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAE 379



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 4/202 (1%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           V+EE K     P++  YN +L  + RAK+      ++ EM    L+P+  TY++L+ ++G
Sbjct: 145 VHEEAK---YTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFG 201

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +    +  LS  ++M++  +   + LY+ L+ +   +    +A  IF  +K S    PD 
Sbjct: 202 KEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRS-GITPDL 260

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             ++SMI +        EA  +  EM EAG  PN    ++L+  Y +  +  + +     
Sbjct: 261 VAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAE 320

Query: 323 LPELGITPDDRFCGCLLNVMTQ 344
           + E+    D   C  +++V  Q
Sbjct: 321 MKEVNCALDLTTCNIMIDVYGQ 342



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 119/278 (42%), Gaps = 31/278 (11%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +GKT    K+   V     R  +    +Y T      +AG ++ A  L+ + R+    ID
Sbjct: 410 YGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEID 469

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              + T+I  Y   G       +  E+K     P+ I     +  + +A R  +   +++
Sbjct: 470 QVLYQTMIVAYERVGLMGHAKRLLHELKL----PDNIPRETAITILAKAGRTEEATWVFR 525

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           +  ++G   + + +  ++  Y R +   + + V+ +M+  G        + ++AM  +  
Sbjct: 526 QAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPD----SNVIAMVLNAY 581

Query: 241 YTDEAFE----IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                FE    ++ +M+      PD   F  M+++ S +      E++F + LE+  +PN
Sbjct: 582 GKQREFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLF-QRLES--DPN 637

Query: 297 L------FVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +       V+ +L   Y +A + +D  R +NR+ E GI
Sbjct: 638 VNSKELHLVVAAL---YERADKLNDASRVMNRMRERGI 672


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 139/285 (48%), Gaps = 24/285 (8%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F++LI+ YG AG F   + V++ MK IGV P+++T+N+LL  + +  R    K ++ EM 
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 184 DN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           D  G++P+  T+  L+R +      ++    ++EM        V  YNTL+      G  
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 243 DEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             A  + + M K S N  P+  T++++I     +  ++EA ++  EM+  G +PN     
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYN 347

Query: 302 SLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC---- 356
           +LIQ   +AQ+ D +   L   + + G  PD     C LN + +     +GKL E     
Sbjct: 348 TLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT----CTLNTLIKA-HCTMGKLEEAFSVF 402

Query: 357 -------VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
                  V+  ++    +V+ L +     GDF++ A E F+ +++
Sbjct: 403 EKMSELRVQPDSATYSVLVRSLCQ----RGDFRR-AEEFFDELAE 442



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 7/221 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   MA  L+D   +  + + P+   F+ LI+ +      D     ++EM      P+
Sbjct: 212 KRGRTSMAKQLFDEMLD-TYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPD 270

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSV 213
           ++TYN L+D + RA +      + K M      LSPN  TY +L+R Y   +   + LS+
Sbjct: 271 VVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSL 330

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             EM  +G++ +   YNTL+    +    D+  EI E M       PD+ T +++I    
Sbjct: 331 LAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHC 390

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             GK+ EA ++F +M E   +P+    + L++     QR D
Sbjct: 391 TMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSL--CQRGD 429



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 9/204 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG V++A  +      +   + PN   ++TLI+ Y    +    L++  EM + G+KPN
Sbjct: 283 RAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPN 342

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
            ITYN L+  +  A++  ++K I + M  D G  P+  T  +L++A+      E+  SV+
Sbjct: 343 KITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVF 402

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------NCQPDSWTFSSM 268
            +M E  +Q     Y+ L+      G    A E F+++   E       C+P    ++ M
Sbjct: 403 EKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPM 462

Query: 269 ITICSCRGKVSEAEAMFNEMLEAG 292
                  GK  +AE +F ++++ G
Sbjct: 463 FEYLCSNGKTKKAERVFRQLMKRG 486



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 92/186 (49%), Gaps = 6/186 (3%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY---KEMTDNGLSPNWNTYASL 197
           L+ +  ++A G   N  +Y  +++ +GR++     +      ++ +   +      + SL
Sbjct: 112 LHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSL 171

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           +R+YG A   ++++ V++ MKE G+  SV  +N+LL++    G T  A ++F++M  +  
Sbjct: 172 IRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYG 231

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTD 314
             PD++TF+ +I        V E    F EM     +P++    +L+      GK +   
Sbjct: 232 VTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAH 291

Query: 315 DVVRAL 320
           +VV+ +
Sbjct: 292 NVVKGM 297



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 15/195 (7%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D    +TLIK + T G  +   +V+E+M  + V+P+  TY+ L+ ++ +     + +  +
Sbjct: 378 DTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFF 437

Query: 180 KEMT-------DNGLSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
            E+        D G  P    +N     L + G+ +  E    V+R++ ++G Q   +  
Sbjct: 438 DELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAE---RVFRQLMKRGTQDPPSYK 494

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
             +L  C + G  +  F++   M   +   PD+ T+  MI     +G    A     +ML
Sbjct: 495 TLILGHCRE-GTPEAGFDLLVLMLRRDFV-PDAETYGLMIDGLLKKGDPVLAHKSLEKML 552

Query: 290 EAGFEPNLFVLTSLI 304
           ++   P   +  S++
Sbjct: 553 KSSHLPTTAIFHSIL 567


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 119/235 (50%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  ++D    E    D  +++TL+  Y   G     L V+ EM   G+ P+++
Sbjct: 235 KAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVV 294

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+    +A    Q   +  +M + GL  N  T+ +L+  + +  + +D L    EM
Sbjct: 295 TFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEM 354

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G+Q SV  YN L+     +G  D A E+  +M+ ++  +PD  T+S++I+     G 
Sbjct: 355 RKCGIQPSVVCYNALINGYCKLGRMDLARELIREME-AKRVKPDVVTYSTIISGYCKVGN 413

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A  +  +ML+ G  P+    +SLI+   + +R +D       + +LG+ PD+
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDE 468



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+E A  L  + R    R++   F+ LI  +   G  D  L   EEM+  G++P+++
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 364

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L++   +  R    + + +EM    + P+  TY++++  Y +    +    + ++M
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 424

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG+      Y++L+    +    ++A E+FE+M      QPD +T++++I      G 
Sbjct: 425 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGN 483

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           V +A ++ +EM+  G  P++   + LI    K+ RT +  R L +L      PD+
Sbjct: 484 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDN 538



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 2/233 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMIT 158
           G +E A G+    R      +   ++TL+  +  AG  DG   V   M+  G  KPN++T
Sbjct: 166 GRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 225

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N++++ + +A R    + ++ EM   GL+P+  +Y +LL  Y +     ++L+V+ EM 
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 285

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           ++G+   V  + +L+      G  ++A  +   M+     + +  TF+++I     +G +
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR-ERGLRMNEVTFTALIDGFCKKGFL 344

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +A     EM + G +P++    +LI  Y K  R D     +  +    + PD
Sbjct: 345 DDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 3/182 (1%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGED 209
           G  P++  YN +L  +  A  P   +     M  +G++PN  TY  L+RA   R R  E+
Sbjct: 113 GYAPSVPAYNAVLLALSDASLP-SARRFLSSMLRHGVAPNVYTYNILVRALCARGRL-EE 170

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            + V  +M+  G   +   YNTL+A     G  D A  +   M+   N +P+  TF+SM+
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G++  A  +F+EM+  G  P++    +L+  Y K     + +   + + + G+ 
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 330 PD 331
           PD
Sbjct: 291 PD 292



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 112/249 (44%), Gaps = 16/249 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +++A  L      ++ + D   +ST+I  Y   GN D    + ++M   GV P+ I
Sbjct: 375 KLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAI 434

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+  +   KR      +++ M   G+ P+  TY +L+  + +    E  LS++ EM
Sbjct: 435 TYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 494

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS---- 273
             KG+   V  Y+ L+   +    T EA  +   +   E+  PD+  + +++  CS    
Sbjct: 495 IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL-YHEDPVPDNIKYDALMLCCSKAEF 553

Query: 274 -----------CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
                       +G + EA+ ++  ML+  ++ +  V + LI  + +       +    +
Sbjct: 554 KSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQ 613

Query: 323 LPELGITPD 331
           +   G +P+
Sbjct: 614 MLRSGFSPN 622


>gi|255661218|gb|ACU25778.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 426

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN ++   G+     
Sbjct: 177 KMEIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + +EAG 
Sbjct: 297 ITYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIEAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +++   +++  +G  PD R    +LN
Sbjct: 352 VKDITVFEHMIDLFSKYKKYSNIIEVFDKMRGIGYFPDSRVIALVLN 398



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G+ P+++ YN++++  G+AK   + +++ 
Sbjct: 43  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLI 102

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 103 GEMRTAGVMPNTISYSTLLTMYVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQL 162

Query: 220 -------------KGMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                        + M++  +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 163 GMAKEADKLFWGXRKMEIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 221

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           +++M+ I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 222 YNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 325 ELGITPD 331
             GI  D
Sbjct: 282 SSGIEID 288



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G++P+   Y S++  +G+A+  ++  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F    +   EPN+  
Sbjct: 128 KKFIEALSVFAEMREIQ-CSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 1/159 (0%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
            LSP+  TY++L+  +G+    +D LS  ++M+E  +   + LY+ L+ +   +    +A
Sbjct: 4   ALSPDRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             IF  +K S    PD   ++SMI +        EA ++  EM  AG  PN    ++L+ 
Sbjct: 64  ISIFSRLKRS-GITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLT 122

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            Y + ++  + +     + E+  + D   C  +++V  Q
Sbjct: 123 MYVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQ 161



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 10/160 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +          ++ +  Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
               T I +   AG  +    V+ +    G   ++  + +++D   + K+   +  ++ +
Sbjct: 321 IPRDTAIHILAGAGRIEEATWVFRQAIEAGEVKDITVFEHMIDLFSKYKKYSNIIEVFDK 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           M   G  P+    A +L AYG+ +  +    VY EM+++G
Sbjct: 381 MRGIGYFPDSRVIALVLNAYGKLQEFDKANEVYMEMQDEG 420


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 111/215 (51%), Gaps = 3/215 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ LI      G  D  + +  +M+   V P  +TYN+L+  + +A+R  +  
Sbjct: 77  LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAY 135

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM  +G  P+  TY +L+  + +++  +D L V+ ++  +G +  V  Y+ L+   
Sbjct: 136 DLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGL 195

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   EA ++F  M  S +C P++ T++S+I+     GK+ EA  +   M E G  P+
Sbjct: 196 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 255

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   T+L+  + K  R DD    LN++   G+TPD
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPD 290



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 2/186 (1%)

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + +TY +L+  + + KR  Q      +M   G  P+  TY +++ A        +     
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM  + +  +V  Y  L+      G  DEA  +   M+  + C P + T++S+I+    
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR--KKCVPTAVTYNSLISGLCK 127

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             + SEA  +  EM+ +G  P++F  T+LI  + K++++DD +R   +L   G  PD   
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 335 CGCLLN 340
             CL++
Sbjct: 188 YSCLID 193



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +++LI  +   G  D  +N+ E M   G  P+++TY  L++   +  R      +
Sbjct: 219 PNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDL 278

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             +MT  GL+P+  T+ SL+    R     D + +  EM+ K    +V  YNT+L     
Sbjct: 279 LNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCR 338

Query: 239 VGYTDEAFE-IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
               +EA + + E+M    +C P+  +F+ MI       + SEA  +  E       P++
Sbjct: 339 ANQLEEARKFMLEEM----DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDV 394

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            + T++I    + ++ D+  R   ++ E    P     GCL N +T
Sbjct: 395 VMYTTVIDGLCREKKVDEACRVYRKMLE---EP-----GCLPNSIT 432



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 101/208 (48%), Gaps = 2/208 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +++LI+        +  L    +M + G  P++ TY  ++  +    R  + +   
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM +  L+PN  TY  L+    +    ++ +++  +M++K +  +VT YN+L++     
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVT-YNSLISGLCKA 128

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA+++ E+M  S  C PD +T++++IT      K  +A  +F +++  GF P++  
Sbjct: 129 ERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELG 327
            + LI    K  R  + +    R+ + G
Sbjct: 188 YSCLIDGLCKEGRLKEAIDLFGRMIKSG 215



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 4/208 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A  L +R        D   ++TL+  +      D   ++  +M   G+ P+++
Sbjct: 233 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVV 292

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+D + R  R      I  EM     SP   TY ++L  Y RA   E+       +
Sbjct: 293 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--L 350

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E     +V  +N ++     V  + EA E+ E+ +    C PD   ++++I       K
Sbjct: 351 EEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR-RRRCNPDVVMYTTVIDGLCREKK 409

Query: 278 VSEAEAMFNEML-EAGFEPNLFVLTSLI 304
           V EA  ++ +ML E G  PN    ++L+
Sbjct: 410 VDEACRVYRKMLEEPGCLPNSITYSTLV 437



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 103/230 (44%), Gaps = 8/230 (3%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLL 163
           A  ++++     +R D   +S LI      G     ++++  M K+    PN +TYN+L+
Sbjct: 169 ALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 228

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
               R  +  +   + + M + G SP+  TY +L+  + +    +D   +  +M  KG+ 
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 288

Query: 224 LSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEA 281
             V  + +L+  +C +   +D A  I  +M+  ++C P  +T+++++    CR  ++ EA
Sbjct: 289 PDVVTFTSLMDGLCRENRLSD-AVHILGEMR-RKSCSPTVYTYNTILDG-YCRANQLEEA 345

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                E  E    PN+     +I+   K  R+ + +  +         PD
Sbjct: 346 RKFMLE--EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E+    PN  +F+ +I+           + + EE +     P+++ Y  ++D + R K+ 
Sbjct: 351 EEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKV 410

Query: 173 WQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
            +   +Y++M +  G  PN  TY++L+     A      L   R   EKG   ++  YN 
Sbjct: 411 DEACRVYRKMLEEPGCLPNSITYSTLVTGLCNA----GMLDRARGYIEKGCVPNIGTYNL 466

Query: 232 LLAMCADVGYTDEAFEIFEDM 252
           L+         ++A E+ +DM
Sbjct: 467 LIDAFRKANRDEDARELLDDM 487


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 111/214 (51%), Gaps = 1/214 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA   ++A GL+D  R      D   +STLI  +G AG FD  L   ++M+   V  +++
Sbjct: 146 RAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFWLQQMEQDRVSGDLV 205

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+NL++   +     +  +I+  +  +G++P+   Y S++  +G+AR   +   +  EM
Sbjct: 206 LYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEM 265

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G+      Y+TLL++  +     EA  +F +M  + NC  D  T + MI +      
Sbjct: 266 REVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEA-NCSLDLMTCNIMIDVYGQLDM 324

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           V EA+ +F  M + G EPN+    +L++ YG+A+
Sbjct: 325 VKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAE 358



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+K+YG A  F   ++++  M+   ++ N++TYN ++   G++    
Sbjct: 337 KMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHE 396

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+A   +    ++++++  G+++   LY T++
Sbjct: 397 KATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 456

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  D+K    C PD     + I I +  G++ EA  +F +  +AG 
Sbjct: 457 VAYERAGLVAHAKRLLHDLK----C-PDIIPRDTAIKILARAGRIEEATWVFRQAFDAGE 511

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I+ + + +R  +VV    ++   G  PD      +LN
Sbjct: 512 VKDISVFRCMIELFSRNKRPANVVEVFEKMRGAGYFPDSDVIALVLN 558



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 107/213 (50%), Gaps = 1/213 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++STL+ +Y     F   L+V+ EM       +++T N ++D  G+     +   ++
Sbjct: 273 DTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLF 332

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   G+ PN  +Y +LL+ YG A    + + ++R M+ K ++ +V  YNT++ +    
Sbjct: 333 WSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKS 392

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              ++A  + ++M+     +P++ T+S++I+I    GK+  A  +F ++  +G E +  +
Sbjct: 393 LEHEKATNLVQEMQ-KRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVL 451

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             ++I  Y +A       R L+ L    I P D
Sbjct: 452 YQTMIVAYERAGLVAHAKRLLHDLKCPDIIPRD 484



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 110/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +      D  A++++I ++G A  F     +  EM+ +GV P+ ++Y+ LL 
Sbjct: 223 AISIFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLS 282

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                ++  +  +++ EM +   S +  T   ++  YG+    ++   ++  M++ G++ 
Sbjct: 283 VYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEP 342

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  YNTLL +  +     EA  +F  M+  E  + +  T+++MI I     +  +A  +
Sbjct: 343 NVVSYNTLLKVYGEAELFGEAIHLFRLMQRKE-IEQNVVTYNTMIKIYGKSLEHEKATNL 401

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EM + G EPN    +++I  +GKA + D       +L   G+  D
Sbjct: 402 VQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEID 448



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 94/191 (49%), Gaps = 1/191 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++  YN +L  + RAK+      ++ EM    LSP+  TY++L+ ++G+A   +++L  
Sbjct: 132 PSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFW 191

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            ++M++  +   + LY+ L+ +   +    +A  IF  +K S    PD   ++SMI +  
Sbjct: 192 LQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRS-GITPDLVAYNSMINVFG 250

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
                 EA  + +EM E G  P+    ++L+  Y + ++  + +     + E   + D  
Sbjct: 251 KARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLM 310

Query: 334 FCGCLLNVMTQ 344
            C  +++V  Q
Sbjct: 311 TCNIMIDVYGQ 321



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 117/274 (42%), Gaps = 23/274 (8%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +GK+    K+   V     R  +    +Y T      +AG ++ A  L+ + R+    ID
Sbjct: 389 YGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEID 448

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              + T+I  Y  AG       +  ++K     P++I  +  +  + RA R  +   +++
Sbjct: 449 QVLYQTMIVAYERAGLVAHAKRLLHDLKC----PDIIPRDTAIKILARAGRIEEATWVFR 504

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           +  D G   + + +  ++  + R +   + + V+ +M+  G      +   +L     + 
Sbjct: 505 QAFDAGEVKDISVFRCMIELFSRNKRPANVVEVFEKMRGAGYFPDSDVIALVLNAYGKLR 564

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--- 297
             ++A  ++ +M+  E   PD   F  M+++   R      E++F ++     +PN+   
Sbjct: 565 EFEKADAVYREMQEEECVFPDEVHF-QMLSLYGARKDFIMVESLFEKL---DSDPNINKK 620

Query: 298 ---FVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
               V+ S+   Y +  R +D  R +NR+ + G+
Sbjct: 621 ELHLVVASI---YERQNRLNDASRIMNRMSKEGM 651


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 8/254 (3%)

Query: 85  PRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NF 137
           P  S+L  ++Y T      RAG  E A  L+   R +        ++ ++ +YG  G ++
Sbjct: 82  PPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSW 141

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
              + + EEM+A GV+P+  T + ++   GR     Q    ++++   G  P   TY +L
Sbjct: 142 PRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL 201

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           L+ +G+A    + L V +EM++ G Q     YN L    A  G+ +EA +  + M +S+ 
Sbjct: 202 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTM-TSKG 260

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             P+++T+++++T  +  G+V EA A+F+ M + G+ PN+     +    GK  R   ++
Sbjct: 261 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML 320

Query: 318 RALNRLPELGITPD 331
             L  +   G TP+
Sbjct: 321 EMLEEMSRSGCTPN 334



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 3/212 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++P+ F  ST+I   G  G  D  +  +E++KA G  P ++TYN LL   G+A    +  
Sbjct: 156 VEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEAL 215

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + KEM D+G  P+  TY  L   Y RA + E+       M  KG+  +   YNT++   
Sbjct: 216 RVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAY 275

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           A+VG  DEA  +F+ MK +    P+  T++ +  +   + + +    M  EM  +G  PN
Sbjct: 276 ANVGRVDEALALFDRMKKN-GYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPN 334

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
                +++   GK    D V R LN +   G+
Sbjct: 335 RVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGV 366



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 1/221 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L++++G AGN+   L V +EM+  G +P+ +TYN L  T  RA    +       MT
Sbjct: 198 YNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMT 257

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL PN  TY +++ AY      ++ L+++  MK+ G   +V  YN +  M        
Sbjct: 258 SKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFT 317

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
              E+ E+M  S  C P+  T+++M+ +C  RG       + N M   G E +     +L
Sbjct: 318 AMLEMLEEMSRS-GCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTL 376

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           I  YG+        +  + +   G TP       LLNV+++
Sbjct: 377 ISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSR 417



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+  T++  Y   G  D  L +++ MK  G  PN+ TYN +   +G+  R   +  +
Sbjct: 263 PNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEM 322

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM+ +G +PN  T+ ++L   G+    +    V   MK  G++LS   YNTL++    
Sbjct: 323 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 382

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    AF+++++M SS    P   T+++++ + S +G  S A+++ ++ML+ GF+PN  
Sbjct: 383 CGSRTYAFKMYDEMISS-GFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQ 441

Query: 299 VLTSLIQCYGKA 310
             + L+QCY K 
Sbjct: 442 SYSLLLQCYAKG 453



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 11/263 (4%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 128
           ++G +P    W N       K   + Y TR  N   + G+          +  + ++TLI
Sbjct: 328 RSGCTPNRVTW-NTMLAVCGKRGMEDYVTRVLNGMKSCGV---------ELSRDTYNTLI 377

Query: 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
             YG  G+      +Y+EM + G  P + TYN LL+ + R       ++I  +M  NG  
Sbjct: 378 SAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFK 437

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           PN  +Y+ LL+ Y +        S+ +E+    +  S  +  TL+         +   + 
Sbjct: 438 PNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKA 497

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           F+++K+ +  +PD   F+SM+ + +  G  S+A  MF+ + ++G  P+L    SL+  Y 
Sbjct: 498 FQEVKA-QGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYA 556

Query: 309 KAQRTDDVVRALNRLPELGITPD 331
           K+  + +  + L +L    + PD
Sbjct: 557 KSNESWEAEKILKQLKSSQVKPD 579



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 1/243 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN   A  +     +   + D   ++ L   Y  AG F+      + M + G+ PN  
Sbjct: 207 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 266

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++       R  +   ++  M  NG  PN NTY  +    G+       L +  EM
Sbjct: 267 TYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM 326

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   +   +NT+LA+C   G  D    +   MKS    +    T++++I+     G 
Sbjct: 327 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSC-GVELSRDTYNTLISAYGRCGS 385

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            + A  M++EM+ +GF P L    +L+    +          ++++ + G  P+D+    
Sbjct: 386 RTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSL 445

Query: 338 LLN 340
           LL 
Sbjct: 446 LLQ 448



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   VE AF      + + ++ D   F++++ +Y   G +     +++ +K  G+ P++I
Sbjct: 490 RLEGVEKAF---QEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLI 546

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+D   ++   W+ + I K++  + + P+  +Y +++  + +    ++   +  EM
Sbjct: 547 TYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEM 606

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRG 276
              GM   V  Y+TL+   A +   +EA E+   M    N +P   T+  ++ + C  + 
Sbjct: 607 IADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYM-IHHNLKPMELTYRRVVDSYCKAK- 664

Query: 277 KVSEAEAMFNEM 288
           +  EA    +E+
Sbjct: 665 RYDEAREFLSEI 676



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/151 (18%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D  +      D   +++L+ +Y  +        + +++K+  VKP++++YN +++   
Sbjct: 532 MFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFC 591

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LSV 226
           +     + + I  EM  +G++P   TY +L+  Y       +   V   M    ++ + +
Sbjct: 592 KQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMEL 651

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           T    + + C    Y DEA E   ++  ++ 
Sbjct: 652 TYRRVVDSYCKAKRY-DEAREFLSEISDTDQ 681


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 119/236 (50%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG +E A  L D    E   + P A++  T I  +G +G     +  +E+MKA G+ PN
Sbjct: 414 RAGRIEDALKLLDTM--ESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPN 471

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++  N  L ++    R  + KT++  + +NGL+P+  TY  +++ Y +    ++ +++  
Sbjct: 472 IVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLS 531

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM   G +  V + N+L+      G  DEA+++F+ MK  +   P   T++++++     
Sbjct: 532 EMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMK-LSPTVVTYNTLLSGLGKE 590

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G+V +A  +F  M+     PN     +L+ C+ K    +  ++  +++  +   PD
Sbjct: 591 GRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPD 646



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 112/229 (48%), Gaps = 1/229 (0%)

Query: 103  EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
            E A+ L+   +N     D   F+ L+ ++G +G       +Y+EM +   KP+ ITYN +
Sbjct: 805  EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 163  LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
            + ++ ++    +    + ++  +   P   TY  L+    +    E+ + ++ EM + G 
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924

Query: 223  QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            + +  ++N L+     +G T+ A ++F+ M  +E  +PD  +++ ++      G+V EA 
Sbjct: 925  KPNCAIFNILINGYGKIGDTETACQLFKRM-VNEGIRPDLKSYTILVDCLCLAGRVDEAL 983

Query: 283  AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              FNE+   G +P+      +I   GK+QR ++ +   N +   GI PD
Sbjct: 984  YYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPD 1032



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 37/305 (12%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           K+   R G  +M   L ++ R   + ++  +++ LI L   +G     L VY  M + G+
Sbjct: 165 KALSIRGGLRQMTTVL-NKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGL 223

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           KP++ TY+ L+  +G+ +    V  + KEM D GL PN  T+   +R  GRA   ++   
Sbjct: 224 KPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYE 283

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS------------------ 254
           ++R M ++G    +  Y  L+    + G  + A E+F  MK+                  
Sbjct: 284 IFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN 343

Query: 255 ----------------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                           ++   PD  TF+ ++ +        EA A F+ M + G  PNL 
Sbjct: 344 DFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLH 403

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
              +LI    +A R +D ++ L+ +  +G+ P        ++   ++   E GK VE  E
Sbjct: 404 TYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSG--ETGKAVETFE 461

Query: 359 KSNSK 363
           K  +K
Sbjct: 462 KMKAK 466



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG +E A  L+ + +    + D   + TL+  +   G+ D     + +M+A G  P+++T
Sbjct: 310 AGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVT 369

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +  L+D + +A+   +    +  M   G+ PN +TY +L+    RA   ED L +   M+
Sbjct: 370 FTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTME 429

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G+Q +   Y T +      G T +A E FE MK ++   P+    ++ +   +  G++
Sbjct: 430 SVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMK-AKGIVPNIVACNASLYSLAEMGRL 488

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EA+ MFN + E G  P+      +++CY K  + D+ V  L+ +   G  PD
Sbjct: 489 REAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPD 541



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 107/234 (45%), Gaps = 1/234 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            ++G +   F LY    + + + D   ++ +I     + N D  L+ + ++ +   +P   
Sbjct: 835  KSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPR 894

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            TY  L+D + +  R  +   +++EM+D G  PN   +  L+  YG+    E    +++ M
Sbjct: 895  TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRM 954

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              +G++  +  Y  L+      G  DEA   F ++KS+    PD   ++ +I       +
Sbjct: 955  VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKST-GLDPDFIAYNRIINGLGKSQR 1013

Query: 278  VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + EA A++NEM   G  P+L+   SL+   G A   +   R    L   G+ PD
Sbjct: 1014 MEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPD 1067



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 111/247 (44%), Gaps = 7/247 (2%)

Query: 67   HGKTGSSPKSYIWVNPKSPRASKLKEKSYD------TRAGNVEMAFGLYDRARNEKWRID 120
            HGK+G   + +        R  K    +Y+       ++ N++ A   +    +  +R  
Sbjct: 833  HGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPT 892

Query: 121  PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
            P  +  LI      G  +  + ++EEM   G KPN   +N L++  G+         ++K
Sbjct: 893  PRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFK 952

Query: 181  EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
             M + G+ P+  +Y  L+     A   ++ L  + E+K  G+      YN ++       
Sbjct: 953  RMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQ 1012

Query: 241  YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +EA  ++ +M++     PD +T++S++      G V +A+ M+ E+  AG EP++F  
Sbjct: 1013 RMEEALALYNEMRN-RGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTY 1071

Query: 301  TSLIQCY 307
             +LI+ Y
Sbjct: 1072 NALIRGY 1078



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 113/243 (46%), Gaps = 1/243 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           VE    +++  + +  R D + + T+ K     G       V  +M+  G   N  +YN 
Sbjct: 138 VEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNG 197

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+  + ++    +   +Y+ M   GL P+  TY++L+ A G+ R  E  + + +EM++ G
Sbjct: 198 LIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLG 257

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +V  +   + +    G  DEA+EIF  M   E C PD  T++ +I      G++  A
Sbjct: 258 LRPNVYTFTICIRVLGRAGKIDEAYEIFRRM-DDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           + +F +M   G +P+  +  +L+  +      D      +++   G  PD      L++V
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDV 376

Query: 342 MTQ 344
           + +
Sbjct: 377 LCK 379



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G+ E A  L+ R  NE  R D  +++ L+     AG  D  L  + E+K+ G+ P+ I
Sbjct: 940  KIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFI 999

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             YN +++ +G+++R  +   +Y EM + G+ P+  TY SL+   G A   E    +Y E+
Sbjct: 1000 AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYT-----DEAFEIFEDMKSSENCQPDSWTFSSM 268
            +  G++  V  YN L+      GY+     + A+ ++++M   + C P+  T++ +
Sbjct: 1060 QLAGLEPDVFTYNALIR-----GYSLSENPEHAYTVYKNM-MVDGCNPNIGTYAQL 1109



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 103/200 (51%), Gaps = 1/200 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G +E A  L++   +   + +   F+ LI  YG  G+ +    +++ M   G++P++ 
Sbjct: 905  KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLK 964

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +Y  L+D +  A R  +    + E+   GL P++  Y  ++   G+++  E+ L++Y EM
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + +G+   +  YN+L+      G  ++A  ++E+++ +   +PD +T++++I   S    
Sbjct: 1025 RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLA-GLEPDVFTYNALIRGYSLSEN 1083

Query: 278  VSEAEAMFNEMLEAGFEPNL 297
               A  ++  M+  G  PN+
Sbjct: 1084 PEHAYTVYKNMMVDGCNPNI 1103



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 1/184 (0%)

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
           K +G+ P + +YN L+  +       +   ++K+M + G +P+  T+  LL  +G++   
Sbjct: 780 KKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKI 839

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
            +   +Y+EM  +  +     YN +++  A     D+A + F D+ SS+  +P   T+  
Sbjct: 840 TELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSD-FRPTPRTYGP 898

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I   +  G++ EA  +F EM + G +PN  +   LI  YGK   T+   +   R+   G
Sbjct: 899 LIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEG 958

Query: 328 ITPD 331
           I PD
Sbjct: 959 IRPD 962



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 127/310 (40%), Gaps = 13/310 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G V+ A  L           D    ++LI     AG  D    +++ MK + + P +
Sbjct: 518 SKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTV 577

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL  +G+  R  +   +++ M     SPN  ++ +LL  + +    E  L ++ +
Sbjct: 578 VTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSK 637

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M     +  V  YNT++         + AF  F  +K S    PD  T  +++      G
Sbjct: 638 MTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS--MHPDHVTICTLLPGLVKCG 695

Query: 277 KVSEAEAMFNE-MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           ++ +A ++  + M +  F  N      L+         D  +     L   GI  +D F 
Sbjct: 696 QIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFL 755

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL----LLEEQDIEGDFKKEATELFNS 391
             L+ V+ +  +E      +  +K   KLG    L     L  + +E  + ++A +LF  
Sbjct: 756 IPLVRVLCKHKRELYA--YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLF-- 811

Query: 392 ISKDVKKAYC 401
             KD+K   C
Sbjct: 812 --KDMKNVGC 819



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCAD 238
           +E+  NG+    +    L+R   + +       ++ +  +K G+  ++  YN L+    +
Sbjct: 741 EELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLE 800

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           V YT++A+++F+DMK+   C PD++TF+ ++ +    GK++E   ++ EM+    +P+  
Sbjct: 801 VHYTEKAWDLFKDMKNV-GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAI 859

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
               +I    K+   D  +     L      P  R  G L++ + +  + EE  +L E
Sbjct: 860 TYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFE 917



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 55/296 (18%), Positives = 110/296 (37%), Gaps = 40/296 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG V+ A+ ++DR ++ K       ++TL+   G  G     + ++E M      PN I
Sbjct: 554 KAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTI 613

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---------------- 201
           ++N LLD   +         ++ +MT     P+  TY +++                   
Sbjct: 614 SFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL 673

Query: 202 ----------------GRARYGE--DTLSVYRE-MKEKGMQLSVTLYNTLLAMCADVGYT 242
                           G  + G+  D +S+ R+ M +   +++ + +  L+         
Sbjct: 674 KKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEM 733

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D+A    E++  +  C+ DS+    +  +C  + ++   +       + G  P L     
Sbjct: 734 DKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNC 793

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           LI    +   T+        +  +G  PD      LL V  ++     GK+ E  E
Sbjct: 794 LIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKS-----GKITELFE 844


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 119/235 (50%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  ++D    E    D  +++TL+  Y   G     L V+ EM   G+ P+++
Sbjct: 235 KAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVV 294

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+    +A    Q   +  +M + GL  N  T+ +L+  + +  + +D L    EM
Sbjct: 295 TFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEM 354

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G+Q SV  YN L+     +G  D A E+  +M+ ++  +PD  T+S++I+     G 
Sbjct: 355 RKCGIQPSVVCYNALINGYCKLGRMDLARELIREME-AKRVKPDVVTYSTIISGYCKVGN 413

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A  +  +ML+ G  P+    +SLI+   + +R +D       + +LG+ PD+
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDE 468



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 135/279 (48%), Gaps = 10/279 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+E A  L  + R    R++   F+ LI  +   G  D  L   EEM+  G++P+++
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 364

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L++   +  R    + + +EM    + P+  TY++++  Y +    +    + ++M
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 424

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG+      Y++L+    +    ++A E+FE+M      QPD +T++++I      G 
Sbjct: 425 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGN 483

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A ++ +EM+  G  P++   + LI    K+ RT +  R L +L      PD+     
Sbjct: 484 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 543

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 376
           L   M    K E   +V  ++      G+ +K L++E D
Sbjct: 544 L---MLCCSKAEFKSVVALLK------GFCMKGLMKEAD 573



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 2/233 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMIT 158
           G +E A G+    R      +   ++TL+  +  AG  DG   V   M+  G  KPN++T
Sbjct: 166 GRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 225

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N++++ + +A R    + ++ EM   GL+P+  +Y +LL  Y +     ++L+V+ EM 
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 285

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           ++G+   V  + +L+      G  ++A  +   M+     + +  TF+++I     +G +
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR-ERGLRMNEVTFTALIDGFCKKGFL 344

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +A     EM + G +P++    +LI  Y K  R D     +  +    + PD
Sbjct: 345 DDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 3/182 (1%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGED 209
           G  P++  YN +L  +  A  P   +     M  +G++PN  TY  L+RA   R R  E+
Sbjct: 113 GYAPSVPAYNAVLLALSDASLP-SARRFLSSMLRHGVAPNVYTYNILVRALCARGRL-EE 170

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            + V  +M+  G   +   YNTL+A     G  D A  +   M+   N +P+  TF+SM+
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G++  A  +F+EM+  G  P++    +L+  Y K     + +   + + + G+ 
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 330 PD 331
           PD
Sbjct: 291 PD 292



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 112/249 (44%), Gaps = 16/249 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +++A  L      ++ + D   +ST+I  Y   GN D    + ++M   GV P+ I
Sbjct: 375 KLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAI 434

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+  +   KR      +++ M   G+ P+  TY +L+  + +    E  LS++ EM
Sbjct: 435 TYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 494

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS---- 273
             KG+   V  Y+ L+   +    T EA  +   +   E+  PD+  + +++  CS    
Sbjct: 495 IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL-YHEDPVPDNIKYDALMLCCSKAEF 553

Query: 274 -----------CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
                       +G + EA+ ++  ML+  ++ +  V + LI  + +       +    +
Sbjct: 554 KSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQ 613

Query: 323 LPELGITPD 331
           +   G +P+
Sbjct: 614 MLRSGFSPN 622


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 1/228 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L +    +   +D   ++ LI  +   GN    L ++E M   GV+  ++TY +L+ 
Sbjct: 311 AYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIY 370

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +  +  +   ++ E    G+ P+   Y +L+ ++  +   +    +  EM++K +  
Sbjct: 371 ALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAP 430

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               YNTL+     +G  DEA ++ ++M +    QPD  T++++I+  S +G V +A  +
Sbjct: 431 DDVTYNTLMRGLCLLGRVDEARKLIDEM-TKRGIQPDLVTYNTLISGYSMKGDVKDALRI 489

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            NEM+  GF P L    +LIQ   K  + DD    +  + E GITPDD
Sbjct: 490 RNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDD 537



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 1/173 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G V+    L+D A     R D   ++ LI  + T+GN D    +  EM+   + P+ 
Sbjct: 373 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 432

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+  +    R  + + +  EMT  G+ P+  TY +L+  Y      +D L +  E
Sbjct: 433 VTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 492

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           M  KG   ++  YN L+      G  D+A  + ++M  +    PD  T+ S+I
Sbjct: 493 MMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN-GITPDDSTYISLI 544



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 13/228 (5%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKT 177
           PNA  ++T+I  + + G     L++  EM+  G + PN  TY  ++    +  R  +   
Sbjct: 183 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 242

Query: 178 IYKEMTDNG-LSPNWNTYASLLRAY---GRARYGEDTLSVYRE-MKEKGMQLSVTLYNTL 232
           ++ EM   G + P    Y +L+  Y   G+     DT  +YR+ M E+G+ ++V  YN L
Sbjct: 243 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKL----DTALLYRDRMVERGVAMTVATYNLL 298

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G   EA+E+ E+M   +    D +T++ +I      G V +A  +F  M   G
Sbjct: 299 VHALFMDGRGTEAYELVEEM-GGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRG 357

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
               +   TSLI    K  +  +  +  +     GI PD      L+N
Sbjct: 358 VRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 405



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 113/257 (43%), Gaps = 12/257 (4%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L +Y  MK++ +  +  + + LL  +  A        ++ +M    L     T+  +LR 
Sbjct: 108 LRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRH 163

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
              A      L + R+M       +VT YNT++A     G    A +I  +M+      P
Sbjct: 164 LCSAGKPARALELLRQMPRPN---AVT-YNTVIAGFCSRGRVQAALDIMREMRERGGIAP 219

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           + +T+ ++I+     G+V EA  +F+EML  G  +P   +  +LI  Y    + D  +  
Sbjct: 220 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 279

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-YVVKLLLEEQDI 377
            +R+ E G+         L++ +    +  E  +LVE +      L  +   +L+     
Sbjct: 280 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCK 339

Query: 378 EGDFKKEATELFNSISK 394
           EG+ KK A E+F ++S+
Sbjct: 340 EGNVKK-ALEIFENMSR 355


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 111/215 (51%), Gaps = 3/215 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ LI      G  D  + +  +M+   V P  +TYN+L+  + +A+R  +  
Sbjct: 77  LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAY 135

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM  +G  P+  TY +L+  + +++  +D L V+ ++  +G +  V  Y+ L+   
Sbjct: 136 DLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGL 195

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   EA ++F  M  S +C P++ T++S+I+     GK+ EA  +   M E G  P+
Sbjct: 196 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPD 255

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   T+L+  + K  R DD    LN++   G+TPD
Sbjct: 256 VVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPD 290



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 2/186 (1%)

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + +TY +L+  + + KR  Q      +M   G  P+  TY +++ A        +     
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM  + +  +V  Y  L+      G  DEA  +   M+  + C P + T++S+I+    
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR--KKCVPTAVTYNSLISGLCK 127

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             + SEA  +  EM+ +G  P++F  T+LI  + K++++DD +R   +L   G  PD   
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 335 CGCLLN 340
             CL++
Sbjct: 188 YSCLID 193



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +++LI  +   G  D  +N+ E M   G  P+++TY  L++   +  R      +
Sbjct: 219 PNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDL 278

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             +MT  GL+P+  T+ SL+    R     D + +  EM+ K    +V  YNT+L     
Sbjct: 279 LNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCR 338

Query: 239 VGYTDEAFE-IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
               +EA + + E+M    +C P+  +F+ MI       + SEA  +  E       P++
Sbjct: 339 ANQLEEARKFMLEEM----DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDV 394

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            + T++I    + ++ D+  R   ++ E    P     GCL N +T
Sbjct: 395 VMYTTVIDGLCREKKVDEACRVYRKMLE---EP-----GCLPNSIT 432



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 101/208 (48%), Gaps = 2/208 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +++LI+        +  L    +M + G  P++ TY  ++  +    R  + +   
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM +  L+PN  TY  L+    +    ++ +++  +M++K +  +VT YN+L++     
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVT-YNSLISGLCKA 128

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA+++ E+M  S  C PD +T++++IT      K  +A  +F +++  GF P++  
Sbjct: 129 ERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELG 327
            + LI    K  R  + +    R+ + G
Sbjct: 188 YSCLIDGLCKEGRLKEAIDLFGRMIKSG 215



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 4/208 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A  L +R        D   ++TL+  +      D   ++  +M   G+ P+++
Sbjct: 233 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVV 292

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+D + R  R      I  EM     SP   TY ++L  Y RA   E+       +
Sbjct: 293 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--L 350

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E     +V  +N ++     V  + EA E+ E+ +    C PD   ++++I       K
Sbjct: 351 EEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR-RRRCNPDVVMYTTVIDGLCREKK 409

Query: 278 VSEAEAMFNEML-EAGFEPNLFVLTSLI 304
           V EA  ++ +ML E G  PN    ++LI
Sbjct: 410 VDEACRVYRKMLEEPGCLPNSITYSTLI 437



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 103/230 (44%), Gaps = 8/230 (3%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLL 163
           A  ++++     +R D   +S LI      G     ++++  M K+    PN +TYN+L+
Sbjct: 169 ALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 228

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
               R  +  +   + + M + G SP+  TY +L+  + +    +D   +  +M  KG+ 
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 288

Query: 224 LSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEA 281
             V  + +L+  +C +   +D A  I  +M+  ++C P  +T+++++    CR  ++ EA
Sbjct: 289 PDVVTFTSLMDGLCRENRLSD-AVHILGEMR-RKSCSPTVYTYNTILDG-YCRANQLEEA 345

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                E  E    PN+     +I+   K  R+ + +  +         PD
Sbjct: 346 RKFMLE--EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E+    PN  +F+ +I+           + + EE +     P+++ Y  ++D + R K+ 
Sbjct: 351 EEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKV 410

Query: 173 WQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
            +   +Y++M +  G  PN  TY++L+     A      L   R   EKG   ++  YN 
Sbjct: 411 DEACRVYRKMLEEPGCLPNSITYSTLITGLCNA----GMLDRARGYIEKGCVPNIGTYNL 466

Query: 232 LLAMCADVGYTDEAFEIFEDM 252
           L+         ++A E+ +DM
Sbjct: 467 LIDAFRKANRDEDARELLDDM 487


>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
           [Xeroaloysia ovatifolia]
          Length = 431

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   +  N++TYN+++   G+     
Sbjct: 180 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHE 239

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+A   +    ++++++  G+++   LY T++
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 299

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++KS +N   D     + I I +  G++ EA  +F + ++AG 
Sbjct: 300 VAYEKAGLVAHAKRLLHELKSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGE 354

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 VRDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 401



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 26  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 85

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y +LL  Y   +   + LSV+ EM+E
Sbjct: 86  NAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMRE 145

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 146 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 205

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N   +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 206 AIHLFRLMQ-RKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 264

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GKA + D       +L   G+  D
Sbjct: 265 SIWGKAGKLDRAAMLFQKLRSSGVEID 291



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   + 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
            TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M 
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 179

Query: 290 EAGFEPNLFVLTSLIQCYGKAQ 311
           + G EPN+    +L++ YG A+
Sbjct: 180 KMGIEPNVVSYNTLLRVYGDAE 201



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   + 
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    
Sbjct: 62  DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           T+L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 164



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 84/179 (46%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++G AG  D    +++++++ GV+ + + Y  ++    +A      K
Sbjct: 253 IEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAK 312

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 313 RLLHELKSPDNIPR-DTAIHILAGAGRI---EEATYVFRQAIDAGEVRDITVFERMIHLF 368

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+F+ M+      PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 369 SKYKKYANVVEVFDKMRGL-GYFPDS---NVIALVLNAYGKLHEFDKANGVYMEMQEVG 423


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 139/285 (48%), Gaps = 24/285 (8%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F++LI+ YG AG F   + V++ MK IGV P+++T+N+LL  + +  R    K ++ EM 
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 184 DN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           D  G++P+  T+  L+R +      ++    ++EM        V  YNTL+      G  
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 243 DEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             A  + + M K S N  P+  T++++I     +  ++EA ++  EM+  G +PN     
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYN 347

Query: 302 SLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC---- 356
           +LIQ   +AQ+ D +   L   + + G  PD     C LN + +     +GKL E     
Sbjct: 348 TLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT----CTLNTLIKA-HCTMGKLEEAFSVF 402

Query: 357 -------VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
                  V+  ++    +V+ L +     GDF++ A E F+ +++
Sbjct: 403 EKMSELRVQPDSATYSVLVRSLCQ----RGDFRR-AEEFFDELAE 442



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 7/221 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   MA  L+D   +  + + P+   F+ LI+ +      D     ++EM      P+
Sbjct: 212 KRGRTSMAKQLFDEMLD-TYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPD 270

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSV 213
           ++TYN L+D + RA +      + K M      LSPN  TY +L+R Y   +   + LS+
Sbjct: 271 VVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSL 330

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             EM  +G++ +   YNTL+    +    D+  EI E M       PD+ T +++I    
Sbjct: 331 LAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHC 390

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             GK+ EA ++F +M E   +P+    + L++     QR D
Sbjct: 391 TMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSL--CQRGD 429



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 9/204 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG V++A  +      +   + PN   ++TLI+ Y    +    L++  EM + G+KPN
Sbjct: 283 RAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPN 342

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
            ITYN L+  +  A++  ++K I + M  D G  P+  T  +L++A+      E+  SV+
Sbjct: 343 KITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVF 402

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------NCQPDSWTFSSM 268
            +M E  +Q     Y+ L+      G    A E F+++   E       C+P    ++ M
Sbjct: 403 EKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPM 462

Query: 269 ITICSCRGKVSEAEAMFNEMLEAG 292
                  GK  +AE +F ++++ G
Sbjct: 463 FEYLCSNGKTKKAERVFRQLMKRG 486



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 92/186 (49%), Gaps = 6/186 (3%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY---KEMTDNGLSPNWNTYASL 197
           L+ +  ++A G   N  +Y  +++ +GR++     +      ++ +   +      + SL
Sbjct: 112 LHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSL 171

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           +R+YG A   ++++ V++ MKE G+  SV  +N+LL++    G T  A ++F++M  +  
Sbjct: 172 IRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYG 231

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTD 314
             PD++TF+ +I        V E    F EM     +P++    +L+      GK +   
Sbjct: 232 VTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAH 291

Query: 315 DVVRAL 320
           +VV+ +
Sbjct: 292 NVVKGM 297



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 15/195 (7%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D    +TLIK + T G  +   +V+E+M  + V+P+  TY+ L+ ++ +     + +  +
Sbjct: 378 DTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFF 437

Query: 180 KEMT-------DNGLSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
            E+        D G  P    +N     L + G+ +  E    V+R++ ++G Q   +  
Sbjct: 438 DELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAE---RVFRQLMKRGTQDPPSYK 494

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
             +L  C + G  +  F++   M   +   PD+ T+  MI     +G    A     +ML
Sbjct: 495 TLILGHCRE-GTPEAGFDLLVLMLRRDFV-PDAETYGLMIDGLLKKGDPVLAHKSLEKML 552

Query: 290 EAGFEPNLFVLTSLI 304
           ++   P   +  S++
Sbjct: 553 KSSHLPTTAIFHSIL 567


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 118/235 (50%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR+GN++ A   ++  +      D   ++ LI+ Y   G     +N+  EM   G   ++
Sbjct: 386 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDV 445

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN +L  + + K   +   ++ EMT+  L P+  T   L+  + +    ++ + ++++
Sbjct: 446 VTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQK 505

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MKEK ++L V  YNTLL     VG  D A EI+ DM S E   P   ++S ++     +G
Sbjct: 506 MKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE-ILPTPISYSILVNALCSKG 564

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++EA  +++EM+    +P + +  S+I+ Y ++    D    L ++   G  PD
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPD 619



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 165/382 (43%), Gaps = 19/382 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G VE+A+G+Y         I+    + ++      G  +       +++  GV P++
Sbjct: 211 VRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDI 270

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+          +   +   M   G SP   TY +++    +    E    V+ E
Sbjct: 271 VTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAE 330

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G+    T Y +LL      G   E  ++F DM+ S +  PD   FSSM+++ +  G
Sbjct: 331 MLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR-SRDVVPDLVCFSSMMSLFTRSG 389

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + +A   FN + EAG  P+  + T LIQ Y +       +   N + + G   D     
Sbjct: 390 NLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYN 449

Query: 337 CLLNVMTQTPKEELGK----LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
            +L+ + +  ++ LG+      E  E++     Y + +L++     G+ +  A ELF  +
Sbjct: 450 TILHGLCK--RKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQN-AMELFQKM 506

Query: 393 SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR----SPTQWSLHLKSL 448
            +   +      +D+     LL+   K+ ++    E++ D+ S+    +P  +S+ + +L
Sbjct: 507 KEKRIR------LDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNAL 560

Query: 449 -SLGAALTALHIWINDLSKALE 469
            S G    A  +W   +SK ++
Sbjct: 561 CSKGHLAEAFRVWDEMISKNIK 582



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 112/238 (47%), Gaps = 1/238 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  L+ + + ++ R+D   ++TL+  +G  G+ D    ++ +M +  + P  I
Sbjct: 492 KLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPI 551

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+ L++ +       +   ++ EM    + P      S+++ Y R+    D  S   +M
Sbjct: 552 SYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKM 611

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRG 276
             +G       YNTL+          +AF + + M+  +    PD +T++S++     + 
Sbjct: 612 ISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQN 671

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           ++ EAE +  +M+E G  P+    T +I  +       +  R  + + + G +PDD+F
Sbjct: 672 QMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 74/165 (44%), Gaps = 1/165 (0%)

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N + +  L+R Y +AR   +    +  ++ KG  +S+   N L+     +G+ + A+ ++
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           +++ S      + +T + M+      GK+ +     +++ E G  P++    +LI  Y  
Sbjct: 224 QEI-SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS 282

Query: 310 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
               ++    +N +P  G +P       ++N + +  K E  K V
Sbjct: 283 KGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 117/242 (48%), Gaps = 3/242 (1%)

Query: 108 LYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
           L+  A ++ W   PN  ++ST+I  + T G  D   N++ EM   G+ P+++TY  ++D 
Sbjct: 188 LHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDG 247

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
           + +A+   + + ++++M DNG+ PN +TY  L+  Y      ++ + +  EM   G + +
Sbjct: 248 LCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPN 307

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
              Y +LL      G   EA   F+ M   +  +P   T+  M+   + +G +SE   + 
Sbjct: 308 CCTYGSLLNYLCKNGRCREARFFFDSM-IGKGIKPSVTTYGIMLHGYATKGALSEMHDLL 366

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           N M+  G  PN  +       Y K    D  +   N++ + G++PD    G L++ + + 
Sbjct: 367 NLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKL 426

Query: 346 PK 347
            +
Sbjct: 427 GR 428



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 105/231 (45%), Gaps = 3/231 (1%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN   F+     Y   G  D  ++++ +M+  G+ P+ ++Y  L+D + +  R    +
Sbjct: 374 ISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAE 433

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             + +M + G++P+   ++SL+         E    ++ EM   G+  ++  +NT+L   
Sbjct: 434 VKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNL 493

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   E   + + ++     +PD  +++++I      G + EA  +   M+  G +P+
Sbjct: 494 CKEGRVMEGQRLVDSIECM-GVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPD 552

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
            F   +L+  Y KA R D       ++   GITP       +L+ + QT +
Sbjct: 553 SFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKR 603



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 124/295 (42%), Gaps = 37/295 (12%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+  + L+    +     D   ++T+I     A  FD    V+++M   GVKPN+ TY
Sbjct: 217 GQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTY 276

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR-------------------- 199
           N L+       +  +V  + +EM+  G  PN  TY SLL                     
Sbjct: 277 NCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIG 336

Query: 200 --------AYGRARYGEDTLSVYREMKE-------KGMQLSVTLYNTLLAMCADVGYTDE 244
                    YG   +G  T     EM +        G+  +  ++N   +  A  G  D+
Sbjct: 337 KGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDK 396

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A +IF  M+  +   PD+ ++ ++I      G+V +AE  FN+M+  G  P++ V +SL+
Sbjct: 397 AMDIFNKMR-QQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLV 455

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECVE 358
                  + + V      +  +GI P+  F   +L N+  +    E  +LV+ +E
Sbjct: 456 YGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIE 510



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 115/228 (50%), Gaps = 4/228 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG ++ A  L +   +   + D  +++TL+  Y  AG  D   + + +M + G+ P ++T
Sbjct: 531 AGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVT 590

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +L  + + KR  + K +Y  M ++G   +  TY  +L    ++   ++ + +++ + 
Sbjct: 591 YNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLC 650

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            KG+QL++  +N ++      G  ++A ++F  + ++   Q +  T+  ++      G +
Sbjct: 651 SKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQ-NVVTYRLVVENLIEEGSL 709

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            E +++F+ M + G  PN  +L +L++   +     D+ RA   L +L
Sbjct: 710 EEFDSLFSAMEKNGTAPNSQMLNALVR---RLLHRGDISRAGAYLSKL 754



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 7/241 (2%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           + + ++ +GV+P++I+YN L+D    A    +   + + M   GL P+  +Y +LL  Y 
Sbjct: 505 LVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYC 564

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +A   +   S +R+M   G+   V  YNT+L          EA E++ +M +S   + D 
Sbjct: 565 KAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINS-GTKWDI 623

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
           +T++ ++        V EA  MF  +   G + N+     +I    K  R +D +     
Sbjct: 624 YTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAA 683

Query: 323 LPELGITPD-DRFCGCLLNVMTQTPKEELGKLVECVEKSNSK-----LGYVVKLLLEEQD 376
           +P  G+  +   +   + N++ +   EE   L   +EK+ +      L  +V+ LL   D
Sbjct: 684 IPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGD 743

Query: 377 I 377
           I
Sbjct: 744 I 744



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 6/229 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V     L D       R D  +++TLI  +  AG  D    + E M ++G+KP+  
Sbjct: 495 KEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSF 554

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN LL    +A R     + +++M  NG++P   TY ++L    + +   +   +Y  M
Sbjct: 555 SYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNM 614

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G +  +  YN +L         DEA ++F+++  S+  Q +  TF+ MI      G+
Sbjct: 615 INSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNL-CSKGLQLNIITFNIMIGALLKGGR 673

Query: 278 VSEAEAMFNEMLEAGFEPNL----FVLTSLIQCYGKAQRTDDVVRALNR 322
             +A  +F  +   G   N+     V+ +LI+  G  +  D +  A+ +
Sbjct: 674 KEDAMDLFAAIPANGLVQNVVTYRLVVENLIE-EGSLEEFDSLFSAMEK 721



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/276 (19%), Positives = 112/276 (40%), Gaps = 46/276 (16%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY-EEMKAIGVKPNM 156
           R G++E  F  +       WR+D    + L+            ++V  + M  +G  P+ 
Sbjct: 106 RMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDT 165

Query: 157 ITYNNLLD-----------------------------------------TMGRAKRPWQV 175
           ++YN LL                                          T G+  +P+  
Sbjct: 166 VSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYN- 224

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             ++ EM D G+ P+  TY +++    +A+  +   +V+++M + G++ ++  YN L+  
Sbjct: 225 --LFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHG 282

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              +G   E   + E+M S+   +P+  T+ S++      G+  EA   F+ M+  G +P
Sbjct: 283 YLSIGKWKEVVRMLEEM-SAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKP 341

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++     ++  Y       ++   LN +   GI+P+
Sbjct: 342 SVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPN 377



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 115/247 (46%), Gaps = 14/247 (5%)

Query: 88  SKLKEKSYDTRAGNVEMAFGLYD--------RARNEKWRIDPNAFSTLIKLYGTAGNFDG 139
           SKL E+++   A    M   ++         ++  +K+RI   A S+   L   A   D 
Sbjct: 752 SKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSS--ALIKKARRIDD 809

Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
             +++ EM   G+ P+++TYN +L  + +  R  + K +Y  M ++    N  TY  +L 
Sbjct: 810 AYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILN 869

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
              ++   ++   +++ +  KG+QL++  +N ++      G  ++A ++F  + ++    
Sbjct: 870 GLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN-GLV 928

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           PD  T+  +       G + E + +F  M ++G   +  +L +L++   +  +  D+ RA
Sbjct: 929 PDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVR---RLLQRGDISRA 985

Query: 320 LNRLPEL 326
              L +L
Sbjct: 986 GAYLSKL 992


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 1/243 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  L    + +   ++   F+T+I  Y   G  D  L +   M+ +GV+ ++ 
Sbjct: 329 KIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIY 388

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L   + R  R  + KT+   M + G+ PN+ TY +L+  + +     +   ++REM
Sbjct: 389 TYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREM 448

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG   SV  YN ++      G   EA E F      +   PD +T++S++      GK
Sbjct: 449 AEKGATPSVVTYNVMIDGYTKKGSIREA-ERFRKEMEKKGFVPDVYTYASLVHGHCVNGK 507

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V  A  +F EM + G EPN+   T+LI    K  R++   +  + + + G+ PDD     
Sbjct: 508 VDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSA 567

Query: 338 LLN 340
           L+ 
Sbjct: 568 LVG 570



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +I  Y  AGN      V +E    GV+PN  TY  L++   +  +    + +  +M 
Sbjct: 285 YTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQ 344

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+  N   + +++  Y R    +D L +   M++ G++L +  YNTL      V   D
Sbjct: 345 GQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLD 404

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +   M       P+  T++++I+I    G + EA  +F EM E G  P++     +
Sbjct: 405 EAKTLLHIMIEM-GVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVM 463

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I  Y K     +  R    + + G  PD
Sbjct: 464 IDGYTKKGSIREAERFRKEMEKKGFVPD 491



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 2/234 (0%)

Query: 99  AGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           AG +  A GL +RA       + P A S ++     +G  D    + ++M   GV  N +
Sbjct: 154 AGRLADAAGLLERALGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNAL 213

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN+LLD   R K   +V+ I + M + G+     TY  L+ +   AR      +++ EM
Sbjct: 214 CYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEM 273

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K   +   V LY  ++      G    A ++ ++   +   +P+  T+  +I      G+
Sbjct: 274 KANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGN-GVEPNERTYGVLINGFCKIGQ 332

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  AE +  +M   G   N  +  ++I  Y +    DD ++    + ++G+  D
Sbjct: 333 MEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELD 386



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 7/150 (4%)

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
           +D   +  +M   G+ L+   YN+LL       D G   E  EI E+    E  +    T
Sbjct: 194 DDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMEN----EGIEATVGT 249

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++ ++   S    +S+ EA+FNEM       ++++ T++I  Y +A       + L+   
Sbjct: 250 YTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECV 309

Query: 325 ELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
             G+ P++R  G L+N   +  + E  +++
Sbjct: 310 GNGVEPNERTYGVLINGFCKIGQMEAAEML 339



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 50/102 (49%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+ G++  A         + +  D   +++L+  +   G  D  L ++EEMK  G +PN+
Sbjct: 468 TKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNV 527

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           + Y  L+  + +  R      +Y +M   GL P+ + Y++L+
Sbjct: 528 VAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV 569


>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 426

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   +  N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+A   +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++KS +N   D     + I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYEKAGLVAHAKRLLHELKSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VRDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y +LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N   +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GKA + D       +L   G+  D
Sbjct: 262 SIWGKAGKLDRAAMLFQKLRSSGVEID 288



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    T+L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 84/179 (46%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++G AG  D    +++++++ GV+ + + Y  ++    +A      K
Sbjct: 250 IEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAK 309

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 310 RLLHELKSPDNIPR-DTAIHILAGAGRI---EEATYVFRQAIDAGEVRDITVFERMIHLF 365

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+F+ M+      PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 366 SKYKKYANVVEVFDKMRGL-GYFPDS---NVIALVLNAYGKLHEFDKANGVYMEMQEVG 420


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 2/213 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++S+LI     AG  +  L V E MK    +PN++++  LL    +     + + I+
Sbjct: 391 DVMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIF 450

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M D+G  PN   + SLL AY + R  +  L    +++E GM+L V  ++T ++  A  
Sbjct: 451 HAMLDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKA 510

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  + A E F+ M  S  C P+  T+SS+I      G   +AE++F  ML  G  PN   
Sbjct: 511 GQWELAEEKFKQMTKS-GCLPNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQA 569

Query: 300 LTSLIQCYGKAQRTDDVVRALNRL-PELGITPD 331
             +L++ YGK +  + V+     + P+ G+ PD
Sbjct: 570 CCALLRAYGKGKELEKVIIFFESMEPQYGVEPD 602



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 112/219 (51%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  I P+   F+ L+     AG +D   +  + M+A G    +  Y  +     RA++P
Sbjct: 279 EKLGIVPDRITFTGLVSATTAAGLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARARKP 338

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   +++ M + G      +Y +LL AY R    ED +  +  +++KG+   V  +++L
Sbjct: 339 REAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSL 398

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           ++ CA+ G  + A E+ E MK+S +CQP+  ++  ++      G   +AE +F+ ML++G
Sbjct: 399 ISACANAGQAERALEVLERMKTS-DCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSG 457

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             PN     SL+  Y K ++   V+  + +L ELG+  D
Sbjct: 458 CPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLD 496



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 1/214 (0%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R+D  + + ++   G   N+     V+   ++ GV+PN      L+  +G  +R  Q   
Sbjct: 179 RVDVRSMNVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALK 238

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +++ M   G+     T+ +L+ A GR   G+  + ++ EM++ G+      +  L++   
Sbjct: 239 LFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSATT 298

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  D A + F DM  +         +  M   C+   K  EA  +F  MLE G+E  L
Sbjct: 299 AAGLWDRA-QSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKL 357

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               +L+  Y +  + +D +R    + + G+TPD
Sbjct: 358 ESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPD 391



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 2/205 (0%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  A+ +L+  Y     +   L   E+++ +G+K +++ ++  +  + +A +    +  
Sbjct: 460 PNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAEEK 519

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +K+MT +G  PN  TY+SL++AYG     E   SV++ M   G++ +      LL     
Sbjct: 520 FKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYGK 579

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               ++    FE M+     +PD + ++++   C   G+   A    + M  AG  P+  
Sbjct: 580 GKELEKVIIFFESMEPQYGVEPDKYAYAAIFWACWTCGEWQRAVKYIDRMEMAGCTPDSV 639

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRL 323
           + T+LI  Y    + D  ++ L R+
Sbjct: 640 IYTTLINMYEANGQIDKAMQVLERM 664



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 36/173 (20%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           ++D  A+ST I     AG ++     +++M   G  PN++TY++L+   G      + ++
Sbjct: 494 KLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAES 553

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK----------------- 220
           ++K M   G+ PN     +LLRAYG+ +  E  +  +  M+ +                 
Sbjct: 554 VFKLMLRVGIRPNPQACCALLRAYGKGKELEKVIIFFESMEPQYGVEPDKYAYAAIFWAC 613

Query: 221 -------------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
                              G      +Y TL+ M    G  D+A ++ E M S
Sbjct: 614 WTCGEWQRAVKYIDRMEMAGCTPDSVIYTTLINMYEANGQIDKAMQVLERMGS 666


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 1/230 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   E A  +Y R + E+ R +   F+ +I +YG A      + V+ EMK+IG KPN+ 
Sbjct: 257 KARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNIC 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R     + + +++EM   G  P+   Y +L+ AY RA   +    ++  M
Sbjct: 317 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLM 376

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN L+      G  ++A  +FE++K      P   +   ++   +  G 
Sbjct: 377 QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELK-QRGMSPTMKSHMLLLAAHARSGN 435

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            +  E +  ++ ++G  P+ F L +++  Y +A R DD+ R    +   G
Sbjct: 436 ATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG 485



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L++ Y  AG+      V  EM+  G+ PN   YN  LD + +A+   +   +Y+ 
Sbjct: 211 DTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQR 270

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M       N  T+  ++  YG+A+    ++ V+ EMK  G + ++  Y  L+   A  G 
Sbjct: 271 MKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGL 330

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A E+FE+M+ + + +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 331 CEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYN 389

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
            L+  YG+A   +D       L + G++P
Sbjct: 390 ILVDAYGRAGLHEDAEAVFEELKQRGMSP 418



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 126/267 (47%), Gaps = 12/267 (4%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           AG++  A G+    R     I PNA  ++  +     A   +  + VY+ MK    + N 
Sbjct: 223 AGSLHRAEGVISEMREHG--IPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANT 280

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T+  +++  G+AK+P     ++ EM   G  PN  TY +L+ A+ R    E    V+ E
Sbjct: 281 ETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEE 340

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G +  V  YN L+   +  G    A EIF  M+    C+PD  +++ ++      G
Sbjct: 341 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHM-GCEPDRASYNILVDAYGRAG 399

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDDR 333
              +AEA+F E+ + G  P +     L+  +   G A R ++V+  L++    G+TPD  
Sbjct: 400 LHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHK---SGLTPDTF 456

Query: 334 FCGCLLNVMTQTPK-EELGKLVECVEK 359
               +LN   +  + +++ +L   +E+
Sbjct: 457 ALNAMLNAYARAGRLDDMERLFAAMER 483



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 1/179 (0%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P++I YN L+++ G+ ++  + ++IY  + +    P  +TYA LLRAY  A        
Sbjct: 172 RPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEG 231

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           V  EM+E G+  + T+YN  L        T++A E+++ MK  E C+ ++ TF+ MI + 
Sbjct: 232 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMK-RERCRANTETFTLMINVY 290

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               +   +  +FNEM   G +PN+   T+L+  + +    +        + + G  PD
Sbjct: 291 GKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 349



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 100/215 (46%), Gaps = 1/215 (0%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           +R D   ++ LI+ YG     +   ++Y  +      P   TY  LL     A    + +
Sbjct: 171 FRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAE 230

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM ++G+ PN   Y + L    +AR  E  + VY+ MK +  + +   +  ++ + 
Sbjct: 231 GVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVY 290

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                   + ++F +MKS   C+P+  T+++++   +  G   +AE +F EM +AG EP+
Sbjct: 291 GKAKQPMSSMKVFNEMKSI-GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 349

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++   +L++ Y +A          + +  +G  PD
Sbjct: 350 VYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPD 384



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 5/232 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG  + A  ++   ++     D  +++ L+  YG AG  +    V+EE+K  G+ P M
Sbjct: 361 SRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTM 420

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    R+    + + +  ++  +GL+P+     ++L AY RA   +D   ++  
Sbjct: 421 KSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAA 480

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+ +G    V  YN  +      GY     E      ++     D  T+++ +   + R 
Sbjct: 481 MERRG-DADVGTYNVAVNAYGRAGYVGR-MEAAFAAVAARGLAADVVTWTARMGAYARRK 538

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV---VRALNRLPE 325
           +      M  EM++AG  P+      L+      ++ + V   VR++++ P+
Sbjct: 539 EYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHKKPK 590


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 3/240 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G V+ A  L D  ++  +  D   ++  I  +G  G  D     + EMKA G+ P+ 
Sbjct: 107 SREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDD 166

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++  + +A R  +   I+++M  N   P    Y +++  YG A   ++  S+   
Sbjct: 167 VTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLER 226

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + KG   SV  YN +L      G TD+A  IFE+MK   +  P+  T++ +I +    G
Sbjct: 227 QRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMK--RDAMPNLPTYNIIIGMLCKAG 284

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FC 335
            V  A  + + M EAG  PN+  +  +I    KAQ+ D+       +     +PD   FC
Sbjct: 285 NVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFC 344



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 132/261 (50%), Gaps = 3/261 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A+ +Y+R  +     +   +++LI+ +      +    +Y+EM   G  P+++
Sbjct: 352 KQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLM 411

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + +++E+   G  P+  +Y+ L+ +  +A +  +T  +Y  M
Sbjct: 412 LLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAM 471

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K++G  L    YNT++      G  ++A+++ E+MK+  +  P   T+ S++   +   +
Sbjct: 472 KDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGH-HPTVVTYGSVVDGLAKIDR 530

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F E    G E N  + +SLI  +GK  R D+    +  + + G+TP+     C
Sbjct: 531 LDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNC 590

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           LL+ + +   EE+ + + C +
Sbjct: 591 LLDGLVKA--EEINEALVCFQ 609



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG     + LY   +++   +D  A++T+I  +  +G  +    + EEMK +G  P +
Sbjct: 456 VKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTV 515

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++D + +  R  +   +++E   NG+  N   Y+SL+  +G+    ++   V  E
Sbjct: 516 VTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEE 575

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           M +KG+  +V  +N LL         +EA   F+ MK  + C P+  T+  +I  +C  R
Sbjct: 576 MMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLK-CTPNQITYCILINGLCKVR 634

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + EM + G +PN    T++I    K+           R    G  PD
Sbjct: 635 -KFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPD 689



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 117/251 (46%), Gaps = 2/251 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +  G  +    L+++ +   + ++ +  +TLI+++   G  D  L++ +EMK+     ++
Sbjct: 72  SEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADI 131

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + YN  +D  G+  +       + EM  NGL P+  TY S++    +A   ++ + ++ +
Sbjct: 132 VLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQ 191

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++         YNT++      G  DEA+ + E  + ++ C P    ++ ++T    +G
Sbjct: 192 MEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQR-AKGCIPSVVAYNCILTCLGKKG 250

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  +A  +F EM      PNL     +I    KA   +   +  + + E G+ P+ R   
Sbjct: 251 KTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTIN 309

Query: 337 CLLNVMTQTPK 347
            +++ + +  K
Sbjct: 310 IMIDRLCKAQK 320



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 1/207 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A++    ++   +S+LI  +G  G  D    V EEM   G+ PN+ T+N LLD
Sbjct: 534 AYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLD 593

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M D   +PN  TY  L+    + R        ++EM+++G++ 
Sbjct: 594 GLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKP 653

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y  +++  A  G   +A  +FE  ++S    PDS ++++MI   S   +  +A  +
Sbjct: 654 NTITYTAMISGLAKSGNVAQASSLFERFRASGGI-PDSASYNAMIEGLSIANRALDAYQL 712

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           F E    G   +     +L+    KA+
Sbjct: 713 FEETRLKGCSIHTKTCVALLDALHKAE 739



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 1/219 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF L    R+ K+R   +A++TLI      G  D  L ++ +M+ +G + N+     L+ 
Sbjct: 45  AFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIR 104

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R  R     ++  EM  N    +   Y   +  +G+    +     + EMK  G+  
Sbjct: 105 VFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVP 164

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               Y +++ +       DEA EIFE M+ +    P ++ +++MI      GK  EA ++
Sbjct: 165 DDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQV-PCAYAYNTMIMGYGSAGKFDEAYSL 223

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
                  G  P++     ++ C GK  +TD  +R    +
Sbjct: 224 LERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEM 262



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 6/238 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G  + A  +++  + +     PN   ++ +I +   AGN +    V + MK  G+ PN
Sbjct: 248 KKGKTDKALRIFEEMKRDAM---PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPN 304

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + T N ++D + +A++  +  +I++ M     SP+  T+ SL+   G+    +D   +Y 
Sbjct: 305 VRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYE 364

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M +     +V +Y +L+         ++  +++++M  S  C PD    ++ +      
Sbjct: 365 RMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRS-GCSPDLMLLNTYMDCVFKA 423

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           G+  +  A+F E+   GF P+    + LI    KA    +       + + G   D R
Sbjct: 424 GETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTR 481



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 1/190 (0%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           NFD    +  EM   G  P   T   L+ +  ++++  +   + + M      P ++ Y 
Sbjct: 6   NFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYT 65

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +L+ A       +  L+++ +M+E G +++V L  TL+ + +  G  D A  + ++MKS+
Sbjct: 66  TLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSN 125

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
                D   ++  I      GKV  A   F+EM   G  P+    TS++    KA R D+
Sbjct: 126 -TFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDE 184

Query: 316 VVRALNRLPE 325
            V    ++ +
Sbjct: 185 AVEIFEQMEQ 194


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 116/230 (50%), Gaps = 1/230 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D     Y EM   G+ PN++TY++++  + +A+   +   + 
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ PN  TY S++  Y  +   ++ +   ++M   G++  V  YN+L+      
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++F+ M +    +P+  T+ +++   + +G + E   + + M+  G  PN +V
Sbjct: 318 GRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            + LI  Y K  + D  +   +++ + G+ PD    G ++ ++ ++ + E
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 144 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  LL+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 201 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 258
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            PD  +++++I      G + +A   ++EML+ G  PN+   +S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 319 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 353
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 4/207 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G  + A G   +  ++    D   +++L+      G       +++ M   G+KP + T
Sbjct: 282 SGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  LL          ++  +   M  NG+ PN   ++ L+ AY +    +  + V+ +M+
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           ++G+      Y T++ +    G  ++A   FE M   E   P +  ++S+I       K 
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM-IDERLSPGNIVYNSLIHSLCIFDKW 460

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            +A+  F   L+   E  ++ L SLIQ
Sbjct: 461 DKAKDYF---LKCWIEAFVWTLFSLIQ 484



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 27/139 (19%), Positives = 62/139 (44%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + +   + TL++ Y T G       + + M   G+ P
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N   ++ L+    +  +  Q   ++ +M   GL+P+  TY +++    ++   ED +  +
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 215 REMKEKGMQLSVTLYNTLL 233
            +M ++ +     +YN+L+
Sbjct: 433 EQMIDERLSPGNIVYNSLI 451


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 1/225 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  +Y R + E+ R +   F+ +I +YG A      + V+ EMK+IG KPN+ TY  L
Sbjct: 64  EKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTAL 123

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++   R     + + +++EM   G  P+   Y +L+ AY RA   +    ++  M+  G 
Sbjct: 124 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGC 183

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +     YN L+      G  ++A  +FE++K      P   +   ++   +  G  +  E
Sbjct: 184 EPDRASYNILVDAYGRAGLHEDAEAVFEELK-QRGMSPTMKSHMLLLAAHARSGNATRCE 242

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            +  ++ ++G  P+ F L +++  Y +A R DD+ R    +   G
Sbjct: 243 EVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG 287



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L++ Y  AG+      V  EM+  G+ PN   YN  LD + +A+   +   +Y+ 
Sbjct: 13  DTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQR 72

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M       N  T+  ++  YG+A+    ++ V+ EMK  G + ++  Y  L+   A  G 
Sbjct: 73  MKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGL 132

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A E+FE+M+ + + +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 133 CEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYN 191

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
            L+  YG+A   +D       L + G++P
Sbjct: 192 ILVDAYGRAGLHEDAEAVFEELKQRGMSP 220



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 126/267 (47%), Gaps = 12/267 (4%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           AG++  A G+    R     I PNA  ++  +     A   +  + VY+ MK    + N 
Sbjct: 25  AGSLHRAEGVISEMREHG--IPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANT 82

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T+  +++  G+AK+P     ++ EM   G  PN  TY +L+ A+ R    E    V+ E
Sbjct: 83  ETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEE 142

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G +  V  YN L+   +  G    A EIF  M+    C+PD  +++ ++      G
Sbjct: 143 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHM-GCEPDRASYNILVDAYGRAG 201

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDDR 333
              +AEA+F E+ + G  P +     L+  +   G A R ++V+  L++    G+TPD  
Sbjct: 202 LHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHK---SGLTPDTF 258

Query: 334 FCGCLLNVMTQTPK-EELGKLVECVEK 359
               +LN   +  + +++ +L   +E+
Sbjct: 259 ALNAMLNAYARAGRLDDMERLFAAMER 285



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 5/232 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG  + A  ++   ++     D  +++ L+  YG AG  +    V+EE+K  G+ P M
Sbjct: 163 SRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTM 222

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    R+    + + +  ++  +GL+P+     ++L AY RA   +D   ++  
Sbjct: 223 KSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAA 282

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+ +G    V  YN  +      GY     E      ++     D  T+++ +   + R 
Sbjct: 283 MERRG-DADVGTYNVAVNAYGRAGYVGR-MEAAFAAVAARGLAADVVTWTARMGAYARRK 340

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV---VRALNRLPE 325
           +      M  EM++AG  P+      L+      ++ + V   VR++++ P+
Sbjct: 341 EYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHKKPK 392


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 115/228 (50%), Gaps = 4/228 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN + A  ++ R + +  +     ++ LI LYG AG     L ++ EM +   KPN+ 
Sbjct: 237 KGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNIC 296

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R     + + ++++M + GL P+   Y +L+ AY RA Y      ++  M
Sbjct: 297 TYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLM 356

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN L+      G+ D+A  +F+DMK      P   +   +++  S  G 
Sbjct: 357 QHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRV-GITPTMKSHMVLLSAYSKMGS 415

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNR 322
           V++ E + N+M ++G + + +VL S++  YG+     + ++V+R + +
Sbjct: 416 VNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEK 463



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 122/269 (45%), Gaps = 13/269 (4%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ LIK Y  +G  +    V+ EM+  G+  + + YN  ++ + +     + + I+K 
Sbjct: 191 DTYALLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKR 250

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +   P   TY  L+  YG+A      L ++ EM     + ++  Y  L+   A  G 
Sbjct: 251 MKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGL 310

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A E+FE M+ +   +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 311 CEKAEEVFEQMQEA-GLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYN 369

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE--- 358
            L+  YGKA   DD       +  +GITP  +    LL+  ++     +G + +C E   
Sbjct: 370 ILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSK-----MGSVNKCEEILN 424

Query: 359 ---KSNSKLG-YVVKLLLEEQDIEGDFKK 383
              KS  KL  YV+  +L      G F K
Sbjct: 425 QMCKSGLKLDTYVLNSMLNLYGRLGQFGK 453



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 93/179 (51%), Gaps = 1/179 (0%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           KP++I YN L++  G+     + ++ Y ++ +    P  +TYA L++AY  +   E   +
Sbjct: 152 KPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGLLEKAEA 211

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           V+ EM+  G+  S  +YN  +      G +D+A EIF+ MK  + C+P + T++ +I + 
Sbjct: 212 VFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMK-KDACKPTTETYTMLINLY 270

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              GK   A  +F+EM+    +PN+   T+L+  + +    +       ++ E G+ PD
Sbjct: 271 GKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPD 329



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 113/269 (42%), Gaps = 36/269 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG   MA  L+    +   + +   ++ L+  +   G  +    V+E+M+  G++P++ 
Sbjct: 272 KAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVY 331

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L++   RA  P+    I+  M   G  P+  +Y  L+ AYG+A + +D  +V+++M
Sbjct: 332 AYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDM 391

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+  ++  +  LL+  + +G  ++  EI   M  S   + D++  +SM+ +    G+
Sbjct: 392 KRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKS-GLKLDTYVLNSMLNLYGRLGQ 450

Query: 278 -----------------------------------VSEAEAMFNEMLEAGFEPNLFVLTS 302
                                              +   E +F  +   G +P++   TS
Sbjct: 451 FGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTS 510

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
            I  Y K +     +     + + G  PD
Sbjct: 511 RIGAYSKKKLYLKCLEIFEEMIDDGCYPD 539



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 1/227 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG    A  ++   ++     D  +++ L+  YG AG  D    V+++MK +G+ P M
Sbjct: 341 SRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTM 400

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    +     + + I  +M  +GL  +     S+L  YGR         V R 
Sbjct: 401 KSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRV 460

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++      ++ YN L+      G+ +   ++F+ +  S+  +PD  T++S I   S + 
Sbjct: 461 MEKGSYVADISTYNILINRYGQAGFIERMEDLFQ-LLPSKGLKPDVVTWTSRIGAYSKKK 519

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
              +   +F EM++ G  P+      L+       +T+ V   +  +
Sbjct: 520 LYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTM 566


>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
 gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
          Length = 1143

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 4/258 (1%)

Query: 90  LKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 149
           LK    D + G  E AF       ++K   D  AFST+I  Y  A  FD  L +YE M +
Sbjct: 283 LKVYGRDKQIGLAEAAF---QEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYEAMMS 339

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
            G+ P+ +TY  +L  + +A+R      +++++ +  +  +   YA ++  Y +    E+
Sbjct: 340 RGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEE 399

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            L V+  M   G      +YN +L M   +G  DEA ++F  M+  E C    +++++M+
Sbjct: 400 ALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELC-TSKYSYATML 458

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            IC    K   A ++F++M       +  V TS+I  YGKA   D+  +    + EL + 
Sbjct: 459 HICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLL 518

Query: 330 PDDRFCGCLLNVMTQTPK 347
            D +    + NV  +  K
Sbjct: 519 VDVKTFSVMANVRLKAGK 536



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 127/268 (47%), Gaps = 3/268 (1%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++AG VE A  L   AR +   +D  A++T+IK    AG     ++ Y  +  +G++P++
Sbjct: 838  SKAGLVEDADALIHMARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSL 897

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             TY+ ++    ++ R    + ++K++   G  P+   Y+ ++  Y ++   E    ++  
Sbjct: 898  QTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEA 957

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            MK +G++     YN L+   A  G   +A ++  +M  +  C P S TF  +I+  + RG
Sbjct: 958  MKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKA-GCPPSSVTFLLLISAYAHRG 1016

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            K +EAE     M  A   P +     ++  + +A+     + +  ++   GI PD     
Sbjct: 1017 KCNEAENALERMQTAAIRPTVRHYNEVMLAFSRARLPSQAMESYLKMERSGIQPDVVSSR 1076

Query: 337  CLLNVMTQTPKEELGKLVECVEKSNSKL 364
             ++ ++ +    E G  +   +K+ +KL
Sbjct: 1077 TMIRILLEGSMFEEG--LSLYKKTEAKL 1102



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 1/233 (0%)

Query: 101  NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
             +E A GL ++ R    + D    S L+  Y  AG  +    +    +  G+  +++ YN
Sbjct: 807  QLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIVAYN 866

Query: 161  NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
             ++    RA R  +    Y  +T+ GL P+  TY +++  + ++    D   +++++K  
Sbjct: 867  TIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSA 926

Query: 221  GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
            G Q    +Y+ ++   A  G  + A ++FE MK     +P   +++++I   +  G+ ++
Sbjct: 927  GFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMK-LRGLRPHEVSYNNLIDAYARAGQFAK 985

Query: 281  AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            AE +  EM +AG  P+      LI  Y    + ++   AL R+    I P  R
Sbjct: 986  AEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVR 1038



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 113/218 (51%), Gaps = 2/218 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   E+A  ++   + ++  +D   ++++I +YG AG +D    +++EM  + +  ++ 
Sbjct: 463 KADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVK 522

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T++ + +   +A +  +   + +E+   GL+ +   + +LL  Y +A   E     ++ +
Sbjct: 523 TFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFKTL 582

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   +  YN +L++ A+    ++A  +F+ +KSS + QPD   F +M+ +      
Sbjct: 583 VESGIA-DLMAYNDMLSLYAEFDMLEDAKLLFQQLKSS-SIQPDQVWFGTMVKLYCNANM 640

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           V+ AE +  +M E GF P+      LI  YG+A R ++
Sbjct: 641 VAAAEEVLRQMREKGFTPDHITQGILINAYGEANRIEE 678



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 1/198 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++I Y+ LL   GR K+    +  ++EM D  L P+   +++++  Y  A   ++ L++
Sbjct: 274 PSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTM 333

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y  M  +G+  S   Y T+L          +A  ++ED+   E+ +     ++ MITI  
Sbjct: 334 YEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDL-VEESVELSPLAYALMITIYR 392

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G+  EA  +F  ML AG+ P+  +   ++   GK  R D+ V     +    +     
Sbjct: 393 KLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKY 452

Query: 334 FCGCLLNVMTQTPKEELG 351
               +L++  +  K EL 
Sbjct: 453 SYATMLHICEKADKFELA 470



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 114/263 (43%), Gaps = 31/263 (11%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD------------------- 138
            +AG V  A  L+ R +++ + ++ +    LI  YG AG ++                   
Sbjct: 739  KAGQVPPAEMLHSRMQDKGFDVEDSTLGHLIAAYGKAGRYEVLTKLKPELPRNNFVYSSM 798

Query: 139  -GCL----------NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187
             G L           + E+M+ IG+K + +  + LL+   +A        +      +G+
Sbjct: 799  VGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGI 858

Query: 188  SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
              +   Y ++++A  RA   +  +  Y  +   G++ S+  Y+T++++ A  G T +A +
Sbjct: 859  PLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEK 918

Query: 248  IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
            +F+D+KS+   QPD   +S M+   +  G    A  +F  M   G  P+     +LI  Y
Sbjct: 919  MFKDLKSA-GFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAY 977

Query: 308  GKAQRTDDVVRALNRLPELGITP 330
             +A +     + L  + + G  P
Sbjct: 978  ARAGQFAKAEQLLVEMAKAGCPP 1000



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 100/228 (43%), Gaps = 5/228 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AGNVE A   + +   E    D  A++ ++ LY      +    +++++K+  ++P+ 
Sbjct: 567 VKAGNVERATKTF-KTLVESGIADLMAYNDMLSLYAEFDMLEDAKLLFQQLKSSSIQPDQ 625

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + +  ++     A      + + ++M + G +P+  T   L+ AYG A   E+   +   
Sbjct: 626 VWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGILINAYGEANRIEEAAGLLEA 685

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             ++    +  +  + + +C      D+A  +    +  E+   DS  ++ +       G
Sbjct: 686 SAKEDESEAAAI--SRIYLCLKFRLFDKATLLLH--RVLESFTLDSAAYNQLTINFLKAG 741

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           +V  AE + + M + GF+     L  LI  YGKA R + + +    LP
Sbjct: 742 QVPPAEMLHSRMQDKGFDVEDSTLGHLIAAYGKAGRYEVLTKLKPELP 789



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 41/87 (47%)

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA E F  MK   +  P    +S ++ +     ++  AEA F EML+   +P+    +++
Sbjct: 258 EAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTM 317

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           I  Y  A+  D+++     +   GI P
Sbjct: 318 ILNYANAEMFDEMLTMYEAMMSRGIVP 344


>gi|302817236|ref|XP_002990294.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
 gi|300141856|gb|EFJ08563.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
          Length = 1139

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 4/258 (1%)

Query: 90  LKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 149
           LK    D + G  E AF       ++K   D  AFST+I  Y  A  FD  L +YE M +
Sbjct: 279 LKVYGRDKQIGLAEAAF---QEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYEAMMS 335

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
            G+ P+ +TY  +L  + +A+R      +++++ +  +  +   YA ++  Y +    E+
Sbjct: 336 RGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEE 395

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            L V+  M   G      +YN +L M   +G  DEA ++F  M+  E C    +++++M+
Sbjct: 396 ALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELC-TSKYSYATML 454

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            IC    K   A ++F++M       +  V TS+I  YGKA   D+  +    + EL + 
Sbjct: 455 HICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLL 514

Query: 330 PDDRFCGCLLNVMTQTPK 347
            D +    + NV  +  K
Sbjct: 515 VDVKTFSVMANVRLKAGK 532



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 113/242 (46%), Gaps = 3/242 (1%)

Query: 123  AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            A++T+IK     G     ++ Y  +  +G++P++ TY+ ++    ++ R    + ++K++
Sbjct: 863  AYNTIIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDL 922

Query: 183  TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
               G  P+   Y+ ++  Y ++   E    ++  MK +G++     YN L+   A  G  
Sbjct: 923  KSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQF 982

Query: 243  DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             +A ++  +M  +  C P S TF  +I+  + RGK +EAE     M  A   P +     
Sbjct: 983  AKAEQLLVEMAKA-GCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYNE 1041

Query: 303  LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 362
            ++  + +A+     + +  ++   GI PD      ++ ++ +    E G  +   +K+ +
Sbjct: 1042 VMLAFSRARLPRQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFEEG--LSLYKKTEA 1099

Query: 363  KL 364
            KL
Sbjct: 1100 KL 1101



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 113/218 (51%), Gaps = 2/218 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   E+A  ++   + ++  +D   ++++I +YG AG +D    +++EM  + +  ++ 
Sbjct: 459 KADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVK 518

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T++ + +   +A +  +   + +E+   GL+ +   + +LL  Y +A   E     ++ +
Sbjct: 519 TFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDMAWKTLLHCYVKAGNVERATKTFKTL 578

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   +  YN +L++ A+    ++A  +F+ +KSS + QPD   F +M+ +      
Sbjct: 579 VESGIA-DLMAYNDVLSLYAEFDMLEDAKLLFQQLKSS-SIQPDQVWFGTMVKLYCNANM 636

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           V+ AE +  +M E GF P+      LI  YG+A R ++
Sbjct: 637 VAAAEEVLRQMREKGFTPDHITQGILINAYGEANRIEE 674



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 1/198 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++I Y+ LL   GR K+    +  ++EM D  L P+   +++++  Y  A   ++ L++
Sbjct: 270 PSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTM 329

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y  M  +G+  S   Y T+L          +A  ++ED+   E+ +     ++ MITI  
Sbjct: 330 YEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDL-VEESVELSPLAYALMITIYR 388

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G+  EA  +F  ML AG+ P+  +   ++   GK  R D+ V     +    +     
Sbjct: 389 KLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKY 448

Query: 334 FCGCLLNVMTQTPKEELG 351
               +L++  +  K EL 
Sbjct: 449 SYATMLHICEKADKFELA 466



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 24/246 (9%)

Query: 101  NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-----NFDG--------CLNVYEEM 147
             +E A GL ++ R    + D    S L+  Y  AG     +F G        CL      
Sbjct: 803  QLEEAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGEQKIFSFSGRWYPAGYCCLQ----- 857

Query: 148  KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
                   +++ YN ++    R  R  +    Y  +T+ GL P+  TY +++  + ++   
Sbjct: 858  -----HDHIVAYNTIIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRT 912

Query: 208  EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
             D   +++++K  G Q    +Y+ ++   A  G  + A ++FE MK     +P   ++++
Sbjct: 913  RDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMK-LRGLRPHEVSYNN 971

Query: 268  MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            +I   +  G+ ++AE +  EM +AG  P+      LI  Y    + ++   AL R+    
Sbjct: 972  LIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAA 1031

Query: 328  ITPDDR 333
            I P  R
Sbjct: 1032 IRPTVR 1037



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 89/185 (48%), Gaps = 7/185 (3%)

Query: 93   KSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 146
            ++YDT      ++G    A  ++   ++  ++ D   +S ++  Y  +G ++   +++E 
Sbjct: 897  QTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEA 956

Query: 147  MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
            MK  G++P+ ++YNNL+D   RA +  + + +  EM   G  P+  T+  L+ AY     
Sbjct: 957  MKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGK 1016

Query: 207  GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
              +  +    M+   ++ +V  YN ++   +      +A E +  M+ S   QPD  +  
Sbjct: 1017 CNEAENALERMQTAAIRPTVRHYNEVMLAFSRARLPRQAMESYLKMERS-GIQPDVVSSR 1075

Query: 267  SMITI 271
            +MI I
Sbjct: 1076 TMIRI 1080



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 131/322 (40%), Gaps = 15/322 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AGNVE A   + +   E    D  A++ ++ LY      +    +++++K+  ++P+ 
Sbjct: 563 VKAGNVERATKTF-KTLVESGIADLMAYNDVLSLYAEFDMLEDAKLLFQQLKSSSIQPDQ 621

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + +  ++     A      + + ++M + G +P+  T   L+ AYG A   E+   +   
Sbjct: 622 VWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGILINAYGEANRIEEAAGLLEA 681

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             ++    +  +  + + +C      D+A  +    +  E+   DS  ++ +       G
Sbjct: 682 SAKEDESEAAAI--SRIYLCLKFRLFDKATLLLH--RVLESFTLDSAAYNQLTINFLKAG 737

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +V  AE + + M + GF+     L  LI  YGKA R + + R    LP           G
Sbjct: 738 QVLPAEMLHSRMQDKGFDVEDSTLGHLIAAYGKAGRYEVLTRLKPELPRNNFVYSS-MVG 796

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYV-VKLLLEEQDIEGDFKKEATELFNSISKD 395
            L+N       EE   LVE + +   K   V V +LL      G+ K     +F+   + 
Sbjct: 797 ALINC---NQLEEAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGEQK-----IFSFSGRW 848

Query: 396 VKKAYCNCLIDLCVNLNLLENA 417
               YC    D  V  N +  A
Sbjct: 849 YPAGYCCLQHDHIVAYNTIIKA 870



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 2/197 (1%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             ++G  E A  L++  +    R    +++ LI  Y  AG F     +  EM   G  P+ 
Sbjct: 942  AKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSS 1001

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +T+  L+       +  + +   + M    + P    Y  ++ A+ RAR     +  Y +
Sbjct: 1002 VTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYNEVMLAFSRARLPRQAMESYLK 1061

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            M+  G+Q  V    T++ +  +    +E   +++  K+      DS +   +  +    G
Sbjct: 1062 MERSGIQPDVVSSRTMIRILLEGSMFEEGLSLYK--KTEAKLVSDSLSREMVAKLYQGAG 1119

Query: 277  KVSEAEAMFNEMLEAGF 293
            K  EA+ +  +   A F
Sbjct: 1120 KHFEAKYILRQTSGACF 1136



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 41/87 (47%)

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA E F  MK   +  P    +S ++ +     ++  AEA F EML+   +P+    +++
Sbjct: 254 EAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTM 313

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           I  Y  A+  D+++     +   GI P
Sbjct: 314 ILNYANAEMFDEMLTMYEAMMSRGIVP 340


>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 873

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 175/407 (42%), Gaps = 17/407 (4%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L +++G  G F   + ++ +M   GV+P+M+T  N++   G        + + 
Sbjct: 389 DTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVL 448

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + MT  G+ P  + Y  L+ A G A   E+    +  M E G   ++  YN L    A  
Sbjct: 449 EYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARG 508

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLF 298
           G   EA  IF  M ++   Q    +F ++I    C+G ++ +A   + EM ++ F P+  
Sbjct: 509 GLFQEAEAIFSRMSNNAGIQKSKDSFDALIE-AYCQGSRLDDAVKAYMEMRKSRFNPDER 567

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 357
            L  ++  Y  A   D+       L      P       +L++  +  +  +   L+E +
Sbjct: 568 SLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 627

Query: 358 E--KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNL 413
           +  +++S    +  L+  E D   +++     L NS  +  D    + N L+ +      
Sbjct: 628 KTNRASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQ 687

Query: 414 LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEE 473
              A ++L+  +   ++ ++   +   WSL +  +S+G AL A+ +W+N L   L   E+
Sbjct: 688 KGRAARVLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDED 747

Query: 474 FPPLLGI-------NTGHGKHKYSDKGL--ASVFESHLKE-LNAPFH 510
            P L  +         G  +     +GL  A V  S L + L+A FH
Sbjct: 748 LPQLASVVFFFSISRRGEMEKSTVTRGLPIAKVVYSFLNDTLSASFH 794



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 6/240 (2%)

Query: 103 EMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           +M  GL+   R++     R D   ++TL+         D    +   M   GV P+ ++Y
Sbjct: 230 DMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSY 289

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +++D    A    +   ++ EM   G + + + Y  L+ A+ R     D ++V R+M+ 
Sbjct: 290 RHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQA 349

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +   Y  LL +    G  D   ++F +M+++    PD+ T++ +  +    G   
Sbjct: 350 DGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA--VPPDTATYNVLFRVFGDGGFFK 407

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCL 338
           E   +F++ML+ G +P++    +++   G      D    L  +   G+ P  D + G +
Sbjct: 408 EVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLV 467



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 9/227 (3%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW----QVKTI 178
           ++++LI  Y      +    + ++MKA GV P   TYN +L    RA  P      +  +
Sbjct: 176 SYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGL 235

Query: 179 YKEMTDNG---LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + EM  +    + P+  TY +LL A       + +  +   M E G+      Y  ++  
Sbjct: 236 FAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDA 295

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            A  G    A E+F +M ++ +   D+  +  ++   +  G  ++A A+  +M   G  P
Sbjct: 296 FASAGNLSRAAELFSEMAATGHT-ADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAP 354

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
                  L+  YG+  R D  VR L R     + PD      L  V 
Sbjct: 355 TAATYRVLLDLYGRQGRFDG-VRQLFREMRTAVPPDTATYNVLFRVF 400


>gi|242050034|ref|XP_002462761.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
 gi|241926138|gb|EER99282.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
          Length = 535

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 12/242 (4%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+D  R   +  D   ++ ++  +  AG  D    V+ EM+  G+ PN+ TY  ++D
Sbjct: 225 AQALFDSCRT-VFTPDVVLYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNVYTYTAVID 283

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            M RA +  + + +  +M D+G  PN  T+ +++RA+ +A   E  L V+ +M +   + 
Sbjct: 284 AMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMHQLRCEP 343

Query: 225 SVTLYNTLL-AMCAD-VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            +  YN L+   C    G  D A ++ + M  ++ C PD  TF+ M  +    G +  A 
Sbjct: 344 DIITYNFLIETHCGKGQGNLDAALKVLDKM-IAKKCVPDCHTFNPMFRLLVVLGNIGAAH 402

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRF 334
            ++ +M E   +PN+     L++ + K +  D V+R    +   GI P+        + F
Sbjct: 403 KLYEKMRELQCKPNVVTYNCLLKLFNKEKSMDMVLRMKKNMDVEGIEPNMHTYAALIEAF 462

Query: 335 CG 336
           CG
Sbjct: 463 CG 464



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 1/154 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GN++ A  + D+   +K   D + F+ + +L    GN      +YE+M+ +  KPN++TY
Sbjct: 361 GNLDAALKVLDKMIAKKCVPDCHTFNPMFRLLVVLGNIGAAHKLYEKMRELQCKPNVVTY 420

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMK 218
           N LL    + K    V  + K M   G+ PN +TYA+L+ A+ GR  +     ++   ++
Sbjct: 421 NCLLKLFNKEKSMDMVLRMKKNMDVEGIEPNMHTYAALIEAFCGRGNWKRAHATLKEMIE 480

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           EK  + S  + + +L +    G   +  E+ E M
Sbjct: 481 EKSFKPSKQVRDMVLVLLRKAGQLKKHEELVELM 514



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 9/227 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A  L  +  +     +   F+ +++ +  AG  +  L V+ +M  +  +P++I
Sbjct: 287 RAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMHQLRCEPDII 346

Query: 158 TYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           TYN L++T    G+      +K + K M      P+ +T+  + R             +Y
Sbjct: 347 TYNFLIETHCGKGQGNLDAALKVLDK-MIAKKCVPDCHTFNPMFRLLVVLGNIGAAHKLY 405

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M+E   + +V  YN LL +       D    + ++M   E  +P+  T++++I     
Sbjct: 406 EKMRELQCKPNVVTYNCLLKLFNKEKSMDMVLRMKKNM-DVEGIEPNMHTYAALIEAFCG 464

Query: 275 RGKVSEAEAMFNEML-EAGFEPNLFV---LTSLIQCYGKAQRTDDVV 317
           RG    A A   EM+ E  F+P+  V   +  L++  G+ ++ +++V
Sbjct: 465 RGNWKRAHATLKEMIEEKSFKPSKQVRDMVLVLLRKAGQLKKHEELV 511



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y +++D + +       + +  EM +  +  +     +L+R Y RA    +   ++R M+
Sbjct: 138 YASMIDLLAKHHHFSLARHLLDEMRERAVPISSRLIFALIRRYVRAEMPSEAADLFRRME 197

Query: 219 EKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           E G          +LLA  +      EA  +F+  ++     PD   +++++      G+
Sbjct: 198 EYGSGAPEPATLASLLAALSKKRLASEAQALFDSCRTVFT--PDVVLYTAVVHAWCRAGQ 255

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + EAE +F EM ++G  PN++  T++I    +A +       L ++ + G  P+
Sbjct: 256 LDEAERVFAEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPN 309


>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++T++++YG A  F   ++++  M+   ++ N++TYN ++   G+     
Sbjct: 226 KMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHE 285

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+A   +   +++++++  G+++   LY T++
Sbjct: 286 KATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI 345

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                VG    A  +  ++K      PD+    + ITI +  G+  EA  +F +  E+G 
Sbjct: 346 VAYERVGLMGHAKRLLHELK-----LPDNIPRETAITILAKAGRTEEATWVFRQAFESGE 400

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  Y + QR  +V+    ++   G  PD      +LN
Sbjct: 401 VKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLN 447



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 111/214 (51%), Gaps = 1/214 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA   ++A GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++
Sbjct: 35  RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLV 94

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+NL++   R     +  +I+  +  +G++P+   Y S++  YG+A+   +   + +EM
Sbjct: 95  LYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEM 154

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+  +   Y+TLL++  +     EA  +F +MK   NC  D  T + MI +      
Sbjct: 155 NEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV-NCALDLTTCNIMIDVYGQLDM 213

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           V EA+ +F  + +   EPN+    ++++ YG+A+
Sbjct: 214 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAE 247



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 4/202 (1%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           V+EE K     P++  YN +L  + RAK+      ++ EM    L+P+  TY++L+ ++G
Sbjct: 13  VHEEAK---YTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFG 69

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +    +  LS  ++M++  +   + LY+ L+ +   +    +A  IF  +K S    PD 
Sbjct: 70  KEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRS-GITPDL 128

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             ++SMI +        EA  +  EM EAG  PN    ++L+  Y +  +  + +     
Sbjct: 129 VAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAE 188

Query: 323 LPELGITPDDRFCGCLLNVMTQ 344
           + E+    D   C  +++V  Q
Sbjct: 189 MKEVNCALDLTTCNIMIDVYGQ 210



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 117/274 (42%), Gaps = 23/274 (8%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +GKT    K+   V     R  +    +Y T      +AG ++ A  L+ + R+    ID
Sbjct: 278 YGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEID 337

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              + T+I  Y   G       +  E+K     P+ I     +  + +A R  +   +++
Sbjct: 338 QVLYQTMIVAYERVGLMGHAKRLLHELKL----PDNIPRETAITILAKAGRTEEATWVFR 393

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           +  ++G   + + +  ++  Y R +   + + V+ +M+  G      +   +L       
Sbjct: 394 QAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQR 453

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--- 297
             ++A  ++ +M+      PD   F  M+++ S +      E++F + LE+  +PN+   
Sbjct: 454 EFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLF-QRLES--DPNVNSK 509

Query: 298 ---FVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
               V+ +L   Y +A + +D  R +NR+ E GI
Sbjct: 510 ELHLVVAAL---YERADKLNDASRVMNRMRERGI 540


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 5/261 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G    A  L++  R         A++ L+K Y   G+      V  EM+  GVKP+  T
Sbjct: 289 SGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQT 348

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ L+D    A R    + + KEM  + + PN   ++ +L  Y      + +  V ++MK
Sbjct: 349 YSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMK 408

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
             G+Q     YN ++         D A   FE M  SE   PD  T++++I  C C+ G+
Sbjct: 409 SSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERML-SEGIPPDIVTWNTLID-CHCKSGR 466

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
              AE +F+EM + G+ P +     +I   G+ QR + V   L+++   G+ P+      
Sbjct: 467 HDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTT 526

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           L++V  ++ +      +EC+E
Sbjct: 527 LVDVYGKSGR--FSDAIECLE 545



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 4/249 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A   ++R  +E    D   ++TLI  +  +G  D    ++ EM+  G  P + TYN 
Sbjct: 432 LDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNI 491

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++++MG  +R  QV     +M   GL PN  TY +L+  YG++    D +     +K  G
Sbjct: 492 MINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTG 551

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            + + T+YN L+   A  G ++ A   F  M ++E   P     +S+I       + +EA
Sbjct: 552 FKPTSTMYNALINAYAQRGLSELAVNAFRLM-TTEGLTPSLLALNSLINAFGEDRRDAEA 610

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL--- 338
            A+   M E   EP++   T+L++   + ++   V      +   G TPD +    L   
Sbjct: 611 FAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASGCTPDRKARAMLRSA 670

Query: 339 LNVMTQTPK 347
           L  M QT K
Sbjct: 671 LRYMKQTLK 679



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 1/248 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  + +F +    ++   + D + ++ +I  +G     D  +  +E M + G+ P+++T+
Sbjct: 395 GEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTW 454

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   ++ R    + ++ EM   G SP   TY  ++ + G  +  E   +   +M+ 
Sbjct: 455 NTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQS 514

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+Q +   Y TL+ +    G   +A E  E +KS+   +P S  ++++I   + RG   
Sbjct: 515 QGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKST-GFKPTSTMYNALINAYAQRGLSE 573

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A   F  M   G  P+L  L SLI  +G+ +R  +    L  + E  I PD      L+
Sbjct: 574 LAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLM 633

Query: 340 NVMTQTPK 347
             + +  K
Sbjct: 634 KALIRVEK 641



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 5/253 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG+   A      A++      P+    +I   G +G       ++EE++  G++P  
Sbjct: 252 SKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRT 311

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN LL    R       + +  EM   G+ P+  TY+ L+  Y  A   E    V +E
Sbjct: 312 RAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKE 371

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+   +Q +  +++ +LA   D G   ++F++ +DMKSS   QPD   ++ MI       
Sbjct: 372 MEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSS-GVQPDRHFYNVMIDTFGKYN 430

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +  A A F  ML  G  P++    +LI C+ K+ R D      + + + G +P    C 
Sbjct: 431 CLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSP----CI 486

Query: 337 CLLNVMTQTPKEE 349
              N+M  +  E+
Sbjct: 487 TTYNIMINSMGEQ 499



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 114/239 (47%), Gaps = 3/239 (1%)

Query: 95  YDTRAGNVEMAF--GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           Y TR+  ++      LY     +K  ID +  + +I  +  AG+    +      ++ G+
Sbjct: 213 YLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGL 272

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            P   T   ++  +G + R  + + +++E+ +NGL P    Y +LL+ Y R    +D   
Sbjct: 273 NPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEF 332

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           V  EM++ G++     Y+ L+ + A  G  + A  + ++M++S N QP+S+ FS ++   
Sbjct: 333 VVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEAS-NVQPNSYVFSRILANY 391

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +G+  ++  +  +M  +G +P+      +I  +GK    D  +    R+   GI PD
Sbjct: 392 RDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPD 450



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 107/228 (46%), Gaps = 3/228 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PN+  FS ++  Y   G +     V ++MK+ GV+P+   YN ++DT G+    
Sbjct: 373 EASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCL 432

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                 ++ M   G+ P+  T+ +L+  + ++   +    ++ EM+++G    +T YN +
Sbjct: 433 DHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIM 492

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +    +    ++       M+S +  QP+S T+++++ +    G+ S+A      +   G
Sbjct: 493 INSMGEQQRWEQVTAFLSKMQS-QGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTG 551

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           F+P   +  +LI  Y +   ++  V A   +   G+TP       L+N
Sbjct: 552 FKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLIN 599



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 127/283 (44%), Gaps = 7/283 (2%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL--SVY 214
           +TYN L+    R     +   +  +M  +G  P++  Y+S+++   R+   +  +   +Y
Sbjct: 170 LTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLY 229

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            E++   +++   L N ++   +  G    A   F  M  S    P   T  ++I     
Sbjct: 230 AEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMR-FLAMAQSNGLNPKPSTLVAVILALGN 288

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+  EAEA+F E+ E G EP      +L++ Y +     D    ++ + + G+ PD++ 
Sbjct: 289 SGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQT 348

Query: 335 CGCLLNVMTQTPKEELGKLV-ECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSI 392
              L++V     + E  ++V + +E SN +   YV   +L     +G+++K    L +  
Sbjct: 349 YSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMK 408

Query: 393 SKDVK--KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433
           S  V+  + + N +ID     N L++A    E  L+  +  DI
Sbjct: 409 SSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDI 451



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 93/199 (46%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G  +MA  L+   +   +      ++ +I   G    ++       +M++ G++PN I
Sbjct: 463 KSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSI 522

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  G++ R        + +   G  P    Y +L+ AY +    E  ++ +R M
Sbjct: 523 TYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLM 582

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+  S+   N+L+    +     EAF + + MK + N +PD  T+++++       K
Sbjct: 583 TTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKEN-NIEPDVVTYTTLMKALIRVEK 641

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +  A++ EM+ +G  P+
Sbjct: 642 FQKVPAVYEEMVASGCTPD 660


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 128/260 (49%), Gaps = 1/260 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G++EMA  L+ + +   +  D   +++LI  +G  G  D C+ ++E+MK     P
Sbjct: 264 YLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDP 323

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ITYN L++   + +R  +      EM  NGL PN  TY++ + A+ +    ++ +  +
Sbjct: 324 DVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFF 383

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M+   +  +   Y +L+      G   EA ++ E++  +   + +  T+++++     
Sbjct: 384 VDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA-GIKLNVVTYTALLDGLCE 442

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G++ EAE +F  ML AG  PN    T+L+  + KA+  +     L  + E  I PD   
Sbjct: 443 EGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLL 502

Query: 335 CGCLLNVMTQTPKEELGKLV 354
            G +L  +    + E  KL+
Sbjct: 503 YGTILWGLCNESRLEEAKLL 522



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 110/235 (46%), Gaps = 12/235 (5%)

Query: 113 RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           +  K+R+   P + + L+      G  D     +++M A G+K ++ TYN ++D + +  
Sbjct: 210 KMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEG 269

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
                ++++ +M + G +P+  TY SL+  +G+    ++ + ++ +MK+      V  YN
Sbjct: 270 DLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYN 329

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
            L+          +AFE   +MK++   +P+  T+S+ I      G + EA   F +M  
Sbjct: 330 ALINCFCKFERMPKAFEFLHEMKAN-GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRR 388

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
               PN F  TSLI    KA    + ++ +  + + GI          LNV+T T
Sbjct: 389 VALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIK---------LNVVTYT 434



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 114/231 (49%), Gaps = 16/231 (6%)

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           E+K  G+  N + Y  L+D   ++ +  +  T+ +EM D GL     TY +L+    ++ 
Sbjct: 525 EIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSG 584

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
             ++ +  +  M E G+Q +V +Y  L+  +C +  + + A ++F++M   +   PD   
Sbjct: 585 LVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCF-EVAKKLFDEM-LDKGMMPDKIA 642

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++++I      G + EA  + + M+E G E +L   T+LI  +G +  +  V +A N L 
Sbjct: 643 YTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALI--WGLSH-SGQVQKARNLLD 699

Query: 325 EL---GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN--SKLGYVVKL 370
           E+   G+ PD+    CL+          LGK+ E +E  N  +K G +  L
Sbjct: 700 EMIGKGVLPDEVVYMCLIK-----KYYALGKVDEALELQNEMAKRGMITGL 745



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 3/213 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+ NA  ++TL+  Y  +G     L + EEM  +G+    +TY  L+D + ++    +  
Sbjct: 531 INTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAM 590

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             +  M++ GL PN   Y +L+    +    E    ++ EM +KGM      Y  L+   
Sbjct: 591 HHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGN 650

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   EA  +  D       + D   ++++I   S  G+V +A  + +EM+  G  P+
Sbjct: 651 MKHGNLQEALNL-RDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPD 709

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
             V   LI+ Y    + D+ +   N + + G+ 
Sbjct: 710 EVVYMCLIKKYYALGKVDEALELQNEMAKRGMI 742



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 57/120 (47%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E+A  L+D   ++    D  A++ LI      GN    LN+ + M  IG++ ++  Y  L
Sbjct: 622 EVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTAL 681

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  +  + +  + + +  EM   G+ P+   Y  L++ Y      ++ L +  EM ++GM
Sbjct: 682 IWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/473 (20%), Positives = 200/473 (42%), Gaps = 45/473 (9%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A  +E A  LY+  +     +D  +++T++ +Y   G FD  +   +EM++ G+K ++
Sbjct: 365 AKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDV 424

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL   GR     +V+ +++EM    + PN  TY++++  Y +    ++ + VY++
Sbjct: 425 VTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKD 484

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC---- 272
            K+  +++ V  Y +++      G  + +  +   M   +  +P+  TF+S+I       
Sbjct: 485 FKKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAM-IEKGIKPNVVTFNSIIDASRQSP 543

Query: 273 --------SCRGKVSEAEAMFNEMLEAGFE-----PNLFVLTSLIQCYGKAQRTDD---- 315
                   S +      E + + +++  F+       +  +   +       R  D    
Sbjct: 544 TLEYGVHGSSQAVEYPTEQLSSMLIDGAFQNKTGDDRILKMFEQLAAEKAGHREKDRKGR 603

Query: 316 -----VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVK 369
                ++    ++ EL I P+      +LN  ++    E+   L+  +   ++++  V  
Sbjct: 604 QDQHCILWLFQKMHELNIKPNVVTFSAILNACSRCNSFEDASMLLGALRLFDNQVYGVTH 663

Query: 370 LLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426
            LL     +  F  +A  LF+ + +       A+ N L D+         A  ++  G  
Sbjct: 664 GLLMGYREQVWF--QAQTLFDEMRRMDSSTASAFYNALTDMLWQFGQRRGAEMVVTEGRR 721

Query: 427 LEVYTDIQSRSPTQWS---LHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTG 483
             V+         +WS   L L  +S GAA   +H W+ ++   L  G E P ++ I TG
Sbjct: 722 RNVWKG-------EWSISCLDLHLMSCGAACAMVHSWLLNMHSTLFEGSELPKIVTILTG 774

Query: 484 HGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRS 534
            GKH     D  L    E+ L  + +PF  +   +G + +      +WL   S
Sbjct: 775 WGKHSKVMGDGTLKRAVEALLNGMGSPFRIAEGNLGRYYSPGNLLATWLRQPS 827



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 163/367 (44%), Gaps = 26/367 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +  A  L++ AR E       +FS +I  YG  G+F   ++++  M++ GV PN+I
Sbjct: 190 RLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLI 249

Query: 158 TYNNLLDTMGRAKRPWQVKT-IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +YN+L+D   + +  + V    + EM   G+ P+  TY SLL         E    +  E
Sbjct: 250 SYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSE 309

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M +KG+      YNT L      G  D A  + E+M SS    P   T+S+MI  C+   
Sbjct: 310 MDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEM-SSRRVWPTVVTYSTMIDGCAKAN 368

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + +A  ++ EM       +     +++  Y K  R D+ +     +   G+  D     
Sbjct: 369 LLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYN 428

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            LL+   +    +E+ +L E ++  N     +    + +   +G   +EA +++    KD
Sbjct: 429 ALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVY----KD 484

Query: 396 VKKA--------YCNCLIDLCVNLNLLENACKLL----ELGLTLEVYT-----DIQSRSP 438
            KKA        Y + +  LC N  L+E++  LL    E G+   V T     D   +SP
Sbjct: 485 FKKAQLEVDVVFYTSIIDSLCKN-GLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSP 543

Query: 439 T-QWSLH 444
           T ++ +H
Sbjct: 544 TLEYGVH 550


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 4/228 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+++I  Y  AG  +  + VY +M A G+ PN +TYN L++  G+         +
Sbjct: 318 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 377

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y++MT     P+  T++SL+  Y R    +D L ++ +M +  +Q +V  ++ ++     
Sbjct: 378 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 437

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNL 297
              +DEA  +  ++    +  P ++ ++ +I  +C C GKV EA  +   M E G  P+ 
Sbjct: 438 QNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKC-GKVDEANLIRKGMEEKGCRPDK 496

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +  T LI  Y    R  + +   + + E G +PD     C ++ + + 
Sbjct: 497 YTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKA 544



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 96/250 (38%), Gaps = 10/250 (4%)

Query: 98  RAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           R+G    A  L+D+      +  D    S L+     A   D    +  +    G +   
Sbjct: 154 RSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEA 213

Query: 157 ITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             YN L+ ++ GR +    V    + + D   SP+  ++  +++   R    +  L +  
Sbjct: 214 YAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVE 273

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M E G       +N ++             E+   ++    C P+  TF+S+I+     
Sbjct: 274 RMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA 333

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD---- 331
           GK+ +A A++N+M+ +G  PN      LI  YGK       V    ++  L   PD    
Sbjct: 334 GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTF 393

Query: 332 ----DRFCGC 337
               D +C C
Sbjct: 394 SSLIDGYCRC 403


>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           herrerae]
          Length = 433

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 180 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 239

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 299

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++KS +N   D     + I I +  G++ EA  +F + ++AG 
Sbjct: 300 VAYERAGLVAHAKRLLHELKSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGE 354

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 VKDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 401



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 26  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAY 85

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + + +  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 86  NAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVFSEMRE 145

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 146 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 205

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 206 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 264

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 265 SIWGKVGKLDRAAMLFQKLRSSGVEID 291



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   + 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               +  +I+  +  +G  P+   Y +++  +G+A+   +  ++  EMK  G+  +   Y
Sbjct: 61  CDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           +TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M 
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 179

Query: 290 EAGFEPNLFVLTSLIQCYGKAQ 311
           + G EPN+    +L++ YG A+
Sbjct: 180 KMGIEPNVVSYNTLLRVYGDAE 201



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   + 
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +A  IF  +K S    PD   +++MI +        EA A+ +EM  AG  PN    
Sbjct: 62  DYSKAISIFSRLKRS-GFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 164



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 81/176 (46%), Gaps = 7/176 (3%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++G  G  D    +++++++ GV+ + + Y  ++    RA      K
Sbjct: 253 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAK 312

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 313 RLLHELKSPDNIPR-DTAIHILAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLF 368

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +         E+F+ M+      PDS   + ++       ++ +A  ++ EM E G
Sbjct: 369 SKYKKYANVVEVFDKMRGL-GYFPDSNVIALVLNAYGKLHELDKANDVYMEMQEVG 423


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 11/247 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A  L+ + R      +   +++L+     AG  D  + + +EM   G+ PN++
Sbjct: 317 KEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 376

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D + +  +  +   +   M   G+  N   Y +L+  +      E  L +  +M
Sbjct: 377 TYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQM 436

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           K KGM+L V+LY TL+  +C D    DEA  +   M      +P++  +++++      G
Sbjct: 437 KNKGMELDVSLYGTLIWGLCKD-QKVDEAKSLLHKMAGC-GLRPNTVIYTTIMDALFKAG 494

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----- 331
           K SEA A+ +++L++GF+PN+    +LI    KA    + +   N++ ELG+ P+     
Sbjct: 495 KESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYT 554

Query: 332 ---DRFC 335
              D FC
Sbjct: 555 ALIDGFC 561



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 3/220 (1%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           AR  + R+ PN  +    L   A N  G L V      + V PN+ T+N ++D + +   
Sbjct: 158 ARVRQLRVPPNTRTCNHILLRLARNRQGGL-VRRLFDLLPV-PNVFTFNIVIDFLCKEGE 215

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
             + + ++  M   G SP+  TY SL+  YG+    E+   +  EM++ G    V  YN 
Sbjct: 216 LVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNA 275

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           L+   +  G  ++A+  F +MK  +    +  TFS+ +      G V EA  +F +M   
Sbjct: 276 LINCFSKFGRMEKAYSYFGEMK-RQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVR 334

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G  PN F  TSL+    KA R DD +  L+ +   G+ P+
Sbjct: 335 GMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPN 374



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 8/208 (3%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+   +I      G       ++  MKA+G  P+++TYN+L+D  G+     +V+ +
Sbjct: 198 PNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQL 257

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA 237
             EM  +G + +  TY +L+  + +    E   S + EMK +G+  +V  ++T + A C 
Sbjct: 258 VSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCK 317

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           + G   EA ++F  M+      P+ +T++S++      G++ +A  + +EM+  G  PN+
Sbjct: 318 E-GLVQEAMKLFAQMR-VRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNV 375

Query: 298 FVLTSLIQCY---GKAQRTDDVVRALNR 322
              T ++      GK    D+V+  + R
Sbjct: 376 VTYTVMVDGLCKEGKVAEADNVLSLMER 403



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 112/239 (46%), Gaps = 1/239 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N E A  L ++ +N+   +D + + TLI         D   ++  +M   G++PN + Y 
Sbjct: 425 NSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYT 484

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D + +A +  +   +  ++ D+G  PN  TY +L+    +A    + +S + +M+E 
Sbjct: 485 TIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMREL 544

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+  +V  Y  L+     +G  ++A  +  +M   +    D   ++S+I     +  + +
Sbjct: 545 GLDPNVQAYTALIDGFCKIGSLNKAMHLMNEM-IDKGMSLDKVVYTSLIDGYMKQANLQD 603

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           A A+  +M+E+G + +L+  T  I  +       +    L+ +   GITPD     CL+
Sbjct: 604 AFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLI 662



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 115/242 (47%), Gaps = 1/242 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  L+ R +      D   +++LI  YG  G+ +    +  EM+  G   +++
Sbjct: 212 KEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVV 271

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   +  R  +  + + EM   G+  N  T+++ + A+ +    ++ + ++ +M
Sbjct: 272 TYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQM 331

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +GM  +   Y +L+      G  D+A  + ++M   +   P+  T++ M+      GK
Sbjct: 332 RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM-VHQGLVPNVVTYTVMVDGLCKEGK 390

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V+EA+ + + M   G + N  + T+LI  +     ++  +  LN++   G+  D    G 
Sbjct: 391 VAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGT 450

Query: 338 LL 339
           L+
Sbjct: 451 LI 452



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 1/191 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  L  +  +  ++ +   +  LI     AG+    ++ + +M+ +G+ PN+ 
Sbjct: 492 KAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQ 551

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D   +     +   +  EM D G+S +   Y SL+  Y +    +D  ++  +M
Sbjct: 552 AYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKM 611

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+QL +  Y   ++   ++    EA  +  +M  +    PD   ++ +I      G 
Sbjct: 612 IESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGT-GITPDKTVYNCLIRKYQKLGN 670

Query: 278 VSEAEAMFNEM 288
           + EA ++ NEM
Sbjct: 671 MEEASSLQNEM 681



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 4/159 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +AG++  A   +++ R  +  +DPN  A++ LI  +   G+ +  +++  EM   G+  +
Sbjct: 527 KAGSISEAISHFNKMR--ELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLD 584

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            + Y +L+D   +         +  +M ++GL  +   Y   +  +      ++   V  
Sbjct: 585 KVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLS 644

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
           EM   G+    T+YN L+     +G  +EA  +  +M+S
Sbjct: 645 EMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           P+ +TF+ +I      G++ EA A+F  M   G  P++    SLI  YGK    ++V + 
Sbjct: 198 PNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQL 257

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           ++ + + G   D      L+N  ++  + E
Sbjct: 258 VSEMRKSGCAADVVTYNALINCFSKFGRME 287


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 116/230 (50%), Gaps = 1/230 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D     Y EM   G+ PN++TY++++  + +A+   +   + 
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ PN  TY S++  Y  +   ++ +   ++M   G++  V  YN+L+      
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++F+ M +    +P+  T+ +++   + +G + E   + + M+  G  PN +V
Sbjct: 318 GRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            + LI  Y K  + D  +   +++ + G+ PD    G ++ ++ ++ + E
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 1/190 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+D       + D   +STLI  Y  AG  D    +   M ++G+KP+ +TYN L++   
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC 560

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +  R      +++EM  +G+SP+  TY  +L+   + R       +Y  + E G QL ++
Sbjct: 561 KISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELS 620

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YN +L        TDEA  +F+++  ++  Q ++ TF+ MI      G+  EA+ +F  
Sbjct: 621 TYNIILHGLCKNNLTDEALRMFQNLCLTD-LQLETRTFNIMIGALLKVGRNDEAKDLFAA 679

Query: 288 MLEAGFEPNL 297
           +   G  P++
Sbjct: 680 LSANGLVPDV 689



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 1/237 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + +   + TL++ Y T G       + + M   G+ P
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N   ++ L+    +  +  Q   ++ +M   GL+P+  TY +++    ++   ED +  +
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++ +     +YN+L+         D+A E+  +M     C  D+  F+S+I     
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL-DTIFFNSIIDSHCK 491

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+V E+E +F+ M+  G +P++   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 4/221 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG ++ A  L     +   + D   ++TLI  Y      +  L ++ EM++ GV P++IT
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +L  + + +R    K +Y  +T++G     +TY  +L    +    ++ L +++ + 
Sbjct: 587 YNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              +QL    +N ++     VG  DEA ++F  + S+    PD  T+S M      +G +
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAAL-SANGLVPDVRTYSLMAENLIEQGLL 705

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            E + +F  M E G   N  +L S+++   K  +  D+ RA
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVR---KLLQRGDITRA 743



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 144 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  LL+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 201 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 258
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDC 195

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            PD  +++++I      G + +A   ++EML+ G  PN+   +S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 319 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 353
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 103/226 (45%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G VE A   +++  +E+       +++LI        +D    +  EM   G+  + I
Sbjct: 421 KSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTI 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N+++D+  +  R  + + ++  M   G+ P+  TY++L+  Y  A   ++   +   M
Sbjct: 481 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 540

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              GM+     YNTL+     +   ++A  +F +M+SS    PD  T++ ++       +
Sbjct: 541 VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS-GVSPDIITYNIILQGLFQTRR 599

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            + A+ ++  + E+G +  L     ++    K   TD+ +R    L
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 123/246 (50%), Gaps = 8/246 (3%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +++T+I  + T G  D   N++ EM   G++PN++TY  ++D + +A+   + + +
Sbjct: 201 PNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGV 260

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +++M D G+ P+ +TY  L+  Y      ++ + +  EM   G++     Y +LL    +
Sbjct: 261 FQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCN 320

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA   F+ M   +  +P+   +  +I   + +G +SE   + N M+E G  P+  
Sbjct: 321 NGRCREARFFFDSM-IRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHH 379

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           +   +   Y K    D+ +   N++ + G++PD    G L++ + +     LG++ + V 
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCK-----LGRVDDAVL 434

Query: 359 KSNSKL 364
           K N  +
Sbjct: 435 KFNQMM 440



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 2/267 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+ A G++ +  ++  + D + ++ LI  Y + G +   + + EEM A G+KP+  
Sbjct: 250 KAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCY 309

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY +LL+ +    R  + +  +  M   G+ PN   Y  L+  Y       +   +   M
Sbjct: 310 TYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLM 369

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+     ++N +    A     DEA  IF  MK  +   PD   F ++I      G+
Sbjct: 370 VENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMK-QQGLSPDVVNFGALIDALCKLGR 428

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   FN+M+  G  PN+FV  SL+       + +        +   GI PD  F   
Sbjct: 429 VDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNT 488

Query: 338 LL-NVMTQTPKEELGKLVECVEKSNSK 363
           +L N+ T+    +  +L++ +E+  ++
Sbjct: 489 ILCNLCTKGQVMKAQRLIDLMERVGTR 515



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 116/273 (42%), Gaps = 40/273 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV-YEEMKAIGVKPNM 156
           R G +E  F  +       WR++    + L+K    A      +++  + M  +G  P++
Sbjct: 106 RMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDV 165

Query: 157 ITYNNLL--------------------DTMGRAKRPWQVK------------------TI 178
           ++YN LL                    D+ GR+  P  V                    +
Sbjct: 166 VSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNL 225

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + EM D G+ PN  TY +++    +A+  +    V+++M +KG++     YN L+     
Sbjct: 226 FLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLS 285

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +G   E   + E+M S+   +PD +T+ S++      G+  EA   F+ M+  G +PN+ 
Sbjct: 286 IGKWKEVVRMLEEM-SAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVA 344

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   LI  Y       ++   LN + E G++PD
Sbjct: 345 IYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 9/244 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V  A  L D       R D  +++TLI  +   G  D      + M ++G+KP+  TY
Sbjct: 497 GQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTY 556

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL    RA R      +++EM  NG++P   TY+++L      R   +   +Y  M  
Sbjct: 557 NTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMIT 616

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G Q ++ +YN +L   +     DEAF++F+ +  S++ Q +  TF+ MI      G+  
Sbjct: 617 SGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSL-CSKDFQLEITTFNIMIGALFKSGRNE 675

Query: 280 EAEAMFNEMLEAGFEPNLF----VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           +A  +F  +   G  P++F    +  +LI+  G  +  DD+  A+ +    G TP+ R  
Sbjct: 676 DAMHLFATISSYGLVPDVFTYCLIAENLIE-EGYLEEFDDLFSAMEK---SGTTPNSRML 731

Query: 336 GCLL 339
             L+
Sbjct: 732 NALV 735



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 124/282 (43%), Gaps = 9/282 (3%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A   Y    N+  R D   F+T++    T G       + + M+ +G +P++I+Y  L
Sbjct: 465 EKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTL 524

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +       R  +       M   GL P+  TY +LL  Y RA   +D   V+REM   G+
Sbjct: 525 IGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI 584

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
              V  Y+T+L          EA E++ +M +S   Q + W ++ ++   S    V EA 
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGK-QWNIWIYNIILNGLSKNNCVDEAF 643

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL--N 340
            +F  +    F+  +     +I    K+ R +D +     +   G+ P D F  CL+  N
Sbjct: 644 KLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVP-DVFTYCLIAEN 702

Query: 341 VMTQTPKEELGKLVECVEKS----NSK-LGYVVKLLLEEQDI 377
           ++ +   EE   L   +EKS    NS+ L  +V+ LL   DI
Sbjct: 703 LIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDI 744



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 3/194 (1%)

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           I V P++ TY+ L+    R  R       +  +  +G   N      LL+    A+   +
Sbjct: 88  IKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLRE 147

Query: 210 TLSV-YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQPDSWTFS 266
            + +  + M E G    V  YNTLL    +    +EA E+   M  S+  +C P+  +++
Sbjct: 148 AMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYA 207

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           ++I      G+V +A  +F EM++ G +PN+   T++I    KAQ  D       ++ + 
Sbjct: 208 TVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDK 267

Query: 327 GITPDDRFCGCLLN 340
           G+ PD+    CL++
Sbjct: 268 GVKPDNDTYNCLIH 281


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 119/235 (50%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  ++D    E    D  +++TL+  Y   G     L V+ EM   G+ P+++
Sbjct: 93  KAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVV 152

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+    +A    Q   +  +M + GL  N  T+ +L+  + +  + +D L    EM
Sbjct: 153 TFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEM 212

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G+Q SV  YN L+     +G  D A E+  +M+ ++  +PD  T+S++I+     G 
Sbjct: 213 RKCGIQPSVVCYNALINGYCKLGRMDLARELIREME-AKRVKPDVVTYSTIISGYCKVGN 271

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A  +  +ML+ G  P+    +SLI+   + +R +D       + +LG+ PD+
Sbjct: 272 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDE 326



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+E A  L  + R    R++   F+ LI  +   G  D  L   EEM+  G++P+++
Sbjct: 163 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 222

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L++   +  R    + + +EM    + P+  TY++++  Y +    +    + ++M
Sbjct: 223 CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM 282

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG+      Y++L+    +    ++A E+FE+M      QPD +T++++I      G 
Sbjct: 283 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL-GVQPDEFTYTTLIDGHCKEGN 341

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           V +A ++ +EM+  G  P++   + LI    K+ RT +  R L +L      PD+
Sbjct: 342 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDN 396



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 2/233 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMIT 158
           G +E A G+    R      +   ++TL+  +  AG  DG   V   M+  G  KPN++T
Sbjct: 24  GRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 83

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N++++ + +A R    + ++ EM   GL+P+  +Y +LL  Y +     ++L+V+ EM 
Sbjct: 84  FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 143

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           ++G+   V  + +L+      G  ++A  +   M+     + +  TF+++I     +G +
Sbjct: 144 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR-ERGLRMNEVTFTALIDGFCKKGFL 202

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +A     EM + G +P++    +LI  Y K  R D     +  +    + PD
Sbjct: 203 DDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 255



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 4/215 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN ++   L++     G  +  + V  +M+  G  PN +TYN L+    RA      +
Sbjct: 6   VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 65

Query: 177 TIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
            +   M + G   PN  T+ S++    +A   E    V+ EM  +G+   V  YNTLL+ 
Sbjct: 66  RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 125

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              VG   E+  +F +M +     PD  TF+S+I      G + +A A+  +M E G   
Sbjct: 126 YCKVGCLHESLAVFSEM-TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM 184

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           N    T+LI  + K    DD + A+  + + GI P
Sbjct: 185 NEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQP 219



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 2/151 (1%)

Query: 182 MTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           M  +G++PN  TY  L+RA   R R  E+ + V  +M+  G   +   YNTL+A     G
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRL-EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAG 59

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             D A  +   M+   N +P+  TF+SM+      G++  A  +F+EM+  G  P++   
Sbjct: 60  ELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSY 119

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +L+  Y K     + +   + + + G+ PD
Sbjct: 120 NTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 150



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 107/232 (46%), Gaps = 18/232 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +++A  L      ++ + D   +ST+I  Y   GN D    + ++M   GV P+ I
Sbjct: 233 KLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAI 292

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+  +   KR      +++ M   G+ P+  TY +L+  + +    E  LS++ EM
Sbjct: 293 TYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 352

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS---- 273
             KG+   V  Y+ L+   +    T EA  +   +   E+  PD+  + +++  CS    
Sbjct: 353 IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL-YHEDPVPDNIKYDALMLCCSKAEF 411

Query: 274 ----------C-RGKVSEAEAMFNEMLEAGFEPNLFVLTSLI--QCYGKAQR 312
                     C +G + EA+ ++  ML+  ++ +  V + LI   C G   R
Sbjct: 412 KSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVR 463


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 116 KWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAK 170
           + R+ P+ F+  I + G    G      +V ++++A G+ P+++TYN ++D     GRA 
Sbjct: 178 RRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAG 237

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
           R + V  + KEM + G+SPN  T+  L+  Y +       + V+ EMK++G+  SV  Y+
Sbjct: 238 RMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYS 297

Query: 231 TLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
            L+  +C++ G  +E  ++ ++MK      P+  T +S++     +G +++AE   + M 
Sbjct: 298 ALVWGLCSE-GKVEEGVKLVDEMKDL-GLVPNLATLNSVLNGFCKKGMMTDAEGWIDSME 355

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +   +PN+   T L+  Y +  +  D +     +   G+ P+ R   CL+   T+
Sbjct: 356 QKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTR 410



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 1/207 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N   A  +++  + +        +S L+    + G  +  + + +EMK +G+ PN+ T N
Sbjct: 273 NTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLN 332

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           ++L+   +       +     M    + PN  TY  L+  Y R    +D L+V   M  K
Sbjct: 333 SVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGK 392

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++ +  +YN L+A     G       + ++M+  +  + D  T++ +I     +G+V +
Sbjct: 393 GVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMR-MKGVRADIVTYNVLIGALCVKGEVRK 451

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           A  + +EML  G EP      ++I  Y
Sbjct: 452 AVKLLDEMLMVGLEPVHLTYNTIINGY 478



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 1/187 (0%)

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           + M+   VKPN++TY  L+D   R  +      + + M+  G+ PN   Y  L+  + R 
Sbjct: 352 DSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRN 411

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                   +  EM+ KG++  +  YN L+      G   +A ++ ++M      +P   T
Sbjct: 412 GDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMV-GLEPVHLT 470

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++++I     +G +  A  +   M +     N+      I+C  +  + ++    LN + 
Sbjct: 471 YNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEML 530

Query: 325 ELGITPD 331
           E G+ P+
Sbjct: 531 EKGLVPN 537



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 5/185 (2%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E+  + PN   ++ L+  Y         L V E M   GV+PN   YN L+    R    
Sbjct: 355 EQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDW 414

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
             V  +  EM   G+  +  TY  L+ A          + +  EM   G++     YNT+
Sbjct: 415 RSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTI 474

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEA 291
           +    + G    A+EI   M+  +  + +  T++  I  C CR GK+ E   + NEMLE 
Sbjct: 475 INGYCEKGNIKSAYEIRTRMEKGKK-RANVVTYNVFIK-CLCRMGKMEETNELLNEMLEK 532

Query: 292 GFEPN 296
           G  PN
Sbjct: 533 GLVPN 537



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR G+     GL D  R +  R D   ++ LI      G     + + +EM  +G++P  
Sbjct: 409 TRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVH 468

Query: 157 ITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           +TYN +++     G  K  ++++T    M       N  TY   ++   R    E+T  +
Sbjct: 469 LTYNTIINGYCEKGNIKSAYEIRT---RMEKGKKRANVVTYNVFIKCLCRMGKMEETNEL 525

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
             EM EKG+  +   Y+T+     + GYT +
Sbjct: 526 LNEMLEKGLVPNGVTYDTIKEGMMEKGYTPD 556


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +  A G+Y+         D   +STLI  +  A   D    ++E M + G +PN +
Sbjct: 529 RKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAV 588

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL  + +  +P +   ++++M + G  P+  TY +LL  +      E  + V+ EM
Sbjct: 589 TYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEM 648

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG    V  YN LL      G   EA ++F+ M S + C+PD+ + + MI   S   +
Sbjct: 649 VSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQ-CKPDTVSHNIMIDGLSKAKR 707

Query: 278 VSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +A  +F  M  + G  P+L    SLI      QR  + ++    +  L ++PD
Sbjct: 708 LDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPD 762



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 110/235 (46%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +A  V  AF ++    +E+  + D  ++S LI  +           +Y++M  +   PN+
Sbjct: 458 KAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNV 517

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN  L+ + R  R    + +Y+EM   G SP+  TY++L+  +  AR  +    ++  
Sbjct: 518 TTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFET 577

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G + +   YN LL         DEA E+F  M     C PD  T+++++      G
Sbjct: 578 MISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM-VERGCDPDRVTYTTLLYGFCNVG 636

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           K+ +A  +F+EM+  G +P++     L++ + +A +  +  +    +      PD
Sbjct: 637 KIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPD 691



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
           ++I+    AG  D  L++ E M   G  P+M T++ L++ + +A +  + +   + M   
Sbjct: 379 SVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRK 438

Query: 186 --GLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYT 242
               S +  +Y SLL +  +A+      +++  M  E+     V  Y+ L+     +   
Sbjct: 439 ISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDEL 498

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A ++++ M    NC P+  T+++ +     +G++++A+ ++ EM+ AG  P++   ++
Sbjct: 499 GRAEKLYKQMIDL-NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYST 557

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-----EELGKLVE 355
           LI  +  A++ D        +   G  P+     CLL+ + +  K     E   K+VE
Sbjct: 558 LIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE 615



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 3/179 (1%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L  +  ++A   K ++ TYN LLD + R +   Q   ++++M   G+ PN  TYA L+++
Sbjct: 114 LTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQS 173

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF-EDMKSSENCQ 259
               R  ++ +  + EM +KG + S TLY  +       G   E   +F  D++  +   
Sbjct: 174 SCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLE--KRVA 231

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            +     +++     + K  EA  +F  M+++G +P+  + + ++  + K +  D+  +
Sbjct: 232 VEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFK 290



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 117/319 (36%), Gaps = 71/319 (22%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G   + F  + +ARN  ++ D   ++ L+       +      V+E+M A GV PN  
Sbjct: 108 RDGGEALTFFRWLQARN--FKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGF 165

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL---LRAYGRAR-----YGED 209
           TY  L+ +    +   +    + EM D G  P+   Y  +   L+A G+       +G D
Sbjct: 166 TYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRD 225

Query: 210 ---------------------------TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                                         ++R M + G +   T+Y+ ++     +   
Sbjct: 226 LEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENL 285

Query: 243 DEAFEIFEDM---------------------------KSSENCQPDSWTFSS-------M 268
           DEAF++F +M                           ++ E C+    + SS       +
Sbjct: 286 DEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDML 345

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I +    G++ +AE    E+     +P+     S+IQ   KA R D  +  L  + + G 
Sbjct: 346 IRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGY 405

Query: 329 TPDDRFCGCLLNVMTQTPK 347
            PD      L+N + +  K
Sbjct: 406 CPDMATHSMLINELCKADK 424


>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           macrostachya]
          Length = 437

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   +  N++TYN+++   G+     
Sbjct: 180 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHE 239

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 240 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 299

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++KS +N   D     + I I +  G++ EA  +F + ++AG 
Sbjct: 300 VAYERAGLVAHAKRLLHELKSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGE 354

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 355 VKDIMVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 401



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 1/202 (0%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   + 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           +TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M 
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 179

Query: 290 EAGFEPNLFVLTSLIQCYGKAQ 311
           + G EPN+    +L++ YG A+
Sbjct: 180 KMGIEPNVVSYNTLLRVYGDAE 201



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 26  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 85

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 86  NAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMRE 145

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 146 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 205

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N   +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 206 AIHLFXLMQ-RKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 264

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 265 SIWGKVGKLDRAAMLFQKLRSSGVEID 291



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM    LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   + 
Sbjct: 2   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    
Sbjct: 62  DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 164



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++G  G  D    +++++++ GV+ + + Y  ++    RA      K
Sbjct: 253 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAK 312

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    + ++  ++ + 
Sbjct: 313 RLLHELKSPDNIPR-DTAIHILAGAGRI---EEATYVFRQAIDAGEVKDIMVFERMIHLF 368

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+F+ M+      PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 369 SKYKKYANVVEVFDKMRGL-GYFPDS---NVIALVLNAYGKLHEFDKANGVYMEMQEVG 423



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 10/174 (5%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +          ++ +  Y T      RAG V  A     R  +E    D 
Sbjct: 268 GKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKSPDN 323

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
               T I +   AG  +    V+ +    G   +++ +  ++    + K+   V  ++ +
Sbjct: 324 IPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIMVFERMIHLFSKYKKYANVVEVFDK 383

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           M   G  P+ N  A +L AYG+    +    VY EM+E G   S  ++  +L++
Sbjct: 384 MRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVGCVFSDEVHFQMLSL 437


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 116/228 (50%), Gaps = 1/228 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A G+ +  +  +       +++++  Y   G+    L V++ +K  G++P ++
Sbjct: 388 KAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVV 447

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN+LL  + +A++    + +  EM  NG+ PN  +Y +L   Y RA   E    +++ M
Sbjct: 448 SYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRM 507

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K++ + + +  Y  LL  C   G    A E+F+ +  +   + +  T+ +M+   + +G+
Sbjct: 508 KKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDA-GLKHNRITYCTMLDGWARKGE 566

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           +S+A  +  +M + GF  +    TS I+   ++  T++V   L  + E
Sbjct: 567 LSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMRE 614



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 113/236 (47%), Gaps = 1/236 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+E    L  +   E ++ +   ++T++  +    + + CL+ +  +KA G+ P   
Sbjct: 248 QAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAA 307

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++    +A    +   I +EM  +G+SPN   YA ++  Y R         V+ +M
Sbjct: 308 TYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDM 367

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++  +  YN L+      G  D+A  + E+++++    P   T++S++      G 
Sbjct: 368 VSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQAN-RLLPTIETYTSILDGYVKGGH 426

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           + +A  +F+ +  AG  P +    SL+    KA++ ++    L+ +   G+ P++R
Sbjct: 427 IQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNER 482



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 104/212 (49%), Gaps = 5/212 (2%)

Query: 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
           AGN+   +N ++ +     KP +  Y  L+D   R       +  ++ M  + + PN + 
Sbjct: 113 AGNWHKIVNAFQVID----KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHI 168

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           Y SL+ AY  AR  E  ++   EM  +G+QL+  ++ ++++  A  G  + A   FE  K
Sbjct: 169 YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK 228

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
            +EN  P    ++S++      G +   EA+  +M E GF+ NL + T+++  + + +  
Sbjct: 229 -AENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDE 287

Query: 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +  +   +RL   G++P     GC++ + T+ 
Sbjct: 288 EKCLSFFHRLKACGLSPTAATYGCIVKLFTKA 319



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 113/234 (48%), Gaps = 5/234 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           T+AGN+  A  + +    +K  + PN   ++ ++  Y   G+F     V+E+M + G+KP
Sbjct: 317 TKAGNMAKALDILEEM--DKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKP 374

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++TYN L+    +A R  +   + + +  N L P   TY S+L  Y +  + +  L V+
Sbjct: 375 DIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVF 434

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             +K  G++  V  YN+LL+  A     + A  + ++M ++    P+  +++++    + 
Sbjct: 435 DRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLAN-GVVPNERSYTALTEGYAR 493

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
            G V +A  MF  M +     ++    +L++   K+      V    ++ + G+
Sbjct: 494 AGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGL 547



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 105/232 (45%), Gaps = 1/232 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A ++E A    +   ++  +++   F ++I  Y +AGN +   + +E+ KA  + P  I 
Sbjct: 179 ARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIV 238

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN+++    +A     V+ +  +M + G   N   Y ++L  +   R  E  LS +  +K
Sbjct: 239 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK 298

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G+  +   Y  ++ +    G   +A +I E+M       P+   ++ ++   +  G  
Sbjct: 299 ACGLSPTAATYGCIVKLFTKAGNMAKALDILEEM-DKHGVSPNKMIYAMIMDGYARGGDF 357

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + A  ++ +M+ AG +P++     L+  + KA R D  +  L  +    + P
Sbjct: 358 TAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLP 409



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 2/179 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG+VE AFG++ R + E   ID  A+  L+K    +G     + V++++   G+K N 
Sbjct: 492 ARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNR 551

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITY  +LD   R     + + + K+M  +G   +   Y S ++A  R+   E+       
Sbjct: 552 ITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAV 611

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSC 274
           M+EK ++++   Y TL+         D+A   +E  K+S   Q DS   + +++ + SC
Sbjct: 612 MREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKAS-GLQLDSALSNCLLSGLISC 669



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 106/235 (45%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G+   A   ++  R    + + + +++LI  Y  A + +G +   EEM + G++ N 
Sbjct: 142 ARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNE 201

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             + +++     A      +  +++     L P    Y S+++AY +A   E   ++  +
Sbjct: 202 AVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQ 261

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+E+G Q ++ LY T+L   A++   ++    F  +K+     P + T+  ++ + +  G
Sbjct: 262 MEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKAC-GLSPTAATYGCIVKLFTKAG 320

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +++A  +  EM + G  PN  +   ++  Y +        +    +   G+ PD
Sbjct: 321 NMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPD 375



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN  +++ L + Y  AG+ +    +++ MK   +  +++ Y  LL    ++    +  
Sbjct: 477 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAV 536

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +++++TD GL  N  TY ++L  + R         + ++M++ G  L    Y + +  C
Sbjct: 537 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKAC 596

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
              G T+E  E    M+  +  + ++ T++++I
Sbjct: 597 FRSGDTEEVTETLAVMR-EKKLEVNARTYTTLI 628


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 3/214 (1%)

Query: 120 DPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DP+  +F++ I   G    ++  + +  EM   G+ PN+ITYN+ ++  GR+ R  +   
Sbjct: 424 DPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMG 483

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +++EM   GLSPN  TY S++ A  +    E  + +   M  +G+   V  YN+ +  C 
Sbjct: 484 LFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACG 543

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
                + A ++ + M +    +PD  +++S +T C+  G+  EA  +  +M   G  PN 
Sbjct: 544 KGEQWELALQLLKGMPT-RGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNT 602

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               + I   GK ++ D  VR L  +   G TP+
Sbjct: 603 VSYGAAIHACGKGEQWDVAVRILKEMQTHGATPN 636



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 3/213 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++S++I   G    +   +++ E+M+  GV PN+I+YN+ +D   +  R  +   + 
Sbjct: 286 DVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLL 345

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EMT  GL P   +Y S   A        + L + +EM  +G+  +   YN+ L  CA  
Sbjct: 346 REMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKG 405

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-AEAMFNEMLEAGFEPNLF 298
           G  ++A ++   M S+    PD  +F+S I  C  RG+  E A  +  EM  AG  PN+ 
Sbjct: 406 GQWEKAVKLLRGM-STVGSDPDIISFNSAIDACG-RGQQWETAVELLREMPTAGLTPNVI 463

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              S I+  G++ R  + +     +P  G++P+
Sbjct: 464 TYNSAIEACGRSARWQEAMGLFREMPTRGLSPN 496



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 105/208 (50%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +I      G +   +++  +M    +  ++I+Y++++   GR +R  +   + ++M 
Sbjct: 255 YNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMR 314

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+SPN  +Y S + A  +    ++ L + REM   G+  +V  YN+  A CA  G   
Sbjct: 315 TQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWV 374

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA E+ ++M  ++   P++ +++S +  C+  G+  +A  +   M   G +P++    S 
Sbjct: 375 EALELLKEMP-AQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSA 433

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I   G+ Q+ +  V  L  +P  G+TP+
Sbjct: 434 IDACGRGQQWETAVELLREMPTAGLTPN 461



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 104/216 (48%), Gaps = 5/216 (2%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   +++ I+  G +  +   + ++ EM   G+ PN++TYN+++D   + ++ W++ 
Sbjct: 458 LTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQ-WELA 516

Query: 177 T-IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             +   M   G++P+  +Y S + A G+    E  L + + M  +G +  +  YN+ +  
Sbjct: 517 VQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTA 576

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           CA  G   EA  + +DM ++    P++ ++ + I  C    +   A  +  EM   G  P
Sbjct: 577 CAKSGRWREALGLLKDM-ATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATP 635

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           NL   ++ I    K  R  + V  L  L   G+TPD
Sbjct: 636 NLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPD 671



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 130/323 (40%), Gaps = 44/323 (13%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKT 177
           D   +++ I      G +   +++  +M A   G+ P+++TYN+ +       R  +   
Sbjct: 144 DVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMD 203

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + ++M   G+ PN  TY S + A  + R  E+ + +  E+ E+G   S   YN ++  CA
Sbjct: 204 LLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACA 263

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G   EA ++   M +++    D  ++SS+I  C    +  EA  +  +M   G  PN+
Sbjct: 264 KGGRWLEAMDLLGQMLTND-IPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNV 322

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-----DDRFCGCLLNVMTQTPKEELGK 352
               S I    K  R  + +  L  +  +G+ P     +     C +N          G+
Sbjct: 323 ISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVN----------GR 372

Query: 353 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 412
            VE +E            LL+E   +G          N+IS        N  +D C    
Sbjct: 373 WVEALE------------LLKEMPAQGIAP-------NTISY-------NSALDACAKGG 406

Query: 413 LLENACKLLELGLTLEVYTDIQS 435
             E A KLL    T+    DI S
Sbjct: 407 QWEKAVKLLRGMSTVGSDPDIIS 429



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 3/173 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LL+  GR  R         E   +G S +  +Y   + A    R     + + REM  +G
Sbjct: 83  LLEAKGRDWR--TALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEG 140

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-SENCQPDSWTFSSMITICSCRGKVSE 280
           +   V  YN+ +A C+  G   EA ++   M + +E   PD  T++S I  CS  G+  E
Sbjct: 141 VTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKE 200

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           A  +  +M+  G  PNL    S I    K +R ++ +  L  + E G  P  R
Sbjct: 201 AMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTR 253



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 78/151 (51%), Gaps = 1/151 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++++ I+  G    ++  L + + M   G KP++I+YN+ +    ++ R  +   + 
Sbjct: 531 DVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLL 590

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           K+M   GL+PN  +Y + + A G+    +  + + +EM+  G   ++  Y+  +  CA  
Sbjct: 591 KDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQ 650

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           G   EA ++  D++  +   PD+ T+ ++I+
Sbjct: 651 GRWKEAVDLLTDLR-RQGLTPDAQTYLTVIS 680



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L   +E K  G   +  +YN  +      ++      + +EM   G++P+  TY S + A
Sbjct: 95  LAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAA 154

Query: 201 YGRARYGEDTLSVYREM--KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             +    ++ + +  +M    +G+   V  YN+ +A C++ G   EA ++ E M  ++  
Sbjct: 155 CSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQM-VAQGV 213

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
            P+  T++S I  C+   +  EA  +  E++E GF P+      +I    K  R
Sbjct: 214 PPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGR 267



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN  ++   I   G    +D  + + +EM+  G  PN+ITY+  +D   +  R  +  
Sbjct: 598 LTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQGRWKEAV 657

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGR 203
            +  ++   GL+P+  TY +++ A+ R
Sbjct: 658 DLLTDLRRQGLTPDAQTYLTVISAFQR 684


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 116/230 (50%), Gaps = 1/230 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D     Y EM   G+ PN++TY++++  + +A+   +   + 
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ PN  TY S++  Y  +   ++ +   ++M   G++  V  YN+L+      
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++F+ M +    +P+  T+ +++   + +G + E   + + M+  G  PN +V
Sbjct: 318 GRCTEARKMFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            + LI  Y K  + D  +   +++ + G+ PD    G ++ ++ ++ + E
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 1/190 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+D       + D   +STLI  Y  AG  D    +   M ++G+KP+ +TYN L++   
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC 560

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +  R      +++EM  +G+SP+  TY  +L+   + R       +Y  + E G QL ++
Sbjct: 561 KISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELS 620

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YN +L        TDEA  +F+++  ++  Q ++ TF+ MI      G+  EA+ +F  
Sbjct: 621 TYNIILHGLCKNNLTDEALRMFQNLCLTD-LQLETRTFNIMIGALLKVGRNDEAKDLFAA 679

Query: 288 MLEAGFEPNL 297
           +   G  P++
Sbjct: 680 LSANGLVPDV 689



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 1/237 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + +   + TL++ Y T G       + + M   G+ P
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 372

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N   ++ L+    +  +  Q   ++ +M   GL+P+  TY +++    ++   ED +  +
Sbjct: 373 NHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYF 432

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++ +     +YN+L+         D+A E+  +M     C  D+  F+S+I     
Sbjct: 433 EQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL-DTIFFNSIIDSHCK 491

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+V E+E +F+ M+  G +P++   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 492 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 4/221 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG ++ A  L     +   + D   ++TLI  Y      +  L ++ EM++ GV P++IT
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +L  + + +R    K +Y  +T++G     +TY  +L    +    ++ L +++ + 
Sbjct: 587 YNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              +QL    +N ++     VG  DEA ++F  + S+    PD  T+S M      +G +
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAAL-SANGLVPDVRTYSLMAENLIEQGLL 705

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            E + +F  M E G   N  +L S+++   K  +  D+ RA
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVR---KLLQRGDITRA 743



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 144 YEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           Y  M   G   V PN+ TY  L+ +   A R          +   G   +   +  +L+ 
Sbjct: 76  YNRMARAGADEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKG 135

Query: 201 YGRARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENC 258
               +   D +  V R M + G   +V  YN LL    D   + EA E+ + M     +C
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDC 195

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            PD  +++++I      G + +A   ++EML+ G  PN+   +S+I    KAQ  D  + 
Sbjct: 196 PPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAME 255

Query: 319 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEELGKL 353
            L  + + G+ P+ R    +++    +  PKE +G L
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 103/226 (45%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G VE A   +++  +E+       +++LI        +D    +  EM   G+  + I
Sbjct: 421 KSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTI 480

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N+++D+  +  R  + + ++  M   G+ P+  TY++L+  Y  A   ++   +   M
Sbjct: 481 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 540

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              GM+     YNTL+     +   ++A  +F +M+SS    PD  T++ ++       +
Sbjct: 541 VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESS-GVSPDIITYNIILQGLFQTRR 599

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            + A+ ++  + E+G +  L     ++    K   TD+ +R    L
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645


>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 841

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 113/227 (49%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +Y+  +  +  +D + +  +I     +G  D    +++EMK   ++P+   +++L+D
Sbjct: 307 AFEIYESMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVD 366

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +MG++ R      IY EM   GL  + + Y SL+ +Y +A   +  L ++ EMK+ G + 
Sbjct: 367 SMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRP 426

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +  LY  ++   A  G  D A  IF+DM  +    P   T+S ++ + +  G+V  A  +
Sbjct: 427 NYGLYTLIIESHAKSGKLDIATSIFKDMDKA-GFLPTPSTYSCLLEMHAASGQVDSAMKL 485

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +N M  AG +P L   T+L+      +  D   + L  +  +G + D
Sbjct: 486 YNSMTNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVD 532



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/457 (21%), Positives = 199/457 (43%), Gaps = 47/457 (10%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G +++AF L+   +  K R     FS+L+   G +G  D  + +Y EM+  G++ + 
Sbjct: 334 AKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSA 393

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             Y +L+++  +A +      ++ EM   G  PN+  Y  ++ ++ ++   +   S++++
Sbjct: 394 SMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKD 453

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G   + + Y+ LL M A  G  D A +++  M ++   +P   T+++++T+ + + 
Sbjct: 454 MDKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSM-TNAGLKPGLSTYTALLTLLASKK 512

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD---- 332
            V  A  +  EM   GF  ++   + ++  Y K    D  +R L+ +   GI  ++    
Sbjct: 513 LVDVAAKILLEMKAMGFSVDVSA-SDVLMVYIKDGSVDLALRWLSFMGSSGIRTNNFIIR 571

Query: 333 -RFCGCLLNVMTQTPKEELGKLVECVEKSN-----SKLGYVVKLLLEEQD-----IEGDF 381
             F  C+   + ++ K  L   V    K +     S L  +V+   E+ +     I G  
Sbjct: 572 QLFESCMKKGLYESAKPLLETYVNSAAKVDLILYTSILANLVRCQEEQHERHLMSILGAT 631

Query: 382 KKEA----------------------TELFNSISKDVK----KAYCNCLIDLCVNLNLLE 415
           + +A                       E F  I  D++    K + N L++  V +  + 
Sbjct: 632 RHKAHAFMCGLFTGPEQRQQPVLFFVREFFQGIDYDLEEGAAKYFVNVLLNYLVLMGQIN 691

Query: 416 NACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 474
            A  + ++    +++   I       WSL +++LS+GAAL A+   ++   K +      
Sbjct: 692 RARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVV 751

Query: 475 PPLLGINTGHGKHKYSDKGLASV---FESHLKELNAP 508
           P  + + TG        + L+SV   FE     L AP
Sbjct: 752 PRRIKLVTGPTLKIVVAQMLSSVESPFEVSKVVLRAP 788



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 173/396 (43%), Gaps = 27/396 (6%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A  +E++F  + + ++   +ID   ++ LI  +   G       +YE M+A     + 
Sbjct: 264 AKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQAAQCSLDA 323

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  ++ ++ ++ R      +++EM +  + P++  ++SL+ + G++   + ++ +Y E
Sbjct: 324 STYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYME 383

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+  G++ S ++Y +L+      G  D A  ++++MK +   +P+   ++ +I   +  G
Sbjct: 384 MQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKA-GFRPNYGLYTLIIESHAKSG 442

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K+  A ++F +M +AGF P     + L++ +  + + D  ++  N +   G+ P      
Sbjct: 443 KLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLSTYT 502

Query: 337 CLLNVMTQTPKEELGKLVECVEK---SNSKLGYVVK------LLLEEQDIEGDFKKEATE 387
            LL ++         KLV+   K       +G+ V       L++  +D   D       
Sbjct: 503 ALLTLLASK------KLVDVAAKILLEMKAMGFSVDVSASDVLMVYIKDGSVDLALRWLS 556

Query: 388 LFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE------LGLTLEVYTDIQSR----S 437
              S            L + C+   L E+A  LLE        + L +YT I +      
Sbjct: 557 FMGSSGIRTNNFIIRQLFESCMKKGLYESAKPLLETYVNSAAKVDLILYTSILANLVRCQ 616

Query: 438 PTQWSLHLKSLSLGAALTALHIWINDLSKALESGEE 473
             Q   HL S+ LGA     H ++  L    E  ++
Sbjct: 617 EEQHERHLMSI-LGATRHKAHAFMCGLFTGPEQRQQ 651



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 149/338 (44%), Gaps = 21/338 (6%)

Query: 108 LYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEM---KAIGVKPNMITYNNLL 163
           L+  A+ + W + D   ++ L        +FDG  ++++EM    + G   ++  YN ++
Sbjct: 201 LFKWAKRQTWYVVDDECYALLFDGLNKIRDFDGIQSLFDEMVQDSSKGGISSVYAYNRVI 260

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
             + +A++       +K++ D+G   +  TY +L+ ++           +Y  M+     
Sbjct: 261 QHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQAAQCS 320

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           L  + Y  ++   A  G  D AF++F++MK     +P    FSS++      G++  +  
Sbjct: 321 LDASTYELMIPSLAKSGRLDVAFKLFQEMK-ERKIRPSFGIFSSLVDSMGKSGRLDTSMK 379

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           ++ EM   G   +  +  SLI+ Y KA + D  +R  + + + G  P+      ++    
Sbjct: 380 IYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHA 439

Query: 344 QTPKEELGKLVECVEKSNSKLGYV-----VKLLLEEQDIEGDFKKEATELFNSISKDVKK 398
           ++ K ++      + K   K G++        LLE     G     A +L+NS++    K
Sbjct: 440 KSGKLDIA---TSIFKDMDKAGFLPTPSTYSCLLEMHAASGQV-DSAMKLYNSMTNAGLK 495

Query: 399 ---AYCNCLIDLCVNLNLLENACKLL----ELGLTLEV 429
              +    L+ L  +  L++ A K+L     +G +++V
Sbjct: 496 PGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVDV 533


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 150/323 (46%), Gaps = 24/323 (7%)

Query: 78  IWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAG 135
           IW++ +  RA + +   Y+ +                  WR  P+   ++ L+ ++G AG
Sbjct: 94  IWLHARHQRADQARGLFYEMKV-----------------WRCKPDVETYNALMNVHGRAG 136

Query: 136 NFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
            +   L ++++M      + P+  +YNNL++  G + + ++   I K MTDNG+ P+  T
Sbjct: 137 QWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMT 196

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           Y  +L A+         ++ Y  +  K + L    +N +L     +G  ++A  +F++M+
Sbjct: 197 YNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMR 256

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
               C+PD  TF++++ + +  G++++A+  F+ M+  G  P +    +L+  Y      
Sbjct: 257 KMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMY 316

Query: 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL--L 371
            + ++ +  L +    PD      LLN   +    E  + V  + K  S+   +V    L
Sbjct: 317 TEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGL 376

Query: 372 LEEQDIEGDFKKEATELFNSISK 394
           ++     G +++ A EL + +++
Sbjct: 377 MDAYASAGKYER-ARELLHDMAE 398



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 42/285 (14%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           K+  D  ++S+L+  +G AG  +    V++ MK    KPN++T+N L+D    A +  + 
Sbjct: 330 KFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERA 389

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + +  +M +  + PN  T  SL  A  RAR  E    V+ E K + + L+V  +N  +  
Sbjct: 390 RELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITA 449

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTF------------------------------ 265
             + G  DEA  + E M+  +N +P+  TF                              
Sbjct: 450 YIEAGQFDEAKALLEVME-EQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLGIPL 508

Query: 266 -----SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
                S++I   +  G  +EA  +F++M +AG + N+   TSL+  Y   +  DD   A 
Sbjct: 509 TVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAY---RMYDDAQLAC 565

Query: 321 NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 365
             +   GITPD    G L   + +  + E  K+++ +EKS+   G
Sbjct: 566 EEMVAAGITPDSIAFGTLFVALNKANRSE--KVLQ-IEKSSRARG 607



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 96/236 (40%), Gaps = 39/236 (16%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RA   E    ++  A+  +  ++  AF+  I  Y  AG FD    + E M+   ++PN 
Sbjct: 416 ARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNG 475

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+  L++  G      + +T+Y +M D G+       ++L+ A+ +     +  +++ +
Sbjct: 476 VTFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDD 535

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G + +V  Y +L+           A+ +++D                         
Sbjct: 536 MRKAGCKANVVTYTSLMI----------AYRMYDD------------------------- 560

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
               A+    EM+ AG  P+     +L     KA R++ V++        GI  DD
Sbjct: 561 ----AQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDD 612



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-IGVKPN 155
           +R  + E A  LY+  +  + R+       L+   G +G  D    V+ E++  IG  P 
Sbjct: 623 SRLKDWETALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKVFLELQQQIGFVPT 682

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +  YN L+D+  R  +  +   +   +  + L PNW TY  +L    +    E  L +Y 
Sbjct: 683 LQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYLEIYG 742

Query: 216 EMKEKGMQ-------LSVTLYNTL 232
           E+  +GM+       +SVT Y +L
Sbjct: 743 EVLAQGMEPDYNILKISVTAYTSL 766



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 3/248 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D  R    + +   +++L+  Y     +D      EEM A G+ P+ I +  L   + 
Sbjct: 532 IFDDMRKAGCKANVVTYTSLMIAYRM---YDDAQLACEEMVAAGITPDSIAFGTLFVALN 588

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +A R  +V  I K     G+  +   Y   L A  R +  E  L +Y  MK++ ++L+ T
Sbjct: 589 KANRSEKVLQIEKSSRARGILFDDVAYTETLLACSRLKDWETALFLYEGMKKRRLRLTNT 648

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +   LL+     G  D   ++F +++      P    ++ +I   S   K  +   +   
Sbjct: 649 MVINLLSAVGRSGKLDRLHKVFLELQQQIGFVPTLQMYNILIDSYSRGLKWRKCLEVLGC 708

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           + +   EPN      ++ C  + +  +  +     +   G+ PD       +   T    
Sbjct: 709 IKKDILEPNWKTYEPILSCLSQLELWETYLEIYGEVLAQGMEPDYNILKISVTAYTSLGM 768

Query: 348 EELGKLVE 355
           EE   L E
Sbjct: 769 EEEASLTE 776


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 119/230 (51%), Gaps = 4/230 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A  +++R + ++ +     ++ LI LYG A      L V+ EM++   KPN+ 
Sbjct: 180 KGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNIC 239

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+  L++   R     + + I++++ + GL P+   Y +L+ AY RA +      ++  M
Sbjct: 240 TFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLM 299

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN ++      G  ++A  +FE MK      P   +   +++  S  GK
Sbjct: 300 QHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRL-GITPTMKSHMLLLSAYSRAGK 358

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLP 324
           V++ E + N+M ++G +P+ FVL S++  YG+    ++ ++V+ A+ + P
Sbjct: 359 VAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGP 408



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 7/270 (2%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI 150
           K+Y T +G +E A  ++   R  K+   P+A  ++  I      G+    + ++E MK  
Sbjct: 141 KAYCT-SGLLEKAEAVFAEMR--KYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRD 197

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
             +P+  TY  L++  G+A + +    ++ EM      PN  T+ +L+ A+ R    E  
Sbjct: 198 RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKA 257

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             ++ +++E G++  V  YN L+   +  G+   A EIF  M+    C+PD  +++ M+ 
Sbjct: 258 EEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM-GCEPDRASYNIMVD 316

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G   +A+A+F  M   G  P +     L+  Y +A +       +N++ + GI P
Sbjct: 317 AYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 376

Query: 331 DDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
           D      +LN+  +  + E++ +++  +EK
Sbjct: 377 DTFVLNSMLNLYGRLGQFEKMEEVLTAMEK 406



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 114/237 (48%), Gaps = 7/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A    MA  ++   R++K + +   F+ L+  +   G  +    ++E+++  G++P++ 
Sbjct: 215 KASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVY 274

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L++   RA  P+    I+  M   G  P+  +Y  ++ AYGRA   ED  +V+  M
Sbjct: 275 AYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVM 334

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+  ++  +  LL+  +  G   +  EI   M  S   +PD++  +SM+ +    G+
Sbjct: 335 KRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKS-GIKPDTFVLNSMLNLYGRLGQ 393

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLPELGITPD 331
             + E +   M +  +  ++     LI  YG+A    R +++ R+   LP   + PD
Sbjct: 394 FEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRS---LPARNLIPD 447



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 114/240 (47%), Gaps = 6/240 (2%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L+K Y T+G  +    V+ EM+  G  P+ + YN  +D + +     +   I++ 
Sbjct: 134 DTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFER 193

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +   P+  TY  L+  YG+A      L V+ EM+ +  + ++  +  L+   A  G 
Sbjct: 194 MKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGL 253

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A EIFE ++ +   +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 254 CEKAEEIFEQLQEA-GLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYN 312

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
            ++  YG+A   +D       +  LGITP  +    LL+  ++      GK+ +C E  N
Sbjct: 313 IMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRA-----GKVAKCEEIVN 367



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++I YN L+D  G+     + ++ Y E+ +    P  +TYA LL+AY  +   E   +V
Sbjct: 96  PDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAV 155

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + EM++ G   S  +YN  +      G T +A EIFE MK  + CQP + T++ +I +  
Sbjct: 156 FAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK-RDRCQPSTATYTMLINLYG 214

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              K   A  +F+EM     +PN+   T+L+  + +    +       +L E G+ PD
Sbjct: 215 KASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPD 272



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 1/200 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG    A  ++   ++     D  +++ ++  YG AG  +    V+E MK +G+ P M
Sbjct: 284 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTM 343

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    RA +  + + I  +M  +G+ P+     S+L  YGR    E    V   
Sbjct: 344 KSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTA 403

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++      ++ YN L+ +    G+     E+F  +  + N  PD  T++S I   S R 
Sbjct: 404 MEKGPYPADISTYNILINIYGRAGFFARMEELFRSLP-ARNLIPDVVTWTSRIGAYSRRK 462

Query: 277 KVSEAEAMFNEMLEAGFEPN 296
           + +    +F EM++AG  P+
Sbjct: 463 QYNRCLEVFEEMIDAGCYPD 482


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 141/295 (47%), Gaps = 11/295 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E AF    ++R+    +    +++L+   G  G+  G + ++ +MKA G+  N +
Sbjct: 217 KTGQLERAFDFVGKSRSFTNEV---TYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNEL 273

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++ +G A R   V  +Y EM DN +  +  T  ++L    +A   E    ++++M
Sbjct: 274 TYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDM 333

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K KG+      YN L+      G  D A  +  +M+ +  C P+  T++++I+       
Sbjct: 334 KFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEEN-GCAPNIITYNTLISSYGKWSN 392

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +S A  +F EM E G  PN+   +SLI+ +GKA RTD  +     +   G  P+      
Sbjct: 393 LSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNL 452

Query: 338 LLNVMTQTPKEELGKLVECVEK---SNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
           L++ + +  +   G  +E + +   +  ++G V K LL    I   + +EA   F
Sbjct: 453 LIDCLIRAGR--FGAAMEYLREMRDAGCQMGKVTKSLLVR--IPPQYMEEAQSFF 503



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 4/219 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+V+    +Y +    K+  D   F+ LI     A   +   NV+ +M  + V P++ 
Sbjct: 77  KGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVY 136

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+ ++G   R   V  +++ MT  G  PN  TY S++ A+G A   ++   ++++M
Sbjct: 137 TYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQM 196

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG+Q     YN L+      G  + AF+     +S  N      T++S+++    +G 
Sbjct: 197 VQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTN----EVTYNSLLSSLGRKGD 252

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           +     +F +M   G   N      LI+  G A R +DV
Sbjct: 253 IQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDV 291



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 3/191 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG VE AF L+   + +    D   ++ LI   G AG  D    +  EM+  G  PN+
Sbjct: 318 SKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNI 377

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITYN L+ + G+         ++ EM + G++PN  +Y+SL+  +G+A   +  +S++RE
Sbjct: 378 ITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFRE 437

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK +G   +   YN L+      G    A E   +M+ +  CQ    T S ++ I     
Sbjct: 438 MKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDA-GCQMGKVTKSLLVRIPP--Q 494

Query: 277 KVSEAEAMFNE 287
            + EA++ F E
Sbjct: 495 YMEEAQSFFQE 505



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 97/202 (48%), Gaps = 1/202 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L +  + ++ ++D   F+TLI +YG A   +  L         G +P   TY++++    
Sbjct: 17  LVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFM 76

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +         +YK+M      P+  T+  L+ +  +A   E+  +V+ +M +  +   V 
Sbjct: 77  KGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVY 136

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  L+     +G  D   ++FE M +++ CQP+ +T+ S++      G+V EA  +F +
Sbjct: 137 TYTILIRSLGTIGRIDAVMKLFESM-TAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQ 195

Query: 288 MLEAGFEPNLFVLTSLIQCYGK 309
           M++ G +P+      LI  +GK
Sbjct: 196 MVQKGLQPDAVTYNILIDAFGK 217



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 3/236 (1%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
           ++ L G A  +D    + E M+    K +   +N L+   G A    +        T  G
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEG 60

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
             P   TY+S+++ + +    ++ L +Y++M +       T +N L+   A     +EA 
Sbjct: 61  GRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEAC 120

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
            +F DM    N  PD +T++ +I      G++     +F  M   G +PNLF   S++  
Sbjct: 121 NVFGDM-FKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHA 179

Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 362
           +G A R D+      ++ + G+ PD      L++   +T + E  +  + V KS S
Sbjct: 180 FGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLE--RAFDFVGKSRS 233



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 104/218 (47%), Gaps = 4/218 (1%)

Query: 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           E  R     +S++I+++   G+    L +Y++M      P+  T+N L+D++ +A +  +
Sbjct: 59  EGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEE 118

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
              ++ +M    +SP+  TY  L+R+ G     +  + ++  M  +G Q ++  Y++++ 
Sbjct: 119 ACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMH 178

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                G  DEA +IF+ M   +  QPD+ T++ +I      GK  + E  F+ + ++   
Sbjct: 179 AFGSAGRVDEACDIFQQM-VQKGLQPDAVTYNILI---DAFGKTGQLERAFDFVGKSRSF 234

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            N     SL+   G+      ++    ++   G+  ++
Sbjct: 235 TNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNE 272


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 119/243 (48%), Gaps = 1/243 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+++ A+ + +    + +  D   ++TL+  Y   GNF   L ++ EM   GV P+++
Sbjct: 296 REGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVV 355

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+++M +A+   +    + +M   GL PN  TY +L+  + R     +   +  EM
Sbjct: 356 TYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 415

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G   SV  YN  +     +   +EA  + ++M   +   PD  ++S++I+    +G+
Sbjct: 416 TESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEM-VEKGLAPDVVSYSTIISGFCRKGE 474

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  M  EM+E G  P+    +SLIQ   + +R  +       + ++G+ PD+     
Sbjct: 475 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 534

Query: 338 LLN 340
           L+N
Sbjct: 535 LIN 537



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 108/216 (50%), Gaps = 9/216 (4%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV 175
           PN   ++TLI  Y   G  D    + + M + G++PN+I+YN +++ +   G  K  W+ 
Sbjct: 247 PNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWE- 305

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             I +EM   G +P+  TY +LL  Y +       L ++ EM   G+  SV  Y  L+  
Sbjct: 306 --ILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 363

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
                  + A E F+ M+     +P+  T++++I   S +G ++EA  + NEM E+GF P
Sbjct: 364 MCKARNLNRAMEFFDQMR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 422

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++    + I  +   +R ++ +  +  + E G+ PD
Sbjct: 423 SVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 458



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 13/293 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ AFGL     ++  + +  +++ +I      G+      + EEM   G  P+ +
Sbjct: 261 KMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEV 320

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL+   +     Q   I+ EM  NG+SP+  TY +L+ +  +AR     +  + +M
Sbjct: 321 TYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM 380

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G++ +   Y TL+   +  G  +EA+ I  +M  S    P   T+++ I       +
Sbjct: 381 RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTES-GFSPSVVTYNAFIHGHCVLER 439

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +  EM+E G  P++   +++I  + +    D   +    + E G++PD      
Sbjct: 440 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 499

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLG-------YVVKLLLEEQDIEGDFKK 383
           L+  +      E+ +L E  + S   L        +    L+    +EGD  K
Sbjct: 500 LIQGLC-----EMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNK 547



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A N+  A   +D+ R    R +   ++TLI  +   G  +    +  EM   G  P+++
Sbjct: 366 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 425

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN  +      +R  +   + +EM + GL+P+  +Y++++  + R    +    + +EM
Sbjct: 426 TYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM 485

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+      Y++L+    ++    EA ++ ++M       PD +T++++I      G 
Sbjct: 486 VEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM-GLPPDEFTYTTLINAYCVEGD 544

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +++A  + +EM+  GF P+    + LI    K  RT +  R L +L      P D
Sbjct: 545 LNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSD 599



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 3/224 (1%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT--IYK 180
            F  ++K Y      D  +N     K+ G  P +++YN++LD + R++   ++    +Y+
Sbjct: 144 VFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYR 203

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM  + +SPN  TY  L+R +      +  L  + EM+  G   +V  YNTL+     +G
Sbjct: 204 EMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG 263

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             DEAF + + M SS+  QP+  +++ +I      G + EA  +  EM   GF P+    
Sbjct: 264 RIDEAFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTY 322

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            +L+  Y K       +     +   G++P       L+N M +
Sbjct: 323 NTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 366



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 53/259 (20%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +E A G+      +    D  ++ST+I  +   G  D    + +EM   GV P+ +TY++
Sbjct: 440 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 499

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+  +   +R  +   + +EM D GL P+  TY +L+ AY         L ++ EM  KG
Sbjct: 500 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKG 559

Query: 222 -----MQLSVTL------------------------------YNTLLAMCADV------- 239
                +  SV +                              Y+TL+  C+++       
Sbjct: 560 FLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVA 619

Query: 240 --------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLE 290
                   G   EA  +FE M    N +P    ++ +I    CRG  + +A  ++ EM+ 
Sbjct: 620 LIKGFCMKGLMHEADRVFESM-VERNHKPGEAVYNVIIH-GHCRGGNLPKAFNLYKEMIH 677

Query: 291 AGFEPNLFVLTSLIQCYGK 309
           +GF P+   + +LI+   K
Sbjct: 678 SGFVPHTVTVITLIKALFK 696


>gi|302765062|ref|XP_002965952.1| hypothetical protein SELMODRAFT_84012 [Selaginella moellendorffii]
 gi|300166766|gb|EFJ33372.1| hypothetical protein SELMODRAFT_84012 [Selaginella moellendorffii]
          Length = 533

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 20/254 (7%)

Query: 96  DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +  AGN++    LY + +      D   ++ + K    + N    L +YEE+KA  +K N
Sbjct: 255 NAHAGNIQHVLRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKEIKMN 314

Query: 156 MITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++Y  L+  + G AK   +V  +  +M   G+ PN  T+ SL+ A  +    E TL VY
Sbjct: 315 VLSYGTLIQVIFGEAKMLDRVFQMKHDMDSTGIVPNVVTWTSLVGACSKGALVEKTLQVY 374

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----------------SEN 257
           ++M + G   +   YN LL+ C D G +D+A ++F + K+                 SE 
Sbjct: 375 QDMVQAGCTPNAFTYNFLLSACVDGGQSDKAHKLFREWKTSGRILAGIEVQDESAIFSEW 434

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            +PDS  +++M+  C    K  +AEA+  EM+ +G  P+      LI  YG        V
Sbjct: 435 VRPDSVAYNTMMRACDKLPK--QAEAVMQEMVSSGLRPDKRSWCILINSYGCNGDKQGAV 492

Query: 318 RALNRLPELGITPD 331
           +A  R+   GI  D
Sbjct: 493 QAFQRMGRSGIIAD 506



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 91/198 (45%), Gaps = 4/198 (2%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           G+      V++ +++ GV+P+M +Y  L+D  GR     +   I++ +   G   N    
Sbjct: 191 GDLQSVFQVFQALESTGVRPDMYSYCILIDACGRCGDAEKATAIFEGLLKAGTVLNVYVC 250

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
            S++ A+  A   +  L +YR+M+  G+   VT YN +   C        A  ++E++K+
Sbjct: 251 NSMMNAH--AGNIQHVLRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKA 308

Query: 255 SENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
            E  + +  ++ ++I +     K +     M ++M   G  PN+   TSL+    K    
Sbjct: 309 KE-IKMNVLSYGTLIQVIFGEAKMLDRVFQMKHDMDSTGIVPNVVTWTSLVGACSKGALV 367

Query: 314 DDVVRALNRLPELGITPD 331
           +  ++    + + G TP+
Sbjct: 368 EKTLQVYQDMVQAGCTPN 385



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N ++    D G     F++F+ ++S+   +PD +++  +I  C   G   +A A+F  +L
Sbjct: 181 NMIMQKFRDQGDLQSVFQVFQALEST-GVRPDMYSYCILIDACGRCGDAEKATAIFEGLL 239

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +AG   N++V  S++  +  A     V+R   ++   GI  D
Sbjct: 240 KAGTVLNVYVCNSMMNAH--AGNIQHVLRLYRQMQGSGIAAD 279



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRA--KRPWQVKTIYKEM 182
           L + + T+G     + V +E       V+P+ + YN    TM RA  K P Q + + +EM
Sbjct: 408 LFREWKTSGRILAGIEVQDESAIFSEWVRPDSVAYN----TMMRACDKLPKQAEAVMQEM 463

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             +GL P+  ++  L+ +YG     +  +  ++ M   G+   V  Y  ++
Sbjct: 464 VSSGLRPDKRSWCILINSYGCNGDKQGAVQAFQRMGRSGIIADVVAYTAII 514


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 129/270 (47%), Gaps = 9/270 (3%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPN 122
           + G   ++Y  ++    R  +  + SYDT      + G ++MA  +++   N     D  
Sbjct: 243 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 302

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A+STLI     AG  D    ++E+M+    +P+++T+  L+D + +  R  + + + + M
Sbjct: 303 AYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 362

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGY 241
            D   +PN  TY+SL+    +     D   V++ M  +G++ +V  YN+L+   C   G 
Sbjct: 363 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG- 421

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D A  + E+M ++  C PD  T++++I      G+  EA  +F +M      P++   +
Sbjct: 422 VDSALLLMEEMTAT-GCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYS 480

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            LI  + K +R D      + + +  + PD
Sbjct: 481 CLIGGFCKLERIDMARTLFDDMLKQAVLPD 510



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 7/234 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++MA  L+D    +    D   FSTL++ Y  AG  D    + EEM A    P++ TY +
Sbjct: 492 IDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTS 551

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+D   +  R  + + + K M   G  PN  TY +L+ A+ RA        +  EM   G
Sbjct: 552 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNG 611

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +Q +V  Y +L+      G  +EA +I E ++  ENC+ D + +  M+      G++S A
Sbjct: 612 VQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAA 671

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQ--CYGKAQRTDDVVRALNRLPELGITPDDR 333
             +   + ++G  P   +  +LI+  C GK     ++ +A+  L E+ ++   R
Sbjct: 672 LELLEAIKQSGTPPRHDIYVALIRGLCQGK-----ELGKAMEVLEEMTLSRKSR 720



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 111/215 (51%), Gaps = 3/215 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN   +++LI  +      D  L + EEM A G  P++ITYN L+D + +  R  +  
Sbjct: 402 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 461

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++ +M     +P+  TY+ L+  + +    +   +++ +M ++ +   V  ++TL+   
Sbjct: 462 RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGY 521

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            + G  D+A  + E+M +S+ C PD +T++S++      G++ EA  +   M + G +PN
Sbjct: 522 CNAGLVDDAERLLEEMVASD-CSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 580

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   T+LI  + +A +     R L  +   G+ P+
Sbjct: 581 VVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPN 615



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 96/188 (51%), Gaps = 1/188 (0%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           + +MK  G  PN  TYN L++   +  +  +   + KEM ++GL+PN  TY++++  + R
Sbjct: 149 FAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR 208

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
               +    ++R+M E G   ++  YNTLL+     G  DEA+E+ ++M+     QPD +
Sbjct: 209 QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR-ERGLQPDKF 267

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           ++ +++      GK+  A  +F +       P++   ++LI    KA R D+  +   ++
Sbjct: 268 SYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKM 327

Query: 324 PELGITPD 331
            E    PD
Sbjct: 328 RENSCEPD 335



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 152/352 (43%), Gaps = 13/352 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +ST+I  +      D    ++ +M   G  PN++TYN LL  + R     +   +
Sbjct: 194 PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 253

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM + GL P+  +Y +L+    +    +  L V+ +         V  Y+TL+A    
Sbjct: 254 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCK 313

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNL 297
            G  DEA ++FE M+ + +C+PD  TF++++    C+G ++ EA+ +   M +    PN+
Sbjct: 314 AGRLDEACKLFEKMREN-SCEPDVVTFTALMD-GLCKGDRLQEAQQVLETMEDRNCTPNV 371

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
              +SLI    K  +  D      R+   GI P+      L++    T   +   L   +
Sbjct: 372 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL---L 428

Query: 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENA 417
            +  +  G +  ++     I+G  K       N +  D+K  +CN   D+     L+   
Sbjct: 429 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCN--PDVITYSCLIGGF 486

Query: 418 CKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALE 469
           CKL  + +   ++ D+  ++     +   +L  G     L   ++D  + LE
Sbjct: 487 CKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGL---VDDAERLLE 535



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 157/359 (43%), Gaps = 11/359 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+++ A  L +  R      D   ++ +I     A N    L+ +  M+    + N+I
Sbjct: 71  KSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMEC---EKNVI 127

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+  ++D + +A R  +  T + +M   G  PN  TY  L+  + +         + +EM
Sbjct: 128 TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 187

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G+  +V  Y+T++         D A+++F  M  +  C P+  T++++++     G 
Sbjct: 188 KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN-GCMPNLVTYNTLLSGLCRNGL 246

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  + +EM E G +P+ F   +L+    K  + D  ++           PD      
Sbjct: 247 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 306

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           L+  + +  + +E  KL E + +++ +   V    L +   +GD  +EA ++  ++    
Sbjct: 307 LIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDR- 365

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
                NC  ++    +L++  CK  ++    EV+  +  R      +   SL  G  +T
Sbjct: 366 -----NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMT 419



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 31/215 (14%)

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
           K  G   N+ TYN L + + RA+R  +   I K     G++PN  TYA +++   ++   
Sbjct: 16  KQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDL 75

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---------- 257
           +    +  EM+E G      +YN ++        T +A + F  M+  +N          
Sbjct: 76  DKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDG 135

Query: 258 -CQ--------------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            C+                    P+ WT++ +I       KV  A  +  EM E+G  PN
Sbjct: 136 LCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPN 195

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   +++I  + +  + D   +   ++ E G  P+
Sbjct: 196 VVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPN 230


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 1/221 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L++++G AGN+   L V +EM+  G +P+ +TYN L  T  RA    +       MT
Sbjct: 282 YNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMT 341

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL PN  TY +++ AYG     ++ L+++ +MK+ G   +V  YN +L M        
Sbjct: 342 SKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFT 401

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
              E+  +M S   C P+  T+++M+ +C  RG       +   M   G E +     +L
Sbjct: 402 VMLEMLGEM-SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTL 460

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           I  YG+     +  +  N +   G  P       LLNV+++
Sbjct: 461 IAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSR 501



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNAF+  T++  YG  G  D  L ++++MK  G  PN+ TYN +L  +G+  R   +  +
Sbjct: 347 PNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEM 406

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM+ +G +PN  T+ ++L   G+    +    V   MK  G++LS   YNTL+A    
Sbjct: 407 LGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGR 466

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    AF+++ +M +S    P   T+++++ + S +G  S A+++ ++M   GF+PN  
Sbjct: 467 CGSRTNAFKMYNEM-TSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQ 525

Query: 299 VLTSLIQCYGKA 310
             + L+QCY K 
Sbjct: 526 SYSLLLQCYAKG 537



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 128/254 (50%), Gaps = 8/254 (3%)

Query: 85  PRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NF 137
           P  S+L  ++Y T      RAG  E A  L+   R +        ++ ++ +YG  G ++
Sbjct: 166 PPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSW 225

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
              + + +EM+A GV+P+  T + ++    R     +    ++++   G +P   TY +L
Sbjct: 226 PRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNAL 285

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           L+ +G+A    + L V +EM++ G Q     YN L    A  G+ +EA +  + M +S+ 
Sbjct: 286 LQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTM-TSKG 344

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             P+++T+++++T     GKV EA A+F++M ++G  PN+     ++   GK  R   ++
Sbjct: 345 LLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVML 404

Query: 318 RALNRLPELGITPD 331
             L  +   G TP+
Sbjct: 405 EMLGEMSRSGCTPN 418



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 3/212 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++P+ F  ST+I      G  D  +  +E++KA G  P ++TYN LL   G+A    +  
Sbjct: 240 VEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEAL 299

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + KEM  +G  P+  TY  L   Y RA + E+       M  KG+  +   YNT++   
Sbjct: 300 RVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAY 359

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            ++G  DEA  +F+ MK S  C P+  T++ ++ +   + + +    M  EM  +G  PN
Sbjct: 360 GNIGKVDEALALFDQMKKS-GCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPN 418

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
                +++   GK    D V R L  +   G+
Sbjct: 419 RVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGV 450



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 1/243 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN   A  +      +  + D   ++ L   Y  AG ++      + M + G+ PN  
Sbjct: 291 KAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAF 350

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++   G   +  +   ++ +M  +G  PN NTY  +L   G+       L +  EM
Sbjct: 351 TYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEM 410

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   +   +NT+LA+C   G  D    + E MKS    +    T++++I      G 
Sbjct: 411 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSC-GVELSRDTYNTLIAAYGRCGS 469

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            + A  M+NEM  AGF P L    +L+    +          ++++   G  P+D+    
Sbjct: 470 RTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSL 529

Query: 338 LLN 340
           LL 
Sbjct: 530 LLQ 532



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 7/213 (3%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++TLI  YG  G+      +Y EM + G  P + TYN LL+ + R       ++I  +
Sbjct: 455 DTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSK 514

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CAD 238
           M   G  PN  +Y+ LL+ Y +        ++ +E+    +  S  +  TL+     C  
Sbjct: 515 MRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRR 574

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +G  ++AF+  +    +    PD   F+SM+++ +  G  S+   +F+ + ++G  P+L 
Sbjct: 575 LGGIEKAFQEVK----ARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLI 630

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              SL+  Y K   + +  + LN+L    + PD
Sbjct: 631 TYNSLMDMYAKCSESWEAEKILNQLKSSQVKPD 663



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 111/234 (47%), Gaps = 1/234 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+   A  +  + R + ++ +  ++S L++ Y   GN  G   + +E+    V P+ 
Sbjct: 500 SRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSW 559

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +    L+    + +R   ++  ++E+   G +P+   + S+L  Y +         ++  
Sbjct: 560 VILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDS 619

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K+ G+   +  YN+L+ M A    + EA +I   +KSS+  +PD  +++++I     +G
Sbjct: 620 IKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQ-VKPDVVSYNTVINGFCKQG 678

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            + EA+ + +EM+  G  P +    +L+  Y   +   +    +N + +  + P
Sbjct: 679 LIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKP 732



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 116/248 (46%), Gaps = 7/248 (2%)

Query: 89  KLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 142
           +L   +Y+T      R G+   AF +Y+   +  +      ++ L+ +    G++    +
Sbjct: 451 ELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQS 510

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           +  +M+  G KPN  +Y+ LL    +      +  I KE+    + P+W    +L+ A  
Sbjct: 511 IVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANF 570

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           + R        ++E+K +G    + ++N++L+M A  G   +  EIF+ +K S    PD 
Sbjct: 571 KCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQS-GLSPDL 629

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++S++ + +   +  EAE + N++  +  +P++    ++I  + K     +  R L+ 
Sbjct: 630 ITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSE 689

Query: 323 LPELGITP 330
           +   G+ P
Sbjct: 690 MIADGMAP 697



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 7/215 (3%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++T++ + G  G  D    V E MK+ GV+ +  TYN L+   GR         +
Sbjct: 417 PNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKM 476

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y EMT  G +P   TY +LL    R        S+  +M+ KG + +   Y +LL  C  
Sbjct: 477 YNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSY-SLLLQCYA 535

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS--CRGKVSEAEAMFNEMLEAGFEPN 296
            G      +  E         P SW     + I +  CR ++   E  F E+   G+ P+
Sbjct: 536 KGGNIAGIDAIEKEVYGGTVFP-SWVILRTLVIANFKCR-RLGGIEKAFQEVKARGYNPD 593

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           L +  S++  Y K      V    + + + G++PD
Sbjct: 594 LVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPD 628



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 95/201 (47%), Gaps = 8/201 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +E AF      +   +  D   F++++ +Y   G +     +++ +K  G+ P++I
Sbjct: 574 RLGGIEKAF---QEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLI 630

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+D   +    W+ + I  ++  + + P+  +Y +++  + +    ++   +  EM
Sbjct: 631 TYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEM 690

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRG 276
              GM   V  Y+TL+   A +    EA E+   M    N +P   T+  ++ + C  + 
Sbjct: 691 IADGMAPCVVTYHTLVGGYASLEMFSEAREVINYM-IQHNLKPMELTYRRVVDSYCKAK- 748

Query: 277 KVSEAEAMFNEMLEAGFEPNL 297
           +  EA +  +E+ E   +PN 
Sbjct: 749 RFEEARSFLSEVSET--DPNF 767



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           SLL+A   + + E  L++ R    +G   +  L   + A+  + G  D    + ++M   
Sbjct: 108 SLLKALELSGHWEWALALLRWAGAEGAADASALEMVVRALGRE-GQHDAVCALLDEMPLP 166

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT-D 314
              + D   +++++   S  G+   A  +F E+   G  P L     ++  YG+  R+  
Sbjct: 167 PGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWP 226

Query: 315 DVVRALNRLPELGITPDD 332
            +V  L+ +   G+ PDD
Sbjct: 227 RIVALLDEMRAAGVEPDD 244



 Score = 38.9 bits (89), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 60/134 (44%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           + ++ ++ + + D  +++T+I  +   G       +  EM A G+ P ++TY+ L+    
Sbjct: 651 ILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYA 710

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
             +   + + +   M  + L P   TY  ++ +Y +A+  E+  S   E+ E        
Sbjct: 711 SLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEVSETDPNFDKK 770

Query: 228 LYNTLLAMCADVGY 241
           + +TL A   D  +
Sbjct: 771 VLHTLAAYIEDAQF 784


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 117/237 (49%), Gaps = 1/237 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R GN+E A   +D   +++ R D   ++TLI      G+      ++++M +  + PN +
Sbjct: 416 RDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHV 475

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+D+     +         EM + G+ PN  TY S+++ Y R+           +M
Sbjct: 476 TYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKM 535

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +   +   +  YNTL+      G   EAF + + M++ EN QPD+ T++ +I+  S  G 
Sbjct: 536 RHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMEN-ENVQPDAVTYNMIISGFSVHGN 594

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           + EA+ ++ +M   G EP+ +   S+I  +  A  +    +  + + + G+ PDD+F
Sbjct: 595 MQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPDDKF 651



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 38/270 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC----------------- 140
           RAG +E A   Y   R  +   D  +FS LI L+   G  D                   
Sbjct: 276 RAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGV 335

Query: 141 ------------------LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
                             L V +EM A G  P+++TYN LL+ + + +R    + +  EM
Sbjct: 336 IYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEM 395

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGY 241
            + G+ P+  T+ +L+  Y R    E  L  +  + ++ ++  +  YNTL+  MC   G 
Sbjct: 396 KERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQ-GD 454

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             +A E+++DM S E   P+  T+S +I     +G+V  A A  +EM+  G  PN+    
Sbjct: 455 LGKANELWDDMHSRE-IFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYN 513

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           S+I+ Y ++       + L ++    + PD
Sbjct: 514 SIIKGYCRSGNVSKGQQFLPKMRHDKVMPD 543



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 143/343 (41%), Gaps = 14/343 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG   +    Y    +    ++    + ++  Y     F     V  EM+   V P+++
Sbjct: 136 RAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVV 195

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N ++D   RA        +   M   G+ P   TY S+L+   R    +    V+R M
Sbjct: 196 THNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAM 255

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+   V  +N L+      G  +EA   +++M+      PD  +FS +I + + RG+
Sbjct: 256 DACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMR-GRRVTPDVVSFSCLIGLFTRRGE 314

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A     EM E G  P+  + T +I  + +A    + +R  + +   G  PD      
Sbjct: 315 MDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNT 374

Query: 338 LLNVMTQTPK----EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
           LLN + +  +    EEL  L E  E+           L+     +G+ +K A + F++IS
Sbjct: 375 LLNGLCKERRLSDAEEL--LNEMKERGVPPDLCTFTTLIHGYCRDGNIEK-ALQFFDTIS 431

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436
               +       D+     L++  C+  +LG   E++ D+ SR
Sbjct: 432 DQRLRP------DIVTYNTLIDGMCRQGDLGKANELWDDMHSR 468


>gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27270-like [Cucumis sativus]
          Length = 1062

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 19/278 (6%)

Query: 71  GSSPKSYIWVNPKSPRAS----KLKEKSYD-------------TRAGNVEMAFGLYDRAR 113
           GS   +YI  + K+  AS    +L EK YD             T  G   +A  +   + 
Sbjct: 707 GSMIDAYIKCD-KAEEASTLYKELIEKGYDLGAVAVSRIVNTLTVGGKHRVAENVVRASL 765

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N    +D  AF+T IK     G       +YE M A+G+ P++ TYN ++   GR ++  
Sbjct: 766 NCGLELDTVAFNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLD 825

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++     +GLSP+   Y +L+  YG+A    +   +++EM E+G++  +  YN ++
Sbjct: 826 KAVEMFNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMVSYNIMV 885

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            + A+ G  +E   + + M+  +   PDS+T+ S+I   +   K SEAE + N M E G 
Sbjct: 886 NVYANAGLHEETENLLKAME-QDAIVPDSFTYFSLIRAYTQSCKYSEAEKIINSMQEKGI 944

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                    L+    KA       R  + L   G++PD
Sbjct: 945 PTTCAHYDLLLSALAKAGMIRKAERVYDELQTAGLSPD 982



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 149/308 (48%), Gaps = 18/308 (5%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A  T++  Y   G+    L+ Y  +K  G+ P +  +N +L ++ +     +VK ++
Sbjct: 223 DEVACGTMLCTYARWGHHKTMLSFYSAVKDRGIVPPIAVFNFMLSSLQKKGLHAKVKELW 282

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M + G++ +  TY  ++ +  +  + E+   V+ EMK  G       YN L+++    
Sbjct: 283 MQMVEIGVTFSDFTYTVVINSLVKEGHSEEAFKVFNEMKNCGFIPEEVTYNLLISLSIKR 342

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
             +DE   +++DM+  ++  P ++T SS++T+    G  S+A ++F+EM       +  +
Sbjct: 343 ENSDEVLRLYKDMR-DKDIVPSNYTCSSLLTLFYKNGDYSKALSLFSEMESKKVVVDEVI 401

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358
              LI+ YGK    +D  +    + +LG+  D++    +  V   +   E+   ++E ++
Sbjct: 402 YGLLIRIYGKLGLYEDAHKTFEEMEQLGLLTDEKSYLAMAQVHLNSRNFEKALDIIELMK 461

Query: 359 KSN---SKLGYVVKL--LLEEQDIEGDFKKEATELFNSISK----DVKKAYCNCLIDLCV 409
             N   S+  Y+V L   + ++DI     + A   F ++SK    D +   C  +++L +
Sbjct: 462 SRNIWLSRFAYIVSLQCYVMKEDI-----RSAESTFQALSKTGLPDARS--CIYILNLYL 514

Query: 410 NLNLLENA 417
            L+L+  A
Sbjct: 515 KLDLVNKA 522



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 113/232 (48%), Gaps = 3/232 (1%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            R   ++ A  +++ AR+     D  A++ LI  YG AG       +++EM   GVKP M+
Sbjct: 820  RGRKLDKAVEMFNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMV 879

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +YN +++    A    + + + K M  + + P+  TY SL+RAY ++    +   +   M
Sbjct: 880  SYNIMVNVYANAGLHEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKYSEAEKIINSM 939

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +EKG+  +   Y+ LL+  A  G   +A  ++++++++    PD     +++      G 
Sbjct: 940  QEKGIPTTCAHYDLLLSALAKAGMIRKAERVYDELQTA-GLSPDVTCNRTLMRGYLDYGY 998

Query: 278  VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            V E    F    +  +  + F++++ +  Y    + D+ +  L+ +  LG++
Sbjct: 999  VREGIKFFESTCK--YAGDRFIMSAAVHFYKAEGKEDEALNILDSMKTLGLS 1048



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 108/247 (43%), Gaps = 12/247 (4%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PNMITYNNLLDTMGRAKRPWQVK 176
           R+D    ++LI LYG     +    V   + A+     + + + +++D   +  +  +  
Sbjct: 667 RLDDAIIASLISLYGKERKINQAAEV---LAAVANSCTSTLIFGSMIDAYIKCDKAEEAS 723

Query: 177 TIYKEMTDNGLSPNWNTYASL---LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           T+YKE+ + G        + +   L   G+ R  E+   V R     G++L    +NT +
Sbjct: 724 TLYKELIEKGYDLGAVAVSRIVNTLTVGGKHRVAEN---VVRASLNCGLELDTVAFNTFI 780

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
               + G    A  I+E M +     P   T+++MI++     K+ +A  MFN    +G 
Sbjct: 781 KAMLEGGKLHFASRIYEHMIAL-GIVPSIQTYNTMISVYGRGRKLDKAVEMFNAARSSGL 839

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP-KEELGK 352
            P+    T+LI CYGKA +T +       + E G+ P       ++NV       EE   
Sbjct: 840 SPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMVSYNIMVNVYANAGLHEETEN 899

Query: 353 LVECVEK 359
           L++ +E+
Sbjct: 900 LLKAMEQ 906



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 2/201 (0%)

Query: 142 NVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           +V++ MK  +  +P++I Y  +L   G+  +    +  + EM + GL P+     ++L  
Sbjct: 174 DVFDWMKLQLSYRPSVIVYTIVLRAYGQVGKIKLAEETFLEMLEVGLEPDEVACGTMLCT 233

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           Y R  + +  LS Y  +K++G+   + ++N +L+     G   +  E++  M        
Sbjct: 234 YARWGHHKTMLSFYSAVKDRGIVPPIAVFNFMLSSLQKKGLHAKVKELWMQMVEIGVTFS 293

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D +T++ +I      G   EA  +FNEM   GF P       LI    K + +D+V+R  
Sbjct: 294 D-FTYTVVINSLVKEGHSEEAFKVFNEMKNCGFIPEEVTYNLLISLSIKRENSDEVLRLY 352

Query: 321 NRLPELGITPDDRFCGCLLNV 341
             + +  I P +  C  LL +
Sbjct: 353 KDMRDKDIVPSNYTCSSLLTL 373



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 7/227 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F ++I  Y      +    +Y+E+   G     +  + +++T+    +    + + +   
Sbjct: 706 FGSMIDAYIKCDKAEEASTLYKELIEKGYDLGAVAVSRIVNTLTVGGKHRVAENVVRASL 765

Query: 184 DNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           + GL  +   +NT+   +   G+  +      +Y  M   G+  S+  YNT++++     
Sbjct: 766 NCGLELDTVAFNTFIKAMLEGGKLHFAS---RIYEHMIALGIVPSIQTYNTMISVYGRGR 822

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             D+A E+F   +SS    PD   ++++I+     GK  EA  +F EMLE G +P +   
Sbjct: 823 KLDKAVEMFNAARSS-GLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMVSY 881

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
             ++  Y  A   ++    L  + +  I PD      L+   TQ+ K
Sbjct: 882 NIMVNVYANAGLHEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCK 928


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 119/230 (51%), Gaps = 4/230 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A  +++R + ++ +     ++ LI LYG A      L V+ EM++   KPN+ 
Sbjct: 288 KGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNIC 347

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+  L++   R     + + I++++ + GL P+   Y +L+ AY RA +      ++  M
Sbjct: 348 TFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLM 407

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN ++      G  ++A  +FE MK      P   +   +++  S  GK
Sbjct: 408 QHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRL-GITPTMKSHMLLLSAYSRAGK 466

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLP 324
           V++ E + N+M ++G +P+ FVL S++  YG+    ++ ++V+ A+ + P
Sbjct: 467 VAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGP 516



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 7/270 (2%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI 150
           K+Y T +G +E A  ++   R  K+   P+A  ++  I      G+    + ++E MK  
Sbjct: 249 KAYCT-SGLLEKAEAVFAEMR--KYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRD 305

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
             +P+  TY  L++  G+A + +    ++ EM      PN  T+ +L+ A+ R    E  
Sbjct: 306 RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKA 365

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             ++ +++E G++  V  YN L+   +  G+   A EIF  M+    C+PD  +++ M+ 
Sbjct: 366 EEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM-GCEPDRASYNIMVD 424

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G   +A+A+F  M   G  P +     L+  Y +A +       +N++ + GI P
Sbjct: 425 AYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 484

Query: 331 DDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
           D      +LN+  +  + E++ +++  +EK
Sbjct: 485 DTFVLNSMLNLYGRLGQFEKMEEVLTAMEK 514



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 114/237 (48%), Gaps = 7/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A    MA  ++   R++K + +   F+ L+  +   G  +    ++E+++  G++P++ 
Sbjct: 323 KASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVY 382

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L++   RA  P+    I+  M   G  P+  +Y  ++ AYGRA   ED  +V+  M
Sbjct: 383 AYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVM 442

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+  ++  +  LL+  +  G   +  EI   M  S   +PD++  +SM+ +    G+
Sbjct: 443 KRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKS-GIKPDTFVLNSMLNLYGRLGQ 501

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLPELGITPD 331
             + E +   M +  +  ++     LI  YG+A    R +++ R+   LP   + PD
Sbjct: 502 FEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRS---LPARNLIPD 555



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 114/240 (47%), Gaps = 6/240 (2%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L+K Y T+G  +    V+ EM+  G  P+ + YN  +D + +     +   I++ 
Sbjct: 242 DTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFER 301

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +   P+  TY  L+  YG+A      L V+ EM+ +  + ++  +  L+   A  G 
Sbjct: 302 MKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGL 361

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A EIFE ++ +   +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 362 CEKAEEIFEQLQEA-GLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYN 420

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
            ++  YG+A   +D       +  LGITP  +    LL+  ++      GK+ +C E  N
Sbjct: 421 IMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRA-----GKVAKCEEIVN 475



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++I YN L+D  G+     + ++ Y E+ +    P  +TYA LL+AY  +   E   +V
Sbjct: 204 PDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAV 263

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + EM++ G   S  +YN  +      G T +A EIFE MK  + CQP + T++ +I +  
Sbjct: 264 FAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK-RDRCQPSTATYTMLINLYG 322

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              K   A  +F+EM     +PN+   T+L+  + +    +       +L E G+ PD
Sbjct: 323 KASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPD 380



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 4/229 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG    A  ++   ++     D  +++ ++  YG AG  +    V+E MK +G+ P M
Sbjct: 392 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTM 451

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    RA +  + + I  +M  +G+ P+     S+L  YGR    E    V   
Sbjct: 452 KSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTA 511

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++      ++ YN L+ +    G+     E+F  +  + N  PD  T++S I   S R 
Sbjct: 512 MEKGPYPADISTYNILINIYGRAGFFARMEELFRSL-PARNLIPDVVTWTSRIGAYSRRK 570

Query: 277 KVSEAEAMFNEMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNR 322
           + +    +F EM++AG  P+     VL S      + Q    V+R +++
Sbjct: 571 QYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHK 619


>gi|299116347|emb|CBN76149.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 5/238 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G  + A  L    R +  + D  ++++ I     AGN +  L +   M+A  V P++I 
Sbjct: 632 GGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLRAMEASNVVPDVIA 691

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
               +D +    +  +  TI  EM   G++PN  TY + ++A GR    +  L +   ++
Sbjct: 692 MTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAIQACGRGGQWQRALELLSRLE 751

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE---NCQPDSWTFSSMITICSCR 275
            +    +V  YN  +  C   G +  A  + E MK+++   N  PD  T++S I  CS  
Sbjct: 752 NRASGATVQEYNCAMMACVTGGESGRALALLEQMKANKGGVNAGPDMVTYTSAIMACSST 811

Query: 276 GKVSEAEAMFNEMLEAG--FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           GK   A ++ +EM EAG   +PN+   T+ I   G+A++ ++ V   ++L E G++PD
Sbjct: 812 GKWDRALSLLDEMREAGPRTQPNIRSYTAAIAACGRARKWEEAVALHSKLLEEGMSPD 869



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 28/239 (11%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM------------ 166
           +D ++F  ++     AG +   L+V  EM   GV P  + +N +L               
Sbjct: 491 LDHSSFMAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSG 550

Query: 167 -GRAKRP---WQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYG---EDTLSVYREMK 218
            G AKR    W +   +  +M   G+ P+  TY SL+      R+G   +  L +   M 
Sbjct: 551 GGAAKREAPRWPMALELLADMERRGVEPDVVTYNSLINVL---RWGGQRDRALEILDGMN 607

Query: 219 EKG----MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            KG    ++  V  YN+ +A CA  G + +A ++  +M+  +  +PD ++++S I  CS 
Sbjct: 608 AKGGAGGVRPDVITYNSAIAACASGGESKKASQLIGEMRR-KGLKPDRYSYTSAIHACSK 666

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            G   EA  +   M  +   P++  +T+ +       +  + +  L+ +   G+TP++R
Sbjct: 667 AGNPEEALRLLRAMEASNVVPDVIAMTACMDALAAGGKWSEAITILDEMRSKGVTPNER 725



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 7/169 (4%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG----VKPNMITYNNLLDTMGR 168
           E+  ++P+   +++LI +    G  D  L + + M A G    V+P++ITYN+ +     
Sbjct: 572 ERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGGVRPDVITYNSAIAACAS 631

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
                +   +  EM   GL P+  +Y S + A  +A   E+ L + R M+   +   V  
Sbjct: 632 GGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLRAMEASNVVPDVIA 691

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
               +   A  G   EA  I ++M+ S+   P+  T+ + I  C   G+
Sbjct: 692 MTACMDALAAGGKWSEAITILDEMR-SKGVTPNERTYKAAIQACGRGGQ 739



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +++ I    + G +D  L++ +EM+  G   +PN+ +Y   +   GRA++  +   ++ +
Sbjct: 801 YTSAIMACSSTGKWDRALSLLDEMREAGPRTQPNIRSYTAAIAACGRARKWEEAVALHSK 860

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           + + G+SP+  ++ +++RA  R    + ++ +   M E G+         L++  +D G 
Sbjct: 861 LLEEGMSPDPASFNAVIRAARRGGQHKLSMKLLASMVEAGLTPDGVTVGELISSLSDRGR 920

Query: 242 TDEAFEIFE 250
            D+A  + E
Sbjct: 921 WDDAQRVVE 929


>gi|399219185|emb|CCF76072.1| unnamed protein product [Babesia microti strain RI]
          Length = 767

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 95/183 (51%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
           LIK     GN   CL +  +MK  G+ P++ TYNN+L +    K P   + IY +M    
Sbjct: 289 LIKQRALDGNLTDCLEILNKMKIYGLNPSVQTYNNVLLSTCALKNPKSARFIYLKMVAES 348

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
           L+P+  T++ L++ +  AR      ++ R+M+  G+   V +++ L+    + G+ D A+
Sbjct: 349 LTPDIKTFSILIKTHVLARDLNSAFALQRKMERDGIASDVVVFSILIDGLVNNGHVDRAW 408

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
           E +   ++    +PD   F+ MI  C   G+V +A  +++EM+  G  P     T+LI+ 
Sbjct: 409 ETYNYARTWRLIEPDQVLFTIMIKACYKNGEVEKALNLYDEMIAMGLHPTDLTYTTLIKS 468

Query: 307 YGK 309
            GK
Sbjct: 469 MGK 471



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 7/217 (3%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N + A  +Y +   E    D   FS LIK +  A + +    +  +M+  G+  +++ ++
Sbjct: 333 NPKSARFIYLKMVAESLTPDIKTFSILIKTHVLARDLNSAFALQRKMERDGIASDVVVFS 392

Query: 161 NLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            L+D +   G   R W+  T     T   + P+   +  +++A  +    E  L++Y EM
Sbjct: 393 ILIDGLVNNGHVDRAWE--TYNYARTWRLIEPDQVLFTIMIKACYKNGEVEKALNLYDEM 450

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
              G+  +   Y TL+ +M    G+ D+AF  +  MK  E+       +  ++  C   G
Sbjct: 451 IAMGLHPTDLTYTTLIKSMGKRKGFMDKAFHFYNLMKC-EDMPITKSVYQHLLKCCGRNG 509

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
             S AE   NE   AGF+P    +  LI    K  R 
Sbjct: 510 VYSRAELTLNEYKNAGFQPEEVDIYHLIMSMKKGARV 546



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 9/142 (6%)

Query: 100 GNVEMAFGLYDRARNEKWR-IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           G+V+ A+  Y+ AR   WR I+P+   F+ +IK     G  +  LN+Y+EM A+G+ P  
Sbjct: 402 GHVDRAWETYNYART--WRLIEPDQVLFTIMIKACYKNGEVEKALNLYDEMIAMGLHPTD 459

Query: 157 ITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVY 214
           +TY  L+ +MG+ K    +    Y  M    +    + Y  LL+  GR   Y    L++ 
Sbjct: 460 LTYTTLIKSMGKRKGFMDKAFHFYNLMKCEDMPITKSVYQHLLKCCGRNGVYSRAELTL- 518

Query: 215 REMKEKGMQ-LSVTLYNTLLAM 235
            E K  G Q   V +Y+ +++M
Sbjct: 519 NEYKNAGFQPEEVDIYHLIMSM 540


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 1/221 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ L++++G AGN+   L V  EM+  G +P+ +TYN L  T  RA    +       M 
Sbjct: 283 YNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMA 342

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL PN  TY +++ AYG     ++ L+++ +MK+ G   +V  YN +L M        
Sbjct: 343 SKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFT 402

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
              E+  +M  S  C P+  T+++M+ +C  RG       +   M   G E +     +L
Sbjct: 403 VMLEMLGEMSRS-GCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTL 461

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           I  YG+     +  +  N +   G TP       LLNV+++
Sbjct: 462 IAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSR 502



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 126/254 (49%), Gaps = 8/254 (3%)

Query: 85  PRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NF 137
           P  S+L  ++Y T      RAG  E A  L+   R +        ++ ++ +YG  G ++
Sbjct: 167 PPGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSW 226

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
              + + +EM+A GV+P+  T + ++    R     +    ++++   G +P   TY +L
Sbjct: 227 PRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNAL 286

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           L+ +G+A    + L V  EM++ G Q     YN L    A  G+ +EA    + M +S+ 
Sbjct: 287 LQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTM-ASKG 345

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             P+++T+++++T     GKV EA A+F++M + GF PN+     ++   GK  R   ++
Sbjct: 346 LLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVML 405

Query: 318 RALNRLPELGITPD 331
             L  +   G TP+
Sbjct: 406 EMLGEMSRSGCTPN 419



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNAF+  T++  YG  G  D  L ++++MK  G  PN+ TYN +L  +G+  R   +  +
Sbjct: 348 PNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEM 407

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM+ +G +PN  T+ ++L   G+    +    V   M+  G++LS   YNTL+A    
Sbjct: 408 LGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGR 467

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    AF+++ +M S+    P   T+++++ + S +G  S A+++ ++M   GF+PN  
Sbjct: 468 CGSRTNAFKMYNEMTSA-GFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQ 526

Query: 299 VLTSLIQCYGKA 310
             + L+QCY K 
Sbjct: 527 SYSLLLQCYAKG 538



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 2/233 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ A  L+D+ +   +  + N ++ ++ + G    F   L +  EM   G  PN +T+
Sbjct: 364 GKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTW 423

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +L   G+      V  + + M   G+  + +TY +L+ AYGR     +   +Y EM  
Sbjct: 424 NTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTS 483

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G    +T YN LL + +  G    A  I   M+ ++  +P+  ++S ++   +  G V+
Sbjct: 484 AGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMR-TKGFKPNEQSYSLLLQCYAKGGNVA 542

Query: 280 EAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              A+ NE+  +G   P+  +L +L+    K +R D +  A   +   G  PD
Sbjct: 543 GIAAIENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPD 595



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 1/243 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN   A  +         + D   ++ L   Y  AG F+      + M + G+ PN  
Sbjct: 292 KAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAF 351

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++   G   +  +   ++ +M   G  PN NTY  +L   G+       L +  EM
Sbjct: 352 TYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEM 411

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   +   +NT+LA+C   G  D    + E M+S    +    T++++I      G 
Sbjct: 412 SRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSC-GVELSRDTYNTLIAAYGRCGS 470

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            + A  M+NEM  AGF P +    +L+    +          ++++   G  P+++    
Sbjct: 471 RTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSL 530

Query: 338 LLN 340
           LL 
Sbjct: 531 LLQ 533



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 109/235 (46%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPN 155
           +R G+   A  +  + R + ++ +  ++S L++ Y   GN  G   +  E+   G V P+
Sbjct: 501 SRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPS 560

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +    L+    + +R   ++T ++E+   G +P+   + S+L  Y +         V+ 
Sbjct: 561 WVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFD 620

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            +K  G+   +  YN+L+ M A    + EA +I   +K S+  +PD  +++++I     +
Sbjct: 621 SIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQ 680

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           G V EA+ + +EM+  G  P      +L+  Y   +   +    +  + + G+ P
Sbjct: 681 GLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKP 735


>gi|302768815|ref|XP_002967827.1| hypothetical protein SELMODRAFT_88115 [Selaginella moellendorffii]
 gi|300164565|gb|EFJ31174.1| hypothetical protein SELMODRAFT_88115 [Selaginella moellendorffii]
          Length = 289

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 6/240 (2%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + +DP     +I + G A +FD  + V+     I VK +   YN LL    +A +   V 
Sbjct: 7   FHLDPYLRIHIIDVLGKASSFDIAVQVFNHFIKISVKKDAGMYNALLHAFCKAGKLEAVD 66

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAM 235
            ++++M  + + PN  +Y  L+ +Y +A +     +SV++EM  +G++ SV  YN L+A 
Sbjct: 67  DLFRDMKQS-IRPNHLSYNILMHSYVKAGHELTKVVSVFKEMYLRGVKASVASYNILIAA 125

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA---MFNEMLEAG 292
           CA      EA   F +MK  ++ +P+  T+SS+I +    G V    A   +  EM++A 
Sbjct: 126 CATGKQAWEARVFFSNMKK-QDLEPNVITYSSLINVYVASGDVGNCAAALDVLREMVKAE 184

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
             PN+   + L+  YG+  R ++ ++    + +LGI P       L+ + +++    L +
Sbjct: 185 VMPNVTTFSCLLHGYGQEGRIEEAMKIFQTMKDLGIEPSAITFNILMTMYSKSGHHALAQ 244



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 10/216 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN-FDGCLNVYEEMKAIGVKP 154
           +AG +E    + D  R+ K  I PN  +++ L+  Y  AG+     ++V++EM   GVK 
Sbjct: 58  KAGKLE---AVDDLFRDMKQSIRPNHLSYNILMHSYVKAGHELTKVVSVFKEMYLRGVKA 114

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTL 211
           ++ +YN L+      K+ W+ +  +  M    L PN  TY+SL+  Y   G        L
Sbjct: 115 SVASYNILIAACATGKQAWEARVFFSNMKKQDLEPNVITYSSLINVYVASGDVGNCAAAL 174

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            V REM +  +  +VT ++ LL      G  +EA +IF+ MK     +P + TF+ ++T+
Sbjct: 175 DVLREMVKAEVMPNVTTFSCLLHGYGQEGRIEEAMKIFQTMKDL-GIEPSAITFNILMTM 233

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
            S  G  + A++ F+EM+E+G EP      SL+ C+
Sbjct: 234 YSKSGHHALAQSCFHEMIESGLEPTYVSFLSLMYCF 269



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 115 EKWRIDPNA--FSTLIKLY---GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           +K  ++PN   +S+LI +Y   G  GN    L+V  EM    V PN+ T++ LL   G+ 
Sbjct: 143 KKQDLEPNVITYSSLINVYVASGDVGNCAAALDVLREMVKAEVMPNVTTFSCLLHGYGQE 202

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
            R  +   I++ M D G+ P+  T+  L+  Y ++ +     S + EM E G++ +   +
Sbjct: 203 GRIEEAMKIFQTMKDLGIEPSAITFNILMTMYSKSGHHALAQSCFHEMIESGLEPTYVSF 262

Query: 230 NTLLAMCADVGYTDEA 245
            +L+     VG   E 
Sbjct: 263 LSLMYCFKSVGAYKEV 278


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 124/250 (49%), Gaps = 6/250 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++T+I  +   G      N+Y EM   G  P+++T+N++++ + +A+     + + 
Sbjct: 115 DVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLL 174

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M DNG+ PN  TY S++  Y      E+   ++REM  +G+   +  +N+ +      
Sbjct: 175 RQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKH 234

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G + EA EIF  M +++  +P+  T+  ++   +  G  ++  + FN M   G   N  V
Sbjct: 235 GRSKEAAEIFYSM-AAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLV 293

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
            T LI  Y K    D+ +  L+ +   G++PD      L++ + +     +G+L + V+K
Sbjct: 294 FTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCR-----MGRLADAVDK 348

Query: 360 SNSKLGYVVK 369
            N  +G  V+
Sbjct: 349 FNQMIGTGVQ 358



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 111/249 (44%), Gaps = 44/249 (17%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  LY     + +  D    +++I     A   D    +  +M   GV PN +
Sbjct: 128 KEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKV 187

Query: 158 TYNNLL---DTMGRAKRPWQVKT-IYKEMTDNGLSPN---WNTYASLLRAYGRAR----- 205
           TY +++    T+GR    W+  T +++EMT  GL P+   WN++   L  +GR++     
Sbjct: 188 TYTSMIHGYSTLGR----WEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEI 243

Query: 206 ---------------YG------------EDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
                          YG             D +S +  MK  G+  +  ++  L+   A 
Sbjct: 244 FYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAK 303

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEA  I  +M+  +   PD +T+S++I+     G++++A   FN+M+  G +PN  
Sbjct: 304 RGMMDEAMLILSEMQ-GQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTV 362

Query: 299 VLTSLIQCY 307
           V  SLIQ +
Sbjct: 363 VYHSLIQGF 371



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 1/197 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +  AF + D   +     D   ++TL+  Y  +G  D  LN++ EM    +KP  +T
Sbjct: 445 VGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVT 504

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +LD + RA R    + +  EM   G + +  TY  +L+   R    ++ + +++++ 
Sbjct: 505 YNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLC 564

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              ++ ++T  NT++     V   +EA ++F  + S     P++ T+  MI      G V
Sbjct: 565 TMNVKFNITTLNTMINSMYTVQRREEAKDLFSAI-SDSGLVPNASTYGIMIRNLLKEGSV 623

Query: 279 SEAEAMFNEMLEAGFEP 295
            EA+ MF+ M ++G  P
Sbjct: 624 EEADNMFSSMEKSGCAP 640



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 4/214 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +  L+  Y T G F   ++ +  MK  G+  N + +  L+D   +     +   I
Sbjct: 254 PNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLI 313

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM   GLSP+  TY++L+ A  R     D +  + +M   G+Q +  +Y++L+     
Sbjct: 314 LSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCT 373

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            G   +A E+  +M ++   +P+   F+S++ +IC   G+V +A  +F+ + + G   ++
Sbjct: 374 HGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICK-EGRVMDAHHIFDLVKDIGERSDI 432

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +  +LI  Y            L+ +   GI PD
Sbjct: 433 IMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPD 466



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 6/258 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  ++D  ++   R D   F+TLI  Y   G      +V + M + G+ P+  
Sbjct: 409 KEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTF 468

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   ++ R      +++EM+D  + P   TY  +L    RA        +  EM
Sbjct: 469 TYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEM 528

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G  +S+  YN +L        TDEA  +F+ +  + N + +  T ++MI       +
Sbjct: 529 IGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKL-CTMNVKFNITTLNTMINSMYTVQR 587

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             EA+ +F+ + ++G  PN      +I+   K    ++     + + + G  P    C  
Sbjct: 588 REEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAP----CSR 643

Query: 338 LLNVMTQTPKEELGKLVE 355
           LLN   +T  E+ G++V+
Sbjct: 644 LLNDTIRTLLEK-GEIVK 660



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 106/233 (45%), Gaps = 2/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  +    + +    D   +STLI      G     ++ + +M   GV+PN +
Sbjct: 303 KRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTV 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            Y++L+          + K +  EM +NG+  PN   + S++ +  +     D   ++  
Sbjct: 363 VYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDL 422

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K+ G +  + ++NTL+     VG   +AF + + M S+    PD++T+++++      G
Sbjct: 423 VKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISA-GIGPDTFTYNTLVNGYFKSG 481

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           ++ +   +F EM +   +P       ++    +A RT    + L+ +   G T
Sbjct: 482 RIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTT 534



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 2/180 (1%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P + TY  +++   RA+RP      +  +   GL  +     ++L+     +  +D + V
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 214 Y-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITI 271
             R M E G       Y  +L    D   + +A ++   M   E  C PD  T++++I  
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               GK+ +A  +++EM++ GF P++    S+I    KA+  D+    L ++ + G+ P+
Sbjct: 126 FFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPN 185



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 123/285 (43%), Gaps = 15/285 (5%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKRPWQV 175
           + PN   + +LI+ + T G+      +  EM   G+ +PN+  +N+++ ++ +  R    
Sbjct: 357 VQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDA 416

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             I+  + D G   +   + +L+  Y          SV   M   G+      YNTL+  
Sbjct: 417 HHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNG 476

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  D+   +F +M S +  +P + T++ ++      G+   A+ M +EM+  G   
Sbjct: 477 YFKSGRIDDGLNLFREM-SDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTV 535

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEELGKLV 354
           +L     +++   +   TD+ +    +L  + +  +      ++N M T   +EE   L 
Sbjct: 536 SLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLF 595

Query: 355 ECVEKSN-----SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
             +  S      S  G +++ LL+E  +E     EA  +F+S+ K
Sbjct: 596 SAISDSGLVPNASTYGIMIRNLLKEGSVE-----EADNMFSSMEK 635


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 2/237 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +ST I+ +  A +FD    V+EEM+      N +TYN ++  + R+    +     
Sbjct: 242 DVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFK 301

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM D GLSP+  TY +L+    +    ++  ++  EM   G++ ++ +Y TL+      
Sbjct: 302 EEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKE 361

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G T EAF+I ++M S+   QP+   + ++I      G++  A  +  EM++ G  P+ F 
Sbjct: 362 GKTAEAFDILKEMISA-GVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFT 420

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
              L+Q + +    D     LN +   GI P+    G ++N + Q  + +E G L+E
Sbjct: 421 YNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLE 477



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 111/231 (48%), Gaps = 6/231 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R+ N+E+AF +           D + +S+LI       + +  + + +EM   G++P +
Sbjct: 639 SRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGI 698

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVY 214
           + YN L+D   R+    + + ++  +   GL PN  TY +L+   G  + G+  D   +Y
Sbjct: 699 VCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALID--GNCKNGDITDAFDLY 756

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           +EM ++G+     +YN L   C+D    ++A  + E+M +      +   F++++     
Sbjct: 757 KEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFN--RGYANVSLFNTLVHGFCK 814

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           RGK+ E E + + M++    PN   +  ++  +GKA +  +  R    L +
Sbjct: 815 RGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQ 865



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 115/239 (48%), Gaps = 5/239 (2%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R D   ++ L++ +    + DG   +  EM+  G+ PN+ +Y  +++ + +     +   
Sbjct: 415 RPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGN 474

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLAM 235
           + +EM   GL PN   YA L+   G ++ G  +L+     +M +  +   +  YN+L+  
Sbjct: 475 LLEEMISEGLKPNAFMYAPLI--IGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKG 532

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            + VG  +EA E +  ++      PD +T+S +I      G + +A+ +  +ML +G +P
Sbjct: 533 LSTVGRMEEAEEYYAQVQ-KRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKP 591

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           N    T L++ Y K+   + V   L  +   G  PD+   G ++  ++++   E+  +V
Sbjct: 592 NADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMV 650



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 106/233 (45%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +E A   Y + +      D   +S LI  Y   GN +    +  +M   G+KPN  T
Sbjct: 536 VGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADT 595

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y +LL+   ++    +V +I + M  +G  P+ + Y  ++R   R+   E    V  E++
Sbjct: 596 YTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVE 655

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G+   + +Y++L++    +   ++A  + ++M + E  +P    ++++I      G +
Sbjct: 656 KNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEM-AKEGLEPGIVCYNALIDGFCRSGDI 714

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           S A  +F+ +L  G  PN    T+LI    K     D       + + GI PD
Sbjct: 715 SRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPD 767



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 111/273 (40%), Gaps = 37/273 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A + + A  +++  R     ++   ++ +I     +G  +      EEM   G+ P+  
Sbjct: 255 KARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAF 314

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++ + +  R  + K +  EM+ +GL PN   Y +L+  + +     +   + +EM
Sbjct: 315 TYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEM 374

Query: 218 KEKGMQLSVTLYNTLLAMCADVGY-----------------------------------T 242
              G+Q +  +Y+ L+     +G                                     
Sbjct: 375 ISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDK 434

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D AFE+  +M++S    P+ +++  MI      G+  EA  +  EM+  G +PN F+   
Sbjct: 435 DGAFELLNEMRNS-GILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAP 493

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           LI  + K         AL ++ +  + P D FC
Sbjct: 494 LIIGHSKEGNISLACEALEKMTKANVHP-DLFC 525



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 9/213 (4%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIY 179
               L+  Y   G+      V   M  +G+ P     N LL  + RA   +  W++K   
Sbjct: 175 VLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGF- 233

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   G+ P+  TY++ + A+ +AR  +    V+ EM+ +   ++   YN +++     
Sbjct: 234 --MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRS 291

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLF 298
           G  +EAF   E+M       PD++T+ +++    C+G ++ EA+A+ +EM  +G +PN+ 
Sbjct: 292 GAVEEAFGFKEEM-VDYGLSPDAFTYGALMN-GLCKGSRLKEAKALLDEMSCSGLKPNIV 349

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V  +L+  + K  +T +    L  +   G+ P+
Sbjct: 350 VYGTLVDGFMKEGKTAEAFDILKEMISAGVQPN 382



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 100/206 (48%), Gaps = 1/206 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+E A  L  +  N   + + + ++ L++ Y  + +++   ++ + M   G KP+  
Sbjct: 570 KTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNH 629

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++  + R++       +  E+  NGL P+ + Y+SL+    +    E  + +  EM
Sbjct: 630 IYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEM 689

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++  +  YN L+      G    A  +F+ +  ++   P+  T++++I      G 
Sbjct: 690 AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSIL-AKGLVPNCVTYTALIDGNCKNGD 748

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +++A  ++ EML+ G  P+ FV   L
Sbjct: 749 ITDAFDLYKEMLDRGIAPDAFVYNVL 774



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 108/238 (45%), Gaps = 7/238 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ GN+ +A    ++        D   +++LIK   T G  +     Y +++  G+ P+ 
Sbjct: 499 SKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDE 558

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY+ L+    +     +   + ++M ++GL PN +TY  LL  Y ++   E   S+ + 
Sbjct: 559 FTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQS 618

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G +    +Y  ++   +     + AF +  +++ +    PD   +SS+I+      
Sbjct: 619 MLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKN-GLVPDLHIYSSLISGLCKIA 677

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPD 331
            + +A  + +EM + G EP +    +LI  +    R+ D+ RA N    +   G+ P+
Sbjct: 678 DMEKAVGLLDEMAKEGLEPGIVCYNALIDGFC---RSGDISRARNVFDSILAKGLVPN 732



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 3/214 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PNAF  + LI  +   GN        E+M    V P++  YN+L+  +    R  + +
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAE 543

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             Y ++   GL P+  TY+ L+  Y +    E    + R+M   G++ +   Y  LL   
Sbjct: 544 EYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGY 603

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                 ++   I + M  S + +PD+  +  +I   S    +  A  +  E+ + G  P+
Sbjct: 604 FKSNDYEKVSSILQSMLGSGD-KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPD 662

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           L + +SLI    K    +  V  L+ + + G+ P
Sbjct: 663 LHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEP 696



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 1/187 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+    + L+DT  +         +   M D GL+P       LL+   RA   E    +
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKL 230

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
              M+  G+   V  Y+T +         D A ++FE+M+   +C  +  T++ MI+   
Sbjct: 231 KGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMR-RRDCAMNEVTYNVMISGLC 289

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G V EA     EM++ G  P+ F   +L+    K  R  +    L+ +   G+ P+  
Sbjct: 290 RSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIV 349

Query: 334 FCGCLLN 340
             G L++
Sbjct: 350 VYGTLVD 356


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 5/233 (2%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +V  AF LY    ++   I PN   +S LI  + T G     ++++ +M    +KP++ T
Sbjct: 212 HVNDAFDLYSEMVSKG--ISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYT 269

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N L+D   +  +  + KT++  M   G+ PN  TY SL+  Y   +      S+   M 
Sbjct: 270 FNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMS 329

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           ++G+   +  YN L+     +   DEA  +F++M   ++  PD  T++S+I      GK+
Sbjct: 330 QRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEM-HHKHIIPDVVTYNSLIDGLCKLGKI 388

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           S A  + +EM + G  P++   +S++    K  + D  +  L +L + GI P+
Sbjct: 389 SYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPN 441



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 1/217 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G ++ A  L+++   E  + D   F+ L+  +   G       V+  M   G+KPN++T
Sbjct: 245 VGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVT 304

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y +L+D     K   + K+I   M+  G++P+  +Y  L+  + + +  ++ +++++EM 
Sbjct: 305 YCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMH 364

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            K +   V  YN+L+     +G    A ++ ++M       PD  T+SS++       +V
Sbjct: 365 HKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEM-HDRGVPPDIITYSSILDALCKNHQV 423

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
            +A A+  ++ + G  PN++  T LI    K  R +D
Sbjct: 424 DKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLED 460



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 11/225 (4%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TLIK     G     L  ++ + A+G + + + Y  L+  + +         +
Sbjct: 125 PNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDL 184

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            + +  N + PN   Y++++    + ++  D   +Y EM  KG+  +V  Y+ L++    
Sbjct: 185 LRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFT 244

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           VG   +A ++F  M   EN +PD +TF+ ++      GK+ E + +F  M++ G +PN+ 
Sbjct: 245 VGQLKDAIDLFNKM-ILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVV 303

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
              SL+  Y   +  +     L  + + G+ PD        D FC
Sbjct: 304 TYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFC 348



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 115/269 (42%), Gaps = 13/269 (4%)

Query: 64  QYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNA 123
           Q+PH   G  P +  +         K          G +  A   +D      +++D   
Sbjct: 115 QHPHQLMGYHPNTITFTTLIKGLCLK----------GQIHQALLFHDNVVAMGFQLDQVG 164

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           + TLI      G     L++   +    V+PN++ Y+ ++D M + K       +Y EM 
Sbjct: 165 YGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMV 224

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
             G+SPN  TY++L+  +      +D + ++ +M  + ++  V  +N L+   C D G  
Sbjct: 225 SKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKD-GKM 283

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            E   +F  M   +  +P+  T+ S++       +V++A+++   M + G  P++     
Sbjct: 284 KEGKTVFA-MMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNI 342

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           LI  + K ++ D+ +     +    I PD
Sbjct: 343 LIDGFCKIKKVDEAMNLFKEMHHKHIIPD 371



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 2/192 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V+ A  L+    ++    D   +++LI      G     L + +EM   GV P++ITY++
Sbjct: 353 VDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSS 412

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +LD + +  +  +   +  ++ D G+ PN  TY  L+    +    ED  +++ ++  KG
Sbjct: 413 ILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             ++V  Y  ++    + G  DEA  +   MK + +C PD+ T+  +I     + +  +A
Sbjct: 473 YNITVNTYTVMIHGFCNKGLFDEALALLSKMKDN-SCIPDAVTYEIIIRSLFDKDENDKA 531

Query: 282 EAMFNEMLEAGF 293
           E +  EM+  G 
Sbjct: 532 EKL-REMITRGL 542



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 88/170 (51%), Gaps = 3/170 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++ LI  +      D  +N+++EM    + P+++TYN+L+D + +  +      + 
Sbjct: 336 DIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLV 395

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM D G+ P+  TY+S+L A  +    +  +++  ++K++G++ ++  Y  L+      
Sbjct: 396 DEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKG 455

Query: 240 GYTDEAFEIFED-MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           G  ++A  IFED +    N   +++T   MI     +G   EA A+ ++M
Sbjct: 456 GRLEDAHNIFEDLLVKGYNITVNTYTV--MIHGFCNKGLFDEALALLSKM 503



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 19/218 (8%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP----------------NWNTYASL 197
           P  I +N +L ++ ++K    V ++ ++M   G++P                N  T+ +L
Sbjct: 74  PPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHPNTITFTTL 133

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           ++           L  +  +   G QL    Y TL+     VG T  A ++   +  +  
Sbjct: 134 IKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNL- 192

Query: 258 CQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
            QP+   +S++I    C+ K V++A  +++EM+  G  PN+   ++LI  +    +  D 
Sbjct: 193 VQPNVVMYSTIID-GMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDA 251

Query: 317 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           +   N++    I PD      L++   +  K + GK V
Sbjct: 252 IDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTV 289



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/148 (19%), Positives = 62/148 (41%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  L D   +     D   +S+++         D  + +  ++K  G++PNM 
Sbjct: 384 KLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMY 443

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D + +  R      I++++   G +   NTY  ++  +      ++ L++  +M
Sbjct: 444 TYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKM 503

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           K+         Y  ++    D    D+A
Sbjct: 504 KDNSCIPDAVTYEIIIRSLFDKDENDKA 531


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 7/188 (3%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS---LLRAYGR 203
           M+  G  P++++Y  ++D         +V  + KEM   GL PN  TY+S   LL   G+
Sbjct: 136 MEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGK 195

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
              GE  L   REM ++G+     +Y TL+     +G T  A+++F +M++ E   PDS 
Sbjct: 196 VVEGEKVL---REMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEARE-IVPDSI 251

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            FS++I   S  GKV EA+ +FNEM++ GFEP+    T+LI  Y K           N++
Sbjct: 252 AFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQM 311

Query: 324 PELGITPD 331
            ++G+TP+
Sbjct: 312 VQIGLTPN 319



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 96/233 (41%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G V  A  L++    + +  D   ++ LI  Y   G       ++ +M  IG+ PN++T
Sbjct: 263 SGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVT 322

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L D + ++        +  EM   GL  N +TY +++    +A      + +  EMK
Sbjct: 323 YTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMK 382

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E G+      Y TL+      G   +A E+  +M      QP   TF+ ++      GK+
Sbjct: 383 EAGLHPDTITYTTLMDAYYKTGEMVKARELLREM-LDRGLQPTVVTFNVLMNGLCMSGKL 441

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + E +   MLE G  PN     S+++ Y               +   G+ PD
Sbjct: 442 EDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPD 494



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 3/216 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G ++ A  L      +  +++ + ++T++     AGN    + + EEMK  G+ P+ I
Sbjct: 332 KSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTI 391

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D   +     + + + +EM D GL P   T+  L+     +   ED   + + M
Sbjct: 392 TYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWM 451

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+  +   YN+++           + EI+  M  ++   PDS T++ +I    C+ +
Sbjct: 452 LEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGM-CAQGVVPDSNTYNILIK-GHCKAR 509

Query: 278 -VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
            + EA  +  EM+E  F        +LI+ + K ++
Sbjct: 510 NMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKK 545



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 92/199 (46%), Gaps = 8/199 (4%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRID----PNA- 123
           KTG   K+   +     R  +    +++     + M+  L D  R  KW ++    PNA 
Sbjct: 402 KTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAA 461

Query: 124 -FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            +++++K Y    N      +Y  M A GV P+  TYN L+    +A+   +   ++KEM
Sbjct: 462 TYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEM 521

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            +   +   ++Y +L++ + + +   +   ++ EM+ +G+  S  +YN  + M  + G  
Sbjct: 522 VEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNM 581

Query: 243 DEAFEIFEDMKSSENCQPD 261
           +   E+ ++  + E C  D
Sbjct: 582 ETTLELCDE--AIEKCLLD 598


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  L  +     + +D   ++TLI      G  +    +  EM   G++P+  
Sbjct: 503 KTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTF 562

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  M R  +  +   ++ E     L PN  TY  ++  Y +A   E+   ++ E+
Sbjct: 563 TYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL 622

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             + ++L+  +YNTL+      G T EAF++ +DM+ S+   P + T+SS+I      G+
Sbjct: 623 LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR-SKGIPPTTATYSSLIHGMCNIGR 681

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +A+ + +EM + G  PN+   T+LI  Y K  + D VV  L  +    I P+
Sbjct: 682 MEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPN 735



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 2/236 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A  +E ++ +++  R +    D   FST I  +   G  +  + ++ +M+ +GV PN+
Sbjct: 223 VKANELEKSYWVFETMR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNV 281

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYNNL+  + +     +     ++M  +G++    TY+ L+    +     +  SV +E
Sbjct: 282 VTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKE 341

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             EKG   +  +YNTL+     +G   +A  I  DM  S+   P+S T +S+I      G
Sbjct: 342 TLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM-VSKGINPNSVTLNSIIQGFCKIG 400

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           ++ +AE +  EML  GF  N    T++I       R +  +R L  +    + P+D
Sbjct: 401 QMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPND 456



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 108/236 (45%), Gaps = 3/236 (1%)

Query: 80  VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 139
           +NP S   + + +     + G +E A  + +   +  + I+P AF+T+I        F+ 
Sbjct: 382 INPNSVTLNSIIQGF--CKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFES 439

Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
            L    EM    ++PN      L+  + +  +      ++  + + G   N  T  +L+ 
Sbjct: 440 ALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIH 499

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
              +    ++ + + ++M E+G  L    YNTL++ C   G  +E F++  +M   +  +
Sbjct: 500 GLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM-VKQGIE 558

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           PD++T++ +I      GK+ EA  ++NE       PN++    +I  Y KA + ++
Sbjct: 559 PDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 614



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 110/270 (40%), Gaps = 38/270 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G VE A  L+     EK  + PN   ++ LI      GN D      E+M   GV   
Sbjct: 258 KGGKVEDAIQLFFDM--EKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNAT 315

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +ITY+ L++ + + ++  +  ++ KE  + G +PN   Y +L+  Y +     D L +  
Sbjct: 316 LITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRG 375

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-------------------- 255
           +M  KG+  +    N+++     +G  ++A  I E+M S                     
Sbjct: 376 DMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNS 435

Query: 256 --------------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
                          N +P+    ++++      GK S+A  ++  +LE GF  NL    
Sbjct: 436 RFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTN 495

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +LI    K     + VR L ++ E G   D
Sbjct: 496 ALIHGLCKTGNMQEAVRLLKKMLERGFVLD 525



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 116/285 (40%), Gaps = 37/285 (12%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TLI  Y   GN    L +  +M + G+ PN +T N+++    +  +  Q + I
Sbjct: 349 PNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECI 408

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCA 237
            +EM   G S N   + +++         E  L   REM  + M+ +  L  TL+  +C 
Sbjct: 409 LEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCK 468

Query: 238 DVGYTDEA---FEIFED---------------MKSSENCQP---------------DSWT 264
           +  ++D     F + E                +  + N Q                D  T
Sbjct: 469 EGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKIT 528

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++++I+ C   GKV E   +  EM++ G EP+ F    LI    +  + D+ V   N   
Sbjct: 529 YNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK 588

Query: 325 ELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVV 368
              + P+    G +++   +  K E G KL   +   N +L  VV
Sbjct: 589 SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVV 633



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 91/208 (43%), Gaps = 1/208 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  +E    L+     +   ++   ++TLI+ Y   GN      ++++M++ G+ P   
Sbjct: 608 KADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTA 667

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+  M    R    K +  EM   GL PN   Y +L+  Y +    +  ++V +EM
Sbjct: 668 TYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEM 727

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
               +  +   Y  ++   +  G    A ++  +M   +   PD+ T++ +       GK
Sbjct: 728 SSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEM-VGKGIVPDTVTYNVLTNGFCKEGK 786

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           + E   + + M + G   +    T+L+ 
Sbjct: 787 IEEGFKICDYMSQEGLPLDEITYTTLVH 814



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           + + V+R +  KG+  +V     LL+        ++++ +FE M+  +   PD + FS+ 
Sbjct: 195 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMR--QGVSPDVYLFSTA 252

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I      GKV +A  +F +M + G  PN+    +LI    K    D+  R   ++ + G+
Sbjct: 253 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 312


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 141/309 (45%), Gaps = 10/309 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI  +G  G++D  + +++EMK  G+ P    Y  LL    +  +  +   + 
Sbjct: 233 DTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVI 292

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KEM D G +    TY   ++  G+A   +D   V+ +M + G +  V L N+L+ +   V
Sbjct: 293 KEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKV 352

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G  +   ++F  M+S + C+P+  T++++I  +  C+   SEA + F +M   G  P+ F
Sbjct: 353 GRLEVTLKLFRKMESWQ-CKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSF 411

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK--LVEC 356
             + LI  + K  R +  +  L  + E G  P       L+N + +  + E      +E 
Sbjct: 412 TYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLEL 471

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK----AYCNCLIDLCVNLN 412
            E        V  ++++     G    EA +LFN + K   K    AY N L+   V   
Sbjct: 472 KENCGHSSARVYAVMIKHFGKCGRL-SEAVDLFNEMEKLGSKPDVYAY-NALMSGMVRAG 529

Query: 413 LLENACKLL 421
           +++ A  LL
Sbjct: 530 MIDEAQSLL 538



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 119/230 (51%), Gaps = 2/230 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EM   + D  R+    I     S ++KL G A   +  L+V+ ++K    KP   TYN++
Sbjct: 145 EMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSM 204

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  + +     +V  IY EM ++G   P+  TY++L+ A+G+  + +  + ++ EMKE G
Sbjct: 205 ILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENG 264

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +  +  +Y TLL +   +   ++A ++ ++MK  + C    +T++  I      G+V +A
Sbjct: 265 LYPTAKIYTTLLGIYFKLDKVEKALDVIKEMK-DKGCTLTVFTYTEWIKGLGKAGRVDDA 323

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +F +M++ G +P++ ++ SLI   GK  R +  ++   ++      P+
Sbjct: 324 YRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPN 373



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 125/250 (50%), Gaps = 4/250 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG V+ A+ ++     +  + D    ++LI + G  G  +  L ++ +M++   KPN++
Sbjct: 316 KAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVV 375

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++  +   K P  +  + +++M   G++P+  TY+ L+  + +    E  L +  E
Sbjct: 376 TYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEE 435

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCR 275
           M EKG       Y +L+     V   + A E+F ++K  ENC    +  ++ MI      
Sbjct: 436 MDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELK--ENCGHSSARVYAVMIKHFGKC 493

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G++SEA  +FNEM + G +P+++   +L+    +A   D+    L  + E G +PD    
Sbjct: 494 GRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSH 553

Query: 336 GCLLNVMTQT 345
             +LN + +T
Sbjct: 554 NIILNGLART 563



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 113/248 (45%), Gaps = 10/248 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKP 154
           + G +E+   L+ +   E W+  PN   ++T+IK L+          + +E+MK  G+ P
Sbjct: 351 KVGRLEVTLKLFRKM--ESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAP 408

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  TY+ L+D   +  R  +   + +EM + G  P    Y SL+ + G+ +  E    ++
Sbjct: 409 SSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELF 468

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            E+KE     S  +Y  ++      G   EA ++F +M+     +PD + ++++++    
Sbjct: 469 LELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKL-GSKPDVYAYNALMSGMVR 527

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--- 331
            G + EA+++   M E G  P+L     ++    +    D  +    ++    I PD   
Sbjct: 528 AGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVS 587

Query: 332 -DRFCGCL 338
            +   GCL
Sbjct: 588 YNTVLGCL 595



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 2/216 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A  L+D  +          ++TL+ +Y      +  L+V +EMK  G    + 
Sbjct: 246 KLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVF 305

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY   +  +G+A R      ++ +M  +G  P+     SL+   G+    E TL ++R+M
Sbjct: 306 TYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKM 365

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +    + +V  YNT++ A+        EA   FE MK      P S+T+S +I       
Sbjct: 366 ESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGC-GIAPSSFTYSILIDGFCKTN 424

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           ++ +A  +  EM E GF P      SLI   GK +R
Sbjct: 425 RIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKR 460



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 1/213 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   +E A  L +    + +   P A+ +LI   G    ++    ++ E+K      +  
Sbjct: 422 KTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSAR 481

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++   G+  R  +   ++ EM   G  P+   Y +L+    RA   ++  S+ R M
Sbjct: 482 VYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTM 541

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G    +  +N +L   A  G  D A E+F  MKSS   +PD+ ++++++   S  G 
Sbjct: 542 DENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSS-IIKPDAVSYNTVLGCLSHAGL 600

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
             EA  +  EM   GFE N    TS+++  GK 
Sbjct: 601 FEEAAKLMREMNLKGFEYNNITYTSILEAVGKV 633



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 13/184 (7%)

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-LLRAYGRARYGEDTLSVYREMKEKG 221
           LD  G     W  KTI ++M  +      + Y S +++  G+A+     LSV+ ++K + 
Sbjct: 137 LDEAGFYGEMW--KTI-QDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRK 193

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            + + T YN+++ M    G+ ++  EI+ +M +  NC PD+ T+S++I+     G    A
Sbjct: 194 CKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSA 253

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             +F+EM E G  P   + T+L+  Y K    D V +AL+ + E+     D+  GC L V
Sbjct: 254 IRLFDEMKENGLYPTAKIYTTLLGIYFK---LDKVEKALDVIKEM----KDK--GCTLTV 304

Query: 342 MTQT 345
            T T
Sbjct: 305 FTYT 308



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            ++ +IK +G  G     ++++ EM+ +G KP++  YN L+  M RA    + +++ + M
Sbjct: 482 VYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTM 541

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            +NG SP+ N++  +L    R    +  + ++ +MK   ++     YNT+L   +  G  
Sbjct: 542 DENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLF 601

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           +EA ++  +M    N +   +   +  +I    GKV E  A
Sbjct: 602 EEAAKLMREM----NLKGFEYNNITYTSILEAVGKVDEDRA 638


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 130/261 (49%), Gaps = 3/261 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A+ +Y++  +   R +   +++LIK +   G  +    +Y++M      P++ 
Sbjct: 459 KVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQ 518

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D M +A  P + + +++E+      P+  +Y+ L+    +A +  +T  ++  M
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSM 578

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G  L    YN ++      G  ++A+++ E+MK ++  +P   T+ S+I   +   +
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK-TKGFEPTVVTYGSVIDGLAKIDR 637

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F E      E N+ + +SLI  +GK  R D+    L  L + G+TP+      
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNS 697

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           LL+ + +   EE+ + + C +
Sbjct: 698 LLDALVKA--EEINEALVCFQ 716



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 3/240 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G V+ A  L D  ++     D   ++  I  +G  G  D     + E++A G+KP+ 
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDE 273

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++  + +A R  +   +++ +  N   P    Y +++  YG A   ++  S+   
Sbjct: 274 VTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + KG   SV  YN +L     +G  DEA  +FE+MK  ++  P+  T++ +I +    G
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMK--KDAAPNLSTYNILIDMLCRAG 391

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 335
           K+  A  + + M +AG  PN+  +  ++    K+Q+ D+      ++     TPD+  FC
Sbjct: 392 KLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFC 451



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 110/235 (46%), Gaps = 3/235 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG     + L+   + +   +D  A++ +I  +   G  +    + EEMK  G +P ++
Sbjct: 564 KAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVV 623

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY +++D + +  R  +   +++E     +  N   Y+SL+  +G+    ++   +  E+
Sbjct: 624 TYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEEL 683

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
            +KG+  +V  +N+LL         +EA   F+ MK  + C P+  T+  +I  +C  R 
Sbjct: 684 MQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELK-CTPNQVTYGILINGLCKVR- 741

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           K ++A   + EM + G +P+    T++I    KA    +     +R    G  PD
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPD 796



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 1/190 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A++++  ++   +S+LI  +G  G  D    + EE+   G+ PN+ T+N+LLD
Sbjct: 641 AYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLD 700

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M +   +PN  TY  L+    + R        ++EM+++GM+ 
Sbjct: 701 ALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKP 760

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S   Y T+++  A  G   EA  +F+  K++    PDS  +++MI   S   +  +A ++
Sbjct: 761 STISYTTMISGLAKAGNIAEAGALFDRFKANGGV-PDSACYNAMIEGLSNGNRAMDAFSL 819

Query: 285 FNEMLEAGFE 294
           F E    G  
Sbjct: 820 FEETRRRGLH 829



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 1/203 (0%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P ++++L+ +     NFD    +  EM   G  P++ T   ++ +  +A +  +   + +
Sbjct: 98  PESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQ 157

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
            M      P ++ Y +L+ A+    + +  L+++++M+E G + +V L+ TL+   A  G
Sbjct: 158 NMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEG 217

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             D A  + ++MKSS +   D   ++  I      GKV  A   F+E+   G +P+    
Sbjct: 218 RVDSALSLLDEMKSS-SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTY 276

Query: 301 TSLIQCYGKAQRTDDVVRALNRL 323
           TS+I    KA R D+ V     L
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHL 299



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 100/227 (44%), Gaps = 1/227 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A  +   F +    R  K+R   +A++TLI  +    + D  L ++++M+ +G +P +
Sbjct: 144 VKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             +  L+    +  R     ++  EM  + L  +   Y   + ++G+    +     + E
Sbjct: 204 HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++  G++     Y +++ +       DEA E+FE ++ +    P ++ +++MI      G
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV-PCTYAYNTMIMGYGSAG 322

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           K  EA ++       G  P++     ++ C  K  + D+ +R    +
Sbjct: 323 KFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEM 369



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +  LI        F+     ++EM+  G+KP+ I+Y  ++  + +A    +   +
Sbjct: 725 PNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGAL 784

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTL 232
           +     NG  P+   Y +++          D  S++ E + +G+ +     V L +TL
Sbjct: 785 FDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTL 842


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 128/260 (49%), Gaps = 1/260 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G++EMA  L+ + +   +  D   +++LI  +G  G  D C+ ++E+MK     P
Sbjct: 65  YLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDP 124

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ITYN L++   + +R  +      EM  NGL PN  TY++ + A+ +    ++ +  +
Sbjct: 125 DVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFF 184

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M+   +  +   Y +L+      G   EA ++ E++  +   + +  T+++++     
Sbjct: 185 VDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA-GIKLNVVTYTALLDGLCE 243

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G++ EAE +F  ML AG  PN    T+L+  + KA+  +     L  + E  I PD   
Sbjct: 244 EGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLL 303

Query: 335 CGCLLNVMTQTPKEELGKLV 354
            G +L  +    + E  KL+
Sbjct: 304 YGTILWGLCNESRLEEAKLL 323



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 12/232 (5%)

Query: 116 KWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K+R+   P + + L+      G  D     +++M A G+K ++ TYN ++D + +     
Sbjct: 14  KFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLE 73

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             ++++ +M + G +P+  TY SL+  +G+    ++ + ++ +MK+      V  YN L+
Sbjct: 74  MARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALI 133

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                     +AFE   +MK++   +P+  T+S+ I      G + EA   F +M     
Sbjct: 134 NCFCKFERMPKAFEFLHEMKAN-GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVAL 192

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
            PN F  TSLI    KA    + ++ +  + + GI          LNV+T T
Sbjct: 193 TPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIK---------LNVVTYT 235



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 153/367 (41%), Gaps = 80/367 (21%)

Query: 74  PKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFS-- 125
           PK++ +++       K    +Y T      + G ++ A   +   R  +  + PN F+  
Sbjct: 143 PKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMR--RVALTPNEFTYT 200

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
           +LI     AGN    L + EE+   G+K N++TY  LLD +    R  + + +++ M + 
Sbjct: 201 SLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNA 260

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADV----- 239
           G++PN  TY +L+  + +A+  E    + +EMKEK ++  + LY T+L  +C +      
Sbjct: 261 GVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEA 320

Query: 240 -----------------------------GYTDEAFEIFEDMKS------SENC------ 258
                                        G   EA  + E+M          NC      
Sbjct: 321 KLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKK 380

Query: 259 ----------QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
                      PD   ++++I      G + EA  + + M+E G E +L   T+LI  +G
Sbjct: 381 LFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALI--WG 438

Query: 309 KAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN--SK 363
            +  +  V +A N L E+   G+ PD+    CL+          LGK+ E +E  N  +K
Sbjct: 439 LSH-SGQVQKARNLLDEMIGKGVLPDEVVYMCLIK-----KYYALGKVDEALELQNEMAK 492

Query: 364 LGYVVKL 370
            G +  L
Sbjct: 493 RGMITGL 499


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 5/235 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           AGN+EM    ++    E+ R  PN   ++T+I  Y      D    +   M   G++PN+
Sbjct: 216 AGNLEMGLRFFEEM--ERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNL 273

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN +++ + R  R  +   +  EM   G +P+  TY +L+  Y +       L ++ E
Sbjct: 274 LTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSE 333

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G+   V  Y +L+      G  + A E F+ M      +P+  T++S+I   S +G
Sbjct: 334 MLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMH-VRGLRPNGVTYTSLINGFSQKG 392

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + EA  +++EM+ +GF P +    +L+  +  + R ++ +  L  +   G++PD
Sbjct: 393 FMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPD 447



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 120/251 (47%), Gaps = 3/251 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN   A  L+          D   +++LI     AGN +  +  +++M   G++PN +
Sbjct: 320 KVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGV 379

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY +L++   +     +   I+ EM  +G  P   TY +LL  +  +   E+ + + R M
Sbjct: 380 TYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGM 439

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
           + KG+   V  Y+T++A        D AF++  +M   +   PD+ T+SS+I  +C  R 
Sbjct: 440 EGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEM-VEKGVSPDAITYSSLIQGLCEQR- 497

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +++EA  +F EML     P+ F  TSLI  Y K    ++ +   + + + G  PD     
Sbjct: 498 RLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYN 557

Query: 337 CLLNVMTQTPK 347
            L+N + +  +
Sbjct: 558 VLINGLNKQAR 568



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +E   G+      + +  D   ++TL+  Y   GNF   L ++ EM   G+ P+++
Sbjct: 285 RVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVV 344

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY +L++TM +A    +    + +M   GL PN  TY SL+  + +  + ++   ++ EM
Sbjct: 345 TYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEM 404

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   ++  YN LL      G  +EA  +   M+  +   PD  ++S++I       +
Sbjct: 405 IRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGME-GKGLSPDVVSYSTIIAGFCRYQE 463

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  A  M  EM+E G  P+    +SLIQ   + +R ++       +    + PD+
Sbjct: 464 LDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDE 518



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 1/218 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ LI+ +  AGN +  L  +EEM+     PN++TYN ++    + KR  +   + + M
Sbjct: 205 SYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM 264

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              GL PN  TY  ++    R    E+T  V  EM  KG       YNTL+     VG  
Sbjct: 265 GLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNF 324

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +A  +  +M  +    PD  T++S+I      G ++ A   F++M   G  PN    TS
Sbjct: 325 HQALVLHSEMLRN-GLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTS 383

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           LI  + +    D+  R  + +   G  P       LLN
Sbjct: 384 LINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLN 421



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 2/206 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLR 199
           LN+ +  K  G  P +++YN +LD++ R ++P    + +Y+EM  +G+S N  +Y  L+R
Sbjct: 152 LNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIR 211

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
            +  A   E  L  + EM+      +V  YNT++     +   DEAF++   M   E  +
Sbjct: 212 GFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM-GLEGLE 270

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           P+  T++ +I      G++ E   +  EM   GF P+     +L+  Y K       +  
Sbjct: 271 PNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVL 330

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQT 345
            + +   G+ PD      L+N M + 
Sbjct: 331 HSEMLRNGLPPDVVTYTSLINTMCKA 356



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 16/247 (6%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G +E A GL      +    D  ++ST+I  +      D    +  EM   GV P+ IT
Sbjct: 426 SGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAIT 485

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y++L+  +   +R  +   +++EM +  L P+  TY SL+  Y +     + L+++ EM 
Sbjct: 486 YSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMI 545

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS----- 273
           +KG       YN L+        T EA  +   +   E+  P+  T+ ++I  CS     
Sbjct: 546 KKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESI-PNGITYDTLIESCSDIEFK 604

Query: 274 ----------CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
                      +G ++EA+ +F  M++   +PN  V   +I  + +        +    +
Sbjct: 605 SVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEM 664

Query: 324 PELGITP 330
            + G  P
Sbjct: 665 VDFGFIP 671



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 77/264 (29%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+  A   +D+      R +   +++LI  +   G  D    +++EM   G  P ++
Sbjct: 355 KAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIV 414

Query: 158 TYNNLLD---TMGRAK-----------------------------------RPWQVKTIY 179
           TYN LL+     GR +                                   R +Q+    
Sbjct: 415 TYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNA-- 472

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM + G+SP+  TY+SL++     R   +   +++EM  K +                 
Sbjct: 473 -EMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSL----------------- 514

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
                               PD +T++S+I      G ++EA  + +EM++ GF P+   
Sbjct: 515 -------------------LPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVT 555

Query: 300 LTSLIQCYGKAQRTDDVVRALNRL 323
              LI    K  RT +  R L +L
Sbjct: 556 YNVLINGLNKQARTREAKRLLLKL 579



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 52/134 (38%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           I+  +   LIK +   G  +    V+E M     KPN   YN ++    R     +   +
Sbjct: 601 IEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKL 660

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           YKEM D G  P+  T  +L++A       E    V R++          L   L+ +   
Sbjct: 661 YKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQINHK 720

Query: 239 VGYTDEAFEIFEDM 252
            G  D  F +  +M
Sbjct: 721 EGNIDAVFNLLTEM 734


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 119/230 (51%), Gaps = 4/230 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A  +++R + ++ +     ++ LI LYG A      L V+ EM++   KPN+ 
Sbjct: 250 KGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNIC 309

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+  L++   R     + + I++++ + GL P+   Y +L+ AY RA +      ++  M
Sbjct: 310 TFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLM 369

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN ++      G  ++A  +FE MK      P   +   +++  S  GK
Sbjct: 370 QHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRL-GITPTMKSHMLLLSAYSRAGK 428

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLP 324
           V++ E + N+M ++G +P+ FVL S++  YG+    ++ ++V+ A+ + P
Sbjct: 429 VAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGP 478



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 129/271 (47%), Gaps = 7/271 (2%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI 150
           K+Y T +G +E A  ++   R  K+   P+A  ++  I      G+    + ++E MK  
Sbjct: 211 KAYCT-SGLLEKAEAVFAEMR--KYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRD 267

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
             +P+  TY  L++  G+A + +    ++ EM      PN  T+ +L+ A+ R    E  
Sbjct: 268 RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKA 327

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             ++ +++E G++  V  YN L+   +  G+   A EIF  M+    C+PD  +++ M+ 
Sbjct: 328 EEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM-GCEPDRASYNIMVD 386

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G   +A+A+F  M   G  P +     L+  Y +A +       +N++ + GI P
Sbjct: 387 AYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 446

Query: 331 DDRFCGCLLNVMTQTPK-EELGKLVECVEKS 360
           D      +LN+  +  + E++ +++  +EK 
Sbjct: 447 DTFVLNSMLNLYGRLGQFEKMEEVLTAMEKG 477



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 114/240 (47%), Gaps = 6/240 (2%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L+K Y T+G  +    V+ EM+  G  P+ + YN  +D + +     +   I++ 
Sbjct: 204 DTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFER 263

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +   P+  TY  L+  YG+A      L V+ EM+ +  + ++  +  L+   A  G 
Sbjct: 264 MKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGL 323

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A EIFE ++ +   +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 324 CEKAEEIFEQLQEA-GLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYN 382

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
            ++  YG+A   +D       +  LGITP  +    LL+  ++      GK+ +C E  N
Sbjct: 383 IMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRA-----GKVAKCEEIVN 437



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 114/237 (48%), Gaps = 7/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A    MA  ++   R++K + +   F+ L+  +   G  +    ++E+++  G++P++ 
Sbjct: 285 KASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVY 344

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L++   RA  P+    I+  M   G  P+  +Y  ++ AYGRA   ED  +V+  M
Sbjct: 345 AYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVM 404

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+  ++  +  LL+  +  G   +  EI   M  S   +PD++  +SM+ +    G+
Sbjct: 405 KRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKS-GIKPDTFVLNSMLNLYGRLGQ 463

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLPELGITPD 331
             + E +   M +  +  ++     LI  YG+A    R +++ R+   LP   + PD
Sbjct: 464 FEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRS---LPARNLIPD 517



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++I YN L+D  G+     + ++ Y E+ +    P  +TYA LL+AY  +   E   +V
Sbjct: 166 PDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAV 225

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + EM++ G   S  +YN  +      G T +A EIFE MK  + CQP + T++ +I +  
Sbjct: 226 FAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK-RDRCQPSTATYTMLINLYG 284

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              K   A  +F+EM     +PN+   T+L+  + +    +       +L E G+ PD
Sbjct: 285 KASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPD 342



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 4/229 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG    A  ++   ++     D  +++ ++  YG AG  +    V+E MK +G+ P M
Sbjct: 354 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTM 413

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    RA +  + + I  +M  +G+ P+     S+L  YGR    E    V   
Sbjct: 414 KSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTA 473

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++      ++ YN L+ +    G+     E+F  +  + N  PD  T++S I   S R 
Sbjct: 474 MEKGPYPADISTYNILINIYGRAGFFARMEELFRSL-PARNLIPDVVTWTSRIGAYSRRK 532

Query: 277 KVSEAEAMFNEMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNR 322
           + +    +F EM++AG  P+     VL S      + Q    V+R +++
Sbjct: 533 QYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHK 581


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 11/223 (4%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TL+  +  +G  +    V+ EM+  GV PN+ TY  ++D M RA +  + + +  +M 
Sbjct: 252 YTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMI 311

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT- 242
           D+G  PN  T+ +++RA+ +A   E  L V+ +M++ G +  +  YN L+      G + 
Sbjct: 312 DSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSN 371

Query: 243 -DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D A ++   M  ++ C PD  TF+ M+ +    G V+ A  ++  M E   +PN+    
Sbjct: 372 LDAAMKMLTRM-IAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYN 430

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 336
            L++ +   +  D V+R    +   G+ P+        + FCG
Sbjct: 431 LLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCG 473



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 1/153 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N++ A  +  R   +    D + F+ ++KL    GN +    +YE M+ +  KPN++TYN
Sbjct: 371 NLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYN 430

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYREMKE 219
            L+      K    V  I K+M   G+ PN NTYA+L+ A+ GR  +    +++   ++E
Sbjct: 431 LLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEE 490

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           K ++ +  +Y+ +LA+    G      E+ E M
Sbjct: 491 KALKPTKPVYDMVLALLRKAGQLRRHEELVEMM 523



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 83/199 (41%), Gaps = 2/199 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG--NFDGCLNVYEEMKAIGVKP 154
            +AG  E    ++++ R      D   ++ L++ +   G  N D  + +   M A G  P
Sbjct: 330 VKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIP 389

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  T+N +L  +         + +Y+ M +    PN  TY  L+R +   +  +  L + 
Sbjct: 390 DCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIK 449

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           ++M  +G++ +V  Y  L+      G    A     +M   +  +P    +  ++ +   
Sbjct: 450 KDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALKPTKPVYDMVLALLRK 509

Query: 275 RGKVSEAEAMFNEMLEAGF 293
            G++   E +   M++ GF
Sbjct: 510 AGQLRRHEELVEMMVDRGF 528



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 5/175 (2%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  ++D + +       + +  EM +  +  +     +L+R Y RA    +   ++R M+
Sbjct: 147 YAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFRRME 206

Query: 219 EKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           E G       TL  +LL   +      EA  +F+  KS     PD   +++++      G
Sbjct: 207 EYGAGAPDPATL-ASLLGALSKKRLASEAQAMFDSYKSV--FTPDVVLYTTLVHAWCRSG 263

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +++EAE +F EM +AG  PN++  T++I    +A +       L ++ + G  P+
Sbjct: 264 RLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPN 318


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 4/228 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+++I  Y  AG  +  + VY +M A G+ PN +TYN L++  G+         +
Sbjct: 320 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 379

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y++MT     P+  T++SL+  Y R    +D L ++ +M +  +Q +V  ++ ++     
Sbjct: 380 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 439

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNL 297
              +DEA  +  ++    +  P ++ ++ +I  +C C GKV EA  +   M E G  P+ 
Sbjct: 440 QNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKC-GKVDEANLIRKGMEEKGCRPDK 498

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +  T LI  Y    R  + +   + + E G +PD     C ++ + + 
Sbjct: 499 YTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKA 546



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 96/250 (38%), Gaps = 10/250 (4%)

Query: 98  RAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           R+G    A  L+D+      +  D    S L+     A   D    +  +    G +   
Sbjct: 156 RSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEA 215

Query: 157 ITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             YN L+ ++ GR +    V    + + D   SP+  ++  +++   R    +  L +  
Sbjct: 216 YAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVE 275

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M E G       +N L+             E+   ++    C P+  TF+S+I+     
Sbjct: 276 RMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA 335

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD---- 331
           GK+ +A A++N+M+ +G  PN      LI  YGK       V    ++  L   PD    
Sbjct: 336 GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTF 395

Query: 332 ----DRFCGC 337
               D +C C
Sbjct: 396 SSLIDGYCRC 405


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 128/257 (49%), Gaps = 8/257 (3%)

Query: 105 AFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           A  +  R   E  R  P+  +F+T+I  +   G      N+  EM   GV+P+++TYN++
Sbjct: 246 ALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSI 305

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +D + +A+   + + + ++M D G+ P+  TY +++  Y  + + +++  ++R+M  KG+
Sbjct: 306 VDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGL 365

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
              +  +N+ ++     G + +A EIF+ M +++   PD  ++S ++   +  G+ ++  
Sbjct: 366 IPGIVTFNSFMSSLCKHGRSKDAEEIFQYM-TTKGHMPDLVSYSILLHGYATEGRFADMN 424

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            +F+ M + G   N      LI  + K    D+ +     +   G+ PD      L++  
Sbjct: 425 NLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAF 484

Query: 343 TQTPKEELGKLVECVEK 359
            +     +G+L + +EK
Sbjct: 485 CR-----MGRLADAMEK 496



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +E AFG+ D   +     D   ++TL+  Y  +G  D  L ++ EM    VKP  +T
Sbjct: 593 VGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVT 652

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ +LD +  A R    K ++ EM D+G + + +TY  LL+   R    ++ ++++ ++ 
Sbjct: 653 YSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLG 712

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
               +  +T+ NT++     V   +EA ++F  + S+    P+  T+  MI      G V
Sbjct: 713 AMDCKFDITILNTVINALYKVRRREEANDLFAAI-STSGLVPNVSTYGVMIHNLLKEGSV 771

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            EA+ MF+ M ++G  P+  +L  +I+      +  D+V+A
Sbjct: 772 EEADTMFSSMEKSGCAPSSRLLNDIIRML---LQKGDIVKA 809



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++S L+  Y T G F    N++  M   G+  N   +N L+    +     +   ++
Sbjct: 403 DLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVF 462

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM   G+ P+  TY++L+ A+ R     D +  + +M   G++ +  +Y++L+      
Sbjct: 463 TEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMH 522

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A E+  +M S    +P+   FSS+I      G+V +A  +FN ++  G  P +  
Sbjct: 523 GDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVT 582

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SLI  Y    + +     L+ +  +GI PD
Sbjct: 583 FNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPD 614



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 137/343 (39%), Gaps = 48/343 (13%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           S   + G ++ A  ++   + +  R D   +STLI  +   G     +  + +M +IG++
Sbjct: 447 SAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLE 506

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-------------------------- 187
           PN + Y++L+          + K +  EM   G+                          
Sbjct: 507 PNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHD 566

Query: 188 ----------SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
                      P   T+ SL+  Y      E    V   M   G++  V  YNTL++   
Sbjct: 567 VFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYC 626

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  D+   +F +M   +  +P + T+S ++      G+ S A+ MF+EM+++G   ++
Sbjct: 627 KSGKIDDGLILFREMLH-KKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDI 685

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PKEELGKLVEC 356
                L++   +   TD+ +   ++L  +    D      ++N + +   +EE   L   
Sbjct: 686 DTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAA 745

Query: 357 VEKSN-----SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
           +  S      S  G ++  LL+E  +E     EA  +F+S+ K
Sbjct: 746 ISTSGLVPNVSTYGVMIHNLLKEGSVE-----EADTMFSSMEK 783



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 104/245 (42%), Gaps = 36/245 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  L +    +    D   +++++     A   D    V  +M   GV+P+ +
Sbjct: 276 KQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGL 335

Query: 158 TY-----------------------------------NNLLDTMGRAKRPWQVKTIYKEM 182
           TY                                   N+ + ++ +  R    + I++ M
Sbjct: 336 TYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYM 395

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           T  G  P+  +Y+ LL  Y       D  +++  M +KG+  +   +N L++  A  G  
Sbjct: 396 TTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMM 455

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           DEA  +F +M+  +  +PD  T+S++I+     G++++A   F++M+  G EPN  V  S
Sbjct: 456 DEAMLVFTEMQ-GQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHS 514

Query: 303 LIQCY 307
           LI  +
Sbjct: 515 LIHGF 519



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 90/189 (47%), Gaps = 2/189 (1%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           +++ M   G  P++++Y+ LL       R   +  ++  M D G+  N + +  L+ A+ 
Sbjct: 391 IFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHA 450

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +    ++ + V+ EM+ +G++  V  Y+TL++    +G   +A E F  M S    +P++
Sbjct: 451 KRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISI-GLEPNT 509

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             + S+I      G + +A+ + +EM+  G   PN+   +S+I       R  D     N
Sbjct: 510 VVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFN 569

Query: 322 RLPELGITP 330
            +  +G  P
Sbjct: 570 LVIHIGDRP 578



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 51/249 (20%)

Query: 134 AGNF--DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA-------KRPWQVKTIYKEMTD 184
           AG F  D   ++++E+   G   +    N  L  + RA         P  V  ++  +  
Sbjct: 85  AGTFSTDDAHHLFDELLRQGTPVHNPALNGFLAALARAPDSVSCSNGPALVLALFNRICR 144

Query: 185 NGLSP-----NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
               P     + +TY  L+    RAR  +   + +  +   G++      NT L      
Sbjct: 145 EEAGPRVAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHA 204

Query: 240 GYTDEAFEIF------------------------EDMKSSE-------------NCQPDS 262
             TDEA ++                          D +S E              C PD 
Sbjct: 205 KRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDV 264

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            +F+++I     +G+VS+A  + NEM++ G EP++    S++    KA+  D     L +
Sbjct: 265 VSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQ 324

Query: 323 LPELGITPD 331
           + + G+ PD
Sbjct: 325 MVDKGVEPD 333


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 121/246 (49%), Gaps = 8/246 (3%)

Query: 121 PNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  S  I + G  T G  D   N++ EM   G++PN++TY  ++D + +A+   + + +
Sbjct: 201 PNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGV 260

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +++M D G+ P+ +TY  L+  Y      ++ + +  EM   G++     Y +LL    +
Sbjct: 261 FQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCN 320

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA  +F+ M   +  +P+   +  +I   + +G +SE   + N M+E G  P+  
Sbjct: 321 NGRCREARFLFDSM-IRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHH 379

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           +   +   Y K    D+ +   N++ + G++PD    G L++ + +     LG++ + V 
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCK-----LGRVDDAVL 434

Query: 359 KSNSKL 364
           K N  +
Sbjct: 435 KFNQMM 440



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 2/271 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+ A G++ +  ++  + D + ++ LI  Y + G +   + + EEM A G+KP+  
Sbjct: 250 KAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCY 309

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY +LL+ +    R  + + ++  M   G+ PN   Y  L+  Y       +   +   M
Sbjct: 310 TYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLM 369

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+     ++N +    A     DEA  IF  MK  +   PD   + ++I      G+
Sbjct: 370 VENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMK-QQGLSPDVVNYGALIDALCKLGR 428

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A   FN+M+  G  PN+FV  SL+       + +        +   GI PD  F   
Sbjct: 429 VDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNT 488

Query: 338 LL-NVMTQTPKEELGKLVECVEKSNSKLGYV 367
           +L N+ T+    +  +L++ +E+  ++ G +
Sbjct: 489 ILCNLCTKGQVMKAQRLIDLMERVGTRPGVI 519



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 117/273 (42%), Gaps = 40/273 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV-YEEMKAIGVKPNM 156
           R G +E  F  +       WR++    + L+K    A      +++  + M  +G  P++
Sbjct: 106 RMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDV 165

Query: 157 ITYNNLL--------------------DTMGRAKRPWQVK------------------TI 178
           ++YN LL                    D+ GR+  P  V                    +
Sbjct: 166 VSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNL 225

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + EM D G+ PN  TY +++    +A+  +    V+++M +KG++     YN L+     
Sbjct: 226 FLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLS 285

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +G   E   + E+M S+   +PD +T+ S++      G+  EA  +F+ M+  G +PN+ 
Sbjct: 286 IGKWKEVVRMLEEM-SAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVA 344

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   LI  Y       ++   LN + E G++PD
Sbjct: 345 IYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 9/244 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V  A  L D       R    +++TLI  +   G  D      + M ++G+KP+  TY
Sbjct: 497 GQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTY 556

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL    RA R      +++EM  NG++P   TY+++L      R   +   +Y  M  
Sbjct: 557 NTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMIT 616

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G Q ++ +YN +L   +     DEAF++F+ +  S++ Q +  TF+ MI      G+  
Sbjct: 617 SGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSL-CSKDFQLEITTFNIMIGALFKSGRNE 675

Query: 280 EAEAMFNEMLEAGFEPNLF----VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           +A  +F  +   G  P++F    +  +LI+  G  +  DD+  A+ +    G TP+ R  
Sbjct: 676 DAMHLFATISSYGLVPDVFTYCLIAENLIE-EGYLEEFDDLFSAMEK---SGTTPNSRML 731

Query: 336 GCLL 339
             L+
Sbjct: 732 NALV 735



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 123/282 (43%), Gaps = 9/282 (3%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A   Y    N+  R D   F+T++    T G       + + M+ +G +P +I+Y  L
Sbjct: 465 EKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTL 524

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +       R  +       M   GL P+  TY +LL  Y RA   +D   V+REM   G+
Sbjct: 525 IGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGI 584

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
              V  Y+T+L          EA E++ +M +S   Q + W ++ ++   S    V EA 
Sbjct: 585 TPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGK-QWNIWIYNIILNGLSKNNCVDEAF 643

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL--N 340
            +F  +    F+  +     +I    K+ R +D +     +   G+ P D F  CL+  N
Sbjct: 644 KLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVP-DVFTYCLIAEN 702

Query: 341 VMTQTPKEELGKLVECVEKS----NSK-LGYVVKLLLEEQDI 377
           ++ +   EE   L   +EKS    NS+ L  +V+ LL   DI
Sbjct: 703 LIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDI 744



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 103/216 (47%), Gaps = 3/216 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN   +  LI  Y T G      ++   M   G+ P+   +N +     +     +  
Sbjct: 339 IKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAM 398

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I+ +M   GLSP+   Y +L+ A  +    +D +  + +M  +G+  ++ ++N+L+   
Sbjct: 399 HIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGL 458

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             V   ++A E + +M  ++  +PD   F++++     +G+V +A+ + + M   G  P 
Sbjct: 459 CTVDKWEKAKEFYFEML-NQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPG 517

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +   T+LI  +    R D+  ++L+ +  +G+ PD+
Sbjct: 518 VISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDE 553



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 108/276 (39%), Gaps = 41/276 (14%)

Query: 70  TGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNE---KWRIDPNAFST 126
           T + P S I  N      S++  +   T     E+   L++R   E   K   DP  +S 
Sbjct: 42  THARPASVIAFNHLLTAVSRVSGRRSSTTES--ELVVSLFNRMIRECTIKVTPDPCTYSI 99

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
           LI  +   G  +     +  +   G + N I  N LL  +  AKR  +   I        
Sbjct: 100 LIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDI-------- 151

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
                                     + + M E G    V  YNTLL    +    +EA 
Sbjct: 152 --------------------------LVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEAL 185

Query: 247 EIFEDMKSSE--NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           E+   M  S+  +C P+  +++ +I      G+V +A  +F EM++ G +PN+   T++I
Sbjct: 186 ELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVI 245

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
               KAQ  D       ++ + G+ PD+    CL++
Sbjct: 246 DGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIH 281


>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           lycioides]
          Length = 429

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   +  N++TYN+++   G+     
Sbjct: 179 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHE 238

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 239 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 298

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++KS +N   D     + I I +  G++ EA  +F + ++AG 
Sbjct: 299 VAYERAGLVAHAKRLLHELKSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGE 353

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 354 VKDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 400



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 10  DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 69

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 70  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 129

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 130 KKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 188

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 189 YNTLLRVYGDAE 200



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 25  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 84

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 85  NAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMRE 144

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 145 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 204

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N   +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 205 AIHLFRLMQ-RKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 263

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 264 SIWGKVGKLDRAAMLFQKLRSSGVEID 290



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM    LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   + 
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 60

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    
Sbjct: 61  DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 119

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 120 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 163



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 83/179 (46%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++G  G  D    +++++++ GV+ + + Y  ++    RA      K
Sbjct: 252 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAK 311

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 312 RLLHELKSPDNIPR-DTAIHILAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLF 367

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+F+ M+      PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 368 SKYKKYANVVEVFDKMRGL-GYFPDS---NVIALVLNAYGKLHEFDKANGVYMEMQEVG 422


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  L  +     + +D   ++TLI      G  +    +  EM   G++P+  
Sbjct: 570 KTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTF 629

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  M R  +  +   ++ E     L PN  TY  ++  Y +A   E+   ++ E+
Sbjct: 630 TYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL 689

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             + ++L+  +YNTL+      G T EAF++ +DM+ S+   P + T+SS+I      G+
Sbjct: 690 LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR-SKGIPPTTATYSSLIHGMCNIGR 748

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +A+ + +EM + G  PN+   T+LI  Y K  + D VV  L  +    I P+
Sbjct: 749 MEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPN 802



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 2/236 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A  +E ++ +++  R +    D   FST I  +   G  +  + ++ +M+ +GV PN+
Sbjct: 290 VKANELEKSYWVFETMR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNV 348

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYNNL+  + +     +     ++M  +G++    TY+ L+    +     +  SV +E
Sbjct: 349 VTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKE 408

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             EKG   +  +YNTL+     +G   +A  I  DM  S+   P+S T +S+I      G
Sbjct: 409 TLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM-VSKGINPNSVTLNSIIQGFCKIG 467

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           ++ +AE +  EML  GF  N    T++I       R +  +R L  +    + P+D
Sbjct: 468 QMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPND 523



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 1/218 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  + +   +  + I+P AF+T+I        F+  L    EM    ++PN  
Sbjct: 465 KIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDG 524

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
               L+  + +  +      ++  + + G   N  T  +L+    +    ++ + + ++M
Sbjct: 525 LLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKM 584

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E+G  L    YNTL++ C   G  +E F++  +M   +  +PD++T++ +I      GK
Sbjct: 585 LERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM-VKQGIEPDTFTYNLLIHGMCRIGK 643

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           + EA  ++NE       PN++    +I  Y KA + ++
Sbjct: 644 LDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 681



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 110/270 (40%), Gaps = 38/270 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G VE A  L+     EK  + PN   ++ LI      GN D      E+M   GV   
Sbjct: 325 KGGKVEDAIQLFFDM--EKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNAT 382

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +ITY+ L++ + + ++  +  ++ KE  + G +PN   Y +L+  Y +     D L +  
Sbjct: 383 LITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRG 442

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-------------------- 255
           +M  KG+  +    N+++     +G  ++A  I E+M S                     
Sbjct: 443 DMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNS 502

Query: 256 --------------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
                          N +P+    ++++      GK S+A  ++  +LE GF  NL    
Sbjct: 503 RFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTN 562

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +LI    K     + VR L ++ E G   D
Sbjct: 563 ALIHGLCKTGNMQEAVRLLKKMLERGFVLD 592



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 116/285 (40%), Gaps = 37/285 (12%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TLI  Y   GN    L +  +M + G+ PN +T N+++    +  +  Q + I
Sbjct: 416 PNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECI 475

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCA 237
            +EM   G S N   + +++         E  L   REM  + M+ +  L  TL+  +C 
Sbjct: 476 LEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCK 535

Query: 238 DVGYTDEA---FEIFED---------------MKSSENCQP---------------DSWT 264
           +  ++D     F + E                +  + N Q                D  T
Sbjct: 536 EGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKIT 595

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++++I+ C   GKV E   +  EM++ G EP+ F    LI    +  + D+ V   N   
Sbjct: 596 YNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK 655

Query: 325 ELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVV 368
              + P+    G +++   +  K E G KL   +   N +L  VV
Sbjct: 656 SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVV 700



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 3/203 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  +E    L+     +   ++   ++TLI+ Y   GN      ++++M++ G+ P   
Sbjct: 675 KADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTA 734

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+  M    R    K +  EM   GL PN   Y +L+  Y +    +  ++V +EM
Sbjct: 735 TYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEM 794

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
               +  +   Y  ++   +  G    A ++  +M   +   PD+ T++ +       GK
Sbjct: 795 SSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEM-VGKGIVPDTVTYNVLTNGFCKEGK 853

Query: 278 VSEAEAMFNEMLEAGFEPNLFVL 300
           + E + +  +    GF   LF++
Sbjct: 854 IEEGKLLAED--GVGFNSPLFLI 874



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
            + + V+R +  KG+  +V     LL+        ++++ +FE M+  +   PD + FS+
Sbjct: 261 RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMR--QGVSPDVYLFST 318

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            I      GKV +A  +F +M + G  PN+    +LI    K    D+  R   ++ + G
Sbjct: 319 AINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDG 378

Query: 328 I 328
           +
Sbjct: 379 V 379


>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 11/247 (4%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+  F + ++  +     +  +F+TLI  Y   G F   L V   M   GV+PN++T+
Sbjct: 239 GEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTF 298

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++   + ++  +   ++ EM    + P+  TY +LL  YG+    E  + VY EM  
Sbjct: 299 NTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMR 358

Query: 220 KGMQLSVTLYNTL-LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            G++  +  YN L L +C D G T +A     ++   EN  P++ TFS++IT    R   
Sbjct: 359 NGLKADILTYNALILGLCKD-GKTKKAAGFVREL-DKENLVPNASTFSALITGQCVRNNS 416

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD------- 331
             A  ++  M+ +G  PN      LI  + K +  D  V+ L  +    ++PD       
Sbjct: 417 ERAFLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLSTMSEL 476

Query: 332 -DRFCGC 337
            D  C C
Sbjct: 477 CDGLCRC 483



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 8/215 (3%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P  F +L K       F    ++Y  MK  G  P + + N  L ++ R +R       Y+
Sbjct: 154 PLVFDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYR 213

Query: 181 EMTDNG-LSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           E+     +SPN  T   ++RAY   G  + G D L    +M + G+  +V  +NTL++  
Sbjct: 214 EIRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLE---KMMDMGLSPNVVSFNTLISGY 270

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            + G    A ++ + +      QP+  TF+++I       K+ EA  +FNEM  A  +P+
Sbjct: 271 CNKGLFGLALKV-KSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPS 329

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +    +L+  YG+   ++  VR    +   G+  D
Sbjct: 330 VVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKAD 364



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 2/196 (1%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + +++L  T+    +      IY  M ++G SP   +  + L +  R R  +  L+ YRE
Sbjct: 155 LVFDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYRE 214

Query: 217 MKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           ++ +  +  +V   N ++     +G   + F++ E M       P+  +F+++I+    +
Sbjct: 215 IRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDM-GLSPNVVSFNTLISGYCNK 273

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G    A  + + M+E G +PN+    +LI  + K ++  +  R  N +    + P     
Sbjct: 274 GLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTY 333

Query: 336 GCLLNVMTQTPKEELG 351
             LLN   Q    E+G
Sbjct: 334 NTLLNGYGQVGDSEMG 349


>gi|326514834|dbj|BAJ99778.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 609

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 144/305 (47%), Gaps = 16/305 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG  + A G+ +  + +   ++PN   ++T I         D   ++YEEM  +GV P+
Sbjct: 248 RAGEADAARGMLETMKGDG--VEPNVVTYTTFIAECCRTNAVDDAFSLYEEMVRMGVLPD 305

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++T + L+D + RA R  +   +++EM   G +PN  TY +L+ +  +AR G ++  +  
Sbjct: 306 VVTLSALVDGLCRAGRFSEAYALFREMEKIGAAPNHVTYCTLIDSLWKARRGSESHGLLG 365

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           E+  +G+ + + +Y +L+      G  DE  ++F     S+N  P+  T++ +I      
Sbjct: 366 EVVSRGVVMDLVMYTSLMDWLGKQGKIDEVKDMFH-CALSDNHTPNGVTYTVLIDALCRA 424

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G V  AE M  EM +    PN+   +S+I    K          + ++ E GI P+    
Sbjct: 425 GNVDGAEQMLLEMEDKSVHPNVVTFSSIINGLTKQGLLGKAADYMRKMKERGIDPNVVTY 484

Query: 336 GCLLNVMTQTPKEELG------KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
           G +++   +  ++E         L E VE +     ++V LL+      G   +EA  LF
Sbjct: 485 GTVMDGFFKCQEQESALDLYHEMLCEGVEVNK----FIVDLLVNGLRKNGKM-EEAEALF 539

Query: 390 NSISK 394
             ++K
Sbjct: 540 RDMNK 544



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 98  RAGNVEMAFGLYD---RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           R G VE A  L +   R R E  R+D   ++ L+  Y  +G+ +  L   + M+  GV  
Sbjct: 176 RDGQVEGAAALAEMMVRGR-EIHRLDVVGWNALLDGYCKSGDMEAALTAAQRMRTQGVGV 234

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++ YN L+  + RA      + + + M  +G+ PN  TY + +    R    +D  S+Y
Sbjct: 235 DVVGYNTLVAGLCRAGEADAARGMLETMKGDGVEPNVVTYTTFIAECCRTNAVDDAFSLY 294

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM   G+   V   + L+      G   EA+ +F +M+      P+  T+ ++I     
Sbjct: 295 EEMVRMGVLPDVVTLSALVDGLCRAGRFSEAYALFREMEKI-GAAPNHVTYCTLIDSLWK 353

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             + SE+  +  E++  G   +L + TSL+   GK  + D+V
Sbjct: 354 ARRGSESHGLLGEVVSRGVVMDLVMYTSLMDWLGKQGKIDEV 395



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 1/188 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGNV+ A  +     ++    +   FS++I      G      +   +MK  G+ PN++
Sbjct: 423 RAGNVDGAEQMLLEMEDKSVHPNVVTFSSIINGLTKQGLLGKAADYMRKMKERGIDPNVV 482

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D   + +       +Y EM   G+  N      L+    +    E+  +++R+M
Sbjct: 483 TYGTVMDGFFKCQEQESALDLYHEMLCEGVEVNKFIVDLLVNGLRKNGKMEEAEALFRDM 542

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++GM L    Y TL+     +G    AF++ +++ +  N  PD+  ++  +      GK
Sbjct: 543 NKRGMLLDHVNYTTLIDGLFKMGNMPAAFKVGQEL-TERNLSPDAVVYNVFVNCLCMLGK 601

Query: 278 VSEAEAMF 285
             EAE++ 
Sbjct: 602 SKEAESIL 609



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 5/236 (2%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL     +    +D   +++L+   G  G  D   +++    +    PN +TY  L+D +
Sbjct: 362 GLLGEVVSRGVVMDLVMYTSLMDWLGKQGKIDEVKDMFHCALSDNHTPNGVTYTVLIDAL 421

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            RA      + +  EM D  + PN  T++S++    +           R+MKE+G+  +V
Sbjct: 422 CRAGNVDGAEQMLLEMEDKSVHPNVVTFSSIINGLTKQGLLGKAADYMRKMKERGIDPNV 481

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y T++         + A +++ +M   E  + + +    ++      GK+ EAEA+F 
Sbjct: 482 VTYGTVMDGFFKCQEQESALDLYHEMLC-EGVEVNKFIVDLLVNGLRKNGKMEEAEALFR 540

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCL 338
           +M + G   +    T+LI    K        +    L E  ++PD    + F  CL
Sbjct: 541 DMNKRGMLLDHVNYTTLIDGLFKMGNMPAAFKVGQELTERNLSPDAVVYNVFVNCL 596


>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 680

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 115/227 (50%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++T++++YG A  F   ++++  M+   ++ N++TYN ++   G+     
Sbjct: 360 KMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHE 419

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+A   +   +++++++  G+++   LY T++
Sbjct: 420 KATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI 479

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                VG    A  +  ++K      PD+    + ITI +  G   EA  +F +  E+G 
Sbjct: 480 VAYERVGLMGHAKRLLHELK-----LPDNIPRETAITILAKAGSTEEATWVFRQAFESGE 534

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  Y + QR  +V+    ++   G  PD      +LN
Sbjct: 535 VKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLN 581



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 111/214 (51%), Gaps = 1/214 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA    +A GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++
Sbjct: 169 RAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLV 228

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+NL++   R     +  +I+  +  +G++P+   Y S++  YG+A+  ++   + +EM
Sbjct: 229 LYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEM 288

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+  +   Y+TLL++  +     EA  +F +MK   NC  D  T + MI +      
Sbjct: 289 NEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV-NCPLDLTTCNIMIDVYGQLDM 347

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           V EA+ +F  + +   EPN+    ++++ YG+A+
Sbjct: 348 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAE 381



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 4/202 (1%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           V+EE K     P++  YN +L  + RAK+      ++ EM    L+P+  TY++L+ ++G
Sbjct: 147 VHEEAK---YTPSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFG 203

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +    +  LS  ++M++  +   + LY+ L+ +   +    +A  IF  +K S    PD 
Sbjct: 204 KEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRS-GITPDL 262

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             ++SMI +        EA  +  EM EAG  PN    ++L+  Y +  +  + +     
Sbjct: 263 VAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAE 322

Query: 323 LPELGITPDDRFCGCLLNVMTQ 344
           + E+    D   C  +++V  Q
Sbjct: 323 MKEVNCPLDLTTCNIMIDVYGQ 344



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 118/305 (38%), Gaps = 85/305 (27%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +GKT    K+   V     R  +    +Y T      +AG ++ A  L+ + R+    ID
Sbjct: 412 YGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEID 471

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMK---------AI--------------------- 150
              + T+I  Y   G       +  E+K         AI                     
Sbjct: 472 QVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFE 531

Query: 151 -GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
            G   ++  +  +++   R +R   V  ++++M   G  P+ N  A +L AYG+ R  E 
Sbjct: 532 SGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEK 591

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
             +VYREM+E+G              C           +F          PD   F  M+
Sbjct: 592 ADTVYREMQEEG--------------C-----------VF----------PDEVHF-QML 615

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNL------FVLTSLIQCYGKAQRTDDVVRALNRL 323
           ++ S +      E++F E LE+  +PN+       V+ +L   Y +A + +D  R +NR+
Sbjct: 616 SLYSSKKDFEMVESLF-ERLES--DPNVNSKELHLVVAAL---YERADKLNDASRVMNRM 669

Query: 324 PELGI 328
            E GI
Sbjct: 670 RERGI 674


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 128/263 (48%), Gaps = 9/263 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A G+     +     D   ++ LI  Y   GN     N+++EM + G++P ++TY
Sbjct: 390 GKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTY 449

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +L+  + +  R      +++++   G SP+   + +L+  +      +   ++ +EM +
Sbjct: 450 TSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDK 509

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           + +      YNTL+      G  +EA E+ ++MK     +PD  +++++I+  S RG ++
Sbjct: 510 RNIVPDEVTYNTLMQGRCREGKVEEARELLKEMK-RRGIRPDHISYNTLISGYSKRGDIN 568

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           +A  + +EML  GF P L    +LIQ   K Q+ D     L  +   GITPDD     L+
Sbjct: 569 DAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLI 628

Query: 340 NVMTQTPKEELGKLVECVEKSNS 362
                   E +GK+ +  E S+S
Sbjct: 629 --------EGIGKVDDSSEASDS 643



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A G+ ++ +          ++TLI  Y   G+        +EM    + P + 
Sbjct: 318 KGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVS 377

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  +    +  +   + K+M D+G+ P+  TY  L+  Y R    +   +++ EM
Sbjct: 378 TYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEM 437

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG+Q ++  Y +L+ + +       A ++FE +   E   PD   F+++I      G 
Sbjct: 438 ISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKI-IREGASPDLIMFNALIDGHCANGN 496

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  A A+  EM +    P+     +L+Q   +  + ++    L  +   GI PD
Sbjct: 497 LDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPD 550



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 104/265 (39%), Gaps = 38/265 (14%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E  + LY      K +     F+ +I +    G      +    M+ +GVKPN++TYN +
Sbjct: 218 ETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTV 277

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +       R    + +   M + G+ P+  TY SL+    +    E+   +  +MKE G+
Sbjct: 278 IHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGL 337

Query: 223 QLSVTLYNTLL----------------------AMCADV-------------GYTDEAFE 247
             +   YNTL+                      A+   V             G  DEA  
Sbjct: 338 LPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADG 397

Query: 248 IFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
           + +DM  S    PDS T++ +I   C C G   +A  + +EM+  G +P L   TSLI  
Sbjct: 398 MIKDMGDS-GIVPDSITYNILINGYCRC-GNAKKAFNLHDEMISKGIQPTLVTYTSLIYV 455

Query: 307 YGKAQRTDDVVRALNRLPELGITPD 331
             K  R         ++   G +PD
Sbjct: 456 LSKRNRMKAADDLFEKIIREGASPD 480



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 1/173 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++   ++ A  L+++   E    D   F+ LI  +   GN D    + +EM    + P+ 
Sbjct: 457 SKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDE 516

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+    R  +  + + + KEM   G+ P+  +Y +L+  Y +     D  ++  E
Sbjct: 517 VTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDE 576

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           M   G   ++  YN L+         D A E+ ++M  S+   PD  T+ S+I
Sbjct: 577 MLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEM-VSKGITPDDSTYFSLI 628



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           H   G+  +++  +     R     E +Y+T      R G VE A  L    +    R D
Sbjct: 491 HCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPD 550

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
             +++TLI  Y   G+ +    + +EM +IG  P ++TYN L+  + + ++    + + K
Sbjct: 551 HISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLK 610

Query: 181 EMTDNGLSPNWNTYASLLRAYGRA 204
           EM   G++P+ +TY SL+   G+ 
Sbjct: 611 EMVSKGITPDDSTYFSLIEGIGKV 634



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 8/228 (3%)

Query: 84  SPRAS-KLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN 142
           SP+++  L +++ ++R   V+  F      R+         F  LI+        D    
Sbjct: 128 SPKSTLHLLKQTIESRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFE 187

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLR 199
            ++ MK  GV P + T+N +L    +  +   V  +Y EM    +      +N   ++L 
Sbjct: 188 CFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLC 247

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
             G+ +  +D +     M+  G++ +V  YNT++      G  + A  + + MK +   +
Sbjct: 248 KEGKLKKAKDFIG---SMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMK-NRGVE 303

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           PDS+T+ S+I+     GK+ EA  +  +M E G  P      +LI  Y
Sbjct: 304 PDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGY 351



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 1/236 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF  +D  + +        F+ ++ L+      +    +Y EM  + +K  + T+N +++
Sbjct: 185 AFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMIN 244

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +  +  + K     M + G+ PN  TY +++  Y      E    V   MK +G++ 
Sbjct: 245 VLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEP 304

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               Y +L++     G  +EA  I E MK      P + T++++I     +G + +A   
Sbjct: 305 DSYTYGSLISGMCKGGKLEEASGILEKMKEI-GLLPTAVTYNTLIDGYCNKGDLVKAFGY 363

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            +EM+     P +     LI       + D+    +  + + GI PD      L+N
Sbjct: 364 RDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILIN 419



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 171 RPWQVKTIYKEMT---DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R   VK ++ E+    D   + +   +  L+RA    + G+D    +  MKEKG+   + 
Sbjct: 143 RVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIE 202

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            +N +L++   +  T+  + ++ +M   +  +   +TF+ MI +    GK+ +A+     
Sbjct: 203 TFNAMLSLFLKLNQTETVWVLYAEMFRLK-IKSTVYTFNIMINVLCKEGKLKKAKDFIGS 261

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           M   G +PN+    ++I  Y    R +     L+ +   G+ PD    G L++ M +  K
Sbjct: 262 MENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGK 321

Query: 348 EE 349
            E
Sbjct: 322 LE 323


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG +  A  L          ID + ++T++            + + E++ A G  P +
Sbjct: 10  VKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTI 69

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN LL+ + +  R  +   + +++ DNG +P+  TY SL+   G+ +   +   +++E
Sbjct: 70  ATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKE 129

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G+ L    Y  L+      G   +A  +++ M +S+ C PD  T S+MI      G
Sbjct: 130 MASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTM-TSQGCVPDVVTLSTMIDGLCKAG 188

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++  A  +F  M   G  PN  V ++LI    KA++ D  +  L ++ +   TPD
Sbjct: 189 RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 243



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 133/295 (45%), Gaps = 9/295 (3%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L+    +    +D   ++ LI+    AG      +VY+ M + G  P+++T + ++D
Sbjct: 123 AYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID 182

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A R      I+K M   GL+PN   Y++L+    +AR  +  L +  +MK+     
Sbjct: 183 GLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 242

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               YN L+      G    A   F++M  +  C+PD +T++ +I+     G    A  +
Sbjct: 243 DTITYNILIDGLCKSGDVAAARAFFDEMLEA-GCKPDVYTYNILISGFCKAGNTDAACGV 301

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           F++M  +   PN+    +LI    K ++          + E G  PD      L++ + +
Sbjct: 302 FDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCK 361

Query: 345 TPKEELG-KLVECVEKS---NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           + K E G  L + +E+S   NS+     +  L     + +   EA  LFN+I K+
Sbjct: 362 SGKLEGGCMLFDEMERSGVANSQ----TRTRLIFHLCKANRVDEAVSLFNAIRKE 412



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 7/243 (2%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK   S ++Y      + R   L    Y        +AG +  A  +Y    ++    D 
Sbjct: 115 GKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDV 174

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
              ST+I     AG     + +++ M+A G+ PN + Y+ L+  + +A++      +  +
Sbjct: 175 VTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ 234

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M     +P+  TY  L+    ++       + + EM E G +  V  YN L++     G 
Sbjct: 235 MKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGN 294

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
           TD A  +F+DM SS  C P+  T+ ++I+    R ++++A   +  M E G  P+ FV +
Sbjct: 295 TDAACGVFDDMSSSR-CSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYS 353

Query: 302 SLI 304
           SL+
Sbjct: 354 SLV 356



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 91/191 (47%), Gaps = 3/191 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+V  A   +D       + D   ++ LI  +  AGN D    V+++M +    PN++
Sbjct: 256 KSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVV 315

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  + + ++  +    Y+ M + G  P+   Y+SL+    ++   E    ++ EM
Sbjct: 316 TYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM 375

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G+  S T    +  +C      DEA  +F  ++      P  + ++S+I+     GK
Sbjct: 376 ERSGVANSQTRTRLIFHLC-KANRVDEAVSLFNAIRKEG--MPHPYAYNSIISALIKSGK 432

Query: 278 VSEAEAMFNEM 288
           V+E +A++ EM
Sbjct: 433 VNEGQAVYQEM 443



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 107/226 (47%), Gaps = 1/226 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           FS LI     AG      ++ +E    G   ++ TY  ++D + + K+  +   + +++T
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            NG +P   TY +LL    +    E+ + + R++ + G    V  Y +L+        + 
Sbjct: 62  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSF 121

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA+++F++M +S     D+  ++++I      GK+ +A +++  M   G  P++  L+++
Sbjct: 122 EAYKLFKEM-ASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           I    KA R    VR    +   G+ P++     L++ + +  K +
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 226



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 124/285 (43%), Gaps = 15/285 (5%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T++ L++ + +A    Q  ++ +E T NG + + +TY +++    + +  ++ +++  ++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   ++  YN LL     +G  +EA ++   +     C PD  T++S+I     + +
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI-VDNGCTPDVVTYTSLIDGLGKKKR 119

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             EA  +F EM   G   +    T+LI+   +A +          +   G  PD      
Sbjct: 120 SFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 179

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           +++ + +  +  +G  V  + KS    G     ++    I G  K    +    +   +K
Sbjct: 180 MIDGLCKAGR--IGAAVR-IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 236

Query: 398 KAYC-------NCLID-LCVNLNLLENAC---KLLELGLTLEVYT 431
           KA+C       N LID LC + ++        ++LE G   +VYT
Sbjct: 237 KAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYT 281


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 3/214 (1%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           P+ F+   LI  +   GN    L ++E M   GV+  ++TY  L+  + +  +  +   +
Sbjct: 654 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 713

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E    G+ P+   Y +L+ ++  +   +    +  EM++K +      YNTL+     
Sbjct: 714 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 773

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +G  DEA ++ ++M +    QPD  T++++I+  S +G V +A  + NEM+  GF P L 
Sbjct: 774 LGRVDEARKLIDEM-TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLL 832

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              +LIQ   K  + DD    +  + E GITPDD
Sbjct: 833 TYNALIQGLCKNGQGDDAENMVKEMVENGITPDD 866



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 1/173 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G V+    L+D A     R D   ++ LI  + T+GN D    +  EM+   + P+ 
Sbjct: 702 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 761

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+  +    R  + + +  EMT+ G+ P+  TY +L+  Y      +D L +  E
Sbjct: 762 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 821

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           M  KG   ++  YN L+      G  D+A  + ++M  +    PD  T+ S+I
Sbjct: 822 MMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN-GITPDDSTYISLI 873



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKT 177
           PNA  ++T+I  + + G     L++  EM+  G + PN  TY  ++    +  R  +   
Sbjct: 512 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 571

Query: 178 IYKEMTDNG-LSPNWNTYASLLRAYGRARYGE-DTLSVYRE-MKEKGMQLSVTLYNTLLA 234
           ++ EM   G + P    Y +L+  Y     G+ DT  +YR+ M E+G+ ++V  YN L+ 
Sbjct: 572 VFDEMLTKGEVKPEAVMYNALIGGY--CDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 629

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                G   EA+E+ E+M   +   PD +T++ +I      G V +A  +F  M   G  
Sbjct: 630 ALFMDGRGTEAYELVEEM-GGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR 688

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +   T+LI    K  +  +  +  +     GI PD      L+N
Sbjct: 689 ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 734



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 16/259 (6%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L +Y  MK++ +  +  + + LL  +  A        ++ +M    L     T+  +LR 
Sbjct: 437 LRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRH 492

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
              A      L + R+M       +   YNT++A     G    A +I  +M+      P
Sbjct: 493 LCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 548

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           + +T+ ++I+     G+V EA  +F+EML  G  +P   +  +LI  Y    + D  +  
Sbjct: 549 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 608

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG---YVVKLLLEEQ 375
            +R+ E G+         L++ +    +  E  +LVE  E     L    +   +L+   
Sbjct: 609 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE--EMGGKGLAPDVFTYNILINGH 666

Query: 376 DIEGDFKKEATELFNSISK 394
             EG+ KK A E+F ++S+
Sbjct: 667 CKEGNVKK-ALEIFENMSR 684


>gi|255579214|ref|XP_002530453.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529998|gb|EEF31923.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 391

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 112/221 (50%), Gaps = 4/221 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +++ +   G +  C   +EEM   GV  ++ +Y+  +D + +  +PW+   +YKEM 
Sbjct: 140 YNMILRGWFKMGWWSKCREFWEEMDQKGVHKDLHSYSIYMDIVCKGGKPWKAVKLYKEMK 199

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+  +  +Y  ++RA G +   +  + VYREMKE G   +V  YNT++ +  + G   
Sbjct: 200 RKGMKLDVVSYNIVVRAVGLSEGVDFAMRVYREMKELGCMPNVVTYNTIIKLLCETGRVK 259

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA+++ +DM+  +    D  T+        C  K  E   +F+ M+E+G +P +     L
Sbjct: 260 EAYKMLDDMR-KKGIVADVITYHCFF---RCLEKPKEILWLFDRMIESGVQPRMDTYVML 315

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           ++ +G+      V+    ++ E G +PD+     L++ + Q
Sbjct: 316 MRKFGRWGFLRPVLLVWKKMEEQGCSPDEFAYNALIDALVQ 356



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 88/196 (44%), Gaps = 4/196 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A  LY   + +  ++D  +++ +++  G +   D  + VY EMK +G  PN++
Sbjct: 184 KGGKPWKAVKLYKEMKRKGMKLDVVSYNIVVRAVGLSEGVDFAMRVYREMKELGCMPNVV 243

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++  +    R  +   +  +M   G+  +  TY    R   + +   + L ++  M
Sbjct: 244 TYNTIIKLLCETGRVKEAYKMLDDMRKKGIVADVITYHCFFRCLEKPK---EILWLFDRM 300

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+Q  +  Y  L+      G+      +++ M+  + C PD + ++++I     +G 
Sbjct: 301 IESGVQPRMDTYVMLMRKFGRWGFLRPVLLVWKKME-EQGCSPDEFAYNALIDALVQKGM 359

Query: 278 VSEAEAMFNEMLEAGF 293
           +  A     EML  G 
Sbjct: 360 LHMARRYEEEMLAKGL 375


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 111/230 (48%), Gaps = 1/230 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   E A  +Y R + E+ R +   ++ +I +YG +      + V++EM++IG K N+ 
Sbjct: 61  KARCAEKAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANIC 120

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R     + + +++EM   G  P+   Y +L+ AY RA + +    ++  M
Sbjct: 121 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLM 180

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN L+      G   EA  +FE +K  +   P   +   ++   +  G 
Sbjct: 181 QHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLK-RQGMAPTMKSHMLLLAAHARSGN 239

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           V+  E +  ++ ++G  P+   L +++  YG+A R DD+ R L  +   G
Sbjct: 240 VARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRG 289



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 106/224 (47%), Gaps = 2/224 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           + VY+ MK    + N  TY  +++  G++K+P     ++KEM   G   N  TY +L+ A
Sbjct: 69  VEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNA 128

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           + R    E    V+ EM++ G +  V  YN L+   +  G+   A EIF  M+    C+P
Sbjct: 129 FAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHM-GCEP 187

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  +++ ++      G   EAEA+F  +   G  P +     L+  + ++         +
Sbjct: 188 DRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVM 247

Query: 321 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
            +L + G+ PD      +LN   +  + +++ +L+  +E+  ++
Sbjct: 248 AQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRGTR 291



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 1/209 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L++ Y TAG+      V  EM+  G+ P+   YN  LD + +A+   +   +Y+ 
Sbjct: 15  DTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEVYQR 74

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M       N  TY  ++  YG+++     + V++EM+  G + ++  Y  L+   A  G 
Sbjct: 75  MKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGL 134

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A E+FE+M+ + + +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 135 CEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYN 193

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
            L+  YG+A    +       L   G+ P
Sbjct: 194 ILVDAYGRAGLHREAEAVFESLKRQGMAP 222



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 36/189 (19%)

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +Y  + +    P  +TYA LLRAY  A        V  EM+E G+  S T+YN  L    
Sbjct: 1   MYAALLEARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLL 60

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-------------------CSCRGKV 278
                ++A E+++ MK  E C+ ++ T++ MI +                     C+  +
Sbjct: 61  KARCAEKAVEVYQRMK-RERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANI 119

Query: 279 ----------------SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
                            +AE +F EM +AG EP+++   +L++ Y +A          + 
Sbjct: 120 CTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSL 179

Query: 323 LPELGITPD 331
           +  +G  PD
Sbjct: 180 MQHMGCEPD 188



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 103/229 (44%), Gaps = 5/229 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG  + A  ++   ++     D  +++ L+  YG AG       V+E +K  G+ P M
Sbjct: 165 SRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTM 224

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    R+    + + +  ++  +GL+P+     ++L AYGRA   +D   +   
Sbjct: 225 KSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAA 284

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+ +G +  V  YN  +      GY +     F  ++       D  T++S +   + + 
Sbjct: 285 MERRGTR-DVGTYNVAVNAYGRAGYLERMEAAFASLE-RRGLAADVVTWTSRMGAYARKK 342

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV---VRALNR 322
           +      +F EM++AG  P+      L+      ++ + V   VR++++
Sbjct: 343 EYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDERQVEQVTAIVRSMHK 391


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 7/246 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++    + +     ++  D   F+TLI  Y   GNF   L ++ EM   G+ PN++
Sbjct: 285 REGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVV 344

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+++M +A    +      +M D GL PN  TY +L+  + +  + +    + +EM
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G   ++  YN L+     +G  ++A  + ++M       PD  ++S++I+   CR +
Sbjct: 405 VENGFTPTIITYNALINGHCILGRMEDASGLLQEM-IERGFIPDVVSYSTIIS-GFCRNQ 462

Query: 278 VSEAEAMFN---EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             E E  F    EM+  G  P++   +SLIQ   K +R  +V      +  LG+ PD+  
Sbjct: 463 --ELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT 520

Query: 335 CGCLLN 340
              L+N
Sbjct: 521 YTSLIN 526



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AGN+EM    +          +   ++T+I  Y           +   M   G+ PN+I+
Sbjct: 216 AGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLIS 275

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +++ + R  +  +   I +EM+     P+  T+ +L+  Y         L ++ EM 
Sbjct: 276 YNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMV 335

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G+  +V  Y TL+      G  + A E  + M+      P+  T++++I   S +G +
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR-DRGLHPNGRTYTTLIDGFSQQGFL 394

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +A  +  EM+E GF P +    +LI  +    R +D    L  + E G  PD
Sbjct: 395 KQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPD 447



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 37/258 (14%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV-KTIYKE 181
            F  ++K        +  L++    K+ G  P +++YN +LD + R K+  ++ + I+KE
Sbjct: 134 VFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M ++G+SPN  TY  L+R +  A   E  L  + EM+  G   +V  YNT++     +  
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 242 TDEAF-----------------------------------EIFEDMKSSENCQPDSWTFS 266
             EAF                                   EI E+M S     PD  TF+
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM-SKRRYVPDRVTFN 312

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           ++I      G   +A  +  EM++ G  PN+   T+LI    KA   +  +  L+++ + 
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372

Query: 327 GITPDDRFCGCLLNVMTQ 344
           G+ P+ R    L++  +Q
Sbjct: 373 GLHPNGRTYTTLIDGFSQ 390



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 120/277 (43%), Gaps = 17/277 (6%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A GL        +  D  ++ST+I  +      +    +  EM A G+ P++ TY
Sbjct: 427 GRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATY 486

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           ++L+  + + +R  +V  +++EM   GL P+  TY SL+ AY      +  L ++ EM +
Sbjct: 487 SSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQ 546

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS------ 273
           KG    +  YN L+        T EA  +   +   E+  P+  T++++I  C+      
Sbjct: 547 KGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV-PNEITYNTLIDNCNNLEFKS 605

Query: 274 ---------CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
                     +G ++EA+ +   ML+ G++ N  V   +I  + K    +        + 
Sbjct: 606 ALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEML 665

Query: 325 ELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECVEKS 360
             G  P       L   +    KE EL +L++   KS
Sbjct: 666 HSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKS 702



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 99/264 (37%), Gaps = 77/264 (29%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+  A    D+ R+     +   ++TLI  +   G       + +EM   G  P +I
Sbjct: 355 KAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTII 414

Query: 158 TYNNLLD---TMGRAK-----------------------------------RPWQVKTIY 179
           TYN L++    +GR +                                   + +Q+K   
Sbjct: 415 TYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKV-- 472

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM   G+SP+  TY+SL++   + R   +   +++EM   G+                 
Sbjct: 473 -EMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGL----------------- 514

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
                               PD  T++S+I      G + +A  + +EM++ GF P++  
Sbjct: 515 -------------------PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVT 555

Query: 300 LTSLIQCYGKAQRTDDVVRALNRL 323
              LI  + K  RT +  R L +L
Sbjct: 556 YNVLINGFNKQSRTKEAKRLLLKL 579


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           E M+++GV P ++TYN L+D   + ++  +   I +EMT  G  PN  TY + L  +G  
Sbjct: 69  ETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFL--HGLC 126

Query: 205 RYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +YG  +D L+++R M EK ++L V  Y TL+      G   EA+ + ++M++S  C P  
Sbjct: 127 KYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS-GCVPKP 185

Query: 263 WTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             ++++++   C+G +++EA  +F  M  +G  P+      ++  Y +  R DD +  L 
Sbjct: 186 GCYNAILSWL-CKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQ 244

Query: 322 RLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQD--- 376
           ++   G+ P +     L++ + +  +  E    L E + +  S       L+ ++Q    
Sbjct: 245 QMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALMRKQQTDDS 304

Query: 377 ---IEGDFKKE 384
              +E D++KE
Sbjct: 305 NLVVELDYRKE 315



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ A  L+     +K R+D   ++TLI     AG      ++ +EM+  G  P    Y
Sbjct: 129 GKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCY 188

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +L  + +  R  +   ++K MT +G+ P+W T+  ++  Y R    +D L + ++MK 
Sbjct: 189 NAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKS 248

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            G+     +YNTL+      G   EA+ + ++M  S    P+S T++ M
Sbjct: 249 AGLAPREVIYNTLIDALNRAGRVSEAYRLLQEM-ISRGLSPNSRTYALM 296



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 1/184 (0%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           M   G  P ++T+  L+D + +A R      + + M + G  PN   +  ++ A  +   
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
             +       M+  G+  ++  YN L+           A EI ++M +    +P+  T++
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEM-TGRGHEPNHVTYN 119

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           + +      GKV +A A+F  M E     +++  T+LI    +A +  +    L+ +   
Sbjct: 120 TFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS 179

Query: 327 GITP 330
           G  P
Sbjct: 180 GCVP 183



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           S+  +   +  A  L+ R        D   F  ++  Y      D  L + ++MK+ G+ 
Sbjct: 193 SWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLA 252

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           P  + YN L+D + RA R  +   + +EM   GLSPN  TYA
Sbjct: 253 PREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYA 294



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 9/198 (4%)

Query: 34  SFYSKTSLQKRSVSLQE-TQSSNPTKHSQNPQYPHG--KTGSSPKSYIWVNPKSPRASKL 90
            F  +  L +    LQE T   +   H     + HG  K G    +       + +  +L
Sbjct: 89  GFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRL 148

Query: 91  KEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 144
               Y T      +AG +  A+ L D   N      P  ++ ++         +    ++
Sbjct: 149 DVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLF 208

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           + M   G+ P+ +T+  ++    R  R      + ++M   GL+P    Y +L+ A  RA
Sbjct: 209 KRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRA 268

Query: 205 RYGEDTLSVYREMKEKGM 222
               +   + +EM  +G+
Sbjct: 269 GRVSEAYRLLQEMISRGL 286



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 3/151 (1%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVG 240
           M + G  P   T+  L+    +A    D   +   M E+G   +  ++N ++ A+C + G
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKE-G 59

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            + EA+   E M+S     P   T++ +I       K+  A  +  EM   G EPN    
Sbjct: 60  RSAEAYGYIETMRSM-GVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTY 118

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + +    K  + DD +     + E  I  D
Sbjct: 119 NTFLHGLCKYGKVDDALALFRAMTEKKIRLD 149


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 3/214 (1%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           P+ F+   LI  +   GN    L ++E M   GV+  ++TY  L+  + +  +  +   +
Sbjct: 659 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 718

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E    G+ P+   Y +L+ ++  +   +    +  EM++K +      YNTL+     
Sbjct: 719 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 778

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +G  DEA ++ ++M +    QPD  T++++I+  S +G V +A  + NEM+  GF P L 
Sbjct: 779 LGRVDEARKLIDEM-TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLL 837

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              +LIQ   K  + DD    +  + E GITPDD
Sbjct: 838 TYNALIQGLCKNGQGDDAENMVKEMVENGITPDD 871



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 1/173 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G V+    L+D A     R D   ++ LI  + T+GN D    +  EM+   + P+ 
Sbjct: 707 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 766

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+  +    R  + + +  EMT+ G+ P+  TY +L+  Y      +D L +  E
Sbjct: 767 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 826

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           M  KG   ++  YN L+      G  D+A  + ++M  +    PD  T+ S+I
Sbjct: 827 MMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN-GITPDDSTYISLI 878



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKT 177
           PNA  ++T+I  + + G     L++  EM+  G + PN  TY  ++    +  R  +   
Sbjct: 517 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 576

Query: 178 IYKEMTDNG-LSPNWNTYASLLRAYGRARYGE-DTLSVYRE-MKEKGMQLSVTLYNTLLA 234
           ++ EM   G + P    Y +L+  Y     G+ DT  +YR+ M E+G+ ++V  YN L+ 
Sbjct: 577 VFDEMLTKGEVKPEAVMYNALIGGY--CDQGKLDTALLYRDRMVERGVAMTVATYNLLVH 634

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                G   EA+E+ E+M   +   PD +T++ +I      G V +A  +F  M   G  
Sbjct: 635 ALFMDGRGTEAYELVEEM-GGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR 693

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +   T+LI    K  +  +  +  +     GI PD      L+N
Sbjct: 694 ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 739



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 16/259 (6%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L +Y  MK++ +  +  + + LL  +  A        ++ +M    L     T+  +LR 
Sbjct: 442 LRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRH 497

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
              A      L + R+M       +   YNT++A     G    A +I  +M+      P
Sbjct: 498 LCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 553

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           + +T+ ++I+     G+V EA  +F+EML  G  +P   +  +LI  Y    + D  +  
Sbjct: 554 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 613

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG---YVVKLLLEEQ 375
            +R+ E G+         L++ +    +  E  +LVE  E     L    +   +L+   
Sbjct: 614 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE--EMGGKGLAPDVFTYNILINGH 671

Query: 376 DIEGDFKKEATELFNSISK 394
             EG+ KK A E+F ++S+
Sbjct: 672 CKEGNVKK-ALEIFENMSR 689


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 7/246 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++    + +     ++  D   F+TLI  Y   GNF   L ++ EM   G+ PN++
Sbjct: 285 REGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVV 344

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+++M +A    +      +M D GL PN  TY +L+  + +  + +    + +EM
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G   ++  YN L+     +G  ++A  + ++M       PD  ++S++I+   CR +
Sbjct: 405 VENGFTPTIITYNALINGHCILGRMEDASGLLQEM-IERGFIPDVVSYSTIIS-GFCRNQ 462

Query: 278 VSEAEAMFN---EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             E E  F    EM+  G  P++   +SLIQ   K +R  +V      +  LG+ PD+  
Sbjct: 463 --ELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT 520

Query: 335 CGCLLN 340
              L+N
Sbjct: 521 YTSLIN 526



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 107/235 (45%), Gaps = 5/235 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           AGN+EM  GL+     E+    PN   ++T+I  Y           +   M   G+ PN+
Sbjct: 216 AGNLEM--GLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNL 273

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I+YN +++ + R  +  +   I +EM+     P+  T+ +L+  Y         L ++ E
Sbjct: 274 ISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAE 333

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G+  +V  Y TL+      G  + A E  + M+      P+  T++++I   S +G
Sbjct: 334 MVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMR-DRGLHPNGRTYTTLIDGFSQQG 392

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + +A  +  EM+E GF P +    +LI  +    R +D    L  + E G  PD
Sbjct: 393 FLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPD 447



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 37/258 (14%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV-KTIYKE 181
            F  ++K        +  L++    K+ G  P +++YN +LD + R K+  ++ + I+KE
Sbjct: 134 VFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M ++G+SPN  TY  L+R +  A   E  L  + EM+  G   +V  YNT++     +  
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 242 TDEAF-----------------------------------EIFEDMKSSENCQPDSWTFS 266
             EAF                                   EI E+M S     PD  TF+
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM-SKRRYVPDRVTFN 312

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           ++I      G   +A  +  EM++ G  PN+   T+LI    KA   +  +  L+++ + 
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372

Query: 327 GITPDDRFCGCLLNVMTQ 344
           G+ P+ R    L++  +Q
Sbjct: 373 GLHPNGRTYTTLIDGFSQ 390



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 120/277 (43%), Gaps = 17/277 (6%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A GL        +  D  ++ST+I  +      +    +  EM A G+ P++ TY
Sbjct: 427 GRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATY 486

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           ++L+  + + +R  +V  +++EM   GL P+  TY SL+ AY      +  L ++ EM +
Sbjct: 487 SSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQ 546

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS------ 273
           KG    +  YN L+        T EA  +   +   E+  P+  T++++I  C+      
Sbjct: 547 KGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV-PNEITYNTLIDNCNNLEFKS 605

Query: 274 ---------CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
                     +G ++EA+ +   ML+ G++ N  V   +I  + K    +        + 
Sbjct: 606 ALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEML 665

Query: 325 ELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECVEKS 360
             G  P       L   +    KE EL +L++   KS
Sbjct: 666 HSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKS 702



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 99/264 (37%), Gaps = 77/264 (29%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+  A    D+ R+     +   ++TLI  +   G       + +EM   G  P +I
Sbjct: 355 KAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTII 414

Query: 158 TYNNLLD---TMGRAK-----------------------------------RPWQVKTIY 179
           TYN L++    +GR +                                   + +Q+K   
Sbjct: 415 TYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKV-- 472

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM   G+SP+  TY+SL++   + R   +   +++EM   G+                 
Sbjct: 473 -EMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGL----------------- 514

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
                               PD  T++S+I      G + +A  + +EM++ GF P++  
Sbjct: 515 -------------------PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVT 555

Query: 300 LTSLIQCYGKAQRTDDVVRALNRL 323
              LI  + K  RT +  R L +L
Sbjct: 556 YNVLINGFNKQSRTKEAKRLLLKL 579


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 115/242 (47%), Gaps = 2/242 (0%)

Query: 89  KLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 148
           K+    Y T+   V+M   L+D    +    D   FS LIK Y   G  D  + ++ EM+
Sbjct: 367 KIMLNGYATKGCLVDMT-DLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMR 425

Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
             GVKP+++TY  ++  + R  +       + +M D G++P+   Y  L++ +       
Sbjct: 426 DHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLL 485

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
               +  E+   GM+L +  +++++     +G   +A  IF D+  +    PD+  +S +
Sbjct: 486 KAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIF-DLTVNVGQHPDAVVYSML 544

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +      GK+ +A  +F+ M+ AG EPN+ V  +L+  Y K  R D+ +     + + GI
Sbjct: 545 MDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI 604

Query: 329 TP 330
            P
Sbjct: 605 KP 606



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 124/250 (49%), Gaps = 16/250 (6%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A++T+I  +   G+ +   ++++EM   G+ P+++TY++++  + +A+   + +   
Sbjct: 222 DVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFL 281

Query: 180 KEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++M + G+ P NW TY +L+  Y      ++ + V++EM+   +   V   N L+     
Sbjct: 282 RQMVNKGVLPDNW-TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCK 340

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA ++F+ M + +   PD +++  M+   + +G + +   +F+ ML  G  P+++
Sbjct: 341 YGKIKEARDVFDTM-AMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIY 399

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE----ELGKLV 354
             + LI+ Y      D  +   N + + G+ PD         V+T T        +GK+ 
Sbjct: 400 TFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPD---------VVTYTTVIAALCRIGKMD 450

Query: 355 ECVEKSNSKL 364
           + +EK N  +
Sbjct: 451 DAMEKFNQMI 460



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 4/159 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G +E A  ++D   +    I+PN   + TL+  Y   G  D  L+++ EM   G+KP+ 
Sbjct: 551 VGKMEKALRVFDAMVSAG--IEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 608

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I YN ++D +  A R    K  + EMT++G++ N  TY  +LR + + R  ++ + +++E
Sbjct: 609 ILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKE 668

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           ++   +++ +   NT++A        +EA ++F  +  S
Sbjct: 669 LRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRS 707



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 124/292 (42%), Gaps = 7/292 (2%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +   G   K+ I  N       K    +Y T      R G ++ A   +++  ++    D
Sbjct: 408 YANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 467

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
             A+  LI+ + T G+      +  E+   G++ +++ ++++++ + +  R    + I+ 
Sbjct: 468 KYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFD 527

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
              + G  P+   Y+ L+  Y      E  L V+  M   G++ +V +Y TL+     +G
Sbjct: 528 LTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIG 587

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             DE   +F +M   +  +P +  ++ +I      G+   A+  F+EM E+G   N    
Sbjct: 588 RIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTY 646

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
             +++ + K +  D+ +     L  + +  D      ++  M QT + E  K
Sbjct: 647 NIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAK 698



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 1/198 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  ++D   N     D   +S L+  Y   G  +  L V++ M + G++PN++
Sbjct: 515 KLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV 574

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L++   +  R  +  ++++EM   G+ P+   Y  ++     A         + EM
Sbjct: 575 VYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEM 634

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+ ++   YN +L         DEA  +F+++++  N + D  T ++MI       +
Sbjct: 635 TESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAM-NVKIDIITLNTMIAGMFQTRR 693

Query: 278 VSEAEAMFNEMLEAGFEP 295
           V EA+ +F  +  +G  P
Sbjct: 694 VEEAKDLFASISRSGLVP 711



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
           LSP  +TYA L+    RA   E  L+ + ++   G+++ + + N LL    +   TDEA 
Sbjct: 111 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 170

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF--EPNLFVLTSLI 304
           +I         C PD +++S ++     +GK  +A+ +   M E G    P++   T++I
Sbjct: 171 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVI 230

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
            C+ K    +        + + GI PD
Sbjct: 231 DCFFKEGDVNKACDLFKEMVQRGIPPD 257



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 1/217 (0%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N   R+D   FS++I      G      N+++    +G  P+ + Y+ L+D      +  
Sbjct: 496 NNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKME 555

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++  M   G+ PN   Y +L+  Y +    ++ LS++REM +KG++ S  LYN ++
Sbjct: 556 KALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 615

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G T  A   F +M  S     +  T++ ++          EA  +F E+     
Sbjct: 616 DGLFVAGRTVPAKVKFHEMTES-GIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNV 674

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + ++  L ++I    + +R ++       +   G+ P
Sbjct: 675 KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 711



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 2/183 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P   TY  L+D   RA RP      + ++   GL  +      LL+ +  A+  ++ L
Sbjct: 111 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 170

Query: 212 SVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMI 269
            +      E G    V  Y+ LL    D G + +A ++   M +    C PD   ++++I
Sbjct: 171 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVI 230

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G V++A  +F EM++ G  P+L   +S++    KA+        L ++   G+ 
Sbjct: 231 DCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVL 290

Query: 330 PDD 332
           PD+
Sbjct: 291 PDN 293


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 2/222 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +AF   IK +  AG     + V+E M+  G    + ++N LL  + +     +   ++  
Sbjct: 273 DAFKIAIKSFAAAGEIKNAVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDR 332

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M D   +P+  +Y +L+ A+  AR   +   V+ +M EKGM+  V ++NT++        
Sbjct: 333 MRDQ-YTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQR 391

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             EA ++FE MK+ +   P+ WT++ +I     +GK+  A   F EM  AG +P +   T
Sbjct: 392 RPEAVKMFELMKA-KGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYT 450

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            L+  YG A+R D V   L  + + G  PD R    L+ ++T
Sbjct: 451 CLLVGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLT 492



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 118/256 (46%), Gaps = 5/256 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++DR R++ +  D  +++ L+  +  A N      V+ +M   G+KP+++ +N ++D + 
Sbjct: 329 VFDRMRDQ-YTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLL 387

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R +R  +   +++ M   G  PN  TY  L+R + +    +  +  + EM+  G Q  V 
Sbjct: 388 RGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVA 447

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  LL    +    D    + E+M + + C PD  T++++I + + R    +A  ++ +
Sbjct: 448 TYTCLLVGYGNAKRMDRVTAMLEEM-AQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKK 506

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLN--VMTQ 344
           M+  G EP +     +++ Y    R   +  A+   +   GI PD       +N  +   
Sbjct: 507 MITKGLEPTIHTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHG 566

Query: 345 TPKEELGKLVECVEKS 360
            P E    L E ++K 
Sbjct: 567 RPAEACKFLEEMIQKG 582



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 6/198 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ LI+ +   G  D  +  +EEM+  G +P + TY  LL   G AKR  +V  +
Sbjct: 409 PNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAM 468

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM   G  P+  TY +L++        +D + +Y++M  KG++ ++  YN ++     
Sbjct: 469 LEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMK-SYF 527

Query: 239 VGYTDEAF--EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           +G  + A    ++E+M     C PD  +++  I      G+ +EA     EM++ G +  
Sbjct: 528 LGGRNYAMGCAVWEEMHRKGIC-PDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGMKAP 586

Query: 297 LFVLTSLIQCYGKAQRTD 314
                     + KA + D
Sbjct: 587 QIDYNKFAADFSKAGKPD 604



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 3/157 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++MA   ++  +    + +   ++ L+  YG A   D    + EEM   G  P+  
Sbjct: 423 KQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDGR 482

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYR 215
           TYN L+  +     P     IYK+M   GL P  +TY  ++++Y  G   Y     +V+ 
Sbjct: 483 TYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNYAMGC-AVWE 541

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           EM  KG+   V  Y   +      G   EA +  E+M
Sbjct: 542 EMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEM 578



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TI 178
           D   ++ LIKL       D  + +Y++M   G++P + TYN ++ +     R + +   +
Sbjct: 480 DGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNYAMGCAV 539

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++EM   G+ P+ N+Y   +  + R     +      EM +KGM+     YN   A  + 
Sbjct: 540 WEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGMKAPQIDYNKFAADFSK 599

Query: 239 VGYTDEAFEIFEDMK 253
            G  D  +E+ + +K
Sbjct: 600 AGKPDILYELAQKVK 614



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 38/174 (21%)

Query: 193 TYASLLRAYGRARYGE----------------------------------DTLSVYREMK 218
           TY  +L   G+AR  E                                  + + V+  M+
Sbjct: 240 TYCKMLHILGKARQFETMVALVQEMGKAGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMR 299

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MITICSCRGK 277
             G    V  +N LL   A  G   EA  +F+ M+  +   PD  ++++ M+  C+ R  
Sbjct: 300 VHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMR--DQYTPDLRSYTALMLAWCNARNL 357

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EA  ++N+MLE G +P++ V  ++I    + QR  + V+    +   G  P+
Sbjct: 358 V-EAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAVKMFELMKAKGPPPN 410


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 121/260 (46%), Gaps = 5/260 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R   V+ A GL+     ++WR  PN   +++LI  +  AG +   +N+ ++M+   + P+
Sbjct: 165 RHNKVDQARGLFFEM--QEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPS 222

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             TYNN+++  G A    +   + K+MT+NG+ P+  T+  +L A+         ++ + 
Sbjct: 223 RTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFE 282

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSC 274
            MK   +       N ++     +G   EA E+F  M+     C PD  T++S++   S 
Sbjct: 283 IMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSV 342

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+    +A+F+ M+  G  PN+    +L+  Y       + +     L + G+ PD   
Sbjct: 343 CGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVS 402

Query: 335 CGCLLNVMTQTPKEELGKLV 354
              LLN   ++ + E  + V
Sbjct: 403 YTSLLNAYGRSAQPEKAREV 422



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 147/339 (43%), Gaps = 78/339 (23%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E    ++D    E  R +  +++ L+  Y + G     L  ++ +K  G++P++++Y
Sbjct: 344 GQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSY 403

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +LL+  GR+ +P + + ++ EM  N   PN  +Y +L+ AYG A   ++ +S+  EM++
Sbjct: 404 TSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQ 463

Query: 220 KGMQLSVTLYNTLLAMCA-----------------------------------DVGYTDE 244
            G+Q  V   +TLL  C                                     +G   +
Sbjct: 464 DGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKK 523

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMIT---------------------------------I 271
           A  ++  M++  N +PD+ T++ +I+                                 I
Sbjct: 524 ALVLYTSMRAG-NVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVI 582

Query: 272 CSC--RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPEL 326
           CS   +GK++EA + FN M E G  P++   T+LI+ Y   G  +R  D+ +    +   
Sbjct: 583 CSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFK---EMENN 639

Query: 327 GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 364
           G  PD   C  L+  + +  + E + +L+E +++   +L
Sbjct: 640 GTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQL 678



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 3/205 (1%)

Query: 105 AFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           A  L++  R  +    P+   +++++  Y   G  + C  V++ M A GV+PN+++YN L
Sbjct: 312 AIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNAL 371

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L          +    +K +  NGL P+  +Y SLL AYGR+   E    V+ EM++   
Sbjct: 372 LGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNAC 431

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           + +   YN L+      G   EA  +  +M+  +  QPD  + S+++T C    ++++ +
Sbjct: 432 KPNKVSYNALIDAYGSAGMLKEAISLLHEME-QDGIQPDVISISTLLTACGRCKQLTKID 490

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCY 307
            +       G + N     S I  Y
Sbjct: 491 IILAAAKSRGIQLNTVAYNSGIGSY 515



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 83/185 (44%), Gaps = 1/185 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLIK Y   G++    ++++EM+  G +P+ I  ++L++ + +  +P +V  + 
Sbjct: 609 DVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQPERVLQLI 668

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M    +  N   Y  ++ +    R  +    +   +      +S    N +L      
Sbjct: 669 EFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLDSSLSSISFGTLNHILNFLGKC 728

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G T+   ++F  M +S +    S T++ ++      GK  +   +   M +AG  P L++
Sbjct: 729 GRTESMMKLFYKMVTSCSTVGLS-TYTILLRNLLIVGKWRKYVEVLQWMEDAGVCPTLYM 787

Query: 300 LTSLI 304
             S++
Sbjct: 788 YQSVL 792


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 4/228 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+++I  Y  AG  +  + VY +M A G+ PN +TYN L++  G+         +
Sbjct: 323 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 382

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y++MT     P+  T++SL+  Y R    +D L ++ +M +  +Q +V  ++ ++     
Sbjct: 383 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 442

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNL 297
              +DEA  +  ++    +  P ++ ++ +I  +C C GKV EA  +   M E G  P+ 
Sbjct: 443 QNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCKC-GKVDEANLIRKGMEEKGCRPDK 501

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +  T LI  Y    R  + +   + + E G +PD     C ++ + + 
Sbjct: 502 YTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKA 549



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 96/250 (38%), Gaps = 10/250 (4%)

Query: 98  RAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           R+G    A  L+D+      +  D    S L+     A   D    +  +    G +   
Sbjct: 159 RSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEA 218

Query: 157 ITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             YN L+ ++ GR +    V    + + D   SP+  ++  +++   R    +  L +  
Sbjct: 219 YAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVE 278

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M E G       +N ++             E+   ++    C P+  TF+S+I+     
Sbjct: 279 RMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA 338

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD---- 331
           GK+ +A A++N+M+ +G  PN      LI  YGK       V    ++  L   PD    
Sbjct: 339 GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTF 398

Query: 332 ----DRFCGC 337
               D +C C
Sbjct: 399 SSLIDGYCRC 408


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 10/251 (3%)

Query: 98  RAGNVEMAFGL---YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           RA N+ +A        R  N   +++   F++LI+ YG AG F   + V+  MK++GV P
Sbjct: 130 RARNLNVARNFLFSIKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSP 189

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSV 213
           +++T+N+LL  + +  R    ++++ EM    G++P+  T+  L+R + +    ++    
Sbjct: 190 SVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRF 249

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITIC 272
           ++EM        +  YNTL+      G  + A  +   M K S N  PD  T+++++   
Sbjct: 250 FKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGY 309

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPD 331
             + ++ EA  +F EM+  G +PN     +LI+   + Q+ D + +     L   G  PD
Sbjct: 310 CMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPD 369

Query: 332 DRFCGCLLNVM 342
                C LN +
Sbjct: 370 T----CTLNTL 376



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   MA  ++D   +  + + P+   F+ LI+ +      D     ++EM      P+
Sbjct: 203 KRGRTNMAQSVFDEMLS-TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPD 261

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMT--DNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           ++TYN L+D + RA +      +   M      L+P+  TY +L+R Y      ++ L V
Sbjct: 262 LVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVV 321

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + EM  KG++ +   YNTL+    +V   D+  +IFE         PD+ T ++++    
Sbjct: 322 FEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHC 381

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             G +++A  +F +M+     P+    + LI+
Sbjct: 382 NAGNLNDALEVFEKMMVLNVRPDSATYSVLIR 413



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 3/175 (1%)

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTI---YKEMTDNGLSPNWNTYASLLRAYGRARY 206
           +G   N  +Y  +L+ +GRA+     +      K  ++  +      + SL+R+YG+A  
Sbjct: 112 LGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGTVKLEDRFFNSLIRSYGKAGL 171

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            ++++ V+  MK  G+  SV  +N+LL +    G T+ A  +F++M S+    PD++TF+
Sbjct: 172 FQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFN 231

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
            +I        V E    F EM     +P+L    +L+    +A + +     +N
Sbjct: 232 ILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVN 286



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 5/174 (2%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR---YGEDTLSVYREMK 218
           + + +   K P +    +    + G + N  +Y  +L   GRAR      + L   +   
Sbjct: 89  VFEVLRLIKTPSKALQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRS 148

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              ++L    +N+L+      G   E+ ++F  MKS     P   TF+S++ I   RG+ 
Sbjct: 149 NGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSV-GVSPSVVTFNSLLLILLKRGRT 207

Query: 279 SEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + A+++F+EML   G  P+ +    LI+ + K    D+  R    +      PD
Sbjct: 208 NMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPD 261



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 10/222 (4%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--KAI-----G 151
           AGN+  A  ++++      R D   +S LI+     GNF+    +++E+  K I     G
Sbjct: 383 AGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDG 442

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
             P +  Y ++ + + R  +  + + +++++   G + +  ++  L++ + R    E   
Sbjct: 443 CTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRG-TQDPLSFKILIKGHCREGTFEAGY 501

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            +   M  +     +  Y +L+      G    A++  E M  S +  P++ TF S++  
Sbjct: 502 ELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHV-PETSTFHSILAR 560

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ-CYGKAQR 312
              +G   E+      MLE     N+ + T  ++  +G   R
Sbjct: 561 LLAKGCAHESARFIMLMLEGKIRQNINLSTHTVRLLFGSGLR 602


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 118/236 (50%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG +E A  L      E   + P A++    I  +G +G     +  +E+MKA G+ PN
Sbjct: 414 RAGRIEDALKLL--GTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPN 471

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++  N  L ++    R  + KT++  + +NGL+P+  TY  +++ Y +    ++ +++  
Sbjct: 472 IVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLS 531

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM   G +  V + N+L+      G  DEA+++F+ MK  +   P   T++++++     
Sbjct: 532 EMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMK-LSPTVVTYNTLLSGLGKE 590

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G+V +A  +F  M+E    PN     +L+ C+ K    +  ++  +++  +   PD
Sbjct: 591 GRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPD 646



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 112/229 (48%), Gaps = 1/229 (0%)

Query: 103  EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
            E A+ L+   +N     D   F+ L+ ++G +G       +Y+EM +   KP+ ITYN +
Sbjct: 805  EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 163  LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
            + ++ ++    +    + ++  +   P   TY  L+    +    E+ + ++ EM + G 
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924

Query: 223  QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            + +  ++N L+     +G T+ A ++F+ M  +E  +PD  +++ ++      G+V EA 
Sbjct: 925  KPNCAIFNILINGYGKIGDTETACQLFKRM-VNEGIRPDLKSYTILVDCLCLAGRVDEAL 983

Query: 283  AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              FNE+   G +P+      +I   GK+QR ++ +   N +   GI PD
Sbjct: 984  YYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPD 1032



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 37/305 (12%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           K+   R G  +M   L ++ R   + ++  +++ LI L   +G     L VY  M + G+
Sbjct: 165 KALSIRGGLRQMTTVL-NKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGL 223

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           KP++ TY+ L+  +G+ +    V  + KEM D GL PN  T+   +R  GRA   ++   
Sbjct: 224 KPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYE 283

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS------------------ 254
           ++R M ++G    +  Y  L+    + G  + A E+F  MK+                  
Sbjct: 284 IFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN 343

Query: 255 ----------------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                           ++   PD  TF+ ++ +        EA A F+ M + G  PNL 
Sbjct: 344 DFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLH 403

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
              +LI    +A R +D ++ L  +  +G+ P        ++   ++   E GK VE  E
Sbjct: 404 TYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSG--ETGKAVETFE 461

Query: 359 KSNSK 363
           K  +K
Sbjct: 462 KMKAK 466



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG +E A  L+ + +    + D   + TL+  +   G+ D     + +M+A G  P+++T
Sbjct: 310 AGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVT 369

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +  L+D + +A+   +    +  M   G+ PN +TY +L+    RA   ED L +   M+
Sbjct: 370 FTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTME 429

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G+Q +   YN  +      G T +A E FE MK ++   P+    ++ +   +  G++
Sbjct: 430 SVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMK-AKGIVPNIVACNASLYSLAEMGRL 488

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EA+ MFN + E G  P+      +++CY K  + D+ V  L+ +   G  PD
Sbjct: 489 REAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPD 541



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 107/234 (45%), Gaps = 1/234 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            ++G +   F LY    + + + D   ++ +I     + N D  L+ + ++ +   +P   
Sbjct: 835  KSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPR 894

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            TY  L+D + +  R  +   +++EM+D G  PN   +  L+  YG+    E    +++ M
Sbjct: 895  TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRM 954

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              +G++  +  Y  L+      G  DEA   F ++KS+    PD   ++ +I       +
Sbjct: 955  VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKST-GLDPDFIAYNRIINGLGKSQR 1013

Query: 278  VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + EA A++NEM   G  P+L+   SL+   G A   +   R    L   G+ PD
Sbjct: 1014 MEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPD 1067



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 111/247 (44%), Gaps = 7/247 (2%)

Query: 67   HGKTGSSPKSYIWVNPKSPRASKLKEKSYD------TRAGNVEMAFGLYDRARNEKWRID 120
            HGK+G   + +        R  K    +Y+       ++ N++ A   +    +  +R  
Sbjct: 833  HGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPT 892

Query: 121  PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
            P  +  LI      G  +  + ++EEM   G KPN   +N L++  G+         ++K
Sbjct: 893  PRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFK 952

Query: 181  EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
             M + G+ P+  +Y  L+     A   ++ L  + E+K  G+      YN ++       
Sbjct: 953  RMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQ 1012

Query: 241  YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +EA  ++ +M++     PD +T++S++      G V +A+ M+ E+  AG EP++F  
Sbjct: 1013 RMEEALALYNEMRN-RGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTY 1071

Query: 301  TSLIQCY 307
             +LI+ Y
Sbjct: 1072 NALIRGY 1078



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 113/243 (46%), Gaps = 1/243 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           VE    +++  + +  R D + + T+ K     G       V  +M+  G   N  +YN 
Sbjct: 138 VEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNG 197

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+  + ++    +   +Y+ M   GL P+  TY++L+ A G+ R  E  + + +EM++ G
Sbjct: 198 LIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLG 257

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +V  +   + +    G  DEA+EIF  M   E C PD  T++ +I      G++  A
Sbjct: 258 LRPNVYTFTICIRVLGRAGKIDEAYEIFRRM-DDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           + +F +M   G +P+  +  +L+  +      D      +++   G  PD      L++V
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDV 376

Query: 342 MTQ 344
           + +
Sbjct: 377 LCK 379



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G+ E A  L+ R  NE  R D  +++ L+     AG  D  L  + E+K+ G+ P+ I
Sbjct: 940  KIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFI 999

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             YN +++ +G+++R  +   +Y EM + G+ P+  TY SL+   G A   E    +Y E+
Sbjct: 1000 AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYT-----DEAFEIFEDMKSSENCQPDSWTFSSM 268
            +  G++  V  YN L+      GY+     + A+ ++++M   + C P+  T++ +
Sbjct: 1060 QLAGLEPDVFTYNALIR-----GYSLSENPEHAYTVYKNM-MVDGCNPNIGTYAQL 1109



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 103/200 (51%), Gaps = 1/200 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G +E A  L++   +   + +   F+ LI  YG  G+ +    +++ M   G++P++ 
Sbjct: 905  KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLK 964

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +Y  L+D +  A R  +    + E+   GL P++  Y  ++   G+++  E+ L++Y EM
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + +G+   +  YN+L+      G  ++A  ++E+++ +   +PD +T++++I   S    
Sbjct: 1025 RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLA-GLEPDVFTYNALIRGYSLSEN 1083

Query: 278  VSEAEAMFNEMLEAGFEPNL 297
               A  ++  M+  G  PN+
Sbjct: 1084 PEHAYTVYKNMMVDGCNPNI 1103



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 1/184 (0%)

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
           K +G+ P + +YN L+  +       +   ++K+M + G +P+  T+  LL  +G++   
Sbjct: 780 KKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKI 839

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
            +   +Y+EM  +  +     YN +++  A     D+A + F D+ SS+  +P   T+  
Sbjct: 840 TELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSD-FRPTPRTYGP 898

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I   +  G++ EA  +F EM + G +PN  +   LI  YGK   T+   +   R+   G
Sbjct: 899 LIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEG 958

Query: 328 ITPD 331
           I PD
Sbjct: 959 IRPD 962



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 128/310 (41%), Gaps = 13/310 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G V+ A  L           D    ++LI     AG  D    +++ MK + + P +
Sbjct: 518 SKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTV 577

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL  +G+  R  +   +++ M +   SPN  ++ +LL  + +    E  L ++ +
Sbjct: 578 VTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSK 637

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M     +  V  YNT++         + AF  F  +K S    PD  T  +++      G
Sbjct: 638 MTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS--MHPDHVTICTLLPGLVKCG 695

Query: 277 KVSEAEAMFNE-MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           ++ +A ++  + M +  F  N      L+         D  +     L   GI  +D F 
Sbjct: 696 QIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFL 755

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL----LLEEQDIEGDFKKEATELFNS 391
             L+ V+ +  +E      +  +K   KLG    L     L  + +E  + ++A +LF  
Sbjct: 756 IPLVRVLCKHKRELYA--YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLF-- 811

Query: 392 ISKDVKKAYC 401
             KD+K   C
Sbjct: 812 --KDMKNVGC 819



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCAD 238
           +E+  NG+    +    L+R   + +       ++ +  +K G+  ++  YN L+    +
Sbjct: 741 EELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLE 800

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           V YT++A+++F+DMK+   C PD++TF+ ++ +    GK++E   ++ EM+    +P+  
Sbjct: 801 VHYTEKAWDLFKDMKNV-GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAI 859

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
               +I    K+   D  +     L      P  R  G L++ + +  + EE  +L E
Sbjct: 860 TYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFE 917



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 55/296 (18%), Positives = 110/296 (37%), Gaps = 40/296 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG V+ A+ ++DR ++ K       ++TL+   G  G     + ++E M      PN I
Sbjct: 554 KAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTI 613

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---------------- 201
           ++N LLD   +         ++ +MT     P+  TY +++                   
Sbjct: 614 SFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL 673

Query: 202 ----------------GRARYGE--DTLSVYRE-MKEKGMQLSVTLYNTLLAMCADVGYT 242
                           G  + G+  D +S+ R+ M +   +++ + +  L+         
Sbjct: 674 KKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEM 733

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D+A    E++  +  C+ DS+    +  +C  + ++   +       + G  P L     
Sbjct: 734 DKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNC 793

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           LI    +   T+        +  +G  PD      LL V  ++     GK+ E  E
Sbjct: 794 LIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKS-----GKITELFE 844


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 128/251 (50%), Gaps = 15/251 (5%)

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           E M+++GV P ++TYN L+D   + ++  +   I +EMT  G  PN  TY + L  +G  
Sbjct: 69  ETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFL--HGLC 126

Query: 205 RYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +YG  +D L+++R M EK ++L V  Y TL+      G   EA+ + ++M++S  C P  
Sbjct: 127 KYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS-GCVPKP 185

Query: 263 WTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             ++++++   C+G +++EA  +F  M  +G  P+      ++  Y +  R DD +  L 
Sbjct: 186 GCYNAILSWL-CKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQ 244

Query: 322 RLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQD--- 376
           ++   G+ P +     L++ + +  +  E    L E + +  S       L+ ++Q    
Sbjct: 245 QMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALMRKQQTDDS 304

Query: 377 ---IEGDFKKE 384
              +E D++KE
Sbjct: 305 NLVVELDYRKE 315



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ A  L+     +K R+D   ++TLI     AG      ++ +EM+  G  P    Y
Sbjct: 129 GKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCY 188

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +L  + +  R  +   ++K MT +G+ P+W T+  ++  Y R    +D L + ++MK 
Sbjct: 189 NAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKS 248

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            G+     +YNTL+      G   EA+ + ++M  S    P+S T++ M
Sbjct: 249 AGLAPREVIYNTLIDALNRAGRVSEAYRLLQEM-ISRGLSPNSRTYALM 296



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 1/184 (0%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           M   G  P ++T+  L+D + +A R      + + M + G  PN   +  ++ A  +   
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
             +       M+  G+  ++  YN L+           A EI ++M +    +P+  T++
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEM-TGRGHEPNHVTYN 119

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           + +      GKV +A A+F  M E     +++  T+LI    +A +  +    L+ +   
Sbjct: 120 TFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS 179

Query: 327 GITP 330
           G  P
Sbjct: 180 GCVP 183



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           S+  +   +  A  L+ R        D   F  ++  Y      D  L + ++MK+ G+ 
Sbjct: 193 SWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLA 252

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           P  + YN L+D + RA R  +   + +EM   GLSPN  TYA
Sbjct: 253 PREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYA 294



 Score = 45.1 bits (105), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 9/198 (4%)

Query: 34  SFYSKTSLQKRSVSLQE-TQSSNPTKHSQNPQYPHG--KTGSSPKSYIWVNPKSPRASKL 90
            F  +  L +    LQE T   +   H     + HG  K G    +       + +  +L
Sbjct: 89  GFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRL 148

Query: 91  KEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 144
               Y T      +AG +  A+ L D   N      P  ++ ++         +    ++
Sbjct: 149 DVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLF 208

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           + M   G+ P+ +T+  ++    R  R      + ++M   GL+P    Y +L+ A  RA
Sbjct: 209 KRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRA 268

Query: 205 RYGEDTLSVYREMKEKGM 222
               +   + +EM  +G+
Sbjct: 269 GRVSEAYRLLQEMISRGL 286



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 3/151 (1%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVG 240
           M + G  P   T+  L+    +A    D   +   M E+G   +  ++N ++ A+C + G
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKE-G 59

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            + EA+   E M+S     P   T++ +I       K+  A  +  EM   G EPN    
Sbjct: 60  RSAEAYGFIETMRSM-GVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTY 118

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + +    K  + DD +     + E  I  D
Sbjct: 119 NTFLHGLCKYGKVDDALALFRAMTEKKIRLD 149


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 113/220 (51%), Gaps = 2/220 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  +Y+       R +   ++ LI  YG A + +  + +Y ++      P+++
Sbjct: 298 KAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVV 357

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+++L+D   R  +    K I+KEM  + + PN  T++ ++ +  +     + L + RE+
Sbjct: 358 TFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILREL 417

Query: 218 KEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             +  +     +YN ++ +    G  DEA  I  DMK  + C PD +T++ +I     +G
Sbjct: 418 NMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMK-EKGCHPDKYTYTILIIGHCMKG 476

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           ++ EA  +F++M+EAG  P+   + S + C  KA   ++V
Sbjct: 477 RIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEV 516



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 110/225 (48%), Gaps = 6/225 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA  ++++I  Y  AG  +  ++VY +M   G +PN +TYN L++  G+A        +
Sbjct: 284 PNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRM 343

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y+++      P+  T++SL+  Y R    +D   +++EM    +Q +V  ++ ++     
Sbjct: 344 YRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCK 403

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
              + EA +I  ++    +  P ++ ++ +I I    GKV EA  +  +M E G  P+ +
Sbjct: 404 QNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKY 463

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLL 339
             T LI  +    R  + +   +++ E G  PD    + F  C+L
Sbjct: 464 TYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVL 508



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 10/260 (3%)

Query: 88  SKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT-AGNFDGCLNVYEE 146
           S +   ++  R+G    A  L+D+  ++   +    F + +    T AG  D    +  +
Sbjct: 110 SYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAASTLLTK 169

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRAR 205
              +G       YN LL+++    R      +++    +GL SP+  ++  +++   R  
Sbjct: 170 GSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMG 229

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             +  L +   M E G       +N L+         ++  E+   ++    C P++ T+
Sbjct: 230 NFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTY 289

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           +S+I+     GK+ +A +++N+MLE+G  PN      LI  YGKA   +  VR   +L  
Sbjct: 290 TSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLIL 349

Query: 326 LGITPD--------DRFCGC 337
               PD        D +C C
Sbjct: 350 RHCPPDVVTFSSLIDGYCRC 369


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 3/214 (1%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           P+ F+   LI  +   GN    L ++E M   GV+  ++TY +L+  + +  +  +   +
Sbjct: 212 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKL 271

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E    G+ P+   Y +L+ ++  +   +    +  EM++K +      YNTL+     
Sbjct: 272 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 331

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +G  DEA ++ ++M +    QPD  T++++I+  S +G V +A  + NEM+  GF P L 
Sbjct: 332 LGRVDEARKLIDEM-TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLL 390

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              +LIQ   K  + DD    +  + E GITPDD
Sbjct: 391 TYNALIQGLCKNGQGDDAENMVKEMVENGITPDD 424



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 7/209 (3%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           H K G+  K+       S R  +    +Y +      + G V+    L+D A     R D
Sbjct: 224 HCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPD 283

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              ++ LI  + T+GN D    +  EM+   + P+ +TYN L+  +    R  + + +  
Sbjct: 284 LVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 343

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EMT  G+ P+  TY +L+  Y      +D L +  EM  KG   ++  YN L+      G
Sbjct: 344 EMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 403

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
             D+A  + ++M  +    PD  T+ S+I
Sbjct: 404 QGDDAENMVKEMVEN-GITPDDSTYISLI 431



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 13/228 (5%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKT 177
           PNA  ++T+I  + + G     L++  EM+  G + PN  TY  ++    +  R  +   
Sbjct: 70  PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 129

Query: 178 IYKEMTDNG-LSPNWNTYASLLRAY---GRARYGEDTLSVYRE-MKEKGMQLSVTLYNTL 232
           ++ EM   G + P    Y +L+  Y   G+     DT  +YR+ M E+G+ ++V  YN L
Sbjct: 130 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKL----DTALLYRDRMVERGVAMTVATYNLL 185

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G   EA+E+ E+M   +   PD +T++ +I      G V +A  +F  M   G
Sbjct: 186 VHALFMDGRGTEAYELVEEM-GGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 244

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
               +   TSLI    K  +  +  +  +     GI PD      L+N
Sbjct: 245 VRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 292



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 12/207 (5%)

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           T+  +LR    A      L + R+M       +   YNT++A     G    A +I  +M
Sbjct: 43  TFNIMLRHLCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREM 98

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQ 311
           +      P+ +T+ ++I+     G+V EA  +F+EML  G  +P   +  +LI  Y    
Sbjct: 99  RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 158

Query: 312 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG---YV 367
           + D  +   +R+ E G+         L++ +    +  E  +LVE  E     L    + 
Sbjct: 159 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE--EMGGKGLAPDVFT 216

Query: 368 VKLLLEEQDIEGDFKKEATELFNSISK 394
             +L+     EG+ KK A E+F ++S+
Sbjct: 217 YNILINGHCKEGNVKK-ALEIFENMSR 242


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 2/247 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ LI     AG  +  L ++ +M      P + TY  L+  +  + R  +   ++ EM
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            + G  PN +TY  L+    +    ++   +  EM EKG+  SV  YN L+      G  
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D+AFEI  D+  S +C P++ T++ +I     + KV +A A+ N+MLE    P+L    S
Sbjct: 386 DDAFEIL-DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361
           LI    K    +   R L+ + E G+ PD       ++ + +  + EE G L + V+   
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 362 SKLGYVV 368
            K   V+
Sbjct: 505 VKANEVI 511



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 1/188 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           VY E+    + PN+ T+N +++   +     + +    ++   GL P+  TY SL+  + 
Sbjct: 181 VYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHC 240

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           R +  ++   V+  M +KG Q +   Y  L+    + G  +EA ++F DM + +NC P  
Sbjct: 241 RNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADM-TEDNCCPTV 299

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++ +I   S  G+  EA  +FNEM E G EPN+   T LI    K  + D+  + L+ 
Sbjct: 300 RTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSE 359

Query: 323 LPELGITP 330
           + E G+ P
Sbjct: 360 MSEKGLIP 367



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 122/295 (41%), Gaps = 18/295 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +  ++E A+ L           D   +S  I      G  +    +++ +KA GVK N +
Sbjct: 451 KVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEV 510

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D   +  +     ++ + M ++   PN  TY  L+    + +  ++  S+  +M
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKM 570

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++ +V  Y  L+      G  D A ++F  M  S   QPD  T+++ +     +G 
Sbjct: 571 LTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHM-VSLGYQPDVCTYTAFLHAYFSQGM 629

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + E + +  +M E G  P+L   T LI  Y +   T      L  + + G  P       
Sbjct: 630 LEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSI 689

Query: 338 LL------NVMTQTPKEELGKLVECVEKSNS--------KLGYVVKLLLEEQDIE 378
           L+      N M +T + E+G  ++ V   NS         L Y + L L E+ +E
Sbjct: 690 LIKNLSHENRMKET-RSEIG--IDSVSNVNSVDIADVWKTLEYEIALKLFEKMVE 741



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 7/233 (3%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  A  L ++    K       +++LI       + +    +   M   G+ P+  TY+ 
Sbjct: 420 VHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            +DT+ +  R  +  T++  +   G+  N   Y +L+  Y +    +   S+   M    
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
              +   YN L+          EA  +   M +    +P   T++ +I      G    A
Sbjct: 540 CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM-GVKPTVVTYTILIGEMLKDGAFDHA 598

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPD 331
             +FN M+  G++P++   T+ +  Y   G  +  DDV+  +N   E GI PD
Sbjct: 599 LKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN---EEGILPD 648



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 2/165 (1%)

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++++M ++G + + + Y +L+  + +    E+   +   MKE+GM  S  +YN+LL  C 
Sbjct: 735 LFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCC 794

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            +G   EA  + + M  +    P   ++  ++      G   +A+A+F+ +L  G+  + 
Sbjct: 795 KLGVYAEAVRLVDAMVEN-GLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDE 853

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNV 341
                LI    K    D+    ++ + E   T   D  C  L+ +
Sbjct: 854 VAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADIACAALMRL 898


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 2/222 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +AF   IK +  AG     + V+E M+  G    + ++N LL  + +     +   ++  
Sbjct: 256 DAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDR 315

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M D   +P+  +Y +L+ A+  AR   +   V+ EM E G++  V ++NT++        
Sbjct: 316 MRDR-YAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQR 374

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             EA ++FE MK+ +   P+ WT++ +I     RGK+  A   F EM + G +P++   T
Sbjct: 375 RPEAVKMFELMKA-KGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYT 433

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            L+  YG A+R D V   L  + + G  PD R    L+ ++T
Sbjct: 434 CLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLT 475



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 122/256 (47%), Gaps = 5/256 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++DR R +++  D  +++ L+  +  A N      V+ EM   G+KP+++ +N +++ + 
Sbjct: 312 VFDRMR-DRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLL 370

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R +R  +   +++ M   G +PN  TY  L+R + +    +  +  + EM++ G Q  V 
Sbjct: 371 RGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVA 430

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  LL    +    D    + E+M + + C PD  T++++I + + R    +A  ++ +
Sbjct: 431 TYTCLLVGYGNAKRMDRVTALLEEM-TQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKK 489

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLN--VMTQ 344
           M++ G EP +     +++ Y    R   +  A+   +   GI PD       +N  +   
Sbjct: 490 MIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHG 549

Query: 345 TPKEELGKLVECVEKS 360
            P+E    + E ++K 
Sbjct: 550 RPEEACKYIEEMIQKG 565



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 6/198 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ LI+ +   G  D  +  +EEM+ +G +P++ TY  LL   G AKR  +V  +
Sbjct: 392 PNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTAL 451

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--MC 236
            +EMT  G  P+  TY +L++        +D   +Y++M +KG++ ++  YN ++     
Sbjct: 452 LEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFL 511

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
               Y      ++E+M     C PD  +++  I      G+  EA     EM++ G +  
Sbjct: 512 GGRNYM-MGCAVWEEMHRKGIC-PDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTP 569

Query: 297 LFVLTSLIQCYGKAQRTD 314
                     + KA + D
Sbjct: 570 QIDYNKFAADFSKAGKPD 587



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++MA   ++  ++   + D   ++ L+  YG A   D    + EEM   G  P+  
Sbjct: 406 KRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGR 465

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYR 215
           TYN L+  +     P     IYK+M   GL P  +TY  ++++Y  G   Y     +V+ 
Sbjct: 466 TYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGC-AVWE 524

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           EM  KG+   V  Y   +      G  +EA +  E+M
Sbjct: 525 EMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEM 561



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TI 178
           D   ++ LIKL       D    +Y++M   G++P + TYN ++ +     R + +   +
Sbjct: 463 DGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAV 522

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++EM   G+ P+ N+Y   +  + R    E+      EM +KGM+     YN   A  + 
Sbjct: 523 WEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSK 582

Query: 239 VGYTDEAFEIFEDMK 253
            G  D  +E+ + +K
Sbjct: 583 AGKPDILYELAQKVK 597



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)

Query: 185 NGLSPNWNTYASLLRAYGRARY--------------------------------GE--DT 210
            G +    TY  ++   G+AR                                 GE  + 
Sbjct: 215 GGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNA 274

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MI 269
           + V+  M+  G    V  +N LL   A  G   EA ++F+ M+  +   PD  ++++ M+
Sbjct: 275 VGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMR--DRYAPDLRSYTALML 332

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
             C+ R  V EA  ++NEMLE G +P++ V  ++I+   + QR  + V+    +   G  
Sbjct: 333 AWCNARNLV-EAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPA 391

Query: 330 PD 331
           P+
Sbjct: 392 PN 393


>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 367

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 115/230 (50%), Gaps = 1/230 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           VE A  ++ + +          ++TL+ +    G+ + C  +  EM+ + V PN+IT+N 
Sbjct: 97  VETAEKIFSKIKENGILPRVETYNTLLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNT 156

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LL    +  R  +   +Y+ + D GL P   TY  L++ Y RA   ++ + V+ EM+  G
Sbjct: 157 LLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVG 216

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            +  + +Y+ ++++    G  +EA  +F  ++ ++   P+  T+  +I     +GK+ E 
Sbjct: 217 CKPDLMIYSLMISVYGKAGSAEEAALVFRQLQ-NDGYIPNVVTWCCLIQAFGWQGKMQEI 275

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            A FNEML +G  P+L +   ++  YG+   +        R+   GI+P+
Sbjct: 276 GAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQAQGISPN 325



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 3/256 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A  L+D   +    +  ++F+++I  Y   G F     +YE+M   G++ + I
Sbjct: 22  RAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKAWRMYEDMVESGIQADEI 81

Query: 158 TYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           T + LL  +G+ + P +  + I+ ++ +NG+ P   TY +LL    R  + E    +  E
Sbjct: 82  TLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSVLSRGGHTERCKELEIE 141

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+   +  ++  +NTLL M    G   EA E+++ +  +   +P   T++ ++ +     
Sbjct: 142 MQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDA-GLKPTVVTYTGLVQMYCRAS 200

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  EA  +F EM   G +P+L + + +I  YGKA   ++      +L   G  P+     
Sbjct: 201 KHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWC 260

Query: 337 CLLNVMT-QTPKEELG 351
           CL+     Q   +E+G
Sbjct: 261 CLIQAFGWQGKMQEIG 276



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 129/246 (52%), Gaps = 10/246 (4%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA--- 169
           +K R+ PN   ++ ++ + G AG       +++EM + GV+  + ++N+++    R    
Sbjct: 2   QKGRLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLF 61

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS-VYREMKEKGMQLSVTL 228
           K+ W+   +Y++M ++G+  +  T ++LL   G+ +   +T   ++ ++KE G+   V  
Sbjct: 62  KKAWR---MYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVET 118

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           YNTLL++ +  G+T+   E+  +M+  E   P+  TF++++ +    G++ EA  ++  +
Sbjct: 119 YNTLLSVLSRGGHTERCKELEIEMQRLEVV-PNIITFNTLLMMHVQGGRLKEAAEVYQRI 177

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           L+AG +P +   T L+Q Y +A +  + +     +  +G  PD      +++V  +    
Sbjct: 178 LDAGLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSA 237

Query: 349 ELGKLV 354
           E   LV
Sbjct: 238 EEAALV 243



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           ++  + PN   F+TL+ ++   G       VY+ +   G+KP ++TY  L+    RA + 
Sbjct: 143 QRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKH 202

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   ++ EM   G  P+   Y+ ++  YG+A   E+   V+R+++  G   +V  +  L
Sbjct: 203 KEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCL 262

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G   E    F +M +S  C PD   ++ M+      G   +A  +F  M   G
Sbjct: 263 IQAFGWQGKMQEIGAFFNEMLAS-GCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQAQG 321

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             PN     ++IQ Y  +++  D    L+++   G +PD
Sbjct: 322 ISPNAVSYDTMIQAYCHSKQAADAQIVLDQMTRAGFSPD 360



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 104/200 (52%), Gaps = 1/200 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G ++ A  +Y R  +   +     ++ L+++Y  A      + V+ EM+ +G KP++
Sbjct: 162 VQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDL 221

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y+ ++   G+A    +   +++++ ++G  PN  T+  L++A+G     ++  + + E
Sbjct: 222 MIYSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNE 281

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G    +TLYN ++      G++ +A  +F  M+ ++   P++ ++ +MI       
Sbjct: 282 MLASGCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQ-AQGISPNAVSYDTMIQAYCHSK 340

Query: 277 KVSEAEAMFNEMLEAGFEPN 296
           + ++A+ + ++M  AGF P+
Sbjct: 341 QAADAQIVLDQMTRAGFSPD 360



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 40/78 (51%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ ++  YG  G+      ++  M+A G+ PN ++Y+ ++     +K+    + + 
Sbjct: 290 DLTLYNVMMGAYGRYGHSVQAAILFRRMQAQGISPNAVSYDTMIQAYCHSKQAADAQIVL 349

Query: 180 KEMTDNGLSPNWNTYASL 197
            +MT  G SP+ ++ A L
Sbjct: 350 DQMTRAGFSPDRSSRAML 367


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++++I  Y  AG  +  + VY +M A+G  PN++TYN L++  G+A        +
Sbjct: 303 PNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAV 362

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y++M      P+  T++SL+  Y R    +D + ++ EM +  +Q +   +  ++     
Sbjct: 363 YQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCK 422

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
              + EA    + M    +  P ++ ++ +I +    GKV EA  +  EM E G  P+ +
Sbjct: 423 QNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKY 482

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLL 339
             T LI  +    R  + V   +++ E G +PD    + F  CLL
Sbjct: 483 TYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLL 527



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 100 GNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G V+ A  L++   +   +  D  +F+ +IK     G+    L + E M   G  P+ +T
Sbjct: 212 GRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVT 271

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +N L++ + RAK   + + + + +  +G+  PN  TY S++  Y +A   ED ++VY +M
Sbjct: 272 HNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDM 331

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
              G   +V  YN L+      G    A  +++ M     C PD  TFSS+I   C C G
Sbjct: 332 VAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQM-ILRRCLPDVVTFSSLIDGYCRC-G 389

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL-PELGITPDDRFC 335
           ++ +A  ++ EM +   +PN      +I  + K  R+ + +  L ++     I P     
Sbjct: 390 QLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIY 449

Query: 336 GCLLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
             +++V+ +  K +     L+E  EK      Y   +L+    ++G    EA   F+ +
Sbjct: 450 NPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRI-AEAVTFFHKM 507



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 110/225 (48%), Gaps = 5/225 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  +Y+         +   ++ LI  YG AGN    + VY++M      P+++
Sbjct: 317 KAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVV 376

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+++L+D   R  +      I+ EM    + PN +T+  ++  + +     + L   ++M
Sbjct: 377 TFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKM 436

Query: 218 KEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             +  +     +YN ++ +    G  DEA  I  +M+  + C+PD +T++ +I     +G
Sbjct: 437 NMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEE-KGCRPDKYTYTILIIGHCMKG 495

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVR 318
           +++EA   F++M+E G  P+  V+ S I C    G     D ++R
Sbjct: 496 RIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGMPGEVDHIMR 540



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/289 (18%), Positives = 118/289 (40%), Gaps = 13/289 (4%)

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGE 208
           + + P+  +Y  ++  M ++ R      ++ +MTD +G  PN    + L  +   A   +
Sbjct: 121 LAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLD 180

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
              ++  +  + G  +    YN L+ +    G   +A  +FE         PD W+F+ +
Sbjct: 181 AAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVV 240

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I      G V +A  +   M E G  P+      L+    +A+        L RL   G+
Sbjct: 241 IKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGV 300

Query: 329 TPDDRFCGCLLNVMTQTPKE----ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384
                   C+ NV+T T       + G++ + +   N  +       +   ++  +   +
Sbjct: 301 --------CMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGK 352

Query: 385 ATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433
           A  + ++++   +     CL D+    +L++  C+  +L   ++++T++
Sbjct: 353 AGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEM 401


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 121/248 (48%), Gaps = 1/248 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  + +F +     N   R D   ++ +I  +G     D  +  ++ M + G++P+ +T+
Sbjct: 424 GEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTW 483

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   RA +  + + +++EM + G SP   T+  ++ ++G     +D  ++   M+ 
Sbjct: 484 NTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRS 543

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+  +   Y TL+ +    G  ++A E  +DMK++   +P S  ++++I   + RG   
Sbjct: 544 QGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAA-GLKPSSTMYNALINAYAQRGLSE 602

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           +A + F  M   G +P+L  L SLI  +G+ +R  +    L  + E  + PD      L+
Sbjct: 603 QAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLM 662

Query: 340 NVMTQTPK 347
             + +  K
Sbjct: 663 KALIRVEK 670



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 4/247 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A   +DR  +E    D   ++TLI  +  AG  D    ++EEM   G  P   T+N 
Sbjct: 461 LDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNI 520

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++++ G  +R   VK +   M   GL PN  TY +L+  YG++    D +    +MK  G
Sbjct: 521 MINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAG 580

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ S T+YN L+   A  G +++A   F  M+  +  +P     +S+I       + +EA
Sbjct: 581 LKPSSTMYNALINAYAQRGLSEQAVSAFRAMR-VDGLKPSLLALNSLINAFGEDRRDAEA 639

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL--- 338
             +   M E   +P++   T+L++   + ++ D V      +   G TPD +    L   
Sbjct: 640 FTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSGCTPDRKARAMLRSA 699

Query: 339 LNVMTQT 345
           L  M QT
Sbjct: 700 LKYMKQT 706



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 128/296 (43%), Gaps = 38/296 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG++  A       +     +       +I   G  G       ++EEM+  G+KP   
Sbjct: 282 KAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTR 341

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LL    +A      + +  EM  +G+SPN  TY+ L+ AYG A   E    V +EM
Sbjct: 342 AYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEM 401

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS----------------------- 254
           +   +Q +  +++ +L+   D G   ++F++  +M++                       
Sbjct: 402 EASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCL 461

Query: 255 -----------SENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                      SE  +PD+ T++++I  C CR GK   AE +F EM+E G+ P       
Sbjct: 462 DHAMATFDRMLSEGIEPDTVTWNTLID-CHCRAGKHDRAEELFEEMMEGGYSPCNTTFNI 520

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           +I  +G  +R DDV   L  +   G+ P+      L+++  ++ +      +EC++
Sbjct: 521 MINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGR--FNDAIECLD 574



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           LY     +K  +D    + +I  +  AG+    L     ++  G+     T   ++  +G
Sbjct: 257 LYREIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALG 316

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
              R  + + I++EM DNGL P    Y +LLR Y +A   +D   V  EM+  G+  +  
Sbjct: 317 NCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQ 376

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y+ L+    + G  + A  + ++M++S N QP+++ FS +++    +G+  ++  +  E
Sbjct: 377 TYSFLIDAYGNAGRWESARIVLKEMEAS-NVQPNAYVFSRILSSYRDKGEWQKSFQVLRE 435

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M  +G  P+      +I  +GK    D  +   +R+   GI PD
Sbjct: 436 MENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPD 479



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG  + A  L++      +      F+ +I  +G    +D   N+   M++ G+ PN +
Sbjct: 492 RAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSV 551

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  G++ R         +M   GL P+   Y +L+ AY +    E  +S +R M
Sbjct: 552 TYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAM 611

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G++ S+   N+L+    +     EAF + + MK ++  +PD  T+++++       K
Sbjct: 612 RVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKEND-LKPDVVTYTTLMKALIRVEK 670

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +  +++ EM+ +G  P+
Sbjct: 671 FDKVPSVYEEMILSGCTPD 689



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 122/267 (45%), Gaps = 7/267 (2%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL--SVY 214
           +TYN L+    R     +   +   M  +G   ++  Y+ ++R+  R    +  +   +Y
Sbjct: 199 LTYNALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLY 258

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           RE++   ++L V L N ++   A  G   +A E    ++ S      +   + +  + +C
Sbjct: 259 REIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNC 318

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+  EAEA+F EM + G +P      +L++ Y KA    D    ++ +   G++P+++ 
Sbjct: 319 -GRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQT 377

Query: 335 CGCLLNVMTQTPKEELGKLV-ECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSI 392
              L++      + E  ++V + +E SN +   YV   +L     +G+++K    L    
Sbjct: 378 YSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREME 437

Query: 393 SKDVK--KAYCNCLIDLCVNLNLLENA 417
           +  V+  + + N +ID     N L++A
Sbjct: 438 NSGVRPDRVFYNVMIDTFGKFNCLDHA 464


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 130/261 (49%), Gaps = 3/261 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A+ +Y++  +   R +   +++LIK +   G  +    +Y++M      P++ 
Sbjct: 459 KVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQ 518

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D M +A  P + + +++E+      P+  +Y+ L+    +A +  +T  ++  M
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM 578

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G  L    YN ++      G  ++A+++ E+MK ++  +P   T+ S+I   +   +
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK-TKGFEPTVVTYGSVIDGLAKIDR 637

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F E      E N+ + +SLI  +GK  R D+    L  L + G+TP+      
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNS 697

Query: 338 LLNVMTQTPKEELGKLVECVE 358
           LL+ + +   EE+ + + C +
Sbjct: 698 LLDALVKA--EEINEALVCFQ 716



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 3/240 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G V+ A  L D  ++     D   ++  I  +G  G  D     + E++A G+KP+ 
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDE 273

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++  + +A R  +   +++ +  N   P    Y +++  YG A   ++  S+   
Sbjct: 274 VTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + KG   SV  YN +L     +G  DEA ++FE+MK  ++  P+  T++ +I +    G
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK--KDAAPNLSTYNILIDMLCRAG 391

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 335
           K+  A  + + M +AG  PN+  +  ++    K+Q+ D+       +     TPD+  FC
Sbjct: 392 KLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFC 451



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 98/189 (51%), Gaps = 1/189 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A++++  ++   +S+LI  +G  G  D    + EE+   G+ PN+ T+N+LLD
Sbjct: 641 AYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLD 700

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M +   +PN  TY  L+    + R        ++EM+++GM+ 
Sbjct: 701 ALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKP 760

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S   Y T+++  A  G   EA  +F+  K++    PDS  +++MI   S   +  +A ++
Sbjct: 761 STISYTTMISGLAKAGNIAEAGALFDRFKANGGV-PDSACYNAMIEGLSNGNRAMDAFSL 819

Query: 285 FNEMLEAGF 293
           F E    G 
Sbjct: 820 FEETRRRGL 828



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 3/235 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG     + L+   + +   +D  A++ +I  +   G  +    + EEMK  G +P ++
Sbjct: 564 KAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVV 623

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY +++D + +  R  +   +++E     +  N   Y+SL+  +G+    ++   +  E+
Sbjct: 624 TYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEEL 683

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
            +KG+  ++  +N+LL         +EA   F+ MK  + C P+  T+  +I  +C  R 
Sbjct: 684 MQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK-CTPNQVTYGILINGLCKVR- 741

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           K ++A   + EM + G +P+    T++I    KA    +     +R    G  PD
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPD 796



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/227 (18%), Positives = 100/227 (44%), Gaps = 1/227 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A  +   + +    R  K+R   +A++TLI  +    + D  L ++++M+ +G +P +
Sbjct: 144 VKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             +  L+    +  R     ++  EM  + L  +   Y   + ++G+    +     + E
Sbjct: 204 HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++  G++     Y +++ +       DEA E+FE ++ +    P ++ +++MI      G
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV-PCTYAYNTMIMGYGSAG 322

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           K  EA ++       G  P++     ++ C  K  + D+ ++    +
Sbjct: 323 KFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM 369



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 36/201 (17%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT------------------------ 193
           +YN+LL  M R +    +  I  EM+  G  P+ NT                        
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159

Query: 194 -----------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                      Y +L+ A+    + +  L+++++M+E G + +V L+ TL+   A  G  
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A  + ++MKSS +   D   ++  I      GKV  A   F+E+   G +P+    TS
Sbjct: 220 DSALSLLDEMKSS-SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTS 278

Query: 303 LIQCYGKAQRTDDVVRALNRL 323
           +I    KA R D+ V     L
Sbjct: 279 MIGVLCKANRLDEAVEMFEHL 299



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +  LI        F+     ++EM+  G+KP+ I+Y  ++  + +A    +   +
Sbjct: 725 PNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGAL 784

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTL 232
           +     NG  P+   Y +++          D  S++ E + +G+ +     V L +TL
Sbjct: 785 FDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTL 842


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 2/222 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +AF   IK +  AG     + V+E M+  G    + ++N LL  + +     +   ++  
Sbjct: 256 DAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDR 315

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M D   +P+  +Y +L+ A+  AR   +   V+ EM E G++  V ++NT++        
Sbjct: 316 MRDR-YAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQR 374

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             EA ++FE MK+ +   P+ WT++ +I     RGK+  A   F EM + G +P++   T
Sbjct: 375 RPEAVKMFELMKA-KGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYT 433

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            L+  YG A+R D V   L  + + G  PD R    L+ ++T
Sbjct: 434 CLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLT 475



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 122/256 (47%), Gaps = 5/256 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++DR R +++  D  +++ L+  +  A N      V+ EM   G+KP+++ +N +++ + 
Sbjct: 312 VFDRMR-DRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLL 370

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R +R  +   +++ M   G +PN  TY  L+R + +    +  +  + EM++ G Q  V 
Sbjct: 371 RGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVA 430

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  LL    +    D    + E+M + + C PD  T++++I + + R    +A  ++ +
Sbjct: 431 TYTCLLVGYGNAKRMDRVTALLEEM-TQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKK 489

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLN--VMTQ 344
           M++ G EP +     +++ Y    R   +  A+   +   GI PD       +N  +   
Sbjct: 490 MIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHG 549

Query: 345 TPKEELGKLVECVEKS 360
            P+E    + E ++K 
Sbjct: 550 RPEEACKYIEEMIQKG 565



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 6/178 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ LI+ +   G  D  +  +EEM+ +G +P++ TY  LL   G AKR  +V  +
Sbjct: 392 PNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTAL 451

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--MC 236
            +EMT  G  P+  TY +L++        +D   +Y++M +KG++ ++  YN ++     
Sbjct: 452 LEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFL 511

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
               Y      ++E+M     C PD  +++  I      G+  EA     EM++ G +
Sbjct: 512 GGRNYM-MGCAVWEEMHRKGIC-PDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMK 567



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++MA   ++  ++   + D   ++ L+  YG A   D    + EEM   G  P+  
Sbjct: 406 KRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGR 465

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYR 215
           TYN L+  +     P     IYK+M   GL P  +TY  ++++Y  G   Y     +V+ 
Sbjct: 466 TYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGC-AVWE 524

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           EM  KG+   V  Y   +      G  +EA +  E+M
Sbjct: 525 EMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEM 561



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TI 178
           D   ++ LIKL       D    +Y++M   G++P + TYN ++ +     R + +   +
Sbjct: 463 DGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAV 522

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
           ++EM   G+ P+ N+Y   +  + R    E+      EM +KGM+     YN   A
Sbjct: 523 WEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAA 578



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)

Query: 185 NGLSPNWNTYASLLRAYGRARY--------------------------------GE--DT 210
            G +    TY  ++   G+AR                                 GE  + 
Sbjct: 215 GGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNA 274

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MI 269
           + V+  M+  G    V  +N LL   A  G   EA ++F+ M+  +   PD  ++++ M+
Sbjct: 275 VGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMR--DRYAPDLRSYTALML 332

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
             C+ R  V EA  ++NEMLE G +P++ V  ++I+   + QR  + V+    +   G  
Sbjct: 333 AWCNARNLV-EAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPA 391

Query: 330 PD 331
           P+
Sbjct: 392 PN 393


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 4/228 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+++I  Y  AG  +  + VY +M A G+ PN +TYN L++  G+         +
Sbjct: 151 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 210

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y++MT     P+  T++SL+  Y R    +D L ++ +M +  +Q +V  ++ ++     
Sbjct: 211 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 270

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNL 297
              +DEA  +  ++    +  P ++ ++ +I  +C C GKV EA  +   M E G  P+ 
Sbjct: 271 QNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKC-GKVDEANLIRKGMEEKGCRPDK 329

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +  T LI  Y    R  + +   + + E G +PD     C ++ + + 
Sbjct: 330 YTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKA 377



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 9/227 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKTI 178
           D    S L+     A   D    +  +    G +     YN L+ ++ GR +    V   
Sbjct: 10  DARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALF 69

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            + + D   SP+  ++  +++   R    +  L +   M E G       +N L+     
Sbjct: 70  ERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCR 129

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                   E+   ++    C P+  TF+S+I+     GK+ +A A++N+M+ +G  PN  
Sbjct: 130 TNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTV 189

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCGC 337
               LI  YGK       V    ++  L   PD        D +C C
Sbjct: 190 TYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRC 236



 Score = 39.7 bits (91), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 14/166 (8%)

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           T  G SP+    + L+ +   A   + + ++  +  E G ++    YN L++     G  
Sbjct: 3   THYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRV 62

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +   +FE         PD W+F+ +I      G+V +A  +   M E G  P+      
Sbjct: 63  HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 122

Query: 303 LIQCYGKAQRTDDVVRA---LNRLPELGITPDDRFCGCLLNVMTQT 345
           L+       RT++V R    L RL   G+        C+ NV+T T
Sbjct: 123 LVD---GLCRTNEVSRGHEVLRRLQRDGV--------CMPNVVTFT 157


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 107/210 (50%), Gaps = 3/210 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           F  +IK     G  +    V +EM  I  G+ P++IT+N++LD + + +R      ++K 
Sbjct: 174 FGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKR 233

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
             + G  PN  TY++L+    +    ++ L +  +M E G + +   Y+T++     VG 
Sbjct: 234 ALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGR 293

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A  +   M+ +  C PD+ T++++I     R ++ EA  +  EMLEAGF P++   T
Sbjct: 294 MEDAVVVLRQMRDA-GCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYT 352

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +L     ++ R D+ V  L+ +   G  P+
Sbjct: 353 TLCHGLCRSGRFDEAVEILDYMAARGCAPN 382



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 2/228 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ RA     R +   +STLI         D  L +  +M  +G + N +TY+ ++D
Sbjct: 227 AHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVD 286

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +  R      + ++M D G  P+  TY +L+  + + +   + + + REM E G   
Sbjct: 287 GLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHP 346

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           SV  Y TL       G  DEA EI + M ++  C P++ T+SS++      G+V+EA   
Sbjct: 347 SVVTYTTLCHGLCRSGRFDEAVEILDYM-AARGCAPNAITYSSIVDGLCKAGRVTEALGY 405

Query: 285 FNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           F +M  +    P++   ++LI    KA + D+    L R+   G  PD
Sbjct: 406 FEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPD 453



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 121/269 (44%), Gaps = 9/269 (3%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V+ A  L+ +  ++    D   +  LI   G         +++EE +A G  P ++TYN 
Sbjct: 11  VDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNT 70

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           ++D + +  R     T+Y +M  + G  P   TY++L+    R    +    +  EM  +
Sbjct: 71  MIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGR 130

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   +   YNTL+      G + EAF + E M ++  C P+  TF  +I      G++  
Sbjct: 131 GCAPNAVTYNTLVNALLGQGRSKEAFSLLEQM-AANGCPPELITFGLIIKGLCKEGEIEA 189

Query: 281 AEAMFNE--MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
           A  + +E  M+E+G  P++    S++    K QR  D      R  E G  P+      L
Sbjct: 190 AFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTL 249

Query: 339 LNVMTQTPKEE-----LGKLVECVEKSNS 362
           ++ +++  K +     L K+VE   ++N+
Sbjct: 250 IDGLSKMAKMDEALQLLAKMVELGCRANT 278



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 8/226 (3%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R +   +ST++      G  +  + V  +M+  G  P+ +TYN L+D   + +R  +   
Sbjct: 275 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVG 334

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + +EM + G  P+  TY +L     R+   ++ + +   M  +G   +   Y++++    
Sbjct: 335 LLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLC 394

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G   EA   FE M   E   P    +S++I      GK+ EA      M+ AG  P++
Sbjct: 395 KAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDV 454

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
              + LI     A R D  +     + E G  PD        DR C
Sbjct: 455 VTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLC 500



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 116/264 (43%), Gaps = 2/264 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  +  + R+     D   ++TLI  +         + +  EM   G  P+++
Sbjct: 290 KVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVV 349

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L   + R+ R  +   I   M   G +PN  TY+S++    +A    + L  + +M
Sbjct: 350 TYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 409

Query: 218 -KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            +++ +   V  Y+ L+      G  DEA+E  E M  +    PD  TFS +I      G
Sbjct: 410 ARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRI-PDVVTFSILINGLCDAG 468

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++     +F  M E G  P++    +L+    +A R D+      ++   G++PD     
Sbjct: 469 RIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRR 528

Query: 337 CLLNVMTQTPKEELGKLVECVEKS 360
            +++ + +  ++E  K ++  E S
Sbjct: 529 TMIHGLLEVNRDEDAKRIQDEENS 552



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 79/170 (46%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++D + ++++  +  T++K+M D  + P+  TY +L+   G+ R  ++   ++ E + KG
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
              +V  YNT++      G  + A  +++DM      +P   T+S++I       +V + 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +  EM   G  PN     +L+       R+ +    L ++   G  P+
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPE 170


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 112/215 (52%), Gaps = 5/215 (2%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DPN   ++ LI  +  A   +  + + EEM+  G  PN++TYN L+D + +       + 
Sbjct: 54  DPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQD 113

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMC 236
           + K+M + G +PN  T+ SL+  + +    +D   +   M  KGM+ +V  Y+ L+  +C
Sbjct: 114 VVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC 173

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
               +  EA E+ E+MK+S    PD++T+S++I       K+ EAE M   M  +G  P+
Sbjct: 174 KSQKFL-EAKEVLEEMKAS-GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + V +S+I  + K+ +  +  + L  + +   +PD
Sbjct: 232 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 266



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 4/233 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG++  A  L +  ++  +  D    + +I     AG+ DG ++    ++++G  PN++T
Sbjct: 3   AGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD---HLRSMGCDPNVVT 59

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    RAK+  +   + +EM + G  PN  TY  L+ A  +         V ++M 
Sbjct: 60  YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 119

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E G   +V  +N+L+      G  D+A ++   M  ++  +P+  T+S++I       K 
Sbjct: 120 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM-VAKGMRPNVVTYSALIDGLCKSQKF 178

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EA+ +  EM  +G  P+ F  ++LI    KA + ++  + L R+   G TPD
Sbjct: 179 LEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 117/228 (51%), Gaps = 12/228 (5%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F++L+  +   GN D    +   M A G++PN++TY+ L+D + ++++  + K +
Sbjct: 125 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEV 184

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM  +G++P+  TY++L+    +A   E+   + R M   G    V +Y++++     
Sbjct: 185 LEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCK 244

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 297
            G   EA +  ++M+      PD  T++++I      GK++EA+ + ++M E+G   P++
Sbjct: 245 SGKLLEAQKTLQEMRKQRK-SPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDV 303

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCGC 337
              +++I    K+    +  + L+R+ + G  PD        D  C C
Sbjct: 304 VTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC 351



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 117/270 (43%), Gaps = 37/270 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GNV+ A  L      +  R +   +S LI     +  F     V EEMKA GV P+  
Sbjct: 139 KRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAF 198

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+  + +A +  + + + + M  +G +P+   Y+S++ A+ ++    +     +EM
Sbjct: 199 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 258

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT------- 270
           +++     V  YNT++     +G   EA  I + M+ S +  PD  T+S++I        
Sbjct: 259 RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDM 318

Query: 271 -----------------------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
                                        +C C G++ EAE +   M  AG  PN+   T
Sbjct: 319 LVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC-GRLEEAEYLLQGMKRAGCAPNVVTYT 377

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +LI    KA++ D+  R +  +   G  P+
Sbjct: 378 TLISGLCKARKVDEAERVMEEMRNAGCPPN 407



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 108/230 (46%), Gaps = 4/230 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  +E A  +  R        D   +S++I  +  +G         +EM+     P+++
Sbjct: 209 KADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVV 268

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D + +  +  + + I  +M ++G + P+  TY++++    ++    +   +   
Sbjct: 269 TYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDR 328

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           M + G    V  Y T++      G  +EA  + + MK +  C P+  T++++I+ +C  R
Sbjct: 329 MCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA-GCAPNVVTYTTLISGLCKAR 387

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
            KV EAE +  EM  AG  PNL    +++     + R  +  + + R+ +
Sbjct: 388 -KVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 436



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 1/147 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           + + M   G  P+++TY  ++D + +  R  + + + + M   G +PN  TY +L+    
Sbjct: 325 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLC 384

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPD 261
           +AR  ++   V  EM+  G   ++  YNT++      G   EA ++ + MK     C PD
Sbjct: 385 KARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPD 444

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEM 288
           + T+ +++        V EAE +  +M
Sbjct: 445 AATYRTIVNALMSSDLVQEAEQLLEQM 471


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 6/206 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-- 176
           PNA  F+TLI     AG +   +  ++EM   GVKP ++TYN L+D + +A++  ++K  
Sbjct: 396 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEA 455

Query: 177 -TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
            T++  M + G  P+  TY++L+   G+A   +D   +   M+ KG   +V  YN+L++ 
Sbjct: 456 ITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISG 515

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              +   DEA E+F  M   + C PD+ T+ ++I+    +  V +A A+F+  LEAG  P
Sbjct: 516 LCGLDKVDEALELFVAM-VEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVP 574

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALN 321
              +  SLI       R D+ ++ L 
Sbjct: 575 TSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 112/235 (47%), Gaps = 7/235 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +  A  LY+R     +  D   ++TL+  +   G  D  L +++     G  P+++T
Sbjct: 98  GGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVT 157

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREM 217
           YN L++   +A +  + + I + M    L P+  TY SL+    +  R  E  + +    
Sbjct: 158 YNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIV--- 214

Query: 218 KEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            +KG   +V  Y+TL++ +C ++   + A ++ E M  +  C+PD  +++++I   +   
Sbjct: 215 -DKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLN-GCKPDIVSYNALIHGLAREQ 272

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            VSEA  +F  +L  G+EP +     LI    K  R ++     + L + G+ PD
Sbjct: 273 GVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPD 327



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 112/246 (45%), Gaps = 4/246 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  AF L+          D   ++  I     AG  +  L + ++M   G  P+++++N 
Sbjct: 309 VNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNA 368

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +++ + + KR  + + +   M   G SPN  ++ +L+    RA   +  ++ ++EM ++G
Sbjct: 369 VINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRG 428

Query: 222 MQLSVTLYNTLL-AMCA--DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           ++ +V  YN L+  +C     G   EA  +F+ M       PD  T+S++I      GK+
Sbjct: 429 VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV-PDVVTYSALIDGLGKAGKL 487

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            +A  +   M   G  PN++   SLI       + D+ +     + E G  PD    G +
Sbjct: 488 DDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTI 547

Query: 339 LNVMTQ 344
           ++ + +
Sbjct: 548 ISALCK 553



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 5/217 (2%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           K   D + F+  I     A        V++ M+  G  PN ITYN LL  +    R    
Sbjct: 45  KGLCDISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDA 104

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + +Y+ M   G SP+  TY +LL  + +    ++ L ++    ++G    V  YN L+  
Sbjct: 105 QALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALING 164

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
                  DEA  I + M  SE+  PD  T++S++      G+V EA  +   +++ GF P
Sbjct: 165 FCKADKLDEAQRILQRM-VSESLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSP 220

Query: 296 NLFVLTSLIQCYGKA-QRTDDVVRALNRLPELGITPD 331
           N+   ++LI    +  +R +   + L ++   G  PD
Sbjct: 221 NVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPD 257



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 4/187 (2%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           M+A G  PN I++N L+    RA +  +  T +KEM   G+ P   TY  L+    +AR 
Sbjct: 389 MEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ 448

Query: 207 G---EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
               ++ ++++  M EKG    V  Y+ L+      G  D+A  +   M++ + C P+ +
Sbjct: 449 EGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEA-KGCIPNVY 507

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T++S+I+      KV EA  +F  M+E G  P+     ++I    K +  D  +   +  
Sbjct: 508 TYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGS 567

Query: 324 PELGITP 330
            E G+ P
Sbjct: 568 LEAGVVP 574



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 39/219 (17%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G +P + TYN L+D + +  R  +   ++  +  +GL P+  TY   +    +A   ED 
Sbjct: 288 GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDA 347

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           L + ++M EKG    V  +N ++         DEA  +   M+ ++ C P++ +F+++I 
Sbjct: 348 LLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGME-AKGCSPNAISFNTLIC 406

Query: 271 ------------------------------------ICSCR--GKVSEAEAMFNEMLEAG 292
                                               +C  R  G++ EA  +F+ M+E G
Sbjct: 407 GQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKG 466

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             P++   ++LI   GKA + DD  R L  +   G  P+
Sbjct: 467 RVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 505



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           G ++ A  L+D A  EK R+ D   +S LI   G AG  D    +   M+A G  PN+ T
Sbjct: 450 GRIKEAITLFD-AMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYT 508

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN+L+  +    +  +   ++  M + G  P+  TY +++ A  +    +  L+++    
Sbjct: 509 YNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSL 568

Query: 219 EKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFE 250
           E G+  +  +Y +L+  +CA V   DEA ++ +
Sbjct: 569 EAGVVPTSGMYFSLIDGLCA-VARVDEALKLLQ 600



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 124/283 (43%), Gaps = 42/283 (14%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNTYAS-LLR 199
           VY+++  I   P+  T   LL ++ ++ +  +     +++   GL     +N Y S L R
Sbjct: 4   VYDKLVRI-YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCR 62

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
           A   +R G D  +V+  M++ G   +   YN LL+   + G   +A  ++E M  +    
Sbjct: 63  A---SRIG-DAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKA-GYS 117

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           PD  T+++++      GK+ EA  +F+  ++ GF P++    +LI  + KA + D+  R 
Sbjct: 118 PDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRI 177

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
           L R+    + PD      L+N + +  + +  +++  V+K  S                 
Sbjct: 178 LQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARML-IVDKGFSP---------------- 220

Query: 380 DFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
                     N I+      Y   +  LC  L  LE+A +LLE
Sbjct: 221 ----------NVIT------YSTLISGLCRELRRLESARQLLE 247


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 143/333 (42%), Gaps = 37/333 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+GNVE A   +   R      D   +++LI  Y  AGN    L ++ ++K  G+ P+++
Sbjct: 349 RSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVL 408

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LLD   R     + +   +EM + G  P+ +TY  L+    + R        + EM
Sbjct: 409 TYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEM 468

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS----------------------- 254
             KG+Q     YNT ++    +G T EAF++ E M S                       
Sbjct: 469 LSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNL 528

Query: 255 -----------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                      S+  QPD  T++ +I     RG++ EA  +F+ ML +G  P+    T  
Sbjct: 529 KDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVF 588

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG--KLVECVEKSN 361
           I  Y +            ++ E G+ P++     L++ + +  +  L      E +E+  
Sbjct: 589 IHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGL 648

Query: 362 SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
           S   Y   LL++    EG++ +EA  L++ + +
Sbjct: 649 SPNKYTYTLLIDGNCKEGNW-EEAIRLYSEMHQ 680



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 2/208 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G +E A  L DR R  K +     F+ LI  Y   G+ +    +  EM+  G+ P +
Sbjct: 279 ARKGELEKAAQLVDRMRMSK-KASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTV 337

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN ++  M R+      +  + EM   GL P+  TY SL+  Y +A   ++ L ++ +
Sbjct: 338 VTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGD 397

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K  G+  SV  YN LL     +G  +EA    ++M   + CQPD  T++ ++       
Sbjct: 398 LKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEM-VEQGCQPDVSTYTILMNGSRKVR 456

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
            ++     F+EML  G +P+ F   + I
Sbjct: 457 NLAMVREFFDEMLSKGLQPDCFAYNTRI 484



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 7/234 (2%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N+ M    +D   ++  + D  A++T I      G+      + E M + G+  + +TYN
Sbjct: 457 NLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYN 516

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREM 217
             LD + ++        ++ +M  +GL P+  TY  L+ A+   GR R   D   ++  M
Sbjct: 517 IFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARD---IFDGM 573

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+  S   Y   +      G    A+  F+ M   E  +P+  T++ +I      G+
Sbjct: 574 LVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKML-EEGVRPNEVTYNVLIHALCRMGR 632

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + A   F+EMLE G  PN +  T LI    K    ++ +R  + + + GI PD
Sbjct: 633 TNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPD 686



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 101/224 (45%), Gaps = 7/224 (3%)

Query: 94  SYDTRA------GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 147
           +Y+TR       G+   AF L +   +     D   ++  +     +GN      ++ +M
Sbjct: 479 AYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKM 538

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
            + G++P+ ITY  L+       R  + + I+  M  +GL P+  TY   + AY R    
Sbjct: 539 VSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNL 598

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
                 +++M E+G++ +   YN L+     +G T+ A++ F +M       P+ +T++ 
Sbjct: 599 YSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEML-ERGLSPNKYTYTL 657

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           +I      G   EA  +++EM + G  P+     +L + + + Q
Sbjct: 658 LIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQ 701



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 4/194 (2%)

Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           CL  + EM   GV P +   N +L  +    R   ++++Y EM   G+ P+  TY +LL 
Sbjct: 180 CLAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLD 239

Query: 200 AYGRARYGEDTLSVYREMKEK--GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           ++ R    +    + REM+ +  G   S   YN ++   A  G  ++A ++ + M+ S+ 
Sbjct: 240 SFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSK- 298

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            +  ++TF+ +IT    RG V +A A+  EM   G  P +    ++I    ++   +   
Sbjct: 299 -KASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAAR 357

Query: 318 RALNRLPELGITPD 331
                +  +G+ PD
Sbjct: 358 MKFVEMRAMGLLPD 371



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 4/198 (2%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM--TDNGLSPNWN 192
             +D   +VY EM  +G++P+++TYN LLD+  R  R  Q   + +EM     G  P+  
Sbjct: 210 ARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDV 269

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           TY  ++    R    E    +   M+    + S   +N L+      G  ++A  +  +M
Sbjct: 270 TYNVVINGLARKGELEKAAQLVDRMR-MSKKASAFTFNPLITGYFARGSVEKAGALQLEM 328

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           + +E   P   T++++I      G V  A   F EM   G  P+L    SLI  Y KA  
Sbjct: 329 E-NEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGN 387

Query: 313 TDDVVRALNRLPELGITP 330
             + +     L   G+ P
Sbjct: 388 LKEALWLFGDLKRAGLAP 405



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++  I  Y   GN       +++M   GV+PN +TYN L+  + R  R       + EM 
Sbjct: 585 YTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEML 644

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + GLSPN  TY  L+    +    E+ + +Y EM + G+      +N L     D G + 
Sbjct: 645 ERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFK-GFDEGQSK 703

Query: 244 EAFEIFEDM 252
            A +  E++
Sbjct: 704 HAIQYMENV 712



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 5/131 (3%)

Query: 163 LDTMGRAKRPWQVKTI----YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            +T  R   P    T+    ++EM  +G+ P       +LRA       +D  SVY EM 
Sbjct: 164 FNTRARNPAPSTCSTLCLAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEML 223

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGK 277
           + G++ S+  YNTLL      G  D+A ++  +M++    C P   T++ +I   + +G+
Sbjct: 224 QLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGE 283

Query: 278 VSEAEAMFNEM 288
           + +A  + + M
Sbjct: 284 LEKAAQLVDRM 294


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 9/270 (3%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPN 122
           + G   ++Y  ++    R  +  + SYDT      + G ++MA  +++   N     D  
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 183

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A+STLI      G  D    ++E+M+    +P+++T+  L+D + +  R  + + + + M
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 243

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGY 241
            D   +PN  TY+SL+    +     D   V++ M  +G++ +V  YN+L+   C   G 
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG- 302

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D A  + E+M ++  C PD  T++++I      G+  EA  +F +M      P++   +
Sbjct: 303 VDSALLLMEEMTAT-GCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYS 361

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            LI  + K +R D      + + +  + PD
Sbjct: 362 CLIGGFCKLERIDMARTLFDDMLKQAVLPD 391



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 7/234 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++MA  L+D    +    D   FSTL++ Y  AG  D    + EEM A    P++ TY +
Sbjct: 373 IDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTS 432

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+D   +  R  + + + K M   G  PN  TY +L+ A+ RA        +  EM   G
Sbjct: 433 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNG 492

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +Q +V  Y +L+      G  +EA ++ E ++  ENC+ D + +  M+      G++S A
Sbjct: 493 VQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAA 552

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQ--CYGKAQRTDDVVRALNRLPELGITPDDR 333
             +   + ++G  P   +  +LI+  C GK     ++ +A+  L E+ ++   R
Sbjct: 553 LELLEAIKQSGTPPRHDIYVALIRGLCQGK-----ELGKAMEVLEEMTLSRKSR 601



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 111/215 (51%), Gaps = 3/215 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN   +++LI  +      D  L + EEM A G  P++ITYN L+D + +  R  +  
Sbjct: 283 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 342

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++ +M     +P+  TY+ L+  + +    +   +++ +M ++ +   V  ++TL+   
Sbjct: 343 RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGY 402

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            + G  D+A  + E+M +S +C PD +T++S++      G++ EA  +   M + G +PN
Sbjct: 403 CNAGLVDDAERLLEEMVAS-DCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 461

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   T+LI  + +A +     + L  +   G+ P+
Sbjct: 462 VVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPN 496



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 95/188 (50%), Gaps = 1/188 (0%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           + +MK  G  PN  TYN L++   +  +  +   + KEM ++GL+PN  TY++++  + R
Sbjct: 30  FAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR 89

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
               +    ++R+M E G   ++  YNTLL+     G  DEA+E+ ++M+     QPD +
Sbjct: 90  QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR-ERGLQPDKF 148

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           ++ +++      GK+  A  +F +       P++   ++LI    K  R D+  +   ++
Sbjct: 149 SYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKM 208

Query: 324 PELGITPD 331
            E    PD
Sbjct: 209 RENSCEPD 216



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 5/214 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +ST+I  +      D    ++ +M   G  PN++TYN LL  + R     +   +
Sbjct: 75  PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 134

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM + GL P+  +Y +L+    +    +  L V+ +         V  Y+TL+A    
Sbjct: 135 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCK 194

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNL 297
            G  DEA ++FE M+ + +C+PD  TF++++    C+G ++ EA+ +   M +    PN+
Sbjct: 195 TGRLDEACKLFEKMREN-SCEPDVVTFTALMD-GLCKGDRLQEAQQVLETMEDRNCTPNV 252

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +SLI    K  +  D      R+   GI P+
Sbjct: 253 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 286



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 135/302 (44%), Gaps = 8/302 (2%)

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N+IT+  ++D + +A R  +  T + +M   G  PN  TY  L+  + +         + 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           +EMKE G+  +V  Y+T++         D A+++F  M  +  C P+  T++++++    
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN-GCMPNLVTYNTLLSGLCR 124

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G + EA  + +EM E G +P+ F   +L+    K  + D  ++           PD   
Sbjct: 125 NGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVA 184

Query: 335 CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
              L+  + +T + +E  KL E + +++ +   V    L +   +GD  +EA ++  ++ 
Sbjct: 185 YSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME 244

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAA 453
                   NC  ++    +L++  CK  ++    EV+  +  R      +   SL  G  
Sbjct: 245 DR------NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 298

Query: 454 LT 455
           +T
Sbjct: 299 MT 300


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 129/257 (50%), Gaps = 1/257 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++  A  L+++ +      D   ++TLI  YG  G  D  + ++EEMK +G +P++I
Sbjct: 144 KEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVI 203

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+++  + K   +    ++EM D  L PN  +Y++L+ A  +    +  +  + +M
Sbjct: 204 TYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDM 263

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+  +   Y++L+      G   EAF + ++M   E+   +  T+++++      G 
Sbjct: 264 TRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEM-LQEHVDLNIVTYTTLLDGLCEEGM 322

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           ++EAE +F  M +AG  PNL   T+LI  + K +  D  +   N + E  I PD    G 
Sbjct: 323 MNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGT 382

Query: 338 LLNVMTQTPKEELGKLV 354
           ++  +    K E  K++
Sbjct: 383 IVWGLCSESKLEECKII 399



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 135/299 (45%), Gaps = 25/299 (8%)

Query: 113 RNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           R  K+R+ P A S    +     AG  D   + + +M   G+ P + TYN ++  + +  
Sbjct: 87  RMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEG 146

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
                ++++++M   GL+P+  TY +L+  YG+    ++++ ++ EMK  G +  V  YN
Sbjct: 147 DMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYN 206

Query: 231 TLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
            L+ + C   G    AFE F +MK  ++ +P+  ++S++I      G +  A   F +M 
Sbjct: 207 ALINSFCKFKGML-RAFEFFREMK-DKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMT 264

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--- 346
             G  PN F  +SLI    KA    +     + + +  +          LN++T T    
Sbjct: 265 RVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVD---------LNIVTYTTLLD 315

Query: 347 ---KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK----KEATELFNSI-SKDVK 397
              +E +    E + ++  K G    L      I G  K     +A ELFN +  KD+K
Sbjct: 316 GLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIK 374



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 125/294 (42%), Gaps = 16/294 (5%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTL 127
           GK G +P    +    +     +K +S D        A  L++  R +  + D   + T+
Sbjct: 334 GKAGVTPNLQAYT---ALIHGHIKVRSMDK-------AMELFNEMREKDIKPDILLWGTI 383

Query: 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187
           +    +    + C  +  EMK  G+  N + Y  L+D   +A    +   + +EM D G 
Sbjct: 384 VWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGT 443

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
                T+ +L+    +    ++ +  +  M +  +Q +V +Y  L+          +A +
Sbjct: 444 EVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKK 503

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           +F++M+  +N  PD   +++MI      G   EA  M N+M+E G E +L+  TSL+   
Sbjct: 504 LFDEMQ-DKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGL 562

Query: 308 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
            +  +     + L  +   GI PD+  C  LL         ELG + E +E  N
Sbjct: 563 SQCGQVQQARKFLAEMIGKGIIPDETLCTRLLR-----KHYELGNIDEAIELQN 611



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 5/211 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           +P  ++TL+  Y  AGN    +N+ EEM+ +G +  ++T+  L+D  G  KR    + IY
Sbjct: 411 NPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALID--GLCKRGLVQEAIY 468

Query: 180 --KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
               M D+ L PN   Y +L+    +     D   ++ EM++K M      Y  ++    
Sbjct: 469 YFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNL 528

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G   EA  +   M      + D + ++S++   S  G+V +A     EM+  G  P+ 
Sbjct: 529 KHGNFQEALNMRNKMMEM-GIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDE 587

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
            + T L++ + +    D+ +   N L E G+
Sbjct: 588 TLCTRLLRKHYELGNIDEAIELQNELVEKGL 618



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN   A  L +  R+    +    F  LI      G     +  +  M    ++PN+ 
Sbjct: 424 KAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVA 483

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYR 215
            Y  L+D + +       K ++ EM D  + P+   Y +++   G  ++G  ++ L++  
Sbjct: 484 VYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMID--GNLKHGNFQEALNMRN 541

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M E G++L +  Y +L+   +  G   +A +   +M   +   PD    + ++      
Sbjct: 542 KMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEM-IGKGIIPDETLCTRLLRKHYEL 600

Query: 276 GKVSEAEAMFNEMLEAGF 293
           G + EA  + NE++E G 
Sbjct: 601 GNIDEAIELQNELVEKGL 618



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  MT   + P   +  + L    +A  G+ +   +R+M   G+  +V  YN ++     
Sbjct: 85  FLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCK 144

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    A  +FE MK      PD  T++++I      G + E+  +F EM   G EP++ 
Sbjct: 145 EGDMLTARSLFEQMKKM-GLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVI 203

Query: 299 VLTSLIQCYGK 309
              +LI  + K
Sbjct: 204 TYNALINSFCK 214


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 120/259 (46%), Gaps = 5/259 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A+ L+   +N+    +   ++ LI     +G     + ++  M   GV PN +TY
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 393

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++ +   +R      +   M  NG SPN  TY  +++ Y      +  + V   M +
Sbjct: 394 NALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G   ++  YNT++    D G T  A  I + M+    C+PD W+++ +I       K+ 
Sbjct: 454 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG-GCKPDEWSYTELICGFCKISKME 512

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +FNEM++ G  PN    T+LI  Y K ++ D     L  +   G  P+ +    L+
Sbjct: 513 SAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLI 572

Query: 340 NVMTQ----TPKEELGKLV 354
           + +T+    +  EEL K++
Sbjct: 573 HGLTKQNNFSGAEELCKVM 591



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 7/266 (2%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAF 124
           G   K+ + +N    R       +Y+T       +GN   A  + D  R+   + D  ++
Sbjct: 439 GDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSY 498

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + LI  +      +    ++ EM   G+ PN +TY  L+D   + ++     ++ + M  
Sbjct: 499 TELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKR 558

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
           +G  PN  TY  L+    +         + + M E+G+  +V  Y  ++      G T  
Sbjct: 559 SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 618

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A E+F  M   + C P+  T+SS+I      GKV EAE +F E+   G  P+      +I
Sbjct: 619 ALEMFNKM-IEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677

Query: 305 QCYGKAQRTDDVVRALNRLPELGITP 330
           + Y  + + +     L R+ + G  P
Sbjct: 678 EAYIMSGKVEHAFNFLGRMIKAGCQP 703



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 111/238 (46%), Gaps = 1/238 (0%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           D       R+   A+S L+      G     ++ Y  M + GV+PN++ YN +++ + + 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKD 228

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
                 +TI K++ ++ +SP+  TY S++  + R    +  L V+ +M ++G + +   Y
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           +TL+    D G  +EAF++  +M       P + T +  I      G   +A  +F +M 
Sbjct: 289 STLINGLCDSGRVNEAFDLIREM-ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
             G EPN++  T+LI     +      +   +R+   G+ P+      L+N++ +  +
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 1/208 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV  A  +  +    +   D   ++++I  +    + D  L V+ +M   G +PN +TY
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L++ +  + R  +   + +EM  +G+ P  +T    + A       ED   ++ +MK 
Sbjct: 289 STLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKN 348

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG + +V  Y  L++     G    A  +F  M S +   P++ T++++I I     ++ 
Sbjct: 349 KGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVFPNTVTYNALINILVENRRIK 407

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
            A  + N M   G  PN+     +I+ Y
Sbjct: 408 YAFVVLNLMGRNGCSPNIVTYNEMIKGY 435



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A  L +  +    R +   ++ LI       NF G   + + M   G+ PN++TY  
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++D + +         ++ +M + G  PN  TY+SL+RA G+    E+  +++ E++  G
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +      Y  ++      G  + AF     M  +  CQP  WT+  +I
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA-GCQPTLWTYGVLI 712



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 8/218 (3%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVG 240
           ++ +GL      Y++LL    R       +  Y  M  +G+Q ++ +YN ++ A+C D G
Sbjct: 171 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKD-G 229

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFV 299
              +A  I + +  SE   PD++T++SMI +  CR   +  A  +FN+M + G EPN   
Sbjct: 230 NVADAETIMKKVFESEM-SPDTFTYTSMI-LGHCRKHDLDSALQVFNQMAKEGCEPNTVT 287

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC-GCLLNVMTQTPKEELGKL-VECV 357
            ++LI     + R ++    +  +   GI P    C G ++ +      E+  +L V+  
Sbjct: 288 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            K      Y    L+    + G   K A  LF+ +S+D
Sbjct: 348 NKGCEPNVYTYTALISGLCVSG-LLKVAIGLFHRMSRD 384


>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
          Length = 1005

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 3/234 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  + A  +  R+  +   +D  A++T I     AG      ++Y+ M ++GV P++ TY
Sbjct: 692 GKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTY 751

Query: 160 NNLLDTMGRAKRPWQVKTIYKEM--TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           N ++   GR ++  +   ++ +   +  G+S +  TY +L+  YG+A    +   ++REM
Sbjct: 752 NTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREM 811

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G++     YN ++ + A  G   EA E+F+ M   + C PDS T+ ++I   +   K
Sbjct: 812 QEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAM-LRDGCSPDSLTYLALIRAYTQSFK 870

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EAE     M   G  P+      L+  + KA  T++  R  + L   G++PD
Sbjct: 871 FLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPD 924



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 98  RAGNVEMAFGLYDRAR--NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R   ++ A  ++++AR       +D   ++ LI  YG AG       ++ EM+  G+KP 
Sbjct: 760 RGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPG 819

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            ++YN +++    A    + + +++ M  +G SP+  TY +L+RAY ++    +      
Sbjct: 820 KVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIM 879

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M+ +G+  S   +N LL+  A  G+T+EA  ++  + S+    PD   + +M+      
Sbjct: 880 SMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSA-GLSPDVACYRTMLRGYLDY 938

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           G V +    F ++ E+  EP+ F+++S +  Y  A +  +    L+ +  LGI
Sbjct: 939 GCVEKGITFFEQIRES-VEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSLGI 990



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 4/208 (1%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           SY  +AG    A  L+   + E  +    +++ +I +Y TAG       +++ M   G  
Sbjct: 793 SYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCS 852

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ +TY  L+    ++ +  + +     M + G+ P+   +  LL A+ +A + E+   V
Sbjct: 853 PDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERV 912

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y  +   G+   V  Y T+L    D G  ++    FE ++  E+ +PD +  SS +    
Sbjct: 913 YHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQIR--ESVEPDRFIMSSAVHFYK 970

Query: 274 CRGKVSEAEAMFNEMLEAG--FEPNLFV 299
             GK  EAE + + M   G  F  NL V
Sbjct: 971 LAGKELEAEGILDSMKSLGIPFLKNLEV 998



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 7/228 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           + ++I  Y   G  +   ++YEE+   G++  +++ + ++  +    +  + + + +   
Sbjct: 646 YISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQEAENVIRRSF 705

Query: 184 DNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           ++GL  +   +NT+ + +   GR  +     S+Y  M   G+  S+  YNT++++     
Sbjct: 706 EDGLELDTVAYNTFINAMLGAGRLHFAN---SIYDRMVSLGVAPSIQTYNTMISVYGRGR 762

Query: 241 YTDEAFEIFEDMK-SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
             D+A E+F   + S      D  T++++I+     GK  EA  +F EM E G +P    
Sbjct: 763 KLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVS 822

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
              +I  Y  A    +       +   G +PD      L+   TQ+ K
Sbjct: 823 YNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFK 870



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 135/321 (42%), Gaps = 61/321 (19%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P++I Y  LL   G+  +    +  + EM + G  P+     ++L  Y R    +  LS
Sbjct: 189 QPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLS 248

Query: 213 VYREMKEKGMQLSVTLYN------------------------------------------ 230
            Y  ++E+G+  S+ ++N                                          
Sbjct: 249 FYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDFSLVKDGLVEESFKTFYEMKNLGFV 308

Query: 231 -------TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                   L+++ +  G  DEA +++EDM+      P ++T +S++T+    G  S A +
Sbjct: 309 PEEVTYSLLISLSSKTGNRDEAIKLYEDMR-YRRIVPSNYTCASLLTLYYKNGDYSRAVS 367

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           +F+EM +     +  +   LI+ YGK    +D  +      +LG+  +++    +  V  
Sbjct: 368 LFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHL 427

Query: 344 QTPK-EELGKLVECVEKSN---SKLGYVVKLLLEEQDIEGDF-KKEATELFNSISKD--V 396
            +   E+   ++E +   N   S+  Y+V  LL+   ++ D    EAT  F ++SK    
Sbjct: 428 NSGNFEKALTIMELMRSRNIWFSRFSYIV--LLQCYVMKEDLASAEAT--FQALSKTGLP 483

Query: 397 KKAYCNCLIDLCVNLNLLENA 417
               CN +++L + L+LLE A
Sbjct: 484 DAGSCNDMLNLYIKLDLLEKA 504



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 108/248 (43%), Gaps = 8/248 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G VE +F  +   +N  +  +   +S LI L    GN D  + +YE+M+   + P+ 
Sbjct: 287 VKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSN 346

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T  +LL    +     +  +++ EM  N +  +   Y  L+R YG+    ED    ++E
Sbjct: 347 YTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKE 406

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            ++ G+  +   Y  +  +  + G  ++A  I E M+ S N     +++  ++     + 
Sbjct: 407 TEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMR-SRNIWFSRFSYIVLLQCYVMKE 465

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK---AQRTDDVVRALNRLPELGITPDDR 333
            ++ AEA F  + + G  P+      ++  Y K    ++  D +  + + P   +  D  
Sbjct: 466 DLASAEATFQALSKTGL-PDAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDP---VEFDME 521

Query: 334 FCGCLLNV 341
            C  ++ V
Sbjct: 522 LCKTVMKV 529



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 108/250 (43%), Gaps = 12/250 (4%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIG 151
           S  ++ GN + A  LY+  R    RI P+ +  ++L+ LY   G++   ++++ EM+   
Sbjct: 319 SLSSKTGNRDEAIKLYEDMRYR--RIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNK 376

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           +  + + Y  L+   G+       +  +KE    GL  N  TY ++ + +  +   E  L
Sbjct: 377 IVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKAL 436

Query: 212 SVYREMKEKGMQLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           ++   M+ + +  S   Y  LL    M  D+   +  F+       S+   PD+ + + M
Sbjct: 437 TIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQAL-----SKTGLPDAGSCNDM 491

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           + +      + +A+    ++ +   E ++ +  ++++ Y K     D  + +  +   G+
Sbjct: 492 LNLYIKLDLLEKAKDFIFQIRKDPVEFDMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGL 551

Query: 329 TPDDRFCGCL 338
             D  F   L
Sbjct: 552 FKDSEFIQTL 561



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 103/267 (38%), Gaps = 25/267 (9%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           G  +     + EMK +G  P  +TY+ L+    +     +   +Y++M    + P+  T 
Sbjct: 290 GLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTC 349

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
           ASLL  Y +       +S++ EM++  +     +Y  L+ +   +G  ++A + F++ + 
Sbjct: 350 ASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQ 409

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
                 +  T+ +M  +    G   +A  +   M       + F    L+QCY   +   
Sbjct: 410 L-GLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLA 468

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEE 374
                   L + G+ PD   C  +LN+  +                       + LL + 
Sbjct: 469 SAEATFQALSKTGL-PDAGSCNDMLNLYIK-----------------------LDLLEKA 504

Query: 375 QDIEGDFKKEATELFNSISKDVKKAYC 401
           +D     +K+  E    + K V K YC
Sbjct: 505 KDFIFQIRKDPVEFDMELCKTVMKVYC 531



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%)

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A + F  MK   + QP    ++ ++ +    GK+  AE  F EMLEAG EP+     ++
Sbjct: 174 QARDFFGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTM 233

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           +  Y +  R   ++   + + E GI P
Sbjct: 234 LCTYARWGRHKAMLSFYSAVQERGIIP 260


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 3/214 (1%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           P+ F+   LI  +   GN    L ++E M   GV+  ++TY  L+  + +  +  +   +
Sbjct: 285 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 344

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E    G+ P+   Y +L+ ++  +   +    +  EM++K +      YNTL+     
Sbjct: 345 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 404

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +G  DEA ++ ++M +    QPD  T++++I+  S +G V +A  + NEM+  GF P L 
Sbjct: 405 LGRVDEARKLIDEM-TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLL 463

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              +LIQ   K  + DD    +  + E GITPDD
Sbjct: 464 TYNALIQGLCKNGQGDDAENMVKEMVENGITPDD 497



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 1/173 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G V+    L+D A     R D   ++ LI  + T+GN D    +  EM+   + P+ 
Sbjct: 333 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 392

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+  +    R  + + +  EMT+ G+ P+  TY +L+  Y      +D L +  E
Sbjct: 393 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 452

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           M  KG   ++  YN L+      G  D+A  + ++M  +    PD  T+ S+I
Sbjct: 453 MMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN-GITPDDSTYISLI 504



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 13/228 (5%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKT 177
           PNA  ++T+I  + + G     L++  EM+  G + PN  TY  ++    +  R  +   
Sbjct: 143 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 202

Query: 178 IYKEMTDNG-LSPNWNTYASLLRAY---GRARYGEDTLSVYRE-MKEKGMQLSVTLYNTL 232
           ++ EM   G + P    Y +L+  Y   G+     DT  +YR+ M E+G+ ++V  YN L
Sbjct: 203 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKL----DTALLYRDRMVERGVAMTVATYNLL 258

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G   EA+E+ E+M   +   PD +T++ +I      G V +A  +F  M   G
Sbjct: 259 VHALFMDGRGTEAYELVEEM-GGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 317

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
               +   T+LI    K  +  +  +  +     GI PD      L+N
Sbjct: 318 VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 365



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 16/259 (6%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L +Y  MK++ +  +  + + LL  +  A        ++ +M    L     T+  +LR 
Sbjct: 68  LRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRH 123

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
              A      L + R+M       +   YNT++A     G    A +I  +M+      P
Sbjct: 124 LCSAGKPARALELLRQMPRP----NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAP 179

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           + +T+ ++I+     G+V EA  +F+EML  G  +P   +  +LI  Y    + D  +  
Sbjct: 180 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 239

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG---YVVKLLLEEQ 375
            +R+ E G+         L++ +    +  E  +LVE  E     L    +   +L+   
Sbjct: 240 RDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE--EMGGKGLAPDVFTYNILINGH 297

Query: 376 DIEGDFKKEATELFNSISK 394
             EG+ KK A E+F ++S+
Sbjct: 298 CKEGNVKK-ALEIFENMSR 315


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 119/243 (48%), Gaps = 1/243 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+++ A+ + +    + +  D   ++TL+  Y   GNF   L ++ EM   GV P+++
Sbjct: 92  REGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVV 151

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+++M +A+   +    + +M   GL PN  TY +L+  + R     +   +  EM
Sbjct: 152 TYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 211

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G   SV  YN  +     +   +EA  + ++M   +   PD  ++S++I+    +G+
Sbjct: 212 TESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEM-VEKGLAPDVVSYSTIISGFCRKGE 270

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  M  EM+E G  P+    +SLIQ   + +R  +       + ++G+ PD+     
Sbjct: 271 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 330

Query: 338 LLN 340
           L+N
Sbjct: 331 LIN 333



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 108/216 (50%), Gaps = 9/216 (4%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV 175
           PN   ++TLI  Y   G  D    + + M + G++PN+I+YN +++ +   G  K  W+ 
Sbjct: 43  PNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWE- 101

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             I +EM   G +P+  TY +LL  Y +       L ++ EM   G+  SV  Y  L+  
Sbjct: 102 --ILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 159

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
                  + A E F+ M+     +P+  T++++I   S +G ++EA  + NEM E+GF P
Sbjct: 160 MCKARNLNRAMEFFDQMR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 218

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++    + I  +   +R ++ +  +  + E G+ PD
Sbjct: 219 SVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 254



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 112/234 (47%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ AFGL     ++  + +  +++ +I      G+      + EEM   G  P+ +
Sbjct: 57  KMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEV 116

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL+   +     Q   I+ EM  NG+SP+  TY +L+ +  +AR     +  + +M
Sbjct: 117 TYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM 176

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G++ +   Y TL+   +  G  +EA+ I  +M  S    P   T+++ I       +
Sbjct: 177 RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTES-GFSPSVVTYNAFIHGHCVLER 235

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + EA  +  EM+E G  P++   +++I  + +    D   +    + E G++PD
Sbjct: 236 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 289



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 109/226 (48%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A N+  A   +D+ R    R +   ++TLI  +   G  +    +  EM   G  P+++
Sbjct: 162 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 221

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN  +      +R  +   + +EM + GL+P+  +Y++++  + R    +    + +EM
Sbjct: 222 TYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEM 281

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+      Y++L+    ++    EA ++ ++M       PD +T++++I      G 
Sbjct: 282 VEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM-GLPPDEFTYTTLINAYCVEGD 340

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           +++A  + +EM+  GF P+    + LI    K  RT +  R L +L
Sbjct: 341 LNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKL 386



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 53/255 (20%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +E A G+      +    D  ++ST+I  +   G  D    + +EM   GV P+ +TY++
Sbjct: 236 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 295

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+  +   +R  +   + +EM D GL P+  TY +L+ AY         L ++ EM  KG
Sbjct: 296 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKG 355

Query: 222 -----MQLSVTL------------------------------YNTLLAMCADV------- 239
                +  SV +                              Y+TL+  C+++       
Sbjct: 356 FLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVA 415

Query: 240 --------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLE 290
                   G   EA  +FE M    N +P    ++ +I    CRG  + +A  ++ EM+ 
Sbjct: 416 LIKGFCMKGLMHEADRVFESM-VERNHKPGEAVYNVIIH-GHCRGGNLPKAFNLYKEMIH 473

Query: 291 AGFEPNLFVLTSLIQ 305
           +GF P+   + +LI+
Sbjct: 474 SGFVPHTVTVITLIK 488



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 1/164 (0%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  + +SPN  TY  L+R +      +  L  + EM+  G   +V  YNTL+     +G 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            DEAF + + M SS+  QP+  +++ +I      G + EA  +  EM   GF P+     
Sbjct: 61  IDEAFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 119

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +L+  Y K       +     +   G++P       L+N M + 
Sbjct: 120 TLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKA 163


>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27270-like [Vitis vinifera]
          Length = 1071

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 3/234 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  + A  +  R+  +   +D  A++T I     AG      ++Y+ M ++GV P++ TY
Sbjct: 758 GKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTY 817

Query: 160 NNLLDTMGRAKRPWQVKTIYKEM--TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           N ++   GR ++  +   ++ +   +  G+S +  TY +L+  YG+A    +   ++REM
Sbjct: 818 NTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREM 877

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G++     YN ++ + A  G   EA E+F+ M   + C PDS T+ ++I   +   K
Sbjct: 878 QEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAM-LRDGCSPDSLTYLALIRAYTQSFK 936

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EAE     M   G  P+      L+  + KA  T++  R  + L   G++PD
Sbjct: 937 FLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPD 990



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 148/305 (48%), Gaps = 12/305 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A  T++  Y   G     L+ Y  ++  G+ P++  +N +L ++ +     +V  ++
Sbjct: 226 DEVACGTMLCTYARWGRHKAMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDLW 285

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM D G+ PN  TY  ++ +  +    E++   + EMK  G       Y+ L+++ +  
Sbjct: 286 REMVDKGVVPNSFTYTVVISSLVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKT 345

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  DEA +++EDM+      P ++T +S++T+    G  S A ++F+EM +     +  +
Sbjct: 346 GNRDEAIKLYEDMR-YRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVI 404

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358
              LI+ YGK    +D  +      +LG+  +++    +  V   +   E+   ++E + 
Sbjct: 405 YGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMR 464

Query: 359 KSN---SKLGYVVKLLLEEQDIEGDF-KKEATELFNSISKD--VKKAYCNCLIDLCVNLN 412
             N   S+  Y+V  LL+   ++ D    EAT  F ++SK        CN +++L + L+
Sbjct: 465 SRNIWFSRFSYIV--LLQCYVMKEDLASAEAT--FQALSKTGLPDAGSCNDMLNLYIKLD 520

Query: 413 LLENA 417
           LLE A
Sbjct: 521 LLEKA 525



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 115/233 (49%), Gaps = 4/233 (1%)

Query: 98   RAGNVEMAFGLYDRAR--NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
            R   ++ A  ++++AR       +D   ++ LI  YG AG       ++ EM+  G+KP 
Sbjct: 826  RGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPG 885

Query: 156  MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             ++YN +++    A    + + +++ M  +G SP+  TY +L+RAY ++    +      
Sbjct: 886  KVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIM 945

Query: 216  EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
             M+ +G+  S   +N LL+  A  G+T+EA  ++  + S+    PD   + +M+      
Sbjct: 946  SMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSA-GLSPDVACYRTMLRGYLDY 1004

Query: 276  GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
            G V +    F ++ E+  EP+ F+++S +  Y  A +  +    L+ +  LGI
Sbjct: 1005 GCVEKGITFFEQIRES-VEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSLGI 1056



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 4/208 (1%)

Query: 94   SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
            SY  +AG    A  L+   + E  +    +++ +I +Y TAG       +++ M   G  
Sbjct: 859  SYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCS 918

Query: 154  PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
            P+ +TY  L+    ++ +  + +     M + G+ P+   +  LL A+ +A + E+   V
Sbjct: 919  PDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERV 978

Query: 214  YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            Y  +   G+   V  Y T+L    D G  ++    FE ++  E+ +PD +  SS +    
Sbjct: 979  YHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQIR--ESVEPDRFIMSSAVHFYK 1036

Query: 274  CRGKVSEAEAMFNEMLEAG--FEPNLFV 299
              GK  EAE + + M   G  F  NL V
Sbjct: 1037 LAGKELEAEGILDSMKSLGIPFLKNLEV 1064



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 7/228 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           + ++I  Y   G  +   ++YEE+   G++  +++ + ++  +    +  + + + +   
Sbjct: 712 YISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQEAENVIRRSF 771

Query: 184 DNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           ++GL  +   +NT+ + +   GR  +     S+Y  M   G+  S+  YNT++++     
Sbjct: 772 EDGLELDTVAYNTFINAMLGAGRLHFAN---SIYDRMVSLGVAPSIQTYNTMISVYGRGR 828

Query: 241 YTDEAFEIFEDMK-SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
             D+A E+F   + S      D  T++++I+     GK  EA  +F EM E G +P    
Sbjct: 829 KLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVS 888

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
              +I  Y  A    +       +   G +PD      L+   TQ+ K
Sbjct: 889 YNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFK 936



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 1/189 (0%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P++I Y  LL   G+  +    +  + EM + G  P+     ++L  Y R    +  LS
Sbjct: 189 QPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLS 248

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
            Y  ++E+G+  S+ ++N +L+         +  +++ +M   +   P+S+T++ +I+  
Sbjct: 249 FYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDLWREM-VDKGVVPNSFTYTVVISSL 307

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              G V E+   F EM   GF P     + LI    K    D+ ++    +    I P +
Sbjct: 308 VKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSN 367

Query: 333 RFCGCLLNV 341
             C  LL +
Sbjct: 368 YTCASLLTL 376



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 143/338 (42%), Gaps = 26/338 (7%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G VE +F  +   +N  +  +   +S LI L    GN D  + +YE+M+   + P+ 
Sbjct: 308 VKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSN 367

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T  +LL    +     +  +++ EM  N +  +   Y  L+R YG+    ED    ++E
Sbjct: 368 YTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKE 427

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            ++ G+  +   Y  +  +  + G  ++A  I E M+ S N     +++  ++     + 
Sbjct: 428 TEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMR-SRNIWFSRFSYIVLLQCYVMKE 486

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK---AQRTDDVVRALNRLPELGITPDDR 333
            ++ AEA F  + + G  P+      ++  Y K    ++  D +  + + P   +  D  
Sbjct: 487 DLASAEATFQALSKTGL-PDAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDP---VEFDME 542

Query: 334 FCGCLLNV-----MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 388
            C  ++ V     M +  K+ + ++       +S+    + L++ E+    D+  +  E 
Sbjct: 543 LCKTVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQTLSLVMHEESERPDYVDDTVEA 602

Query: 389 FNSISKDVKKAYCNCLIDLCVNLNL---LENACKLLEL 423
            N           N  + L + L L   + NACK+ E+
Sbjct: 603 LNQ----------NNTLALELMLGLYSEVGNACKVEEI 630



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 111/256 (43%), Gaps = 12/256 (4%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIG 151
           S  ++ GN + A  LY+  R    RI P+ +  ++L+ LY   G++   ++++ EM+   
Sbjct: 340 SLSSKTGNRDEAIKLYEDMRYR--RIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNK 397

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           +  + + Y  L+   G+       +  +KE    GL  N  TY ++ + +  +   E  L
Sbjct: 398 IVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKAL 457

Query: 212 SVYREMKEKGMQLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           ++   M+ + +  S   Y  LL    M  D+   +  F+       S+   PD+ + + M
Sbjct: 458 TIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQAL-----SKTGLPDAGSCNDM 512

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           + +      + +A+    ++ +   E ++ +  ++++ Y K     D  + +  +   G+
Sbjct: 513 LNLYIKLDLLEKAKDFIFQIRKDPVEFDMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGL 572

Query: 329 TPDDRFCGCLLNVMTQ 344
             D  F   L  VM +
Sbjct: 573 FKDSEFIQTLSLVMHE 588



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%)

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A + F  MK   + QP    ++ ++ +    GK+  AE  F EMLEAG EP+     ++
Sbjct: 174 QARDFFGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTM 233

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           +  Y +  R   ++   + + E GI P
Sbjct: 234 LCTYARWGRHKAMLSFYSAVQERGIIP 260


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 106/236 (44%), Gaps = 6/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG +E A   +   R    R  PN   +S LI     A      + + E MKA G  P+
Sbjct: 91  RAGKIETALEFF---RKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 147

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +ITY  L+D + +  +      + +EM D G  PN  TY SLL    RAR   D L++ R
Sbjct: 148 VITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMR 207

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M  +G   +V  Y TL+     VG   +A  +  DM       PD   ++ +I      
Sbjct: 208 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG-TPDLMIYNMLINGLCKA 266

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +V E+ A+    +  G +P++   +S+I    ++ R D+  R L  +   G  PD
Sbjct: 267 DQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPD 322



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 9/284 (3%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           ++E MK++   P+M+TYN LLD + R  +  +   +++EM D   S +  ++  L+    
Sbjct: 32  LFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRR-SHDVISFNILVTGLC 90

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           RA   E  L  +R+M ++    +V  Y+ L+          +A E+ E MK +  C PD 
Sbjct: 91  RAGKIETALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAVELLESMK-ARGCSPDV 148

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++ ++       KV+ A  +  EML+AG  PNL    SL+    +A+R  D +  +  
Sbjct: 149 ITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRD 208

Query: 323 LPELGITPDDRFCGCLLNVMTQT--PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 380
           +   G TP+    G L++ + +    K+    L + ++K  +    +  +L+        
Sbjct: 209 MTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQ 268

Query: 381 FKKEATELFNSISKDVKK---AYCNCLIDLCVNLNLLENACKLL 421
             +    L  ++S  +K     Y + +  LC + N L+ AC+LL
Sbjct: 269 VDESIALLRRAVSGGIKPDVVTYSSVIYGLCRS-NRLDEACRLL 311



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 114/232 (49%), Gaps = 3/232 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+ +  L  RA +   + D   +S++I     +   D    +   +K+ G  P++I
Sbjct: 265 KADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVI 324

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+ L+D + +A +  +   +Y+ MT +G   +  TY++L+    +A   ++   +   M
Sbjct: 325 LYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 384

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRG 276
              G   S   YN+L+    D+ + DEA E+ E+M+ S NC P + T++ +I  +C    
Sbjct: 385 VRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS-NCAPSAVTYNILIHGMCRMER 443

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR-ALNRLPELG 327
             S A   F EM++ G  P+    + L++   K++   ++    L+++ +LG
Sbjct: 444 VDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLG 495



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 3/212 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   + TLI      G       +  +M   G  P+++ YN L++ + +A +  +   +
Sbjct: 216 PNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIAL 275

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +     G+ P+  TY+S++    R+   ++   +   +K +G    V LY+TL+     
Sbjct: 276 LRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 335

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEAF+++E M + + C  D  T+S++I      G+V EA  +   M+  G  P+  
Sbjct: 336 AGKVDEAFDLYEVM-TGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTM 394

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              SLI+        D+ +  +  +      P
Sbjct: 395 TYNSLIKGLCDLNHLDEAIELVEEMERSNCAP 426


>gi|302799860|ref|XP_002981688.1| hypothetical protein SELMODRAFT_115229 [Selaginella moellendorffii]
 gi|300150520|gb|EFJ17170.1| hypothetical protein SELMODRAFT_115229 [Selaginella moellendorffii]
          Length = 289

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 120/240 (50%), Gaps = 6/240 (2%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + +DP     +I + G A +FD  + V+     I VK +   YN LL    +A +   V 
Sbjct: 7   FHLDPYLRIHIIDVLGKASSFDIAVQVFNHFIKISVKKDAGMYNALLHAFCKAGKLEAVD 66

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAM 235
            ++++M  + + PN  +Y  L+ +Y +A +     +SV++EM  +G++ SV  YN L+A 
Sbjct: 67  DLFRDMKQS-IRPNHLSYNILMHSYVKAGHELTKVVSVFKEMYLRGVKASVASYNILIAA 125

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA---MFNEMLEAG 292
           CA      EA   F +MK  ++ +P+  T+SS+I +    G V    A   +  EM++A 
Sbjct: 126 CATGKQAWEARVFFSNMK-KQDLEPNVITYSSLINVYVASGDVGNCAAALDVLREMVKAE 184

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
             PN+   + L+  YG+  + ++ ++    + +LGI P       L+ + +++    L +
Sbjct: 185 VMPNVTTFSCLLHGYGQEGKIEEAMKIFQTMKDLGIEPSAITFNILMTMYSKSGHHALAQ 244



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 10/216 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGN-FDGCLNVYEEMKAIGVKP 154
           +AG +E    + D  R+ K  I PN  +++ L+  Y  AG+     ++V++EM   GVK 
Sbjct: 58  KAGKLE---AVDDLFRDMKQSIRPNHLSYNILMHSYVKAGHELTKVVSVFKEMYLRGVKA 114

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTL 211
           ++ +YN L+      K+ W+ +  +  M    L PN  TY+SL+  Y   G        L
Sbjct: 115 SVASYNILIAACATGKQAWEARVFFSNMKKQDLEPNVITYSSLINVYVASGDVGNCAAAL 174

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            V REM +  +  +VT ++ LL      G  +EA +IF+ MK     +P + TF+ ++T+
Sbjct: 175 DVLREMVKAEVMPNVTTFSCLLHGYGQEGKIEEAMKIFQTMKDL-GIEPSAITFNILMTM 233

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
            S  G  + A++ F+EM+E+G EP      SL+ C+
Sbjct: 234 YSKSGHHALAQSCFHEMIESGLEPTYVSFLSLMYCF 269



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 115 EKWRIDPNA--FSTLIKLY---GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           +K  ++PN   +S+LI +Y   G  GN    L+V  EM    V PN+ T++ LL   G+ 
Sbjct: 143 KKQDLEPNVITYSSLINVYVASGDVGNCAAALDVLREMVKAEVMPNVTTFSCLLHGYGQE 202

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
            +  +   I++ M D G+ P+  T+  L+  Y ++ +     S + EM E G++ +   +
Sbjct: 203 GKIEEAMKIFQTMKDLGIEPSAITFNILMTMYSKSGHHALAQSCFHEMIESGLEPTYVSF 262

Query: 230 NTLLAMCADVGYTDEA 245
            +L+     VG   E 
Sbjct: 263 LSLMYCFKSVGAYKEV 278


>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 110/212 (51%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D +A+ ++++    AG     L++  ++    +  + + YN +L  +G+ K+   +  +Y
Sbjct: 401 DRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLY 460

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M  +G SP+  +Y  L+ ++GRA   E+ + ++ E++    +  +  +N+L+      
Sbjct: 461 EKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKN 520

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  DEA   F++M+  E   PD  T+S++I       KV  A  +F+EML  G  PN+  
Sbjct: 521 GDIDEAHMRFKEMR-EEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVT 579

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              L+ C  ++ RT + V    +L + G+TPD
Sbjct: 580 YNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 611



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 16/258 (6%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             +VE  F L      +KW +  N ++   L++ +  + N +    VY E++  G K ++
Sbjct: 206 GADVERCFDLV-----KKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDI 260

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN LLD + +  +  QV  ++K+M      P+  TY  ++R  G+    +++L++++E
Sbjct: 261 FAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQE 320

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCR 275
           M EKG   ++  YNT++   A+    D+   +F  M     N   +   ++ ++   S  
Sbjct: 321 MTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVVEVSNKFMNKSIYAYLVRTLSKL 380

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G  SEA  +F  M     E +     S+++    A +T + +  L+++ E  I+ D    
Sbjct: 381 GHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTD---- 436

Query: 336 GCLLNVMTQTPKEELGKL 353
                VM  T    LGKL
Sbjct: 437 ----TVMYNTVLSALGKL 450



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 130/271 (47%), Gaps = 8/271 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+ N   AF +Y   R   +++D  A++ L+         D    V+++MK    +P+  
Sbjct: 237 RSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEY 296

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++   G+  +  +  T+++EMT+ G +PN   Y ++++A    R  + T+ ++ +M
Sbjct: 297 TYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKM 356

Query: 218 ----KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
                 K M  S+  Y  L+   + +G+  EA  +F +M S  + + D   + SM+    
Sbjct: 357 VVEVSNKFMNKSI--YAYLVRTLSKLGHASEAHRLFCNMWSFHD-EGDRDAYMSMLESLC 413

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             GK +EA  + +++ E     +  +  +++   GK ++T D+     ++ + G +PD  
Sbjct: 414 DAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIF 473

Query: 334 FCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
               L++   +  + EE  K+ E +E S+ K
Sbjct: 474 SYNILISSFGRAGRVEEAVKIFEELENSSCK 504



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 99/198 (50%), Gaps = 1/198 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG    A  L  +   ++   D   ++T++   G         ++YE+MK  G  P++ +
Sbjct: 415 AGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFS 474

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+ + GRA R  +   I++E+ ++   P+  ++ SL+   G+    ++    ++EM+
Sbjct: 475 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 534

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E+G+   V  Y+TL+         + A  +F++M  +E C P+  T++ ++      G+ 
Sbjct: 535 EEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEM-LAEGCSPNIVTYNILLDCLERSGRT 593

Query: 279 SEAEAMFNEMLEAGFEPN 296
           +EA  ++ ++ + G  P+
Sbjct: 594 AEAVDLYAKLKQQGLTPD 611



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 69/135 (51%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG VE A  +++   N   + D  +F++LI   G  G+ D     ++EM+  G+ P+++
Sbjct: 484 RAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVV 543

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G+  +      ++ EM   G SPN  TY  LL    R+    + + +Y ++
Sbjct: 544 TYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 603

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y  L
Sbjct: 604 KQQGLTPDSITYAVL 618



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+++ A   +   R E    D   +STLI+ +G     +    +++EM A G  PN++TY
Sbjct: 521 GDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTY 580

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           N LLD + R+ R  +   +Y ++   GL+P+  TYA L R
Sbjct: 581 NILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLER 620



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +  + LI ++G   + + C ++   +K   ++ N  TY  LL    R+    +   +Y E
Sbjct: 194 STINILIGIFGGGADVERCFDL---VKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVE 250

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +   G   +   Y  LL A  +    +    V+++MK K  +     Y  ++ M   +G 
Sbjct: 251 LRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGK 310

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
            DE+  +F++M + +   P+   +++MI   +    V +   +F++M+
Sbjct: 311 ADESLTLFQEM-TEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMV 357


>gi|356547448|ref|XP_003542124.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 3/209 (1%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           G +  C   +EEM   GV  ++ +Y+  +D + +  +PW+   ++KE+   G   +   Y
Sbjct: 193 GWWSKCNEFWEEMDKKGVHKDLHSYSIYMDILCKGGKPWKAVKLFKEIKKKGFKLDVVVY 252

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
             ++RA G +   + ++ V+REMKE G++ +V  YNTL+ +  D     EA  +   +  
Sbjct: 253 NIVIRAIGLSHGVDFSIRVFREMKELGIKPTVVTYNTLIRLLCDCYRHKEALALLRTIMP 312

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           S+ C P + ++       +   K  +  AMF+EM+E+G  P +     L+  +G+     
Sbjct: 313 SDGCHPTAVSYHCFF---ASMEKPKQILAMFDEMVESGVRPTMDTYVMLLNKFGRWGFLR 369

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMT 343
            V    N++ +LG +PD      L++ + 
Sbjct: 370 PVFMVWNKMKQLGCSPDAAAYNALIDALV 398



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 5/199 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A  L+   + + +++D   ++ +I+  G +   D  + V+ EMK +G+KP ++
Sbjct: 226 KGGKPWKAVKLFKEIKKKGFKLDVVVYNIVIRAIGLSHGVDFSIRVFREMKELGIKPTVV 285

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKE-MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN L+  +    R  +   + +  M  +G  P   +Y     +  + +     L+++ E
Sbjct: 286 TYNTLIRLLCDCYRHKEALALLRTIMPSDGCHPTAVSYHCFFASMEKPK---QILAMFDE 342

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G++ ++  Y  LL      G+    F ++  MK    C PD+  ++++I     + 
Sbjct: 343 MVESGVRPTMDTYVMLLNKFGRWGFLRPVFMVWNKMKQL-GCSPDAAAYNALIDALVDKA 401

Query: 277 KVSEAEAMFNEMLEAGFEP 295
            +  A     EML  G  P
Sbjct: 402 LIDMARKYDEEMLAKGLSP 420


>gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Cucumis sativus]
          Length = 608

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 124/264 (46%), Gaps = 2/264 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V++A  LY+ A+ +K   DP  F  LI +Y   G+ +  L + E MK   +  +   +  
Sbjct: 311 VKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKALEIVEVMKDFKIGVSDCIFCA 370

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +++     +       +Y+++ ++G  P   TYAS + AY R         ++ EM+EKG
Sbjct: 371 IVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKG 430

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
               V  Y++L++M    G   +A  +   MK  + CQP+ W ++ ++ +      + + 
Sbjct: 431 FDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKE-KGCQPNVWIYNILMEMHGKAKNLKQV 489

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           E ++ EM      P+    TS+I  Y KA   +   +        G T D  F G ++ V
Sbjct: 490 EKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGV 549

Query: 342 MTQTPK-EELGKLVECVEKSNSKL 364
            ++T + +EL KL+  ++   ++L
Sbjct: 550 FSKTSRVDELVKLLRDMKLEGTRL 573



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 114/246 (46%), Gaps = 1/246 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G++E A  + +  ++ K  +    F  ++  Y T   ++  + VYE++   G +P  
Sbjct: 341 VQQGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQ 400

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY + ++   R     + + I+ EM + G       Y+SL+  YG+    +D + +  +
Sbjct: 401 VTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAK 460

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MKEKG Q +V +YN L+ M        +  +++++MK  +   PD  +++S+I+      
Sbjct: 461 MKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMK-RKKIAPDKVSYTSIISAYVKAS 519

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  + E  + E    G   +      ++  + K  R D++V+ L  +   G   D+R   
Sbjct: 520 EFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYR 579

Query: 337 CLLNVM 342
             LN +
Sbjct: 580 TALNAL 585



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 72/281 (25%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           AF   ++ Y         + V++ +K+  ++ +   Y  +++   +     +V  ++ E+
Sbjct: 189 AFEAAMRGYNKLHMHKSTIMVFQRLKSARIEADSGCYCRVMEAYLKLGDSERVMELFNEV 248

Query: 183 TDN-GLSPNWNT--YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
                +S  ++T  Y  L  +  ++    ++L  +R+M++KG+    T+Y+ L+   A +
Sbjct: 249 ESRISVSTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKGIAEDYTIYSALICTFASI 308

Query: 240 -----------------------------------GYTDEAFEIFEDMKS---------- 254
                                              G  ++A EI E MK           
Sbjct: 309 QEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKALEIVEVMKDFKIGVSDCIF 368

Query: 255 ------------------------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
                                    + C+P   T++S I      G  S+AE +F EM E
Sbjct: 369 CAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEE 428

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            GF+  +   +SLI  YGK  R  D +R L ++ E G  P+
Sbjct: 429 KGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPN 469



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 2/127 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ L++++G A N      +++EMK   + P+ ++Y +++    +A    + +  
Sbjct: 468 PNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQY 527

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y+E   NG + +      ++  + +    ++ + + R+MK +G +L   LY T L    D
Sbjct: 528 YREFRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYRTALNALMD 587

Query: 239 VGYTDEA 245
            G   +A
Sbjct: 588 AGLQVQA 594


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG +  A  L          ID + ++ ++            + + E++ A G  P +
Sbjct: 235 VKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTI 294

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN LL+ + +  R  +   + +++ DNG +P+  TY SL+   G+ +   +   +++E
Sbjct: 295 ATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 354

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G+ L    Y  L+      G   +A  +++ M +S  C PD  T S+MI   S  G
Sbjct: 355 MASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTM-TSHGCVPDVVTLSTMIDGLSKAG 413

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++  A  +F  M   G  PN  V ++LI    KA++ D  +  L ++ +   TPD
Sbjct: 414 RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 468



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 7/231 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  +Y    +     D    ST+I     AG     + +++ M+A G+ PN +
Sbjct: 376 QTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV 435

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+ L+  + +A++      +  +M     +P+  TY  L+    ++   E   + + EM
Sbjct: 436 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 495

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G +  V  YN L++     G TD A  + +DM SS       + +SS++      GK
Sbjct: 496 LEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSR------FVYSSLVDGLCKSGK 549

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +     +F+EM  +G   N    T LI    KA R D+ V   N + + G+
Sbjct: 550 LEGGCMLFHEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM 599



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 115/250 (46%), Gaps = 2/250 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G V  A   ++  R     +    FS LI     AG      ++ +E    G   ++ 
Sbjct: 202 KSGKVLAAMDHFEAVR-RSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIH 260

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  +++ + + K+  +   + +++T NG +P   TY +LL    +    E+ + + R++
Sbjct: 261 TYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 320

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G    V  Y +L+        + EA+++F++M +S     D+  ++++I      GK
Sbjct: 321 VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM-ASRGLALDTVCYTALIRGLLQTGK 379

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +A +++  M   G  P++  L+++I    KA R    VR    +   G+ P++     
Sbjct: 380 IPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSA 439

Query: 338 LLNVMTQTPK 347
           L++ + +  K
Sbjct: 440 LIHGLCKARK 449



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 88/181 (48%), Gaps = 5/181 (2%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           +P++ T+N L+     A+ P +   + +EM  D G++P+  T+  +L  +G  + G+   
Sbjct: 151 RPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVL--HGLCKSGKVLA 208

Query: 212 SV-YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           ++ + E   + M +S   ++ L+      G   +A  + ++  ++  C  D  T+++++ 
Sbjct: 209 AMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQE-TTTNGCTIDIHTYTAIVN 267

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             +   K+ EA A+  ++   G  P +    +L+    K  R ++ +  L ++ + G TP
Sbjct: 268 WLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTP 327

Query: 331 D 331
           D
Sbjct: 328 D 328



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+ A  L++  R E     P A++++I     +G  +    VY+EM     KP+ +
Sbjct: 580 KANRVDEAVSLFNAIRKEGMP-HPYAYNSIISALIKSGKVNEGQAVYQEMTRWW-KPDRV 637

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 189
           TYN LL+ M  A R  +    Y EMT  G  P
Sbjct: 638 TYNALLNGMIGANRMDRAHYYYLEMTGRGYVP 669


>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
          Length = 790

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 121/244 (49%), Gaps = 8/244 (3%)

Query: 88  SKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 147
           SKL   S   R  +++  +  +D         D +A+ ++++    AG     L++  ++
Sbjct: 440 SKLGHASEAHRLLHLQYDWSFHDEG-------DRDAYMSMLESLCDAGKTTEALDLLSKI 492

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
               +  + + YN +L  +G+ K+   +  +Y++M  +G SP+  +Y  L+ ++GRA   
Sbjct: 493 HEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRV 552

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           E+ + ++ E++    +  +  +N+L+      G  DEA   F++M+  E   PD  T+S+
Sbjct: 553 EEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR-EEGLSPDVVTYST 611

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I       KV  A  +F+EML  G  PN+     L+ C  ++ RT + V    +L + G
Sbjct: 612 LIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQG 671

Query: 328 ITPD 331
           +TPD
Sbjct: 672 LTPD 675



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 43/266 (16%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           + ++M+  GV+ ++ T N L+   G       V+  +  +    L  N  TY  LL+A+ 
Sbjct: 180 ILDDMERCGVRGSISTINILIGIFGGGA---DVERCFDLVKKWDLQMNCYTYKCLLQAHL 236

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT------------------- 242
           R+        VY E++ +G +L +  YN LL A+  D   T                   
Sbjct: 237 RSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKLTWNLLLVCLQIAELLDCLTV 296

Query: 243 ------------DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
                       D+ + +F+DMK  ++C+PD +T++ MI +    GK  E+  +F EM E
Sbjct: 297 ALDNDKIISVEVDQVYMVFKDMKR-KHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTE 355

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 350
            G+ PNL    ++IQ     +  D  +   +++ E    P+      +LNV+    + +L
Sbjct: 356 KGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVL--VAEGQL 413

Query: 351 GKLVECVEKSN-----SKLGYVVKLL 371
           G+L E VE SN     S   Y+V+ L
Sbjct: 414 GRLDEVVEVSNKFMNKSIYAYLVRTL 439



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 40/218 (18%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             +VE  F L      +KW +  N ++   L++ +  + N +    VY E++  G K ++
Sbjct: 206 GADVERCFDLV-----KKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDI 260

Query: 157 ITYNNLLDTMGRA-KRPW-------------------------------QVKTIYKEMTD 184
             YN LLD + +  K  W                               QV  ++K+M  
Sbjct: 261 FAYNMLLDALAKDNKLTWNLLLVCLQIAELLDCLTVALDNDKIISVEVDQVYMVFKDMKR 320

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
               P+  TY  ++R  G+    +++L++++EM EKG   ++  YNT++   A+    D+
Sbjct: 321 KHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDK 380

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
              +F  M  + NC+P+ +TFS ++ +    G++   +
Sbjct: 381 TIFLFSKMVEN-NCRPNGFTFSVILNVLVAEGQLGRLD 417



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 132/330 (40%), Gaps = 75/330 (22%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + +  L+     + +  +  A++T+I+        D  + ++ +M     +PN  
Sbjct: 339 KIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGF 398

Query: 158 TYNNLLDT------MGRAKRPWQV------KTIYKEMTDN--------------GLSPNW 191
           T++ +L+       +GR     +V      K+IY  +                  L  +W
Sbjct: 399 TFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLLHLQYDW 458

Query: 192 --------NTYASLLRAYGRA----------------RYGEDTL---------------- 211
                   + Y S+L +   A                R   DT+                
Sbjct: 459 SFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTS 518

Query: 212 ---SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
               +Y +MK+ G    +  YN L++     G  +EA +IFE++++S +C+PD  +F+S+
Sbjct: 519 DLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENS-SCKPDIISFNSL 577

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I      G + EA   F EM E G  P++   ++LI+C+GK  + +   R  + +   G 
Sbjct: 578 INCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGC 637

Query: 329 TPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           +P+      LL+ +     E  G+  E V+
Sbjct: 638 SPNIVTYNILLDCL-----ERSGRTAEAVD 662



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 69/135 (51%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG VE A  +++   N   + D  +F++LI   G  G+ D     ++EM+  G+ P+++
Sbjct: 548 RAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVV 607

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G+  +      ++ EM   G SPN  TY  LL    R+    + + +Y ++
Sbjct: 608 TYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 667

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y  L
Sbjct: 668 KQQGLTPDSITYAVL 682



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 119/265 (44%), Gaps = 7/265 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V+  + ++   + +    D   ++ +I++ G  G  D  L +++EM   G  PN+I YN 
Sbjct: 308 VDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNT 367

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDTLSVYREMKEK 220
           ++  +   +   +   ++ +M +N   PN  T++ +L       + G   L    E+  K
Sbjct: 368 MIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGR--LDEVVEVSNK 425

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFE-DMKSSENCQPDSWTFSSMITICSCRGKVS 279
            M  S+  Y  L+   + +G+  EA  +       S + + D   + SM+      GK +
Sbjct: 426 FMNKSI--YAYLVRTLSKLGHASEAHRLLHLQYDWSFHDEGDRDAYMSMLESLCDAGKTT 483

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA  + +++ E     +  +  +++   GK ++T D+     ++ + G +PD      L+
Sbjct: 484 EALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILI 543

Query: 340 NVMTQTPK-EELGKLVECVEKSNSK 363
           +   +  + EE  K+ E +E S+ K
Sbjct: 544 SSFGRAGRVEEAVKIFEELENSSCK 568



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ A   +   R E    D   +STLI+ +G     +    +++EM A G  PN++
Sbjct: 583 KNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIV 642

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           TYN LLD + R+ R  +   +Y ++   GL+P+  TYA L R
Sbjct: 643 TYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLER 684


>gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Cucumis sativus]
          Length = 608

 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 124/264 (46%), Gaps = 2/264 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V++A  LY+ A+ +K   DP  F  LI +Y   G+ +  L + E MK   +  +   +  
Sbjct: 311 VKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKALEIVEVMKDFKIGVSDCIFCA 370

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +++     +       +Y+++ ++G  P   TYAS + AY R         ++ EM+EKG
Sbjct: 371 IVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKG 430

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
               V  Y++L++M    G   +A  +   MK  + CQP+ W ++ ++ +      + + 
Sbjct: 431 FDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKE-KGCQPNVWIYNILMEMHGKAKNLKQV 489

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           E ++ EM      P+    TS+I  Y KA   +   +        G T D  F G ++ V
Sbjct: 490 EKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGV 549

Query: 342 MTQTPK-EELGKLVECVEKSNSKL 364
            ++T + +EL KL+  ++   ++L
Sbjct: 550 FSKTSRVDELVKLLRDMKLEGTRL 573



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 114/246 (46%), Gaps = 1/246 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G++E A  + +  ++ K  +    F  ++  Y T   ++  + VYE++   G +P  
Sbjct: 341 VQQGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQ 400

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY + ++   R     + + I+ EM + G       Y+SL+  YG+    +D + +  +
Sbjct: 401 VTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAK 460

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MKEKG Q +V +YN L+ M        +  +++++MK  +   PD  +++S+I+      
Sbjct: 461 MKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMK-RKKIAPDKVSYTSIISAYVKAS 519

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +  + E  + E    G   +      ++  + K  R D++V+ L  +   G   D+R   
Sbjct: 520 EFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYR 579

Query: 337 CLLNVM 342
             LN +
Sbjct: 580 TALNAL 585



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 2/127 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ L++++G A N      +++EMK   + P+ ++Y +++    +A    + +  
Sbjct: 468 PNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQY 527

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y+E   NG + +      ++  + +    ++ + + R+MK +G +L   LY T L    D
Sbjct: 528 YREFRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYRTALNALMD 587

Query: 239 VGYTDEA 245
            G   +A
Sbjct: 588 AGLQVQA 594


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 118/260 (45%), Gaps = 2/260 (0%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           + Y T+   VEM  GL D         D   FS LI  Y   G  D  + V+ +M+  G+
Sbjct: 344 QGYATKGALVEM-HGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGL 402

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            PN +TY  ++  + ++ R       +++M D GLSP    Y SL+         E    
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 462

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +  EM ++G+ L+   +N+++      G   E+ ++FE M      +P+  T++++I   
Sbjct: 463 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRI-GVKPNVITYNTLINGY 521

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              GK+ EA  + + M+  G +PN    ++LI  Y K  R +D +     +   G++PD 
Sbjct: 522 CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDI 581

Query: 333 RFCGCLLNVMTQTPKEELGK 352
                +L  + QT +    K
Sbjct: 582 ITYNIILQGLFQTRRTAAAK 601



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 116/230 (50%), Gaps = 1/230 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D   + Y EM   G+ P+++TYN+++  + +A+   +   + 
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ P+  TY S+L  Y  +   ++ +   ++M+  G++  V  Y+ L+      
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA +IF+ M +    +P+  T+ +++   + +G + E   + + M+  G  P+ +V
Sbjct: 315 GRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            + LI  Y    + D  +   +++ + G+ P+    G ++ ++ ++ + E
Sbjct: 374 FSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A+  Y    +     D   ++++I     A   D  + V   M   GV P+ +
Sbjct: 208 KEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 267

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN++L     + +P +     K+M  +G+ P+  TY+ L+    +     +   ++  M
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++  +T Y TLL   A  G   E   +  D+       PD + FS +I   + +GK
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPDHYVFSILICAYANQGK 386

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           V +A  +F++M + G  PN     ++I    K+ R +D +    ++ + G++P
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 3/180 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++TLI  Y  AG  D  + +   M ++G+KPN +TY+ L++   +  R     
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++KEM  +G+SP+  TY  +L+   + R       +Y  + E G Q+ ++ YN +L   
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                TD+A ++F+++    + + ++ TF+ MI      G+  EA+ +F      G  PN
Sbjct: 627 CKNKLTDDALQMFQNL-CLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 5/246 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           RAG +++ F        + +R+D  AF+ L+K L       D    V   M  +G  PN+
Sbjct: 99  RAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNV 158

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRARYGEDTLSV 213
            +YN LL  +    R  +   +   M D+   G  P+  +Y +++  + +    +   S 
Sbjct: 159 FSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 218

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y EM ++G+   V  YN+++A        D+A E+   M  +    PD  T++S++    
Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYC 277

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G+  EA     +M   G EP++   + L+    K  R  +  +  + + + G+ P+  
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337

Query: 334 FCGCLL 339
             G LL
Sbjct: 338 TYGTLL 343



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 115/255 (45%), Gaps = 1/255 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + +   + TL++ Y T G       + + M   G+ P
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 369

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +   ++ L+       +  Q   ++ +M   GL+PN  TY +++    ++   ED +  +
Sbjct: 370 DHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 429

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++G+     +YN+L+         + A E+  +M     C  ++  F+S+I     
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL-NTIFFNSIIDSHCK 488

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+V E+E +F  M+  G +PN+    +LI  Y  A + D+ ++ L+ +  +G+ P+   
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548

Query: 335 CGCLLNVMTQTPKEE 349
              L+N   +  + E
Sbjct: 549 YSTLINGYCKISRME 563



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 117/261 (44%), Gaps = 9/261 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+++I  +   G       ++E M  IGVKPN+ITYN L++    A +  +   +   M 
Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL PN  TY++L+  Y +    ED L +++EM+  G+   +  YN +L        T 
Sbjct: 539 SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-EAEAMFNEMLEAGFEPNLFVLTS 302
            A E++  ++ +E+      +  ++I    C+ K++ +A  MF  +     +        
Sbjct: 599 AAKELY--VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNI 656

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVECVEKS- 360
           +I    K  R D+           G+ P+   +     N++ Q   EEL +L   +E + 
Sbjct: 657 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716

Query: 361 ----NSKLGYVVKLLLEEQDI 377
               +  L ++V+ LL+  +I
Sbjct: 717 CTVDSGMLNFIVRELLQRGEI 737



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 8/129 (6%)

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI--FEDMK--SSENCQPDSW 263
           ED   V+ E+  +G   S+   N  LA   DV     A  +  +  M    ++   PD  
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALA---DVARDSPAAAVSRYNRMARAGADEVTPDLC 88

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR-ALNR 322
           T+  +I  C   G++    A    +++ GF  +    T L++     +RT D +   L R
Sbjct: 89  TYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 148

Query: 323 LPELGITPD 331
           + ELG  P+
Sbjct: 149 MTELGCIPN 157


>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 426

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                VG    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERVGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSXVIALVLN 398



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 127/280 (45%), Gaps = 4/280 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ RA     R +   +STLI         D  L +  +M  +G + N +TY+ ++D
Sbjct: 527 AHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVD 586

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +  R      + ++M D G  P+  TY +L+  + + +   + + + REM E G   
Sbjct: 587 GLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHP 646

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           SV  Y TL       G  DEA EI + M ++  C P++ T+SS++      G+V+EA   
Sbjct: 647 SVVTYTTLCHGLCRSGRFDEAVEILDYM-AARGCAPNAITYSSIVDGLCKAGRVTEALGY 705

Query: 285 FNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           F +M  +    P++   ++LI    KA R D+    L R+   G  PD      L+N + 
Sbjct: 706 FEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLC 765

Query: 344 QTPKEELGKLVEC--VEKSNSKLGYVVKLLLEEQDIEGDF 381
              + + G  + C   E+      Y    ++    ++G+F
Sbjct: 766 DAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEF 805



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 107/208 (51%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TL+     +G     L + E M   G+ P++IT+N++LD + + +R      ++K   
Sbjct: 476 YNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRAL 535

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G  PN  TY++L+    +    ++ L +  +M E G + +   Y+T++     VG  +
Sbjct: 536 ERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRME 595

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  +   M+ +  C PD+ T++++I     R ++ EA  +  EMLEAGF P++   T+L
Sbjct: 596 DAVVVLRQMRDA-GCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTL 654

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
                ++ R D+ V  L+ +   G  P+
Sbjct: 655 CHGLCRSGRFDEAVEILDYMAARGCAPN 682



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 117/288 (40%), Gaps = 15/288 (5%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R +   +ST++      G  +  + V  +M+  G  P+ +TYN L+D   + +R  +   
Sbjct: 575 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVG 634

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + +EM + G  P+  TY +L     R+   ++ + +   M  +G   +   Y++++    
Sbjct: 635 LLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLC 694

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G   EA   FE M   E   P    +S++I      G++ EA      M+ AG  P++
Sbjct: 695 KAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDV 754

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--------EE 349
              + LI     A R D  +     + E G   D      ++N      +        EE
Sbjct: 755 VTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEE 814

Query: 350 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK 397
           +      + K+    G V+K L     I+     EA   F+SI +D +
Sbjct: 815 MK--THGIAKNTVTHGIVIKALCGNDRID-----EAVSYFHSIPEDCR 855



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 9/238 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG V  AF  + +A    +R     +ST+I         D    + EEM   G  PN +
Sbjct: 13  KAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAV 72

Query: 158 TYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           TYN L++ +   GRAK  +   ++ + M  NG  P   T+  +++   +    E    V 
Sbjct: 73  TYNTLVNALLGQGRAKEAF---SLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVV 129

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM ++G    V ++  LL    ++G  DEA+  F+ +       PD+ T+++M+     
Sbjct: 130 DEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLI-GFTPDAVTYNTMVDGLYK 188

Query: 275 RGKVSEAEAMFNEMLEAGF-EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G++ EA  M  ++L   F  P +F  T  +    KA          + +P+ G++P+
Sbjct: 189 AGRL-EAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPN 245



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 1/176 (0%)

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           M+TYN L++ + +A R     T +++    G  P   TY++++    R    +    +  
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM  +G   +   YNTL+      G   EAF + E M ++  C P+  TF  +I      
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERM-AANGCPPELITFGLIIKGLCKE 119

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G++  A  + +EM++ GF P++ + T L+    +  R D+      ++  +G TPD
Sbjct: 120 GEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPD 175



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 34/245 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPN 155
           +AG +E A G+  +   E +   P  F+  I + G   AGN  G    ++ M   GV PN
Sbjct: 188 KAGRLEAA-GMVLQLLAESFS-SPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPN 245

Query: 156 MITYNNLLDTMGRA-KRPWQVKTIYKEMTDNGL--------------------------- 187
            +TY+ L+D + +A K    +  +  + +  G+                           
Sbjct: 246 TVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMP 305

Query: 188 -SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
             PN   + SL+    +AR  ++   ++  MKE G    V  YN LL     +    EA+
Sbjct: 306 CVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAY 365

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQ 305
              E M+ +E C P+  TFS++I      G+V++A  ++  M+   G  PN F    L++
Sbjct: 366 RHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLE 425

Query: 306 CYGKA 310
              KA
Sbjct: 426 GLCKA 430



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 2/211 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  +  + R+     D   ++TLI  +         + +  EM   G  P+++
Sbjct: 590 KVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVV 649

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L   + R+ R  +   I   M   G +PN  TY+S++    +A    + L  + +M
Sbjct: 650 TYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 709

Query: 218 -KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            +++ +   V  Y+ L+      G  DEA+E  E M  +    PD  TFS +I      G
Sbjct: 710 ARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRI-PDVVTFSILINGLCDAG 768

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           ++     +F  M E G + +++   ++I  Y
Sbjct: 769 RIDTGLELFCGMAERGCKADIYAYNAMINAY 799



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 6/232 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG ++    L+        + D  A++ +I  Y   G F     + EEMK  G+  N +T
Sbjct: 767 AGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVT 826

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +  ++  +    R  +  + +  + ++    +  +Y +L+ +   +R  E  L + R M 
Sbjct: 827 HGIVIKALCGNDRIDEAVSYFHSIPED--CRDEISYNTLITSLVASRRSEQALELLRAMV 884

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G       Y T++      G  + A ++ ++M+S  +  PD  T++ MI+  S   ++
Sbjct: 885 ADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGH-SPDLRTYTIMISGLSKAKQL 943

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             A   F EML    +P+  V +SLI  + KA + DD   A   L   GI P
Sbjct: 944 PLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDD---AWKLLRSSGIEP 992



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 6/205 (2%)

Query: 120  DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
            D  +++TLI     +   +  L +   M A G  P+   Y  ++D + +A  P     + 
Sbjct: 856  DEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLL 915

Query: 180  KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +EM   G SP+  TY  ++    +A+        + EM  K ++    +Y++L+      
Sbjct: 916  QEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKA 975

Query: 240  GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               D+A+++      S   +P    +S+M+ ++C  RG   +A  +  EM     EP + 
Sbjct: 976  DKVDDAWKLLR----SSGIEPTITMYSTMVDSLCKNRG-TDKALEVIREMKSKNCEPGIH 1030

Query: 299  VLTSLIQCYGKAQRTDDVVRALNRL 323
            + TSL   Y    R D+ V+ +N L
Sbjct: 1031 IWTSLATAYVAEGRVDEAVKLVNDL 1055



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 116/272 (42%), Gaps = 22/272 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNM 156
           +A  V+ AF L+D  +      D   ++ L+K               E M+   G  PN+
Sbjct: 322 QARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNV 381

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +T++ L+  +  A R  Q   +Y+ M    G+SPN  TYA LL    +A         + 
Sbjct: 382 VTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFE 441

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M E+  + S +             +   + E+  D    + C+P   T+++++T  S  
Sbjct: 442 QMLEREWRSSSS-------------WPIHSPEV--DFLMVQVCRPTLVTYNTLVTGLSKS 486

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G V +A  +   M+E+G  P++    S++    K QR  D      R  E G  P+    
Sbjct: 487 GMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTY 546

Query: 336 GCLLNVMTQTPKEE-----LGKLVECVEKSNS 362
             L++ +++  K +     L K+VE   ++N+
Sbjct: 547 STLIDGLSKMAKMDEALQLLAKMVELGCRANT 578



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 3/156 (1%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            +AG+ E+A  L    R+     D   ++ +I     A       + +EEM    +KP+ I
Sbjct: 904  KAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAI 963

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             Y++L+D   +A +   V   +K +  +G+ P    Y++++ +  + R  +  L V REM
Sbjct: 964  VYSSLIDAFCKADK---VDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREM 1020

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
            K K  +  + ++ +L       G  DEA ++  D++
Sbjct: 1021 KSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 111/282 (39%), Gaps = 52/282 (18%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E AF + D   +  +  D    + L+      G  D     ++++  IG  P+ +
Sbjct: 118 KEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAV 177

Query: 158 TYNNLLDTMGRAKRPWQVKTI-----------------------------------YKEM 182
           TYN ++D + +A R      +                                   +  M
Sbjct: 178 TYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSM 237

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G+SPN  TY +L+    +A   +  L + R+   K  Q  +  +++LL         
Sbjct: 238 PQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRD---KNSQAGMFAFSSLLHGLCQAHRL 294

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
           +EA ++ + M     C P+   F+S++  +C  R +V EA  +F+ M E+G   ++    
Sbjct: 295 EEAIQLLKAMP----CVPNVVCFNSLMNGLCQAR-RVDEAFELFDVMKESGCSADVITYN 349

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            L++   K +R  +  R +  +         R  GC  NV+T
Sbjct: 350 ILLKGLCKLRRIPEAYRHVELM--------RRTEGCSPNVVT 383


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 8/241 (3%)

Query: 98  RAGNVEMAFGLYD-----RARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI 150
           R G +E A  L+      R+ +   R  PN   +S LI     A      + + E MKA 
Sbjct: 161 RTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKAR 220

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  P++ITY  L+D + +  +      + +EM D G  PN  TY SLL    RAR   D 
Sbjct: 221 GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDA 280

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           L++ R+M  +G   +V  Y TL+     VG   +A  +  DM       PD   ++ +I 
Sbjct: 281 LALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG-TPDLMIYNMLIN 339

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                 +V E+ A+    +  G +P++   +S+I    ++ R D+  R L  +   G  P
Sbjct: 340 GLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPP 399

Query: 331 D 331
           D
Sbjct: 400 D 400



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 137/297 (46%), Gaps = 14/297 (4%)

Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196
            D  L +  EM+  G +PN++TYN+L+D + +   P + + +++ M     SP+  TY +
Sbjct: 95  LDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNT 154

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQ-------LSVTLYNTLLAMCADVGYTDEAFEIF 249
           LL    R    E  +++++EM ++           +V  Y+ L+          +A E+ 
Sbjct: 155 LLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELL 214

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           E MK+   C PD  T++ ++       KV+ A  +  EML+AG  PNL    SL+    +
Sbjct: 215 ESMKA-RGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCR 273

Query: 310 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEELGKLVECVEKSNSKLGYV 367
           A+R  D +  +  +   G TP+    G L++ + +    K+    L + ++K  +    +
Sbjct: 274 ARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMI 333

Query: 368 VKLLLEEQDIEGDFKKEATELFNSISKDVKK---AYCNCLIDLCVNLNLLENACKLL 421
             +L+          +    L  ++S  +K     Y + +  LC + N L+ AC+LL
Sbjct: 334 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRS-NRLDEACRLL 389



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 8/219 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L++ +   G  D     ++EM++  + PN+   + L+D + +AKR       +
Sbjct: 8   DVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M  +G+  +   Y +LL    + +  +  L++  EM++ G + +V  YN+L+      
Sbjct: 68  RAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-------G 292
              D A E+FE MKS E C P   T+++++      GK+  A A+F EML+         
Sbjct: 128 NEPDRAQELFEHMKSVE-CSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDR 186

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             PN+   + LI    KA R    V  L  +   G +PD
Sbjct: 187 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 225



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 3/212 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   + TLI      G       +  +M   G  P+++ YN L++ + +A +  +   +
Sbjct: 294 PNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIAL 353

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +     G+ P+  TY+S++    R+   ++   +   +K +G    V LY+TL+     
Sbjct: 354 LRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 413

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEAF+++E M + + C  D  T+S++I      G+V EA  +   M+  G  P+  
Sbjct: 414 AGKVDEAFDLYEVM-AGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTM 472

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              SLI+        D+ +  +  +      P
Sbjct: 473 TYNSLIKGLCDLNHLDEAIELVEEMERSNCAP 504



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 126/275 (45%), Gaps = 10/275 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+ +  L  RA +   + D   +S++I     +   D    +   +K+ G  P++I
Sbjct: 343 KADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVI 402

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+ L+D + +A +  +   +Y+ M  +G   +  TY++L+    +A   ++   +   M
Sbjct: 403 LYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARM 462

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   S   YN+L+    D+ + DEA E+ E+M+ S NC P + T++ +I    CR +
Sbjct: 463 VRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS-NCAPSAVTYNILIH-GMCRME 520

Query: 278 VSEAEAMFNEMLEA------GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             ++  +  E  +A      G   +    +SLI    KA R  + +     + + G+ PD
Sbjct: 521 RVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPD 580

Query: 332 DRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY 366
                 LL  + ++  ++L +L   V     +LGY
Sbjct: 581 HITYSILLEGLKKS--KDLHELRHLVLDQMVQLGY 613



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%)

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           CQPD +T+++++      G++ +A+  F+EM      PN+F+ + LI    KA+R+ D +
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 318 RALNRLPELGITPD 331
           R    +   GI  D
Sbjct: 65  RCFRAMQGSGIVAD 78


>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 426

 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   N++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFNKMRGLGYFPDSNVIALVLN 398



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LS++ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  IF +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 426

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 127/249 (51%), Gaps = 16/249 (6%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAAAGRJEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
             ++ V   LI  + K ++  +VV   +++ E    PD      +LN          GKL
Sbjct: 352 VKDITVFERLIHLFSKYKKYXNVVEVFDKMRERRYFPDSNVIALVLNA--------YGKL 403

Query: 354 VECVEKSNS 362
            E  EK+NS
Sbjct: 404 HE-FEKANS 411



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y S++  +G+A+   +  S+  EM+  G+      Y TLL M  + 
Sbjct: 68  SRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KRFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 108/227 (47%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++++I ++G A  F    ++  EM+  GV P+ ++Y  LL 
Sbjct: 63  AISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLT 122

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                KR  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++ 
Sbjct: 123 MHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEP 182

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  +
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEID 288



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 1/159 (0%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
            LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    +A
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             IF  +K S    PD   ++SMI +        EA ++ NEM  AG  P+    T+L+ 
Sbjct: 64  ISIFSRLKRS-GFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLT 122

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            + + +R  + +     + E+    D   C  +++V  Q
Sbjct: 123 MHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 84/179 (46%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++G  G  D    ++++++  GV+ + + Y  ++    RA      K
Sbjct: 250 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAK 309

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L A GR    E+   V+R+  + G    +T++  L+ + 
Sbjct: 310 RLLHELKRPDNIPR-DTAIHILAAAGRJ---EEATWVFRQAIDAGEVKDITVFERLIHLF 365

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+F+ M+      PDS   + +  + +  GK+ E   A +++ EM + G
Sbjct: 366 SKYKKYXNVVEVFDKMRERRYF-PDS---NVIALVLNAYGKLHEFEKANSVYMEMQDEG 420



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 10/164 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +          ++ +  Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
               T I +   AG  +    V+ +    G   ++  +  L+    + K+   V  ++ +
Sbjct: 321 IPRDTAIHILAAAGRJEEATWVFRQAIDAGEVKDITVFERLIHLFSKYKKYXNVVEVFDK 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
           M +    P+ N  A +L AYG+    E   SVY EM+++G   S
Sbjct: 381 MRERRYFPDSNVIALVLNAYGKLHEFEKANSVYMEMQDEGCXFS 424


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   ++ A  L++   +         +   I  YG +G     +  +E+MK  G+ PN++
Sbjct: 414 RLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIV 473

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  L ++    R  + K  +  +   GL+P+  TY  L+R YG+A   +D + +  EM
Sbjct: 474 ACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEM 533

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G    V + N+L+         DEA+++F+ MK  +   P   T+++++      G+
Sbjct: 534 EENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMK-LAPTVVTYNTLLAGLGKEGR 592

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EA A+F  M+     PN     +L+ C  K    D  ++ L R+ E+   PD
Sbjct: 593 VQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPD 646



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 121/259 (46%), Gaps = 2/259 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            +A   EMA+GL+ + +N     D   ++  +   G +G      ++YEEM   G KPN I
Sbjct: 800  KARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTI 859

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            T+N ++  + ++    +   +Y ++     SP   TY  L+    +    E+    + EM
Sbjct: 860  THNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEM 919

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             + G   +  LYN L+      G  + A E+F  M   E  +PD  ++S M+      GK
Sbjct: 920  LDYGCMPNCPLYNILMNGFGKQGDVETACELFRRM-VKEGIRPDLKSYSIMVDCLCMVGK 978

Query: 278  VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCG 336
            V +A   F E+  +G +P+L     +I   G++QR ++ +   + +   GITPD   +  
Sbjct: 979  VDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNA 1038

Query: 337  CLLNVMTQTPKEELGKLVE 355
             +LN+      EE GK+ E
Sbjct: 1039 LILNLGIAGMVEEAGKMYE 1057



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 97/171 (56%), Gaps = 1/171 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G+VE A  L+ R   E  R D  ++S ++      G  D  L+ +EE+K  G+ P+++
Sbjct: 940  KQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLV 999

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             YN +++ +GR++R  +  +++ EM + G++P+  TY +L+   G A   E+   +Y E+
Sbjct: 1000 CYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEEL 1059

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            + KG++ +V  YN L+   +  G  D A+ +++ M     C+P++ TF+ +
Sbjct: 1060 QLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVG-GCRPNTGTFAQL 1109



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 120/249 (48%), Gaps = 1/249 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG +  A  L+ + +    + D   + TL+  +   G+ D     + EM+A G  P+++T
Sbjct: 310 AGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVT 369

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +  L+D + +  +  +       M   G++PN +TY +L+    R    ++ L ++  M+
Sbjct: 370 FTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSME 429

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G++ +   Y   +      G + +A + FE MK++    P+    ++ +   + +G++
Sbjct: 430 SLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTN-GIVPNIVACNASLYSLAEQGRL 488

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            EA+  FN + + G  P+      L++CYGKA R DD ++ L+ + E G  P+      L
Sbjct: 489 EEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSL 548

Query: 339 LNVMTQTPK 347
           ++ + +  +
Sbjct: 549 IDTLYKADR 557



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 2/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  E    L ++ R   + ++  ++  LI L   +G     L VY  M + G+KP++ 
Sbjct: 170 RGGLREAPVAL-EKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLK 228

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+  +G+ +    V  + +EM   GL PN  T+   +R  GRA   ++   + + M
Sbjct: 229 TYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRM 288

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G    V  Y  L+    + G  + A E+F  MK+S + +PD  T+ +++   S  G 
Sbjct: 289 DDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSH-KPDRVTYITLLDKFSDHGD 347

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   +  ++EM   G+ P++   T LI    K  + D+    L+ + + G+ P+
Sbjct: 348 LDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPN 401



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G    A  +Y R  +E  +     +S L+   G   + +  + + +EM+++G++PN+ 
Sbjct: 204 KSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIY 263

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+   +  +GRA +  +   I K M D G  P+  TY  L+ A   A    +   ++ +M
Sbjct: 264 TFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKM 323

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K    +     Y TLL   +D G  D   E + +M+ ++   PD  TF+ +I      GK
Sbjct: 324 KASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEME-ADGYLPDVVTFTILIDALCKVGK 382

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           V EA    + M + G  PNL    +LI    +  R D+ +   N +  LG+
Sbjct: 383 VDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGL 433



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 2/213 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           D +    L+K     G      NV+ ++ K+  + P++  YN+L+D + +A+       +
Sbjct: 751 DDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGL 810

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M + G +P+  TY   L A G++   ++   +Y EM  +G + +   +N ++     
Sbjct: 811 FYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVK 870

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               D+A +++ D+ S +   P  WT+  +I      G++ EA+  F EML+ G  PN  
Sbjct: 871 SNSLDKAIDLYYDLMSGD-FSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCP 929

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +   L+  +GK    +       R+ + GI PD
Sbjct: 930 LYNILMNGFGKQGDVETACELFRRMVKEGIRPD 962



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 6/216 (2%)

Query: 119 IDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN  +    LY  A  G  +     +  +K  G+ P+ ITYN L+   G+A R     
Sbjct: 468 IVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAI 527

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM +NG  P      SL+    +A   ++   +++ MKE  +  +V  YNTLLA  
Sbjct: 528 KLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGL 587

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEP 295
              G   EA  +F+ M  +++C P++ +F++++  C C+ G+V  A  M   M E    P
Sbjct: 588 GKEGRVQEATALFKGM-IADDCPPNTISFNTLLD-CLCKNGEVDLALKMLFRMTEMNCFP 645

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++    ++I    K  R +      +++ ++ I PD
Sbjct: 646 DVLTYNTVIYGLIKENRVNYAFWLFHQMKKV-IYPD 680



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 95/178 (53%), Gaps = 3/178 (1%)

Query: 121  PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
            PN   ++ L+  +G  G+ +    ++  M   G++P++ +Y+ ++D +    +       
Sbjct: 926  PNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHY 985

Query: 179  YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            ++E+  +GL P+   Y  ++   GR++  E+ LS++ EM+ +G+   +  YN L+     
Sbjct: 986  FEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGI 1045

Query: 239  VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             G  +EA +++E+++  +  +P+ +T++++I   S  G    A A++ +M+  G  PN
Sbjct: 1046 AGMVEEAGKMYEELQ-LKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPN 1102



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 106/234 (45%), Gaps = 3/234 (1%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           N + T+ K+    G         E+M+ +G   N  +Y  L+  + ++    +   +Y+ 
Sbjct: 158 NTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRR 217

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G+ P+  TY++L+ A G+ R  E  + + +EM+  G++ ++  +   + +    G 
Sbjct: 218 MVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGK 277

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            DEA+ I + M  +  C PD  T++ +I      GK++ A+ +F +M  +  +P+     
Sbjct: 278 IDEAYGILKRMDDA-GCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYI 336

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKL 353
           +L+  +      D +    + +   G  PD      L++ + +  K  E  G L
Sbjct: 337 TLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTL 390



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 2/184 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG V+ A  L           +    ++LI     A   D    +++ MK + + P ++
Sbjct: 519 KAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVV 578

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL  +G+  R  +   ++K M  +   PN  ++ +LL    +    +  L +   M
Sbjct: 579 TYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRM 638

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E      V  YNT++         + AF +F  MK      PD  T  +++      G+
Sbjct: 639 TEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKV--IYPDYVTLCTLLPGVIKDGR 696

Query: 278 VSEA 281
           + +A
Sbjct: 697 IEDA 700


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 120/259 (46%), Gaps = 5/259 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A+ L+   +N+    +   ++ LI     +G     + ++  M   GV PN +TY
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTY 393

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++ +   +R      +   M  NG SPN  TY  +++ Y      +  + V   M +
Sbjct: 394 NALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G   ++  YNT++    D G T  A  I + M+    C+PD W+++ +I       K+ 
Sbjct: 454 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG-GCKPDEWSYTELICGFCKISKME 512

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +FNEM++ G  PN    T+LI  Y K ++ D     L  +   G  P+ +    L+
Sbjct: 513 SAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLI 572

Query: 340 NVMTQ----TPKEELGKLV 354
           + +T+    +  EEL K++
Sbjct: 573 HGLTKQNNFSGAEELCKVM 591



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 7/266 (2%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAF 124
           G   K+ + +N    R       +Y+T       +GN   A  + D  R+   + D  ++
Sbjct: 439 GDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSY 498

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + LI  +      +    ++ EM   G+ PN +TY  L+D   + ++     ++ + M  
Sbjct: 499 TELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKR 558

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
           +G  PN  TY  L+    +         + + M E+G+  +V  Y  ++      G T  
Sbjct: 559 SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 618

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A E+F  M   + C P+  T+SS+I      GKV EAE +F E+   G  P+      +I
Sbjct: 619 ALEMFNKM-IEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677

Query: 305 QCYGKAQRTDDVVRALNRLPELGITP 330
           + Y  + + +     L R+ + G  P
Sbjct: 678 EAYIMSGKVEHAFNFLGRMIKAGCQP 703



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 135/305 (44%), Gaps = 13/305 (4%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           D       R+   A+S L+      G     ++ Y  M + GV+PN++ YN +++ + + 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKD 228

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
                 +TI K++ ++ +SP+  TY S++  + R    +  L V+ +M ++G + +   Y
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           +TL+    D G  +EAF++  +M       P + T +  I      G   +A  +F +M 
Sbjct: 289 STLINGLCDSGRVNEAFDLIREM-ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             G EPN++  T+LI     +      +   +R+   G+ P+      L+N++ +  + +
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIK 407

Query: 350 LGKLVECVEKSNSKLGYVVKL--LLEEQDIEGDFKKEATELFNSISKD----------VK 397
              +V  +   N     +V    +++   I GD KK    + N + +           + 
Sbjct: 408 YAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTII 467

Query: 398 KAYCN 402
           K YC+
Sbjct: 468 KGYCD 472



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 1/208 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV  A  +  +    +   D   ++++I  +    + D  L V+ +M   G +PN +TY
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L++ +  + R  +   + +EM  +G+ P  +T    + A       ED   ++ +MK 
Sbjct: 289 STLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKN 348

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG + +V  Y  L++     G    A  +F  M S +   P++ T++++I I     ++ 
Sbjct: 349 KGCEPNVYTYTALISGLCVSGILKVAIGLFHRM-SRDGVFPNTVTYNALINILVENRRIK 407

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
            A  + N M   G  PN+     +I+ Y
Sbjct: 408 YAFVVLNLMGRNGCSPNIVTYNEMIKGY 435



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A  L +  +    R +   ++ LI       NF G   + + M   G+ PN++TY  
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++D + +         ++ +M + G  PN  TY+SL+RA G+    E+  +++ E++  G
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +      Y  ++      G  + AF     M  +  CQP  WT+  +I
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA-GCQPTLWTYGVLI 712


>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 426

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 128/249 (51%), Gaps = 16/249 (6%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM D G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMQDRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  + +++K     +PD+    + I I +  G++ EA  +F + +EAG 
Sbjct: 297 VAYERAGLVAHAKRLLQELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAVEAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
             ++ V   +I  + K ++  +VV   +++  LG  P       +LN          GKL
Sbjct: 352 VKDITVFERMINLFSKHKKYPNVVEVFDKMRGLGYFPHSNVIALVLNA--------YGKL 403

Query: 354 VECVEKSNS 362
            E  +K+NS
Sbjct: 404 HE-FDKANS 411



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G++P+   Y S++  +G+A+   +  ++  EM+  G+      Y TLL M  + 
Sbjct: 68  SRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 QKFLEALSLFSEMREIQ-CSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G+ P+++ Y
Sbjct: 23  GLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRAISIFSRLKRSGIAPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N++++  G+AK   + + +  EM   G+ P+  +Y +LL  Y   +   + LS++ EM+E
Sbjct: 83  NSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLFSEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM + G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   GI  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRCSGIEID 288



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +D LS  ++M+E  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A  IF  +K S    PD   ++SMI +        EA A+ +EM  AG  P+     +L
Sbjct: 62  RAISIFSRLKRS-GIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + Q+  + +   + + E+  + D   C  +++V  Q
Sbjct: 121 LTMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQ 161



 Score = 42.0 bits (97), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R   E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLQELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVKDIT 356

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  +++   + K+   V  ++ +M   G  P+ N  A +L AYG+    +   SVY EM
Sbjct: 357 VFERMINLFSKHKKYPNVVEVFDKMRGLGYFPHSNVIALVLNAYGKLHEFDKANSVYMEM 416

Query: 218 KEKGMQLS 225
           +++G   S
Sbjct: 417 QDEGCAFS 424


>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
 gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
          Length = 832

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 205/457 (44%), Gaps = 47/457 (10%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G ++ AF L+ + +  K R   + FS+L+   G AG  D  + VY EM+  G +P+ 
Sbjct: 320 AKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSA 379

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             + +L+D+  +A +      ++ EM  +G  PN+  Y  ++ ++ ++   E  +SV+++
Sbjct: 380 TMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMSVFKD 439

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G   + + Y+ LL M A  G  D A +I+  M ++   +P   ++ S++T+ + + 
Sbjct: 440 MEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSM-TNAGLRPGLSSYISLLTLLANKR 498

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD---- 332
            V  A  +  EM   G+  ++   + ++  Y K    D  ++ L  +   GI  ++    
Sbjct: 499 LVDVAGKILLEMKAMGYSVDV-CASDVLMIYIKDASVDLALKWLRFMGSSGIKTNNFIIR 557

Query: 333 -RFCGCLLNVMTQTPKEELGKLVECVEKSN-----SKLGYVVKLLLEEQDIE-------- 378
             F  C+ N +  + +  L  LV    K +     S L ++V+   E+++ +        
Sbjct: 558 QLFESCMKNGLYDSARPLLETLVHSAGKVDLVLYTSILAHLVRCQDEDKERQLMSILSAT 617

Query: 379 ---------GDF-----KKEAT-----ELFNSISKDVKKA----YCNCLIDLCVNLNLLE 415
                    G F     +K+       E +  I  ++++     + N L++  V +  + 
Sbjct: 618 KHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGIDYELEEGAARYFVNVLLNYLVLMGQIN 677

Query: 416 NACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 474
            A  + ++    +++   I       WSL +++LS+GAAL A+   ++   K +      
Sbjct: 678 RARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVV 737

Query: 475 PPLLGINTGHGKHKYSDKGLASV---FESHLKELNAP 508
           P  + + TG        + L+SV   FE     L AP
Sbjct: 738 PRRIKLVTGPTLKIVIAQVLSSVESPFEVSKVVLRAP 774



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +Y+        +D + +  +I     +G  D    ++++MK   ++P+   +++L+D
Sbjct: 293 AFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVD 352

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +MG+A R      +Y EM   G  P+   + SL+ +Y +A   +  L ++ EMK+ G + 
Sbjct: 353 SMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRP 412

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +  LY  ++   A  G  + A  +F+DM+ +    P   T+S ++ + +  G+V  A  +
Sbjct: 413 NFGLYTMIIESHAKSGKLEVAMSVFKDMEKA-GFLPTPSTYSCLLEMHAGSGQVDSAMKI 471

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +N M  AG  P L    SL+      +  D   + L  +  +G + D
Sbjct: 472 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVD 518



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 154/334 (46%), Gaps = 10/334 (2%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  +A  +E+AF  + +A+    +ID   ++ L+ L+   G       +YE M+      
Sbjct: 248 YLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLL 307

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  TY  ++ ++ ++ R      ++++M +  L P+++ ++SL+ + G+A   + ++ VY
Sbjct: 308 DGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVY 367

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM+  G + S T++ +L+   A  G  D A  ++++MK S   +P+   ++ +I   + 
Sbjct: 368 MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKS-GFRPNFGLYTMIIESHAK 426

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            GK+  A ++F +M +AGF P     + L++ +  + + D  ++  N +   G+ P    
Sbjct: 427 SGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPG--- 483

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK------LLLEEQDIEGDFKKEATEL 388
               ++++T    + L  +   +      +GY V       L++  +D   D   +    
Sbjct: 484 LSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKDASVDLALKWLRF 543

Query: 389 FNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
             S            L + C+   L ++A  LLE
Sbjct: 544 MGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLE 577



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 108/220 (49%), Gaps = 1/220 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
            A++ +I+    A   +     +++ +  G K +  TYNNL+        P++   IY+ 
Sbjct: 240 GAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYES 299

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M       + +TY  ++ +  ++   +    ++++MKE+ ++ S +++++L+      G 
Sbjct: 300 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGR 359

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D + +++ +M+   + +P +  F S+I   +  GK+  A  +++EM ++GF PN  + T
Sbjct: 360 LDTSMKVYMEMQGFGH-RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYT 418

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
            +I+ + K+ + +  +     + + G  P      CLL +
Sbjct: 419 MIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEM 458



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 125/273 (45%), Gaps = 16/273 (5%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARYGEDTLSVYR 215
           Y  L D + + +    ++++++EM  +  S    ++  Y  +++   +A   E     ++
Sbjct: 204 YVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFGAYNQVIQYLAKAEKLEVAFCCFK 263

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           + +E G ++    YN L+ +  + G   +AFEI+E M+ +++   D  T+  +I   +  
Sbjct: 264 KAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLL-DGSTYELIIPSLAKS 322

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G++  A  +F +M E    P+  V +SL+   GKA R D  ++    +   G  P     
Sbjct: 323 GRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMF 382

Query: 336 GCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
             L++   +  K +   +L + ++KS    G+     L    IE   K    E+  S+ K
Sbjct: 383 VSLIDSYAKAGKLDTALRLWDEMKKS----GFRPNFGLYTMIIESHAKSGKLEVAMSVFK 438

Query: 395 DVKKA-------YCNCLIDLCVNLNLLENACKL 420
           D++KA         +CL+++      +++A K+
Sbjct: 439 DMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 471


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 1/244 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R GN E A  ++ R + ++ +     ++ +I LYG A        +Y EM++   KPN+ 
Sbjct: 241 RKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNIC 300

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R     + + I++++ ++GL P+   Y +L+ +Y RA Y      ++  M
Sbjct: 301 TYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM 360

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN ++      G   +A  +FE+MK      P   +   +++  S    
Sbjct: 361 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL-GIAPTMKSHMLLLSAYSKARD 419

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V++ EA+  EM E G EP+ FVL S++  YG+  +   + + L  +     T D      
Sbjct: 420 VTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNI 479

Query: 338 LLNV 341
           L+N+
Sbjct: 480 LINI 483



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 130/276 (47%), Gaps = 2/276 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G  E A  ++++ + +    D   ++ L++ Y  AG   G   ++  M+ +G +P+ 
Sbjct: 310 AREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDR 369

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN ++D  GRA      + +++EM   G++P   ++  LL AY +AR      ++ +E
Sbjct: 370 ASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKE 429

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G++    + N++L +   +G   +  +I  +M++   C  D  T++ +I I    G
Sbjct: 430 MSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGP-CTADISTYNILINIYGKAG 488

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +   E +F E+ E  F P++   TS I  Y + +     +     + + G  PD     
Sbjct: 489 FLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAK 548

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLL 371
            LL+  +   + E++  ++  + K  +    V KL+
Sbjct: 549 VLLSACSSEEQVEQVTSVLRTMHKGVTVSSLVPKLM 584



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 40/273 (14%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTA--------------------------------- 134
           LY +    ++    + ++ LIK Y  A                                 
Sbjct: 177 LYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIE 236

Query: 135 ------GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
                 GN +  ++V++ MK    KP   TYN +++  G+A + +    +Y EM  +   
Sbjct: 237 GLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCK 296

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           PN  TY +L+ A+ R    E    ++ +++E G++  V +YN L+   +  GY   A EI
Sbjct: 297 PNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEI 356

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           F  M+    C+PD  +++ M+      G  S+AEA+F EM   G  P +     L+  Y 
Sbjct: 357 FSLMQHM-GCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYS 415

Query: 309 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           KA+        +  + E G+ PD      +LN+
Sbjct: 416 KARDVTKCEAIVKEMSENGVEPDTFVLNSMLNL 448



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 38/217 (17%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P++I +N L+D  G+  +  + +++Y ++ ++   P  +TYA L++AY  A   E    
Sbjct: 152 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 211

Query: 213 VYREMKEKGMQ---LSVTLYNTLL-AMCADVGYTDEAFEIFEDMK--------------- 253
           V  EM+   +    + VT+YN  +  +    G T+EA ++F+ MK               
Sbjct: 212 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI 271

Query: 254 -------------------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                               S  C+P+  T+++++   +  G   +AE +F ++ E G E
Sbjct: 272 NLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLE 331

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           P+++V  +L++ Y +A          + +  +G  PD
Sbjct: 332 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPD 368


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 1/223 (0%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             ++  +E A  LY    +E +   P  +  L+     AG      N++ EM   G KPN 
Sbjct: 854  VKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNC 913

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
              YN LL+    A     V  I+++M + G++P+  +Y  L+     A    D LS +R+
Sbjct: 914  TIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQ 973

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + E G++  + +YN L+         +EA  +F +MK  +   P+ +T++S+I      G
Sbjct: 974  LLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMK-KKGIVPNLYTYNSLILHLGKAG 1032

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            K SEA  M+ E+L  G++PN+F   +LI+ Y  +  TD+   A
Sbjct: 1033 KASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAA 1075



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 1/230 (0%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            +++A  L+   +      D   ++ ++   G +   +  L V  EM   G +   +TYN 
Sbjct: 789  IDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNT 848

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            ++  + ++KR  Q   +Y  +   G SP   TY  LL    +A    D  +++ EM E G
Sbjct: 849  IISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYG 908

Query: 222  MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             + + T+YN LL      G T+   +IFE M   +   PD  +++ +I      G++++ 
Sbjct: 909  CKPNCTIYNILLNGHRIAGNTENVCQIFEKM-VEQGINPDIKSYTVLIDTLCTAGRLNDG 967

Query: 282  EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + F ++LE G EP+L +   LI   GK++R ++ V   N + + GI P+
Sbjct: 968  LSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPN 1017



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 3/213 (1%)

Query: 121 PNAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN ++ +  I  YG +G     +  YE MK+ G+ P++   N +L ++ R+ R    K +
Sbjct: 421 PNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRV 480

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E+ D G+SP+  TY  +++   +A   ++ ++ + +M E G    V   N+L+     
Sbjct: 481 FYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYK 540

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  +EA+++F  +K  +  +P + T++++++     GKV E   +  EM  +   PNL 
Sbjct: 541 GGKGNEAWKLFHQLKEMK-IEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLI 599

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +++ C  K    +  +  L  + E G TPD
Sbjct: 600 TYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPD 632



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 99   AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            AGN E    ++++   +    D  +++ LI    TAG  +  L+ + ++  +G++P++I 
Sbjct: 926  AGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLII 985

Query: 159  YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            YN L+D +G+++R  +   ++ EM   G+ PN  TY SL+   G+A    +   +Y E+ 
Sbjct: 986  YNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELL 1045

Query: 219  EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             KG + +V  YN L+   +  G TD A+  ++ +    + +      +++I+       +
Sbjct: 1046 IKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLK------TALISGLVDENLI 1099

Query: 279  SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
            + AE +F EM   G  P+ F    ++   GK+ R +++++    + E
Sbjct: 1100 NIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAE 1146



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 111/242 (45%), Gaps = 3/242 (1%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PN +S    I++ G A  FD    +  +M+  G KP+++T+  ++  +  A R 
Sbjct: 240 EARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRL 299

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
              K ++ +M  +   P+  TY +LL   G +   +  + ++  M   G   ++  Y  +
Sbjct: 300 SDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAV 359

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +     VG  DEA  +F++MK  +   P+ ++++S+I+          A  +FN M   G
Sbjct: 360 VDALCQVGRLDEALAVFDEMKE-KGISPEQYSYNSLISGFLKADMFDRALELFNHMNACG 418

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
             PN +     I  YGK+ ++   ++    +   GI PD      +L+ + ++ +  + K
Sbjct: 419 PSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAK 478

Query: 353 LV 354
            V
Sbjct: 479 RV 480



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 117/269 (43%), Gaps = 39/269 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G++   F   D  + +  + +   F+T+    G  G           M+  G+  N  
Sbjct: 123 RVGDMAQVF---DLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGY 179

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + ++    +   +YK M ++G+SP+  TY+ L+ ++G+ R  +  L +  EM
Sbjct: 180 TYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEM 239

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G++ +V  Y   + +       DEA++I   M+ S  C+PD  T + +I +    G+
Sbjct: 240 EARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDS-GCKPDVVTHTVVIQVLCDAGR 298

Query: 278 VSEAEAMF-----------------------------------NEMLEAGFEPNLFVLTS 302
           +S+A+ +F                                   N M+  G+  N+   T+
Sbjct: 299 LSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTA 358

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++    +  R D+ +   + + E GI+P+
Sbjct: 359 VVDALCQVGRLDEALAVFDEMKEKGISPE 387



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 116/268 (43%), Gaps = 34/268 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   + A+ +  +  +   + D    + +I++   AG      +V+ +MKA   KP+ +
Sbjct: 260 QAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRV 319

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD  G +     V  I+  M  +G + N  +Y +++ A  +    ++ L+V+ EM
Sbjct: 320 TYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEM 379

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS----------------------- 254
           KEKG+      YN+L++        D A E+F  M +                       
Sbjct: 380 KEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQS 439

Query: 255 -----------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                      S+   PD    +++++  +  G++  A+ +F E+ + G  P+    T +
Sbjct: 440 LKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMM 499

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I+C  KA + D+ +   + + E G  PD
Sbjct: 500 IKCCSKASKADEAMNFFSDMVETGCVPD 527



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 12/258 (4%)

Query: 143  VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
            ++ + K +GV     +YN+L+  +         + ++ EM   G  P+  TY  +L A G
Sbjct: 760  LFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMG 819

Query: 203  RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            ++   E+ L V  EM  KG + +   YNT+++        ++A +++ ++ S E   P  
Sbjct: 820  KSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMS-EGFSPTP 878

Query: 263  WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             T+  ++      GK+ +AE +FNEMLE G +PN  +   L+  +  A  T++V +   +
Sbjct: 879  CTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEK 938

Query: 323  LPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 380
            + E GI PD +    L++ +    +  + L    + +E     LG    L++    I+G 
Sbjct: 939  MVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLE-----LGLEPDLIIYNLLIDGL 993

Query: 381  FKKEATE----LFNSISK 394
             K E  E    LFN + K
Sbjct: 994  GKSERIEEAVCLFNEMKK 1011



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 110/238 (46%), Gaps = 2/238 (0%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           +Y  ++G    A   Y+  +++    D  A + ++     +G       V+ E+K +GV 
Sbjct: 431 NYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVS 490

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ ITY  ++    +A +  +    + +M + G  P+     SL+    +   G +   +
Sbjct: 491 PDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKL 550

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + ++KE  ++ +   YNTLL+     G   E   + E+M  S +  P+  T+++++   S
Sbjct: 551 FHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIH-PPNLITYNTVLDCLS 609

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G+V+ A  M   M E G  P+L    +++    K +R ++  R   ++ ++ + PD
Sbjct: 610 KNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKI-LAPD 666



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 23/244 (9%)

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L+R   + +   +   ++ + K  G+ L    YN+L+    D    D A ++F +MK   
Sbjct: 744 LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRL- 802

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
            C PD +T++ ++       ++ E   +  EM   G+E       ++I    K++R +  
Sbjct: 803 GCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQA 862

Query: 317 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY-------VVK 369
           +     L   G +P     G LL+ + +      GK+V+     N  L Y       +  
Sbjct: 863 IDLYYNLMSEGFSPTPCTYGPLLDGLLKA-----GKMVDAENLFNEMLEYGCKPNCTIYN 917

Query: 370 LLLEEQDIEGDFKKEATELF-----NSISKDVKKAYCNCLIDLCVNLNL---LENACKLL 421
           +LL    I G+  +   ++F       I+ D+ K+Y   +  LC    L   L    +LL
Sbjct: 918 ILLNGHRIAGN-TENVCQIFEKMVEQGINPDI-KSYTVLIDTLCTAGRLNDGLSYFRQLL 975

Query: 422 ELGL 425
           ELGL
Sbjct: 976 ELGL 979


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 2/222 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +AF   IK +  AG     + V+E M+  G    + ++N LL  + +     + + ++ +
Sbjct: 263 DAFKVAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDK 322

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M     SP+  +Y +L+ A+  AR   +   V+ EM EKGM   V ++NT++        
Sbjct: 323 MHGQ-YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQR 381

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             EA ++FE MK+ +   P+ WT++ +I     +GK+  A   F EM EA  +P++   T
Sbjct: 382 RPEAVKMFELMKA-KGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYT 440

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            L+  YG A++ D V   L  + + G  PD R    L+ ++T
Sbjct: 441 CLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLT 482



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 98/200 (49%), Gaps = 2/200 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D+   + +  D  +++ L+  +  A N      V+ EM   G+ P+++ +N +++ + 
Sbjct: 319 VFDKMHGQ-YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLL 377

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R +R  +   +++ M   G  PN  TY  L+R + +    +  +  + EM+E   Q  V 
Sbjct: 378 RGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVA 437

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  LL    +    D    + E+M + + C PD+ T++++I + + R    +A  ++ +
Sbjct: 438 TYTCLLVGYGNAKQMDRVTAVLEEM-TQKGCPPDARTYNALIKLLTNRNMPDDAARIYKK 496

Query: 288 MLEAGFEPNLFVLTSLIQCY 307
           M++ G EP +     +++ Y
Sbjct: 497 MIKKGLEPTIHTYNMMMKSY 516



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 109/244 (44%), Gaps = 3/244 (1%)

Query: 87  ASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 146
           A K+  KS+   AG ++ A G+++  R   +     +F+ L+      G       V+++
Sbjct: 264 AFKVAIKSF-AAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDK 322

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           M      P++ +Y  L+     A+   +   ++ EM + G+ P+   + +++    R + 
Sbjct: 323 MHG-QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQR 381

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
             + + ++  MK KG   +V  Y  L+      G  D A E FE+M+ ++ CQPD  T++
Sbjct: 382 RPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAK-CQPDVATYT 440

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            ++       ++    A+  EM + G  P+     +LI+        DD  R   ++ + 
Sbjct: 441 CLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKK 500

Query: 327 GITP 330
           G+ P
Sbjct: 501 GLEP 504



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 6/198 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ LI+ +   G  D  +  +EEM+    +P++ TY  LL   G AK+  +V  +
Sbjct: 399 PNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAV 458

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--MC 236
            +EMT  G  P+  TY +L++        +D   +Y++M +KG++ ++  YN ++     
Sbjct: 459 LEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFV 518

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            D  Y      ++E+M     C PD  +++  I      G+  EA     EM+  G +  
Sbjct: 519 GDSNYA-MGCAVWEEMHQRGIC-PDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMKAP 576

Query: 297 LFVLTSLIQCYGKAQRTD 314
                     + KA + D
Sbjct: 577 QIDYNKFAADFSKAGKPD 594



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++MA   ++  +  K + D   ++ L+  YG A   D    V EEM   G  P+  
Sbjct: 413 KQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDAR 472

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYR 215
           TYN L+  +     P     IYK+M   GL P  +TY  ++++Y  G + Y     +V+ 
Sbjct: 473 TYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAMGC-AVWE 531

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           EM ++G+   V  Y   +      G  +EA++  E+M
Sbjct: 532 EMHQRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEM 568



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 62/298 (20%)

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYRE---------------------------- 216
            G +    TY  +L   G+ R  E  +++ +E                            
Sbjct: 222 GGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIKSFAAAGEIKNA 281

Query: 217 ------MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MI 269
                 M++ G    V  +N LL   A  G   EA ++F+ M    +  PD  ++++ M+
Sbjct: 282 VGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQYS--PDLRSYTALML 339

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
             C+ R  V EA  ++NEMLE G +P++ V  ++I+   + QR  + V+    +   G  
Sbjct: 340 AWCNARNLV-EAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPP 398

Query: 330 PDDRFCGCLLNVMTQTPKEELGKLVECVE-----KSNSKLGYVVKLLLEEQDIEGDFKKE 384
           P+      L+    +  K ++   +EC E     K    +     LL+      G    +
Sbjct: 399 PNVWTYTMLIRDHCKQGKMDMA--MECFEEMQEAKCQPDVATYTCLLV------GYGNAK 450

Query: 385 ATELFNSISKDVKKAYC-------NCLIDLCVNLNLLENAC----KLLELGLTLEVYT 431
             +   ++ +++ +  C       N LI L  N N+ ++A     K+++ GL   ++T
Sbjct: 451 QMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHT 508


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 2/222 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +AF   IK +  AG     + V+E M+  G    + ++N LL  + +     + + ++ +
Sbjct: 263 DAFKVAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDK 322

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M     SP+  +Y +L+ A+  AR   +   V+ EM EKGM   V ++NT++        
Sbjct: 323 MHGQ-YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQR 381

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             EA ++FE MK+ +   P+ WT++ +I     +GK+  A   F EM EA  +P++   T
Sbjct: 382 RPEAVKMFELMKA-KGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYT 440

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            L+  YG A++ D V   L  + + G  PD R    L+ ++T
Sbjct: 441 CLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLT 482



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 98/200 (49%), Gaps = 2/200 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D+   + +  D  +++ L+  +  A N      V+ EM   G+ P+++ +N +++ + 
Sbjct: 319 VFDKMHGQ-YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLL 377

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R +R  +   +++ M   G  PN  TY  L+R + +    +  +  + EM+E   Q  V 
Sbjct: 378 RGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVA 437

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  LL    +    D    + E+M + + C PD+ T++++I + + R    +A  ++ +
Sbjct: 438 TYTCLLVGYGNAKQMDRVTAVLEEM-TQKGCPPDARTYNALIKLLTNRNMPDDAARIYKK 496

Query: 288 MLEAGFEPNLFVLTSLIQCY 307
           M++ G EP +     +++ Y
Sbjct: 497 MIKKGLEPTIHTYNMMMKSY 516



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 109/244 (44%), Gaps = 3/244 (1%)

Query: 87  ASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 146
           A K+  KS+   AG ++ A G+++  R   +     +F+ L+      G       V+++
Sbjct: 264 AFKVAIKSF-AAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDK 322

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           M      P++ +Y  L+     A+   +   ++ EM + G+ P+   + +++    R + 
Sbjct: 323 MHG-QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQR 381

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
             + + ++  MK KG   +V  Y  L+      G  D A E FE+M+ ++ CQPD  T++
Sbjct: 382 RPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAK-CQPDVATYT 440

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            ++       ++    A+  EM + G  P+     +LI+        DD  R   ++ + 
Sbjct: 441 CLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKK 500

Query: 327 GITP 330
           G+ P
Sbjct: 501 GLEP 504



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 6/198 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ LI+ +   G  D  +  +EEM+    +P++ TY  LL   G AK+  +V  +
Sbjct: 399 PNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAV 458

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--MC 236
            +EMT  G  P+  TY +L++        +D   +Y++M +KG++ ++  YN ++     
Sbjct: 459 LEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFV 518

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            D  Y      ++E+M     C PD  +++  I      G+  EA     EM+  G +  
Sbjct: 519 GDSNYA-MGCAVWEEMHQRGIC-PDVNSYTVFINRHIRHGRPEEAYKYIEEMINKGMKAP 576

Query: 297 LFVLTSLIQCYGKAQRTD 314
                     + KA + D
Sbjct: 577 QIDYNKFAADFSKAGKPD 594



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++MA   ++  +  K + D   ++ L+  YG A   D    V EEM   G  P+  
Sbjct: 413 KQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDAR 472

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYR 215
           TYN L+  +     P     IYK+M   GL P  +TY  ++++Y  G + Y     +V+ 
Sbjct: 473 TYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAMGC-AVWE 531

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           EM ++G+   V  Y   +      G  +EA++  E+M
Sbjct: 532 EMHQRGICPDVNSYTVFINRHIRHGRPEEAYKYIEEM 568



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 62/298 (20%)

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYRE---------------------------- 216
            G +    TY  +L   G+ R  E  +++ +E                            
Sbjct: 222 GGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIKSFAAAGEIKNA 281

Query: 217 ------MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MI 269
                 M++ G    V  +N LL   A  G   EA ++F+ M    +  PD  ++++ M+
Sbjct: 282 VGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQYS--PDLRSYTALML 339

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
             C+ R  V EA  ++NEMLE G +P++ V  ++I+   + QR  + V+    +   G  
Sbjct: 340 AWCNARNLV-EAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPP 398

Query: 330 PDDRFCGCLLNVMTQTPKEELGKLVECVE-----KSNSKLGYVVKLLLEEQDIEGDFKKE 384
           P+      L+    +  K ++   +EC E     K    +     LL+      G    +
Sbjct: 399 PNVWTYTMLIRDHCKQGKMDMA--MECFEEMQEAKCQPDVATYTCLLV------GYGNAK 450

Query: 385 ATELFNSISKDVKKAYC-------NCLIDLCVNLNLLENAC----KLLELGLTLEVYT 431
             +   ++ +++ +  C       N LI L  N N+ ++A     K+++ GL   ++T
Sbjct: 451 QMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHT 508


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 118/260 (45%), Gaps = 2/260 (0%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           + Y T+   VEM  GL D         D   FS LI  Y   G  D  + V+ +M+  G+
Sbjct: 344 QGYATKGALVEM-HGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 402

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            PN +TY  ++  + ++ R       +++M D GLSP    Y SL+         E    
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 462

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +  EM ++G+ L+   +N+++      G   E+ ++FE M      +P+  T++++I   
Sbjct: 463 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRI-GVKPNVITYNTLINGY 521

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              GK+ EA  + + M+  G +PN    ++LI  Y K  R +D +     +   G++PD 
Sbjct: 522 CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDI 581

Query: 333 RFCGCLLNVMTQTPKEELGK 352
                +L  + QT +    K
Sbjct: 582 ITYNIILQGLFQTRRTAAAK 601



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 117/230 (50%), Gaps = 1/230 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D   + Y EM   G+ P+++TYN+++  + +A+   +   + 
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ P+  TY S+L  Y  +   ++ +   ++M+  G++  V  Y+ L+      
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA +IF+ M +    +P+  T+ +++   + +G + E   + + M+  G  P+ +V
Sbjct: 315 GRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            + LI  Y K  + D  +   +++ + G+ P+    G ++ ++ ++ + E
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A+  Y    +     D   ++++I     A   D  + V   M   GV P+ +
Sbjct: 208 KEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 267

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN++L     + +P +     K+M  +G+ P+  TY+ L+    +     +   ++  M
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++  +T Y TLL   A  G   E   +  D+       PD + FS +I   + +GK
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPDHYVFSILICAYAKQGK 386

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           V +A  +F++M + G  PN     ++I    K+ R +D +    ++ + G++P
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 3/180 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++TLI  Y  AG  D  + +   M ++G+KPN +TY+ L++   +  R     
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++KEM  +G+SP+  TY  +L+   + R       +Y  + E G Q+ ++ YN +L   
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                TD+A ++F+++    + + ++ TF+ MI      G+  EA+ +F      G  PN
Sbjct: 627 CKNKLTDDALQMFQNL-CLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 5/246 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           RAG +++ F        + +R+D  AF+ L+K L       D    V   M  +G  PN+
Sbjct: 99  RAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNV 158

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRARYGEDTLSV 213
            +YN LL  +    R  +   +   M D+   G  P+  +Y +++  + +    +   S 
Sbjct: 159 FSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 218

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y EM ++G+   V  YN+++A        D+A E+   M  +    PD  T++S++    
Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYC 277

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G+  EA     +M   G EP++   + L+    K  R  +  +  + + + G+ P+  
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337

Query: 334 FCGCLL 339
             G LL
Sbjct: 338 TYGTLL 343



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 116/255 (45%), Gaps = 1/255 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + +   + TL++ Y T G       + + M   G+ P
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 369

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +   ++ L+    +  +  Q   ++ +M   GL+PN  TY +++    ++   ED +  +
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 429

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++G+     +YN+L+         + A E+  +M     C  ++  F+S+I     
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL-NTIFFNSIIDSHCK 488

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+V E+E +F  M+  G +PN+    +LI  Y  A + D+ ++ L+ +  +G+ P+   
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548

Query: 335 CGCLLNVMTQTPKEE 349
              L+N   +  + E
Sbjct: 549 YSTLINGYCKISRME 563



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 117/261 (44%), Gaps = 9/261 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+++I  +   G       ++E M  IGVKPN+ITYN L++    A +  +   +   M 
Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL PN  TY++L+  Y +    ED L +++EM+  G+   +  YN +L        T 
Sbjct: 539 SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-EAEAMFNEMLEAGFEPNLFVLTS 302
            A E++  ++ +E+      +  ++I    C+ K++ +A  MF  +     +        
Sbjct: 599 AAKELY--VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNI 656

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVECVEKS- 360
           +I    K  R D+           G+ P+   +     N++ Q   EEL +L   +E + 
Sbjct: 657 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716

Query: 361 ----NSKLGYVVKLLLEEQDI 377
               +  L ++V+ LL+  +I
Sbjct: 717 CTVDSGMLNFIVRELLQRGEI 737



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 8/129 (6%)

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI--FEDMK--SSENCQPDSW 263
           ED   V+ E+  +G   S+   N  LA   DV     A  +  +  M    ++   PD  
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALA---DVARDSPAAAVSRYNRMARAGADEVTPDLC 88

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR-ALNR 322
           T+  +I  C   G++    A    +++ GF  +    T L++     +RT D +   L R
Sbjct: 89  TYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 148

Query: 323 LPELGITPD 331
           + ELG  P+
Sbjct: 149 MTELGCIPN 157


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 111/215 (51%), Gaps = 5/215 (2%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DPN   ++ LI  +  A   +  + + EEM+  G  PN++TYN L+D + +       + 
Sbjct: 176 DPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQD 235

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMC 236
           + K+M + G +PN  T+ SL+  + +    +D   +   M  KGM+ +V  Y+ L+  +C
Sbjct: 236 VVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC 295

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
               +  EA E+ E+MK +    PD++T+S++I       K+ EAE M   M  +G  P+
Sbjct: 296 KSQKFL-EAKEVLEEMK-TRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 353

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + V +S+I  + K+ +  +  + L  + +   +PD
Sbjct: 354 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 388



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 4/233 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG++  A  L +  ++  +  D    + +I     AG+ DG ++    ++++G  PN++T
Sbjct: 125 AGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD---HLRSMGCDPNVVT 181

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    RAK+  +   + +EM + G  PN  TY  L+ A  +         V ++M 
Sbjct: 182 YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 241

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E G   +V  +N+L+      G  D+A ++   M  ++  +P+  T+S++I       K 
Sbjct: 242 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM-VAKGMRPNVVTYSALIDGLCKSQKF 300

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EA+ +  EM   G  P+ F  ++LI    KA + ++  + L R+   G TPD
Sbjct: 301 LEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 353



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 115/228 (50%), Gaps = 12/228 (5%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F++L+  +   GN D    +   M A G++PN++TY+ L+D + ++++  + K +
Sbjct: 247 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEV 306

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM   G++P+  TY++L+    +A   E+   + R M   G    V +Y++++     
Sbjct: 307 LEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCK 366

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNL 297
            G   EA +  ++M+      PD  T++++I      GK++EA+ +  +M E+G   P++
Sbjct: 367 SGKLLEAQKTLQEMRKQRK-SPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDV 425

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCGC 337
              +++I    K+    +  + L+R+ + G  PD        D  C C
Sbjct: 426 VTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC 473



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 4/212 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++ +I  +  AG+    L + EEMK+ G  P+  T+  ++  M  A     +    
Sbjct: 111 DVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANA---GDLDGAM 167

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +   G  PN  TY +L+ A+ RA+  E+ + +  EM+E+G   ++  YN L+     +
Sbjct: 168 DHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKL 227

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
                A ++ + M       P+  TF+S++     RG V +A  +   M+  G  PN+  
Sbjct: 228 SMVGAAQDVVKKMIEG-GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT 286

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++LI    K+Q+  +    L  +   G+TPD
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEMKTRGVTPD 318



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 37/270 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GNV+ A  L      +  R +   +S LI     +  F     V EEMK  GV P+  
Sbjct: 261 KRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAF 320

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+  + +A +  + + + + M  +G +P+   Y+S++ A+ ++    +     +EM
Sbjct: 321 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 380

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT------- 270
           +++     V  YNT++     +G   EA  I E M+ S +  PD  T+S++I        
Sbjct: 381 RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDM 440

Query: 271 -----------------------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
                                        +C C G++ EAE +   M  AG  PN+   T
Sbjct: 441 LVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC-GRLEEAEYLLQGMKRAGCAPNVVTYT 499

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +LI    KA++ D+  R +  +   G  P+
Sbjct: 500 TLISGLCKARKVDEAERVMEEMRNAGCPPN 529



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 109/230 (47%), Gaps = 4/230 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  +E A  +  R        D   +S++I  +  +G         +EM+     P+++
Sbjct: 331 KADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVV 390

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++D + +  +  + + I ++M ++G + P+  TY++++    ++    +   +   
Sbjct: 391 TYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDR 450

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           M + G    V  Y T++      G  +EA  + + MK +  C P+  T++++I+ +C  R
Sbjct: 451 MCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA-GCAPNVVTYTTLISGLCKAR 509

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
            KV EAE +  EM  AG  PNL    +++     + R  +  + + R+ +
Sbjct: 510 -KVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 558



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 1/147 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           + + M   G  P+++TY  ++D + +  R  + + + + M   G +PN  TY +L+    
Sbjct: 447 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLC 506

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPD 261
           +AR  ++   V  EM+  G   ++  YNT++      G   EA ++ + MK     C PD
Sbjct: 507 KARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPD 566

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEM 288
           + T+ +++        V EAE +  +M
Sbjct: 567 AATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 4/179 (2%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P++ +YN ++     A        + +EM   G +P+  T+  ++ A   A   +  + 
Sbjct: 109 EPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD 168

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
             R M   G   +V  Y  L+A  A     +EA ++ E+M+    C P+  T++ ++   
Sbjct: 169 HLRSM---GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMR-ERGCPPNLVTYNVLVDAL 224

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                V  A+ +  +M+E GF PN+    SL+  + K    DD  + L  +   G+ P+
Sbjct: 225 CKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPN 283



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 2/161 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L DR        D   ++T+I      G  +    + + MK  G  PN++TY  L+  + 
Sbjct: 447 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLC 506

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-- 225
           +A++  + + + +EM + G  PN  TY +++     +   ++   + + MK+   + S  
Sbjct: 507 KARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPD 566

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
              Y T++          EA ++ E MKS+ + Q +  + +
Sbjct: 567 AATYRTIVNALMSSDLVQEAEQLLEQMKSTTSSQQEQGSLT 607



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 7/142 (4%)

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           +WN   SLL+   R +   +   ++R       +  V  YN +++   + G    A E+ 
Sbjct: 79  SWN---SLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELL 135

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           E+MKS+    PD++T + +IT  +  G +  A    + +   G +PN+   T+LI  + +
Sbjct: 136 EEMKSA-GFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAAFAR 191

Query: 310 AQRTDDVVRALNRLPELGITPD 331
           A++ ++ ++ L  + E G  P+
Sbjct: 192 AKKLEEAMKLLEEMRERGCPPN 213



 Score = 38.5 bits (88), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           +N+LL +        EA ++F   +   +C+PD  +++ +I+     G +  A  +  EM
Sbjct: 80  WNSLLQVLVRCKKHREAGDLFRS-ELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 347
             AGF P+ F  T +I     A   D    A++ L  +G  P+      L+    +  K 
Sbjct: 139 KSAGFAPDAFTHTPIITAMANAGDLDG---AMDHLRSMGCDPNVVTYTALIAAFARAKKL 195

Query: 348 EELGKLVE 355
           EE  KL+E
Sbjct: 196 EEAMKLLE 203


>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           virgata]
          Length = 424

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   +  N++TYN+++   G+     
Sbjct: 184 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHE 243

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T+ 
Sbjct: 244 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMX 303

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++KS +N   D     + I I +  G++ EA  +F + ++AG 
Sbjct: 304 VAYERAGLVAHAKRLLHELKSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGE 358

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +V+   +++  LG  PD      +LN
Sbjct: 359 VKDITVFERMIHLFSKYKKYANVIEVFDKMRGLGYFPDSNVIALVLN 405



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 2   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 61

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  + 
Sbjct: 62  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNT 121

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 122 ASYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EPN+    +L++ YG A+
Sbjct: 181 GMRKMGIEPNVVSYNTLLRVYGDAE 205



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL 
Sbjct: 70  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLT 129

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++ 
Sbjct: 130 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 189

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  YNTLL +  D     EA  +F  M+  +N   +  T++SM+ I     +  +A  +
Sbjct: 190 NVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIVQNVVTYNSMMMIYGKTLEHEKANNL 248

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 249 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 295



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++G  G  D    +++++++ GV+ + + Y  +     RA      K
Sbjct: 257 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAYERAGLVAHAK 316

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 317 RLLHELKSPDNIPR-DTAIHILAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLF 372

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEM 288
           +         E+F+ M+      PDS   + +  + +  GK+ E   A  ++ EM
Sbjct: 373 SKYKKYANVIEVFDKMRGL-GYFPDS---NVIALVLNAYGKLHEFDKANGVYMEM 423


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 120/259 (46%), Gaps = 5/259 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A+ L+   +N+    +   ++ LI     +G     + ++  M   GV PN +TY
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 393

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++ +   +R      +   M  NG SPN  TY  +++ Y      +  + V   M +
Sbjct: 394 NALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G   ++  YNT++    D G T  A  I + M+    C+PD W+++ +I       K+ 
Sbjct: 454 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG-GCKPDEWSYTELICGFCKISKME 512

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +FNEM++ G  PN    T+LI  Y K ++ D     L  +   G  P+ +    L+
Sbjct: 513 SAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLI 572

Query: 340 NVMTQ----TPKEELGKLV 354
           + +T+    +  EEL K++
Sbjct: 573 HGLTKQNNFSGAEELCKVM 591



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 7/266 (2%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAF 124
           G   K+ + +N    R       +Y+T       +GN   A  + D  R+   + D  ++
Sbjct: 439 GDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSY 498

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + LI  +      +    ++ EM   G+ PN +TY  L+D   + ++     ++ + M  
Sbjct: 499 TELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKR 558

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
           +G  PN  TY  L+    +         + + M E+G+  +V  Y  ++      G T  
Sbjct: 559 SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 618

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A E+F  M   + C P+  T+SS+I      GKV EAE +F E+   G  P+      +I
Sbjct: 619 ALEMFNKM-IEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 677

Query: 305 QCYGKAQRTDDVVRALNRLPELGITP 330
           + Y  + + +     L R+ + G  P
Sbjct: 678 EAYIMSGKVEHAFNFLGRMIKAGCQP 703



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 135/305 (44%), Gaps = 13/305 (4%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           D       R+   A+S L+      G     ++ Y  M + GV+PN++ YN +++ + + 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKD 228

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
                 +TI K++ ++ +SP+  TY S++  + R    +  L V+ +M ++G + +   Y
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           +TL+    D G  +EAF++  +M       P + T +  I      G   +A  +F +M 
Sbjct: 289 STLINGLCDSGRVNEAFDLIREM-ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             G EPN++  T+LI     +      +   +R+   G+ P+      L+N++ +  + +
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIK 407

Query: 350 LGKLVECVEKSNSKLGYVVKL--LLEEQDIEGDFKKEATELFNSISKD----------VK 397
              +V  +   N     +V    +++   I GD KK    + N + +           + 
Sbjct: 408 YAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTII 467

Query: 398 KAYCN 402
           K YC+
Sbjct: 468 KGYCD 472



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 1/208 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV  A  +  +    +   D   ++++I  +    + D  L V+ +M   G +PN +TY
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L++ +  + R  +   + +EM  +G+ P  +T    + A       ED   ++ +MK 
Sbjct: 289 STLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKN 348

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG + +V  Y  L++     G    A  +F  M S +   P++ T++++I I     ++ 
Sbjct: 349 KGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVFPNTVTYNALINILVENRRIK 407

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
            A  + N M   G  PN+     +I+ Y
Sbjct: 408 YAFVVLNLMGRNGCSPNIVTYNEMIKGY 435



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A  L +  +    R +   ++ LI       NF G   + + M   G+ PN++TY  
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++D + +         ++ +M + G  PN  TY+SL+RA G+    E+  +++ E++  G
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +      Y  ++      G  + AF     M  +  CQP  WT+  +I
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA-GCQPTLWTYGVLI 712


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 1/244 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R GN E A  ++ R + ++ +     ++ +I LYG A        +Y EM++   KPN+ 
Sbjct: 263 RKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNIC 322

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R     + + I++++ ++GL P+   Y +L+ +Y RA Y      ++  M
Sbjct: 323 TYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM 382

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN ++      G   +A  +FE+MK      P   +   +++  S    
Sbjct: 383 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL-GIAPTMKSHMLLLSAYSKARD 441

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V++ EA+  EM E G EP+ FVL S++  YG+  +   + + L  +     T D      
Sbjct: 442 VTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNI 501

Query: 338 LLNV 341
           L+N+
Sbjct: 502 LINI 505



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 119/253 (47%), Gaps = 1/253 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G  E A  ++++ + +    D   ++ L++ Y  AG   G   ++  M+ +G +P+ 
Sbjct: 332 AREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDR 391

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN ++D  GRA      + +++EM   G++P   ++  LL AY +AR      ++ +E
Sbjct: 392 ASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKE 451

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G++    + N++L +   +G   +  +I  +M++   C  D  T++ +I I    G
Sbjct: 452 MSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGP-CTADISTYNILINIYGKAG 510

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +   E +F E+ E  F P++   TS I  Y + +     +     + + G  PD     
Sbjct: 511 FLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAK 570

Query: 337 CLLNVMTQTPKEE 349
            LL+  +   + E
Sbjct: 571 VLLSACSSEEQVE 583



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 40/273 (14%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTA--------------------------------- 134
           LY +    ++    + ++ LIK Y  A                                 
Sbjct: 199 LYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIE 258

Query: 135 ------GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
                 GN +  ++V++ MK    KP   TYN +++  G+A + +    +Y EM  +   
Sbjct: 259 GLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCK 318

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           PN  TY +L+ A+ R    E    ++ +++E G++  V +YN L+   +  GY   A EI
Sbjct: 319 PNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEI 378

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           F  M+    C+PD  +++ M+      G  S+AEA+F EM   G  P +     L+  Y 
Sbjct: 379 FSLMQHM-GCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYS 437

Query: 309 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           KA+        +  + E G+ PD      +LN+
Sbjct: 438 KARDVTKCEAIVKEMSENGVEPDTFVLNSMLNL 470



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 2/233 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG    A  ++   ++     D  +++ ++  YG AG       V+EEMK +G+ P M
Sbjct: 367 SRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTM 426

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    +A+   + + I KEM++NG+ P+     S+L  YGR         +  E
Sbjct: 427 KSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE 486

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+       ++ YN L+ +    G+ +   E+F ++K  +N +PD  T++S I   S + 
Sbjct: 487 MENGPCTADISTYNILINIYGKAGFLERIEELFVELK-EKNFRPDVVTWTSRIGAYSRKK 545

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
              +   +F EM+++G  P+      L+      ++ + V   L  + + G+T
Sbjct: 546 LYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHK-GVT 597



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 38/217 (17%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P++I +N L+D  G+  +  + +++Y ++ ++   P  +TYA L++AY  A   E    
Sbjct: 174 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 233

Query: 213 VYREMKEKGMQ---LSVTLYNTLL-AMCADVGYTDEAFEIFEDMK--------------- 253
           V  EM+   +    + VT+YN  +  +    G T+EA ++F+ MK               
Sbjct: 234 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI 293

Query: 254 -------------------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                               S  C+P+  T+++++   +  G   +AE +F ++ E G E
Sbjct: 294 NLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLE 353

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           P+++V  +L++ Y +A          + +  +G  PD
Sbjct: 354 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPD 390


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 17/301 (5%)

Query: 45  SVSLQETQSSNP------TKHSQNPQYPHGKTGSSPKS----YIWVNPKSPR-ASKLKEK 93
           S+S +ET  +N         H +NP +    T S   S    +   +P SP   S + EK
Sbjct: 53  SLSFEETTLANKFHSLIKDHHRRNPNFSLPNTPSHSLSLDFSHFSTSPVSPSLVSHVIEK 112

Query: 94  SYDTRAG-NVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 151
               R G     A   ++ A +   +   P  ++ +I L G   NFD    V + MKA  
Sbjct: 113 CAAVRHGIPFFQALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARN 172

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           V+ ++ T++ L+    RA    +    +  M D    P+   ++ L+    R R   +  
Sbjct: 173 VEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQ 232

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-T 270
           S +  +K+K  +  V +Y  L+      G   EA  +F +MK +  C P+ +T++ +I  
Sbjct: 233 SFFDSLKDK-FEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVA-GCMPNVYTYTIVIDA 290

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +C C G+++ A  +F EML+ G EPN     +L++ + KA RT+ V++  N++  +G  P
Sbjct: 291 LCRC-GQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPP 349

Query: 331 D 331
           D
Sbjct: 350 D 350



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 3/218 (1%)

Query: 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           +K+  D   ++ L++ +  AGN      V+ EMK  G  PN+ TY  ++D + R  +  +
Sbjct: 240 DKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITR 299

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL- 233
              ++ EM D G  PN  T+ +LLR + +A   E  L VY +MK  G       YN L+ 
Sbjct: 300 AHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIE 359

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
           + C D G  DEA ++   M   + C P++ TF+ +    +    V+ A  ++ +M E   
Sbjct: 360 SHCKD-GNLDEALKVLNSM-VKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKC 417

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + N      L++ +   + TD V++    + E  + P+
Sbjct: 418 KANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPN 455



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 2/230 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG    A   ++R  +   + D  AFS LI +           + ++ +K    +P++
Sbjct: 188 VRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKD-KFEPDV 246

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I Y NL+    RA    + + ++ EM   G  PN  TY  ++ A  R         V+ E
Sbjct: 247 IVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAE 306

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G + +   +N LL +    G T++  +++  MK    C PD+ T++ +I      G
Sbjct: 307 MLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRM-GCPPDTVTYNFLIESHCKDG 365

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            + EA  + N M++ G  PN      L     K +  +   R   ++ EL
Sbjct: 366 NLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKEL 415



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 89/197 (45%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG  E    +Y++ +      D   ++ LI+ +   GN D  L V   M   G  PN 
Sbjct: 327 VKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNA 386

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T+N L  ++ + +       +Y +M +     N  TY  L+R +   +  +  L + +E
Sbjct: 387 STFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKE 446

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E  ++ +V  Y  L+AM   +G+ + A++ F +M   +  +P    +  ++      G
Sbjct: 447 MDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAG 506

Query: 277 KVSEAEAMFNEMLEAGF 293
           ++ + E +   M++ GF
Sbjct: 507 QLKKHEELVAVMVDRGF 523



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 112/248 (45%), Gaps = 25/248 (10%)

Query: 159 YNNLLDTMGRAKR---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           YN ++D  G+ +     WQV  +   M    +  +  T++ L+R Y RA    + +  + 
Sbjct: 145 YNEMIDLAGKVRNFDLGWQVIDL---MKARNVEISIETFSILIRRYVRAGLASEAVHAFN 201

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M++   +     ++ L+++        EA   F+ +K  +  +PD   +++++      
Sbjct: 202 RMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLK--DKFEPDVIVYTNLVRGWCRA 259

Query: 276 GKVSEAEAMFNEMLEAGFEPNLF----VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G + EAE +F EM  AG  PN++    V+ +L +C G+  R  DV      + ++G  P+
Sbjct: 260 GNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRC-GQITRAHDV---FAEMLDVGCEPN 315

Query: 332 DRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG-----YVVKLLLEEQDIEGDFKKEAT 386
                 LL V  +  + E  K+++ V     ++G          L+E    +G+   EA 
Sbjct: 316 SITFNNLLRVHVKAGRTE--KVLQ-VYNQMKRMGCPPDTVTYNFLIESHCKDGNL-DEAL 371

Query: 387 ELFNSISK 394
           ++ NS+ K
Sbjct: 372 KVLNSMVK 379


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 5/218 (2%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           + ++  M   GV PN +TYN L++ +           ++  M  +G  PN ++Y  L+R 
Sbjct: 385 IGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRG 444

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           Y      E  +S+   M +     ++  YN ++    D G TD A  + E MK++  CQP
Sbjct: 445 YCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKAN-GCQP 503

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D W+++ +I+      K+  A  MFNEM++ G  PN    T+LI  Y K ++ D   R L
Sbjct: 504 DEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARML 563

Query: 321 NRLPELGITPDDRFCGCLLNVMTQ----TPKEELGKLV 354
            R+   G  P+ +    L++ +T+    +  EEL K++
Sbjct: 564 ERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM 601



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 1/209 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +IK Y  +G+ D  + V E MKA G +P+  +Y  L+    +  +      ++ EM 
Sbjct: 473 YNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMM 532

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D GL PN  TY +L+  Y +    +    +   MK  G + +V  YN L+          
Sbjct: 533 DRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFS 592

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E+ + M   E   PD  T+S++I      G +  A  MFN+M++ G  PNL   +SL
Sbjct: 593 GAEELCKVML-EEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSL 651

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDD 332
           IQ  G+  R ++     + L + G+ PD+
Sbjct: 652 IQALGQEGRVEEAEEMFSELKKQGLIPDE 680



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           ++ Y ++   G++PN++ YN++++ + +       ++I  ++  +G+ P+  TY S++  
Sbjct: 213 MDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILG 272

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           Y R R  +    ++  M E+G + +   Y+TL+    + G  +EA +   +M +     P
Sbjct: 273 YCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEM-TRHGVLP 331

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
              TF++ I      G++ +A  +F +M + G +PN++  TSLI      QR   +   L
Sbjct: 332 TVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLIS----GQRVSRMAIGL 387

Query: 321 -NRLPELGITPDDRFCGCLLNVMTQ 344
            +R+   G+ P+      L+NV+ +
Sbjct: 388 FHRMSRDGVVPNTVTYNALMNVLME 412



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   +E+A G+++   +     +   ++ LI  Y      D    + E MK  G +PN+ 
Sbjct: 517 KISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQ 576

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + +       + + K M +  +SP+  TY++++            L ++ +M
Sbjct: 577 TYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKM 636

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G   ++  Y++L+      G  +EA E+F ++K  +   PD  T+  MI +C   GK
Sbjct: 637 VKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELK-KQGLIPDEVTYVKMIEVCVMSGK 695

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           V  A     EM+ AG +P L     LI+
Sbjct: 696 VDRAFDFLGEMINAGCQPTLQTYDVLIK 723



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 99/216 (45%), Gaps = 8/216 (3%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++++I      GN     ++  ++   G+KP+  TY +++    R +      
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAF 283

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I+  M + G  PN  TY++L+     +    + L    EM   G+  +V  +   +   
Sbjct: 284 EIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVAL 343

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-AEAMFNEMLEAGFEP 295
            D+G  ++A++IF DMK  + C+P+ +T++S+I+      +VS  A  +F+ M   G  P
Sbjct: 344 CDMGRIEDAWKIFIDMK-KKGCKPNVYTYTSLIS----GQRVSRMAIGLFHRMSRDGVVP 398

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           N     +L+    +    D  +   N + + G  P+
Sbjct: 399 NTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPN 434



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 33/265 (12%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV  A  + ++      + D   ++++I  Y    + D    ++  M   G +PN  TY
Sbjct: 242 GNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATY 301

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L++ +  + R  +      EMT +G+ P  +T+ + + A       ED   ++ +MK+
Sbjct: 302 STLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKK 361

Query: 220 KGMQLSVTLYNTLLA--------------MCAD------VGY------------TDEAFE 247
           KG + +V  Y +L++              M  D      V Y             D A  
Sbjct: 362 KGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALI 421

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           +F +M     C P++ +++ +I      G   +A +M   ML+    P L     +I+ Y
Sbjct: 422 VF-NMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGY 480

Query: 308 GKAQRTDDVVRALNRLPELGITPDD 332
             +  TD  +R L  +   G  PD+
Sbjct: 481 CDSGDTDVAIRVLELMKANGCQPDE 505



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 1/232 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G+ ++A  + +  +    + D  +++ LI  +      +    ++ EM   G+ PN +T
Sbjct: 483 SGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVT 542

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    + ++      + + M  +G  PN  TY  L+    +         + + M 
Sbjct: 543 YTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVML 602

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E+ +   V  Y+T++    + G    A E+F  M     C P+  T+SS+I      G+V
Sbjct: 603 EEKISPDVVTYSTVINGLCNNGAIPLALEMFNKM-VKHGCLPNLHTYSSLIQALGQEGRV 661

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            EAE MF+E+ + G  P+      +I+    + + D     L  +   G  P
Sbjct: 662 EEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQP 713



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 11/210 (5%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
           +IK           LN  +     G K  + TY  LL  + +      V   Y ++   G
Sbjct: 164 MIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREG 223

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT---- 242
           L PN   Y S++ A  +     D  S+  ++ + GM+     Y +++     +GY     
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMI-----LGYCRNRD 278

Query: 243 -DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D AFEIF  M   E C+P++ T+S++I      G+V+EA    +EM   G  P +   T
Sbjct: 279 LDSAFEIFNRM-DEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFT 337

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + I       R +D  +    + + G  P+
Sbjct: 338 APIVALCDMGRIEDAWKIFIDMKKKGCKPN 367



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ LL  + R+ R ++   +Y+ M      PN +TY   L +  RA   +  + V++ M 
Sbjct: 775 YDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMS 834

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTF 265
           ++  +L +T Y  L+     +    EA  +FE M S   N     WT 
Sbjct: 835 DQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTI 882


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 2/247 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ LI     AG  +  L ++ +M      P + TY  L+  +  + R  +   ++ EM
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            + G  PN +TY  L+    +    ++   +  EM EKG+  SV  YN L+      G  
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D+AFEI  D+  S +C P++ T++ +I     + KV +A A+ N+MLE    P+L    S
Sbjct: 386 DDAFEIL-DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361
           LI    K    +   R L+ + E G+ PD       ++ + +  + EE G L + V+   
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 362 SKLGYVV 368
            K   V+
Sbjct: 505 VKANEVI 511



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 1/188 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           VY E+    + PN+ T+N +++   +     + +    ++   GL P+  TY SL+  + 
Sbjct: 181 VYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHC 240

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           R +  ++   V+  M +KG Q +   Y  L+    + G  +EA ++F DM + +NC P  
Sbjct: 241 RNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADM-TEDNCCPTV 299

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++ +I   S  G+  EA  +FNEM E G EPN+   T LI    K  + D+  + L+ 
Sbjct: 300 RTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSE 359

Query: 323 LPELGITP 330
           + E G+ P
Sbjct: 360 MSEKGLIP 367



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 121/287 (42%), Gaps = 13/287 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +  ++E A+ L           D   +S  I      G  +    +++ +KA GVK N +
Sbjct: 451 KVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEV 510

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D   +  +     ++ + M ++   PN  TY  L+    + +  ++  S+  +M
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKM 570

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++ +V  Y  L+      G  D A ++F  M  S   QPD  T+++ +     +G 
Sbjct: 571 LTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHM-VSLGYQPDVCTYTAFLHAYFSQGM 629

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + E + +  +M E G  P+L   T LI  Y +   T      L  + + G  P       
Sbjct: 630 LEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSI 689

Query: 338 LL------NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 378
           L+      N M +T + E+G     ++  ++ L Y + L L E+ +E
Sbjct: 690 LIKNLSHENRMKET-RSEIG-----IDSVSNTLEYEIALKLFEKMVE 730



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 7/233 (3%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  A  L ++    K       +++LI       + +    +   M   G+ P+  TY+ 
Sbjct: 420 VHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            +DT+ +  R  +  T++  +   G+  N   Y +L+  Y +    +   S+   M    
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
              +   YN L+          EA  +   M +    +P   T++ +I      G    A
Sbjct: 540 CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM-GVKPTVVTYTILIGEMLKDGAFDHA 598

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPD 331
             +FN M+  G++P++   T+ +  Y   G  +  DDV+  +N   E GI PD
Sbjct: 599 LKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN---EEGILPD 648



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 19/230 (8%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT-- 177
           D   ++ LI  Y   G      +  + M   G KP++   + L+  +    R  + ++  
Sbjct: 648 DLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEI 707

Query: 178 ----------------IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
                           ++++M ++G + + + Y +L+  + +    E+   +   MKE+G
Sbjct: 708 GIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERG 767

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           M  S  +YN+LL  C  +G   EA  + + M  +    P   ++  ++      G   +A
Sbjct: 768 MSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVEN-GLLPLLESYKLLVCGLYIEGSNEKA 826

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +A+F+ +L  G+  +      LI    K    D+    ++ + E G  P+
Sbjct: 827 KAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPN 876


>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
          Length = 630

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 144/321 (44%), Gaps = 23/321 (7%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G VE A+ +      +        FS +I  +  +G  D  L V+E M A  VKPN+
Sbjct: 312 VKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPNV 371

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y+ ++D   R+ R  + + +++EM D    PN  TY+S++R Y         LS + E
Sbjct: 372 VLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEE 431

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G   +   Y+ L++   DVG   +A  ++++M     C PD+  ++SM+      G
Sbjct: 432 MIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMI-GRGCAPDTIAYTSMMKGLCMSG 490

Query: 277 KVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA---LNRLPELGITPDD 332
            V     +FN+ML  G  +P++     L+       RT+D+ RA   LN++ +    PD 
Sbjct: 491 MVDGGLRLFNDMLAKGDAKPDVISYNVLLDAL---IRTNDLPRAMDLLNQMLDQMCDPDT 547

Query: 333 RFCGCLL---NVMTQTPKEELGKLVE--CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 387
             C   L    V+    +E L  LV   C        G VV ++L +  +      EA  
Sbjct: 548 ITCNIFLREFGVLEGKGREFLEGLVMRLCYRDRYRAAGDVVMVMLAKYIV-----PEAGI 602

Query: 388 LFNSI-----SKDVKKAYCNC 403
            +  +     +K V+K   NC
Sbjct: 603 WYTIVRGVCQTKRVQKVVDNC 623



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 108/232 (46%), Gaps = 2/232 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG VE A  L      +   +   AF+ ++K    AG+ +G + ++  M+  G     +T
Sbjct: 210 AGCVEEAVALVHEMVVDG-VVSAEAFNPVLKAMLRAGDVNGAVKLFRFMQLKGCTLTAVT 268

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN LL  +           I + M + G+ P   TY +++    +    ED   V +EM 
Sbjct: 269 YNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMG 328

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            +G+  S  +++ ++      G  D A  ++E M ++   +P+   +S+MI   +  G++
Sbjct: 329 GQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAAR-VKPNVVLYSAMIDGFARSGRM 387

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +EAE +F EM++A   PN+   +S+++ Y     +   +     + ++G  P
Sbjct: 388 TEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVP 439


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 159/331 (48%), Gaps = 19/331 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  L+ + R      +   +++L+     AG  D  + + +EM   G+ PN++
Sbjct: 316 KEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 375

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D + +  +      +   M   G+  N   Y +L+  +   +  E  L +  EM
Sbjct: 376 TYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEM 435

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICSCR 275
           K KGM+L V+LY TL+     V   DEA  +   M   ++C  +P++  +++++      
Sbjct: 436 KNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKM---DDCGLRPNTVIYTTIMDAFFKA 492

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           GK SEA A+ +++ ++G +PN+    +LI    KA    + +   +++ ELG+ P+ +  
Sbjct: 493 GKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVY 552

Query: 336 GCLLNVMTQTPKEELGKLV----ECVEKSNS--KLGY--VVKLLLEEQDIEGDFKKEATE 387
             L++   +     L K V    E V+K  S  K+ Y  ++   +++ D++G F  +A  
Sbjct: 553 TTLIDGFCKIG--SLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKM 610

Query: 388 LFNSISKDVKKAYC-NCLIDLCVNLNLLENA 417
           +   +  D+   YC  C I    N+N+++ A
Sbjct: 611 IETGLQLDL---YCYTCFISGFCNMNMMQEA 638



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCL--NVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           AR  + R+ PN  +    L   A N  G L   ++E + A    PN+ T+N ++D + + 
Sbjct: 157 ARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLPA----PNVFTFNIVIDFLCKQ 212

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               + + ++  M   G SP+  TY SL+  YG+    E+   +  EM++ G    V  Y
Sbjct: 213 GELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTY 272

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N L+   +  G+ ++A+  F +MK       +  T S+ +      G V EA  +F +M 
Sbjct: 273 NALINCFSKFGWIEKAYSYFGEMKRL-GVMANVVTLSTFVDAFCKEGLVREAMKLFAQMR 331

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G  PN F  TSL+    KA R DD +  L+ +   G+ P+
Sbjct: 332 VRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPN 373



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 8/208 (3%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+   +I      G       ++  MKA+G  P+++TYN+L+D  G+     +V+ +
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELL 256

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA 237
             EM  +G + +  TY +L+  + +  + E   S + EMK  G+  +V   +T + A C 
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCK 316

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           + G   EA ++F  M+      P+ +T++S++      G++ +A  + +EM+  G  PN+
Sbjct: 317 E-GLVREAMKLFAQMR-VRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNV 374

Query: 298 FVLTSLIQCY---GKAQRTDDVVRALNR 322
              T ++      GK    DDV+  + R
Sbjct: 375 VTYTVMVDGLCKEGKVAVADDVLSLMER 402



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 111/239 (46%), Gaps = 1/239 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N E A  L +  +N+   +D + + TLI         D   ++  +M   G++PN + Y 
Sbjct: 424 NSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYT 483

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D   +A +  +   +  ++ D+GL PN  TY +L+    +A    + +S + +M+E 
Sbjct: 484 TIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMREL 543

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+  +V +Y TL+     +G   +A  +  +M   +    D   ++S+I     +G +  
Sbjct: 544 GLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEM-VDKGMSLDKVVYTSLIDGHMKQGDLQG 602

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           A A+  +M+E G + +L+  T  I  +       +    L+ +   GITPD     CL+
Sbjct: 603 AFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLI 661



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 155/350 (44%), Gaps = 19/350 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  L+ R +      D   +++LI  YG  G  +    +  EM+  G   +++
Sbjct: 211 KQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVV 270

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   +     +  + + EM   G+  N  T ++ + A+ +     + + ++ +M
Sbjct: 271 TYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQM 330

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +GM  +   Y +L+      G  D+A  + ++M   +   P+  T++ M+      GK
Sbjct: 331 RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM-VHQGLVPNVVTYTVMVDGLCKEGK 389

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V+ A+ + + M  AG + N  + T+LI  +   + ++  +  LN +   G+  D    G 
Sbjct: 390 VAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGT 449

Query: 338 LLNVMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           L+  + +  K +     L K+ +C  + N+    V+   + +   +   + EA  L + I
Sbjct: 450 LIWGLCKVQKLDEAKSLLHKMDDCGLRPNT----VIYTTIMDAFFKAGKESEAVALLHKI 505

Query: 393 SKDVKK----AYCNCLIDLCVNLNLLENAC---KLLELGL--TLEVYTDI 433
                +     YC  +  LC   ++ E      K+ ELGL   ++VYT +
Sbjct: 506 PDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTL 555



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 1/191 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  L  +  +   + +   +  LI     AG+    ++ +++M+ +G+ PN+ 
Sbjct: 491 KAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQ 550

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D   +     +   +  EM D G+S +   Y SL+  + +    +   ++  +M
Sbjct: 551 VYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKM 610

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+QL +  Y   ++   ++    EA  +  +M  +    PD   ++ +I      G 
Sbjct: 611 IETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGT-GITPDKTAYNCLIRKYQKLGN 669

Query: 278 VSEAEAMFNEM 288
           + EA ++ NEM
Sbjct: 670 MEEASSLQNEM 680



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +AG++  A   +D+ R  +  +DPN   ++TLI  +   G+    +++  EM   G+  +
Sbjct: 526 KAGSIYEAISHFDKMR--ELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLD 583

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            + Y +L+D   +         +  +M + GL  +   Y   +  +      ++   V  
Sbjct: 584 KVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLS 643

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
           EM   G+    T YN L+     +G  +EA  +  +M+S
Sbjct: 644 EMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMES 682


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           +R G +  AFG++   + EK  + PNAF+  +LI      GN D    + EEM   G+ P
Sbjct: 611 SRNGKMHEAFGIFSELQ-EKGLL-PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINP 668

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++TYN L+D + +A    + K ++ ++   GL+PN  TYA+++  Y +++       + 
Sbjct: 669 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 728

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM  +G+     +YN +L  C      ++A ++F++M   E     + +F+++I     
Sbjct: 729 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM--LEKGFASTVSFNTLIEGYCK 786

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            GK+ EA  +  EM+E  F PN    TSLI    KA    +  R    + E  + P
Sbjct: 787 SGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMP 842



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 3/215 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PNA  ++TL+  +   G  +    + E M+  G+ P++  YN+L+    +AKR  + +
Sbjct: 456 LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEAR 515

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           T   EM +  L PN +TY + +  Y +A   E     + EM   G+  +V +Y  L+   
Sbjct: 516 TYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGH 575

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   EAF +F  + S    Q D  T+S +I   S  GK+ EA  +F+E+ E G  PN
Sbjct: 576 CKEGNVTEAFSVFRFILSRRVLQ-DVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPN 634

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            F   SLI    K    D   + L  +   GI PD
Sbjct: 635 AFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPD 669



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 145/344 (42%), Gaps = 10/344 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  +      +    D   +S LI+ +    N      + +EMK   + P ++
Sbjct: 367 KAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 426

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ + R         I +EM  NGL PN   Y +L+ A+ +    E++  +   M
Sbjct: 427 TYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 486

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G+   V  YN+L+         +EA     +M      +P++ T+ + I   S  G+
Sbjct: 487 REQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEM-LERRLRPNAHTYGAFIDGYSKAGE 545

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A+  FNEML  G  PN+ + T+LI+ + K     +       +    +  D +    
Sbjct: 546 MEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSV 605

Query: 338 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           L++ +++  K  E  G   E  EK      +    L+     +G+  K +  L     K 
Sbjct: 606 LIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKG 665

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPT 439
           +         D+     L++  CK  E+     ++ DI+ R  T
Sbjct: 666 INP-------DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT 702



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 114/232 (49%), Gaps = 1/232 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           +P  ++ LI  +   G+ +    + +EM A G++ N+I +N LL+ + +A +  +   I 
Sbjct: 319 EPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIM 378

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM + G+ P+  TY+ L+  + R +       +  EMK++ +  +V  Y+ ++      
Sbjct: 379 QEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRC 438

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G       I  +M  +   +P++  +++++T  +  G+V E+  +   M E G  P++F 
Sbjct: 439 GNLQGTNAILREMVMN-GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFC 497

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
             SLI  + KA+R ++    L  + E  + P+    G  ++  ++  + E+ 
Sbjct: 498 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIA 549



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 121/312 (38%), Gaps = 75/312 (24%)

Query: 96  DTRAGN-VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           D   GN VE+ + ++D     K   D   ++ +I  +   GN      V  EM   G  P
Sbjct: 189 DLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSP 248

Query: 155 NMITYNNLLDTMGRA-----------------------------------KRPWQVKTIY 179
           N++TYN ++  + RA                                   KR  + K + 
Sbjct: 249 NLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLML 308

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM D GL P   TY +L+  + R    E    +  EM   G++ ++ ++NTLL      
Sbjct: 309 LEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKA 368

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT----------------------------- 270
           G  ++A EI ++M   +  +PDS T+S +I                              
Sbjct: 369 GKMEKALEIMQEMM-EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 427

Query: 271 -------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
                  +C C G +    A+  EM+  G +PN  V T+L+  + K  R ++    L R+
Sbjct: 428 YSVIINGLCRC-GNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 486

Query: 324 PELGITPDDRFC 335
            E GI P D FC
Sbjct: 487 REQGILP-DVFC 497



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 106/234 (45%), Gaps = 3/234 (1%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R+ PNA  +   I  Y  AG  +     + EM + GV PN+  Y  L++   +     + 
Sbjct: 525 RLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEA 584

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
            ++++ +    +  +  TY+ L+    R     +   ++ E++EKG+  +   YN+L++ 
Sbjct: 585 FSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 644

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  D+A ++ E+M   +   PD  T++ +I      G++  A+ +F+++   G  P
Sbjct: 645 SCKQGNVDKASQLLEEM-CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 703

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           N     +++  Y K++      + L  +   G+ PD      +LN   +  K E
Sbjct: 704 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFE 757



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + P+AF  + ++        F+  L++++EM   G   + +++N L++   ++ +  +  
Sbjct: 736 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEAN 794

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM +    PN  TY SL+    +A    +   ++ EM+E+ +  +   Y +LL   
Sbjct: 795 HLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 854

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            ++G   E   +FE+M  ++  +PD  T+  MI      G V EA  + +E+L  G   +
Sbjct: 855 HNIGNMSEVSALFEEM-VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMS 913

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +    +LIQ   K +   +V++ LN + E G
Sbjct: 914 VAAYDALIQALCKKEEFFEVLKLLNEIGESG 944



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 6/278 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN+  F  L+  Y   G     +NV+   K    +P++++ N+LL  + +  +      +
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M  + + P+  TY +++ A+ +    +D   V  EM EKG   ++  YN ++     
Sbjct: 203 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCR 262

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               DEA E+   M   +   PD +T+  +I       +  EA+ M  EM++ G +P   
Sbjct: 263 ARLLDEAIELKRSM-VDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI 321

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE--LGKLVEC 356
              +LI  + +    +   R  + +   GI  +      LLN + +  K E  L  + E 
Sbjct: 322 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 381

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
           +EK          LL+E     G     A EL + + K
Sbjct: 382 MEKGVEPDSQTYSLLIEGH-CRGQNMARAFELLDEMKK 418



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 59/129 (45%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++L+  Y   GN      ++EEM A G++P+ +TY  ++D   R     +   +  E+ 
Sbjct: 847 YTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL 906

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+  +   Y +L++A  +     + L +  E+ E G +L +   + +       G  D
Sbjct: 907 VKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMD 966

Query: 244 EAFEIFEDM 252
           EA E+   M
Sbjct: 967 EAAEVLRSM 975


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 1/241 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +A  L +  R    + D   ++TLI       N +  + VY +M A   +P++ TYN ++
Sbjct: 252 LAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMI 311

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
              GR     +   ++K++   G  P+  TY SLL A+ R    +    +  +M + G  
Sbjct: 312 SVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFG 371

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
                YNT++ M    G  D AF+++ DMK S    PD+ T++ +I        + EA  
Sbjct: 372 KDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGR-SPDAVTYTVLIDSLGKANMIKEAAE 430

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           + +EML A  +P L   ++LI  Y KA +  +     + +   GI PD      +L+++ 
Sbjct: 431 VMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILL 490

Query: 344 Q 344
           +
Sbjct: 491 R 491



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 122/264 (46%), Gaps = 2/264 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R  N+E A  +Y+     + + D   ++ +I +YG  G       +++++++ G  P+ 
Sbjct: 280 SRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDA 339

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN+LL    R     +VK I ++M   G   +  TY +++  YG+    +    +Y +
Sbjct: 340 VTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSD 399

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G       Y  L+          EA E+  +M ++   +P   TFS++I   +  G
Sbjct: 400 MKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNA-RVKPTLRTFSALICGYAKAG 458

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  EAE  F+ ML +G +P+    + ++    +   +   ++    +      PD     
Sbjct: 459 KRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYE 518

Query: 337 CLLNVMTQTPKEE-LGKLVECVEK 359
            +L V+ +  +EE + K+V+ +E+
Sbjct: 519 VMLRVLGKENREEDVHKVVKDMEE 542



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 111/242 (45%), Gaps = 1/242 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G    A  L+    ++ +  D   +++L+  +   GN D    + E+M  +G   + +
Sbjct: 316 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 375

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++   G+  +      +Y +M  +G SP+  TY  L+ + G+A   ++   V  EM
Sbjct: 376 TYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEM 435

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
               ++ ++  ++ L+   A  G   EA E F+ M  S   +PD   +S M+ I     +
Sbjct: 436 LNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRS-GIKPDHLAYSVMLDILLRFNE 494

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             +A  ++ EM+   F+P+  +   +++  GK  R +DV + +  + EL        C  
Sbjct: 495 SGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSI 554

Query: 338 LL 339
           L+
Sbjct: 555 LV 556



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/485 (18%), Positives = 179/485 (36%), Gaps = 109/485 (22%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A+S ++ +          + +Y+EM     KP+   Y  +L  +G+  R   V  + 
Sbjct: 478 DHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVV 537

Query: 180 KEMTD-NGLSPN-----------WNTYASLLR----------AYGRAR------------ 205
           K+M +  G++             ++  A++LR           YG+AR            
Sbjct: 538 KDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEELF 597

Query: 206 -------------YGEDTLSVYRE-------------MKEKGMQLSVTLYNTLLAMCADV 239
                        +    + ++R              MKE G++ ++   + L+   +  
Sbjct: 598 EGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGS 657

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  +EA ++ +++K  E     +  +SS+I      G  + A     EM + G EP+  +
Sbjct: 658 GQPEEAEKVLDNLKV-EGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRI 716

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
            T  ++    +Q T + +  L  L + G     R       ++T+     + ++  C+E 
Sbjct: 717 WTCFVRAASLSQHTSEAIVLLKALRDTGFDLPIR-------LLTEKSDSLVSEVDNCLE- 768

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 419
              KLG +                E    FN         + N L DL     L   A  
Sbjct: 769 ---KLGPL----------------EDNAAFN---------FVNALEDLLWAFELRATASW 800

Query: 420 LLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLS---------KALE 469
           + +L +   +Y  D+   +   W    + +S G+AL  L +W++ +           +L+
Sbjct: 801 VFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQAKYFYFWQDASLQ 860

Query: 470 SGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSW 529
                P  + + TG    +Y+   L S  ++ L E+ +PF     + G  +    + + W
Sbjct: 861 GYPLSPKSVVLITGTA--EYNMVSLNSTLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMW 918

Query: 530 LESRS 534
           L+  S
Sbjct: 919 LKDSS 923



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 39/181 (21%)

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           SPN    A++L   G+A      + ++    E     +V +YN ++ + A  G   +  E
Sbjct: 160 SPNARMLATILSVLGKANQEALAVEIFAR-AEAASGNTVQVYNAMMGVYARTGRFTKVQE 218

Query: 248 IFEDMKSSENC-------------------------------------QPDSWTFSSMIT 270
           +  D+  S  C                                     QPD  T++++I+
Sbjct: 219 LL-DLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLIS 277

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            CS    + EA  ++N+M+    +P+L+   ++I  YG+   + +  R    L   G  P
Sbjct: 278 ACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLP 337

Query: 331 D 331
           D
Sbjct: 338 D 338



 Score = 42.0 bits (97), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/150 (18%), Positives = 76/150 (50%), Gaps = 4/150 (2%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L++   +++ ++D + +  ++K++  +GN      +   MK  GV+P + T + L+ +  
Sbjct: 596 LFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYS 655

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR--EMKEKGMQLS 225
            + +P + + +   +   GL  +   Y+S++ AY   + G+  +++ +  EMK+ G++  
Sbjct: 656 GSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAY--LKNGDHNVAIQKLMEMKKDGLEPD 713

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
             ++   +   +   +T EA  + + ++ +
Sbjct: 714 HRIWTCFVRAASLSQHTSEAIVLLKALRDT 743


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 2/222 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +AF   IK +  AG     + V+E M+  G    + ++N LL  + +     +   ++  
Sbjct: 2   DAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDR 61

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M D   +P+  +Y +L+ A+  AR   +   V+ EM E G++  V ++NT++        
Sbjct: 62  MRDR-YAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQR 120

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             EA ++FE MK+ +   P+ WT++ +I     RGK+  A   F EM + G +P++   T
Sbjct: 121 RPEAVKMFELMKA-KGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYT 179

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            L+  YG A+R D V   L  + + G  PD R    L+ ++T
Sbjct: 180 CLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLT 221



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 122/256 (47%), Gaps = 5/256 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++DR R +++  D  +++ L+  +  A N      V+ EM   G+KP+++ +N +++ + 
Sbjct: 58  VFDRMR-DRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLL 116

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R +R  +   +++ M   G +PN  TY  L+R + +    +  +  + EM++ G Q  V 
Sbjct: 117 RGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVA 176

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  LL    +    D    + E+M + + C PD  T++++I + + R    +A  ++ +
Sbjct: 177 TYTCLLVGYGNAKRMDRVTALLEEM-TQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKK 235

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLN--VMTQ 344
           M++ G EP +     +++ Y    R   +  A+   +   GI PD       +N  +   
Sbjct: 236 MIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHG 295

Query: 345 TPKEELGKLVECVEKS 360
            P+E    + E ++K 
Sbjct: 296 RPEEACKYIEEMIQKG 311



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 6/198 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ LI+ +   G  D  +  +EEM+ +G +P++ TY  LL   G AKR  +V  +
Sbjct: 138 PNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTAL 197

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--MC 236
            +EMT  G  P+  TY +L++        +D   +Y++M +KG++ ++  YN ++     
Sbjct: 198 LEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFL 257

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
               Y      ++E+M     C PD  +++  I      G+  EA     EM++ G +  
Sbjct: 258 GGRNYM-MGCAVWEEMHRKGIC-PDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTP 315

Query: 297 LFVLTSLIQCYGKAQRTD 314
                     + KA + D
Sbjct: 316 QIDYNKFAADFSKAGKPD 333



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++MA   ++  ++   + D   ++ L+  YG A   D    + EEM   G  P+  
Sbjct: 152 KRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGR 211

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYR 215
           TYN L+  +     P     IYK+M   GL P  +TY  ++++Y  G   Y     +V+ 
Sbjct: 212 TYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGC-AVWE 270

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM--KSSENCQPDSWTFSS 267
           EM  KG+   V  Y   +      G  +EA +  E+M  K  +  Q D   F++
Sbjct: 271 EMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAA 324



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TI 178
           D   ++ LIKL       D    +Y++M   G++P + TYN ++ +     R + +   +
Sbjct: 209 DGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAV 268

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++EM   G+ P+ N+Y   +  + R    E+      EM +KGM+     YN   A  + 
Sbjct: 269 WEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSK 328

Query: 239 VGYTDEAFEIFEDMK 253
            G  D  +E+ + +K
Sbjct: 329 AGKPDILYELAQKVK 343


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 119/223 (53%), Gaps = 8/223 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G +E A  ++D   +    I+PN   + TL+  Y   G  D  L+++ EM   G+KP+ 
Sbjct: 549 VGKMEKALRVFDAMVSAG--IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 606

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I YN ++D +  A R    K  + EMT++G++ N  TY+ +LR   + R  ++ + +++E
Sbjct: 607 ILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKE 666

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++   +++ +   NT++A        +EA ++F  + S     P + T+S MIT     G
Sbjct: 667 LRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI-SRSGLVPCAVTYSIMITNLIKEG 725

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            V EAE MF+ M  AG EP+  +L  +++   +  + +++VRA
Sbjct: 726 LVEEAEDMFSSMQNAGCEPDSRLLNHVVR---ELLKKNEIVRA 765



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 146/310 (47%), Gaps = 24/310 (7%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A++T+I  +   G+ +   ++++EM   G+ P+++TY++++  + +A+   + +   
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 180 KEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++M + G+ P NW TY +L+  Y      ++ + V++EM+ + +   V   NTL+     
Sbjct: 280 RQMVNKGVLPDNW-TYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCK 338

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA ++F+ M + +   PD ++++ M+   + +G + +   +F+ ML  G  P + 
Sbjct: 339 YGKIKEARDVFDTM-AMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVIC 397

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECV 357
               LI+ Y      D  +   N + + G+ P       ++  MT       +GK+ + +
Sbjct: 398 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPH------VVTYMTVIAALCRIGKMDDAM 451

Query: 358 EKSNSKLG-------YVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 410
           EK N  +        Y    L++     G   K A EL + I  +  +      +D+   
Sbjct: 452 EKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLK-AKELISEIMNNGMR------LDIVFF 504

Query: 411 LNLLENACKL 420
            +++ N CKL
Sbjct: 505 GSIINNLCKL 514



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 42/250 (16%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +P+ FS  I L G A    GCL    ++++ M   G+ P + T+N L+          + 
Sbjct: 358 NPDVFSYTIMLNGYATK--GCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKA 415

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--------------- 220
             I+ EM D+G+ P+  TY +++ A  R    +D +  + +M ++               
Sbjct: 416 MIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQG 475

Query: 221 --------------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
                               GM+L +  + +++     +G   +A  IF D+  +    P
Sbjct: 476 FCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHP 534

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D+  ++ ++      GK+ +A  +F+ M+ AG EPN+    +L+  Y K  R D+ +   
Sbjct: 535 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 594

Query: 321 NRLPELGITP 330
             + + GI P
Sbjct: 595 REMLQKGIKP 604



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 15/274 (5%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N   R+D   F ++I      G      N+++    +G+ P+ + YN L+D      +  
Sbjct: 494 NNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKME 553

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++  M   G+ PN   Y +L+  Y +    ++ LS++REM +KG++ S  LYN ++
Sbjct: 554 KALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 613

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
               + G T  A   F +M  S     +  T+S ++          EA  +F E+     
Sbjct: 614 DGLFEAGRTVPAKVKFHEMTES-GIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNV 672

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEELGK 352
           + ++  L ++I    + +R ++       +   G+ P    C    ++M T   KE L +
Sbjct: 673 KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP----CAVTYSIMITNLIKEGLVE 728

Query: 353 LVECV---------EKSNSKLGYVVKLLLEEQDI 377
             E +         E  +  L +VV+ LL++ +I
Sbjct: 729 EAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEI 762



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV-YEEMKAIGVKPN 155
           TRA   E+A   + +      R+D    S L+K +  A   D  L++       +G  P+
Sbjct: 124 TRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPD 183

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSV 213
           + +YN LL ++    +  Q   + + M + G   SP+   Y +++  + +         +
Sbjct: 184 VFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDL 243

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           ++EM ++G+   +  Y++++         D+A E F     ++   PD+WT++++I   S
Sbjct: 244 FKEMVQRGIPPDLVTYSSVVHALCKARAMDKA-EAFLRQMVNKGVLPDNWTYNNLIYGYS 302

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC---YGKAQRTDDV 316
             G+  EA  +F EM      P++  L +L+     YGK +   DV
Sbjct: 303 STGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDV 348



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 7/246 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+V  A  L+          D   +S+++     A   D       +M   GV P+  
Sbjct: 233 KEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNW 292

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVY 214
           TYNNL+       +  +   ++KEM    + P+    NT    L  YG+ +   D   V+
Sbjct: 293 TYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARD---VF 349

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             M  KG    V  Y  +L   A  G   +  ++F D+   +   P   TF+ +I   + 
Sbjct: 350 DTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLF-DLMLGDGIAPVICTFNVLIKAYAN 408

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G + +A  +FNEM + G +P++    ++I    +  + DD +   N++ + G+ PD   
Sbjct: 409 CGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYA 468

Query: 335 CGCLLN 340
             CL+ 
Sbjct: 469 YHCLIQ 474



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/333 (20%), Positives = 140/333 (42%), Gaps = 8/333 (2%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +   G   K+ I  N       K    +Y T      R G ++ A   +++  ++    D
Sbjct: 406 YANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 465

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
             A+  LI+ + T G+      +  E+   G++ +++ + ++++ + +  R    + I+ 
Sbjct: 466 KYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFD 525

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
              + GL P+   Y  L+  Y      E  L V+  M   G++ +V  Y TL+     +G
Sbjct: 526 LTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIG 585

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             DE   +F +M   +  +P +  ++ +I      G+   A+  F+EM E+G   N    
Sbjct: 586 RIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 644

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
           + +++   K +  D+ +     L  + +  D      ++  M QT + EE   L   + +
Sbjct: 645 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISR 704

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           S      V   ++    I+    +EA ++F+S+
Sbjct: 705 SGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSM 737



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 2/183 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P   TY  L+D   RA RP      + ++   GL  +    + LL+ +  A+  ++ L
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 212 SVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMI 269
            +      E G    V  YN LL    + G + +A ++   M +    C PD   ++++I
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVI 228

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G V++A  +F EM++ G  P+L   +S++    KA+  D     L ++   G+ 
Sbjct: 229 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 288

Query: 330 PDD 332
           PD+
Sbjct: 289 PDN 291


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 3/214 (1%)

Query: 120 DPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +P+ FS  T++     +G ++    + E+M      P+++TYN+L+D   +  +  + + 
Sbjct: 229 EPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAER 288

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + ++M     +P   TY +L+  + RA    D   V  +M + G+   +  YN LL    
Sbjct: 289 LLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLC 348

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  +EA E+ E M   ++C PD  T+S ++      GKV +A  +   MLE G +PNL
Sbjct: 349 KAGKLEEAHELLEVM-VEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNL 407

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               ++I  + KA + D+  + L  + E+  TPD
Sbjct: 408 VTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPD 441



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 19/248 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  L +    +    D   +S L+      G  D    + E M   G +PN++
Sbjct: 349 KAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLV 408

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N ++D   +A +  +   + + M +   +P+  TY++L+  Y +A   +D  ++    
Sbjct: 409 TFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL--- 465

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSC-R 275
              G+      Y+++L      G  +EA E+  D+ + + C P S  ++ +I  +C   R
Sbjct: 466 ---GISPDKASYSSMLEGLCSTGKVEEAQEVM-DLMTKQGCPPTSSHYALIIGGLCDVER 521

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD---- 331
           G   EA  M   M E G EPNL+  + LI    K +R +D +  L+ + E G  PD    
Sbjct: 522 G--DEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATY 579

Query: 332 ----DRFC 335
               D FC
Sbjct: 580 TSLIDGFC 587



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 7/251 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G  E A  + ++   +K   D   +++L+  +      D    + E+M      P +IT
Sbjct: 245 SGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVIT 304

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    RA R      + ++M   G+SP+  TY  LL    +A   E+   +   M 
Sbjct: 305 YTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMV 364

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           EK     V  Y+ L+     +G  D+A  + E M     CQP+  TF++MI      GKV
Sbjct: 365 EKDCAPDVVTYSILVNGLCKLGKVDDARLLLE-MMLERGCQPNLVTFNTMIDGFCKAGKV 423

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            E   +   M E    P++   ++LI  Y KA R  D          LGI+PD      +
Sbjct: 424 DEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAI------LGISPDKASYSSM 477

Query: 339 LNVMTQTPKEE 349
           L  +  T K E
Sbjct: 478 LEGLCSTGKVE 488



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+T+I  +  AG  D    V E MK +   P+++TY+ L+D   +A R      I
Sbjct: 405 PNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAI 464

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
                  G+SP+  +Y+S+L         E+   V   M ++G   + + Y  ++    D
Sbjct: 465 L------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCD 518

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           V   DEA ++ + M S   C+P+ +T+S +I  +C  + +V +A  + + MLE G  P++
Sbjct: 519 VERGDEALKMLQVM-SERGCEPNLYTYSILINGLCKTK-RVEDAINVLDVMLEKGCVPDV 576

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              TSLI  + K  + D   +    + + G  PD
Sbjct: 577 ATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPD 610



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 108/247 (43%), Gaps = 11/247 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAGN +M   + +     ++  D    +T++K Y   G+ D  L+ +     +   P  
Sbjct: 35  SRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFR--GKMWCSPTA 92

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  L+  + + +R  +   +  EM      P+   Y  L+    +    +   +V + 
Sbjct: 93  FTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKM 152

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E+     V  Y +L+  C      DEA ++ E MK S    PD+  +++++     + 
Sbjct: 153 MLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKES-GLTPDTVAYNALLNGLCKQN 211

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----- 331
           ++ E   +  EM+EAG EP+ F   +++ C  ++ + ++  + L ++ E    PD     
Sbjct: 212 QLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYN 271

Query: 332 ---DRFC 335
              D FC
Sbjct: 272 SLMDGFC 278



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 8/233 (3%)

Query: 106 FGLYDRARN------EKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G  D ARN      E+  + D   +++LI         D    + E+MK  G+ P+ + 
Sbjct: 140 MGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVA 199

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN LL+ + +  +  +V  + +EM + G  P+  +Y +++     +   E+   +  +M 
Sbjct: 200 YNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMI 259

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           EK     V  YN+L+     V   DEA  + EDM     C P   T++++I   S   ++
Sbjct: 260 EKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDM-VGRRCAPTVITYTTLIGGFSRADRL 318

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++A  +  +M +AG  P+L     L+    KA + ++    L  + E    PD
Sbjct: 319 ADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPD 371



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 12/239 (5%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + +  LI  +  AGN    L +  EM A    P++IT+N +L      K   Q+  + + 
Sbjct: 25  STYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL------KAYCQIGDLDRA 78

Query: 182 MTD-NG---LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++   G    SP   TY  L+    + +  ++   +  EM +K       +YN L+A   
Sbjct: 79  LSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLC 138

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            +G  D A  + + M    +C PD  T++S+I  C     + EA  +  +M E+G  P+ 
Sbjct: 139 KMGKIDAARNVLK-MMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDT 197

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
               +L+    K  + ++V + L  + E G  PD      ++  + ++ K EE GK++E
Sbjct: 198 VAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILE 256



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 44/292 (15%)

Query: 106 FGLYDRA----RNEKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITY 159
            G  DRA    R + W   P AF+  I ++G       D    + +EM      P+   Y
Sbjct: 72  IGDLDRALSHFRGKMW-CSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVY 130

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+  + +  +    + + K M +    P+  TY SL+    +    ++   +  +MKE
Sbjct: 131 NCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKE 190

Query: 220 KGM---------------------QLSVTL--------------YNTLLAMCADVGYTDE 244
            G+                     ++S  L              YNT++A   + G  +E
Sbjct: 191 SGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEE 250

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A +I E M   + C PD  T++S++       K+ EAE +  +M+     P +   T+LI
Sbjct: 251 AGKILEKM-IEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLI 309

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
             + +A R  D  R +  + + GI+PD     CLL+ + +  K EE  +L+E
Sbjct: 310 GGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLE 361



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 8/206 (3%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           KP+  TY  L+    RA     V  I  EM     SP+  T+ ++L+AY +    +  LS
Sbjct: 21  KPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALS 80

Query: 213 VYREMKEKGMQLSVTL--YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
            +R      M  S T   Y  L+         DEA+++ ++M   ++C PD+  ++ +I 
Sbjct: 81  HFR----GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEM-IQKDCHPDAAVYNCLIA 135

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                GK+  A  +   MLE    P++   TSLI    +    D+  + + ++ E G+TP
Sbjct: 136 GLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTP 195

Query: 331 DDRFCGCLLN-VMTQTPKEELGKLVE 355
           D      LLN +  Q   EE+ KL+E
Sbjct: 196 DTVAYNALLNGLCKQNQLEEVSKLLE 221



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 100/234 (42%), Gaps = 7/234 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG V+    + +  +      D   +STLI  Y  A        +      +G+ P+  
Sbjct: 419 KAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAI------LGISPDKA 472

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+++L+ +    +  + + +   MT  G  P  + YA ++        G++ L + + M
Sbjct: 473 SYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVM 532

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E+G + ++  Y+ L+         ++A  +  D+   + C PD  T++S+I       K
Sbjct: 533 SERGCEPNLYTYSILINGLCKTKRVEDAINVL-DVMLEKGCVPDVATYTSLIDGFCKINK 591

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  A   F  M ++G EP+      LI  + ++   +  +  +  + E G  PD
Sbjct: 592 MDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPD 645



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 1/186 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++S++++   + G  +    V + M   G  P    Y  ++  +   +R  +   + 
Sbjct: 470 DKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKML 529

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M++ G  PN  TY+ L+    + +  ED ++V   M EKG    V  Y +L+     +
Sbjct: 530 QVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKI 589

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              D A++ F+ M+ S  C+PD   ++ +I+     G V +A  +   MLE G  P+   
Sbjct: 590 NKMDAAYQCFKTMRDS-GCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAAT 648

Query: 300 LTSLIQ 305
             SL++
Sbjct: 649 YFSLMR 654


>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 426

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   +  N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++KS +N   D+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELKSPDNIPRDT-----AIHILAGAGRIEEATYVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +++   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYANLIEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N   +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVEID 288



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 1/159 (0%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
            LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    +A
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L+ 
Sbjct: 64  ISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLT 122

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 123 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 83/179 (46%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++G  G  D    +++++++ GV+ + + Y  ++    RA      K
Sbjct: 250 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAK 309

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 310 RLLHELKSPDNIPR-DTAIHILAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLF 365

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+F+ M+      PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 366 SKYKKYANLIEVFDKMRGL-GYFPDS---NVIALVLNAYGKLHEFDKANGVYMEMQEVG 420


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 11/281 (3%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E+ F + D+      R+D   F+TL+      G       + E M  +GV+P++I+YN L
Sbjct: 509 ELVFEMLDQG----IRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTL 564

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +D      R  +   +   M   GL PN  TY +LL  Y +AR  +D  S+ REM   G 
Sbjct: 565 VDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGP 624

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
              V  YNT+L      G   EA E++ +M +S   Q D +T++ ++        V EA 
Sbjct: 625 TPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRT-QWDMYTYNIILNGLCKNNCVDEAF 683

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNV 341
            MF  +   G + ++     +I    K  + +D +     +   G+ PD + +C    N+
Sbjct: 684 KMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENL 743

Query: 342 MTQTPKEELGKLVECVEKS----NSK-LGYVVKLLLEEQDI 377
           + +   EELG L   +E++    NS+ L  +V+  L   DI
Sbjct: 744 IKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDI 784



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/380 (19%), Positives = 165/380 (43%), Gaps = 68/380 (17%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFD-------------GC---- 140
           R G +E  F ++       WR++   F+ L+K    A   D             GC    
Sbjct: 207 RMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNV 266

Query: 141 ----------------------LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
                                 L+V  + + +   P++++YN +++   R  +  +   +
Sbjct: 267 VSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNL 326

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M D G+ P+  TY +++    +A+  +   +V+++M +KG++ S   YN L+     
Sbjct: 327 FLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLS 386

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   E   + E+M S+ + +PD + ++ ++      G+ +EA  +F+ ++  G +P+  
Sbjct: 387 TGKWKEVVRLLEEM-STHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAM 445

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           +              D+ V   +++ + G++P+    G L++ + +     LG++ + + 
Sbjct: 446 I--------------DEAVCIFDKMRQQGLSPNVVNYGALIDALCK-----LGRVDDAIL 486

Query: 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVK---KAYCNCLIDLCVNLNLLE 415
           K N  +  V  L   E+     ++K    +F  + + ++     +   + DLC    ++E
Sbjct: 487 KFNQMINEVYGLCTVEK-----WEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVME 541

Query: 416 NACKLLELGLTLEVYTDIQS 435
            A +L+EL L + V  D+ S
Sbjct: 542 -AQRLIELMLRVGVRPDVIS 560



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 123/294 (41%), Gaps = 45/294 (15%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+ A  ++ +  ++  +     ++ LI  Y + G +   + + EEM    ++P+  
Sbjct: 351 KAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCF 410

Query: 158 TYNNLLDTMGRAKRPWQVKT---------------------IYKEMTDNGLSPNWNTYAS 196
            Y  LLD + +  R  + +                      I+ +M   GLSPN   Y +
Sbjct: 411 IYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGA 470

Query: 197 LLRA---YGRAR-------------YG-------EDTLSVYREMKEKGMQLSVTLYNTLL 233
           L+ A    GR               YG       E    +  EM ++G++L V ++NTL+
Sbjct: 471 LIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLM 530

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G   EA  + E M      +PD  ++++++      G+  EA  + + M+  G 
Sbjct: 531 CDLCREGRVMEAQRLIELMLRV-GVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGL 589

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           +PN F   +L+  Y KA+R DD    L  +   G TPD      +L+ + QT +
Sbjct: 590 KPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGR 643



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 3/243 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V  A  L +       R D  +++TL+  +   G  D    + + M +IG+KPN  
Sbjct: 535 REGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEF 594

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDTLSVYRE 216
           TYN LL    +A+R     ++ +EM  NG +P+  TY ++L   +   R+ E    +Y  
Sbjct: 595 TYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAK-ELYLN 653

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M     Q  +  YN +L         DEAF++F+ +  S+  Q    TF+ MI      G
Sbjct: 654 MINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSL-CSKGLQLHIITFNIMIGALLKGG 712

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  +A  +F  +   G  P++     + +   K    +++    + + E G  P+ R   
Sbjct: 713 KKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLN 772

Query: 337 CLL 339
            L+
Sbjct: 773 ALV 775



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 11/143 (7%)

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE------IFEDM 252
           RA   +    D L ++  +       SVT +N LL   +         E      +F+ M
Sbjct: 124 RAQSGSLASHDALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRM 183

Query: 253 --KSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
             + S+   PD  T+S +I  C CR G++    A+F  +L+ G+  N  V   L++    
Sbjct: 184 VRECSDKVAPDRCTYSILIG-CFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCD 242

Query: 310 AQRTDDVVRALN-RLPELGITPD 331
           A+R D+    L  R+PE G TP+
Sbjct: 243 AKRLDEATNILLWRMPEFGCTPN 265


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 137/293 (46%), Gaps = 4/293 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  AF L+    ++    D   +S LI  +   G     ++++ +M    +KP++ T+N 
Sbjct: 241 VNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNI 300

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L++   +  +  + KT++  M   G+ PN+ TY SL+  Y   +      S++  M + G
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +   +  Y+ ++     +   DEA  +F++M   +N  PD  T+SS+I   S  G++S A
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDVVTYSSLIDGLSKSGRISYA 419

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             + ++M + G  PN+    S++    K  + D  +  L +  + G  PD      L+  
Sbjct: 420 LQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKG 479

Query: 342 MTQTPKEELGKLV--ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           + Q+ K E  + V  + + K  +   Y   ++++   +EG F  EA  L + +
Sbjct: 480 LCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLF-NEALALLSKM 531



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 117/233 (50%), Gaps = 3/233 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ AF  +D+     +  D  ++ TLI      G     L++ + +    V+PN++ Y
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMY 228

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++D+M + K   +   ++ EM   G+SP+  TY++L+  +      +D + ++ +M  
Sbjct: 229 NTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMIL 288

Query: 220 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + ++  V  +N L+ A C D G   E   +F DM   +  +P+  T++S++       +V
Sbjct: 289 ENIKPDVYTFNILVNAFCKD-GKMKEGKTVF-DMMMKQGIKPNFVTYNSLMDGYCLVKEV 346

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++A+++FN M + G  P++   + +I  + K ++ D+ +     +    I PD
Sbjct: 347 NKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPD 399



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 112/250 (44%), Gaps = 1/250 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  AF ++ +     +  D   F+TL K     G        ++++ A+G   + I
Sbjct: 132 QLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQI 191

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L+  + +         + + +  N + PN   Y +++ +  + +   +   ++ EM
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG+   V  Y+ L++    +G   +A ++F  M   EN +PD +TF+ ++      GK
Sbjct: 252 VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKM-ILENIKPDVYTFNILVNAFCKDGK 310

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + E + +F+ M++ G +PN     SL+  Y   +  +      N + + G+ PD +    
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 338 LLNVMTQTPK 347
           ++N   +  K
Sbjct: 371 MINGFCKIKK 380



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 113/232 (48%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  L+++   E  + D   F+ L+  +   G       V++ M   G+KPN +TY
Sbjct: 274 GKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTY 333

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N+L+D     K   + K+I+  M   G++P+  +Y+ ++  + + +  ++ +++++EM  
Sbjct: 334 NSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR 393

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           K +   V  Y++L+   +  G    A ++ + M       P+  T++S++       +V 
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM-HDRGVPPNICTYNSILDALCKTHQVD 452

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +A A+  +  + GF+P++   + LI+   ++ + +D  +    L   G   D
Sbjct: 453 KAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLD 504



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 93/177 (52%), Gaps = 1/177 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++S +I  +     FD  +N+++EM    + P+++TY++L+D + ++ R      + 
Sbjct: 364 DIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLV 423

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M D G+ PN  TY S+L A  +    +  +++  + K+KG Q  ++ Y+ L+      
Sbjct: 424 DQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQS 483

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           G  ++A ++FED+   +    D + ++ MI      G  +EA A+ ++M + G  P+
Sbjct: 484 GKLEDARKVFEDL-LVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPD 539



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 5/204 (2%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+     +    D   +S+LI     +G     L + ++M   GV PN+ TYN++LD
Sbjct: 384 AMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILD 443

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +  +  +   +  +  D G  P+ +TY+ L++   ++   ED   V+ ++  KG  L
Sbjct: 444 ALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNL 503

Query: 225 SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
            V  Y  ++   C + G  +EA  +   M+ +  C PD+ T+  +I     + +   AE 
Sbjct: 504 DVYAYTIMIQGFCVE-GLFNEALALLSKMEDN-GCIPDAKTYEIIILSLFKKDENDMAEK 561

Query: 284 MFNEMLEAGFEPNLF--VLTSLIQ 305
           +  EM+  G   N +   LT L Q
Sbjct: 562 LLREMIARGLPLNFYDLYLTRLAQ 585



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/266 (18%), Positives = 115/266 (43%), Gaps = 36/266 (13%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           +V+ A  L++R            F+ ++     + ++   L + ++M+  G+KPN++  N
Sbjct: 65  DVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCN 124

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-------------------- 200
            L++   +        +++ ++   G  P+  T+ +L +                     
Sbjct: 125 ILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVAL 184

Query: 201 -------------YGRARYGED--TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
                        +G  + GE    L + + +    +Q +V +YNT++     V   +EA
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           F++F +M  S+   PD  T+S++I+     GK+ +A  +FN+M+    +P+++    L+ 
Sbjct: 245 FDLFSEM-VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVN 303

Query: 306 CYGKAQRTDDVVRALNRLPELGITPD 331
            + K  +  +     + + + GI P+
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPN 329


>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 110/212 (51%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D +A+ ++++    AG     L++  ++    +  + + YN +L  +G+ K+   +  +Y
Sbjct: 248 DRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLY 307

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M  +G SP+  +Y  L+ ++GRA   E+ + ++ E++    +  +  +N+L+      
Sbjct: 308 EKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKN 367

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  DEA   F++M+  E   PD  T+S++I       KV  A  +F+EML  G  PN+  
Sbjct: 368 GDIDEAHMRFKEMR-EEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVT 426

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              L+ C  ++ RT + V    +L + G+TPD
Sbjct: 427 YNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 458



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 127/289 (43%), Gaps = 48/289 (16%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             +VE  F L      +KW +  N ++   L++ +  + N +    VY E++  G K ++
Sbjct: 23  GADVERCFDLV-----KKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDI 77

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN LLD + +  +  QV  ++K+M      P+  TY  ++R  G+    +++L++++E
Sbjct: 78  FAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQE 137

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M EKG   ++  YNT++   A+    D+   +F  M  + NC+P+ +TFS ++ +    G
Sbjct: 138 MTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVEN-NCRPNGFTFSVILNVLVAEG 196

Query: 277 KV--------------------------------SEAEAMFNEMLEAGFEPNLFVLTSLI 304
           ++                                SEA  +F  M     E +     S++
Sbjct: 197 QLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSML 256

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
           +    A +T + +  L+++ E  I+ D         VM  T    LGKL
Sbjct: 257 ESLCDAGKTTEALDLLSKIHEKRISTD--------TVMYNTVLSALGKL 297



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 99/198 (50%), Gaps = 1/198 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG    A  L  +   ++   D   ++T++   G         ++YE+MK  G  P++ +
Sbjct: 262 AGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFS 321

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+ + GRA R  +   I++E+ ++   P+  ++ SL+   G+    ++    ++EM+
Sbjct: 322 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 381

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E+G+   V  Y+TL+         + A  +F++M  +E C P+  T++ ++      G+ 
Sbjct: 382 EEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEML-AEGCSPNIVTYNILLDCLERSGRT 440

Query: 279 SEAEAMFNEMLEAGFEPN 296
           +EA  ++ ++ + G  P+
Sbjct: 441 AEAVDLYAKLKQQGLTPD 458



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 131/299 (43%), Gaps = 34/299 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+ N   AF +Y   R   +++D  A++ L+         D    V+++MK    +P+  
Sbjct: 54  RSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEY 113

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++   G+  +  +  T+++EMT+ G +PN   Y ++++A    R  + T+ ++ +M
Sbjct: 114 TYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKM 173

Query: 218 KE-----KGMQLSVTL---------------------------YNTLLAMCADVGYTDEA 245
            E      G   SV L                           Y  L+   + +G+  EA
Sbjct: 174 VENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEA 233

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             +F +M S  + + D   + SM+      GK +EA  + +++ E     +  +  +++ 
Sbjct: 234 HRLFCNMWSFHD-EGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLS 292

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
             GK ++T D+     ++ + G +PD      L++   +  + EE  K+ E +E S+ K
Sbjct: 293 ALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCK 351



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 69/135 (51%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG VE A  +++   N   + D  +F++LI   G  G+ D     ++EM+  G+ P+++
Sbjct: 331 RAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVV 390

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G+  +      ++ EM   G SPN  TY  LL    R+    + + +Y ++
Sbjct: 391 TYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 450

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y  L
Sbjct: 451 KQQGLTPDSITYAVL 465



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 7/203 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            + LI ++G   + + C ++   +K   ++ N  TY  LL    R+    +   +Y E+ 
Sbjct: 13  INILIGIFGGGADVERCFDL---VKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELR 69

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G   +   Y  LL A  +    +    V+++MK K  +     Y  ++ M   +G  D
Sbjct: 70  RRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKAD 129

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF---VL 300
           E+  +F++M + +   P+   +++MI   +    V +   +F++M+E    PN F   V+
Sbjct: 130 ESLTLFQEM-TEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVI 188

Query: 301 TSLIQCYGKAQRTDDVVRALNRL 323
            +++   G+  R D+VV   N+ 
Sbjct: 189 LNVLVAEGQLGRLDEVVEVSNKF 211



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ A   +   R E    D   +STLI+ +G     +    +++EM A G  PN++
Sbjct: 366 KNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIV 425

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           TYN LLD + R+ R  +   +Y ++   GL+P+  TYA L R
Sbjct: 426 TYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLER 467


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           +R G +  AFG++   + EK  + PNAF+  +LI      GN D    + EEM   G+ P
Sbjct: 602 SRNGKMHEAFGIFSELQ-EKGLL-PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINP 659

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++TYN L+D + +A    + K ++ ++   GL+PN  TYA+++  Y +++       + 
Sbjct: 660 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 719

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM  +G+     +YN +L  C      ++A ++F++M   E     + +F+++I     
Sbjct: 720 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM--LEKGFASTVSFNTLIEGYCK 777

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            GK+ EA  +  EM+E  F PN    TSLI    KA    +  R    + E  + P
Sbjct: 778 SGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMP 833



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 3/215 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PNA  ++TL+  +   G  +    + E M+  G+ P++  YN+L+    +AKR  + +
Sbjct: 447 LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEAR 506

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           T   EM +  L PN +TY + +  Y +A   E     + EM   G+  +V +Y  L+   
Sbjct: 507 TYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGH 566

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   EAF +F  + S    Q D  T+S +I   S  GK+ EA  +F+E+ E G  PN
Sbjct: 567 CKEGNVTEAFSVFRFILSRRVLQ-DVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPN 625

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            F   SLI    K    D   + L  +   GI PD
Sbjct: 626 AFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPD 660



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 145/344 (42%), Gaps = 10/344 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  +      +    D   +S LI+ +    N      + +EMK   + P ++
Sbjct: 358 KAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 417

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ + R         I +EM  NGL PN   Y +L+ A+ +    E++  +   M
Sbjct: 418 TYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERM 477

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G+   V  YN+L+         +EA     +M      +P++ T+ + I   S  G+
Sbjct: 478 REQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEM-LERRLRPNAHTYGAFIDGYSKAGE 536

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A+  FNEML  G  PN+ + T+LI+ + K     +       +    +  D +    
Sbjct: 537 MEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSV 596

Query: 338 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           L++ +++  K  E  G   E  EK      +    L+     +G+  K +  L     K 
Sbjct: 597 LIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKG 656

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPT 439
           +         D+     L++  CK  E+     ++ DI+ R  T
Sbjct: 657 INP-------DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT 693



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 114/232 (49%), Gaps = 1/232 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           +P  ++ LI  +   G+ +    + +EM A G++ N+I +N LL+ + +A +  +   I 
Sbjct: 310 EPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIM 369

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM + G+ P+  TY+ L+  + R +       +  EMK++ +  +V  Y+ ++      
Sbjct: 370 QEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRC 429

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G       I  +M  +   +P++  +++++T  +  G+V E+  +   M E G  P++F 
Sbjct: 430 GNLQGTNAILREMVMN-GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFC 488

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
             SLI  + KA+R ++    L  + E  + P+    G  ++  ++  + E+ 
Sbjct: 489 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIA 540



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 122/294 (41%), Gaps = 57/294 (19%)

Query: 96  DTRAGN-VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM------- 147
           D   GN VE+ + ++D     K   D   ++ +I  +   GN      V  EM       
Sbjct: 198 DLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLL 257

Query: 148 -KAI---------GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
            +AI         G+ P++ TY+ L++     KR  + K +  EM D GL P   TY +L
Sbjct: 258 DEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNAL 317

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           +  + R    E    +  EM   G++ ++ ++NTLL      G  ++A EI ++M   + 
Sbjct: 318 IDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM-EKG 376

Query: 258 CQPDSWTFSSMIT------------------------------------ICSCRGKVSEA 281
            +PDS T+S +I                                     +C C G +   
Sbjct: 377 VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRC-GNLQGT 435

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            A+  EM+  G +PN  V T+L+  + K  R ++    L R+ E GI P D FC
Sbjct: 436 NAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILP-DVFC 488



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 106/234 (45%), Gaps = 3/234 (1%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R+ PNA  +   I  Y  AG  +     + EM + GV PN+  Y  L++   +     + 
Sbjct: 516 RLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEA 575

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
            ++++ +    +  +  TY+ L+    R     +   ++ E++EKG+  +   YN+L++ 
Sbjct: 576 FSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 635

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  D+A ++ E+M   +   PD  T++ +I      G++  A+ +F+++   G  P
Sbjct: 636 SCKQGNVDKASQLLEEM-CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 694

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           N     +++  Y K++      + L  +   G+ PD      +LN   +  K E
Sbjct: 695 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFE 748



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 13/213 (6%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + P+AF  + ++        F+  L++++EM   G   + +++N L++   ++ +  +  
Sbjct: 727 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEAN 785

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM +    PN  TY SL+    +A    +   ++ EM+E+ +  +   Y +LL   
Sbjct: 786 HLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGY 845

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML------E 290
            ++G   E   +FE+M  ++  +PD  T+  MI      G V EA  + +E+L      +
Sbjct: 846 HNIGNMSEVSALFEEM-VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMK 904

Query: 291 AGFE---PNLFVLTSLIQCYGKAQRTDDVVRAL 320
           +GF    P   V+    Q  G      +V+R++
Sbjct: 905 SGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSM 937



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 104/233 (44%), Gaps = 22/233 (9%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN+  F  L+  Y   G     +NV+   K    +P++++ N+LL  + +  +      +
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 179 YKEMTDNGLSPNWNTYASLLRAY-----------------GRARYGEDTLSVYREMKEKG 221
           +  M  + + P+  TY +++ A+                  +AR  ++ + + R M +KG
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271

Query: 222 MQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           +   +  Y+ L+   C +    +    + E +      +P+  T++++I     +G + +
Sbjct: 272 LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVG--LKPEPITYNALIDGFMRQGDIEQ 329

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           A  + +EM+  G E NL +  +L+    KA + +  +  +  + E G+ PD +
Sbjct: 330 AFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQ 382


>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rotundifolia]
          Length = 440

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 184 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 243

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 244 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 303

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 304 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 358

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             N+ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 359 VKNIAVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLN 405



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 2   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 61

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 62  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 121

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 122 TSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EPN+    +L++ YG A+
Sbjct: 181 GMRKMGIEPNVVSYNTLLRVYGDAE 205



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 70  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 129

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 130 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 189

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 190 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 249

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 250 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 308

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 309 AGLVAHAKRLLHELKRPDNIPRD 331



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   N+ 
Sbjct: 308 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKNIA 363

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+ +  +    VY EM
Sbjct: 364 VFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 423

Query: 218 KEKGMQLSVTLYNTLLA 234
           +E G   S  ++  +L+
Sbjct: 424 QEVGCVFSDEVHFQMLS 440


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 119/223 (53%), Gaps = 8/223 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G +E A  ++D   +    I+PN   + TL+  Y   G  D  L+++ EM   G+KP+ 
Sbjct: 549 VGKMEKALRVFDAMVSAG--IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 606

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I YN ++D +  A R    K  + EMT++G++ N  TY+ +LR   + R  ++ + +++E
Sbjct: 607 ILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKE 666

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++   +++ +   NT++A        +EA ++F  + S     P + T+S MIT     G
Sbjct: 667 LRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI-SRSGLVPCAVTYSIMITNLLKEG 725

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            V EAE MF+ M  AG EP+  +L  +++   +  + +++VRA
Sbjct: 726 LVEEAEDMFSSMQNAGCEPDSRLLNHVVR---ELLKKNEIVRA 765



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 148/310 (47%), Gaps = 24/310 (7%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A++T+I  +   G+ +   ++++EM   G+ P+++TY++++  + +A+   + +   
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 180 KEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++M + G+ P NW TY +L+  Y      ++ + V++EM+ + +   V   NTL+     
Sbjct: 280 RQMVNKGVLPDNW-TYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCK 338

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA ++F+ M + +   PD ++++ M+   + +G + +   +F+ ML  G  P+++
Sbjct: 339 YGKIKEARDVFDTM-AMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIY 397

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECV 357
               LI+ Y      D  +   N + + G+ P       ++  MT       +GK+ + +
Sbjct: 398 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPH------VVTYMTVIAALCRIGKMDDAM 451

Query: 358 EKSNSKLG-------YVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 410
           EK N  +        Y    L++     G   K A EL + I  +  +      +D+   
Sbjct: 452 EKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLK-AKELISEIMNNGMR------LDIVFF 504

Query: 411 LNLLENACKL 420
            +++ N CKL
Sbjct: 505 GSIINNLCKL 514



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 42/250 (16%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +P+ FS  I L G A    GCL    ++++ M   G+ P++ T+N L+          + 
Sbjct: 358 NPDVFSYTIMLNGYATK--GCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKA 415

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--------------- 220
             I+ EM D+G+ P+  TY +++ A  R    +D +  + +M ++               
Sbjct: 416 MIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQG 475

Query: 221 --------------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
                               GM+L +  + +++     +G   +A  IF D+  +    P
Sbjct: 476 FCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHP 534

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D+  ++ ++      GK+ +A  +F+ M+ AG EPN+    +L+  Y K  R D+ +   
Sbjct: 535 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 594

Query: 321 NRLPELGITP 330
             + + GI P
Sbjct: 595 REMLQKGIKP 604



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 106/246 (43%), Gaps = 7/246 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+V  A  L+          D   +S+++     A   D       +M   GV P+  
Sbjct: 233 KEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNW 292

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVY 214
           TYNNL+       +  +   ++KEM    + P+    NT    L  YG+ +   D   V+
Sbjct: 293 TYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARD---VF 349

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             M  KG    V  Y  +L   A  G   +  ++F D+   +   PD +TF+ +I   + 
Sbjct: 350 DTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLF-DLMLGDGIAPDIYTFNVLIKAYAN 408

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G + +A  +FNEM + G +P++    ++I    +  + DD +   N++ + G+ PD   
Sbjct: 409 CGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYA 468

Query: 335 CGCLLN 340
             CL+ 
Sbjct: 469 YHCLIQ 474



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 41/274 (14%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRID----------------------------------PN 122
           TRA   E+A   + +      R+D                                  P+
Sbjct: 124 TRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPD 183

Query: 123 AFSTLIKL-----YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
            FS  I L      G +G  D  L +  E   +   P+++ YN ++D   +     +   
Sbjct: 184 VFSYNILLKSLCNQGKSGQADDLLRMMAEGGTV-CSPDVVAYNTVIDGFFKEGDVNKACD 242

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++KEM   G+ P+  TY+S++ A  +AR  +   +  R+M  KG+      YN L+   +
Sbjct: 243 LFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 302

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G   EA  +F++M+  ++  PD    ++++      GK+ EA  +F+ M   G  P++
Sbjct: 303 STGQWKEAVRVFKEMR-RQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDV 361

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           F  T ++  Y       D+    + +   GI PD
Sbjct: 362 FSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 395



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 15/274 (5%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N   R+D   F ++I      G      N+++    +G+ P+ + YN L+D      +  
Sbjct: 494 NNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKME 553

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++  M   G+ PN   Y +L+  Y +    ++ LS++REM +KG++ S  LYN ++
Sbjct: 554 KALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 613

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
               + G T  A   F +M  S     +  T+S ++          EA  +F E+     
Sbjct: 614 DGLFEAGRTVPAKVKFHEMTES-GIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNV 672

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEELGK 352
           + ++  L ++I    + +R ++       +   G+ P    C    ++M T   KE L +
Sbjct: 673 KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP----CAVTYSIMITNLLKEGLVE 728

Query: 353 LVECV---------EKSNSKLGYVVKLLLEEQDI 377
             E +         E  +  L +VV+ LL++ +I
Sbjct: 729 EAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEI 762



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/333 (19%), Positives = 140/333 (42%), Gaps = 8/333 (2%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +   G   K+ I  N       K    +Y T      R G ++ A   +++  ++    D
Sbjct: 406 YANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 465

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
             A+  LI+ + T G+      +  E+   G++ +++ + ++++ + +  R    + I+ 
Sbjct: 466 KYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFD 525

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
              + GL P+   Y  L+  Y      E  L V+  M   G++ +V  Y TL+     +G
Sbjct: 526 LTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIG 585

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             DE   +F +M   +  +P +  ++ +I      G+   A+  F+EM E+G   N    
Sbjct: 586 RIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 644

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
           + +++   K +  D+ +     L  + +  D      ++  M QT + EE   L   + +
Sbjct: 645 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISR 704

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           S      V   ++    ++    +EA ++F+S+
Sbjct: 705 SGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSM 737



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 2/183 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P   TY  L+D   RA RP      + ++   GL  +    + LL+ +  A+  ++ L
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 212 SVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMI 269
            +      E G    V  YN LL    + G + +A ++   M +    C PD   ++++I
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVI 228

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G V++A  +F EM++ G  P+L   +S++    KA+  D     L ++   G+ 
Sbjct: 229 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 288

Query: 330 PDD 332
           PD+
Sbjct: 289 PDN 291


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 141/312 (45%), Gaps = 36/312 (11%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +F+TLI  Y  +GN D    +   M    V P++ TY+ L++ + +  +      ++ EM
Sbjct: 262 SFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEM 321

Query: 183 TDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            D GL PN  T+ +L+  +   GRA  G   + +Y++M  KG++  V  YNTL+     V
Sbjct: 322 CDRGLVPNDVTFTTLINGHCVTGRADLG---MEIYQQMLRKGVKPDVITYNTLINGLCKV 378

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++  +M +    +PD +T++ +I  C   G +  A  +  EM++ G E +   
Sbjct: 379 GDLREAKKLVIEM-TQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVA 437

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
            T+LI  + +  +  +  R L  + E GI PDD     +++   +              K
Sbjct: 438 FTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCK--------------K 483

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEAT--ELFNSISKDVKKAYCNCLIDLCVNLN----- 412
            + K G+    LL+E   +G      T   L N + K  +    N L+D  +NL      
Sbjct: 484 GDVKTGFK---LLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDD 540

Query: 413 -----LLENACK 419
                LLE  CK
Sbjct: 541 ITYNILLEGHCK 552



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 1/212 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN++  F L       +   D   +S LI      G  D    ++ EM   G+ PN +
Sbjct: 272 KSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDV 331

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+  L++      R      IY++M   G+ P+  TY +L+    +     +   +  EM
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEM 391

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++     Y  L+  C   G  + A EI ++M   E  + D+  F+++I+     G+
Sbjct: 392 TQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEM-VKEGIELDNVAFTALISGFCREGQ 450

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           V EAE    EMLEAG +P+    T +I  + K
Sbjct: 451 VIEAERTLREMLEAGIKPDDATYTMVIHGFCK 482



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 88/217 (40%), Gaps = 1/217 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G  ++   +Y +   +  + D   ++TLI      G+      +  EM   G+KP+  T
Sbjct: 343 TGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFT 402

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+D   +         I KEM   G+  +   + +L+  + R     +     REM 
Sbjct: 403 YTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREML 462

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E G++     Y  ++      G     F++ ++M+   +  P   T++ ++     +G++
Sbjct: 463 EAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHV-PGVVTYNVLLNGLCKQGQM 521

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
             A  + + ML  G  P+      L++ + K    +D
Sbjct: 522 KNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNRED 558



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 105/278 (37%), Gaps = 15/278 (5%)

Query: 56  PTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNE 115
           PT H  +P        ++    I V+P  P  S LK         +      L D     
Sbjct: 30  PTSHCHDPIL------TTISEAIKVSPTKPLHSSLKRILPSLTPNH------LIDLINLN 77

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQ 174
              + P +  +  K   T  +F   ++ Y  M        M++   +LL  +   K    
Sbjct: 78  PHSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNS 137

Query: 175 VKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             +++  + +  G   +   ++ L+ AY  + Y  D +  +R +++  +Q+       L 
Sbjct: 138 ASSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLF 197

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                +  T  A+  +E++       PD   F+ ++       K++EA+ +F E+ + G 
Sbjct: 198 DRLMKLNLTSPAWAFYEEILDC-GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGL 256

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            P +    +LI  Y K+   D   R    + E  + PD
Sbjct: 257 RPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPD 294


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 120/247 (48%), Gaps = 1/247 (0%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           S+  + G V  A  +    +N++   D   ++TLI  +G +GN      +++EMK   + 
Sbjct: 330 SFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIV 389

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ +TY +++  + +A +  + + ++ EM   GL P+  TY +L+  Y +A   ++  S+
Sbjct: 390 PDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSL 449

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + +M EKG+  +V  Y  L+      G  D A E+  +M S +  QP+  T++++I    
Sbjct: 450 HNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM-SEKGLQPNVCTYNALINGLC 508

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G + +A  +  EM  AGF P+    T+++  Y K          L  + + G+ P   
Sbjct: 509 KVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIV 568

Query: 334 FCGCLLN 340
               L+N
Sbjct: 569 TFNVLMN 575



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 124/236 (52%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GNV + + L+D  + +K   D   ++++I     AG       ++ EM + G+KP+ +
Sbjct: 369 KSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEV 428

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYR 215
           TY  L+D   +A    +  +++ +M + GL+PN  TY +L+   G  + GE  ++  +  
Sbjct: 429 TYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVD--GLCKCGEVDIANELLH 486

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM EKG+Q +V  YN L+     VG  ++A ++ E+M  +    PD+ T+++++      
Sbjct: 487 EMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLA-GFFPDTITYTTIMDAYCKM 545

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G++++A  +   ML+ G +P +     L+  +  +   +D  R +  + + GI P+
Sbjct: 546 GEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPN 601



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 128/282 (45%), Gaps = 24/282 (8%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++S ++  Y         L + EE++  G+KPN  TYN+++  + +  R  + + + 
Sbjct: 286 DVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVL 345

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M +  + P+   Y +L+  +G++        ++ EMK K +      Y +++      
Sbjct: 346 RVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQA 405

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++F +M  S+  +PD  T++++I      G++ EA ++ N+M+E G  PN+  
Sbjct: 406 GKVVEARKLFSEM-LSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVT 464

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
            T+L+    K    D     L+ + E G+ P+      L+N + +     +G + + V+ 
Sbjct: 465 YTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCK-----VGNIEQAVK- 518

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 401
                      L+EE D+ G F    T         +  AYC
Sbjct: 519 -----------LMEEMDLAGFFPDTIT------YTTIMDAYC 543



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 47/250 (18%)

Query: 134 AGNFDG---CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           + +FDG      V+ E   +GV  N ++YN +L  + +  +  +  ++  +M   G  P+
Sbjct: 227 SNSFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPD 286

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA----- 245
             +Y+ ++  Y +       L +  E++ KG++ +   YN++++     G   EA     
Sbjct: 287 VVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLR 346

Query: 246 ------------------------------FEIFEDMKSSENCQPDSWTFSSMITICSCR 275
                                         +++F++MK  +   PD  T++SMI      
Sbjct: 347 VMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKK-IVPDFVTYTSMIHGLCQA 405

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD---- 331
           GKV EA  +F+EML  G +P+    T+LI  Y KA    +     N++ E G+TP+    
Sbjct: 406 GKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTY 465

Query: 332 ----DRFCGC 337
               D  C C
Sbjct: 466 TALVDGLCKC 475



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 107/245 (43%), Gaps = 3/245 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V++A  L      +  + +   ++ LI      GN +  + + EEM   G  P+ I
Sbjct: 474 KCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTI 533

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D   +     +   + + M D GL P   T+  L+  +  +   ED   + + M
Sbjct: 534 TYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWM 593

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG+  + T +N+L+             EI++ M  ++   PD+ T++ +I    C+ +
Sbjct: 594 LDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGM-HAQGVVPDTNTYNILIK-GHCKAR 651

Query: 278 -VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + EA  +  EM+E GF        SLI+ + K ++ ++  +    +   G   +     
Sbjct: 652 NMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYD 711

Query: 337 CLLNV 341
             ++V
Sbjct: 712 IFVDV 716



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 104 MAFGLYDRARNEKWRID----PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           M+  L D  R  KW +D    PNA  F++L+K Y    N    + +Y+ M A GV P+  
Sbjct: 579 MSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTN 638

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+    +A+   +   ++KEM + G S    +Y SL++ + + +  E+   ++ EM
Sbjct: 639 TYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEM 698

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           +  G      +Y+  +    DV Y +  +E
Sbjct: 699 RTHGFIAEKEIYDIFV----DVNYEEGNWE 724


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 123/259 (47%), Gaps = 2/259 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +E+ + L           D   +ST ++ +  A +FD    V+EEM+      N +
Sbjct: 222 RADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEV 281

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++  + R+    +     +EM D GLSP+  TY +L+    +    ++  ++  EM
Sbjct: 282 TYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEM 341

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++ +V +Y TL+      G   EAF+I  +M S+   QP+   + ++I      G+
Sbjct: 342 SCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISA-GVQPNKIMYDNLIRGLCKIGQ 400

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  + NEM++ G  P+ F    L+Q + +    D     LN +   GI P+    G 
Sbjct: 401 LGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGI 460

Query: 338 LLNVMTQTPK-EELGKLVE 355
           ++N + Q  + +E G L+E
Sbjct: 461 MINGLCQNGESKEAGNLLE 479



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 111/231 (48%), Gaps = 6/231 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R+ N+E+AF +           D + +S+LI       + +  + + +EM   G++P +
Sbjct: 641 SRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGI 700

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVY 214
           + YN L+D   R+    + + ++  +   GL PN  TY +L+   G  + G+  D   +Y
Sbjct: 701 VCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALID--GNCKNGDITDAFDLY 758

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           ++M ++G+     +YN L   C+D    ++A  + E+M +          FS+++     
Sbjct: 759 KDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVS--LFSTLVRGFCK 816

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           RG++ E E + + M++    PN   + ++I  +GKA +  +  R    L +
Sbjct: 817 RGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQ 867



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 1/209 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
               L+  Y   G+      V   M  +G+ P     N LL  + RA     V  +   M
Sbjct: 177 VLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFM 236

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G+ P+  TY++ L A+ +AR  +    V+ EM+ +   ++   YN +++     G  
Sbjct: 237 EGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAV 296

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           +EAF   E+M       PD++T+ +++      G++ EA+A+ +EM  +G +PN+ V  +
Sbjct: 297 EEAFGFKEEM-VDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYAT 355

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           L+  + K  +  +    LN +   G+ P+
Sbjct: 356 LVDGFMKEGKAAEAFDILNEMISAGVQPN 384



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 111/273 (40%), Gaps = 37/273 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A + + A  +++  R     ++   ++ +I     +G  +      EEM   G+ P+  
Sbjct: 257 KARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAF 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++ + +  R  + K +  EM+ +GL PN   YA+L+  + +     +   +  EM
Sbjct: 317 TYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEM 376

Query: 218 KEKGMQLSVTLYNTLLAMCADVGY-----------------------------------T 242
              G+Q +  +Y+ L+     +G                                     
Sbjct: 377 ISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDK 436

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D AFE+  +M++S    P+++T+  MI      G+  EA  +  EM+  G +PN F+   
Sbjct: 437 DGAFELLNEMRNS-GILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAP 495

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           LI  + K         +L  + +  + P D FC
Sbjct: 496 LIIGHSKEGHISLACESLENMTKANVLP-DLFC 527



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 105/220 (47%), Gaps = 7/220 (3%)

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           DG   +  EM+  G+ PN  TY  +++ + +     +   + +EM   GL PN   YA L
Sbjct: 437 DGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPL 496

Query: 198 LRAYGRARYGEDTLSV--YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +   G ++ G  +L+      M +  +   +  YN+L+   + VG  +EA E +  ++  
Sbjct: 497 I--IGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQK- 553

Query: 256 ENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
               PD +T+S +I   C  R  + +A+ +  +ML +G +PN    T L++ Y K+   +
Sbjct: 554 RGLVPDEFTYSGLIHGYCKTR-NLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHE 612

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
            V   L  +   G  PD+   G ++  ++++   E+  +V
Sbjct: 613 KVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMV 652



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +E A   Y + +      D   +S LI  Y    N +    + ++M   G+KPN  T
Sbjct: 538 VGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADT 597

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y +LL+   ++    +V +I + M  +G  P+ + Y  ++R   R+   E    V  E++
Sbjct: 598 YTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVE 657

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G+   + +Y++L++    +   ++A  + ++M + E  +P    ++++I      G +
Sbjct: 658 KNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEM-AKEGLEPGIVCYNALIDGFCRSGDI 716

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           S A  +F+ +L  G  PN    T+LI    K     D       + + GI PD
Sbjct: 717 SRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPD 769



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 98/208 (47%), Gaps = 6/208 (2%)

Query: 116 KWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  + P+ F  ++LIK   T G  +     Y +++  G+ P+  TY+ L+    + +   
Sbjct: 518 KANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLE 577

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + ++M ++GL PN +TY  LL  Y ++   E   S+ + M   G +    +Y  ++
Sbjct: 578 KADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVI 637

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
              +     + AF +  +++ +    PD   +SS+I+       + +A  + +EM + G 
Sbjct: 638 RNLSRSENMEVAFMVLTEVEKN-GLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGL 696

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALN 321
           EP +    +LI  +    R+ D+ RA N
Sbjct: 697 EPGIVCYNALIDGFC---RSGDISRARN 721



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 3/214 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PNAF  + LI  +   G+        E M    V P++  YN+L+  +    R  + +
Sbjct: 486 LKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAE 545

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             Y ++   GL P+  TY+ L+  Y + R  E    + ++M   G++ +   Y  LL   
Sbjct: 546 EYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGY 605

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                 ++   I + M  S + +PD+  +  +I   S    +  A  +  E+ + G  P+
Sbjct: 606 FKSNDHEKVSSILQSMLGSGD-KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPD 664

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           L + +SLI    K    +  V  L+ + + G+ P
Sbjct: 665 LHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEP 698


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 157/327 (48%), Gaps = 36/327 (11%)

Query: 92  EKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 145
           E SY+T      +AG+V+ A  L+   ++    +   + + +++   + G       V++
Sbjct: 137 EVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWEVFK 195

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           +M  I   PN+I+Y  ++D + ++++  +  T++K+M D  + P+  TY +L+   G+ R
Sbjct: 196 DMSGI-FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQR 254

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             ++   ++ E + KG   +V  YNT++      G  + A  +++DM    + +PD +T+
Sbjct: 255 RVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTY 314

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           S++I   +   +  +A  ++ EML+ G  P++    +L+    K+   D   +A+    +
Sbjct: 315 SALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCED---KAMEIFRK 371

Query: 326 LGI----TPD--------DRFCGC-LLNVMTQTPKEELGK--LVECVEKSNSKLGYVVKL 370
           +G+     P+        DRFC    L    +  KE  G+  L + V  +      V++ 
Sbjct: 372 MGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTT-----VIQK 426

Query: 371 LLEEQDIEGDFKKEATELFNSISKDVK 397
           L +E  I+     EA ELF SI K  K
Sbjct: 427 LCKESRID-----EAHELFESIGKTCK 448



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 4/236 (1%)

Query: 98  RAGNVEMAFGLYD-RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           + G +E A  LYD   R    + D   +S LI     +   +    +YEEM   G  P++
Sbjct: 287 KCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDV 346

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +TYN LLD + ++    +   I+++M   N   PN  TY  L+  + +     D + + +
Sbjct: 347 VTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAK 406

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM+ + +      + T++         DEA E+FE +   + C+PDS  F++M+      
Sbjct: 407 EMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESI--GKTCKPDSVLFNTMLAGYCKI 464

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ +A+ + + ML++G  P L   T+L+  + +  R  D +   + + E+G  P+
Sbjct: 465 TRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 5/160 (3%)

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N  T NNLL    +A+R       ++    N   P+  +Y +L+  + +A   +  L+++
Sbjct: 101 NRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALF 160

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICS 273
            EMK+ G+ +  +    L  +C+  G    A+E+F+DM  S    P+  +++ MI  +C 
Sbjct: 161 GEMKDSGIAVLRSHNIVLRGLCSG-GKISMAWEVFKDM--SGIFSPNLISYTIMIDGLCK 217

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
            R KV +A  +F +M++    P++    +LI   GK +R 
Sbjct: 218 SR-KVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRV 256


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 113/209 (54%), Gaps = 3/209 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y   G+ +G  +++++MK+  ++P+ ITYN L++ +G+ +R  +   +  EM 
Sbjct: 366 YNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEME 425

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
            NG++P+  T+ +L+ AYGRA   E    +  +M+EKG++ +V  Y +++ A C + G  
Sbjct: 426 KNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKN-GKI 484

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EA  I +DM   ++  P +  ++++I      G   +A  +  +M  +G  P++     
Sbjct: 485 LEAVAILDDM-FIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNL 543

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           LI+   K  +  +    L+ L   G+ PD
Sbjct: 544 LIKGLCKQSQISEAEELLDSLRNYGLAPD 572



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 41/295 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  L+D    +    +   ++T+I  +   G+ +    ++ +M   G+KPN+I
Sbjct: 200 KAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVI 259

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL  + RA R  +   +  EM    + P+  TY+ L   + R    +  LS++ E 
Sbjct: 260 TYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEES 319

Query: 218 KEKGMQL-----------------------------------SVTLYNTLLAMCADVGYT 242
            +KG+++                                   +  +YNTL+     +G  
Sbjct: 320 VKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDL 379

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           + AF IF+ MK S   +PD  T++++I       +++EA  +  EM + G  P++    +
Sbjct: 380 EGAFSIFQQMK-SRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNT 438

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
           LI  YG+A + +     L+ + E G+ P+    G ++N   +      GK++E V
Sbjct: 439 LIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKN-----GKILEAV 488



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 1/236 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++E AF ++ + ++   R D   ++ LI   G         ++  EM+  GV P++ 
Sbjct: 375 QIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVE 434

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+D  GRA +  +   I  +M + GL PN  +Y S++ A+ +     + +++  +M
Sbjct: 435 TFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDM 494

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             K +     +YN ++    + G TD+AF + E MKSS    P   T++ +I     + +
Sbjct: 495 FIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSS-GVPPSIVTYNLLIKGLCKQSQ 553

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           +SEAE + + +   G  P++    +LI        TD  +     + + GI P  R
Sbjct: 554 ISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPR 609



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 103/255 (40%), Gaps = 38/255 (14%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  ++P+   F+TLI  YG AG  + C  +  +M+  G+KPN+++Y ++++   +  + 
Sbjct: 425 EKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKI 484

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   I  +M    + P    Y +++ AY      +    +  +MK  G+  S+  YN L
Sbjct: 485 LEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLL 544

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR----------------- 275
           +          EA E+ + +++     PD  +++++I+ C  R                 
Sbjct: 545 IKGLCKQSQISEAEELLDSLRNY-GLAPDVISYNTLISACCYRSNTDRALELEKEMWKCG 603

Query: 276 ------------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
                             G+V E E ++ +ML+    P   +   ++  Y K      V 
Sbjct: 604 IKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVE 663

Query: 318 RALNRLPELGITPDD 332
                + + GI   D
Sbjct: 664 ALRKEMSDKGIAVGD 678



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 103/226 (45%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG +     + D   + K   D   +S L   +   G+    L+++EE    GVK    
Sbjct: 270 RAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAY 329

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T + LL+ + +  +  + + + + + ++GL      Y +L+  Y +    E   S++++M
Sbjct: 330 TCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQM 389

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K + ++     YN L+     V    EA ++  +M+ +    P   TF+++I      G+
Sbjct: 390 KSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKN-GVNPSVETFNTLIDAYGRAGQ 448

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           + +   + ++M E G +PN+    S++  + K  +  + V  L+ +
Sbjct: 449 LEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDM 494



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 116/264 (43%), Gaps = 10/264 (3%)

Query: 50  ETQSSNPTKHSQNPQY-PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNV 102
           E    NP+  + N     +G+ G   K +I ++    +  K    SY +      + G +
Sbjct: 425 EKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKI 484

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
             A  + D    +        ++ +I  Y   G+ D    + E+MK+ GV P+++TYN L
Sbjct: 485 LEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLL 544

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  + +  +  + + +   + + GL+P+  +Y +L+ A       +  L + +EM + G+
Sbjct: 545 IKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGI 604

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           + S   Y  L +     G   E   +++ M   ++  P S  ++ M+   +  G+ S+ E
Sbjct: 605 KPSPRTYRMLFSSLGGAGRVHEMENLYQQML-DKDVVPCSGIYNIMVDAYAKCGEESKVE 663

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQC 306
           A+  EM + G     +  TS+  C
Sbjct: 664 ALRKEMSDKGIAVGDY--TSMTNC 685



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 8/227 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM 156
           R  +V  AF L   AR    R D   ++  ++    AG+ D  + +   M   G   PN 
Sbjct: 132 RHADVRGAFELLVAAR---ARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNA 188

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN ++  + +A        ++ EM +  + PN  TY +++  + +    E    ++ +
Sbjct: 189 FSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQ 248

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G++ +V  YN LL+     G   E   + ++M +S    PD +T+S +    S  G
Sbjct: 249 MLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEM-ASRKMVPDGFTYSILFDGHSRTG 307

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRAL 320
                 ++F E ++ G +   +  + L+      GK  + ++V++ L
Sbjct: 308 DSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTL 354



 Score = 38.9 bits (89), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 9/193 (4%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           +N  +  C   G  DEA  +   M       P++++++ +I      G   +A  +F+EM
Sbjct: 155 WNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEM 214

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 347
            E    PN     ++I  + K    +   R  +++   G+ P+      LL+ + +  + 
Sbjct: 215 PEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRM 274

Query: 348 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 406
            E    L E   +     G+   +L +     GD +   +    S+ K VK     C I 
Sbjct: 275 GETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSI- 333

Query: 407 LCVNLNLLENACK 419
                 LL   CK
Sbjct: 334 ------LLNGLCK 340


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 142/308 (46%), Gaps = 15/308 (4%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN   +S L++ Y  AG ++    V+EEM   G++P+++ Y  L+D++ R  +  +  
Sbjct: 179 IEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKAT 238

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  +M + GL PN  TY  L+ +  +    ++ +S+   M EKG+ L    YNTL+   
Sbjct: 239 QVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGL 298

Query: 237 ADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           + V   DEA  + E+M   E   +P+  TF+S+I      G++ +A  + + M E G   
Sbjct: 299 SGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCAC 358

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN---VMTQTPKEELGK 352
           NL     LI    +  +    +  ++ +   G+ PD      L+N    M Q  + E   
Sbjct: 359 NLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAE--S 416

Query: 353 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 412
           L+  + +   +   V  + L     E    ++A   F+ + K       NC +D+     
Sbjct: 417 LLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHK-------NCKLDVVAYST 469

Query: 413 LLENACKL 420
           ++  AC+L
Sbjct: 470 MIHGACRL 477



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 12/236 (5%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A GL    +    R D   + TLI+    A + D  + +  EM   G++PN++ Y+ LL 
Sbjct: 132 AVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQ 191

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              +A R   V  +++EM+  G+ P+   Y  L+ +  R    +    V  +M E+G++ 
Sbjct: 192 GYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEP 251

Query: 225 SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           +V  YN L+ +MC + G   EA  +  +M   +    D+ T++++IT  S   ++ EA  
Sbjct: 252 NVVTYNVLINSMCKE-GSVKEAMSLRNNML-EKGVALDAVTYNTLITGLSGVLEMDEAMG 309

Query: 284 MFNEML--EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  EM+  E   EPN+    S+I    K  R     +  + + E G       C C
Sbjct: 310 LLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENG-------CAC 358



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + L  L    G  D  L +   M A   +P  ++Y  L+  +   +R  Q   + ++M  
Sbjct: 83  TVLAALCRQGGCLDAALFLLRVM-AHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQA 141

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
           +G+ P+  TY +L+R    A   +  + + REM E G++ +V +Y+ LL      G  + 
Sbjct: 142 SGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWEC 201

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
             ++FE+M S    +PD   ++ +I      GKV +A  + ++M+E G EPN+     LI
Sbjct: 202 VSKVFEEM-SGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLI 260

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
               K     + +   N + E G+  D
Sbjct: 261 NSMCKEGSVKEAMSLRNNMLEKGVALD 287



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 130/309 (42%), Gaps = 45/309 (14%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTR----AGNVEM--AFGLYDRARNEKWRIDPN 122
           K GS  ++    N    +   L   +Y+T     +G +EM  A GL +   + +  ++PN
Sbjct: 265 KEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPN 324

Query: 123 A--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              F+++I      G       V + M   G   N++T+N L+  + R  +  +   +  
Sbjct: 325 VVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMD 384

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM  +GL P+  TY+ L+  + +    +   S+  +M+  G++  +  Y  LLA   + G
Sbjct: 385 EMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQG 444

Query: 241 YTDEAFEIFEDMKSSENCQ-----------------------------------PDSWTF 265
             ++A   F++M   +NC+                                   PDS T+
Sbjct: 445 MMEQARNFFDEMH--KNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTY 502

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           S +I + +  G +  AE +  +M  +GF P++ V  SLI+ YG    T+ V+  +  +  
Sbjct: 503 SMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTA 562

Query: 326 LGITPDDRF 334
             I  D + 
Sbjct: 563 KDIALDSKI 571



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 1/194 (0%)

Query: 111 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           R    + R    +++TL++           + +  +M+A GV+P+++TY  L+  +  A 
Sbjct: 103 RVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAA 162

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
              +   + +EM ++G+ PN   Y+ LL+ Y +A   E    V+ EM  +G++  V +Y 
Sbjct: 163 DVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYT 222

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
            L+      G   +A ++ + M      +P+  T++ +I      G V EA ++ N MLE
Sbjct: 223 GLIDSLCREGKVKKATQVMDKMM-ERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLE 281

Query: 291 AGFEPNLFVLTSLI 304
            G   +     +LI
Sbjct: 282 KGVALDAVTYNTLI 295



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 108/236 (45%), Gaps = 3/236 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  E    +++         D   ++ LI      G       V ++M   G++PN++
Sbjct: 195 KAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVV 254

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+++M +     +  ++   M + G++ +  TY +L+         ++ + +  EM
Sbjct: 255 TYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEM 314

Query: 218 --KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
              E  ++ +V  +N+++      G   +AF++  DM +   C  +  TF+ +I      
Sbjct: 315 IHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQV-RDMMAENGCACNLVTFNLLIGGLLRV 373

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            KV +A  + +EM  +G EP+ F  + LI  + K  + D     L+++   GI P+
Sbjct: 374 HKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPE 429



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 107 GLYDRARN------EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           G+ ++ARN      +  ++D  A+ST+I       +        + M   G+ P+ +TY+
Sbjct: 444 GMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYS 503

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L++    +      + + K+MT +G  P+   + SL++ YG     E  L + REM  K
Sbjct: 504 MLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAK 563

Query: 221 GMQLSVTLYNTL 232
            + L   + +T+
Sbjct: 564 DIALDSKIISTI 575


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 9/195 (4%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L VY+ M + G+KP+M TY+ L+  +GR     ++  + +EM   GL PN  TY   +RA
Sbjct: 220 LKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRA 279

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQ 259
            GRAR  +D   +++EM ++G    V  Y  L+ A+CA  G  D+A E++  M++S +  
Sbjct: 280 LGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCA-AGKLDKAKELYVKMRASSH-S 337

Query: 260 PDSWTFSSMITICSCRGKVSEAEAM---FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           PD  T+   IT+    GKV + E +   +NEM   G+ P++   T LI+   K+   D  
Sbjct: 338 PDRVTY---ITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRA 394

Query: 317 VRALNRLPELGITPD 331
              L+ +   GI P+
Sbjct: 395 FDMLDVMTTKGIFPN 409



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 1/226 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  +Y R  +E  +     +S L+   G  G+    +N+ EEMK+IG++PN+ TY   + 
Sbjct: 219 ALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIR 278

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +GRA+R      I+KEM D G  P+  TY  L+ A   A   +    +Y +M+      
Sbjct: 279 ALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSP 338

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               Y TL+     VG  +     + +M+  +   PD  T++ +I      G V  A  M
Sbjct: 339 DRVTYITLMDKFGKVGDLETVKRFWNEME-VDGYAPDVVTYTILIEALCKSGDVDRAFDM 397

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            + M   G  PNL    ++I    KA+R D+ +  L  +  LG+ P
Sbjct: 398 LDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKP 443



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 146/340 (42%), Gaps = 51/340 (15%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  ++ A+G++    +E    D   ++ LI     AG  D    +Y +M+A    P+ +
Sbjct: 282 RARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRV 341

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  G+      VK  + EM  +G +P+  TY  L+ A  ++   +    +   M
Sbjct: 342 TYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVM 401

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-------- 269
             KG+  ++  YNT++         DEA E+ E+M+S    +P ++++   I        
Sbjct: 402 TTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESL-GVKPTAFSYVLFIDYYGKSGD 460

Query: 270 ------------------TICSCR---------GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                             +I +C          G++SEAE +FN++ + G  P+      
Sbjct: 461 PAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNM 520

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVECV 357
           L++CY KA + D   + L+ +   G  PD      L+N + +  + +      G+L    
Sbjct: 521 LMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRL---- 576

Query: 358 EKSNSKLGYVV---KLLLEEQDIEGDFKKEATELFNSISK 394
              N KL   V    +LL     EG   K A ELF S+++
Sbjct: 577 --KNLKLAPTVVTYNILLTGLGKEGKILK-ALELFGSMTE 613



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + P AFS    I  YG +G+    ++ +E MK  G+ P++   N  L T+    R 
Sbjct: 437 ESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRI 496

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + + I+ ++   GLSP+  TY  L++ Y +A   +    +  EM  KG +  V + N+L
Sbjct: 497 SEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSL 556

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G  D A+++F  +K+ +   P   T++ ++T     GK+ +A  +F  M E+G
Sbjct: 557 INTLYKAGRVDAAWKMFGRLKNLK-LAPTVVTYNILLTGLGKEGKILKALELFGSMTESG 615

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             PN     SL+ C  K    D  ++   R+  +   PD
Sbjct: 616 CPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPD 654



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 1/191 (0%)

Query: 141  LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
            L ++E+MK+ G  PN  TYN LLD  G++KR  ++  +Y EM   G  PN  T+  ++ A
Sbjct: 816  LELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISA 875

Query: 201  YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
              ++      L +Y E+       +   Y  L+      G +++A +IFE+M     C P
Sbjct: 876  LVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDY-GCGP 934

Query: 261  DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
            +S  ++ +I      G++  A  +F +M++ G  P+L   T L++C     R D+ V+  
Sbjct: 935  NSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYF 994

Query: 321  NRLPELGITPD 331
              L   G+ PD
Sbjct: 995  EELKLTGLDPD 1005



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 108  LYDRARNEKWR-IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
            LYD     + R  +PNA +   +I     + N +  L++Y E+ +    P   TY  L+D
Sbjct: 850  LYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLID 909

Query: 165  TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             + +A R  Q   I++EM D G  PN   Y  L+  +G++   +    ++++M ++G++ 
Sbjct: 910  GLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRP 969

Query: 225  SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
             +  Y  L+      G  DEA + FE++K +    PD+ +++ +I       ++ EA ++
Sbjct: 970  DLKSYTILVECLCITGRIDEAVQYFEELKLT-GLDPDTVSYNFIINGLGKSRRLDEALSL 1028

Query: 285  FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            F+EM   G  P+L+   +LI   G A + D  V+    L  +G+ P
Sbjct: 1029 FSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEP 1074



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 131/304 (43%), Gaps = 13/304 (4%)

Query: 39   TSLQKRSVSLQETQSSNPTKHSQNPQY-----PHGKTGSSPKSYIWVNPKSPRASKLKEK 93
            ++  ++++ L E   S  T H  N  Y      HGK+    K Y   +    R  +    
Sbjct: 809  SNFTEKALELFEDMKSAGT-HPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAI 867

Query: 94   SYD------TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 147
            +++       ++ N+  A  LY    +  +   P  +  LI     AG  +  + ++EEM
Sbjct: 868  THNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEM 927

Query: 148  KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
               G  PN + YN L++  G++        ++K+M   G+ P+  +Y  L+         
Sbjct: 928  LDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRI 987

Query: 208  EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
            ++ +  + E+K  G+      YN ++         DEA  +F +MK+     PD +T+++
Sbjct: 988  DEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKN-RGISPDLYTYNA 1046

Query: 268  MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            +I      GKV  A  M+ E+   G EP++F   +LI+ +  +   D       ++  +G
Sbjct: 1047 LILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVG 1106

Query: 328  ITPD 331
             +P+
Sbjct: 1107 CSPN 1110



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 96/171 (56%), Gaps = 1/171 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            ++G ++ A  L+ +   E  R D  +++ L++     G  D  +  +EE+K  G+ P+ +
Sbjct: 948  KSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTV 1007

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +YN +++ +G+++R  +  +++ EM + G+SP+  TY +L+   G A   +  + +Y E+
Sbjct: 1008 SYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEEL 1067

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            +  G++ SV  YN L+   +  G  D+AF +F+ M     C P++ TF+ +
Sbjct: 1068 QLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVV-GCSPNTETFAQL 1117



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 108/250 (43%), Gaps = 1/250 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+      L +  ++   R +   ++  I+  G A   D    +++EM   G  P++I
Sbjct: 247 RRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVI 306

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D +  A +  + K +Y +M  +  SP+  TY +L+  +G+    E     + EM
Sbjct: 307 TYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEM 366

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G    V  Y  L+      G  D AF++  D+ +++   P+  T+++MI       +
Sbjct: 367 EVDGYAPDVVTYTILIEALCKSGDVDRAFDML-DVMTTKGIFPNLHTYNTMICGLLKARR 425

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +   M   G +P  F     I  YGK+      +     + + GI P    C  
Sbjct: 426 LDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNA 485

Query: 338 LLNVMTQTPK 347
            L  + +T +
Sbjct: 486 SLYTLAETGR 495



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 95/191 (49%), Gaps = 2/191 (1%)

Query: 142 NVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           NV+++  K +G+ P + +YN L+D +  +    +   ++++M   G  PN  TY  LL A
Sbjct: 781 NVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDA 840

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           +G+++       +Y EM+ +G + +   +N +++        ++A +++ ++ S +   P
Sbjct: 841 HGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGD-FSP 899

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
              T+  +I      G+  +A  +F EML+ G  PN  +   LI  +GK+   D      
Sbjct: 900 TPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELF 959

Query: 321 NRLPELGITPD 331
            ++ + GI PD
Sbjct: 960 KKMVKEGIRPD 970



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 3/252 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG ++ A  L     ++    D    ++LI     AG  D    ++  +K + + P +
Sbjct: 526 SKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTV 585

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL  +G+  +  +   ++  MT++G  PN  T+ SLL    +    +  L ++  
Sbjct: 586 VTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCR 645

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M        V  YNT++      G  D AF  F  MK  +   PD  T  ++I      G
Sbjct: 646 MTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMK--KFLSPDYVTLCTLIPGVVRHG 703

Query: 277 KVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           +V +A  +  E + +A  + N      L++C       ++ +     L    +  DD   
Sbjct: 704 RVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVM 763

Query: 336 GCLLNVMTQTPK 347
             L+ V+ +  K
Sbjct: 764 LPLIKVLCKRKK 775



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%)

Query: 105  AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
            A  L+   +N     D   ++ LI   G AG  D  + +YEE++ +G++P++ TYN L+ 
Sbjct: 1025 ALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIR 1084

Query: 165  TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
                +    Q  +++K+M   G SPN  T+A L   Y RA
Sbjct: 1085 GHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRA 1124



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 82/180 (45%), Gaps = 2/180 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           L+  + + K+    + ++ + T N G+ P   +Y  L+     + + E  L ++ +MK  
Sbjct: 766 LIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSA 825

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   +   YN LL         ++ ++++ +M+S   C+P++ T + +I+       +++
Sbjct: 826 GTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRS-RGCEPNAITHNIIISALVKSNNLNK 884

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A  ++ E++   F P       LI    KA R++  ++    + + G  P+      L+N
Sbjct: 885 ALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILIN 944



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 102/270 (37%), Gaps = 63/270 (23%)

Query: 120 DPNAFSTLIKLYGTAGNF----DGC----------------LNVYEEMKAIGVKPNMITY 159
           DPN+  +  K+     NF    D C                + V++ M+   +  N+ TY
Sbjct: 110 DPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQKKVIYRNLTTY 169

Query: 160 NNLLDTM----GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             +   +    G  + P+ ++    +MT+ G   N  +Y  L+       +  + L VY+
Sbjct: 170 MTIFKALSIKGGIGRAPFALR----KMTEVGFILNAYSYNGLIHLL-LPGFCNEALKVYK 224

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS--------------------- 254
            M  +GM+ S+  Y+ L+      G T +   + E+MKS                     
Sbjct: 225 RMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRAR 284

Query: 255 -------------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
                         E C PD  T++ +I      GK+ +A+ ++ +M  +   P+     
Sbjct: 285 RIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYI 344

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +L+  +GK    + V R  N +   G  PD
Sbjct: 345 TLMDKFGKVGDLETVKRFWNEMEVDGYAPD 374


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 120/233 (51%), Gaps = 1/233 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  A   + +   E ++ D   +++LI+ +  AG     L++ ++M+     P++ TY
Sbjct: 373 GRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTY 432

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +L+ +G   R  ++  +  EM   GL PN  TY +L+ +YG ++   +     ++MK 
Sbjct: 433 NIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKS 492

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+Q S ++Y  L    A  G  ++A E+F+ M+  +  + +    + +I      GK  
Sbjct: 493 QGLQPSTSVYCALANSYAKRGLCEQAMEVFKSME-KDGVELNLSMLNLLINAFGVAGKYV 551

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           EA ++F+ +LE G  P++   T+L++   KA++ D V     ++   G TPDD
Sbjct: 552 EAFSVFDYILEVGMSPDVVTYTTLMKALIKAEQLDQVPDVYEQMVRAGCTPDD 604



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 36/270 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG ++ A   +   + E    +   +S L+  Y  A  +DG + + ++M A  +KPN 
Sbjct: 300 SRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQ 359

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             +N L+DT G+  R  Q    + +M   G  P+  T+ SL+ A+ RA    + L + ++
Sbjct: 360 FIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQ 419

Query: 217 MKEKGMQLSVTLYNTLL------------AMCAD-----------VGYTD---------- 243
           M+E+    S+  YN +L            A+  D           V YT           
Sbjct: 420 MQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKR 479

Query: 244 --EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             EA E  + MK S+  QP +  + ++    + RG   +A  +F  M + G E NL +L 
Sbjct: 480 YREASEYLKQMK-SQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLN 538

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            LI  +G A +  +     + + E+G++PD
Sbjct: 539 LLINAFGVAGKYVEAFSVFDYILEVGMSPD 568



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 6/299 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR   +E    L   A +   ++   ++  LI  Y  AG  D     +  MK   V  N 
Sbjct: 265 TRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANA 324

Query: 157 ITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             Y+ L+    R  R W     + K+M  + + PN   +  L+  YG+       +  + 
Sbjct: 325 FIYSRLM-VAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFA 383

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M ++G +  V  +N+L+      G   EA ++ + M+  E C P   T++ ++      
Sbjct: 384 QMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERE-CVPSLHTYNIILNALGWH 442

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-F 334
            +  E   + +EM   G +PN+   T+L+  YG ++R  +    L ++   G+ P    +
Sbjct: 443 NRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVY 502

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGY-VVKLLLEEQDIEGDFKKEATELFNSI 392
           C    +   +   E+  ++ + +EK   +L   ++ LL+    + G +  EA  +F+ I
Sbjct: 503 CALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKY-VEAFSVFDYI 560



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 1/218 (0%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
            E   +D   ++ +I  Y  AG+ D        M+A  + P++ +Y++L++T+   +R  
Sbjct: 177 QEGLEMDTKLYNDVINAYCRAGDPDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRLD 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             +  Y EM       N  T  +LL AY R    E    + ++ ++ G++LS   Y  L+
Sbjct: 237 DAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
              +  G  D+A   F +MK  EN   +++ +S ++       +      +  +M  +  
Sbjct: 297 DAYSRAGRLDQAKAAFHNMK-VENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNI 355

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +PN F+   LI  YGK  R    +R   ++ + G  PD
Sbjct: 356 KPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPD 393



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 102/211 (48%), Gaps = 2/211 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           +++++K +GV P  + YN ++ T  R  R      +  +M  +G  P+   Y  + +A  
Sbjct: 100 LFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRGSGFQPDNVNYTLVFQACA 159

Query: 203 RARYGEDTLS-VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           + R G D +S V   ++++G+++   LYN ++      G  D+AF+    M++ +   PD
Sbjct: 160 KKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPDKAFQYMGLMQACD-LVPD 218

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             ++SS+I       ++ +AEA + EM    ++ NL  L +L+  Y +    + V + + 
Sbjct: 219 VRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQ 278

Query: 322 RLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
              + G+       G L++  ++  + +  K
Sbjct: 279 DAEDAGLKLSTFSYGLLIDAYSRAGRLDQAK 309


>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
 gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
          Length = 390

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 123/243 (50%), Gaps = 2/243 (0%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
            ++ + +S L+K    +G+     +V+  M +   K +   + ++L+ +  A++  +   
Sbjct: 109 HLNRSVYSYLVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAID 168

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +   M + G++ +   Y  +  A G+ +      S+Y +MK  G+   V  YN +++   
Sbjct: 169 LLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFG 228

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            VG  D+A E+FE+M  S +C+PD  T++SMI      G + EA  +F +M E G++P++
Sbjct: 229 RVGLVDKASELFEEMDDS-SCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDV 287

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356
           F  + LI+C+GK+ + D      + +   G  P+      LL+ + +  K  E  KL E 
Sbjct: 288 FTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYET 347

Query: 357 VEK 359
           +++
Sbjct: 348 LKQ 350



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 115/234 (49%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+   A  ++ R  +   + D +AF ++++    A      +++   M   G+  ++ 
Sbjct: 124 KSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEKGITTDVG 183

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +   +G+ K+   + ++Y +M  NG++P+  TY  ++ ++GR    +    ++ EM
Sbjct: 184 MYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEM 243

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +   +  V  YN+++      G  DEA  +F+DM+  +   PD +T+S +I       K
Sbjct: 244 DDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQ-EKGYDPDVFTYSILIECFGKSNK 302

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V  A ++F+EM+  G  PN+     L+ C  +  +T +  +    L + G+ PD
Sbjct: 303 VDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYETLKQQGLAPD 356



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 1/159 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           LYD+ +      D   ++ +I  +G  G  D    ++EEM     KP++ITYN++++ +G
Sbjct: 204 LYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLG 263

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     +   ++K+M + G  P+  TY+ L+  +G++   +   S++ EM  +G   ++ 
Sbjct: 264 KNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIV 323

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            YN LL      G T EA +++E +K  +   PDS T+S
Sbjct: 324 TYNILLDCLERHGKTREAHKLYETLK-QQGLAPDSITYS 361



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 90/172 (52%), Gaps = 1/172 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           ++Y++MKA GV P++ TYN ++ + GR     +   +++EM D+   P+  TY S++   
Sbjct: 203 SLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCL 262

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           G+    ++   ++++M+EKG    V  Y+ L+         D A  +F++M  ++ C P+
Sbjct: 263 GKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEM-IAQGCVPN 321

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
             T++ ++      GK  EA  ++  + + G  P+    + L +   ++QRT
Sbjct: 322 IVTYNILLDCLERHGKTREAHKLYETLKQQGLAPDSITYSILERLESRSQRT 373



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 60/108 (55%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ A  L+   + + +  D   +S LI+ +G +   D   ++++EM A G  PN++
Sbjct: 264 KNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIV 323

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           TYN LLD + R  +  +   +Y+ +   GL+P+  TY+ L R   R++
Sbjct: 324 TYNILLDCLERHGKTREAHKLYETLKQQGLAPDSITYSILERLESRSQ 371



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 12/217 (5%)

Query: 120 DPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DP+A++   LI++ G AG     ++  EEM + G   N+I YN +++ +G+ K   +   
Sbjct: 7   DPDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKAIF 66

Query: 178 IYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
           +  +M ++   PN  TY+ +L      G+     + L +          L+ ++Y+ L+ 
Sbjct: 67  MLSKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEILDICSG------HLNRSVYSYLVK 120

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                G+  EA  +F  M SS   + D   F SM+       K +EA  + + M E G  
Sbjct: 121 ALCKSGHASEAHSVFCRMWSSHE-KGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEKGIT 179

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ +   +    GK ++   +    +++   G+ PD
Sbjct: 180 TDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPD 216



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 65/135 (48%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  L++   +   + D   ++++I   G  G+ D    ++++M+  G  P++ 
Sbjct: 229 RVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVF 288

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G++ +     +++ EM   G  PN  TY  LL    R     +   +Y  +
Sbjct: 289 TYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYETL 348

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y+ L
Sbjct: 349 KQQGLAPDSITYSIL 363



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 4/185 (2%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           MK     P+  TY  L+   G+A +  +  +  +EM   G   N   Y +++ A G+ + 
Sbjct: 1   MKQNNCDPDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKM 60

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            +  + +  +M E   Q +   Y+ +L + A  G      EI +      N       +S
Sbjct: 61  VDKAIFMLSKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEILDICSGHLN----RSVYS 116

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            ++      G  SEA ++F  M  +  + +     S+++    A++T + +  L+ +PE 
Sbjct: 117 YLVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEK 176

Query: 327 GITPD 331
           GIT D
Sbjct: 177 GITTD 181



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           NC PD++T++ +I +    GK ++  +   EM+  G   NL    ++I+  GK +  D  
Sbjct: 5   NCDPDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKA 64

Query: 317 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 376
           +  L+++ E    P+      +L+V+      +L +L E ++  +  L   V   L +  
Sbjct: 65  IFMLSKMIESDCQPNQFTYSIMLDVLATGG--QLHRLNEILDICSGHLNRSVYSYLVKAL 122

Query: 377 IEGDFKKEATELF----NSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL----GLTLE 428
            +     EA  +F    +S  K  + A+ + L  LC N      A  LL +    G+T +
Sbjct: 123 CKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALC-NAEKTAEAIDLLHMMPEKGITTD 181

Query: 429 V 429
           V
Sbjct: 182 V 182


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 1/240 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV  A  L D  +      D   ++ L+  +   G  +     ++EM   G+ PN ++Y
Sbjct: 457 GNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSY 516

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+D   +  +     ++ K M + G +PN  +Y +++    +     +   +  +M E
Sbjct: 517 TALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVE 576

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+  +V  Y TL+      G T  AF+IF DM+  + C P+ +T+SS+I      GK  
Sbjct: 577 QGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRK-CLPNLYTYSSLIYGLCQEGKAD 635

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EAE +  EM   G  P+    TSLI  +    R D     L R+ ++G  P+ R    LL
Sbjct: 636 EAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLL 695



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 3/222 (1%)

Query: 112 ARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           AR +K    PN   ++ LI      G  +  + +Y +M   G+ PN +TYN L++ +   
Sbjct: 327 ARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 386

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
            R      I+  M  +G   N  TY  +++        E  + ++ +M + G   +V  Y
Sbjct: 387 GRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTY 446

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           NTL+      G  + A  + + MK +  C+PD WT++ +++  S  GK+  A   F EM+
Sbjct: 447 NTLINGYLTKGNVNNAARLLDLMKEN-GCEPDEWTYNELVSGFSKWGKLESASFYFQEMV 505

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           E G  PN    T+LI  + K  + D  +  L R+ E+G  P+
Sbjct: 506 ECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPN 547



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 5/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R  N+++AFG++DR   E    DPN+  +STLI      G  D  L++ EEM   G++P 
Sbjct: 245 RNRNLDLAFGVFDRMVKEGC--DPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPT 302

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY   +  +   +   +   +   M   G  PN  TY +L+    R    E  + +Y 
Sbjct: 303 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 362

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M ++G+  +   YN L+      G    A +IF  M+       ++ T++ +I      
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME-GHGSLANTQTYNEIIKGLCLG 421

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           G + +A  +F +ML+ G  P +    +LI  Y      ++  R L+ + E G  PD+
Sbjct: 422 GDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 478



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 101/203 (49%), Gaps = 1/203 (0%)

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           +G  N+Y++M   G++P+++T+N L++ + +  +  + + I  ++    LSP+  TY SL
Sbjct: 180 EGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSL 239

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           +  + R R  +    V+  M ++G   +   Y+TL+    + G  DEA ++ E+M   + 
Sbjct: 240 ILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEM-IEKG 298

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            +P  +T++  IT         EA  +   M + G  PN+   T+LI    +  + +  +
Sbjct: 299 IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAI 358

Query: 318 RALNRLPELGITPDDRFCGCLLN 340
              +++ + G+ P+      L+N
Sbjct: 359 GLYHKMLKEGLVPNTVTYNALIN 381



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           VE A  LY +  N   +     F+TLI +    G       +  ++    + P++ TY +
Sbjct: 179 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTS 238

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+    R +       ++  M   G  PN  TY++L+         ++ L +  EM EKG
Sbjct: 239 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKG 298

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +V  Y   +     + + +EA E+   MK    C+P+  T++++I+  S  GK+  A
Sbjct: 299 IEPTVYTYTLPITALCAIEHEEEAIELVARMK-KRGCRPNVQTYTALISGLSRLGKLEVA 357

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQ--CYG 308
             ++++ML+ G  PN     +LI   C G
Sbjct: 358 IGLYHKMLKEGLVPNTVTYNALINELCVG 386



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 5/175 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           ++ G V++A  L  R   E+   +PN  +++ +I        F     + ++M   G+ P
Sbjct: 524 SKDGKVDIALSLLKRM--EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLP 581

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N+ITY  L+D + R  R      I+ +M      PN  TY+SL+    +    ++   + 
Sbjct: 582 NVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILL 641

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +EM+ KG+      + +L+     +G  D AF +   M     C+P+  T+S ++
Sbjct: 642 KEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM-VDMGCKPNYRTYSVLL 695



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +V     E++  G   +  +  +LL    +    E   ++Y++M   G+Q S+  +NTL+
Sbjct: 146 RVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI 205

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAG 292
            + +  G   EA E+        +  PD +T++S+I +  CR + +  A  +F+ M++ G
Sbjct: 206 NILSKKGKVREA-ELILSQIFQYDLSPDVFTYTSLI-LGHCRNRNLDLAFGVFDRMVKEG 263

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +PN    ++LI       R D+ +  L  + E GI P
Sbjct: 264 CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 143/301 (47%), Gaps = 7/301 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  V++A   +  A   +   D   F+T+I      G      +V +++KA G+ P++ T
Sbjct: 169 AKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVAT 228

Query: 159 YNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           YN+L+D     G A   + V  + KEM + G+SP   T+  L+  Y +       + V+ 
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFE 288

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK++G+  SV  YN+L++     G  +E  ++ E+M+      P+  TF  ++     +
Sbjct: 289 EMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL-GLSPNEITFGCVLKGFCKK 347

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G +++A    + M E   EP++ + T LI  Y +  + +D +     + + GI+P+    
Sbjct: 348 GMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTY 407

Query: 336 GCLLNVMTQTP--KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
            CL+   +++   +   G L E  EK          +L+     +G+ +K A +L + +S
Sbjct: 408 NCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRK-AVKLLDEMS 466

Query: 394 K 394
           +
Sbjct: 467 E 467



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 38/226 (16%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P A  F  LI  Y    N    + V+EEMK  G+  +++TYN+L+  +    +  +  
Sbjct: 260 ISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGV 319

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAY---------------------------------GR 203
            + +EM D GLSPN  T+  +L+ +                                 G 
Sbjct: 320 KLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGY 379

Query: 204 ARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            R G  ED ++V   M +KG+  +VT YN L+   +  G    A  + ++MK  +  + D
Sbjct: 380 RRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMK-EKGIEAD 438

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
             T++ +I    C+G+V +A  + +EM E G EPN     ++IQ +
Sbjct: 439 VVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGF 484



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 26/268 (9%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G VE    L +    E   + PN   F  ++K +   G      +  + M    V+P+++
Sbjct: 313 GKVEEGVKLMEEM--EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 370

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D   R  +      + + M   G+SPN  TY  L+  + R+        +  EM
Sbjct: 371 IYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG++  V  YN L+      G   +A ++ ++M S    +P+  T++++I     +G 
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGN 489

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR--------------- 322
           +  A  +   M +     N+      I+ + +  + D+    LN                
Sbjct: 490 IKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYET 549

Query: 323 ----LPELGITPDDRFCGCLLNVMTQTP 346
               + E G TPD R  GC ++  ++ P
Sbjct: 550 IKEGMMEKGYTPDIR--GCTVSQASENP 575



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 23/203 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R G +E A  + +     K  I PN   ++ LI  +  +G++     + +EMK  G++ +
Sbjct: 381 RLGKMEDAMAVKEAM--AKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEAD 438

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++TYN L+  +       +   +  EM++ GL PN  TY ++++ +      +    +  
Sbjct: 439 VVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRT 498

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSC 274
            M++   + +V  YN  +     +G  DEA ++  +M   + C  P+  T+         
Sbjct: 499 RMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEML--DKCLVPNGITY--------- 547

Query: 275 RGKVSEAEAMFNEMLEAGFEPNL 297
                  E +   M+E G+ P++
Sbjct: 548 -------ETIKEGMMEKGYTPDI 563



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 12/194 (6%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGED 209
           +P+  + N LL  +  AKR    +  ++      +SP+   +NT  S L   G+ R   D
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ----PDSWTF 265
              V +++K  G+  SV  YN+L+      G     + +  DM   E  +    P + TF
Sbjct: 213 ---VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV--DMLLKEMVEAGISPTAVTF 267

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
             +I         + A  +F EM + G   ++    SLI       + ++ V+ +  + +
Sbjct: 268 GVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMED 327

Query: 326 LGITPDDRFCGCLL 339
           LG++P++   GC+L
Sbjct: 328 LGLSPNEITFGCVL 341



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 6/151 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R+G+   A GL D  + +    D   ++ LI      G     + + +EM  +G++PN 
Sbjct: 415 SRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNH 474

Query: 157 ITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           +TYN ++      G  K  ++++T  ++         +N +       G+     D L+ 
Sbjct: 475 LTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLN- 533

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
             EM +K +  +   Y T+     + GYT +
Sbjct: 534 --EMLDKCLVPNGITYETIKEGMMEKGYTPD 562


>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
           DEFECTIVE 2217; Flags: Precursor
 gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
 gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/457 (21%), Positives = 205/457 (44%), Gaps = 47/457 (10%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G ++ AF L+ + +  K R   + FS+L+   G AG  D  + VY EM+  G +P+ 
Sbjct: 324 AKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSA 383

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             + +L+D+  +A +      ++ EM  +G  PN+  Y  ++ ++ ++   E  ++V+++
Sbjct: 384 TMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKD 443

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G   + + Y+ LL M A  G  D A +I+  M ++   +P   ++ S++T+ + + 
Sbjct: 444 MEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSM-TNAGLRPGLSSYISLLTLLANKR 502

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD---- 332
            V  A  +  EM   G+  ++   + ++  Y K    D  ++ L  +   GI  ++    
Sbjct: 503 LVDVAGKILLEMKAMGYSVDV-CASDVLMIYIKDASVDLALKWLRFMGSSGIKTNNFIIR 561

Query: 333 -RFCGCLLNVMTQTPKEELGKLVECVEKSN-----SKLGYVVKLLLEEQDIE-------- 378
             F  C+ N +  + +  L  LV    K +     S L ++V+   E+++ +        
Sbjct: 562 QLFESCMKNGLYDSARPLLETLVHSAGKVDLVLYTSILAHLVRCQDEDKERQLMSILSAT 621

Query: 379 ---------GDF-----KKEAT-----ELFNSISKDVKKA----YCNCLIDLCVNLNLLE 415
                    G F     +K+       E +  I  ++++     + N L++  V +  + 
Sbjct: 622 KHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGIDYELEEGAARYFVNVLLNYLVLMGQIN 681

Query: 416 NACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 474
            A  + ++    +++   I       WSL +++LS+GAAL A+   ++   K +      
Sbjct: 682 RARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVV 741

Query: 475 PPLLGINTGHGKHKYSDKGLASV---FESHLKELNAP 508
           P  + + TG        + L+SV   FE     L AP
Sbjct: 742 PRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAP 778



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +Y+        +D + +  +I     +G  D    ++++MK   ++P+   +++L+D
Sbjct: 297 AFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVD 356

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +MG+A R      +Y EM   G  P+   + SL+ +Y +A   +  L ++ EMK+ G + 
Sbjct: 357 SMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRP 416

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +  LY  ++   A  G  + A  +F+DM+ +    P   T+S ++ + +  G+V  A  +
Sbjct: 417 NFGLYTMIIESHAKSGKLEVAMTVFKDMEKA-GFLPTPSTYSCLLEMHAGSGQVDSAMKI 475

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +N M  AG  P L    SL+      +  D   + L  +  +G + D
Sbjct: 476 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVD 522



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 153/334 (45%), Gaps = 10/334 (2%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  +A  +E+AF  + +A+    +ID   ++ L+ L+   G       +YE M+      
Sbjct: 252 YLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLL 311

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  TY  ++ ++ ++ R      ++++M +  L P+++ ++SL+ + G+A   + ++ VY
Sbjct: 312 DGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVY 371

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM+  G + S T++ +L+   A  G  D A  ++++MK S   +P+   ++ +I   + 
Sbjct: 372 MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKS-GFRPNFGLYTMIIESHAK 430

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            GK+  A  +F +M +AGF P     + L++ +  + + D  ++  N +   G+ P    
Sbjct: 431 SGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPG--- 487

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK------LLLEEQDIEGDFKKEATEL 388
               ++++T    + L  +   +      +GY V       L++  +D   D   +    
Sbjct: 488 LSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKDASVDLALKWLRF 547

Query: 389 FNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
             S            L + C+   L ++A  LLE
Sbjct: 548 MGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLE 581



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 109/220 (49%), Gaps = 1/220 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           NA++ +I+    A   +     +++ +  G K +  TYNNL+        P++   IY+ 
Sbjct: 244 NAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYES 303

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M       + +TY  ++ +  ++   +    ++++MKE+ ++ S +++++L+      G 
Sbjct: 304 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGR 363

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D + +++ +M+   + +P +  F S+I   +  GK+  A  +++EM ++GF PN  + T
Sbjct: 364 LDTSMKVYMEMQGFGH-RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYT 422

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
            +I+ + K+ + +  +     + + G  P      CLL +
Sbjct: 423 MIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEM 462



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 126/273 (46%), Gaps = 16/273 (5%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARYGEDTLSVYR 215
           Y  L D + + +    ++++++EM  +  S    ++N Y  +++   +A   E     ++
Sbjct: 208 YVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFK 267

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           + +E G ++    YN L+ +  + G   +AFEI+E M+ +++   D  T+  +I   +  
Sbjct: 268 KAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLL-DGSTYELIIPSLAKS 326

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G++  A  +F +M E    P+  V +SL+   GKA R D  ++    +   G  P     
Sbjct: 327 GRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMF 386

Query: 336 GCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
             L++   +  K +   +L + ++KS    G+     L    IE   K    E+  ++ K
Sbjct: 387 VSLIDSYAKAGKLDTALRLWDEMKKS----GFRPNFGLYTMIIESHAKSGKLEVAMTVFK 442

Query: 395 DVKKA-------YCNCLIDLCVNLNLLENACKL 420
           D++KA         +CL+++      +++A K+
Sbjct: 443 DMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E     PN  +++T+I  Y + GN +G   + + M+  G++P+  TY +L+  M +  R 
Sbjct: 200 EGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRL 259

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   ++ +M + GL PN  TY +L+  Y      E   S   EM +KG+  SV+ YN L
Sbjct: 260 EEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLL 319

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G   EA ++ ++M+  +   PD+ T++ +I   S  G    A  + NEML  G
Sbjct: 320 VHALFMEGRMGEADDMIKEMR-KKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKG 378

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EP     TSLI    +  R  +      ++ + G++PD
Sbjct: 379 IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 417



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I P+A  ++ LI  Y   GN     +++ EM + G++P  +TY +L+  + R  R  
Sbjct: 341 KKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMK 400

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   +++++ D G+SP+   + +++  +      E    + +EM  K +      +NTL+
Sbjct: 401 EADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM 460

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G  +EA  + ++MK     +PD  +++++I+    RG + +A  + +EML  GF
Sbjct: 461 QGRCREGKVEEARMLLDEMK-XRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGF 519

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            P L    +LI+C  K Q  D     L  +   GI+PDD
Sbjct: 520 NPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDD 558



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y +R GN+E A  + D  R +    D   + +LI      G  +    ++++M  IG+ P
Sbjct: 218 YSSR-GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVP 276

Query: 155 NMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDT 210
           N +TYN L+D     G  +R +  +    EM   G+ P+ +TY  L+ A +   R GE  
Sbjct: 277 NAVTYNTLIDGYCNKGDLERAFSYR---DEMVKKGIMPSVSTYNLLVHALFMEGRMGEAD 333

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             + +EM++KG+      YN L+   +  G    AF++  +M  S+  +P   T++S+I 
Sbjct: 334 -DMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEML-SKGIEPTHVTYTSLIY 391

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + S R ++ EA+ +F ++L+ G  P++ +  ++I  +      +     L  +    + P
Sbjct: 392 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPP 451

Query: 331 DD 332
           D+
Sbjct: 452 DE 453



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 110/233 (47%), Gaps = 5/233 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G++E AF   D    +      + ++ L+      G      ++ +EM+  G+ P+ ITY
Sbjct: 292 GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITY 351

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++   R     +   ++ EM   G+ P   TY SL+    R    ++   ++ ++ +
Sbjct: 352 NILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD 411

Query: 220 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
           +G+   V ++N ++   CA+ G  + AF + ++M   ++  PD  TF++++    CR GK
Sbjct: 412 QGVSPDVIMFNAMIDGHCAN-GNVERAFMLLKEM-DRKSVPPDEVTFNTLMQ-GRCREGK 468

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           V EA  + +EM   G +P+     +LI  YG+     D     + +  +G  P
Sbjct: 469 VEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNP 521



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 13/218 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R GN + AF L++   ++        +++LI +           +++E++   GV P++
Sbjct: 359 SRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDV 418

Query: 157 ITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTL 211
           I +N ++D     G  +R +    + KEM    + P+  T+ +L++  GR R G  E+  
Sbjct: 419 IMFNAMIDGHCANGNVERAFM---LLKEMDRKSVPPDEVTFNTLMQ--GRCREGKVEEAR 473

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            +  EMK +G++     YNTL++     G   +AF + ++M S     P   T++++I  
Sbjct: 474 MLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSI-GFNPTLLTYNALIK- 531

Query: 272 CSCRGKVSE-AEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           C C+ +  + AE +  EM+  G  P+     SLI+  G
Sbjct: 532 CLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMG 569



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           H   G+  ++++ +     ++    E +++T      R G VE A  L D  +    + D
Sbjct: 428 HCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPD 487

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
             +++TLI  YG  G+      V +EM +IG  P ++TYN L+  + + +     + + K
Sbjct: 488 HISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLK 547

Query: 181 EMTDNGLSPNWNTYASLLRAYG 202
           EM + G+SP+ +TY SL+   G
Sbjct: 548 EMVNKGISPDDSTYLSLIEGMG 569



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 33/255 (12%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G  PN  +Y +++  Y      E    +   M+ KG++     Y +L++     G  +EA
Sbjct: 203 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEA 262

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             +F+ M       P++ T++++I     +G +  A +  +EM++ G  P++     L+ 
Sbjct: 263 SGLFDKMVEI-GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 321

Query: 306 CY---GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ---------TPKEELGKL 353
                G+    DD+++ + +    GI PD      L+N  ++            E L K 
Sbjct: 322 ALFMEGRMGEADDMIKEMRK---KGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKG 378

Query: 354 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-----SKDVKKAYCNCLID-L 407
           +E    + + L YV+           +  KEA +LF  I     S DV     N +ID  
Sbjct: 379 IEPTHVTYTSLIYVLS--------RRNRMKEADDLFEKILDQGVSPDV--IMFNAMIDGH 428

Query: 408 CVNLNLLENACKLLE 422
           C N N +E A  LL+
Sbjct: 429 CANGN-VERAFMLLK 442


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 1/238 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +E A  L+       ++ D   F+TL+  Y   G  +   ++ ++MK  G++P++++Y  
Sbjct: 518 MEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGT 577

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++D   +AK   + K    E+ D GL PN   Y +L+  YGR       +     MK  G
Sbjct: 578 IIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNG 637

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +Q +   Y +L+      G  +EA  IF   + + N       ++ MI      GK+ EA
Sbjct: 638 IQPTNVTYGSLMYWMCHAGLVEEAKTIFSQAREN-NVDLGVIGYTIMIQGYCKLGKMVEA 696

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A F EM   G  PN    T+L+  Y K+  +++  +  + +   G+ PD+   G L+
Sbjct: 697 VAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI 754



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 155/336 (46%), Gaps = 19/336 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
            RAG ++ A  ++D  R  +   ++  +++ +IK    AG  D    +  E+   G++P 
Sbjct: 196 VRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPT 255

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGEDTLSVY 214
           ++TYN L+D + ++ R  +   +   M   G++P+  T+  L+    R  R+GE  + V 
Sbjct: 256 VVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGI-VL 314

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           +EM++ G+  +  +YN L+      G+  +A  +F++M   +  +P + T++ +      
Sbjct: 315 QEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEM-VLKKMKPTAVTYNLIAKALCK 373

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ-CYGKAQRTDDVVRALNRLPELGITPDDR 333
            G++  AE +  +ML  G   +  +  +++     + +R + VV   N +   G+ P+D 
Sbjct: 374 EGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDP 433

Query: 334 FCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDI----EGDFKKEATE 387
                +  + +  K  E +G   + + K     G  V L      I    EG + KEAT+
Sbjct: 434 LMTACMRELCKGGKHQEAVGIWFKTLNK-----GLGVNLATSNALIHGLCEGKYMKEATK 488

Query: 388 LFNSI---SKDVKKAYCNCLIDLCVNLNLLENACKL 420
           +  ++     ++     N +I  C   + +E A KL
Sbjct: 489 VIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKL 524



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 1/147 (0%)

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           +R +  +G   S+   N  L      G  D A E+F++M+ S N   + +++++MI    
Sbjct: 173 FRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALC 232

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             GKV     M  E+  AG +P +     L+    K+ R ++  R   R+ + G+TP   
Sbjct: 233 KAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVV 292

Query: 334 FCGCLLNVMTQTPK-EELGKLVECVEK 359
             G L+N + +  +  E+G +++ +E+
Sbjct: 293 TFGILINGLARGERFGEVGIVLQEMEQ 319



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 37/163 (22%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN F  + LI  YG  G+  G ++  E MK+ G++P  +TY +L+  M  A    + K
Sbjct: 603 LKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAK 662

Query: 177 TIY-----------------------------------KEMTDNGLSPNWNTYASLLRAY 201
           TI+                                   +EM   G+SPN  TY +L+ AY
Sbjct: 663 TIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAY 722

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
            ++   E+   ++ EM   G+      Y TL+A C++V   D+
Sbjct: 723 SKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDK 765



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 109/272 (40%), Gaps = 39/272 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A G++ +  N+   ++    + LI              V + M   G++ + I
Sbjct: 444 KGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSI 503

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++    +  +  +   ++ +MT  G  P+  T+ +LL AY      E+T  +  +M
Sbjct: 504 TYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQM 563

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K +G+Q  +  Y T++      G+                                C+ K
Sbjct: 564 KTEGLQPDIVSYGTIID-----GH--------------------------------CKAK 586

Query: 278 -VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + +A+    E+++ G +PN+F+  +LI  YG+       + A+  +   GI P +   G
Sbjct: 587 DIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYG 646

Query: 337 CLLNVMTQTP-KEELGKLVECVEKSNSKLGYV 367
            L+  M      EE   +     ++N  LG +
Sbjct: 647 SLMYWMCHAGLVEEAKTIFSQARENNVDLGVI 678



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 98/271 (36%), Gaps = 39/271 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           ++G VE AF L  + R E+  + P+   F  LI        F     V +EM+ +GV PN
Sbjct: 268 KSGRVEEAFRL--KGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPN 325

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            + YN L+    R     Q   ++ EM    + P   TY  + +A  +    E    +  
Sbjct: 326 EVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILE 385

Query: 216 EMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS- 273
           +M   GM +   L+NT++A +       +    I  +M +      D    + M  +C  
Sbjct: 386 DMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKG 445

Query: 274 --------------------------------CRGK-VSEAEAMFNEMLEAGFEPNLFVL 300
                                           C GK + EA  +   ML  G E +    
Sbjct: 446 GKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITY 505

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +I+   K  + ++ ++    +   G  PD
Sbjct: 506 NIMIRGCCKDSKMEEAIKLHGDMTRRGFKPD 536



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 51/100 (51%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG VE A  ++ +AR     +    ++ +I+ Y   G     +  +EEM++ G+ PN +T
Sbjct: 655 AGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLT 714

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           Y  L+    ++    +   ++ EM  +G+ P+  TY +L+
Sbjct: 715 YTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI 754


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 5/226 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F  +I   G  G  +    ++EEMK  G+KP +  +N LL    R     + ++I  EM 
Sbjct: 319 FVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEME 378

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +GLSP+ +TY  L+ AY      E    + ++M+ + +Q +  +++ +LA   D G   
Sbjct: 379 KSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQ 438

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           + FE+  +MK+S N +PD   ++ MI        +  A   ++ ML  G EP++    +L
Sbjct: 439 KTFEVLREMKNS-NVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTL 497

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           I C+ K    D        + E G  P    C    N+M  +  E+
Sbjct: 498 IDCHRKHGYHDRAAELFEEMQERGYLP----CPTTYNIMINSLGEQ 539



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 5/249 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+++ A  +           D + +  L+  Y   G ++   ++ ++M+A  V+PN  
Sbjct: 363 RKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTF 422

Query: 158 TYNNLLDTMGRAKRPWQVKT--IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            ++ +L +  R +  WQ KT  + +EM ++ + P+ + Y  ++  +G+    +  +  Y 
Sbjct: 423 IFSRILASY-RDRGEWQ-KTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYD 480

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M  +G++  V  +NTL+      GY D A E+FE+M+      P   T++ MI     +
Sbjct: 481 RMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQE-RGYLPCPTTYNIMINSLGEQ 539

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            K  E + +  +M   G  PN+   T+L+  YG + R +D +  L  +   G+ P     
Sbjct: 540 EKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMY 599

Query: 336 GCLLNVMTQ 344
             L+N   Q
Sbjct: 600 NALINAFAQ 608



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 110/232 (47%), Gaps = 1/232 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A   YDR  +E    D   ++TLI  +   G  D    ++EEM+  G  P   TYN 
Sbjct: 472 LDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNI 531

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +++++G  ++  +VK +  +M   GL PN  TY +L+  YG +    D +     MK  G
Sbjct: 532 MINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAG 591

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ S T+YN L+   A  G +++A   +  M  S+  +P     +S+I       +  EA
Sbjct: 592 LKPSATMYNALINAFAQRGLSEQAVNAYRVM-ISDGLRPSLLALNSLINAFGEDRRDIEA 650

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            ++   M E   +P++   T+L++   +  + D V      +   G TPD +
Sbjct: 651 FSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTPDGK 702



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 112/237 (47%), Gaps = 3/237 (1%)

Query: 97  TRAGNVEMAF--GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           TR   +++     LY+   ++K  +D    + +I  +  AG+ +  L     ++A G+ P
Sbjct: 255 TRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNP 314

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
              T+  ++  +G   R  + + I++EM + GL P    + +LL+ Y R    ++  S+ 
Sbjct: 315 KTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESII 374

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM++ G+      Y  L+   A+VG  + A  + + M+ + N QP+++ FS ++     
Sbjct: 375 SEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQME-ARNVQPNTFIFSRILASYRD 433

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           RG+  +   +  EM  +  +P+      +I  +GK    D  +   +R+   GI PD
Sbjct: 434 RGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPD 490



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 114/263 (43%), Gaps = 3/263 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A  +++  +    +    AF+ L+K Y   G+     ++  EM+  G+ P+  TY
Sbjct: 330 GRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTY 389

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+D      R    + + K+M    + PN   ++ +L +Y      + T  V REMK 
Sbjct: 390 GLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKN 449

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             ++     YN ++         D A E ++ M  SE  +PD  T++++I      G   
Sbjct: 450 SNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRML-SEGIEPDVVTWNTLIDCHRKHGYHD 508

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +F EM E G+ P       +I   G+ ++ D+V   L ++   G+ P+      L+
Sbjct: 509 RAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLV 568

Query: 340 NVMTQTPKEELGKLVECVEKSNS 362
           ++   + +      ++C+E   S
Sbjct: 569 DIYGHSGR--FNDAIDCLEAMKS 589



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 129/285 (45%), Gaps = 11/285 (3%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL--SVY 214
           +TYN L+    R     +   +   M  +G   ++  Y+ ++++  R    +  L   +Y
Sbjct: 210 LTYNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLY 269

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            E++   ++L   L N ++   A  G  + A   F  M  +    P + TF ++I+    
Sbjct: 270 EEIESDKIELDGLLLNDIILGFAKAGDPNRAL-YFLSMVQASGLNPKTSTFVAVISALGN 328

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+  EAEA+F EM E G +P +    +L++ Y +     +    ++ + + G++PD+  
Sbjct: 329 HGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHT 388

Query: 335 CGCLLNVMTQTPKEELGK-LVECVEKSNSKLG-YVVKLLLEEQDIEGDFKKEATELFNSI 392
            G L++      + E  + L++ +E  N +   ++   +L      G+++K    L    
Sbjct: 389 YGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMK 448

Query: 393 SKDVK--KAYCNCLIDLCVNLNLLENAC----KLLELGLTLEVYT 431
           + +VK  + + N +ID     N L++A     ++L  G+  +V T
Sbjct: 449 NSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVT 493



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 95/199 (47%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L++  +   +   P  ++ +I   G    +D    +  +M++ G+ PN++
Sbjct: 503 KHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVV 562

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  G + R        + M   GL P+   Y +L+ A+ +    E  ++ YR M
Sbjct: 563 TYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVM 622

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++ S+   N+L+    +     EAF I + MK ++  +PD  T+++++       K
Sbjct: 623 ISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKEND-VKPDVVTYTTLMKALIRVDK 681

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +  A++ EM+ +G  P+
Sbjct: 682 FDKVPAVYEEMILSGCTPD 700



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 114/270 (42%), Gaps = 46/270 (17%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-- 171
           ++K  + P  ++ LI       + +  LN+   M+  G + + I Y+ ++ ++ R  +  
Sbjct: 202 SQKQTLTPLTYNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKID 261

Query: 172 -PWQVKTIYKEMTDN-----------------------------------GLSPNWNTYA 195
            P  ++ +Y+E+  +                                   GL+P  +T+ 
Sbjct: 262 IPL-LQKLYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFV 320

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +++ A G     E+  +++ EMKE G++  +  +N LL   A  G   EA  I  +M+ S
Sbjct: 321 AVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKS 380

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQR 312
               PD  T+  ++   +  G+   A  +  +M     +PN F+ + ++  Y   G+ Q+
Sbjct: 381 -GLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQK 439

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           T +V+R +       + PD  F   +++  
Sbjct: 440 TFEVLREMK---NSNVKPDRHFYNVMIDTF 466



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 3/114 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A   Y    ++  R    A ++LI  +G         ++ + MK   VKP+++TY
Sbjct: 610 GLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTY 669

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
             L+  + R  +  +V  +Y+EM  +G +P+    A L  A    RY + TLS+
Sbjct: 670 TTLMKALIRVDKFDKVPAVYEEMILSGCTPDGKARAMLRSAL---RYMKRTLSL 720


>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 863

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 179/402 (44%), Gaps = 12/402 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L +++G  G F   + ++++M    V+P++ T  N++   GR       + + 
Sbjct: 384 DTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVL 443

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +T  G+ P    Y  L+ A G A   E+    +  M E G   ++  YN L    A  
Sbjct: 444 DYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKG 503

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLF 298
           G   EA  IF  M ++   Q D  +F ++I    C+G ++ +A   + EM ++ F P+  
Sbjct: 504 GLFQEAEAIFSRMTNNAAIQKDKDSFDALIE-AYCQGAQLDDAVKAYMEMRKSRFNPDER 562

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 357
            L  ++  Y  A   D+       L  +   P       +L++  +  +  +   L+E +
Sbjct: 563 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 622

Query: 358 E--KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNL 413
           +  +++S    +  ++  E D + +++     L NS  +  D    + N L+D+      
Sbjct: 623 KTNRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQ 682

Query: 414 LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEE 473
              A ++L+  L   ++ ++   +   WS  +  +S+G +L A+ +W+N L   L+  E+
Sbjct: 683 KGRAARVLDQALKYGLFPELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDED 742

Query: 474 FPPLLGINTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 510
            P L  +    G+ + S   +GL  A V  S L + L++ FH
Sbjct: 743 LPQLASVVVLRGQMEKSTVTRGLPIAKVVYSFLNDTLSSSFH 784



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 103/231 (44%), Gaps = 5/231 (2%)

Query: 103 EMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           +M  GL+   R++     R D   ++TL+         D    +   M   GV P+  +Y
Sbjct: 225 DMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASY 284

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +++D    A    +V  ++ EM+  G +P+ + Y  L+ A+       + ++V R+M+ 
Sbjct: 285 RHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQA 344

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +   Y  LL +    G  D   E+F +M+++    PD+ T++ +  +    G   
Sbjct: 345 DGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT--VPPDTATYNVLFRVFGDGGFFK 402

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           E   +F +ML +  EP++    +++   G+    +D    L+ +   G+ P
Sbjct: 403 EVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVP 453



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 9/227 (3%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW----QVKTI 178
           ++++LI  Y      +    + ++MKA GV P   TYN +L    RA  P      +  +
Sbjct: 171 SYTSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLGL 230

Query: 179 YKEMTDN---GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + EM  +    + P+  TY +LL A       + +  + R M E G+      Y  ++  
Sbjct: 231 FAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDA 290

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            A  G      E+F +M ++ +  PD   +  ++   +  G  +EA A+  +M   G  P
Sbjct: 291 FAGAGNLSRVAELFAEMSATGHT-PDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPP 349

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
                  L+  YG+  R D  VR L R     + PD      L  V 
Sbjct: 350 TAATYRVLLDLYGRQGRFDG-VRELFREMRTTVPPDTATYNVLFRVF 395



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 134/352 (38%), Gaps = 51/352 (14%)

Query: 97  TRAGNVEMAFGLYDRARNEKW-RIDPNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVK 153
           +R G+ + +  L+   + + W R D +  + +I + G  G    D CL V+ ++      
Sbjct: 109 SRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDL------ 162

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
                             P + +T               +Y SL+ AY R    E+   +
Sbjct: 163 ------------------PSESRTAL-------------SYTSLIAAYARNALHEEAREL 191

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE----IFEDMKS--SENCQPDSWTFSS 267
             +MK  G+  +   YNT+LA CA        F+    +F +M+   S + +PD  T+++
Sbjct: 192 LDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNT 251

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           ++   + R    ++E +   MLEAG  P+      ++  +  A     V      +   G
Sbjct: 252 LLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATG 311

Query: 328 ITPD-DRFCGCL-LNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 385
            TPD   + G +  + +     E +  L +             ++LL+    +G F    
Sbjct: 312 HTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDG-V 370

Query: 386 TELFNSISKDV--KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 435
            ELF  +   V    A  N L  +  +    +   +L +  L  EV  DI +
Sbjct: 371 RELFREMRTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDT 422


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G V  A   ++        ID + ++ ++            + + E++ A G  P + 
Sbjct: 142 KSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIA 201

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL+ + +  R  +   + +++ DNG +P+  TY SL+   G+ +   +   +++EM
Sbjct: 202 TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 261

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+ L    Y  L+      G   +A  +++ M +S+ C PD  T S+MI      G+
Sbjct: 262 ALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTM-TSQGCVPDVVTLSTMIDGLCKAGR 320

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  A  +F  M   G  PN  V ++LI    KA++ D  +  L ++ +   TPD
Sbjct: 321 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 374



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 130/297 (43%), Gaps = 13/297 (4%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L+         +D   ++ LI+    AG      +VY+ M + G  P+++T + ++D
Sbjct: 254 AYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID 313

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A R      I+K M   GL+PN   Y++L+    +AR  +  L +  +MK+     
Sbjct: 314 GLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 373

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               YN L+      G  + A   F++M  +  C+PD +T++ +++     G    A  +
Sbjct: 374 DTITYNILIDGLCKSGDVEAARAFFDEMLEA-GCKPDVYTYNILVSGFCKAGNTDAACGV 432

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           F++M  +   PN+    +LI    K ++          + E G  PD      L++ + +
Sbjct: 433 FDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCK 492

Query: 345 TPKEELGKLV------ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           + K E G ++        V  S ++   +  L       + +   EA  LFN+I K+
Sbjct: 493 SGKLEGGCMLFDEMERSGVANSQTRTRLIFHL------CKANRVDEAVSLFNAIRKE 543



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 108/234 (46%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  L  +  +     D   +++LI   G          +++EM   G+  + +
Sbjct: 212 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV 271

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+  + +A +  Q  ++YK MT  G  P+  T ++++    +A      + +++ M
Sbjct: 272 CYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSM 331

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+  +  +Y+ L+         D A E+   MK +  C PD+ T++ +I      G 
Sbjct: 332 EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA-FCTPDTITYNILIDGLCKSGD 390

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V  A A F+EMLEAG +P+++    L+  + KA  TD      + +     +P+
Sbjct: 391 VEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPN 444



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 2/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +  A  ++          +   +S LI     A   D  L +  +MK     P+ I
Sbjct: 317 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 376

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D + ++      +  + EM + G  P+  TY  L+  + +A   +    V+ +M
Sbjct: 377 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDM 436

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
                  +V  Y TL++         +A   F+ MK    C PDS+ +SS++      GK
Sbjct: 437 SSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMK-ERGCPPDSFVYSSLVDGLCKSGK 495

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +     +F+EM  +G   N    T LI    KA R D+ V   N + + G+
Sbjct: 496 LEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM 545



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+VE A   +D       + D   ++ L+  +  AGN D    V+++M +    PN++
Sbjct: 387 KSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVV 446

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  + + ++  +    ++ M + G  P+   Y+SL+    ++   E    ++ EM
Sbjct: 447 TYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM 506

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           +  G+  S T    +  +C      DEA  +F  ++      P  + ++S+I+
Sbjct: 507 ERSGVANSQTRTRLIFHLC-KANRVDEAVSLFNAIRKEG--MPHPYAYNSIIS 556



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 111/264 (42%), Gaps = 37/264 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-IGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           D   ++ LI  Y  A   +    V  EM+   GV P++ T+N +L  + ++ +       
Sbjct: 93  DVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDH 152

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++  T NG + + +TY +++    + +  +D +++  ++   G   ++  YN LL     
Sbjct: 153 FETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCK 212

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMI---------------------------TI 271
           +G  +EA ++   +  +  C PD  T++S+I                           T+
Sbjct: 213 MGRLEEAIDLLRKIVDN-GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV 271

Query: 272 CSC--------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           C           GK+ +A +++  M   G  P++  L+++I    KA R    VR    +
Sbjct: 272 CYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSM 331

Query: 324 PELGITPDDRFCGCLLNVMTQTPK 347
              G+ P++     L++ + +  K
Sbjct: 332 EARGLAPNEVVYSALIHGLCKARK 355



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 3/199 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ LI     +G+ +     ++EM   G KP++ TYN L+    +A        ++
Sbjct: 374 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVF 433

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M+ +  SPN  TY +L+    + R        ++ MKE+G      +Y++L+      
Sbjct: 434 DDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKS 493

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  +    +F++M+ S     +S T + +I       +V EA ++FN + + G  P+ + 
Sbjct: 494 GKLEGGCMLFDEMERSG--VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYA 550

Query: 300 LTSLIQCYGKAQRTDDVVR 318
             S+I    K+ + +   R
Sbjct: 551 YNSIISTLIKSAKVNPCTR 569


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 17/325 (5%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   +S  I      G ++  +++ +EM A+G+ P++ITY+ ++D   +  +     
Sbjct: 252 VKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAF 311

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM   G+  N  TY+ ++ A  +    E+ +++ REM+E G+   V  Y++ ++ C
Sbjct: 312 RLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISAC 371

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           A  G  +EA  +  +M   E   P++ ++  +I+ C+ RG+  EA  +  EM   G  P+
Sbjct: 372 AKKGQWEEAVGLLREMP-MEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPD 430

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
           +   ++ I    +A R +  +  L  +P  G+TP+       ++   +T + ++   VE 
Sbjct: 431 VINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIA--VEL 488

Query: 357 VEKSNSKLGYVVKLLLEEQDIE----GDFKKEATELF-----NSISKDVKKAYCNCLIDL 407
           + +  +  G    ++     I     G   +EA +LF       I+ DV    CN  I+ 
Sbjct: 489 LREMPAH-GLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDV--VSCNTAINA 545

Query: 408 CVNLNLLENACKLLELGLTLEVYTD 432
           C      E A  +L    T+ +  D
Sbjct: 546 CAQGGWWEEALDVLGEMPTMGLVPD 570



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 5/237 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKP 154
            + G  E A GL      E   + PNA S  I +   A  G +   +++ +EM+A GV P
Sbjct: 372 AKKGQWEEAVGLLREMPMEG--VTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPP 429

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++I Y+  +D   +A R  Q   + +EM   GL+PN  +Y S + A  +    +  + + 
Sbjct: 430 DVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELL 489

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           REM   G+   V  Y+ ++A CA     +EA ++F +M+  +   PD  + ++ I  C+ 
Sbjct: 490 REMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQ-RQGITPDVVSCNTAINACAQ 548

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G   EA  +  EM   G  P+     + I    K  R  +++  L  +  +G+TPD
Sbjct: 549 GGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPD 605



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 34/242 (14%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +S  I     A  ++  L +  EM A G+ PN+I+YN+ +D   +  R      + +EM 
Sbjct: 434 YSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMP 493

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +GL+P+  TY++++ +    R  E+ L ++REM+ +G+   V   NT +  CA  G+ +
Sbjct: 494 AHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWE 553

Query: 244 EAFEIFEDMK----------------------------------SSENCQPDSWTFSSMI 269
           EA ++  +M                                   S+    PD+ ++   +
Sbjct: 554 EALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAM 613

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           + CS  G   EA  +  +ML  G  P++    S I    K  R  +    L ++P  G+ 
Sbjct: 614 SACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLA 673

Query: 330 PD 331
           PD
Sbjct: 674 PD 675



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 128/279 (45%), Gaps = 12/279 (4%)

Query: 53  SSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRA 112
           S+ P +  ++     G+    P S++       +A+  + K Y    G+   A  + DR 
Sbjct: 129 SALPRQQRKSKADKGGRQAGMPMSHL-------KATLREAKQY----GDWRKALDVLDRM 177

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           + +  + D   +S+ I   G A  ++  + +   M A G  P+++TY++ +    +  R 
Sbjct: 178 QEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAKVSRW 237

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   + + M   G+ PN   Y++ + A  +    E  + + +EM   G+   V  Y+T+
Sbjct: 238 KEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTV 297

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +  CA  G  + AF +  +M  ++    +  T+S +I  C+  G+  EA A+  EM E G
Sbjct: 298 IDACAKRGQWEPAFRLLMEMP-TKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENG 356

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             P++   +S I    K  + ++ V  L  +P  G+TP+
Sbjct: 357 VAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPN 395



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 93/209 (44%), Gaps = 1/209 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +S +I        ++  L+++ EM+  G+ P++++ N  ++   +     +   +  EM 
Sbjct: 504 YSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMP 563

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL P+  +Y + + A  +    ++ + + REM   G+      Y   ++ C+  G   
Sbjct: 564 TMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWK 623

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +  DM +     PD  T++S I  C+  G+  EA  +  +M   G  P++    + 
Sbjct: 624 EALVLLRDMLAV-GLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAA 682

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDD 332
           I   G   +    V  L  +  LG++P++
Sbjct: 683 IDACGNGDQWGTAVEVLFEMRALGVSPNE 711



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 4/199 (2%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P+  S  T I      G ++  L+V  EM  +G+ P+ I+Y   +D   +  R  ++ 
Sbjct: 532 ITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEII 591

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM+  GL+P+  +Y   + A       ++ L + R+M   G+   V  YN+ +  C
Sbjct: 592 DLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINAC 651

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           A  G   EA  +   M +     PD  +F++ I  C    +   A  +  EM   G  PN
Sbjct: 652 AKGGRWKEATVLLRQMPTF-GLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPN 710

Query: 297 -LFVLTSLIQCYGKAQRTD 314
               LT++  C    ++ D
Sbjct: 711 EATYLTAMYACKRCGEKDD 729


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 1/238 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +E A  L+       ++ D   F+TL+  Y   G  +   ++ ++MK  G++P++++Y  
Sbjct: 290 MEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGT 349

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++D   +AK   + K    E+ D GL PN   Y +L+  YGR       +     MK  G
Sbjct: 350 IIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNG 409

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +Q +   Y +L+      G  +EA  IF   + + N       ++ MI      GK+ EA
Sbjct: 410 IQPTNVTYGSLMYWMCHAGLVEEAKTIFSQAREN-NVDLGVIGYTIMIQGYCKLGKMVEA 468

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A F EM   G  PN    T+L+  Y K+  +++  +  + +   G+ PD+   G L+
Sbjct: 469 VAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI 526



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 2/215 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E  F L D+ + E  + D  ++ T+I  +  A +         E+   G+KPN+  Y
Sbjct: 323 GKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIY 382

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+   GR           + M  NG+ P   TY SL+     A   E+  +++ + +E
Sbjct: 383 NALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARE 442

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             + L V  Y  ++     +G   EA   FE+M+ S    P+  T+++++   S  G   
Sbjct: 443 NNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMR-SRGISPNKLTYTTLMYAYSKSGNSE 501

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLI-QCYGKAQRT 313
           EA  +F+EM+ +G  P+     +LI +C  K  +T
Sbjct: 502 EASKLFDEMVGSGVIPDNITYGTLIARCSEKGGKT 536



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 110/219 (50%), Gaps = 10/219 (4%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           ++  +++ +IK    AG  D    +  E+   G++P ++TYN L+D + ++ R  +   +
Sbjct: 9   LNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRL 68

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRA-RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
              M   G++P+  T+  L+    R  R+GE  + V +EM++ G+  +  +YN L+    
Sbjct: 69  KGRMEQGGMTPSVVTFGILINGLARGERFGEVGI-VLQEMEQLGVSPNEVIYNELIGWHC 127

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN- 296
             G+  +A  +F++M   +  +P + T++ +       G++  AE +  +ML  G   + 
Sbjct: 128 RKGHCSQALRLFDEM-VLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHC 186

Query: 297 -LF--VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            LF  V+  L+Q   + +R + VV   N +   G+ P+D
Sbjct: 187 GLFNTVVAWLLQ---RTRRLESVVSITNEMVTRGMRPND 222



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           T+ + K   +   + + M + G+  +  TY  ++R   +    E+ + ++ +M  +G + 
Sbjct: 248 TLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKP 307

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEA 283
            +  +NTLL    ++G  +E F + + MK +E  QPD  ++ ++I    C+ K + +A+ 
Sbjct: 308 DLFTFNTLLHAYCNLGKMEETFHLLDQMK-TEGLQPDIVSYGTIID-GHCKAKDIRKAKE 365

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
              E+++ G +PN+F+  +LI  YG+       + A+  +   GI P +   G L+  M 
Sbjct: 366 YLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMC 425

Query: 344 QTP-KEELGKLVECVEKSNSKLGYV 367
                EE   +     ++N  LG +
Sbjct: 426 HAGLVEEAKTIFSQARENNVDLGVI 450



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 98/253 (38%), Gaps = 21/253 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           ++G VE AF L  + R E+  + P+   F  LI        F     V +EM+ +GV PN
Sbjct: 58  KSGRVEEAFRL--KGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPN 115

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            + YN L+    R     Q   ++ EM    + P   TY  + +A  +    E    +  
Sbjct: 116 EVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILE 175

Query: 216 EMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           +M   GM +   L+NT++A +       +    I  +M +      D    + M  +C  
Sbjct: 176 DMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKG 235

Query: 275 ---------------RGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
                          +GK + EA  +   ML  G E +      +I+   K  + ++ ++
Sbjct: 236 GKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIK 295

Query: 319 ALNRLPELGITPD 331
               +   G  PD
Sbjct: 296 LHGDMTRRGFKPD 308



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 51/101 (50%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            AG VE A  ++ +AR     +    ++ +I+ Y   G     +  +EEM++ G+ PN +
Sbjct: 426 HAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKL 485

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           TY  L+    ++    +   ++ EM  +G+ P+  TY +L+
Sbjct: 486 TYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI 526



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M+ S N   + +++++MI      GKV     M  E+  AG +P +     L+    K+ 
Sbjct: 1   MRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSG 60

Query: 312 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
           R ++  R   R+ + G+TP     G L+N + +  +  E+G +++ +E+
Sbjct: 61  RVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQ 109


>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
 gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 119/230 (51%), Gaps = 7/230 (3%)

Query: 113 RNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           R  K  I+PN  +++T++++YG A  F   ++++  M+   +K N++TYN ++   G+  
Sbjct: 359 RMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTL 418

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
              +   + ++M   G+ PN  TY++++  +G+A   + +  ++++++  G ++   LY 
Sbjct: 419 EHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQ 478

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           T++      G    A  +  ++K     QPD+   ++ ITI +  G++ EA  +F +  +
Sbjct: 479 TMIVAYEKAGLVGHAKRLLHELK-----QPDNIPRTTAITILAKAGRIEEATWVFRQAFD 533

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           AG   ++ V   +I  + + ++  +V+    ++  +G  P+      +LN
Sbjct: 534 AGELKDISVFECMIDLFSRNKKHKNVLEVFEKMRNVGHFPNSDVIALVLN 583



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 1/214 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA   E+A GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++
Sbjct: 171 RAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKEGMFDAALSWLQKMEQDRVSGDLV 230

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+NL++   +     +  +I+  +  +G++P+   Y +++  +G+A+   +   + +EM
Sbjct: 231 LYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVFGKAKLFREARFLLKEM 290

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +   +      Y+TLL M  +     EA  +  +MK   NC  D  T + MI +      
Sbjct: 291 RAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEV-NCPLDLTTCNIMIDVYGQLDM 349

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           V EA+ +F  M + G EPN+    ++++ YG+A+
Sbjct: 350 VKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAE 383



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 89/191 (46%), Gaps = 1/191 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++  YN +L  + RAK+      ++ EM    L+ +  TY++L+  +G+    +  LS 
Sbjct: 157 PSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKEGMFDAALSW 216

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            ++M++  +   + LY+ L+ +   +    +A  IF  +K S    PD   +++MI +  
Sbjct: 217 LQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRS-GITPDIVAYNTMINVFG 275

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
                 EA  +  EM      P+    ++L+  + + ++  + +  ++ + E+    D  
Sbjct: 276 KAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLT 335

Query: 334 FCGCLLNVMTQ 344
            C  +++V  Q
Sbjct: 336 TCNIMIDVYGQ 346



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 1/160 (0%)

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           +P+   Y  +LR   RA+  E    ++ EM+++ +      Y+TL+      G  D A  
Sbjct: 156 TPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKEGMFDAALS 215

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
             + M+  +    D   +S++I +       S+A ++F+ +  +G  P++    ++I  +
Sbjct: 216 WLQKMEQ-DRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVF 274

Query: 308 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           GKA+   +    L  +  + + PD      LLN+  +  K
Sbjct: 275 GKAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEK 314



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 111/270 (41%), Gaps = 50/270 (18%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMA--FGLYDRARNEKWRIDPNAFS 125
           GK G   +S +         +++ +  Y T     E A   G   R  +E  + D    +
Sbjct: 450 GKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQPDNIPRT 509

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
           T I +   AG  +    V+ +    G   ++  +  ++D   R K+   V  ++++M + 
Sbjct: 510 TAITILAKAGRIEEATWVFRQAFDAGELKDISVFECMIDLFSRNKKHKNVLEVFEKMRNV 569

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G  PN +  A +L AYG+ R  +   ++Y EM+E+G              C    +TDE 
Sbjct: 570 GHFPNSDVIALVLNAYGKLRDFDTADALYMEMQEEG--------------CV---FTDEV 612

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL------FV 299
              F+                 M+++   R      E++F E L++  +PN+       V
Sbjct: 613 H--FQ-----------------MLSLYGARNDYKRLESLF-ERLDS--DPNINKKELHLV 650

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           + S+   Y +  R+ D  R +NR+ ++ I+
Sbjct: 651 VASI---YERGNRSKDASRIINRMNKIAIS 677


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 123/244 (50%), Gaps = 4/244 (1%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           ++E AF L ++ +     + P+   ++ LI       + +  + V++EM+   +KP+ +T
Sbjct: 679 DLEKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVT 738

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+   G A +      ++K+M DN L PN  TY  L+ A  +    E  + V+  MK
Sbjct: 739 YGILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMK 798

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G+QL+  ++ TL+   A     D+A E+++ MK  +  +P++ TF+S+I  C     +
Sbjct: 799 RDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSI 858

Query: 279 SEAEAMFNEMLE--AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +A  +F EM +  +  +P+L   +++I+ + + +     +  LN + +  I  D+    
Sbjct: 859 KKAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYN 918

Query: 337 CLLN 340
            LL+
Sbjct: 919 SLLD 922



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 122/250 (48%), Gaps = 9/250 (3%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPN 155
             +   +E A  +++  + +  +++   F+TLIK +  +   D  L VY+ MK    +KPN
Sbjct: 782  VKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPN 841

Query: 156  MITYNNLLDTMGRAKRPWQVKTIYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSV 213
             +T+N+L+D   R     +   I++EM    +   P+  TY+++++ + R +  +  L +
Sbjct: 842  NVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIM 901

Query: 214  YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
              +M++  +     LYN+LL  C      + A +++++M+  +  +P + T+S +I I  
Sbjct: 902  LNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILK-IKPSNVTYSILIKIYG 960

Query: 274  CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD- 332
             +  + +A  +  EM + G  P L V T L+Q   K+++     +  + +   GI  D  
Sbjct: 961  KQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQL 1020

Query: 333  ----RFCGCL 338
                   GCL
Sbjct: 1021 TYQTMINGCL 1030



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 141/302 (46%), Gaps = 9/302 (2%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             R  +V  A  ++   +    +     +  LIK YG+A   D    V+++MK   + PN 
Sbjct: 712  VRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNS 771

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +TY  L+D   +  +  +   +++ M  +G+  N   + +L++ + ++   +  L VY+ 
Sbjct: 772  VTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQI 831

Query: 217  MK-EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSWTFSSMITICSC 274
            MK +  ++ +   +N+L+  C       +A EIFE+MK    + +PD  T+S+MI    C
Sbjct: 832  MKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMIK-GFC 890

Query: 275  RGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            R K + +A  M N+M +     +  +  SL+    KA   +  ++    +  L I P + 
Sbjct: 891  REKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILKIKPSNV 950

Query: 334  FCGCLLNVMTQT---PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390
                L+ +  +    PK  LG L E ++K   + G +V   L +  I+    K A +LF+
Sbjct: 951  TYSILIKIYGKQRNLPK-ALGVLEE-MKKDGIRPGLIVYTCLLQTCIKSRQLKTAEQLFH 1008

Query: 391  SI 392
             +
Sbjct: 1009 DM 1010



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 153/365 (41%), Gaps = 52/365 (14%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR---PW 173
            R D  +F+T+IK             ++  MK   +KPN +TYN+L+D   R  R    W
Sbjct: 580 MRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAW 639

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           Q   +  EM  N + P+  TY++L++        ++ +S         M L         
Sbjct: 640 Q---LLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGIS-------NPMDL--------- 680

Query: 234 AMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
                    ++AF + E MK S    +PD   ++ +I  C     V+ A A+F EM  + 
Sbjct: 681 ---------EKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSN 731

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELG 351
            +P+      LI+ YG A + D+      ++ +  + P+    GCL++   +  + E   
Sbjct: 732 IKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAM 791

Query: 352 KLVECVEKSNSKLGYVVKLLLEEQDIEG---DFK-KEATELFNSISKDVK----KAYCNC 403
           ++ E +++   +L  ++   L    I+G    FK  +A E++  +  D K        N 
Sbjct: 792 EVFETMKRDGVQLNTIIFTTL----IKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNS 847

Query: 404 LIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSP--TQWSLHLKSLSLGAALTALHIWI 461
           LID C+  N ++ A ++ E     E+   I    P    +S  +K       +    I +
Sbjct: 848 LIDCCIRCNSIKKAMEIFE-----EMKQPISHTKPDLITYSTMIKGFCREKNIQQALIML 902

Query: 462 NDLSK 466
           ND+ K
Sbjct: 903 NDMEK 907



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 110/291 (37%), Gaps = 77/291 (26%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +D   FS +IK Y  A      LNV   MK  G+KP+ + YN+++D   +  +  +   +
Sbjct: 364 MDMMTFSCMIKGYCRAQRLPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLL 423

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM---------------- 222
           Y EM   G++P   T+ SL+    R+   +    V  +MKEK +                
Sbjct: 424 YDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKS 483

Query: 223 ---------------QLSVT--------LYNTLLAMCADVGYTDEAFEIFEDMK------ 253
                          QL  +        L+N LL  C +    D A E+F+ +K      
Sbjct: 484 ENQRQDLEKAFVLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQLKPQSQPQ 543

Query: 254 --------------------SSENC------------QPDSWTFSSMITICSCRGKVSEA 281
                               S++N             +PD  +F+++I  C+   K+  A
Sbjct: 544 IQVSNTDDADNSLSLEDSPDSAKNAPAVVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLA 603

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             MFN M     +PN     SLI    +  R +   + L+ + +  I PD+
Sbjct: 604 FEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQQNNIVPDN 654



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 4/139 (2%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
            +A  +EMA  +Y     E  +I P+   +S LIK+YG   N    L V EEMK  G++P 
Sbjct: 926  KANEIEMALKVYKNM--EILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRPG 983

Query: 156  MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +I Y  LL T  ++++    + ++ +M   G+  +  TY +++     ++  +  L + +
Sbjct: 984  LIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTMINGCLYSQKFDSILILLK 1043

Query: 216  EMKEKGMQLSVTLYNTLLA 234
            +  +  +QL   L   +L 
Sbjct: 1044 DASDSKVQLPHELSQNILT 1062



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 126/328 (38%), Gaps = 76/328 (23%)

Query: 107 GLYDRARNEKWRIDPNAFSTL---IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY---- 159
            L   A +   R D  A STL   +K Y         L  + +++      N  TY    
Sbjct: 271 NLVQEAVHNAKRTDFLASSTLKIFVKYYSRLNQTQTALQYFHQLQQTSQAQNDPTYYQTV 330

Query: 160 NNLLDTMGRAKRPWQVKTIY-KEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYR 215
           N +LD++ +A+   + + IY K  T +   PN     T++ +++ Y RA+     L+V  
Sbjct: 331 NQMLDSLLKAELFEEAEQIYNKVFTLSKDQPNCMDMMTFSCMIKGYCRAQRLPQALNVLS 390

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            MKE+G++                                    PD   ++S+I  CS  
Sbjct: 391 IMKERGIK------------------------------------PDEVLYNSIIDGCSKN 414

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            ++++A  +++EML  G  P      SLI C  ++   D   R L ++ E  + PD+   
Sbjct: 415 NQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTY 474

Query: 336 GCLLN-VMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
             L   + ++  +++L K                 +L  +     DF  +   LF     
Sbjct: 475 STLFKGIKSENQRQDLEKAF---------------VLYNQLQNSNDFTPDEI-LF----- 513

Query: 395 DVKKAYCNCLIDLCVNLNLLENACKLLE 422
                  N L+D C+N   L+ A +L +
Sbjct: 514 -------NVLLDACINCKQLDRAVELFK 534


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 143/311 (45%), Gaps = 12/311 (3%)

Query: 93  KSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 146
           K+Y+T      R G ++    +    R+    I+   +  LI  Y  AG  D    +Y+E
Sbjct: 318 KAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQE 377

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKT-IYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           M+   ++PN   Y  ++ T+ R    WQ    + +EM   G++P+ + Y  ++  +GR R
Sbjct: 378 MRDCDIRPNTYMYARMI-TIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTR 436

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             E     + +M++ G++  V  +N+L+  C   G   EA +++  M  ++ C P + TF
Sbjct: 437 QLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKM-VNDGCAPTAQTF 495

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           + +I       + ++   M  EM   G  PN+   T+L+  Y +A+   D V  L  + E
Sbjct: 496 NIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKE 555

Query: 326 LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY-VVKLLLEEQDIEGDFKK 383
            G+ P       L N   Q    E+   +++ +EK N ++   ++ LL+    + G   +
Sbjct: 556 DGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGR-SQ 614

Query: 384 EATELFNSISK 394
           EA  +F  I +
Sbjct: 615 EAFAVFEYIKE 625



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 118/236 (50%), Gaps = 15/236 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  LY +  N+        F+ +I   G    ++    + EEM++ G+ PN++
Sbjct: 469 KAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVV 528

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D   +A+         + M ++G+ P+   Y++L  AY +    E TL V + M
Sbjct: 529 TYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTM 588

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +++ +++++ + N L+   +  G + EAF +FE +K +     D  T+++++       K
Sbjct: 589 EKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKEA-GLTADKITYTTLMKALIRAEK 647

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           + E   +F+EM++AG  P+           GKA+   D++R+  R  E  ++P D+
Sbjct: 648 LDEVSGVFDEMIKAGCRPD-----------GKAK---DMLRSAFRFKERELSPKDK 689



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 117/236 (49%), Gaps = 3/236 (1%)

Query: 98  RAGNVEM--AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R G V++   F L+   + E  ++D   ++ LI   G A   +  +   E+++A G+  +
Sbjct: 222 RHGVVDIYTGFRLFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVAD 281

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             +Y +L+ ++G+  R  + + + +EM   GL PN   Y +LL  Y R    +   +V  
Sbjct: 282 RDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKT 341

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            +++ GM ++   Y  L+   A  G  D    ++++M+   + +P+++ ++ MITI    
Sbjct: 342 LLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDC-DIRPNTYMYARMITIYRDT 400

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G+  +   +  EM +AG  P+  V   +I  +G+ ++ +    A  ++ + GI PD
Sbjct: 401 GQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPD 456



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 115/249 (46%), Gaps = 36/249 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D + ++ +I  +G     +     + +M+  G++P+++++N+L+D   +A +P + + +Y
Sbjct: 421 DAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLY 480

Query: 180 KEMTDNGLSP----------------NWN-------------------TYASLLRAYGRA 204
            +M ++G +P                 WN                   TY +L+  Y +A
Sbjct: 481 YKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQA 540

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
           R  +D +   + MKE GM  S T Y+ L    A +G  ++   + + M+  EN + +   
Sbjct: 541 RLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTME-KENIEINLAM 599

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
            + +I   S  G+  EA A+F  + EAG   +    T+L++   +A++ D+V    + + 
Sbjct: 600 LNLLINAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMI 659

Query: 325 ELGITPDDR 333
           + G  PD +
Sbjct: 660 KAGCRPDGK 668



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 95/191 (49%), Gaps = 1/191 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D +++ +L+   G  G       + EEMK  G++PN+  YN LL    R  +  Q+ T+ 
Sbjct: 281 DRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVK 340

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             + D G+S N  TY  L+ AY RA   +   ++Y+EM++  ++ +  +Y  ++ +  D 
Sbjct: 341 TLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDT 400

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +  ++  +M+ +    PD+  ++ +I       ++ +A   F +M + G EP++  
Sbjct: 401 GQWQKGVKLLREMQQA-GVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVS 459

Query: 300 LTSLIQCYGKA 310
             SLI    KA
Sbjct: 460 WNSLIDACCKA 470



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/267 (18%), Positives = 109/267 (40%), Gaps = 37/267 (13%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT------------------------ 158
            ++ L+  Y    ++   L    +MK +G  P++++                        
Sbjct: 178 GYNALVGAYAQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQACRHGVVDIYTGFRLFQE 237

Query: 159 ------------YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
                       YN+L+   G+A +P +     +++  +GL  + ++Y SL+ + G+   
Sbjct: 238 MQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGR 297

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
             +  ++  EMK  G++ ++  YNTLL   +  G   +  +  + +        +  T+ 
Sbjct: 298 TAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQ-IDTVKTLLRDTGMSINKITYC 356

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            +I   +  G +   EA++ EM +    PN ++   +I  Y    +    V+ L  + + 
Sbjct: 357 LLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQA 416

Query: 327 GITPDDRFCGCLLNVMTQTPKEELGKL 353
           G+TPD      ++N   +T + E  ++
Sbjct: 417 GVTPDAHVYNVIINTFGRTRQLEQARI 443


>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
           succulentifolia]
          Length = 382

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 138 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 197

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 198 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 257

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 258 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGX 312

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 313 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 359



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK     +++ 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLI 63

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G++PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 64  SEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 182

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SM+ I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 325 ELGITPD 331
             G+  D
Sbjct: 243 SSGVDID 249



 Score = 38.9 bits (89), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 10/160 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +           + +  Y T      RAG V  A     R  +E  R D 
Sbjct: 226 GKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRPDN 281

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                 I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++ +
Sbjct: 282 IPRDIAIHILAGAGRIEEATWVFRQAIDAGXVKDITVFERMIHLFSKYKKYGNVVEVFDK 341

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 342 MRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 381


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 120/230 (52%), Gaps = 1/230 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++ST+I  +   G+ D   + Y EM    + PN++TYN+++  + +A+   +   + 
Sbjct: 11  DVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVL 70

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  +G+ P+  TY S++  +  +   ++ +   ++M+  G++  V  YN+L+      
Sbjct: 71  TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 130

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA +IF+ M +    +PD  T+ +++   + +G + E   + + M+  G  PN +V
Sbjct: 131 GRCTEARKIFDSM-TKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 189

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            + L+  Y K ++ ++ +   +++ + G+ P+    G +++V+ ++ + E
Sbjct: 190 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 239



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 112/236 (47%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G+++  +  Y+   ++  RI PN   ++++I     A   D  + V   M   GV P+
Sbjct: 24  KEGDLDKTYSTYNEMLDK--RISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPD 81

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TYN+++     + +P +     K+M  +G+ P+  TY SL+    +     +   ++ 
Sbjct: 82  CMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFD 141

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M ++G++  +T Y TLL   A  G   E   +  D+       P+ + FS ++   + +
Sbjct: 142 SMTKRGLKPDITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPNHYVFSILVCAYAKQ 200

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            KV EA  +F++M + G  PN     ++I    K+ R +D +    ++ + G+ PD
Sbjct: 201 EKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPD 256



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 1/206 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + D   + TL++ Y T G       + + M   G+ P
Sbjct: 126 YLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 185

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N   ++ L+    + ++  +   ++ +M   GL+PN  TY +++    ++   ED +  +
Sbjct: 186 NHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYF 245

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++G++    +YN+L+         ++A E+F +M     C    + F+S+I     
Sbjct: 246 EQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIF-FNSIIDSHCK 304

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVL 300
            G+V E+  +F+ M+  G +P++  L
Sbjct: 305 EGRVIESVKLFDLMVRIGVKPDIITL 330



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 3/161 (1%)

Query: 182 MTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           M D+G    P+  +Y++++  + +    + T S Y EM +K +  +V  YN+++A     
Sbjct: 1   MADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKA 60

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              D+A E+   M  S    PD  T++S++      G+  EA     +M   G EP++  
Sbjct: 61  QTVDKAMEVLTTMVKS-GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVT 119

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             SL+    K  R  +  +  + + + G+ PD    G LL 
Sbjct: 120 YNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 160


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 119/248 (47%), Gaps = 1/248 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  AF L+    ++    D   +S LI  +   G  +  ++++ +M    +KP++ T+N 
Sbjct: 241 VNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNI 300

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L++   +  +  + KT++  M   G+ PN+ TY SL+  Y   +      S++  M + G
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +   +  Y+ ++     +   DEA  +F++M   +N  PD  T+SS+I   S  G++S A
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDVVTYSSLIDGLSKSGRISYA 419

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             + ++M + G  P +    S++    K  + D  +  L +L + GI P+      L+  
Sbjct: 420 LQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKG 479

Query: 342 MTQTPKEE 349
           + Q+ K E
Sbjct: 480 LCQSGKLE 487



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 116/233 (49%), Gaps = 3/233 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ AF  +D+     +  D  ++ TLI      G     L++ + +    V+PN++ Y
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMY 228

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++D+M + K   +   ++ EM   G+SP+  TY++L+  +       D + ++ +M  
Sbjct: 229 NTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMIL 288

Query: 220 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + ++  V  +N L+ A C D G   E   +F DM   +  +P+  T++S++       +V
Sbjct: 289 ENIKPDVYTFNILVNAFCKD-GKMKEGKTVF-DMMMKQGIKPNFVTYNSLMDGYCLVKEV 346

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++A+++FN M + G  P++   + +I  + K ++ D+ +     +    I PD
Sbjct: 347 NKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPD 399



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 112/243 (46%), Gaps = 1/243 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  AF ++ +     +  D   F+TLIK     G        ++++ A+G   + I
Sbjct: 132 QLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQI 191

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L+  + +         + + +  N + PN   Y +++ +  + +   +   ++ EM
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG+   V  Y+ L++    +G  ++A ++F  M   EN +PD +TF+ ++      GK
Sbjct: 252 ISKGISPDVVTYSALISGFCILGKLNDAIDLFNKM-ILENIKPDVYTFNILVNAFCKDGK 310

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + E + +F+ M++ G +PN     SL+  Y   +  +      N + + G+ PD +    
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 338 LLN 340
           ++N
Sbjct: 371 MIN 373



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 110/224 (49%), Gaps = 1/224 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  A  L+++   E  + D   F+ L+  +   G       V++ M   G+KPN +TY
Sbjct: 274 GKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTY 333

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N+L+D     K   + K+I+  M   G++P+  +Y+ ++  + + +  ++ +++++EM  
Sbjct: 334 NSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR 393

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           K +   V  Y++L+   +  G    A ++ + M       P   T++S++       +V 
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM-HDRGVPPTIRTYNSILDALCKIHQVD 452

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           +A A+  ++ + G +PN++  + LI+   ++ + +D  +    L
Sbjct: 453 KAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGL 496



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 3/192 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+     +    D   +S+LI     +G     L + ++M   GV P + TYN++LD
Sbjct: 384 AMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILD 443

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +  +  +   +  ++ D G+ PN  TY+ L++   ++   ED   V+  +  KG  L
Sbjct: 444 ALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNL 503

Query: 225 SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           +V  Y  ++   C + G  +EA  +   M+ +  C PD+ T+  +I     + +   AE 
Sbjct: 504 NVDTYTIMIQGFCVE-GLFNEALALLSKMEDN-GCIPDAKTYEIIILSLFKKDENDMAEK 561

Query: 284 MFNEMLEAGFEP 295
           +  EM+  G  P
Sbjct: 562 LLREMIARGVRP 573



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/255 (19%), Positives = 115/255 (45%), Gaps = 3/255 (1%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           +V+ A  L++R            F+ ++     + ++   L + ++M+  G+KPN++  N
Sbjct: 65  DVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCN 124

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L++   +        +++ ++   G  P+  T+ +L++        +     + ++   
Sbjct: 125 ILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVAL 184

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVS 279
           G       Y TL+     VG T  A ++ + +  +   QP+   ++++I ++C  +  V+
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNL-VQPNVVMYNTIIDSMCKVK-LVN 242

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA  +F+EM+  G  P++   ++LI  +    + +D +   N++    I PD      L+
Sbjct: 243 EAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILV 302

Query: 340 NVMTQTPKEELGKLV 354
           N   +  K + GK V
Sbjct: 303 NAFCKDGKMKEGKTV 317


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 130/287 (45%), Gaps = 26/287 (9%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP---WQVKT 177
           P     L+  Y   G       V   MK +G+ P++   N LL  + RA      W+V+ 
Sbjct: 173 PVVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRG 232

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
               M   G+SP+  TY++L+ AY + R  E    V  EM+E G  L+V  YNTL+    
Sbjct: 233 F---MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLC 289

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  +EAF   ++M+      PD +T+ ++I     RG+  +A+ + +EM  AG  PN+
Sbjct: 290 RAGAIEEAFGYKKEMEDY-GLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNV 348

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-----DDRFCG-CLLNVMTQTPKEELG 351
            V ++LI  + +    D+  + +  +   G+ P     D+   G C L  M +  +    
Sbjct: 349 VVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASR---- 404

Query: 352 KLVECVEKSNSKLGYVVKLLLEEQDIEGDF----KKEATELFNSISK 394
                + K  +K+GY+   +     IEG      K+EA  L N + K
Sbjct: 405 -----ILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRK 446



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 105/200 (52%), Gaps = 1/200 (0%)

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           EM+  G+ PN+ TY+ +++ + +     +   + ++M  +GL PN   YA L+  Y R  
Sbjct: 443 EMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREG 502

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
                    ++M  + +   +  YN+L+   ++VG  DEA E +++M   +  QP+ +T+
Sbjct: 503 SFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLE-KGFQPNDFTY 561

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
             +I   S  G + +AE + ++ML +G  PN F+   +++ Y K+   + V   L  + E
Sbjct: 562 GGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLE 621

Query: 326 LGITPDDRFCGCLLNVMTQT 345
            G+ PD+R  G +++ ++ +
Sbjct: 622 KGLMPDNRLYGIVIHNLSSS 641



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 3/241 (1%)

Query: 111 RARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           R   E   I P+ +  STLI+ Y    + +    V EEM+  G   N++TYN L+  + R
Sbjct: 231 RGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCR 290

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
           A    +     KEM D GL P+  TY +++    +    +    +  EM   G+  +V +
Sbjct: 291 AGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVV 350

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y+TL+      G  DEAF+I ++M S+   QP+  T+ ++I      G++  A  +  +M
Sbjct: 351 YSTLIDGFMRQGNADEAFKIVKEM-SAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQM 409

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
            + G+  +      +I+ + +    ++    LN + + GI+P+      ++N + Q  + 
Sbjct: 410 TKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGES 469

Query: 349 E 349
           E
Sbjct: 470 E 470



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 46/297 (15%)

Query: 70  TGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 129
            G SP  Y +        S L E     R  ++E A  + +  R     ++   ++TLI 
Sbjct: 237 AGISPDVYTY--------STLIEAYCKVR--DLESAKKVVEEMRETGCSLNVVTYNTLIG 286

Query: 130 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 189
               AG  +      +EM+  G+ P+  TY  +++ + +  RP Q K +  EM+  GL P
Sbjct: 287 GLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMP 346

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMC------------ 236
           N   Y++L+  + R    ++   + +EM   G+Q +   Y+ L+  +C            
Sbjct: 347 NVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRIL 406

Query: 237 ---ADVGYT-------------------DEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
                +GY                    +EAF +  +M+      P+ +T+S +I     
Sbjct: 407 KQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKG-GISPNVYTYSIIINGLCQ 465

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+   A  +  +M+  G +PN FV   LI  Y +          L ++    +TPD
Sbjct: 466 IGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPD 522



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 4/224 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+  +A     +   E    D   +++LI      G  D  +  Y+EM   G +PN  
Sbjct: 500 REGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDF 559

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+     A    + + +  +M ++GL+PN   YA +L  Y ++   E   S  + M
Sbjct: 560 TYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSM 619

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+     LY  ++   +  G+   A  +   ++ +    PDS  + S+I+       
Sbjct: 620 LEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKN-GLVPDSLIYGSLISGFCKAAD 678

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
           + +A  + +EM + G EP +    +LI  + K   +DD+  A N
Sbjct: 679 MEKAVGLLDEMAKKGIEPGISCYNALIDGFCK---SDDISHARN 719



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 101/216 (46%), Gaps = 2/216 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           + +G+++ A  +           D   + +LI  +  A + +  + + +EM   G++P +
Sbjct: 639 SSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGI 698

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN L+D   ++      + I+  +   GL PN  TY +L+  Y +A    D + +Y E
Sbjct: 699 SCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNE 758

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G+     +Y+ L A C++ G   +A  I E+M +       S  F++++     RG
Sbjct: 759 MLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISS--FNTLVHGFCKRG 816

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           K+ E     + M++    P+L  + +++   G+A +
Sbjct: 817 KLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGK 852



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/211 (18%), Positives = 96/211 (45%), Gaps = 2/211 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +  +I    ++G+    ++V   ++  G+ P+ + Y +L+    +A    +   + 
Sbjct: 627 DNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLL 686

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM   G+ P  + Y +L+  + ++       +++  +  KG+  +   Y TL+      
Sbjct: 687 DEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKA 746

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A +++ +M  +E   PD++ +S +   CS  G + +A  +  EM+  G+   +  
Sbjct: 747 GDIRDAIDLYNEML-TEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAI-ISS 804

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             +L+  + K  +  + V+ L+ + +  I P
Sbjct: 805 FNTLVHGFCKRGKLQETVKFLHVMMDKDIVP 835



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 2/191 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A ++E A GL D    +      + ++ LI  +  + +     N++  +   G+ PN +
Sbjct: 675 KAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCV 734

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D   +A        +Y EM   G++P+   Y+ L      +   +  L +  EM
Sbjct: 735 TYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEM 794

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G  + ++ +NTL+      G   E  +    M   ++  P   T  +++      GK
Sbjct: 795 IARGYAI-ISSFNTLVHGFCKRGKLQETVKFLHVMM-DKDIVPSLLTVENIVIGLGEAGK 852

Query: 278 VSEAEAMFNEM 288
           +SEA  +F E+
Sbjct: 853 LSEAHTIFVEL 863


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 1/240 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV  A  L D  +      D   ++ L+  +   G  +     ++EM   G+ PN ++Y
Sbjct: 499 GNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSY 558

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+D   +  +     ++ + M + G +PN  +Y +++    +     +   +  +M E
Sbjct: 559 TTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAE 618

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+  +V  Y TL+      G T  AF+IF DM+  + C P+ +T+SS+I      GK  
Sbjct: 619 QGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRK-CLPNLYTYSSLIYGLCQEGKAD 677

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EAE +  EM   G  P+    TSLI  +    R D     L R+ ++G  P+ R    LL
Sbjct: 678 EAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLL 737



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 4/294 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L  R +    R +   ++ LI      G  +  + +Y +M   G+ PN +TYN L++ + 
Sbjct: 367 LVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC 426

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
              R      I+  M  +G   N  TY  +++        E  + ++ +M + G   +V 
Sbjct: 427 VGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 486

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YNTL+      G  + A  + + MK +  C+PD WT++ +++  S  GK+  A   F E
Sbjct: 487 TYNTLINGYLTKGNVNNAARLLDLMKEN-GCEPDEWTYNELVSGFSKWGKLESASFYFQE 545

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           M+E G  PN    T+LI  + K  + D  +  L R+ E+G  P+      ++N ++   K
Sbjct: 546 MVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLS---K 602

Query: 348 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 401
           E      E +    ++ G +  ++     I+G  +   T+    I  D++K  C
Sbjct: 603 ENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKC 656



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 5/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R  N+++AFG++DR   E    DPN+  +STLI      G  D  L++ EEM   G++P 
Sbjct: 287 RNRNLDLAFGVFDRMVKEGC--DPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPT 344

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY   +  +   +   +   +   M   G  PN  TY +L+    R    E  + +Y 
Sbjct: 345 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 404

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M ++G+  +   YN L+      G    A +IF  M+       ++ T++ +I      
Sbjct: 405 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME-GHGSLANTQTYNEIIKGLCLG 463

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           G + +A  +F +ML+ G  P +    +LI  Y      ++  R L+ + E G  PD+
Sbjct: 464 GDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 520



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 101/203 (49%), Gaps = 1/203 (0%)

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           +G  N+Y++M   G++P+++T+N L++ + +  +  + + I  ++    LSP+  TY SL
Sbjct: 222 EGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSL 281

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           +  + R R  +    V+  M ++G   +   Y+TL+    + G  DEA ++ E+M   + 
Sbjct: 282 ILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEM-IEKG 340

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            +P  +T++  IT         EA  +   M + G  PN+   T+LI    +  + +  +
Sbjct: 341 IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAI 400

Query: 318 RALNRLPELGITPDDRFCGCLLN 340
              +++ + G+ P+      L+N
Sbjct: 401 GLYHKMLKEGLVPNTVTYNALIN 423



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           NF+   N+   M  IG +P + TY+ L+  + R  R ++ + + K+M + G  P+   Y 
Sbjct: 769 NFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYY 828

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           SLL A+ +    +  L ++  ++ KG QL +++Y  L+      G  +EA  +F++M   
Sbjct: 829 SLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEK 888

Query: 256 E-NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           E N     WT   ++      G++     + + M    F PN+
Sbjct: 889 EWNADEIVWTV--LVDGLLKEGELDLCMKLLHIMESKNFTPNI 929



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 34/241 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPN 155
           R G  + AF ++     EK +  PN ++    +YG    G  D    + +EM+  G+ P+
Sbjct: 637 RNGRTQFAFKIFHDM--EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPD 694

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +T+ +L+D      R      + + M D G  PN+ TY+ LL                 
Sbjct: 695 EVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLL----------------- 737

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYT------DEAFEIFEDM---KSSENCQPDSWTFS 266
               KG+Q    L    +A+  +  Y+      D  FEI  ++    S   C+P   T+S
Sbjct: 738 ----KGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYS 793

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           ++++    +G+  EAE +  +M E GF P+  +  SL+  + K    D  ++  + +   
Sbjct: 794 TLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAK 853

Query: 327 G 327
           G
Sbjct: 854 G 854



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           VE A  LY +  N   +     F+TLI +    G       +  ++    + P++ TY +
Sbjct: 221 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTS 280

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+    R +       ++  M   G  PN  TY++L+         ++ L +  EM EKG
Sbjct: 281 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKG 340

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +V  Y   +     + + +EA E+   MK    C+P+  T++++I+  S  GK+  A
Sbjct: 341 IEPTVYTYTLPITALCAIEHEEEAIELVARMK-KRGCRPNVQTYTALISGLSRLGKLEVA 399

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQ--CYG 308
             ++++ML+ G  PN     +LI   C G
Sbjct: 400 IGLYHKMLKEGLVPNTVTYNALINELCVG 428



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 29/261 (11%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           ++ G V++A  L +R   E+   +PN  +++ +I        F     + ++M   G+ P
Sbjct: 566 SKDGKVDIALSLLERM--EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLP 623

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N+ITY  L+D + R  R      I+ +M      PN  TY+SL+    +    ++   + 
Sbjct: 624 NVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILL 683

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT---- 270
           +EM+ KG+      + +L+     +G  D AF +   M     C+P+  T+S ++     
Sbjct: 684 KEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDV-GCKPNYRTYSVLLKGLQK 742

Query: 271 -ICSCRGKVS-EAEAMFN------------------EMLEAGFEPNLFVLTSLIQCYGKA 310
                  KV+ + EA+++                   M E G EP L   ++L+    + 
Sbjct: 743 ECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRK 802

Query: 311 QRTDDVVRALNRLPELGITPD 331
            R  +  + +  + E G  PD
Sbjct: 803 GRFYEAEQLVKDMKERGFCPD 823



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +V     E++  G   +  +  +LL    +    E   ++Y++M   G+Q S+  +NTL+
Sbjct: 188 RVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI 247

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAG 292
            + +  G   EA E+        +  PD +T++S+I +  CR + +  A  +F+ M++ G
Sbjct: 248 NILSKKGKVREA-ELILSQIFQYDLSPDVFTYTSLI-LGHCRNRNLDLAFGVFDRMVKEG 305

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +PN    ++LI       R D+ +  L  + E GI P
Sbjct: 306 CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 343


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 8/223 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G +E A  ++D   +    I+PN   + TL+  Y   G  D  L+++ EM   G+KP+ 
Sbjct: 547 VGKMEKALRVFDAMVSAG--IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 604

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I YN ++D +  A R    K  + EMT++G++ N  TY+ +LR   + R  ++ + +++E
Sbjct: 605 ILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKE 664

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++   +++ +   NT++A        +EA ++F  + S     P   T+S MIT     G
Sbjct: 665 LRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI-SRSGLVPCVVTYSIMITNLIKEG 723

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            V EAE MF+ M  AG EP+  +L  +++   +  + +++VRA
Sbjct: 724 LVEEAEDMFSSMQNAGCEPDSRLLNHVVR---ELLKKNEIVRA 763



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 145/312 (46%), Gaps = 28/312 (8%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A++T+I  +   G+ +   ++++EM   G+ P+ +TY++++  + +A+   + +   
Sbjct: 218 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M + G+ PN  TY +L+  Y      ++ + V++EM+ + +   V  +N L+      
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKY 337

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++F+ M + +   PD ++++ M+   + +G + +   +F+ ML  G  P +  
Sbjct: 338 GKIKEARDVFDTM-AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICT 396

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE----ELGKLVE 355
              LI+ Y      D  +   N + + G+ P         NV+T T        +GK+ +
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKP---------NVLTYTTVIAALCRIGKMDD 447

Query: 356 CVEKSNSKLG-------YVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLC 408
            +EK N  +        Y    L++     G   K A EL + I  +         +D+ 
Sbjct: 448 AMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLK-AKELISEIMNNGMH------LDIV 500

Query: 409 VNLNLLENACKL 420
           +  +++ N CKL
Sbjct: 501 LFSSIINNLCKL 512



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 7/225 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +P+ FS  I L G A    GCL    ++++ M   G+ P + T+N L+          + 
Sbjct: 356 NPDVFSYNIMLNGYATK--GCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKA 413

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             I+ EM D+G+ PN  TY +++ A  R    +D +  + +M ++G+      Y+ L+  
Sbjct: 414 MIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQG 473

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G   +A E+  ++ ++     D   FSS+I      G+V +A+ +F+  +  G  P
Sbjct: 474 FCTHGSLLKAKELISEIMNN-GMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              V + L+  Y    + +  +R  + +   GI P+D   G L+N
Sbjct: 533 TAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVN 577



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/333 (19%), Positives = 140/333 (42%), Gaps = 8/333 (2%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +   G   K+ I  N       K    +Y T      R G ++ A   +++  ++    D
Sbjct: 404 YANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 463

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
             A+  LI+ + T G+      +  E+   G+  +++ ++++++ + +  R    + I+ 
Sbjct: 464 KYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFD 523

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
              + GL P    Y+ L+  Y      E  L V+  M   G++ +  +Y TL+     +G
Sbjct: 524 LTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIG 583

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             DE   +F +M   +  +P +  ++ +I      G+   A+  F+EM E+G   N    
Sbjct: 584 RIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 642

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
           + +++   K +  D+ +     L  + +  D      ++  M QT + EE   L   + +
Sbjct: 643 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISR 702

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           S      V   ++    I+    +EA ++F+S+
Sbjct: 703 SGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSM 735



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 122/299 (40%), Gaps = 45/299 (15%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N    +D   FS++I      G      N+++    +G+ P  + Y+ L+D      +  
Sbjct: 492 NNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKME 551

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++  M   G+ PN   Y +L+  Y +    ++ LS++REM +KG++ S  LYN ++
Sbjct: 552 KALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 611

Query: 234 AMCADVGYT-----------------------------------DEAFEIFEDMKSSENC 258
               + G T                                   DEA  +F+++++  N 
Sbjct: 612 DGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAM-NV 670

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           + D  T ++MI       +V EA+ +F  +  +G  P +   + +I    K    ++   
Sbjct: 671 KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAED 730

Query: 319 ALNRLPELGITPDDRFCGCLLN--VMTQTPKEEL---GKLVECVEKSNSKLGYVVKLLL 372
             + +   G  PD R    LLN  V     K E+   G  +  +++ N  L ++  +LL
Sbjct: 731 MFSSMQNAGCEPDSR----LLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLL 785



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 2/183 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P   TY  L+D   RA RP      + ++   GL  +      LL+ +  A+  ++ L
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 212 SVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMI 269
            +      E G    V  Y+ LL    D G + +A ++   M +    C PD   ++++I
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVI 226

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G V++A  +F EM++ G  P+    +S++    KA+  D     L ++   G+ 
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 286

Query: 330 PDD 332
           P++
Sbjct: 287 PNN 289


>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           macrophylla]
          Length = 381

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 137 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 196

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 197 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 256

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 257 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 311

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   N++  LG  PD      +LN
Sbjct: 312 VKDITVFERMIHLLSKXKKYSNVVEVFNKMRGLGYFPDSDVIAXVLN 358



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 23  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 82

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 83  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 142

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 143 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 202

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 203 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 261

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 262 AGLVAHAKRLLHELKRPDNIPRD 284



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 63  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 181

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SMI I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 325 ELGITPD 331
             G+  D
Sbjct: 242 SSGVEID 248



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 261 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 317 VFERMIHLLSKXKKYSNVVEVFNKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVYMEM 376

Query: 218 KEKG 221
           +E G
Sbjct: 377 QEVG 380


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 109/217 (50%), Gaps = 3/217 (1%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +++   F++LI+ Y  AG F   + +++ MK+I V P+++T+N+L+  + +  R    K 
Sbjct: 145 KLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKE 204

Query: 178 IYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           +Y EM    G+SP+  TY  L+R + +    ++    +REM+       V  YNTL+   
Sbjct: 205 VYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGL 264

Query: 237 ADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              G    A  +   M K  E   P+  T++++I     + +V EA  +  EM   G +P
Sbjct: 265 CRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKP 324

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLP-ELGITPD 331
           N+    +L++   +A + D +   L R+  + G +PD
Sbjct: 325 NMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPD 361



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 5/195 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   MA  +YD      + + P+   ++ LI+ +      D     + EM++     +
Sbjct: 195 KRGRTNMAKEVYDEMLG-TYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDAD 253

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDN--GLSPNWNTYASLLRAYGRARYGEDTLSV 213
           ++TYN L+D + RA +    + +   M     GL+PN  TY +L+R Y   +  E+ L V
Sbjct: 254 VVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVV 313

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             EM  +G++ ++  YNTL+    +    D+  ++ E MKS     PD++TF+++I +  
Sbjct: 314 LEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHC 373

Query: 274 CRGKVSEAEAMFNEM 288
           C G + EA  +F  M
Sbjct: 374 CAGNLDEALKVFESM 388



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 103/204 (50%), Gaps = 9/204 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG V +A  L +    +   ++PN   ++TLI+ Y      +  L V EEM + G+KPN
Sbjct: 266 RAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPN 325

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           MITYN L+  +  A +  ++K + + M +D G SP+  T+ +++  +  A   ++ L V+
Sbjct: 326 MITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVF 385

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------NCQPDSWTFSSM 268
             MK+  +      Y+TL+      G  D A ++F+++   E        +P + +++ +
Sbjct: 386 ESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPI 445

Query: 269 ITICSCRGKVSEAEAMFNEMLEAG 292
                  GK  +AE +  ++++ G
Sbjct: 446 FESLCEHGKTKKAERVIRQLMKRG 469



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 92/210 (43%), Gaps = 39/210 (18%)

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           + SL+R+Y  A   ++++ +++ MK   +  SV  +N+L+++    G T+ A E++++M 
Sbjct: 151 FNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEML 210

Query: 254 SSENCQPDSWTFSSMIT-ICS---------------------------------CR-GKV 278
            +    PD+ T++ +I   C                                  CR GKV
Sbjct: 211 GTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKV 270

Query: 279 SEAEAMFNEMLEA--GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
             A  + N M +   G  PN+   T+LI+ Y   Q  ++ +  L  +   G+ P+     
Sbjct: 271 RIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYN 330

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGY 366
            L+  + +  K  L K+ + +E+  S  G+
Sbjct: 331 TLVKGLCEAHK--LDKMKDVLERMKSDGGF 358



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 13/183 (7%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR- 215
           I+   +L T+   K P +    +K     G S    +Y  +L   GR R     L+V R 
Sbjct: 76  ISKTTVLRTLRLIKDPSKALRFFKWTQQKGFSHTPESYFIMLEILGRER----NLNVARN 131

Query: 216 -----EMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
                E   KG ++L    +N+L+   A+ G   E+ ++F+ MKS     P   TF+S++
Sbjct: 132 FLFSIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIA-VSPSVVTFNSLM 190

Query: 270 TICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +I   RG+ + A+ +++EML   G  P+      LI+ + K    D+  R    +     
Sbjct: 191 SILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNC 250

Query: 329 TPD 331
             D
Sbjct: 251 DAD 253



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 82/186 (44%), Gaps = 15/186 (8%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+T+I L+  AGN D  L V+E MK   +  +  +Y+ L+ ++ +       + ++
Sbjct: 361 DTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLF 420

Query: 180 KEMTDNG----------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
            E+ +            L+ ++N     L  +G+ +  E    V R++ ++G Q   +  
Sbjct: 421 DELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAE---RVIRQLMKRGTQDPQSYT 477

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
             ++  C +  Y +  +E+   M    +  PD   +  +I     + K   A+    +ML
Sbjct: 478 TVIMGHCKEGAY-ESGYELLMWM-LRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKML 535

Query: 290 EAGFEP 295
           ++ ++P
Sbjct: 536 KSSYQP 541



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 97/221 (43%), Gaps = 10/221 (4%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-------KAIG 151
           AGN++ A  +++  +  +   D  ++STLI+     G++D    +++E+          G
Sbjct: 375 AGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFG 434

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
            KP   +YN + +++    +  + + + +++   G + +  +Y +++  + +    E   
Sbjct: 435 SKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRG-TQDPQSYTTVIMGHCKEGAYESGY 493

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            +   M  +     + +Y+ L+           A E  E M  S + QP + T+ S++  
Sbjct: 494 ELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKMLKS-SYQPKTSTWHSVLAK 552

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ-CYGKAQ 311
              +G   E+  +   MLE     N+ + T  +Q  +G+ Q
Sbjct: 553 LLEKGCAHESSCVIVMMLEKNVRQNINLSTESLQLLFGREQ 593


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 110/236 (46%), Gaps = 2/236 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR    +    L  +  +   + D    + +I  +  +G  D  + ++++MK  G KP  
Sbjct: 106 TRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTT 165

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            TYN L+   G   RP++   + + M  D  + PN  TY  L++A+   +  E+  +V  
Sbjct: 166 STYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLH 225

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+Q  V  YNT+    A  G T++A  +   M+ ++  +P+  T   +I+     
Sbjct: 226 KMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNK-VKPNERTCGIIISGYCKE 284

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G ++EA      M E G  PN  V  SLI+ Y  A  T+ V  AL  + E GI PD
Sbjct: 285 GNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPD 340



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 106/198 (53%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           V+  +   G KP +ITY  L+  + R KR   +  +  ++ DNG+ P+     +++ A+ 
Sbjct: 82  VFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFS 141

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            +   ++ + ++++MKE G + + + YNTL+     VG   E+ ++ E M   EN +P+ 
Sbjct: 142 DSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPND 201

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++ +I     + K+ EA  + ++M+ +G +P++    ++ + Y +   T+   R + +
Sbjct: 202 RTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILK 261

Query: 323 LPELGITPDDRFCGCLLN 340
           +    + P++R CG +++
Sbjct: 262 MQYNKVKPNERTCGIIIS 279



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 101/215 (46%), Gaps = 9/215 (4%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ LI+ + T    +   NV  +M A G++P+++TYN +     +     + +
Sbjct: 197 VKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAE 256

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM- 235
            +  +M  N + PN  T   ++  Y +     + L     MKE G+  +  ++N+L+   
Sbjct: 257 RLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGY 316

Query: 236 --CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
               D    DEA  + E+       +PD  TFS+++   S  G +   E +FN+M++AG 
Sbjct: 317 LDATDTNGVDEALTLMEEF----GIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGI 372

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           EP++   + L + Y +A +       L  + + G+
Sbjct: 373 EPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGV 407



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 5/226 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+  A     R +      +P  F++LIK Y  A + +G       M+  G+KP+++
Sbjct: 283 KEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVV 342

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T++ +++    A      + I+ +M   G+ P+ + Y+ L + Y RA       S+   M
Sbjct: 343 TFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSM 402

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+Q +V ++ T+++     G  D AF + E M       P+  T+ ++I       +
Sbjct: 403 SKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEM-GTSPNLKTYETLIWGYGEAKQ 461

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
             +AE + + M E G  P +    S +Q    A R   + +  NR+
Sbjct: 462 PWKAEEILSTMEERGVVPEM----STMQLVADAWRAIGLFKEANRI 503



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 7/244 (2%)

Query: 94  SYDTRA------GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 147
           +Y+T A      G  E A  L  + +  K + +      +I  Y   GN    L     M
Sbjct: 238 TYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRM 297

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
           K +GV PN + +N+L+     A     V      M + G+ P+  T+++++ A+  A   
Sbjct: 298 KELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLM 357

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           ++   ++ +M + G++  +  Y+ L       G   +A  +   M S    Q +   F++
Sbjct: 358 DNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSM-SKYGVQTNVVIFTT 416

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I+     GK+  A ++  +M E G  PNL    +LI  YG+A++       L+ + E G
Sbjct: 417 IISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERG 476

Query: 328 ITPD 331
           + P+
Sbjct: 477 VVPE 480



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 39/73 (53%)

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           +GK  EA+A+F+ + E G +P L   T+L+    + +R   +   L+++ + G+ PD   
Sbjct: 73  KGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSIL 132

Query: 335 CGCLLNVMTQTPK 347
              ++N  + + K
Sbjct: 133 LNAMINAFSDSGK 145


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 110/229 (48%), Gaps = 2/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           EM   + +  RN    + P   S ++++ G A      + ++ ++K    +P    YN++
Sbjct: 141 EMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSM 200

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +  +    +  +V  +Y EM+  G   P+  TY++L+ A+ +    +    +  EMKE G
Sbjct: 201 IIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENG 260

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           MQ +  +Y  L+ +   +     A  +FE+M+  + C+PD +T++ +I      G++ EA
Sbjct: 261 MQPTTKIYTMLITLFFKLDDVHGALSLFEEMR-HQYCRPDVFTYTELIRGLGKAGRIDEA 319

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              F EM   G  P+  V+ ++I   GKA R DD ++    +  L   P
Sbjct: 320 YHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIP 368



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 6/255 (2%)

Query: 100 GNVEM---AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPN 155
           GN +M   A  ++ + +  K +    A++++I +    G +     +Y EM   G   P+
Sbjct: 170 GNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPD 229

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TY+ L+    +  R      +  EM +NG+ P    Y  L+  + +       LS++ 
Sbjct: 230 TMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFE 289

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM+ +  +  V  Y  L+      G  DEA+  F +M+  E C+PD+   ++MI      
Sbjct: 290 EMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQ-REGCRPDTVVMNNMINFLGKA 348

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC-YGKAQRTDDVVRALNRLPELGITPDDRF 334
           G++ +A  +F EM      P++    ++I+  +    R  +V     R+ E GI+P    
Sbjct: 349 GRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFT 408

Query: 335 CGCLLNVMTQTPKEE 349
              L++   +T + E
Sbjct: 409 YSILIDGFCKTNRME 423



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 2/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI  +   G  D    +  EMK  G++P    Y  L+    +        +++
Sbjct: 229 DTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLF 288

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM      P+  TY  L+R  G+A   ++    + EM+ +G +    + N ++      
Sbjct: 289 EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKA 348

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G  D+A ++F++M  +  C P   T++++I  +   + + SE  + F  M E+G  P+ F
Sbjct: 349 GRLDDAMKLFQEM-GTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSF 407

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             + LI  + K  R +  +  L  + E G  P
Sbjct: 408 TYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 439



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 2/203 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ LI L+    +  G L+++EEM+    +P++ TY  L+  +G+A R  +    + EM 
Sbjct: 268 YTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQ 327

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
             G  P+     +++   G+A   +D + +++EM       SV  YNT++ A+       
Sbjct: 328 REGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRA 387

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            E    FE MK S    P S+T+S +I       ++ +A  +  EM E GF P      S
Sbjct: 388 SEVPSWFERMKES-GISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCS 446

Query: 303 LIQCYGKAQRTDDVVRALNRLPE 325
           LI   GKA+R D        L E
Sbjct: 447 LIDALGKAKRYDLACELFQELKE 469



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 121/295 (41%), Gaps = 38/295 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM---------- 147
           +AG ++ A+  +   + E  R D    + +I   G AG  D  + +++EM          
Sbjct: 312 KAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVV 371

Query: 148 --------------------------KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                                     K  G+ P+  TY+ L+D   +  R  +   + +E
Sbjct: 372 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 431

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M + G  P    Y SL+ A G+A+  +    +++E+KE     S  +Y  ++      G 
Sbjct: 432 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 491

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D+A  +F++M +   C PD + ++++++  +  G + EA +    M E G  P++    
Sbjct: 492 LDDAINMFDEM-NKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYN 550

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
            ++    K       +  L+ + +  + PD      +L  ++     EE  KL+E
Sbjct: 551 IILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLME 605



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 106/236 (44%), Gaps = 3/236 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P++F  S LI  +      +  + + EEM   G  P    Y +L+D +G+AKR     
Sbjct: 402 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +++E+ +N  S +   YA +++  G+A   +D ++++ EM + G    V  YN L++  
Sbjct: 462 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 521

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           A  G  DEA      M+    C PD  +++ ++   +  G    A  M + M ++   P+
Sbjct: 522 ARTGMLDEALSTMRRMQ-EHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 580

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
           +    +++     A   ++  + +  +  LG   D      +L  + +   E  G+
Sbjct: 581 VVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGKVDHEYTGQ 636



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 83/172 (48%), Gaps = 1/172 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   ++A  L+   +          ++ +IK  G AG  D  +N+++EM  +G  P++ 
Sbjct: 453 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 512

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+  + R     +  +  + M ++G  P+ N+Y  +L    +       + +   M
Sbjct: 513 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 572

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           K+  ++  V  YNT+L   +  G  +EA ++ E+M ++   + D  T+SS++
Sbjct: 573 KQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEM-NTLGFEYDLITYSSIL 623



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 4/170 (2%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-LLRAYGRARYGEDTLSVYRE 216
           TY  L+  +   ++  ++  + +EM  N +     T  S ++R  G A+     ++++ +
Sbjct: 125 TYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQ 184

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K +  Q +   YN+++ M    G   +  E++ +M +  +C PD+ T+S++I+     G
Sbjct: 185 IKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLG 244

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           +   A  + NEM E G +P   + T LI  + K    DDV  AL+   E+
Sbjct: 245 RRDSATQLLNEMKENGMQPTTKIYTMLITLFFK---LDDVHGALSLFEEM 291



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 63/144 (43%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A  ++D         D  A++ L+      G  D  L+    M+  G  P++ 
Sbjct: 488 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 547

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN +L+ + +   P +   +   M  + + P+  +Y ++L A   A   E+   +  EM
Sbjct: 548 SYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEM 607

Query: 218 KEKGMQLSVTLYNTLLAMCADVGY 241
              G +  +  Y+++L     V +
Sbjct: 608 NTLGFEYDLITYSSILEAIGKVDH 631


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 3/213 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +++T+I  Y + GN +G   + + M+  G++P+  TY +L+  M +  R  +   +
Sbjct: 282 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 341

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M + GL PN  TY +L+  Y      E   S   EM +KG+  SV+ YN L+     
Sbjct: 342 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 401

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA ++ ++M+  +   PD+ T++ +I   S  G   +A  + NEML  G EP   
Sbjct: 402 EGRMGEADDMIKEMR-KKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHV 460

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             TSLI    +  R  +      ++ + G++PD
Sbjct: 461 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 493



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I P+A  ++ LI  Y   GN     +++ EM + G++P  +TY +L+  + R  R  
Sbjct: 417 KKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMK 476

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   +++++ D G+SP+   + +++  +      E    + +EM  K +      +NTL+
Sbjct: 477 EADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM 536

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G  +EA  + ++MK     +PD  +++++I+    RG + +A  + +EML  GF
Sbjct: 537 QGRCREGKVEEARMLLDEMK-RRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGF 595

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            P L    +LI+C  K Q  D     L  +   GI+PDD
Sbjct: 596 NPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDD 634



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y +R GN+E A  + D  R +    D   + +LI      G  +    ++++M  IG+ P
Sbjct: 294 YSSR-GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVP 352

Query: 155 NMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDT 210
           N +TYN L+D     G  +R +  +    EM   G+ P+ +TY  L+ A +   R GE  
Sbjct: 353 NAVTYNTLIDGYCNKGDLERAFSYR---DEMVKKGIMPSVSTYNLLVHALFMEGRMGEAD 409

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             + +EM++KG+      YN L+   +  G   +AF++  +M  S+  +P   T++S+I 
Sbjct: 410 -DMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML-SKGIEPTHVTYTSLIY 467

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + S R ++ EA+ +F ++L+ G  P++ +  +++  +      +     L  +    + P
Sbjct: 468 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPP 527

Query: 331 DD 332
           D+
Sbjct: 528 DE 529



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 5/233 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G++E AF   D    +      + ++ L+      G      ++ +EM+  G+ P+ ITY
Sbjct: 368 GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITY 427

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++   R     +   ++ EM   G+ P   TY SL+    R    ++   ++ ++ +
Sbjct: 428 NILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD 487

Query: 220 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
           +G+   V ++N ++   CA+ G  + AF + ++M   ++  PD  TF++++    CR GK
Sbjct: 488 QGVSPDVIMFNAMVDGHCAN-GNVERAFMLLKEM-DRKSVPPDEVTFNTLMQ-GRCREGK 544

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           V EA  + +EM   G +P+     +LI  YG+     D  R  + +  +G  P
Sbjct: 545 VEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNP 597



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 13/218 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R GN + AF L++   ++        +++LI +           +++E++   GV P++
Sbjct: 435 SRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDV 494

Query: 157 ITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTL 211
           I +N ++D     G  +R +    + KEM    + P+  T+ +L++  GR R G  E+  
Sbjct: 495 IMFNAMVDGHCANGNVERAFM---LLKEMDRKSVPPDEVTFNTLMQ--GRCREGKVEEAR 549

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            +  EMK +G++     YNTL++     G   +AF + ++M S     P   T++++I  
Sbjct: 550 MLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSI-GFNPTLLTYNALIK- 607

Query: 272 CSCRGKVSE-AEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           C C+ +  + AE +  EM+  G  P+     SLI+  G
Sbjct: 608 CLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMG 645



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           H   G+  ++++ +     ++    E +++T      R G VE A  L D  +    + D
Sbjct: 504 HCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPD 563

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
             +++TLI  YG  G+      V +EM +IG  P ++TYN L+  + + +     + + K
Sbjct: 564 HISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLK 623

Query: 181 EMTDNGLSPNWNTYASLLRAYG 202
           EM + G+SP+ +TY SL+   G
Sbjct: 624 EMVNKGISPDDSTYLSLIEGMG 645



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 35/299 (11%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           +Y EM  + +   + T+N +++ + +  +  + +     M   G  PN  +Y +++  Y 
Sbjct: 236 LYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYS 295

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPD 261
                E    +   M+ KG++     Y +L++ MC + G  +EA  +F+ M       P+
Sbjct: 296 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKE-GRLEEASGLFDKMVEI-GLVPN 353

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVR 318
           + T++++I     +G +  A +  +EM++ G  P++     L+      G+    DD+++
Sbjct: 354 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 413

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQT---------PKEELGKLVECVEKSNSKLGYVVK 369
            + +    GI PD      L+N  ++            E L K +E    + + L YV+ 
Sbjct: 414 EMRK---KGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLS 470

Query: 370 LLLEEQDIEGDFKKEATELFNSI-----SKDVKKAYCNCLID-LCVNLNLLENACKLLE 422
                     +  KEA +LF  I     S DV     N ++D  C N N +E A  LL+
Sbjct: 471 --------RRNRMKEADDLFEKILDQGVSPDV--IMFNAMVDGHCANGN-VERAFMLLK 518



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 1/153 (0%)

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L+R     R  ++    +  MKEKG+   +   N +L++   +   + A+ ++ +M    
Sbjct: 185 LVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLR 244

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
                 +TF+ M+ +    GK+ +A      M   GF+PN+    ++I  Y      +  
Sbjct: 245 -ISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGA 303

Query: 317 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            R L+ +   GI PD    G L++ M +  + E
Sbjct: 304 RRILDAMRVKGIEPDSYTYGSLISGMCKEGRLE 336


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 4/227 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AFG   + R   + ++  +++ LI L   +G     L +Y  M   G+KP++ T++ L+ 
Sbjct: 181 AFG---KMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMV 237

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G+ +    VK++ +EM   GL PN  TY   +R  GRA   ++   + + M++ G   
Sbjct: 238 ATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGP 297

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            V  Y  L+      G  D+A E+F  MK+S + +PD  T+ +M+   S  G +   +  
Sbjct: 298 DVVTYTVLIDALCTAGKLDDAMELFVKMKASSH-KPDRVTYITMLDKFSDCGDLGRVKEF 356

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++EM   G+ P++   T L+    KA   D+    L+ + + G+ P+
Sbjct: 357 WSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPN 403



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 11/239 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R   ++ A  L++    E   + P A++ +  I  YG +G  D  L  +E+MK  G+ PN
Sbjct: 416 RVNRLDDALDLFNNM--ETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPN 473

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++  N  L ++    R  + K I+  +  NGL+P+  TY  +++ Y +A   ++ + +  
Sbjct: 474 IVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLS 533

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF---EDMKSSENCQPDSWTFSSMITIC 272
           +M E   +  + + N+L+      G  DEA+++F   +DMK +    P   T++++I   
Sbjct: 534 DMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLA----PTVVTYNTLIAGL 589

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              G+V  A  +F  M   G  PN     +++ C  K    D  ++ L ++  +   PD
Sbjct: 590 GKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPD 648



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G    A  +Y R   E  +     FS L+   G   + +   ++ EEM+++G+KPN+ 
Sbjct: 206 QSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIY 265

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY   +  +GRA R  +   I K M D+G  P+  TY  L+ A   A   +D + ++ +M
Sbjct: 266 TYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKM 325

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K    +     Y T+L   +D G      E + +M+ ++   PD  TF+ ++      G 
Sbjct: 326 KASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEME-ADGYAPDVITFTILVNALCKAGN 384

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + EA  + + M + G  PNL    +LI    +  R DD +   N +  LG+ P
Sbjct: 385 IDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVP 437



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 126/285 (44%), Gaps = 36/285 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG ++ A  +  R  ++    D   ++ LI    TAG  D  + ++ +MKA   KP+ +
Sbjct: 276 RAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRV 335

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  +LD         +VK  + EM  +G +P+  T+  L+ A  +A   ++   +   M
Sbjct: 336 TYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVM 395

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-------- 269
           +++G+  ++  YNTL++    V   D+A ++F +M++     P ++T+   I        
Sbjct: 396 RKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETL-GVVPTAYTYILFIDFYGKSGR 454

Query: 270 ------------------TICSCR---------GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                              I +C          G++ EA+ +FN +   G  P+      
Sbjct: 455 SDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNM 514

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           +++CY KA + D+ +  L+ + E    PD      L+N + +  +
Sbjct: 515 MMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGR 559



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 92/171 (53%), Gaps = 1/171 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G+V  A  L+ R   E  R D  ++++L+     AG  D  L+ +E++K  G+  + I
Sbjct: 942  KTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSI 1001

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             YN ++D +GR+ R  +  T+Y EM   G++P+  TY SL+   G A   E    +Y E+
Sbjct: 1002 AYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEEL 1061

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            +  G++ +V  YN L+   +  G +D A+ +++ M     C P++ TF+ +
Sbjct: 1062 QFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVG-GCSPNTGTFAQL 1111



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 1/211 (0%)

Query: 121  PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
            P  +  L+     +G  +    ++EEM   G +PN   YN L++  G+         ++K
Sbjct: 895  PCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFK 954

Query: 181  EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
             M   G+ P+  +Y SL+     A   +D L  + ++K+ G+ L    YN ++       
Sbjct: 955  RMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSH 1014

Query: 241  YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +EA  ++++M+ S    PD +T++S+I      G V +A  ++ E+   G EPN+F  
Sbjct: 1015 RIEEALTLYDEMQ-SRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTY 1073

Query: 301  TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +LI+ Y  +  +D       R+   G +P+
Sbjct: 1074 NALIRGYSMSGNSDSAYAVYKRMMVGGCSPN 1104



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 111/266 (41%), Gaps = 36/266 (13%)

Query: 101  NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
            N EMA+ L+   +N     D   ++ L+  +G +G  +    +YE+M     KPN IT+N
Sbjct: 805  NDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHN 864

Query: 161  -----------------------------------NLLDTMGRAKRPWQVKTIYKEMTDN 185
                                                LLD + ++ R  + K +++EM D 
Sbjct: 865  IIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDY 924

Query: 186  GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
            G  PN   Y  L+  +G+         +++ M  +G++  +  Y +L+    + G  D+A
Sbjct: 925  GCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDA 984

Query: 246  FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
               FE +K +     DS  ++ MI       ++ EA  +++EM   G  P+LF   SLI 
Sbjct: 985  LHYFEKLKQT-GLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLIL 1043

Query: 306  CYGKAQRTDDVVRALNRLPELGITPD 331
              G A   +   +    L  +G+ P+
Sbjct: 1044 NLGVAGMVEQAGKLYEELQFIGLEPN 1069



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ LI+ +    N +   N++ EMK  G  P++ TYN LLD  G++ +  ++  +Y++M
Sbjct: 792 SYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQM 851

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             +   PN  T+  ++    ++   +  L ++ ++       +   Y  LL      G  
Sbjct: 852 ICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRL 911

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           +EA E+FE+M     C+P++  ++ +I      G V+ A  +F  M+  G  P+L   TS
Sbjct: 912 EEAKELFEEM-VDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTS 970

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           L+ C  +A R DD +    +L + G+  D
Sbjct: 971 LVGCLCEAGRVDDALHYFEKLKQTGLYLD 999



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 147/322 (45%), Gaps = 15/322 (4%)

Query: 67  HGKTGSSPKSY-----IWVNPKSPRASKLKEKSYD-TRAGNVEMAFGLYDRARNEKWRID 120
           +GK+G S K+      + +   +P         Y     G +  A  +++R ++     D
Sbjct: 449 YGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPD 508

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              ++ ++K Y  AG  D  + +  +M     +P++I  N+L++T+ +A R  +   ++ 
Sbjct: 509 SVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFC 568

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
            + D  L+P   TY +L+   G+    +  + ++  M   G   +   +NT+L       
Sbjct: 569 RLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKND 628

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             D A ++   M ++ NC PD  TF+++I       +VS+A  +F++M +    P+   L
Sbjct: 629 EVDLALKMLYKM-TTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQM-KKMLTPDCVTL 686

Query: 301 TSLIQCYGKAQRTDDVVR-ALNRLPELGITPDDRFCGCLL-NVMTQTPKEE---LGKLVE 355
            +L+    K    +D  + A + +  LG+  D RF   L+  ++TQ   E+    G  + 
Sbjct: 687 CTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLV 746

Query: 356 C--VEKSNSKLGYVVKLLLEEQ 375
           C  V K  S L  ++K+L + +
Sbjct: 747 CGRVCKDGSVLMPIIKVLCKHK 768



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 102/199 (51%), Gaps = 1/199 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            ++G +E A  L++   +   R +   ++ LI  +G  G+ +    +++ M   G++P++ 
Sbjct: 907  KSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLK 966

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +Y +L+  +  A R       ++++   GL  +   Y  ++   GR+   E+ L++Y EM
Sbjct: 967  SYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEM 1026

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + +G+   +  YN+L+      G  ++A +++E+++     +P+ +T++++I   S  G 
Sbjct: 1027 QSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFI-GLEPNVFTYNALIRGYSMSGN 1085

Query: 278  VSEAEAMFNEMLEAGFEPN 296
               A A++  M+  G  PN
Sbjct: 1086 SDSAYAVYKRMMVGGCSPN 1104



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 5/195 (2%)

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
           K +GVKP + +YN L++             ++ EM + G +P+  TY  LL A+G++   
Sbjct: 782 KELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKI 841

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
            +   +Y +M     + +   +N ++A        D+A ++F D+ S +   P   T+  
Sbjct: 842 NELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGD-FSPTPCTYGP 900

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           ++      G++ EA+ +F EM++ G  PN  +   LI  +GK    +       R+   G
Sbjct: 901 LLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREG 960

Query: 328 ITPDDR----FCGCL 338
           I PD +      GCL
Sbjct: 961 IRPDLKSYTSLVGCL 975



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           R  KE G++ ++  YN L+     V   + A+ +F +MK++  C PD +T++ ++     
Sbjct: 779 RFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNA-GCAPDVFTYNLLLDAHGK 837

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            GK++E   ++ +M+ +  +PN      +I    K+   D  +     L     +P    
Sbjct: 838 SGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCT 897

Query: 335 CGCLLNVMTQTPKEELGK 352
            G LL+ + ++ + E  K
Sbjct: 898 YGPLLDGLLKSGRLEEAK 915


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 1/250 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A  L +   +E    D  +++TLI  +              +M   GV+PN  
Sbjct: 263 RKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEF 322

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN +++   +A        I ++    G  P+  TY+SL+            ++V+ E 
Sbjct: 323 TYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEA 382

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG + S+ LYNTL+   +  G   +A ++ +DM     C PD WT++ ++      G 
Sbjct: 383 MEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDM-MEHGCSPDIWTYNLVVNGLCKMGC 441

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +S+A  + N+ +  G  P++F   +LI  Y K +  D  +  L+ +   GITPD      
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNT 501

Query: 338 LLNVMTQTPK 347
           LLN + +  K
Sbjct: 502 LLNGLCKARK 511



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 135/299 (45%), Gaps = 17/299 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A G+ + A  +    D   F+TLI  Y    N D  + + + M + G+ P++I
Sbjct: 438 KMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVI 497

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL+ + +A++   V   +K M + G +PN  TY  L+ ++ + R   + + +++EM
Sbjct: 498 TYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEM 557

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K +G+   +    TL+      G  D+A+E+F  ++        +  F+ MI     +  
Sbjct: 558 KTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLN 617

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VS AE +F++M  +   P+ +    +I  Y K    D     L      G+ P    CG 
Sbjct: 618 VSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGK 677

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           +LN +             CV    S+   ++ L+++     G   +E   +F +  K+V
Sbjct: 678 VLNCL-------------CVTHRLSEAVVIINLMVQ----NGIVPEEVNSIFEADKKEV 719



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L +  +N   ++    +  +++ YG  G     +NV+E M     +P++ +YN +++ + 
Sbjct: 63  LAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILV 122

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
                 Q   +Y  M D G+ P+  T+   ++++         L +   M  +G + +  
Sbjct: 123 EYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAV 182

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  +++         EA+ +F++M     C PD  TF+ +I +   +G V E+E +F++
Sbjct: 183 SYCAVISGFYKENCQIEAYHLFDEMLKQGIC-PDILTFNKLIHVLCKKGNVQESEKLFSK 241

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +++ G  PNLF     IQ   +    D+  R L  +   G+TPD
Sbjct: 242 VMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPD 285



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L+D    +    D   F+ LI +    GN      ++ ++   GV PN+ T+N  + 
Sbjct: 200 AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQ 259

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + R     +   + + +   GL+P+  +Y +L+  + +     +      +M   G++ 
Sbjct: 260 GLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEP 319

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   YNT++      G    A +I  D    +   PD +T+SS+I      G ++ A A+
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRD-AMFKGFIPDEFTYSSLINGLCNDGDMNRAMAV 378

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           F E +E GF+ ++ +  +L++   K       ++ +  + E G +PD
Sbjct: 379 FYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 2/182 (1%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-NTYASLLRAYGRARYGED 209
           G K  + TY  +++ +G   +   ++ +  EM  N  S      Y  ++R YGR    ++
Sbjct: 35  GFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQE 94

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            ++V+  M     + SV  YN ++ +  + GY  +A +++  MK      PD +T +  +
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDI-GIYPDVYTHTIRM 153

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G+ + A  + N M   G E N     ++I  + K     +     + + + GI 
Sbjct: 154 KSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGIC 213

Query: 330 PD 331
           PD
Sbjct: 214 PD 215


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 131/278 (47%), Gaps = 8/278 (2%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN F   TLIK Y     ++  + + + M A GV P++  YN L+  + RAK+  + K
Sbjct: 482 VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAK 541

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  +M + G+ PN +TY + +  Y ++   +     +++M   G+  +  +Y  L+   
Sbjct: 542 MLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGH 601

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            DVG T EA   F+ M   +   PD   +S++I   S  GK  EA  +F + L+ G  P+
Sbjct: 602 CDVGNTVEALSTFKCM-LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPD 660

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN----VMTQTPKEELGK 352
           +F+  SLI  + K    +   +  + +   GI P+      L+N      +    E    
Sbjct: 661 VFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKL 720

Query: 353 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390
             E + K  S  GY+  +L++    EG+ +K A  LF+
Sbjct: 721 FDEMISKGISPDGYIYCILIDGCGKEGNLEK-ALSLFH 757



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 121/272 (44%), Gaps = 40/272 (14%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+    I      G  D  L V + M   G+ P+  TY  L+D   + KR  + K I
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++ M  +GL+PN  TY +L+  + +    E+ L +  EM  +G++L+V  YN ++   A 
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSW----------------------------------- 263
            G   +A  +F +M  +   +PD+W                                   
Sbjct: 394 AGEMAKAMSLFNEMLMA-GIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPF 452

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+S +I+       + +A  + ++M+  G +PN+F+  +LI+ Y +  R +  +  L  +
Sbjct: 453 TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512

Query: 324 PELGITPDDRFC-GCLLNVMTQTPKEELGKLV 354
              G+ P D FC  CL+  + +  K E  K++
Sbjct: 513 IANGVLP-DLFCYNCLIIGLCRAKKVEEAKML 543



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 4/214 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A+S +I      G     + V+ +    GV P++  YN+L+    +     +   +Y
Sbjct: 625 DIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLY 684

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
            EM  NG++PN   Y +L+  YG  + G   +   ++ EM  KG+     +Y  L+  C 
Sbjct: 685 DEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCG 744

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  ++A  +F +  + +        F+S+I      GKV EA  +F++M++    PN+
Sbjct: 745 KEGNLEKALSLFHE--AQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNI 802

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              T LI  YGKA+  ++  +    +    I P+
Sbjct: 803 VTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 836



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 145/337 (43%), Gaps = 49/337 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+E A  + D       +++   ++ +I     AG     ++++ EM   G++P+  
Sbjct: 358 KEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTW 417

Query: 158 TYNNLLD------TMGRA-------------KRPW----------------QVKTIYKEM 182
           TYN L+D       M +A               P+                +   +  +M
Sbjct: 418 TYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM 477

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             NG+ PN   Y +L++AY +    E  + + + M   G+   +  YN L+         
Sbjct: 478 IRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKV 537

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           +EA  +  DM   +  +P++ T+ + I + S  G++  AE  F +ML +G  PN  + T 
Sbjct: 538 EEAKMLLVDM-GEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTI 596

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEELGKLVECVEKS 360
           LI+ +     T + +     + E G+ PD R    +++ +++    KE +G  ++ +   
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL--- 653

Query: 361 NSKLGYVVKLLLEEQDI-----EGDFKKEATELFNSI 392
             K G V  + L    I     EGD +K A++L++ +
Sbjct: 654 --KTGVVPDVFLYNSLISGFCKEGDIEK-ASQLYDEM 687



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 9/276 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G  + A G++ +        D   +++LI  +   G+ +    +Y+EM   G+ PN+
Sbjct: 637 SKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNI 696

Query: 157 ITYNNLLDTMGRAKRP--WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + YN L++  G  K     +   ++ EM   G+SP+   Y  L+   G+    E  LS++
Sbjct: 697 VVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLF 756

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            E ++K +  S++ +N+L+      G   EA E+F+DM   +   P+  T++ +I     
Sbjct: 757 HEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDM-VDKKLTPNIVTYTILIDAYGK 814

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
              + EAE +F +M      PN    TSL+  Y +      ++     +   GI  D   
Sbjct: 815 AEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIA 874

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL 370
            G    VM     +E GK +E ++  N  L   +KL
Sbjct: 875 YG----VMASAYCKE-GKSLEALKLLNKSLVEGIKL 905



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 108/233 (46%), Gaps = 2/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+E A  L+  A+ +K     +AF++LI  +   G       ++++M    + PN++
Sbjct: 745 KEGNLEKALSLFHEAQ-QKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIV 803

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  G+A+   + + ++ +M    + PN  TY SLL +Y +       +S++++M
Sbjct: 804 TYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDM 863

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+      Y  + +     G + EA ++  +    E  + +   F ++I       +
Sbjct: 864 EARGIACDAIAYGVMASAYCKEGKSLEALKLL-NKSLVEGIKLEDDVFDALIFHLCKEKQ 922

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +S    + +EM +     +     +L+  + K+   D+  + L  +  LG  P
Sbjct: 923 ISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 975



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 124/287 (43%), Gaps = 12/287 (4%)

Query: 45  SVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEM 104
           SV LQ     + +K S  PQY H  +  + +  +  +    +A  + EK   TR   +E+
Sbjct: 100 SVRLQNFFHWSSSKMS-TPQYLHSYSILAIR--LCNSGLIHQADNMLEKLLQTRKPPLEI 156

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
              L  R   E    +   F   I  +   G  +   +V+    + G  P +I  NNL+ 
Sbjct: 157 LDSLV-RCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMR 215

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKG 221
            + +A        +Y  M +  + P+  TY ++++A+   G    G+  LS   EM EK 
Sbjct: 216 DLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLS---EM-EKE 271

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            + ++  YN  +      G  DEA E+ + +   +   PD  T++ ++     + +  EA
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEV-KKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEA 330

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           + +F  M  +G  PN F  T+LI  + K    ++ +R  + +   G+
Sbjct: 331 KLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGL 377


>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 3/210 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PW-QVKT 177
           D  +++T I   G AG  +    +  EM  +G++P ++TYN+ +  + R     W Q   
Sbjct: 115 DAISYNTAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVA 174

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + K M+  G++P+  TY SL+ A G+    +  LSV + MK++G+   +  Y+  ++ C 
Sbjct: 175 LVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACG 234

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           + G  + +  +  + KS     PD   +++ +T C+   +  +A  +  EML AG  P+ 
Sbjct: 235 EAGQWEYSVGLLAEAKSL-GITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDA 293

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
              TSLI   G   +    V  L  +P++G
Sbjct: 294 AAFTSLIAALGHDGQWTQAVEILESMPKMG 323



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L +   +++ ++D  A+S  I      G +   + +  +M  +GV+PN+I+ N  +   G
Sbjct: 33  LREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDMPNVGVRPNVISCNAAIKAWG 92

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            A +     +I + M+  GLSP+  +Y + + A G A   E    +  EM   G++ +V 
Sbjct: 93  EAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQSEQAQELMSEMSRLGIEPTVV 152

Query: 228 LYNTLLAMCADVGYTD--EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
            YN+ +A  A  G     +A  + + M S     PDS T++S+I  C   G+  +A ++ 
Sbjct: 153 TYNSAIAAIARGGGGQWRQAVALVKHM-SLAGVTPDSITYNSLIVACGKGGQWKQALSVL 211

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             M + G   ++   ++ I   G+A + +  V  L     LGITPD
Sbjct: 212 KGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSLGITPD 257



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 5/217 (2%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN  S    IK +G AG +   L++   M   G+ P+ I+YN  +  +G A +  Q +
Sbjct: 77  VRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQSEQAQ 136

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLA 234
            +  EM+  G+ P   TY S + A  R   G+    +++ + M   G+      YN+L+ 
Sbjct: 137 ELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYNSLIV 196

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
            C   G   +A  + + MK  +    D   +S+ I+ C   G+   +  +  E    G  
Sbjct: 197 ACGKGGQWKQALSVLKGMKK-QGLSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSLGIT 255

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           P+L   T+ +     A + D     L  +   GI PD
Sbjct: 256 PDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPD 292



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 1/180 (0%)

Query: 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
           G  G +   + + + M   GV P+ ITYN+L+   G+  +  Q  ++ K M   GLS + 
Sbjct: 164 GGGGQWRQAVALVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDI 223

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
             Y++ + A G A   E ++ +  E K  G+   +  Y   +  CAD    D+A  + ++
Sbjct: 224 IGYSAAISACGEAGQWEYSVGLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKE 283

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M S+   +PD+  F+S+I      G+ ++A  +   M + G   N  V  +LI  +  A+
Sbjct: 284 MLSA-GIRPDAAAFTSLIAALGHDGQWTQAVEILESMPKMGAPRNAMVYNALITSWANAE 342



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 58/115 (50%)

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G++ SV  Y+  L  CA  G   EA  +  +M+  +  + D   +S+ IT C+  G
Sbjct: 1   MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGG 60

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  EA A+ ++M   G  PN+    + I+ +G+A +    +  L  + + G++PD
Sbjct: 61  RWQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPD 115



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRAR 205
           M  +G++P++ +Y+  L    +  R  +   + +EM  D+ +  +   Y++ + A     
Sbjct: 1   MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGG 60

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             ++ +++  +M   G++ +V   N  +    + G    A  I   M S     PD+ ++
Sbjct: 61  RWQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGM-SKAGLSPDAISY 119

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY--GKAQRTDDVVRALNRL 323
           ++ I+     G+  +A+ + +EM   G EP +    S I     G   +    V  +  +
Sbjct: 120 NTAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHM 179

Query: 324 PELGITPD 331
              G+TPD
Sbjct: 180 SLAGVTPD 187



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 58/136 (42%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  +    + +    D   +S  I   G AG ++  + +  E K++G+ P+++
Sbjct: 200 KGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSLGITPDLV 259

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y   +     A +  +   + KEM   G+ P+   + SL+ A G        + +   M
Sbjct: 260 AYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQAVEILESM 319

Query: 218 KEKGMQLSVTLYNTLL 233
            + G   +  +YN L+
Sbjct: 320 PKMGAPRNAMVYNALI 335


>gi|255661176|gb|ACU25757.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 426

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQHRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAVLFQKLRSSGVEID 288



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G  P+   Y +++  +G A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 10/160 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +          ++ +  Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                 I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++ +
Sbjct: 321 IPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDK 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 381 MRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|302797282|ref|XP_002980402.1| hypothetical protein SELMODRAFT_32257 [Selaginella moellendorffii]
 gi|300152018|gb|EFJ18662.1| hypothetical protein SELMODRAFT_32257 [Selaginella moellendorffii]
          Length = 457

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 116/258 (44%), Gaps = 4/258 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A G++D         D +++  L   Y  AG+ D  + +  ++ A     N+ TY  ++ 
Sbjct: 17  AHGIFDSQLKSLAPPDASSYGILANAYVQAGDLDAAVKLLRDLPA-STTANLATYLCVMM 75

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + R KR      + +EM    + P   TY  L+   GR    ++   +++E+  +G   
Sbjct: 76  GLCRGKRSIDAIGVLREMQKRNVVPELATYLMLIEGLGRDHRVKEAFDLFQEIHARGFTA 135

Query: 225 SVTLYNTLLAMCADVGYTDE-AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
             + Y+ ++   A  GY DE A ++F  M+    C P+++ ++ ++T    +  V E   
Sbjct: 136 KASSYSYIVCGLAKYGYFDEAAIQLFRKMEGEYGCPPNTYAYNVLLTGLKKKDGVEEMRE 195

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           MF EM E G EPNL    + I    KA R DD +     + +   +PD+     L+N   
Sbjct: 196 MFLEMKEKGCEPNLVTYCTYILGLCKAGRVDDAMVVKKEMIQKSCSPDNVVYSILINAFC 255

Query: 344 QTPKEELGK--LVECVEK 359
           +  K   G+  L E +EK
Sbjct: 256 KVGKIYEGEKLLAEMLEK 273



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 148/341 (43%), Gaps = 66/341 (19%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           + V  EM+   V P + TY  L++ +GR  R  +   +++E+   G +   ++Y+ ++  
Sbjct: 87  IGVLREMQKRNVVPELATYLMLIEGLGRDHRVKEAFDLFQEIHARGFTAKASSYSYIV-- 144

Query: 201 YGRARYG---------------------------------------EDTLSVYREMKEKG 221
            G A+YG                                       E+   ++ EMKEKG
Sbjct: 145 CGLAKYGYFDEAAIQLFRKMEGEYGCPPNTYAYNVLLTGLKKKDGVEEMREMFLEMKEKG 204

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            + ++  Y T +      G  D+A  + ++M   ++C PD+  +S +I      GK+ E 
Sbjct: 205 CEPNLVTYCTYILGLCKAGRVDDAMVVKKEM-IQKSCSPDNVVYSILINAFCKVGKIYEG 263

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           E +  EMLE   +P++   +SL+ C  KA R  D  R   R+ E G  PD      +L+ 
Sbjct: 264 EKLLAEMLEKKLQPDVVCFSSLVDCLDKAGRYGDAYRLFRRMMEQGCKPDAVIASVMLDS 323

Query: 342 MTQTPKEELGKLVECVEK---------SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
            T+  + E+ + +E V++         S   +  +VK +     + GD  ++   L  ++
Sbjct: 324 FTK--RGEVAQALELVDEFVDRDLPLPSAGSINQLVKRI-----VVGDKVEDGVRLLKTM 376

Query: 393 ----SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 429
               S+ ++ +Y   L +LC      +NA + LEL L  E+
Sbjct: 377 ASRGSRPLQCSYATLLRELCRR----KNAVEALELDLFQEM 413



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 4/185 (2%)

Query: 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           +K + D   FS+L+     AG +     ++  M   G KP+ +  + +LD+  +     Q
Sbjct: 273 KKLQPDVVCFSSLVDCLDKAGRYGDAYRLFRRMMEQGCKPDAVIASVMLDSFTKRGEVAQ 332

Query: 175 VKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
              +  E  D  L  P+  +   L++        ED + + + M  +G +     Y TLL
Sbjct: 333 ALELVDEFVDRDLPLPSAGSINQLVKRIVVGDKVEDGVRLLKTMASRGSRPLQCSYATLL 392

Query: 234 AMCADVGYTDEAFE--IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
                     EA E  +F++M  S    PD  ++  ++      GK+ +   +F +++  
Sbjct: 393 RELCRRKNAVEALELDLFQEMIESGRI-PDVNSYEILVEALCKAGKIFQGHELFKQLISL 451

Query: 292 GFEPN 296
           GF P+
Sbjct: 452 GFIPS 456



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 41/251 (16%)

Query: 120 DPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +PN  +    + G   AG  D  + V +EM      P+ + Y+ L++   +  + ++ + 
Sbjct: 206 EPNLVTYCTYILGLCKAGRVDDAMVVKKEMIQKSCSPDNVVYSILINAFCKVGKIYEGEK 265

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRA-RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           +  EM +  L P+   ++SL+    +A RYG D   ++R M E+G +    + + +L   
Sbjct: 266 LLAEMLEKKLQPDVVCFSSLVDCLDKAGRYG-DAYRLFRRMMEQGCKPDAVIASVMLDSF 324

Query: 237 ADVGYTDEAFEIFEDM-----------------------------------KSSENCQPD 261
              G   +A E+ ++                                     +S   +P 
Sbjct: 325 TKRGEVAQALELVDEFVDRDLPLPSAGSINQLVKRIVVGDKVEDGVRLLKTMASRGSRPL 384

Query: 262 SWTFSSMIT-ICSCRGKVSEAEA-MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
             ++++++  +C  +  V   E  +F EM+E+G  P++     L++   KA +       
Sbjct: 385 QCSYATLLRELCRRKNAVEALELDLFQEMIESGRIPDVNSYEILVEALCKAGKIFQGHEL 444

Query: 320 LNRLPELGITP 330
             +L  LG  P
Sbjct: 445 FKQLISLGFIP 455


>gi|303280720|ref|XP_003059652.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458307|gb|EEH55604.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 196

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 1/175 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG  E A  L+D  + +    +    S LI   G +  +   L V+EEM+A GV+ N+ 
Sbjct: 4   RAGAWEKAVELHDHMKAKGMGANTITCSALINACGKSRQWKKALEVFEEMRAEGVEANIY 63

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+    + K+  +   I++    NG+ P+  TY +++ A  + R  +  L ++ +M
Sbjct: 64  TYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMISACEKGRRVDKALEIFVQM 123

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           K+ GM+ +   YN LLA C   G  D+A E+F+DMK  +  +PD    +++I  C
Sbjct: 124 KKAGMEANAITYNALLAACERAGKADDAREVFDDMK-RDGIKPDRVAHAALIGAC 177



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 1/165 (0%)

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           GRA    +   ++  M   G+  N  T ++L+ A G++R  +  L V+ EM+ +G++ ++
Sbjct: 3   GRAGAWEKAVELHDHMKAKGMGANTITCSALINACGKSRQWKKALEVFEEMRAEGVEANI 62

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y+ L++ CA     D+A EIFE  K +   +PD  T+ +MI+ C    +V +A  +F 
Sbjct: 63  YTYSALISACAKGKQLDKALEIFELCKVN-GVEPDGITYGAMISACEKGRRVDKALEIFV 121

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +M +AG E N     +L+    +A + DD     + +   GI PD
Sbjct: 122 QMKKAGMEANAITYNALLAACERAGKADDAREVFDDMKRDGIKPD 166



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 95/179 (53%), Gaps = 2/179 (1%)

Query: 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
           G AG ++  + +++ MKA G+  N IT + L++  G++++  +   +++EM   G+  N 
Sbjct: 3   GRAGAWEKAVELHDHMKAKGMGANTITCSALINACGKSRQWKKALEVFEEMRAEGVEANI 62

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
            TY++L+ A  + +  +  L ++   K  G++     Y  +++ C      D+A EIF  
Sbjct: 63  YTYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMISACEKGRRVDKALEIFVQ 122

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI-QCYGK 309
           MK +   + ++ T+++++  C   GK  +A  +F++M   G +P+     +LI  C G+
Sbjct: 123 MKKA-GMEANAITYNALLAACERAGKADDAREVFDDMKRDGIKPDRVAHAALIGACVGE 180



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  +++  R E    +   +S LI         D  L ++E  K  GV+P+ ITY  ++ 
Sbjct: 46  ALEVFEEMRAEGVEANIYTYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMIS 105

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              + +R  +   I+ +M   G+  N  TY +LL A  RA   +D   V+ +MK  G++ 
Sbjct: 106 ACEKGRRVDKALEIFVQMKKAGMEANAITYNALLAACERAGKADDAREVFDDMKRDGIKP 165

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
               +  L+  C        A + ++ MK
Sbjct: 166 DRVAHAALIGACVGEERYQAAIDAYKAMK 194



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           C   G  ++A E+ + MK+ +    ++ T S++I  C    +  +A  +F EM   G E 
Sbjct: 2   CGRAGAWEKAVELHDHMKA-KGMGANTITCSALINACGKSRQWKKALEVFEEMRAEGVEA 60

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           N++  ++LI    K ++ D  +         G+ PD
Sbjct: 61  NIYTYSALISACAKGKQLDKALEIFELCKVNGVEPD 96


>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
 gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 426

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+      Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  IF +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++P+  +Y++LL  Y   +   + LS++ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVENKKFLEALSIFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  P+    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 426

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 3/213 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +++T+I  Y + GN +G   + + M+  G++P+  TY +L+  M +  R  +   +
Sbjct: 260 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 319

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M + GL PN  TY +L+  Y      E   S   EM +KG+  SV+ YN L+     
Sbjct: 320 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 379

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA ++ ++M+  +   PD+ T++ +I   S  G   +A  + NEML  G EP   
Sbjct: 380 EGRMGEADDMIKEMR-KKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHV 438

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             TSLI    +  R  +      ++ + G++PD
Sbjct: 439 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 471



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I P+A  ++ LI  Y   GN     +++ EM + G++P  +TY +L+  + R  R  
Sbjct: 395 KKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMK 454

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   +++++ D G+SP+   + +++  +      E    + +EM  K +      +NTL+
Sbjct: 455 EADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM 514

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G  +EA  + ++MK     +PD  +++++I+    RG + +A  + +EML  GF
Sbjct: 515 QGRCREGKVEEARMLLDEMK-RRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGF 573

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            P L    +LI+C  K Q  D     L  +   GI+PDD
Sbjct: 574 NPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDD 612



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y +R GN+E A  + D  R +    D   + +LI      G  +    ++++M  IG+ P
Sbjct: 272 YSSR-GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVP 330

Query: 155 NMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDT 210
           N +TYN L+D     G  +R +  +    EM   G+ P+ +TY  L+ A +   R GE  
Sbjct: 331 NAVTYNTLIDGYCNKGDLERAFSYR---DEMVKKGIMPSVSTYNLLVHALFMEGRMGEAD 387

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             + +EM++KG+      YN L+   +  G   +AF++  +M  S+  +P   T++S+I 
Sbjct: 388 -DMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEM-LSKGIEPTHVTYTSLIY 445

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + S R ++ EA+ +F ++L+ G  P++ +  +++  +      +     L  +    + P
Sbjct: 446 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPP 505

Query: 331 DD 332
           D+
Sbjct: 506 DE 507



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 5/233 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G++E AF   D    +      + ++ L+      G      ++ +EM+  G+ P+ ITY
Sbjct: 346 GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITY 405

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++   R     +   ++ EM   G+ P   TY SL+    R    ++   ++ ++ +
Sbjct: 406 NILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD 465

Query: 220 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
           +G+   V ++N ++   CA+ G  + AF + ++M   ++  PD  TF++++    CR GK
Sbjct: 466 QGVSPDVIMFNAMVDGHCAN-GNVERAFMLLKEM-DRKSVPPDEVTFNTLMQ-GRCREGK 522

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           V EA  + +EM   G +P+     +LI  YG+     D  R  + +  +G  P
Sbjct: 523 VEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNP 575



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 13/218 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R GN + AF L++   ++        +++LI +           +++E++   GV P++
Sbjct: 413 SRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDV 472

Query: 157 ITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTL 211
           I +N ++D     G  +R +    + KEM    + P+  T+ +L++  GR R G  E+  
Sbjct: 473 IMFNAMVDGHCANGNVERAFM---LLKEMDRKSVPPDEVTFNTLMQ--GRCREGKVEEAR 527

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            +  EMK +G++     YNTL++     G   +AF + ++M S     P   T++++I  
Sbjct: 528 MLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSI-GFNPTLLTYNALIK- 585

Query: 272 CSCRGKVSE-AEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           C C+ +  + AE +  EM+  G  P+     SLI+  G
Sbjct: 586 CLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMG 623



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           H   G+  ++++ +     ++    E +++T      R G VE A  L D  +    + D
Sbjct: 482 HCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPD 541

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
             +++TLI  YG  G+      V +EM +IG  P ++TYN L+  + + +     + + K
Sbjct: 542 HISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLK 601

Query: 181 EMTDNGLSPNWNTYASLLRAYG 202
           EM + G+SP+ +TY SL+   G
Sbjct: 602 EMVNKGISPDDSTYLSLIEGMG 623



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 35/299 (11%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           +Y EM  + +   + T+N +++ + +  +  + +     M   G  PN  +Y +++  Y 
Sbjct: 214 LYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYS 273

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPD 261
                E    +   M+ KG++     Y +L++ MC + G  +EA  +F+ M       P+
Sbjct: 274 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKE-GRLEEASGLFDKMVEI-GLVPN 331

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVR 318
           + T++++I     +G +  A +  +EM++ G  P++     L+      G+    DD+++
Sbjct: 332 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 391

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQ---------TPKEELGKLVECVEKSNSKLGYVVK 369
            + +    GI PD      L+N  ++            E L K +E    + + L YV+ 
Sbjct: 392 EMRK---KGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLS 448

Query: 370 LLLEEQDIEGDFKKEATELFNSI-----SKDVKKAYCNCLID-LCVNLNLLENACKLLE 422
                     +  KEA +LF  I     S DV     N ++D  C N N +E A  LL+
Sbjct: 449 --------RRNRMKEADDLFEKILDQGVSPDV--IMFNAMVDGHCANGN-VERAFMLLK 496



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 1/153 (0%)

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L+R     R  ++    +  MKEKG+   +   N +L++   +   + A+ ++ +M    
Sbjct: 163 LVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLR 222

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
                 +TF+ M+ +    GK+ +A      M   GF+PN+    ++I  Y      +  
Sbjct: 223 -ISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGA 281

Query: 317 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            R L+ +   GI PD    G L++ M +  + E
Sbjct: 282 RRILDAMRVKGIEPDSYTYGSLISGMCKEGRLE 314


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 5/229 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           V  AF LY     +  R+ PN   +++LI  +   G  D    +  EM    V PN+ T+
Sbjct: 205 VRDAFDLYCEMFEK--RVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTF 262

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D + +  +  + K++   M   G+ P+  TY +L+  Y   +      +V+  M +
Sbjct: 263 NTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQ 322

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G+   V  Y+ +++  + +   DEA ++FE M+ +EN  PD   +SS+I      G+++
Sbjct: 323 MGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMR-NENVIPDVVAYSSLIDGLCKSGRIN 381

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
            A    +EM + G  PN+   TSLI    K+ + D  +  L ++ + GI
Sbjct: 382 SALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGI 430



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 109/230 (47%), Gaps = 1/230 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +  AF ++ +     ++ D   ++TLI+     G     LN ++ + + G+K + ++Y  
Sbjct: 100 INSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGT 159

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L++ + +  +      + +++      P+   Y +++    + +   D   +Y EM EK 
Sbjct: 160 LINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKR 219

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +  +V  Y +L+     VG  D+AF +  +M   +N  P+  TF++++      GK+ EA
Sbjct: 220 VFPNVVTYTSLIYGFCIVGQLDKAFGLLNEM-VLKNVNPNVCTFNTLVDGLCKEGKMREA 278

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +++   M++ G  P++F   +L+  Y   +         N + ++G+T D
Sbjct: 279 KSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCD 328



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L++  RNE    D  A+S+LI     +G  +  L   +EM   G  PN+ITY +L+D
Sbjct: 348 AMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLID 407

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + ++ +  +   + K++ D G+  N  TY  L+    +     D   V++++  KG  +
Sbjct: 408 ALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNV 467

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            V  Y+ ++         DEA  +   M+  + C PD+  + ++I     +    +AE +
Sbjct: 468 DVVTYSIMINGLCKESLFDEALTLLSKME-DKGCVPDAIAYETIINAFFEKDMNDKAEKL 526

Query: 285 FNEMLEA 291
             EM++ 
Sbjct: 527 LREMIDC 533



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 102/207 (49%), Gaps = 3/207 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D +++S +I         D  ++++E M+   V P+++ Y++L+D + ++ R        
Sbjct: 328 DVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYV 387

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 238
            EM D G  PN  TY SL+ A  ++   +  +++ +++K++G+Q ++  YN L+  +C D
Sbjct: 388 DEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKD 447

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
              TD A ++F+D+    +   D  T+S MI          EA  + ++M + G  P+  
Sbjct: 448 GRLTD-AQKVFQDLLMKGH-NVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAI 505

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPE 325
              ++I  + +    D   + L  + +
Sbjct: 506 AYETIINAFFEKDMNDKAEKLLREMID 532



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 94/192 (48%), Gaps = 3/192 (1%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           +++++ M+  G++ N IT N L+++    ++     +++ ++   G  P+  TY +L+R 
Sbjct: 69  IHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRG 128

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
                  +++L+ +  +  +G++L    Y TL+     +G T  A  +   ++  E C+P
Sbjct: 129 LCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIE-GEICRP 187

Query: 261 DSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           D   ++++I    C+ K V +A  ++ EM E    PN+   TSLI  +    + D     
Sbjct: 188 DVVMYNTIID-GLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGL 246

Query: 320 LNRLPELGITPD 331
           LN +    + P+
Sbjct: 247 LNEMVLKNVNPN 258



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 102/232 (43%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ +   +DR  ++  ++D  ++ TLI      G     L +  +++    +P+++ Y
Sbjct: 133 GQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMY 192

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++D + + K       +Y EM +  + PN  TY SL+  +      +    +  EM  
Sbjct: 193 NTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVL 252

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           K +  +V  +NTL+      G   EA  +   M   E   PD +T+++++       +  
Sbjct: 253 KNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMM-KEGVGPDVFTYNALMDGYFLVKEAG 311

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +A+ +FN M + G   ++   + +I    K +  D+ +     +    + PD
Sbjct: 312 KAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPD 363



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/155 (18%), Positives = 73/155 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G +  A    D   +     +   +++LI     +   D  + + +++K  G++ NM 
Sbjct: 376 KSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMY 435

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D + +  R    + +++++   G + +  TY+ ++    +    ++ L++  +M
Sbjct: 436 TYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKM 495

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           ++KG       Y T++    +    D+A ++  +M
Sbjct: 496 EDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 123/267 (46%), Gaps = 3/267 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  ++ A  L D      ++ D   F+  +  Y   G  +  L++ ++MK+ G+KP+++
Sbjct: 504 KASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIV 563

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D   +AK   +      E+  NGL PN   Y +L+  YGR     D + +   M
Sbjct: 564 TYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTM 623

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+Q +   YN+L+      G  +E   +F      ++ +     ++ +I      GK
Sbjct: 624 KYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQC-IVKDIELGVIGYTIIIQGFCKIGK 682

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA   F EM   G  PN    T+L+  Y K+   ++  +  + +  LGI PD      
Sbjct: 683 IDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNT 742

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKL 364
           L++   +   + L K+VE   + +S++
Sbjct: 743 LISGFCEV--DSLDKMVESPAEMSSQV 767



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 149/328 (45%), Gaps = 7/328 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            G +++A  ++   R+ K    D + ++ +IK    AG  D    +  E++  G++P ++
Sbjct: 188 GGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVV 247

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D + ++ R  +   +   M +  + P+  T+  L+    R +   +  +V +EM
Sbjct: 248 TYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEM 307

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G+  +  +YN ++      G+  EA ++F++M  S+  +    T++ +       G+
Sbjct: 308 QGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEM-VSKGIKQTVVTYNLIAKALCKEGE 366

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ-RTDDVVRALNRLPELGITPDDRF-C 335
           +  AE + +EML AG   +  +  S++  + +   R D V+R +  +    + P+D    
Sbjct: 367 MEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMT 426

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK- 394
            C+  +      EE  ++   V      +       L     +G+  KEAT++  ++   
Sbjct: 427 ACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNS 486

Query: 395 --DVKKAYCNCLIDLCVNLNLLENACKL 420
             ++ +   N +I  C   + ++ A +L
Sbjct: 487 GVELDRITYNIMIQGCCKASKMDEAIQL 514



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 109/243 (44%), Gaps = 2/243 (0%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N    +D   ++ +I+    A   D  + + ++M   G KP++ T+N  L T     +  
Sbjct: 485 NSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVE 544

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           ++  +  +M   GL P+  TY +++  Y +A+          E+ + G++ +  +YN L+
Sbjct: 545 EILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALI 604

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G   +A  I + MK +   QP   T++S++      G V E +A+F + +    
Sbjct: 605 GGYGRNGNISDAIGILDTMKYN-GIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDI 663

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP-KEELGK 352
           E  +   T +IQ + K  + D+ V     +   GI P+      L+   +++  KEE  K
Sbjct: 664 ELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASK 723

Query: 353 LVE 355
           L +
Sbjct: 724 LFD 726



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 98/220 (44%), Gaps = 24/220 (10%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG ++ AF +    R    +     ++ L+     +G  +    +   M    V+P+++
Sbjct: 223 RAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIV 282

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+  L+  + R ++  +V  + +EM   G++PN   Y  ++  + R  +  + L ++ EM
Sbjct: 283 TFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEM 342

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC-- 274
             KG++ +V  YN +  A+C + G  + A +I ++M             + M+  CS   
Sbjct: 343 VSKGIKQTVVTYNLIAKALCKE-GEMEHAEKILDEM-----------LLAGMMVHCSLFN 390

Query: 275 ---------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
                     G++     +  EML    +PN  ++T+ IQ
Sbjct: 391 SVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQ 430



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 2/155 (1%)

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-KGMQLSVTLYNTLLAMCA 237
           + E++  G SP+  T + L+ A G     +    V+ EM++ K +   V  Y  ++    
Sbjct: 163 FLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALC 222

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  D AF +  +++ S   QP   T++ ++      G+V EA  +   M+E    P++
Sbjct: 223 RAGEIDAAFAMLAELRRS-GIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSI 281

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
                LI    + Q+  +V   L  +   GITP++
Sbjct: 282 VTFGILISGLARGQQFGEVGAVLQEMQGFGITPNE 316


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R+ N+E A  +Y       ++ D  ++  LI      G  D  L +  EM   G  P+M
Sbjct: 56  ARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSM 115

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             Y++L+  + +A+R     +++ EM   G  P+   +  L+    +A   +D    +++
Sbjct: 116 QAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQ 175

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCR 275
           M + G Q +V +YN LL      G  ++A  +F +MK S +C PD  T+++++  +C  R
Sbjct: 176 MPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMK-SHSCSPDVVTYNTLLDAVCKAR 234

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +V E   +F  M  AG+ PN+   ++LI    +    +  +     + E G  P+
Sbjct: 235 -RVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPN 289



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 9/209 (4%)

Query: 116 KWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K    PN     + L+G  ++G  +    ++ EMK+    P+++TYN LLD + +A+R  
Sbjct: 178 KHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVE 237

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   +++ M   G  PN  T+++L+    R    E  L V+  M E G + +   Y TL+
Sbjct: 238 EGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLI 297

Query: 234 AMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEML-EA 291
           +         +A E+FE M  ++ C  PD+  ++S+I     RG + EAE ++ EM   A
Sbjct: 298 SGLCRAEKVIQARELFEKM--TQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGA 355

Query: 292 GFEPNLFVLTSLIQCY---GKAQRTDDVV 317
           G +P +    +LI  +   GK  R +++V
Sbjct: 356 GLQPTIVTFNTLIDGFCKLGKLGRANELV 384



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 105/247 (42%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G +E A  L+   ++     D   ++TL+     A   +    ++E M+A G  PN+IT
Sbjct: 198 SGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVIT 257

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           ++ L+  + R     +   ++  M + G  PN  TY +L+    RA        ++ +M 
Sbjct: 258 FSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMT 317

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           +  +      YN+L+A     G  DEA +++ +M      QP   TF+++I      GK+
Sbjct: 318 QACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKL 377

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
             A  +  EM   G   +      LI    +A + D+ +    ++ E     D   C   
Sbjct: 378 GRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSF 437

Query: 339 LNVMTQT 345
           +  + +T
Sbjct: 438 VGGLCKT 444



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 18/296 (6%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +S++IK        +    V EEM A G  P++  +N ++    R+    + + +Y+ M 
Sbjct: 13  YSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMV 72

Query: 184 DNGLSPNWNTYASLLRAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           ++G  P+  +Y  L+  +G A+ G  +++L +  EM  +G   S+  Y++L+   A    
Sbjct: 73  ESGYKPDNVSYHILI--HGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARR 130

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D A  +F++M    +  PD   F  +I      GKV +A   F +M + G +PN+ V  
Sbjct: 131 VDHASSLFDEMIRGGH-HPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYN 189

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKS 360
            L+     + + +        +     +PD      LL+ + +  + E G KL E +  +
Sbjct: 190 VLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAA 249

Query: 361 NSKLGYVVKLLLEEQDIEGDFK----KEATELFNSI----SKDVKKAYCNCLIDLC 408
               GYV  ++     I G  +    ++A E+F S+     K  K  Y   +  LC
Sbjct: 250 ----GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLC 301



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 88/185 (47%), Gaps = 1/185 (0%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           M+   +  N+ TY++++ ++ +  +P +   + +EM   G +P+   +  +++ + R+  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            E    VY+ M E G +     Y+ L+   A +G  DE+ +I  +M       P    +S
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQ-TPSMQAYS 119

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           S++   +   +V  A ++F+EM+  G  P+  +   LI    +A +  D      ++P+ 
Sbjct: 120 SLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKH 179

Query: 327 GITPD 331
           G  P+
Sbjct: 180 GCQPN 184



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 2/189 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-IGVKPNM 156
           RA  V  A  L+++        D  A+++LI  Y   G+ D    +Y EM    G++P +
Sbjct: 302 RAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTI 361

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+N L+D   +  +  +   +  EM   GL+ +  TY  L+    RA   ++ L VY++
Sbjct: 362 VTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQ 421

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+EK   L      + +      G  D+A+ +FE  + S    P+  TF  +       G
Sbjct: 422 MREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKS-GAVPNPETFRILSESLIKLG 480

Query: 277 KVSEAEAMF 285
           +V +A+ + 
Sbjct: 481 RVEDAQKLM 489



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 37/254 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  VE    L++  R   +  +   FSTLI      G  +  L V+  M   G KPN  
Sbjct: 232 KARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKY 291

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  + RA++  Q + ++++MT   + P+   Y SL+  Y +    ++   +YREM
Sbjct: 292 TYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 351

Query: 218 KE-KGMQLSVTLYNTLL-------------AMCADVGYT--------------------- 242
               G+Q ++  +NTL+              + A++G                       
Sbjct: 352 SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATK 411

Query: 243 -DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            DEA E+++ M+  +         S +  +C   G + +A A+F    ++G  PN     
Sbjct: 412 LDEALEVYKQMREKKFLLDPVSCVSFVGGLCK-TGNIDQAYAVFEATRKSGAVPNPETFR 470

Query: 302 SLIQCYGKAQRTDD 315
            L +   K  R +D
Sbjct: 471 ILSESLIKLGRVED 484


>gi|224144700|ref|XP_002325381.1| predicted protein [Populus trichocarpa]
 gi|222862256|gb|EEE99762.1| predicted protein [Populus trichocarpa]
          Length = 1071

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 1/243 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T +G    A  +  R+  ++  +D  A++  IK    AG      ++YE M  +G  P++
Sbjct: 745 TNSGKHPEAENIIRRSIQDRMELDTVAYNIFIKAMLEAGRLHFATSIYEHMLLLGFTPSI 804

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN ++   GR ++  +   ++     +G+S +   Y +++  YG+A    +   ++ +
Sbjct: 805 QTYNTMISVYGRGRKLDKAVEVFNTACSSGVSLDEKAYMNMINYYGKAGKRHEASLLFAK 864

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+E+G++  V  YN +  + A  G   E  E+F+ M+  + C PDS+T+ S++   S   
Sbjct: 865 MQEEGIKPGVVSYNVMAKVYAMSGLYHEVEELFKVME-RDGCPPDSFTYLSLVQAYSESS 923

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  EAE   N M + G  P+      L+    KA    +  R    L   G+ PD   C 
Sbjct: 924 KCLEAEETINAMQKKGIPPSCAHFKHLLYALVKAGLMVEAERVYMELLSAGLNPDLVCCR 983

Query: 337 CLL 339
            +L
Sbjct: 984 AML 986



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 95/234 (40%), Gaps = 1/234 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G  E A+ LY+        +       ++     +G      N+        ++ + 
Sbjct: 710 VKCGKFEEAYLLYEEVAQRGHNLGAVGIGMVVNALTNSGKHPEAENIIRRSIQDRMELDT 769

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + YN  +  M  A R     +IY+ M   G +P+  TY +++  YGR R  +  + V+  
Sbjct: 770 VAYNIFIKAMLEAGRLHFATSIYEHMLLLGFTPSIQTYNTMISVYGRGRKLDKAVEVFNT 829

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
               G+ L    Y  ++      G   EA  +F  M+  E  +P   +++ M  + +  G
Sbjct: 830 ACSSGVSLDEKAYMNMINYYGKAGKRHEASLLFAKMQ-EEGIKPGVVSYNVMAKVYAMSG 888

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              E E +F  M   G  P+ F   SL+Q Y ++ +  +    +N + + GI P
Sbjct: 889 LYHEVEELFKVMERDGCPPDSFTYLSLVQAYSESSKCLEAEETINAMQKKGIPP 942



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 137/304 (45%), Gaps = 10/304 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A  T++  Y   G+     + Y  +K  G+  ++  YN +L ++ +     +V  ++
Sbjct: 221 DEVACGTMLCSYARWGHHKAMFSFYSAIKERGIVVSIAVYNFMLSSLQKKSLHGKVIVLW 280

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M D  ++PN  TY  ++ +  +    ++    + EM+  G+     +Y+ L+ +    
Sbjct: 281 RQMVDKRVAPNNFTYTVVISSLVKEGLHKEAFKTFNEMRTMGLVPEEVIYSLLITVSTKN 340

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA +++EDM+ S    P  +T +S++T+       S+A ++F +M       +  +
Sbjct: 341 SNWHEALKLYEDMR-SHRIVPSKFTCASLLTMYYKIKDYSKALSLFIQMQSKNIAADEVI 399

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV-MTQTPKEELGKLVECVE 358
              LI+ YGK    +D  +        G+  +++    +  V ++    E+   ++E ++
Sbjct: 400 YGLLIRIYGKLGLYEDAQKTFEETERSGLLSNEKTYLAMAQVHLSSGNFEKALSVIEVMK 459

Query: 359 KSN---SKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD--VKKAYCNCLIDLCVNLNL 413
             N   S+  Y+V  LL+   ++ D    A   F ++SK        C+ +I+L V L  
Sbjct: 460 SRNIWLSRFAYIV--LLQCYCMKEDL-DSAEVTFQALSKIGCPDAGSCSDMINLYVRLGF 516

Query: 414 LENA 417
            E A
Sbjct: 517 TEKA 520



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 1/188 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++I Y  LL   G+  +    +  + EM + G  P+     ++L +Y R  + +   S 
Sbjct: 185 PSVIVYTILLRIYGQVGKIKLAEQTFLEMLEVGCEPDEVACGTMLCSYARWGHHKAMFSF 244

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y  +KE+G+ +S+ +YN +L+         +   ++  M   +   P+++T++ +I+   
Sbjct: 245 YSAIKERGIVVSIAVYNFMLSSLQKKSLHGKVIVLWRQM-VDKRVAPNNFTYTVVISSLV 303

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G   EA   FNEM   G  P   + + LI    K     + ++    +    I P   
Sbjct: 304 KEGLHKEAFKTFNEMRTMGLVPEEVIYSLLITVSTKNSNWHEALKLYEDMRSHRIVPSKF 363

Query: 334 FCGCLLNV 341
            C  LL +
Sbjct: 364 TCASLLTM 371



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/219 (18%), Positives = 93/219 (42%), Gaps = 1/219 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            ++ L+++YG  G        + EM  +G +P+ +    +L +  R      + + Y  +
Sbjct: 189 VYTILLRIYGQVGKIKLAEQTFLEMLEVGCEPDEVACGTMLCSYARWGHHKAMFSFYSAI 248

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            + G+  +   Y  +L +  +       + ++R+M +K +  +   Y  +++     G  
Sbjct: 249 KERGIVVSIAVYNFMLSSLQKKSLHGKVIVLWRQMVDKRVAPNNFTYTVVISSLVKEGLH 308

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EAF+ F +M++     P+   +S +IT+ +      EA  ++ +M      P+ F   S
Sbjct: 309 KEAFKTFNEMRTM-GLVPEEVIYSLLITVSTKNSNWHEALKLYEDMRSHRIVPSKFTCAS 367

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           L+  Y K +     +    ++    I  D+   G L+ +
Sbjct: 368 LLTMYYKIKDYSKALSLFIQMQSKNIAADEVIYGLLIRI 406



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 86/195 (44%), Gaps = 2/195 (1%)

Query: 94   SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
            +Y  +AG    A  L+ + + E  +    +++ + K+Y  +G +     +++ M+  G  
Sbjct: 847  NYYGKAGKRHEASLLFAKMQEEGIKPGVVSYNVMAKVYAMSGLYHEVEELFKVMERDGCP 906

Query: 154  PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
            P+  TY +L+     + +  + +     M   G+ P+   +  LL A  +A    +   V
Sbjct: 907  PDSFTYLSLVQAYSESSKCLEAEETINAMQKKGIPPSCAHFKHLLYALVKAGLMVEAERV 966

Query: 214  YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            Y E+   G+   +     +L    D G+ ++  + +E ++  E  + D +  S+ + +  
Sbjct: 967  YMELLSAGLNPDLVCCRAMLRGYMDYGHVEKGIKFYEQIR--ELVKADRFIMSAAVHLYK 1024

Query: 274  CRGKVSEAEAMFNEM 288
              GK  EAE +F  M
Sbjct: 1025 SAGKKLEAEVLFESM 1039



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 125/294 (42%), Gaps = 23/294 (7%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           T+  N   A  LY+  R+   RI P+ F  ++L+ +Y    ++   L+++ +M++  +  
Sbjct: 338 TKNSNWHEALKLYEDMRSH--RIVPSKFTCASLLTMYYKIKDYSKALSLFIQMQSKNIAA 395

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + + Y  L+   G+       +  ++E   +GL  N  TY ++ + +  +   E  LSV 
Sbjct: 396 DEVIYGLLIRIYGKLGLYEDAQKTFEETERSGLLSNEKTYLAMAQVHLSSGNFEKALSVI 455

Query: 215 REMKEKGMQLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
             MK + + LS   Y  LL    M  D+   +  F+      S   C PD+ + S MI +
Sbjct: 456 EVMKSRNIWLSRFAYIVLLQCYCMKEDLDSAEVTFQAL----SKIGC-PDAGSCSDMINL 510

Query: 272 CSCRGKVSEAEAMFNEMLE--AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
               G   +A+     + +    F+  LF   ++I+ + K     D  + +  +      
Sbjct: 511 YVRLGFTEKAKDFIVHIRKYLVDFDEELF--NTVIKVFCKEGMLKDAEQLVYEMGTNASF 568

Query: 330 PDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 383
            D+RF     NVM    KE    +V       + LG ++ L LE     G+F K
Sbjct: 569 KDNRFFKTFSNVMYGENKELENIMVSA---DTTALGLILSLYLE----NGNFTK 615



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/311 (18%), Positives = 123/311 (39%), Gaps = 38/311 (12%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A   ++ LY   GNF       + +   G   ++++   L+++  R    ++ + + 
Sbjct: 596 DTTALGLILSLYLENGNFTKTEEFLKLILEAGSGLSVVS--QLVNSFIREGDLFKAEAVN 653

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            ++   G      T ASL+ AYGR    +    V+  + +  + L   + N+++  C   
Sbjct: 654 GQLIKLGSKLEDETIASLISAYGRQNKLKQAQEVFAAVADSPI-LGNPIINSMIDACVKC 712

Query: 240 GYTDEAFEIFEDMKS-------------------------SENC---------QPDSWTF 265
           G  +EA+ ++E++                           +EN          + D+  +
Sbjct: 713 GKFEEAYLLYEEVAQRGHNLGAVGIGMVVNALTNSGKHPEAENIIRRSIQDRMELDTVAY 772

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           +  I      G++  A +++  ML  GF P++    ++I  YG+ ++ D  V   N    
Sbjct: 773 NIFIKAMLEAGRLHFATSIYEHMLLLGFTPSIQTYNTMISVYGRGRKLDKAVEVFNTACS 832

Query: 326 LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384
            G++ D++    ++N   +  K  E   L   +++   K G V   ++ +         E
Sbjct: 833 SGVSLDEKAYMNMINYYGKAGKRHEASLLFAKMQEEGIKPGVVSYNVMAKVYAMSGLYHE 892

Query: 385 ATELFNSISKD 395
             ELF  + +D
Sbjct: 893 VEELFKVMERD 903


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 4/245 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G  E   GL +R R++  R  PN   ++ LI  Y  A   +    ++++M   GV PN
Sbjct: 392 KVGRQEEGLGLVERMRSQP-RCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPN 450

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++T N L+D M +  R       + EM   GL  N  TY +L+RA+      E  + ++ 
Sbjct: 451 VVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFD 510

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM E G      +Y TL++  +  G  D A  +   MK +    PD  +F+ +I     +
Sbjct: 511 EMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEA-GFSPDIVSFNVLINGFCRK 569

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            K+ EA  M  EM  AG +P+     +LI  + K        R + ++ + G+ P     
Sbjct: 570 NKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTY 629

Query: 336 GCLLN 340
           G L++
Sbjct: 630 GALIH 634



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 107/218 (49%), Gaps = 4/218 (1%)

Query: 117 WRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPW 173
           + ++P+   ++TLI      G  +  L + E M++     PN +TYN L+D   +A    
Sbjct: 374 FLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIE 433

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             + ++ +M  +G+ PN  T  +L+    +       +  + EM+ KG++ +   Y  L+
Sbjct: 434 AARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALI 493

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
               +V   ++A E+F++M  +  C PD+  + ++I+  S  GK+  A  + ++M EAGF
Sbjct: 494 RAFCNVNNIEKAMELFDEMLEA-GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGF 552

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            P++     LI  + +  + D+    L  +   GI PD
Sbjct: 553 SPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPD 590



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 107/232 (46%), Gaps = 2/232 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N+E A  L+D         D   + TLI     AG  D    V  +MK  G  P+++++N
Sbjct: 501 NIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFN 560

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L++   R  +  +   + KEM + G+ P+  TY +L+  + +         + ++M ++
Sbjct: 561 VLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKE 620

Query: 221 GMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           G+  +V  Y  L+ A C + G  DEA +IF DM S+    P++  ++ +I     + +V 
Sbjct: 621 GLVPTVVTYGALIHAYCLN-GNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVD 679

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            A ++ ++M   G +PN     ++ +   +          ++R+ E    PD
Sbjct: 680 LALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPD 731



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 11/249 (4%)

Query: 88  SKLKEKSYDTRAGNVEMAFGLYDR-ARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVY 144
           S L ++    RA + E   GL  + A +E +   PN+   + LI     +G  D   +V 
Sbjct: 237 SALSKRDKVGRAVDEEEIVGLVSKFAEHEVF---PNSIWLTQLISRLCRSGRTDRAWDVL 293

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
             +  +G      + N LL  +GRA+   ++ T+  EM +  + PN  T+  L+    + 
Sbjct: 294 HGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKF 353

Query: 205 RYGEDTLSVYREM---KEKG--MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
           R  ++ L V+ +M   +  G  ++  V  YNTL+     VG  +E   + E M+S   C 
Sbjct: 354 RRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCM 413

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           P++ T++ +I        +  A  +F++M + G  PN+  L +L+    K  R +  V  
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473

Query: 320 LNRLPELGI 328
            N +   G+
Sbjct: 474 FNEMQGKGL 482



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 5/227 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG ++ A  +  + +   +  D  +F+ LI  +      D    + +EM+  G+KP+ 
Sbjct: 532 SQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDG 591

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+    +         + K+M   GL P   TY +L+ AY      ++ + ++R+
Sbjct: 592 VTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRD 651

Query: 217 MKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           M     +  +  +YN L+         D A  + +DMK  +  +P++ TF++M      +
Sbjct: 652 MSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMK-VKGVKPNTNTFNAMFKGLQEK 710

Query: 276 GKVSEAEAMFNEMLEAGFEPNLF---VLTSLIQCYGKAQRTDDVVRA 319
             +S+A  + + M E    P+     +LT  +   G+  +    V+ 
Sbjct: 711 NWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGETAKLKSFVQG 757



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 24/197 (12%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +PN  ++N LLD             ++K    + +  + N    L+R +GRA+  +++  
Sbjct: 136 EPN--SHNKLLD-------------LFKTSKSHKIPLSVNAATLLIRCFGRAQMVDESFL 180

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITI 271
           VY E+     +    + N L+ +    G  D+A  + ++M +      P+S T   + + 
Sbjct: 181 VYNELCPS--RRLTHIRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSA 238

Query: 272 CSCRGKVSEAE------AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
            S R KV  A        + ++  E    PN   LT LI    ++ RTD     L+ L +
Sbjct: 239 LSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMK 298

Query: 326 LGITPDDRFCGCLLNVM 342
           LG   +   C  LL  +
Sbjct: 299 LGGVMEAASCNALLTAL 315


>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 426

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 119/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LS + EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSXFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA   F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSXFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 426

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  S  TL+++YG A  F   ++++  M+   ++ N++TYN ++   G+     
Sbjct: 177 KIGIEPNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    +   I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAXHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V + +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFSRMIDLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 107/213 (50%), Gaps = 1/213 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  G+     +   ++
Sbjct: 113 DTVSYSTLLTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLF 172

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YNT++ +    
Sbjct: 173 WSMRKIGIEPNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKT 232

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              ++A  + ++M +    +P++ T+S++I+I    GK+  A  +F ++  +G E +  +
Sbjct: 233 LEHEKANNLIQEMHNX-GIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVL 291

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             ++I  Y +A       R L+ L      P D
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 324



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 109/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +      D  A++++I ++G A  F    ++  EMK  GV P+ ++Y+ LL 
Sbjct: 63  AISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLT 122

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                ++  +  +++ EM +   S +  T   ++  YG+    ++   ++  M++ G++ 
Sbjct: 123 MYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEP 182

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  YNTLL +  D     EA  +F  M+  +N + +  T+++M+ I     +  +A  +
Sbjct: 183 NVISYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 242 IQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEID 288



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 97/188 (51%), Gaps = 1/188 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +STLI  +G  G FD  L+  + M+   V  +++ Y+NL++   +     +  +I+  + 
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 71

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G++P+   Y S++  +G+A+  ++  S+  EMK  G+      Y+TLL M  +     
Sbjct: 72  RSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVENQKFL 131

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +F +M+  + C  D  T + MI +        EA+ +F  M + G EPN+    +L
Sbjct: 132 EALSVFAEMREIK-CSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTL 190

Query: 304 IQCYGKAQ 311
           ++ YG A+
Sbjct: 191 LRVYGDAE 198



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP   TY++L+  +G+    +D LS  + M++  +   + LY+ L+ +   +    
Sbjct: 2   ZRALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   ++SMI +        EA ++ +EM  AG  P+    ++L
Sbjct: 62  KAISIFSRLKRS-GITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + Q+  + +     + E+  + D   C  +++V  Q
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQ 161



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 83/179 (46%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PNA  +ST+I ++G  G  D    +++++++ GV+ + + Y  ++    RA      K
Sbjct: 250 IEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAK 309

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T+++ ++ + 
Sbjct: 310 RLLHELKRPDNIPR-DTAXHILAGAGRI---EEATWVFRQAIDAGEVKDITVFSRMIDLF 365

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+F+ M+      PDS   + +  + +  GK+ E   A  ++  M + G
Sbjct: 366 SKYKKYANVVEVFDKMRGL-GYFPDS---NVIALVLNAYGKLHEFDKAHXVYMNMQDEG 420



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y+TL+      G  D+A    + M+  +    D   +S++I +       S+A ++F+ +
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQXMEQ-DRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 70

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK- 347
             +G  P+     S+I  +GKA+   +    ++ +   G+ PD      LL +  +  K 
Sbjct: 71  KRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVENQKF 130

Query: 348 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG--DFKKEATELFNSISK 394
            E L    E  E   S       +++   D+ G  D  KEA +LF S+ K
Sbjct: 131 LEALSVFAEMREIKCSLDLTTCNIMI---DVYGQLDMAKEADKLFWSMRK 177


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 118/234 (50%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+   A  ++ R  N     D +AF +++++   +G     +++   M   G+  ++ 
Sbjct: 370 KSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTDIG 429

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +   +G+ K+   + T++ +M  +G++P+  TY  ++ +YGR    +    ++ EM
Sbjct: 430 MYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEM 489

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +    +  V  YNTL+      G  DEA  +F++M+  +   PD +T+S++I       K
Sbjct: 490 EASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQ-EKGYDPDVFTYSTLIECFGKSNK 548

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V  A ++F+EM+  G  PN+     L+ C  +  +T +  +    + + G+TPD
Sbjct: 549 VDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPD 602



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 149/319 (46%), Gaps = 14/319 (4%)

Query: 122 NAFS---TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +AFS    L  L+ +  +    L +  +M+  GV  N+ T N L+   G      +   +
Sbjct: 117 DAFSYNRILALLFRSKADPGEALRLVAQMERDGVAGNISTVNLLVGMGGGGVEVARCLEL 176

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            K+    GL  N  TY  +++A+ R+R       VY EM  KG +L +  YN LL   A 
Sbjct: 177 AKKW---GLRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAK 233

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D+A+++FEDMK  + C PD++T++ +I +    G+  +  + F+EM+  G   NL 
Sbjct: 234 AGMVDQAYQVFEDMKQ-KYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLI 292

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
              ++I+  GK +  D V+  L+++ E    P+       L+++    + +L +L E ++
Sbjct: 293 AYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILAT--EGQLHRLNEVLD 350

Query: 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELF----NSISKDVKKAYCNCLIDLCVNLNLL 414
             +  L   +   L +   +     EA  +F    NS     + A+ + L  LC +   L
Sbjct: 351 ICDRYLNKSIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTL 410

Query: 415 ENACKLLELGLTLEVYTDI 433
           E A  LL +     + TDI
Sbjct: 411 E-AIDLLHMMPEKGIDTDI 428



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 14/190 (7%)

Query: 90  LKEKSYDTRAGNVEMAFG-------------LYDRARNEKWRIDPNAFSTLIKLYGTAGN 136
           + EK  DT  G   M F              L+D+ +      D   ++ +I  YG  G 
Sbjct: 419 MPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGL 478

Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196
            D    ++EEM+A   KP++ITYN L++ +G+     +   ++KEM + G  P+  TY++
Sbjct: 479 VDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYST 538

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L+  +G++   +   S++ EM  +G   ++  YN LL      G T EA + +E MK  +
Sbjct: 539 LIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMK-QQ 597

Query: 257 NCQPDSWTFS 266
              PDS T+S
Sbjct: 598 GLTPDSITYS 607



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 98/188 (52%), Gaps = 2/188 (1%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           ++++MKA G+ P++ TYN ++ + GR     +   +++EM  +   P+  TY +L+   G
Sbjct: 450 LFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLG 509

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +    ++   +++EM+EKG    V  Y+TL+         D A  +F++M  +E C P+ 
Sbjct: 510 KNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEM-IAEGCIPNI 568

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++ ++     RGK +EA   +  M + G  P+    + L +   ++QRT   +R  +R
Sbjct: 569 VTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSILERLESRSQRTAR-IRKPSR 627

Query: 323 LPELGITP 330
           +    ++P
Sbjct: 628 VTSWVVSP 635



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 35/251 (13%)

Query: 115 EKW--RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           +KW  R++   +  +++ +  +        VYEEM   G K ++  YN LLD + +A   
Sbjct: 178 KKWGLRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMV 237

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            Q   ++++M      P+  TY  L+R  G+       LS + EM  +G  L++  YNT+
Sbjct: 238 DQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTV 297

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS----------------SMITICS--- 273
           +         D+   +   M  S+ CQP+ +T+S                 ++ IC    
Sbjct: 298 IEALGKNKMVDKVIFVLSKMIESD-CQPNQFTYSLTLDILATEGQLHRLNEVLDICDRYL 356

Query: 274 ------------CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
                       C+ G  SEA  +F  M  +    +     S+++    + +T + +  L
Sbjct: 357 NKSIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLL 416

Query: 321 NRLPELGITPD 331
           + +PE GI  D
Sbjct: 417 HMMPEKGIDTD 427



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 33/266 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+  V   F +Y+    + +++D  A++ L+     AG  D    V+E+MK     P+  
Sbjct: 198 RSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDAY 257

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+   G+  + ++  + + EM   G + N   Y +++ A G+ +  +  + V  +M
Sbjct: 258 TYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKM 317

Query: 218 KEKGMQ--------------------------------LSVTLYNTLLAMCADVGYTDEA 245
            E   Q                                L+ ++Y+ L+      G+  EA
Sbjct: 318 IESDCQPNQFTYSLTLDILATEGQLHRLNEVLDICDRYLNKSIYSYLVKSLCKSGHASEA 377

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             +F  M +S     D   F SM+ +    GK  EA  + + M E G + ++ +   +  
Sbjct: 378 HNVFCRMWNSHE-SGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTDIGMYNMVFS 436

Query: 306 CYGKAQRTDDVVRALNRLPELGITPD 331
             GK ++   +    +++   GI PD
Sbjct: 437 ALGKLKQVSFISTLFDKMKASGIAPD 462



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A GL++       + D   ++TLI   G  G+ D    +++EM+  G  P++ 
Sbjct: 475 RVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVF 534

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G++ +     +++ EM   G  PN  TY  LL    R     +    Y  M
Sbjct: 535 TYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETM 594

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y+ L
Sbjct: 595 KQQGLTPDSITYSIL 609



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 59/106 (55%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+++ A  L+   + + +  D   +STLI+ +G +   D   ++++EM A G  PN++TY
Sbjct: 512 GDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTY 571

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           N LLD + R  +  +    Y+ M   GL+P+  TY+ L R   R++
Sbjct: 572 NILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSILERLESRSQ 617


>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 425

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LS++ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  IF +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 3/228 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  +DP+   F+TLI  YGTAG  + C  V  +M+  G+K ++I++ +++    +  + 
Sbjct: 431 EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKI 490

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   I  +M    ++PN   Y S++ AY  +   E  L +  +MK  G+  S+  YN L
Sbjct: 491 PEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLL 550

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           L         DEA E+   +++ +  +PD  +++++I+ C  +G   +A  +  EM + G
Sbjct: 551 LKGLCRSSQIDEAEELIYTLRN-QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 609

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             P L    +L+     A R  D+     ++    + P     G +++
Sbjct: 610 IRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 657



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 117/269 (43%), Gaps = 36/269 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G    A  ++D   +     +   ++T+I  +   G+ +    + ++M   G KPN++
Sbjct: 206 RSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVV 265

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL  + R  R  + + +  EM  + + P+  TY+ L     R    +  LS++ E 
Sbjct: 266 TYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAES 325

Query: 218 KEKGMQL-----------------------------------SVTLYNTLLAMCADVGYT 242
            +KG+ L                                   +  +YNTL+     V   
Sbjct: 326 LKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDL 385

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             AF IFE MK S + +PD  T++++I        V++AE +  EM ++G +P++    +
Sbjct: 386 RGAFCIFEQMK-SRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNT 444

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           LI  YG A + +     L+ + + GI  D
Sbjct: 445 LIDAYGTAGQLEKCFTVLSDMQQKGIKSD 473



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 105/208 (50%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y    +  G   ++E+MK+  ++P+ ITYN L++ + + +   + + +  EM 
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G+ P+  T+ +L+ AYG A   E   +V  +M++KG++  V  + +++      G   
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  I +DM   ++  P++  ++S+I      G   +A  +  +M  +G   ++     L
Sbjct: 492 EAVAILDDM-IYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLL 550

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++   ++ + D+    +  L   G+ PD
Sbjct: 551 LKGLCRSSQIDEAEELIYTLRNQGLRPD 578



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 105/235 (44%), Gaps = 5/235 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKP 154
           TR G  +    L+  A + K  +   A++  I L G    G       V+E +   G+ P
Sbjct: 310 TRTGESQTMLSLF--AESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVP 367

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
             + YN L++   + +       I+++M    + P+  TY +L+    +         + 
Sbjct: 368 TTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLV 427

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM++ G+  SV  +NTL+      G  ++ F +  DM+  +  + D  +F S++     
Sbjct: 428 MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQ-QKGIKSDVISFGSVVKAFCK 486

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            GK+ EA A+ ++M+     PN  V  S+I  Y ++  T+  +  + ++   G++
Sbjct: 487 NGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVS 541



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 109/250 (43%), Gaps = 6/250 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKP-N 155
           R  +V  AFGL   A     R D  A++ +++    AG+ D  L +   M ++ G  P +
Sbjct: 137 RHADVRAAFGLLVAA---GARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPD 193

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             +YN ++  + R+ +      ++ EM D G++PN  TY +++  + +    E    +  
Sbjct: 194 AFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRD 253

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G + +V  YN LL+     G  DE   + ++M +S +  PD +T+S +    +  
Sbjct: 254 QMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEM-ASHSMLPDGFTYSILFDGLTRT 312

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G+     ++F E L+ G     +  + L+    K  +     +    L   G+ P     
Sbjct: 313 GESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIY 372

Query: 336 GCLLNVMTQT 345
             L+N   Q 
Sbjct: 373 NTLINGYCQV 382



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 64/130 (49%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+  ++ A  L    RN+  R D  +++T+I      G+ D  L + +EM   G++P + 
Sbjct: 556 RSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLR 615

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T + L+  +  A R   ++ +Y++M    + P+ + Y  ++ AY R        S+ +EM
Sbjct: 616 TCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEM 675

Query: 218 KEKGMQLSVT 227
            EKG+    T
Sbjct: 676 SEKGIAFDDT 685



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 88/214 (41%), Gaps = 10/214 (4%)

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSS 267
           D  + +  +   G +     +N ++  C   G  D A  +   M  SE   P D+++++ 
Sbjct: 140 DVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNV 199

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I      GK S+A  +F+EM++ G  PN     ++I  + K    +   R  +++   G
Sbjct: 200 VIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDG 259

Query: 328 ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL--GYVVKLLLEEQDIEGDFKKEA 385
             P+      LL+ + +T + +  + +     S+S L  G+   +L +     G+ +   
Sbjct: 260 PKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTML 319

Query: 386 TELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 419
           +    S+ K V      C I       LL   CK
Sbjct: 320 SLFAESLKKGVMLGAYTCSI-------LLNGLCK 346


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 119/241 (49%), Gaps = 7/241 (2%)

Query: 120 DPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           D  +++T+I  L       D   +++++M   G+ P+++TYN+++  + +A+   +   +
Sbjct: 201 DVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVV 260

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
              M  NG  PN  T+ SLL  Y  +    D + V++ M   G++  V  YNTL+     
Sbjct: 261 LVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCK 320

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G + EA +IF+ M    + +P+S T+ +++   +  G + +   + + M+  G +P+ +
Sbjct: 321 NGRSMEARKIFDSMVKRGH-KPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHY 379

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-----EELGKL 353
           +   LI  Y K  + DD +   +++   G+ PD    G +++ +    K      + G+L
Sbjct: 380 IFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRL 439

Query: 354 V 354
           +
Sbjct: 440 I 440



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 144/334 (43%), Gaps = 12/334 (3%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A+ L+D+  ++    D   ++++I     A   D    V   M   G  PN IT+N+
Sbjct: 219 LDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS 278

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LL     + +P     ++K M  +G+ P+  TY +L+    +     +   ++  M ++G
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            + +   Y TLL   A  G   +   +  DM      QPD + F+ +I   +  GKV +A
Sbjct: 339 HKPNSATYGTLLHGYATEGSLVKMHHLL-DMMVRNGIQPDHYIFNILIGTYTKHGKVDDA 397

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             +F++M   G  P+      ++       + DD +    RL   G+TPD      L++ 
Sbjct: 398 MLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHG 457

Query: 342 MTQTPK----EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV 396
           +    K    EEL   VE + +           LL     EG   + A  +F+ + + DV
Sbjct: 458 LCARDKWDKAEELA--VEMIGRGICPNNIFFNTLLNHLCKEGMVAR-AKNIFDLMVRVDV 514

Query: 397 KKAYC--NCLIDLCVNLNLLENACKLLELGLTLE 428
           ++     N LID       ++ A KLLE G+ L+
Sbjct: 515 QRDVITYNTLIDGYCLHGKVDEAAKLLE-GMVLD 547



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 7/213 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  ++D       + D   ++TLI  Y   G  D    + E M   GVKPN +
Sbjct: 495 KEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEV 554

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN +++   +  R     +++++M   G++P   TY+++L+   +AR       +Y  M
Sbjct: 555 TYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWM 614

Query: 218 KEKGMQLSVTLYN-TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + G++  +  YN  LL +C +   TD+A  IF+++   +    ++ TF+ MI      G
Sbjct: 615 IKSGIKFDIGTYNIILLGLCQN-NCTDDALRIFQNLYLID-FHLENRTFNIMIDALLKGG 672

Query: 277 KVSEAEAMFNEMLEAGFEPNL----FVLTSLIQ 305
           +  EA+ +F  +L  G  PN+     ++ SLI+
Sbjct: 673 RHDEAKDLFASLLARGLVPNVVTYWLMMKSLIE 705



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 3/218 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+ G V+ A  L+ + R +    D   +  ++      G  D  +  +  + + G+ P+ 
Sbjct: 389 TKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDA 448

Query: 157 ITYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + + NL+  +  A+  W + + +  EM   G+ PN   + +LL    +        +++ 
Sbjct: 449 VVFRNLIHGLC-ARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFD 507

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M    +Q  V  YNTL+      G  DEA ++ E M   +  +P+  T+++MI      
Sbjct: 508 LMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGM-VLDGVKPNEVTYNTMINGYCKN 566

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
           G++ +A ++F +M   G  P +   ++++Q   +A+RT
Sbjct: 567 GRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRT 604



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/254 (19%), Positives = 108/254 (42%), Gaps = 1/254 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G V+ A   + R  +E    D   F  LI        +D    +  EM   G+ PN I 
Sbjct: 426 VGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIF 485

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N LL+ + +     + K I+  M    +  +  TY +L+  Y      ++   +   M 
Sbjct: 486 FNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMV 545

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G++ +   YNT++      G  ++AF +F  M +S+   P   T+S+++       + 
Sbjct: 546 LDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQM-ASKGVNPGIVTYSTILQGLFQARRT 604

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
           + A+ ++  M+++G + ++     ++    +   TDD +R    L  +    ++R    +
Sbjct: 605 AAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIM 664

Query: 339 LNVMTQTPKEELGK 352
           ++ + +  + +  K
Sbjct: 665 IDALLKGGRHDEAK 678



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDT 210
           V PN+ITY+ ++D   R             +  +G +    T++ LL+A   + R  E  
Sbjct: 87  VPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAM 146

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ----PDSWTFS 266
               R M   G   +V  Y  LL    D   + +A  +   M  +++ +    PD  +++
Sbjct: 147 DIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYN 206

Query: 267 SMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++I      G+ +  A  +F++ML+ G  P++    S+I    KA+  D     L R+ +
Sbjct: 207 TVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVK 266

Query: 326 LGITPD 331
            G  P+
Sbjct: 267 NGAMPN 272


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 14/197 (7%)

Query: 186 GLSPNWN------TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           GL   W+      TY  LL+A+ R+R  +   +VY EM  KG QL +  YN LL   A  
Sbjct: 228 GLIKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKD 287

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              D ++++F+DMK  ++C PD +T++ MI +    G+  E+ A+F EML  G  PNL  
Sbjct: 288 EQLDRSYKVFKDMKL-KHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIA 346

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
             ++IQ   K+   D  +     + +    P++     +LNV+    + +LG+L E +E 
Sbjct: 347 YNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVL--VAEGQLGRLDEVLEV 404

Query: 360 SN-----SKLGYVVKLL 371
           SN     S   Y+V+ L
Sbjct: 405 SNKFINKSIYAYLVRTL 421



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D +A+ ++++     G     + +  ++   G+  + + YN +L T+G+ K+   +  +Y
Sbjct: 445 DRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLY 504

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M  +G  P+  TY  L+ + GR    ++ + V+ E++    +  +  YN+L+      
Sbjct: 505 EKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKN 564

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  DEA   F +M+  +   PD  T+S++I       KV  A ++F+ M+  G  PN+  
Sbjct: 565 GDVDEAHMRFLEMQ-DKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVT 623

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              L+ C  +A RT + V    +L E G+TPD
Sbjct: 624 YNILLDCLERAGRTAETVDLYAKLREQGLTPD 655



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 104/193 (53%), Gaps = 12/193 (6%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           ++E+  GL      +KW +  NA++   L++ +  + + D   NVY EM + G + ++  
Sbjct: 222 DLELCTGLI-----KKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSKGYQLDIFA 276

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN LLD + + ++  +   ++K+M     +P+  TY  ++R  G+    E++L+++ EM 
Sbjct: 277 YNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEML 336

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            KG   ++  YNT++   +  G  D+A  +F +M  + NC+P+ +T+S ++ +    G++
Sbjct: 337 TKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKN-NCRPNEFTYSIILNVLVAEGQL 395

Query: 279 SEAEAMFNEMLEA 291
                  +E+LE 
Sbjct: 396 GR----LDEVLEV 404



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 1/159 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           LY++ + +    D   ++ LI   G  G     + V+EE+++   KP++I+YN+L++ +G
Sbjct: 503 LYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLG 562

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     +    + EM D GL+P+  TY++L+  +G+    E   S++  M  +G   ++ 
Sbjct: 563 KNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIV 622

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            YN LL      G T E  +++  ++  +   PDS T++
Sbjct: 623 TYNILLDCLERAGRTAETVDLYAKLR-EQGLTPDSITYA 660



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 123/287 (42%), Gaps = 33/287 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  E +  L++    +    +  A++T+I+    +G  D  + ++  M     +PN  
Sbjct: 321 KMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEF 380

Query: 158 TYNNLLDTM------GRAKRPWQV------KTIY----KEMTDNGLSPN--------W-- 191
           TY+ +L+ +      GR     +V      K+IY    + ++  G S          W  
Sbjct: 381 TYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSF 440

Query: 192 ------NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
                 + Y S+L +  R     + + +  ++ EKG+     +YNT+L+    +      
Sbjct: 441 HDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHL 500

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            +++E MK  +   PD +T++ +I+     GKV EA  +F E+  +  +P++    SLI 
Sbjct: 501 HDLYEKMKQ-DGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLIN 559

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
           C GK    D+       + + G+ PD      L+    +T K E+ +
Sbjct: 560 CLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMAR 606



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 128/301 (42%), Gaps = 15/301 (4%)

Query: 30  DDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNP----QYPHGKTGSSPKSYIWVNPKSP 85
           DD  S  S +  Q  SVSL   ++S   K   +P    Q+ H  +   PK        S 
Sbjct: 116 DDRFSDLS-SYFQSLSVSLTPAEASEILKSLNSPDLALQFFHRCSSLCPKFRHDAFTYSR 174

Query: 86  RASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 145
               L   S   R   V       DR   ++ R   +  + LIK++ +  + + C  +  
Sbjct: 175 ILLMLSHSSSSKRIDQVREILSQMDR---DQIRGTISTVNILIKIFSSNEDLELCTGL-- 229

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
            +K   ++ N  TY  LL    R++   +   +Y EM   G   +   Y  LL A  +  
Sbjct: 230 -IKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDE 288

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             + +  V+++MK K        Y  ++ M   +G  +E+  +FE+M  ++ C P+   +
Sbjct: 289 QLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEML-TKGCTPNLIAY 347

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF---VLTSLIQCYGKAQRTDDVVRALNR 322
           ++MI   S  G V +A  +F  M++    PN F   ++ +++   G+  R D+V+   N+
Sbjct: 348 NTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNK 407

Query: 323 L 323
            
Sbjct: 408 F 408



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/261 (19%), Positives = 116/261 (44%), Gaps = 22/261 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+ + + AF +Y    ++ +++D  A++ L+         D    V+++MK     P+  
Sbjct: 251 RSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEY 310

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++   G+  R  +   +++EM   G +PN   Y ++++A  ++   +  + ++  M
Sbjct: 311 TYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNM 370

Query: 218 KEKGMQLSVTLYNTLLAMCA---DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +   + +   Y+ +L +      +G  DE  E+        N   +   ++ ++   S 
Sbjct: 371 IKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEV-------SNKFINKSIYAYLVRTLSK 423

Query: 275 RGKVSEAEAMFNEM--LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            G  SEA  +F  M     G + + ++  S+++   +  +T + +  L+++ E GI+ D 
Sbjct: 424 LGHSSEAHRLFCNMWSFHDGGDRDAYI--SMLESLCRGGKTVEAIELLSKVHEKGISTD- 480

Query: 333 RFCGCLLNVMTQTPKEELGKL 353
                   +M  T    LGKL
Sbjct: 481 -------TMMYNTVLSTLGKL 494



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 56/102 (54%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+V+ A   +   +++    D   +STLI+ +G     +   ++++ M   G  PN++
Sbjct: 563 KNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIV 622

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           TYN LLD + RA R  +   +Y ++ + GL+P+  TYA L R
Sbjct: 623 TYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAILDR 664


>gi|218194011|gb|EEC76438.1| hypothetical protein OsI_14128 [Oryza sativa Indica Group]
          Length = 669

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 179/402 (44%), Gaps = 12/402 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L +++G  G F   + ++++M    V+P++ T  N++   GR       + + 
Sbjct: 190 DTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVL 249

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +T  G+ P    Y  L+ A G A   E+    +  M E G   ++  YN L    A  
Sbjct: 250 DYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKG 309

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLF 298
           G   EA  IF  M ++   Q D  +F ++I    C+G ++ +A   + EM ++ F P+  
Sbjct: 310 GLFQEAEAIFSRMTNNAAIQKDKDSFDALIE-AYCQGAQLDDAVKAYMEMRKSRFNPDER 368

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 357
            L  ++  Y  A   D+       L  +   P       +L++  +  +  +   L+E +
Sbjct: 369 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 428

Query: 358 E--KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNL 413
           +  +++S    +  ++  E D + +++     L NS  +  D    + N L+D+      
Sbjct: 429 KTNRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQ 488

Query: 414 LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEE 473
              A ++L+  L   ++ ++   +   WS  +  +S+G +L A+ +W+N L   L+  E+
Sbjct: 489 KGRAARVLDQALKYGLFPELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDED 548

Query: 474 FPPLLGINTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 510
            P L  +    G+ + S   +GL  A V  S L + L++ FH
Sbjct: 549 LPQLASVVVLRGQMEKSTVTRGLPIAKVVYSFLNDTLSSSFH 590



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 5/231 (2%)

Query: 103 EMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           +M  GL+   R++     R D   ++TL+         D    +   M   GV P+  +Y
Sbjct: 31  DMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASY 90

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +++D    A    +V  ++ EM   G +P+ + Y  L+ A+ R     + ++V R+M+ 
Sbjct: 91  RHIVDAFAGAGNLSRVAELFAEMAATGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQA 150

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +   Y  LL +    G  D   E+F +M+++    PD+ T++ +  +    G   
Sbjct: 151 DGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT--VPPDTATYNVLFRVFGDGGFFK 208

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           E   +F +ML +  EP++    +++   G+    +D    L+ +   G+ P
Sbjct: 209 EVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVP 259



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 9/202 (4%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPW----QVKTIYKEMTDN---GLSPNWNTYASLLR 199
           MKA GV P   TYN +L    RA  P      +  ++ EM  +    + P+  TY +LL 
Sbjct: 1   MKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLA 60

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
           A       + +  + R M E G+      Y  ++   A  G      E+F +M ++ +  
Sbjct: 61  AAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHT- 119

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           PD   +  ++   +  G  +EA A+  +M   G  P       L+  YG+  R D  VR 
Sbjct: 120 PDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDG-VRE 178

Query: 320 LNRLPELGITPDDRFCGCLLNV 341
           L R     + PD      L  V
Sbjct: 179 LFREMRTTVPPDTATYNVLFRV 200



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 4/193 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  E A  + D    E       A++ L++  G A  ++     +  M  IG  P + 
Sbjct: 238 RGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIE 297

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN L +   +     + + I+  MT+N  +  + +++ +L+ AY +    +D +  Y E
Sbjct: 298 TYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYME 357

Query: 217 MKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           M++        +L   L A C   G  DE+ E FE+++S     P    +  M+++ +  
Sbjct: 358 MRKSRFNPDERSLEGVLNAYCI-AGVIDESKEQFEELQSMVTV-PSIIAYCMMLSLYARN 415

Query: 276 GKVSEAEAMFNEM 288
            + ++A  +  EM
Sbjct: 416 DRWTDAYDLLEEM 428


>gi|115456295|ref|NP_001051748.1| Os03g0824100 [Oryza sativa Japonica Group]
 gi|113550219|dbj|BAF13662.1| Os03g0824100, partial [Oryza sativa Japonica Group]
          Length = 691

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 179/402 (44%), Gaps = 12/402 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L +++G  G F   + ++++M    V+P++ T  N++   GR       + + 
Sbjct: 212 DTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVL 271

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +T  G+ P    Y  L+ A G A   E+    +  M E G   ++  YN L    A  
Sbjct: 272 DYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKG 331

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLF 298
           G   EA  IF  M ++   Q D  +F ++I    C+G ++ +A   + EM ++ F P+  
Sbjct: 332 GLFQEAEAIFSRMTNNAAIQKDKDSFDALIE-AYCQGAQLDDAVKAYMEMRKSRFNPDER 390

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 357
            L  ++  Y  A   D+       L  +   P       +L++  +  +  +   L+E +
Sbjct: 391 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 450

Query: 358 E--KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNL 413
           +  +++S    +  ++  E D + +++     L NS  +  D    + N L+D+      
Sbjct: 451 KTNRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQ 510

Query: 414 LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEE 473
              A ++L+  L   ++ ++   +   WS  +  +S+G +L A+ +W+N L   L+  E+
Sbjct: 511 KGRAARVLDQALKYGLFPELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDED 570

Query: 474 FPPLLGINTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 510
            P L  +    G+ + S   +GL  A V  S L + L++ FH
Sbjct: 571 LPQLASVVVLRGQMEKSTVTRGLPIAKVVYSFLNDTLSSSFH 612



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 103/231 (44%), Gaps = 5/231 (2%)

Query: 103 EMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           +M  GL+   R++     R D   ++TL+         D    +   M   GV P+  +Y
Sbjct: 53  DMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASY 112

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +++D    A    +V  ++ EM+  G +P+ + Y  L+ A+       + ++V R+M+ 
Sbjct: 113 RHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQA 172

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +   Y  LL +    G  D   E+F +M+++    PD+ T++ +  +    G   
Sbjct: 173 DGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT--VPPDTATYNVLFRVFGDGGFFK 230

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           E   +F +ML +  EP++    +++   G+    +D    L+ +   G+ P
Sbjct: 231 EVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVP 281



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 4/193 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  E A  + D    E       A++ L++  G A  ++     +  M  IG  P + 
Sbjct: 260 RGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIE 319

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN L +   +     + + I+  MT+N  +  + +++ +L+ AY +    +D +  Y E
Sbjct: 320 TYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYME 379

Query: 217 MKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           M++        +L   L A C   G  DE+ E FE+++S     P    +  M+++ +  
Sbjct: 380 MRKSRFNPDERSLEGVLNAYCI-AGVIDESKEQFEELQSMVTV-PSIIAYCMMLSLYARN 437

Query: 276 GKVSEAEAMFNEM 288
            + ++A  +  EM
Sbjct: 438 DRWTDAYDLLEEM 450



 Score = 38.9 bits (89), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 18/249 (7%)

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFE 250
           +Y SL+ AY R    E+   +  +MK  G+  +     ++ LL + A++ +         
Sbjct: 14  SYTSLIAAYARNALHEEARELLDQMKASGVAPTDPPVPFDMLLGLFAEMRH--------- 64

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
               S + +PD  T+++++   + R    ++E +   MLEAG  P+      ++  +  A
Sbjct: 65  --DPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGA 122

Query: 311 QRTDDVVRALNRLPELGITPD-DRFCGCL-LNVMTQTPKEELGKLVECVEKSNSKLGYVV 368
                V      +   G TPD   + G +  + +     E +  L +             
Sbjct: 123 GNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATY 182

Query: 369 KLLLEEQDIEGDFKKEATELFNSISKDV--KKAYCNCLIDLCVNLNLLENACKLLELGLT 426
           ++LL+    +G F     ELF  +   V    A  N L  +  +    +   +L +  L 
Sbjct: 183 RVLLDLYGRQGRFDG-VRELFREMRTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLH 241

Query: 427 LEVYTDIQS 435
            EV  DI +
Sbjct: 242 SEVEPDIDT 250


>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           micrantha]
          Length = 406

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 149 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 208

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 209 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 268

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 269 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 323

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 324 AKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLN 370



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 35  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 94

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 95  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 154

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 155 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 214

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 215 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 273

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 274 AGLVAHAKRLLHELKRPDNIPRD 296



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 15  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 74

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 75  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 134

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 135 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 193

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SMI I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 194 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 253

Query: 325 ELGITPD 331
             G+  D
Sbjct: 254 SSGVEID 260



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 273 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEAKDIT 328

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+ +  +    VY EM
Sbjct: 329 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 388

Query: 218 KEKGMQLSVTLYNTLLAM 235
           +E G   S  ++  +L++
Sbjct: 389 QEVGCVFSDEVHFQMLSL 406


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 116/230 (50%), Gaps = 4/230 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN + A  ++ R + +  +     ++ LI L+G A      L ++ EM++   KPN+ 
Sbjct: 230 KAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNIC 289

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R     + + I++++ ++G  P+   Y +L+ AY RA +      ++  M
Sbjct: 290 TYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLM 349

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN ++      G  ++A  +FE+MK      P   +   +++  S  G 
Sbjct: 350 QHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRL-GITPTMKSHMLLLSAYSKAGD 408

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLP 324
           V++ E + NE+ E+G EP+ FVL S++  YG+     + ++V+ A+   P
Sbjct: 409 VAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGP 458



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L+K Y T+G  +    ++ EM+  G+ P+ I YN  +D + +A  P +   I++ 
Sbjct: 184 DTYALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQR 243

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +   P+  TY  L+  +G+A      L ++ EM+ +  + ++  Y  L+   A  G 
Sbjct: 244 MKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGL 303

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A EIFE ++   + +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 304 CEKAEEIFEQLQEDGH-EPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYN 362

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
            ++  YG+    +D       +  LGITP
Sbjct: 363 IMVDAYGRGGLHEDAQAVFEEMKRLGITP 391



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 109/234 (46%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A    MA  L++  R++K + +   ++ L+  +   G  +    ++E+++  G +P++ 
Sbjct: 265 KASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVY 324

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L++   RA  P+    I+  M   G  P+  +Y  ++ AYGR    ED  +V+ EM
Sbjct: 325 AYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEM 384

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+  ++  +  LL+  +  G   +  +I  ++  S   +PD++  +SM+ +    G+
Sbjct: 385 KRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHES-GLEPDTFVLNSMLNLYGRLGQ 443

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + E +   M    +  ++     LI  YG+A   + +      L    + PD
Sbjct: 444 FGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPD 497



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 7/182 (3%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           + +++ +N ++D  GR       +T Y E+ +    P  +TYA LL+AY  +   E   +
Sbjct: 145 QSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGLLEKAEA 204

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           ++ EM++ G+  S  +YN  +      G    A EIF+ MK  + CQP + T++ +I + 
Sbjct: 205 IFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMK-RDCCQPSTETYTLLINL- 262

Query: 273 SCRGKVSE---AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
              GK S+   A  +FNEM     +PN+   T+L+  + +    +       +L E G  
Sbjct: 263 --HGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHE 320

Query: 330 PD 331
           PD
Sbjct: 321 PD 322



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 109/229 (47%), Gaps = 4/229 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG    A  ++   ++     D  +++ ++  YG  G  +    V+EEMK +G+ P M
Sbjct: 334 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTM 393

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            ++  LL    +A    + + I  E+ ++GL P+     S+L  YGR         V   
Sbjct: 394 KSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTA 453

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+       ++ YN L+ +    G+ ++   +F+ + +++N +PD  T++S +   S + 
Sbjct: 454 MESGPYATDISTYNILINIYGRAGFFEKMEGLFQSL-AAKNLKPDVVTWTSRLGAYSRKK 512

Query: 277 KVSEAEAMFNEMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNR 322
             ++   +F EM++AG  P+     VL S      + ++   V+R +++
Sbjct: 513 LYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTVIRTMHK 561


>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 426

 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LS++ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSXGVDID 288



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  IF +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYX 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 26/299 (8%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +F+TLI  Y  +GN D    +   M    V P++ TY+ L++ + +  +      ++ EM
Sbjct: 262 SFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEM 321

Query: 183 TDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            D GL PN  T+ +L+  +   GRA  G   + +Y++M  KG++  V  YNTL+     V
Sbjct: 322 CDRGLVPNDVTFTTLINGHCVTGRADLG---MEIYQQMLRKGVKPDVITYNTLINGLCKV 378

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++  +M +    +PD +T++ +I  C   G +  A  +  EM++ G E +   
Sbjct: 379 GDLREAKKLVIEM-TQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVA 437

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
            T+LI  + +  +  +  R L  + E GI PDD     +++   +              K
Sbjct: 438 FTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCK--------------K 483

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEAT--ELFNSISKDVKKAYCNCLIDLCVNLNLLEN 416
            + K G+    LL+E   +G      T   L N + K  +    N L+D  +NL ++ +
Sbjct: 484 GDVKTGFK---LLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPD 539



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 3/214 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TLI  +   G  D  + +Y++M   GVKP++ITYN L++ + +     + K +
Sbjct: 328 PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKL 387

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EMT  GL P+  TY  L+    +    E  L + +EM ++G++L    +  L++    
Sbjct: 388 VIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCR 447

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA     +M  +   +PD  T++ +I     +G V     +  EM   G  P + 
Sbjct: 448 EGQVIEAERTLREMLEA-GIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVV 506

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
               L+    K  +  +    L+ +  LG+ PDD
Sbjct: 507 TYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDD 540



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 1/212 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN++  F L       +   D   +S LI      G  D    ++ EM   G+ PN +
Sbjct: 272 KSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDV 331

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+  L++      R      IY++M   G+ P+  TY +L+    +     +   +  EM
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEM 391

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++     Y  L+  C   G  + A EI ++M   E  + D+  F+++I+     G+
Sbjct: 392 TQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEM-VKEGIELDNVAFTALISGFCREGQ 450

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           V EAE    EMLEAG +P+    T +I  + K
Sbjct: 451 VIEAERTLREMLEAGIKPDDATYTMVIHGFCK 482



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 1/198 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G  ++   +Y +   +  + D   ++TLI      G+      +  EM   G+KP+  T
Sbjct: 343 TGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFT 402

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+D   +         I KEM   G+  +   + +L+  + R     +     REM 
Sbjct: 403 YTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREML 462

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E G++     Y  ++      G     F++ ++M+   +  P   T++ ++     +G++
Sbjct: 463 EAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHV-PGVVTYNVLLNGLCKQGQM 521

Query: 279 SEAEAMFNEMLEAGFEPN 296
             A  + + ML  G  P+
Sbjct: 522 KNANMLLDAMLNLGVVPD 539



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 105/278 (37%), Gaps = 15/278 (5%)

Query: 56  PTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNE 115
           PT H  +P        ++    I V+P  P  S LK         +      L D     
Sbjct: 30  PTSHCHDPIL------TTISEAIKVSPTKPLHSSLKRILPSLTPNH------LIDLINLN 77

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQ 174
              + P +  +  K   T  +F   ++ Y  M        M++   +LL  +   K    
Sbjct: 78  PHSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNS 137

Query: 175 VKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             +++  + +  G   +   ++ L+ AY  + Y  D +  +R +++  +Q+       L 
Sbjct: 138 ASSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLF 197

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                +  T  A+  +E++       PD   F+ ++       K++EA+ +F E+ + G 
Sbjct: 198 DRLMKLNLTSPAWAFYEEILDC-GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGL 256

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            P +    +LI  Y K+   D   R    + E  + PD
Sbjct: 257 RPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPD 294



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/172 (19%), Positives = 71/172 (41%), Gaps = 1/172 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++  A  L         + D   ++ LI      G+ +  L + +EM   G++ + +
Sbjct: 377 KVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNV 436

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  L+    R  +  + +   +EM + G+ P+  TY  ++  + +    +    + +EM
Sbjct: 437 AFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEM 496

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +  G    V  YN LL      G    A  + + M +     PD  T++ ++
Sbjct: 497 QCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL-GVVPDDITYNILL 547


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 14/255 (5%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           GL  +  TY  +++A+ R+R       VY EM+ KG +L +  YN LL   A  G  D+A
Sbjct: 181 GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQA 240

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           F++FEDMK  ++C PD++T++ +I +    G+ S+  + F+EM+  G   NL    ++I+
Sbjct: 241 FQVFEDMK-QKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIE 299

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEELGKLVECVEK--SNS 362
             GK +  D V+  L+++ E    P+       L+++ T+     L ++++   +  + S
Sbjct: 300 ALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRS 359

Query: 363 KLGYVVKLLLEEQDIEGDFKKEATELF----NSISKDVKKAYCNCLIDLCVNLNLLENAC 418
              Y+VK L      +     EA  +F    NS  K  + A+ + L  LC     LE A 
Sbjct: 360 IYSYLVKSL-----CKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLE-AI 413

Query: 419 KLLELGLTLEVYTDI 433
            LL +     + TD+
Sbjct: 414 DLLHMMPEKGIVTDV 428



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 125/263 (47%), Gaps = 37/263 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+   A  ++ R  N   + D +AF +++++   A      +++   M   G+  ++ 
Sbjct: 370 KSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVG 429

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +   +G+ K+   +  ++ +M  NG+ P+  TY  ++ +YGR              
Sbjct: 430 MYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR-------------- 475

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
                                VG  D+A E+FE M++S +C+PD  T++S+I      G 
Sbjct: 476 ---------------------VGLVDKASELFEVMEAS-SCKPDVVTYNSLINCLGKHGD 513

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F EM E G++P++F  + LI+C+GK+ + +      + +   G TP+      
Sbjct: 514 LDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNI 573

Query: 338 LLNVMTQTPK-EELGKLVECVEK 359
           LL+ + +  K EE  KL E +++
Sbjct: 574 LLDCLERRGKTEEAHKLYETMKQ 596



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 1/159 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+D+ +      D   ++ +I  YG  G  D    ++E M+A   KP+++TYN+L++ +G
Sbjct: 450 LFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLG 509

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     +   ++KEM + G  P+  TY+ L+  +G++   E   S++ EM  +G   ++ 
Sbjct: 510 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 569

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            YN LL      G T+EA +++E MK  +   PDS T+S
Sbjct: 570 TYNILLDCLERRGKTEEAHKLYETMK-QQGLIPDSITYS 607



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 1/172 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           N++++MK  G+ P++ TYN ++ + GR     +   +++ M  +   P+  TY SL+   
Sbjct: 449 NLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCL 508

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           G+    ++   +++EM+EKG    V  Y+ L+         + A  +F++M  SE C P+
Sbjct: 509 GKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEM-ISEGCTPN 567

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
             T++ ++     RGK  EA  ++  M + G  P+    + L +   ++QRT
Sbjct: 568 IVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQRT 619



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 6/235 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+  V   F +Y+  R + +++D  A++ L+     AG  D    V+E+MK     P+  
Sbjct: 198 RSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAY 257

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+   G+A R  +  + + EM   G   N   + +++ A G+ +  +  + V  +M
Sbjct: 258 TYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKM 317

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-G 276
            E   Q +   Y+  L + A  G      E+ +      N    S+   S+     C+ G
Sbjct: 318 VENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSL-----CKSG 372

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SEA  +F  M  +  + +     S+++    A++T + +  L+ +PE GI  D
Sbjct: 373 HASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTD 427



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  L++       + D   +++LI   G  G+ D    +++EM+  G  P++ 
Sbjct: 475 RVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVF 534

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G++ +     +++ EM   G +PN  TY  LL    R    E+   +Y  M
Sbjct: 535 TYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETM 594

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y+ L
Sbjct: 595 KQQGLIPDSITYSIL 609



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 59/108 (54%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ A  L+   + + +  D   +S LI+ +G +   +   ++++EM + G  PN++
Sbjct: 510 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 569

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           TYN LLD + R  +  +   +Y+ M   GL P+  TY+ L R   R++
Sbjct: 570 TYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQ 617


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 6/229 (2%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAK 170
           K RI PN   F+  I     AG  +   +V E++KA G  PN++TYN L+D     G A 
Sbjct: 193 KRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAG 252

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
           + ++   I KEM  N + PN  T+ +L+  + +        + + EM+ +G++ ++  YN
Sbjct: 253 KMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYN 312

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           +L+   ++ G  DEA  +++ M      +P+  TF+++I     +  + EA  +F+++ E
Sbjct: 313 SLINGLSNNGKLDEAIALWDKM-VGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAE 371

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
               PN     ++I  + KA   ++     N + + GI P+     CL+
Sbjct: 372 QDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLI 420



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 6/220 (2%)

Query: 117 WRIDPN--AFSTLIKLY---GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           W   PN   ++TLI  +   G+AG       + +EM A  + PN IT+N L+D   + + 
Sbjct: 229 WGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDEN 288

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
               K  ++EM   GL PN  TY SL+         ++ ++++ +M   G++ ++  +N 
Sbjct: 289 VLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNA 348

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           L+          EA ++F+D+ + ++  P++ TF++MI      G + E  A+ N ML+ 
Sbjct: 349 LINGFCKKKMIKEARKLFDDI-AEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDE 407

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G  PN+     LI    + Q      + LN +    +  D
Sbjct: 408 GIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKAD 447



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 108/207 (52%), Gaps = 1/207 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           NV  A   ++  + +  + +   +++LI      G  D  + ++++M  +G+KPN++T+N
Sbjct: 288 NVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFN 347

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L++   + K   + + ++ ++ +  L PN  T+ +++ A+ +A   E+  +++  M ++
Sbjct: 348 ALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDE 407

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+  +V+ YN L+A          A ++  +M++ E  + D  T++ +I      G+ S+
Sbjct: 408 GIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE-LKADVVTYNILIGGWCKDGEPSK 466

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           AE +  EML  G +PN     +L+  Y
Sbjct: 467 AEKLLGEMLNVGVKPNHVTYNTLMDGY 493



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 16/246 (6%)

Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +I PN   F+TLI  +    N     N +EEM+  G+KPN++TYN+L++ +    +  + 
Sbjct: 268 KICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEA 327

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             ++ +M   GL PN  T+ +L+  + + +  ++   ++ ++ E+ +  +   +NT++  
Sbjct: 328 IALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDA 387

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  +E F +   M   E   P+  T++ +I        V  A+ + NEM     + 
Sbjct: 388 FCKAGMMEEGFALHNSM-LDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKA 446

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC--GCL---LNVM 342
           ++     LI  + K        + L  +  +G+ P+        D +C  G L   L V 
Sbjct: 447 DVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVR 506

Query: 343 TQTPKE 348
           TQ  KE
Sbjct: 507 TQMEKE 512



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 122 NAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           NA  T  L+  Y T         V+  ++  G K ++ + N LL  + +     +++ +Y
Sbjct: 129 NALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVY 188

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMC-- 236
           KEM    + PN  T+   +    +A        V  ++K  G   ++  YNTL+   C  
Sbjct: 189 KEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKK 248

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G    A  I ++M +++ C P+  TF+++I        V  A+  F EM   G +PN
Sbjct: 249 GSAGKMYRADAILKEMLANKIC-PNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPN 307

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           +    SLI       + D+ +   +++  LG+ P+      L+N
Sbjct: 308 IVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALIN 351



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 52/234 (22%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E  F L++   +E    + + ++ LI       N      +  EM+   +K +++
Sbjct: 390 KAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVV 449

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+    +   P + + +  EM + G+ PN  TY +L+  Y      +  L V  +M
Sbjct: 450 TYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQM 509

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +++G + +V  YN L+      G+                C+                GK
Sbjct: 510 EKEGKRANVVTYNVLIK-----GF----------------CKT---------------GK 533

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +A  + NEMLE G  PN              + T DVVR    + E G  PD
Sbjct: 534 LEDANRLLNEMLEKGLNPN--------------RTTYDVVRL--EMLEKGFIPD 571


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 123/243 (50%), Gaps = 1/243 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  L +  +     ++   ++TLI  Y   G  D    V   M+  G + ++ 
Sbjct: 83  KAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIY 142

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N + D + +  +P + K     M + G+ PN  +Y +L+  Y +     +   +++EM
Sbjct: 143 TLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEM 202

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+ G + +   YN L+   +  G   EA+E+ ++M+ ++   PD +T++S++      GK
Sbjct: 203 KKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMR-AKGIFPDIYTYTSLLHGECIFGK 261

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +A  +FNE+ + G   N+   T++I    K  R+++  +  + + E G+TPDDR    
Sbjct: 262 LDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTS 321

Query: 338 LLN 340
           L++
Sbjct: 322 LVS 324



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 40/245 (16%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPWQVKTIYK 180
           ++ LI  +G++G  D    ++EEM   G+K ++  Y  +++    +G  KR +    ++ 
Sbjct: 4   YTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAF---ALFD 60

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           E+T+ GL  N +TY +L+    +A   E    +  EM+ +G+ ++  +YNTL+      G
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 241 YTDEAF--EIFEDMKSSEN--------------------------------CQPDSWTFS 266
             DEAF  ++  + K  EN                                  P+  +++
Sbjct: 121 LIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYT 180

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           ++I I    G   EA+ +F EM +AG EPN      LI  + K  R  +     + +   
Sbjct: 181 TLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAK 240

Query: 327 GITPD 331
           GI PD
Sbjct: 241 GIFPD 245



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 42/194 (21%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +++TLI +Y   GNF     +++EMK  G +PN +TYN L+D   +  R  +   +
Sbjct: 174 PNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYEL 233

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             EM   G+ P+  TY SLL  +G   +G  +D + ++ E+++KG+ L+V          
Sbjct: 234 RDEMRAKGIFPDIYTYTSLL--HGECIFGKLDDAVELFNEVRQKGLPLNVV--------- 282

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                                      T++++I+  S  G+  EA  +++EM EAG  P+
Sbjct: 283 ---------------------------TYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPD 315

Query: 297 LFVLTSLIQCYGKA 310
             V TSL+    KA
Sbjct: 316 DRVYTSLVSSLHKA 329



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 82/174 (47%), Gaps = 1/174 (0%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  G + +  +V+ +++EM + G+  + + Y  ++    +    +   +++ E+
Sbjct: 3   TYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDEL 62

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+  +V  Y  L+      G   EA EI  +   +     +   ++++I     RG 
Sbjct: 63  TEKGLVANVHTYGALIDGVCKAGEM-EAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGL 121

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + EA  +   M + GFE +++ L ++     K  + ++  R L  + E G+ P+
Sbjct: 122 IDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPN 175



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 56/108 (51%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G ++ A+ L D  R +    D   +++L+      G  D  + ++ E++  G+  N+
Sbjct: 222 SKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNV 281

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           +TY  ++  + +  R  +   +Y EMT+ GL+P+   Y SL+ +  +A
Sbjct: 282 VTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHKA 329


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 123/263 (46%), Gaps = 2/263 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+ +    +++  + + +  +  A++ +I      G     L +++EMK  G+ P   +Y
Sbjct: 349 GDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSY 408

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N+L+    +A R      ++K M  +G  PN  T+   +  YG++      +  Y  MK 
Sbjct: 409 NSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 468

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG+   V   N +L   A  G    A  +F ++K+     PD+ T++ MI  CS   K  
Sbjct: 469 KGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM-GVSPDTITYTMMIKCCSKASKFD 527

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA  +F +M+E    P++  + SLI    KA R D+  R   +L E+ + P D     LL
Sbjct: 528 EAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLL 587

Query: 340 NVMTQTPK-EELGKLVECVEKSN 361
             + +  K +E+  L+E +  SN
Sbjct: 588 AGLGREGKVKEVMHLLEEMYHSN 610



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 3/213 (1%)

Query: 121 PNAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN ++ +  I  YG +G     +  YE MK+ G+ P+++  N +L  + ++ R    K +
Sbjct: 438 PNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRV 497

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E+   G+SP+  TY  +++   +A   ++ + ++ +M E      V   N+L+     
Sbjct: 498 FHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYK 557

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEA+ IF  +K   N +P   T+++++      GKV E   +  EM  + + PNL 
Sbjct: 558 AGRGDEAWRIFYQLKEM-NLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 616

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +++ C  K    +D +  L  +   G  PD
Sbjct: 617 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD 649



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PN +S    I++ G A  FD    +  +M+  G KP++IT+  L+  +  A R 
Sbjct: 257 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 316

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
              K ++ +M  +   P+  TY +LL  +G     +  + ++  MK  G   +V  Y  +
Sbjct: 317 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 376

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +     VG   EA E+F++MK  +   P+ ++++S+I+      +  +A  +F  M   G
Sbjct: 377 IDALCQVGRVFEALEMFDEMK-QKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHG 435

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +PN +     I  YGK+  +   ++    +   GI PD
Sbjct: 436 PKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 474



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 9/231 (3%)

Query: 109 YDRARNEKWRI--------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           +DR   E +R+            +S L+  +G   + +  L +  EM+A GVKPN+ +Y 
Sbjct: 210 FDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYT 269

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
             +  +G+AKR  +   I  +M + G  P+  T+  L++    A    D   V+ +MK+ 
Sbjct: 270 ICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKS 329

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
             +     Y TLL    D G +    EI+  MK ++    +   ++++I      G+V E
Sbjct: 330 DQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMK-ADGYNDNVVAYTAVIDALCQVGRVFE 388

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A  MF+EM + G  P  +   SLI  + KA R  D +     +   G  P+
Sbjct: 389 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPN 439



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 118/251 (47%), Gaps = 6/251 (2%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D  + +  + +   F+ +    G  G           MK  G+  N  TYN L+  + 
Sbjct: 147 VFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLV 206

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           ++    +   +Y+ M  +G+ P+  TY+ L+ A+G+ R  E  L + REM+  G++ +V 
Sbjct: 207 KSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVY 266

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y   + +       DEA+ I   M+ +E C+PD  T + +I +    G++S+A+ +F +
Sbjct: 267 SYTICIRVLGQAKRFDEAYRILAKME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 325

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           M ++  +P+     +L+  +G    +  V+   N +   G   +      +++ + Q   
Sbjct: 326 MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQ--- 382

Query: 348 EELGKLVECVE 358
             +G++ E +E
Sbjct: 383 --VGRVFEALE 391



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 6/216 (2%)

Query: 119 IDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P+  +    L+G A  G       V+ E+KA+GV P+ ITY  ++    +A +  +  
Sbjct: 471 IVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAV 530

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I+ +M +N   P+     SL+    +A  G++   ++ ++KE  ++ +   YNTLLA  
Sbjct: 531 KIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGL 590

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEP 295
              G   E   + E+M  S N  P+  T+++++  C C+ G V++A  M   M   G  P
Sbjct: 591 GREGKVKEVMHLLEEMYHS-NYPPNLITYNTILD-CLCKNGAVNDALDMLYSMTTKGCIP 648

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +L    ++I    K +R ++      ++ ++ + PD
Sbjct: 649 DLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 683



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 113/268 (42%), Gaps = 34/268 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   + A+ +  +  NE  + D    + LI++   AG      +V+ +MK    KP+ +
Sbjct: 277 QAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRV 336

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD  G       V  I+  M  +G + N   Y +++ A  +     + L ++ EM
Sbjct: 337 TYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEM 396

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM--------------------KSSEN 257
           K+KG+      YN+L++         +A E+F+ M                    KS E+
Sbjct: 397 KQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGES 456

Query: 258 CQ--------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            +              PD    ++++   +  G++  A+ +F+E+   G  P+    T +
Sbjct: 457 IKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMM 516

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I+C  KA + D+ V+    + E    PD
Sbjct: 517 IKCCSKASKFDEAVKIFYDMIENNCVPD 544



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           ++ K+ GV      YN+L+  +         + ++ EM + G  P+  TY  LL A G++
Sbjct: 779 KKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKS 838

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
              E+ L V  EM  KG + +   YNT+++        ++A +++ ++ S +   P   T
Sbjct: 839 MRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMS-QGFSPTPCT 897

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           +  ++      G++ +AE +FNEMLE G + N  +   L+  +  A  T+ V      + 
Sbjct: 898 YGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMV 957

Query: 325 ELGITPD 331
           + GI PD
Sbjct: 958 DQGINPD 964



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +++A GL+   +      D   ++ L+   G +   +  L V EEM   G +   +TYN 
Sbjct: 806 IDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNT 865

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++  + +++R  Q   +Y  +   G SP   TY  LL    +A   ED  +++ EM E G
Sbjct: 866 IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 925

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            + + T+YN LL      G T++   +F+DM   +   PD  +++ +I
Sbjct: 926 CKANCTIYNILLNGHRIAGNTEKVCHLFQDM-VDQGINPDIKSYTIII 972



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A ++LI     AG  D    ++ ++K + ++P   TYN LL  +GR  +  +V  + 
Sbjct: 544 DVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 603

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM  +   PN  TY ++L    +     D L +   M  KG    ++ YNT++      
Sbjct: 604 EEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 663

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE-MLEAGFEPNLF 298
              +EAF IF  MK      PD  T  +++      G + EA  +  +  L+ G + +  
Sbjct: 664 ERYNEAFSIFCQMKKV--LIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRS 721

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF-CGCLLNVMTQTPKEELGKLVE 355
              SL++   K    +  +     +   GIT DD F C  + ++  Q    E  +LV+
Sbjct: 722 SCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVK 779



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 15/193 (7%)

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           ++ K  G+ L   LYN+L+    D    D A  +F +MK    C PD +T++ ++     
Sbjct: 779 KKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKEL-GCGPDEFTYNLLLDAMGK 837

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             ++ E   +  EM   G+E       ++I    K++R +  +     L   G +P    
Sbjct: 838 SMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCT 897

Query: 335 CGCLLNVMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
            G LL+ + +  + E       +++E   K+N     +  +LL    I G+ +K    LF
Sbjct: 898 YGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT---IYNILLNGHRIAGNTEK-VCHLF 953

Query: 390 -----NSISKDVK 397
                  I+ D+K
Sbjct: 954 QDMVDQGINPDIK 966



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 48/102 (47%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++  +E A  LY    ++ +   P  +  L+     AG  +   N++ EM   G K N 
Sbjct: 871 VKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANC 930

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
             YN LL+    A    +V  ++++M D G++P+  +Y  ++
Sbjct: 931 TIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 972


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 114/228 (50%), Gaps = 2/228 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+T+I  Y   G  D  L +   M+ +G++ ++ TYN L   + R  R    K +   MT
Sbjct: 311 FNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMT 370

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +NG+  N+ +Y +L+  + +     +   ++R+M+ KG + SV  YN ++      G   
Sbjct: 371 ENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIR 430

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA E F+     +   PD +T+++++      GKV  A  +F EM + G +PN+   T+L
Sbjct: 431 EA-ERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTAL 489

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEEL 350
           I    K  R+++  +  + +   G+TPDD     L+  + T   K+E+
Sbjct: 490 ISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTDKRKDEI 537



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 14/281 (4%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           I P + S ++  +  AG  D    + +EM   GVK N   YN LLDT  R K   +V  +
Sbjct: 131 ITPLSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEV 190

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            KEM   G+ P   TY  L+     A       SV+ E+K K +   V  Y+ ++     
Sbjct: 191 LKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCR 250

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    A E+F++   +   +P+  T+ ++I      G++  AE +  +M   G   N  
Sbjct: 251 AGNVRRASEVFDECVGN-GIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQI 309

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-----DRFCG-CLLNVMTQTPKEELGK 352
           +  ++I  Y +    D  +     +  +GI  D        CG C +N M     E+  K
Sbjct: 310 IFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRM-----EDAKK 364

Query: 353 LVECVEKSNSKLGYV-VKLLLEEQDIEGDFKKEATELFNSI 392
           L+  + ++  +  YV    L+     EGD   EA  LF  +
Sbjct: 365 LLHIMTENGVESNYVSYTTLISIHSKEGDM-VEARRLFRDM 404



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 105/233 (45%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG++     ++D  + +    D   +S +I  Y  AGN      V++E    G++PN  T
Sbjct: 216 AGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERT 275

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L++   +  +    + +  +M   G+  N   + +++  Y R    +  L +   M+
Sbjct: 276 YGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVME 335

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G+QL V  YNTL      V   ++A ++   M +    + +  +++++I+I S  G +
Sbjct: 336 RMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIM-TENGVESNYVSYTTLISIHSKEGDM 394

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EA  +F +M   G  P++     +I  Y K+    +  R    + + G+ PD
Sbjct: 395 VEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPD 447



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 103/231 (44%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A  L D       +++   ++ L+  Y    N      V +EM++ GV+P + 
Sbjct: 145 KAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVG 204

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D +  A    +V++++ E+    ++ +   Y++++ AY RA        V+ E 
Sbjct: 205 TYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDEC 264

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++ +   Y  L+     +G  + A  +  DM+       +   F++MI      G 
Sbjct: 265 VGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQ-LRGVGHNQIIFNTMIDGYCRHGM 323

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           V +A  +   M   G + +++   +L     +  R +D  + L+ + E G+
Sbjct: 324 VDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGV 374



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L+  +   G  D  L ++EEMK  G KPN++ Y  L+  + +  R  +    Y
Sbjct: 447 DVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFY 506

Query: 180 KEMTDNGLSPNWNTYASLL 198
             M   GL+P+   Y+ L+
Sbjct: 507 DNMLAAGLTPDDTLYSMLV 525


>gi|222626074|gb|EEE60206.1| hypothetical protein OsJ_13175 [Oryza sativa Japonica Group]
          Length = 789

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 179/402 (44%), Gaps = 12/402 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ L +++G  G F   + ++++M    V+P++ T  N++   GR       + + 
Sbjct: 190 DTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVL 249

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +T  G+ P    Y  L+ A G A   E+    +  M E G   ++  YN L    A  
Sbjct: 250 DYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKG 309

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLF 298
           G   EA  IF  M ++   Q D  +F ++I    C+G ++ +A   + EM ++ F P+  
Sbjct: 310 GLFQEAEAIFSRMTNNAAIQKDKDSFDALIE-AYCQGAQLDDAVKAYMEMRKSRFNPDER 368

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 357
            L  ++  Y  A   D+       L  +   P       +L++  +  +  +   L+E +
Sbjct: 369 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 428

Query: 358 E--KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNL 413
           +  +++S    +  ++  E D + +++     L NS  +  D    + N L+D+      
Sbjct: 429 KTNRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQ 488

Query: 414 LENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEE 473
              A ++L+  L   ++ ++   +   WS  +  +S+G +L A+ +W+N L   L+  E+
Sbjct: 489 KGRAARVLDQALKYGLFPELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDED 548

Query: 474 FPPLLGINTGHGKHKYS--DKGL--ASVFESHLKE-LNAPFH 510
            P L  +    G+ + S   +GL  A V  S L + L++ FH
Sbjct: 549 LPQLASVVVLRGQMEKSTVTRGLPIAKVVYSFLNDTLSSSFH 590



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 103/231 (44%), Gaps = 5/231 (2%)

Query: 103 EMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           +M  GL+   R++     R D   ++TL+         D    +   M   GV P+  +Y
Sbjct: 31  DMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASY 90

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +++D    A    +V  ++ EM+  G +P+ + Y  L+ A+       + ++V R+M+ 
Sbjct: 91  RHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQA 150

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   +   Y  LL +    G  D   E+F +M+++    PD+ T++ +  +    G   
Sbjct: 151 DGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT--VPPDTATYNVLFRVFGDGGFFK 208

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           E   +F +ML +  EP++    +++   G+    +D    L+ +   G+ P
Sbjct: 209 EVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMVP 259



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 9/202 (4%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPW----QVKTIYKEMTDN---GLSPNWNTYASLLR 199
           MKA GV P   TYN +L    RA  P      +  ++ EM  +    + P+  TY +LL 
Sbjct: 1   MKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLA 60

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
           A       + +  + R M E G+      Y  ++   A  G      E+F +M ++ +  
Sbjct: 61  AAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHT- 119

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           PD   +  ++   +  G  +EA A+  +M   G  P       L+  YG+  R D  VR 
Sbjct: 120 PDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDG-VRE 178

Query: 320 LNRLPELGITPDDRFCGCLLNV 341
           L R     + PD      L  V
Sbjct: 179 LFREMRTTVPPDTATYNVLFRV 200



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 4/193 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  E A  + D    E       A++ L++  G A  ++     +  M  IG  P + 
Sbjct: 238 RGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIE 297

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN L +   +     + + I+  MT+N  +  + +++ +L+ AY +    +D +  Y E
Sbjct: 298 TYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYME 357

Query: 217 MKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           M++        +L   L A C   G  DE+ E FE+++S     P    +  M+++ +  
Sbjct: 358 MRKSRFNPDERSLEGVLNAYCI-AGVIDESKEQFEELQSMVTV-PSIIAYCMMLSLYARN 415

Query: 276 GKVSEAEAMFNEM 288
            + ++A  +  EM
Sbjct: 416 DRWTDAYDLLEEM 428


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R  N+++AF ++DR   +    DPN+  +STLI    + G  +  +++ EEM   G++P 
Sbjct: 249 RNHNLDLAFAMFDRMVKDG--CDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPT 306

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY   L ++  A    +   +  +M   G  PN  T+ +L+    R    E  + +Y 
Sbjct: 307 VYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYH 366

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+  +   YN L+      G  + AF IF+ M  S    P + T++ +I      
Sbjct: 367 KMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWML-SHGSLPSTQTYNEIIKCFCLM 425

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G + +A  +F++ML+AG  PN+    +LI  Y K    ++ +R L  +   G+ PD
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPD 481



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 3/227 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+ LI      G F+  + +Y +M A G+ P  +TYN L++ +    R     TI
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +K M  +G  P+  TY  +++ +      +  + ++ +M + G   +V  YNTL+     
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCK 459

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  + A  + E MK +   +PD+WT++ +I+  S  GK+  A ++F  M+E G  PN  
Sbjct: 460 QGNLNNAMRLLEIMKGN-GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHV 518

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
             T++I  Y    + DD +    ++ E G  P  +    +++  ++T
Sbjct: 519 TYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKT 565



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+++ A  ++D+        +   ++TLI  Y   GN +  + + E MK  G+KP+  TY
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY 485

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+    R  +     +++  M ++G+SPN  TY +++  Y      +D L+++ +M E
Sbjct: 486 TELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVE 545

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   S   YN +++  +      EA E F      +   P+  T++S I      G+  
Sbjct: 546 SGNLPSSQTYNVMISGFSKTNSISEA-ENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTG 604

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD--VVRALNRLPELGITPD 331
            A  +F+EM +  + PNL+  +SLI    +  R +D  +   L RL   G  P+
Sbjct: 605 LAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 1/203 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V++A  +Y +  N   R     F+T+I +    G       +   +      PN  TY +
Sbjct: 183 VDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTS 242

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+    R         ++  M  +G  PN  TY++L+         E+ + +  EM +KG
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG 302

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +V  Y   L    D G + EA E+   MK    C P+  TF+++I+  S  GK   A
Sbjct: 303 IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMK-KRGCVPNIQTFTALISGLSRDGKFEIA 361

Query: 282 EAMFNEMLEAGFEPNLFVLTSLI 304
             ++++ML  G  P      +LI
Sbjct: 362 IGLYHKMLADGLVPTTVTYNALI 384



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 113/248 (45%), Gaps = 11/248 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+  A  L +  +    + D   ++ LI  +   G  +   +++  M   G+ PN +
Sbjct: 459 KQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHV 518

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D      +      ++ +M ++G  P+  TY  ++  + +     +  +   +M
Sbjct: 519 TYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKM 578

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G+  +V  Y + +      G T  AF+IF +M+   N  P+ +T+SS+I      G+
Sbjct: 579 VKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME-KRNYFPNLYTYSSLIYGLCQEGR 637

Query: 278 VSEAEAMFN---EMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPD 331
             +AE M+N    +   G EPN+   T+L++     G+    D +V ++ +    G+ P 
Sbjct: 638 AEDAE-MYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK---KGLQPS 693

Query: 332 DRFCGCLL 339
           +     LL
Sbjct: 694 EEIYRALL 701



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 36/229 (15%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +F+TL+   G     D   ++Y +M   G++P+++T+N +++ + +  R  + K I   +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                 PN  TY SL+  + R                                       
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHN-----------------------------------L 253

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D AF +F+ M   + C P+S T+S++I      G++ EA  M  EM++ G EP ++  T 
Sbjct: 254 DLAFAMFDRM-VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
            +     A  + + V  L ++ + G  P+ +    L++ +++  K E+ 
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIA 361



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 11/187 (5%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           ++ EM+     PN+ TY++L+  +   GRA+   ++  +   +T  G  PN +TY +L++
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-EMYNLLARLTHYGCEPNVDTYTTLVK 667

Query: 200 AY-GRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSE 256
              G  R Y  D L V   M++KG+Q S  +Y  LL   C ++   + A  IF  M  + 
Sbjct: 668 GLCGEGRCYEADQLVV--SMQKKGLQPSEEIYRALLIGECKNLK-VESALNIFYSM-DTL 723

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             Q     + ++I        + EA+ +F  MLE  +  +  V T L+    K   TD  
Sbjct: 724 GFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLC 783

Query: 317 VRALNRL 323
           ++ L+ +
Sbjct: 784 LKLLHVM 790



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 2/157 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC--LNVYEEMKAIGVKPN 155
           R G   +AF ++       +  +   +S+LI      G  +     N+   +   G +PN
Sbjct: 599 RNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY  L+  +    R ++   +   M   GL P+   Y +LL    +    E  L+++ 
Sbjct: 659 VDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFY 718

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            M   G QL ++ Y  L+       + +EA  IF+ M
Sbjct: 719 SMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTM 755


>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 426

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIYLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKKSGFMPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVEID 288



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G  P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   DRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKKS-GFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQ 161



 Score = 45.8 bits (107), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++G  G  D    +++++++ GV+ + + Y  ++    RA      K
Sbjct: 250 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAK 309

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +    +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 310 RLLHELKRPDNIPR-DIAIHILAGAGRI---EEATWVFRQAIDAGEVKDITVFERMIYLF 365

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+F+ M+      PDS   + +  + +  GK+ E   A  ++ EM E G
Sbjct: 366 SKYKKYGNVVEVFDKMRGL-GYFPDS---NVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 1/250 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A  L +   +E    D  +++TLI  +              +M   GV+PN  
Sbjct: 263 RKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEF 322

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN +++   +A        I ++    G  P+  TY+SL+            ++V+ E 
Sbjct: 323 TYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEA 382

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG + S+ LYNTL+   +  G   +A ++ +DM     C PD WT++ ++      G 
Sbjct: 383 MEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDM-MEHGCSPDIWTYNLVVNGLCKMGC 441

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +S+A  + N+ +  G  P++F   +LI  Y K +  D  +  L+ +   GITPD      
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNT 501

Query: 338 LLNVMTQTPK 347
           LLN + +  K
Sbjct: 502 LLNGLCKARK 511



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 118/250 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A G+ + A  +    D   F+TLI  Y    N D  + + + M + G+ P++I
Sbjct: 438 KMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVI 497

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL+ + +A++   V   +K M + G +PN  TY  L+ ++ + R   + + +++EM
Sbjct: 498 TYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEM 557

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K +G+   +    TL+      G  D+A+E+F  ++        +  F+ MI     +  
Sbjct: 558 KTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLN 617

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           VS AE +F++M  +   P+ +    +I  Y K    D     L      G+ P    CG 
Sbjct: 618 VSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGK 677

Query: 338 LLNVMTQTPK 347
           +LN +  T +
Sbjct: 678 VLNCLCVTHR 687



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L +  +N   ++    +  +++ YG  G     +NV+E M     +P++ +YN +++ + 
Sbjct: 63  LAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILV 122

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
                 Q   +Y  M D G+ P+  T+   ++++         L +   M  +G + +  
Sbjct: 123 EYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAV 182

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  +++         EA+ +F++M     C PD  TF+ +I +   +G V E+E +F++
Sbjct: 183 SYCAVISGFYKENCQIEAYHLFDEMLKQGIC-PDILTFNKLIHVLCKKGNVQESEKLFSK 241

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +++ G  PNLF     IQ   +    D+  R L  +   G+TPD
Sbjct: 242 VMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPD 285



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L+D    +    D   F+ LI +    GN      ++ ++   GV PN+ T+N  + 
Sbjct: 200 AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQ 259

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + R     +   + + +   GL+P+  +Y +L+  + +     +      +M   G++ 
Sbjct: 260 GLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEP 319

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   YNT++      G    A +I  D    +   PD +T+SS+I      G ++ A A+
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRD-AMFKGFIPDEFTYSSLINGLCNDGDMNRAMAV 378

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           F E +E GF+ ++ +  +L++   K       ++ +  + E G +PD
Sbjct: 379 FYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 2/182 (1%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-NTYASLLRAYGRARYGED 209
           G K  + TY  +++ +G   +   ++ +  EM  N  S      Y  ++R YGR    ++
Sbjct: 35  GFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQE 94

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            ++V+  M     + SV  YN ++ +  + GY  +A +++  MK      PD +T +  +
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDI-GIYPDVYTHTIRM 153

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G+ + A  + N M   G E N     ++I  + K     +     + + + GI 
Sbjct: 154 KSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGIC 213

Query: 330 PD 331
           PD
Sbjct: 214 PD 215


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 119/236 (50%), Gaps = 4/236 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           AG    A  L+   + EK R++P+   ++TLI    ++GN +G   +  EM+   +  N+
Sbjct: 58  AGEFGKALDLFQSMKREK-RVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANV 116

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY++++ ++ +  +P +   + +EM   G +P+   +  +++ + R+   E    VY+ 
Sbjct: 117 FTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQH 176

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK-SSENCQPDSWTFSSMITICSCR 275
           M E G +     Y+ L+   A +G  DE+ +I  +M   +    P+  TFS++I      
Sbjct: 177 MVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRT 236

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G++ +A  +F  MLEAG +PN +  T+LI    +A++         ++ +  I PD
Sbjct: 237 GELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPD 292



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 2/251 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--KAIGVKP 154
            R+ N+E A  +Y       ++ D  ++  LI      G  D  L +  EM  +A G  P
Sbjct: 162 ARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVP 221

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N+IT++ L+  + R     +   ++  M + G  PN  TY +L+    RA        ++
Sbjct: 222 NVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELF 281

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M +  +      YN+L+A     G  DEA +++ +M      QP   TF+++I     
Sbjct: 282 EKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCK 341

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            GK+  A  +  EM   G   +      LI    +A + D+ +    ++ E     D   
Sbjct: 342 LGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVS 401

Query: 335 CGCLLNVMTQT 345
           C   +  + +T
Sbjct: 402 CVSFVGGLCKT 412



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 111/229 (48%), Gaps = 9/229 (3%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           K  I  +A+  +++    AG     L V+E MK+    P+++TYN L+++   A    + 
Sbjct: 5   KCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKA 64

Query: 176 KTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
             +++ M  +  + P+  TY +L+     +   E    +  EM++K +  +V  Y++++ 
Sbjct: 65  LDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIK 124

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                   +E++++ E+M ++  C PD + F+ ++   +    + +A  ++  M+E+G++
Sbjct: 125 SLVKEAKPEESYKVLEEMMAA-GCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYK 183

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           P+      LI    K  + D+ ++ L+ +         R  G + NV+T
Sbjct: 184 PDNVSYHILIHGLAKIGKLDESLKILSEMAM-------RAAGYVPNVIT 225



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 2/189 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-IGVKPNM 156
           RA  V  A  L+++        D  A+++LI  Y   G+ D    +Y EM    G++P +
Sbjct: 270 RAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTI 329

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+N L+D   +  +  +   +  EM   GL+ +  TY  L+    RA   ++ L VY++
Sbjct: 330 VTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQ 389

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+EK   L      + +      G  D+A+ +FE  + S    P+  TF  +       G
Sbjct: 390 MREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKS-GAVPNPETFRILSESLIKLG 448

Query: 277 KVSEAEAMF 285
           +V +A+ + 
Sbjct: 449 RVEDAQKLM 457



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 39/233 (16%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   FSTLI      G  +  L V+  M   G KPN  TY  L+  + RA++  Q + +
Sbjct: 221 PNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQAREL 280

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-KGMQLSVTLYNTLL---- 233
           +++MT   + P+   Y SL+  Y +    ++   +YREM    G+Q ++  +NTL+    
Sbjct: 281 FEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFC 340

Query: 234 ---------AMCADVGYT----------------------DEAFEIFEDMKSSENCQPDS 262
                     + A++G                        DEA E+++ M+  +      
Sbjct: 341 KLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPV 400

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
              S +  +C   G + +A A+F    ++G  PN      L +   K  R +D
Sbjct: 401 SCVSFVGGLCK-TGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVED 452


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 171/390 (43%), Gaps = 45/390 (11%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYD---TRAGNVEMAFGLYDRARNEKWRIDPNAFS 125
           K G + ++Y ++  K    +K+   +     ++AGN + A  L +R  +E    D   +S
Sbjct: 579 KAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYS 638

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
            L+         +  L + ++M   G+K  +  Y  L+D M R  +    K +Y EMT +
Sbjct: 639 VLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSS 698

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G  P+  TY   + +Y +    ED   +  +M+ +G+   V  YN L+  C  +GY D A
Sbjct: 699 GHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRA 758

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-----EAEAMFN------------EM 288
           F   + M  + +C+P+ WT+  ++     +G ++     +   M+N             M
Sbjct: 759 FSTLKRMVGA-SCEPNYWTYCLLLKHL-LKGNLAYVRSVDTSGMWNLIELDITWQLLERM 816

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           ++ G  P +   +SLI  + KA R ++    L+ +   G++P++     L+     T   
Sbjct: 817 VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFF 876

Query: 349 E-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNC 403
           E     +  + EC  +   +     +LL+     EGDF+K            VK  +C+ 
Sbjct: 877 EKALSFVSIMSECGFQPQLE---SYRLLVVGLCNEGDFEK------------VKSLFCD- 920

Query: 404 LIDLCVNLNLLENACKLLELGLTLEVYTDI 433
           L++L  N +  E A K+L  GL    Y DI
Sbjct: 921 LLELGYNHD--EVAWKILNDGLLKAGYVDI 948



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 4/243 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  + ++  + K ++D   F  LI              +  E+ A G+ PN+ITY +++D
Sbjct: 411 ALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIID 470

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              ++ +      + K M  +G  PN  TY SL+    + +     +++  +M++ G+  
Sbjct: 471 GYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIP 530

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  Y TLL    D    D AF +FE M+ +   +PD   + +++T   C  K   AE  
Sbjct: 531 NVITYTTLLQGQCDEHDFDNAFRLFEMMEQN-GLKPDEHAY-AVLTDALC--KAGRAEEA 586

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           ++ ++  G        T+LI  + KA  TD     + R+ + G TPD      LL+ + +
Sbjct: 587 YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCK 646

Query: 345 TPK 347
             +
Sbjct: 647 QKR 649



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 47/257 (18%)

Query: 104 MAFGLYDRARNEKWRIDPNA-----------FSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           + +GL D+   E   +  NA           F+ LI  Y  A  FD  L +  +M +   
Sbjct: 364 LIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKC 423

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           K ++  +  L++++ +  R  + K +  E++ NGL PN  TY S++  Y ++        
Sbjct: 424 KLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKS-------- 475

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
                                      G  D A E+ + M   + CQP++WT++S++   
Sbjct: 476 ---------------------------GKVDIALEVLK-MMERDGCQPNAWTYNSLMYGL 507

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
               K+ +A A+  +M + G  PN+   T+L+Q        D+  R    + + G+ PD+
Sbjct: 508 VKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDE 567

Query: 333 RFCGCLLNVMTQTPKEE 349
                L + + +  + E
Sbjct: 568 HAYAVLTDALCKAGRAE 584



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 1/190 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           VY ++   G+ P+ +TYN ++ +  +          ++ + + GL P   T  +L+  Y 
Sbjct: 170 VYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYC 229

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           R         ++  M   G Q +   Y  L+    +     EA  +F  MK  + C P+ 
Sbjct: 230 RTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKR-DGCSPNV 288

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             F+ +I+     G+V +A  +F+ M + G  P++    ++I  Y K  R +D ++    
Sbjct: 289 RAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL 348

Query: 323 LPELGITPDD 332
           + + G  PDD
Sbjct: 349 MEKNGCHPDD 358



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 10/216 (4%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL---DTMGRAKRPWQV 175
           PN  AF+ LI     +G       +++ M   GV P+++TYN ++     +GR     ++
Sbjct: 286 PNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKI 345

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           K +   M  NG  P+  TY +L+      +  E    +   +KE      VT  N +   
Sbjct: 346 KEL---MEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGY 402

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           C    + D+A  +   M SS+ C+ D   F  +I     + ++ EA+ + NE+   G  P
Sbjct: 403 CMAEKF-DDALRMKNKMMSSK-CKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVP 460

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           N+   TS+I  Y K+ + D  +  L  +   G  P+
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPN 496


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V  A   +D   +  +  D  A++ L+      G  D  + +++++ A G  P+ +
Sbjct: 196 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTV 255

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN++L  + R     + + ++K+M  +G +PN  TY+ +L  + RA+  +D   V  EM
Sbjct: 256 TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEM 315

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G    V  YN LL         D+A E+F  M  +  C PD  ++S ++       K
Sbjct: 316 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDN-GCAPDIVSYSVVLNGLCKTNK 374

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V +A  +F+ M+E    P++     L+    KA + D+    L+++   G  PD
Sbjct: 375 VHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPD 428



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 121/236 (51%), Gaps = 4/236 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +   + L+++  +     D   ++ LI  Y   G  D    +YEEM ++G++P++ 
Sbjct: 20  KQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIY 79

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYRE 216
           TYN+LL+   +  +  +   ++K M + G  P+  TY++++    +  +  E    ++ +
Sbjct: 80  TYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHK 139

Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           M E+G   +   YN L+  +C D    + A+++ E+M +S+   PD+ T++++++     
Sbjct: 140 MIERGCSANTVAYNALINGLCKDEN-IERAYKLLEEM-ASKGYVPDNITYNTILSGLCRM 197

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           GKVSEA+  F+ M   G+ P++     L+    K  +TD+ ++    +   G  PD
Sbjct: 198 GKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPD 253



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 3/226 (1%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A++ LI       N +    + EEM + G  P+ ITYN +L  + R  +  + K  +  M
Sbjct: 151 AYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSM 210

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G SP+   Y  LL A  +    ++ + +++++  KG       YN++L   A     
Sbjct: 211 PSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM 270

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLT 301
           DEA E+F+ M +S  C P+  T+S +++   CR  KV +A  +  EM + G  P++    
Sbjct: 271 DEAEEMFKKMVAS-GCAPNGATYSIVLS-GHCRAKKVDDAHKVLEEMSKIGAVPDVVTYN 328

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
            L+    K    D      + + + G  PD      +LN + +T K
Sbjct: 329 ILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNK 374



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 4/181 (2%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN  T+  +L +  +  +      ++++M DNG+SP+   Y  L+  Y +    ++   +
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 214 YREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           Y EM   G++ S+  YN+LL A C +     EA E+F+ M + +  +PD  T+S++I+  
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETK-MKEAMELFKTM-AEKGFEPDVVTYSTIISGL 123

Query: 273 SCRGKVSEA-EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              GKV+EA E +F++M+E G   N     +LI    K +  +   + L  +   G  PD
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPD 183

Query: 332 D 332
           +
Sbjct: 184 N 184



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 3/180 (1%)

Query: 121 PNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +  I L G   A   D    V EEM  IG  P+++TYN LLD + +     +   +
Sbjct: 287 PNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHEL 346

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M DNG +P+  +Y+ +L    +     D   ++  M E+ +   V  +N L+     
Sbjct: 347 FSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCK 406

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEA ++ + M  S  C PD   +++++     +G+  +A+ +   M E GF  + F
Sbjct: 407 AGKLDEAKDLLDQMTCS-GCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 465



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 5/181 (2%)

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           SPN  T+  +L+++ +     D   ++ +M + G+      YN L+   A  G  DEA  
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           ++E+M S    +P  +T++S++       K+ EA  +F  M E GFEP++   +++I   
Sbjct: 65  LYEEMVSV-GLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 308 GKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY 366
            K  +  + +  L +++ E G + +      L+N + +   E + +  + +E+  SK GY
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCK--DENIERAYKLLEEMASK-GY 180

Query: 367 V 367
           V
Sbjct: 181 V 181



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           C P+ +TF  ++     +GK+ +   +F +ML+ G  P+      LI  Y K  R D+  
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           R    +  +G+ P       LLN   +  K
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETK 93


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 5/224 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  L+ + R     ++   ++ LI     AG  D  + + +EM   GV  N++
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV 364

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D + + ++  + + + + M   G+  N   Y +L+  +   +  E  L +  EM
Sbjct: 365 TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEM 424

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K KG++L ++LY  L+    +V   DEA  +   M  S   +P+   +++M+  C   GK
Sbjct: 425 KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES-GLEPNYIIYTTMMDACFKSGK 483

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG----KAQRTDDVV 317
           V EA AM  ++L++GF+PN   L   +Q +     K    D VV
Sbjct: 484 VPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVV 527



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 22/284 (7%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCL--NVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           AR  + R+ PN  +    L   A +  G L   ++E++ A    PN+ T+N ++D + + 
Sbjct: 146 ARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKE 201

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               + ++++  M + G  P+  T+ SL+  YG+    ++   +  EM+  G +  V  Y
Sbjct: 202 GELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTY 261

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N L+      G  + A+  F  MK  E    +  TFS+ +      G V EA  +F +M 
Sbjct: 262 NALINCFCKFGRMETAYGYFAAMK-REGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMR 320

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--- 346
             G   N F  T LI    KA R DD +  L+ +   G+          LNV+T T    
Sbjct: 321 VRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVP---------LNVVTYTVLVD 371

Query: 347 ---KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 387
              KE      E V +   K G     LL    I G F  + +E
Sbjct: 372 GLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSE 415



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 127/273 (46%), Gaps = 4/273 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  L+ R +      D   F++LI  YG  G  D    + EEM+  G K +++
Sbjct: 200 KEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVV 259

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   +  R       +  M   G+  N  T+++ + A+ +     + + ++ +M
Sbjct: 260 TYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQM 319

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
           + +GM L+   Y  L+      G  D+A  + ++M   +    +  T++ ++  +C  R 
Sbjct: 320 RVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEM-VRQGVPLNVVTYTVLVDGLCKER- 377

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           KV+EAE +   M +AG   N  + T+LI  +   + ++  +  L+ +   G+  D    G
Sbjct: 378 KVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYG 437

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 368
            L+  +    K +E   L+  +++S  +  Y++
Sbjct: 438 ALIQGLCNVHKLDEAKSLLTKMDESGLEPNYII 470



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 7/240 (2%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+   +I      G      +++  MK +G  P+++T+N+L+D  G+     +V+ +
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA 237
            +EM  +G   +  TY +L+  + +    E     +  MK +G+  +V  ++T + A C 
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           + G   EA ++F  M+       + +T++ +I      G++ +A  + +EM+  G   N+
Sbjct: 306 E-GLVREAMKLFAQMR-VRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNV 363

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL--NVMTQTPKEELGKLVE 355
              T L+    K ++  +    L  + + G+  ++     L+  + M +  ++ LG L E
Sbjct: 364 VTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE 423



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 23/192 (11%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N E A GL    +N+   +D + +  LI+        D   ++  +M   G++PN I Y 
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 161 NLLDTMGRA-KRPWQVKTIYK---------------------EMTDNGLSPNWNTYASLL 198
            ++D   ++ K P  +  + K                     EM   G+S +   Y +LL
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 532

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             Y +     D  ++  +M + G+QL +  Y   ++   ++    EA E+F +M      
Sbjct: 533 DGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM-IGHGI 591

Query: 259 QPDSWTFSSMIT 270
            PD   ++ +IT
Sbjct: 592 APDRAVYNCLIT 603


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 120/232 (51%), Gaps = 13/232 (5%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K R +P+   ++ L++ +  AG       V++EMK  G++PN+ TY+ ++D + R  +  
Sbjct: 248 KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQIS 307

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++ +M D+G +PN  T+ +L+R + +A   E  L VY +MK+ G +     YN L+
Sbjct: 308 RAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLI 367

Query: 234 -AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            A C D    + A ++   M   + C+ ++ TF+++      +  V+ A  M+++M+EA 
Sbjct: 368 EAHCRDENL-ENAVKVLNTM-IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAK 425

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 336
            EPN      L++ +  ++ TD V++    + +  + P+          FCG
Sbjct: 426 CEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCG 477



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +AF  +  +R++     P+ ++ +I L G    FD   ++ + MK+  V+ ++ T+  L+
Sbjct: 134 LAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILI 193

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
               RA    +    +  M D G  P+   ++ ++    R R   +  S +  +K++  +
Sbjct: 194 RRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDR-FE 252

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAE 282
             V +Y  L+      G   EA ++F++MK +   +P+ +T+S +I  +C C G++S A 
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKEMKLA-GIEPNVYTYSIVIDALCRC-GQISRAH 310

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +F +ML++G  PN     +L++ + KA RT+ V++  N++ +LG  PD
Sbjct: 311 DVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPD 359



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 39/211 (18%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL---------------- 162
           PNA  F+ L++++  AG  +  L VY +MK +G +P+ ITYN L                
Sbjct: 323 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKV 382

Query: 163 LDTMGRAKRPWQVKT-------------------IYKEMTDNGLSPNWNTYASLLRAYGR 203
           L+TM + K      T                   +Y +M +    PN  TY  L+R +  
Sbjct: 383 LNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVG 442

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           ++  +  L + +EM +K ++ +V  Y  L+ M   +G+ + A+++F++M   E C   S 
Sbjct: 443 SKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEM-VEEKCLTPSL 501

Query: 264 TFSSMITICSCR-GKVSEAEAMFNEMLEAGF 293
           +   M+     R G++ + E +  +M++ G 
Sbjct: 502 SLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 8/223 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G +E A  ++D   +    I+PN   + TL+  Y   G  D  L+++ EM   G+KP+ 
Sbjct: 547 VGKMEKALRVFDAMVSAG--IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPST 604

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I YN ++D +  A R    K  + EMT++G++ N  TY  +LR   + R  ++ + +++E
Sbjct: 605 ILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKE 664

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++   +++++   NT++A        +EA ++F  + S     P   T+S MIT     G
Sbjct: 665 LRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASI-SRSGLVPCVVTYSIMITNLIKEG 723

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            V EAE MF+ M  AG EP+  +L  +++   +  + +++VRA
Sbjct: 724 LVEEAEDMFSSMQNAGCEPDSRLLNHVVR---ELLKKNEIVRA 763



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
            Y T+   V+M   L+D    +    D   F+ LIK Y   G  D  + ++ EM+  GVK
Sbjct: 368 GYATKGCLVDMT-DLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 426

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDT 210
           P+++TY  ++  + R  +       + +M D G++P+   Y  L++ +   G     ++ 
Sbjct: 427 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 486

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           +S   E+   GM L +  +++++     +G   +A  IF D+  +    P +  +S ++ 
Sbjct: 487 IS---EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPTAVVYSMLMD 542

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                GK+ +A  +F+ M+ AG EPN  V  +L+  Y K  R D+ +     + + GI P
Sbjct: 543 GYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 144/308 (46%), Gaps = 20/308 (6%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A+ST+I  +   G+ +   ++++EM   G+ P+ +TY++++  + +A+   + +   
Sbjct: 218 DVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M + G+ PN  TY +L+  Y      ++ + V++EM+   +   V   + L+      
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 337

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++F+ M + +   P+ ++++ M+   + +G + +   +F+ ML  G  P+++ 
Sbjct: 338 GKIKEARDVFDTM-AMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYT 396

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
              LI+ Y      D  +   N + + G+ PD      ++  + +     +GK+ + +EK
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR-----IGKMDDAMEK 451

Query: 360 SNSKLG-------YVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLN 412
            N  +        Y    L++     G   K A EL + I  +         +D+    +
Sbjct: 452 FNQMIDQGVAPDKYAYHCLIQGFCTHGSLLK-AKELISEIMNNGMH------LDIVFFSS 504

Query: 413 LLENACKL 420
           ++ N CKL
Sbjct: 505 IINNLCKL 512



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 7/225 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +PN FS  I L G A    GCL    ++++ M   G+ P++ T+N L+          + 
Sbjct: 356 NPNVFSYTIMLNGYATK--GCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKA 413

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             I+ EM D+G+ P+  TY +++ A  R    +D +  + +M ++G+      Y+ L+  
Sbjct: 414 MIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQG 473

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G   +A E+  ++ ++     D   FSS+I      G+V +A+ +F+  +  G  P
Sbjct: 474 FCTHGSLLKAKELISEIMNN-GMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              V + L+  Y    + +  +R  + +   GI P+D   G L+N
Sbjct: 533 TAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVN 577



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 118/274 (43%), Gaps = 15/274 (5%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N    +D   FS++I      G      N+++    +G+ P  + Y+ L+D      +  
Sbjct: 492 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKME 551

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++  M   G+ PN   Y +L+  Y +    ++ LS++REM +KG++ S  LYN ++
Sbjct: 552 KALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 611

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
               + G T  A   F +M  S     +  T++ ++          EA  +F E+     
Sbjct: 612 DGLFEAGRTVPAKVKFHEMTES-GIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNV 670

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEELGK 352
           + N+  L ++I    + +R ++       +   G+ P    C    ++M T   KE L +
Sbjct: 671 KINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP----CVVTYSIMITNLIKEGLVE 726

Query: 353 LVECV---------EKSNSKLGYVVKLLLEEQDI 377
             E +         E  +  L +VV+ LL++ +I
Sbjct: 727 EAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEI 760



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 2/183 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P   TY  L+D   RA RP      + ++   GL  N      LL+ +  A+  ++ L
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 212 SVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMI 269
            +      E G    V  Y+ LL    D G + +A ++   M +    C PD   +S++I
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVI 226

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G V++A  +F EM++ G  P+    +S++    KA+  D     L ++   G+ 
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 286

Query: 330 PDD 332
           P++
Sbjct: 287 PNN 289


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 162/352 (46%), Gaps = 23/352 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A   +D       +     ++T+I      G       ++++M+  G +PN++
Sbjct: 177 KVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVV 236

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+D++ + K   +   I+  M    +SP+  TY SL++     R  ++  ++  EM
Sbjct: 237 TYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM 296

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
               +  ++  +N L+      G   EA  +F+ M +    +PD  T+SS++   S R +
Sbjct: 297 TSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTM-TEMGVEPDVVTYSSLMYGYSLRME 355

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F+ M+  G +P+ F    LI+ Y KA+R D+  +  N +   G+TPD+     
Sbjct: 356 IVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNT 415

Query: 338 LLNVMTQTPKEELGKLVECVE-----KSNSKLG--YVVKLLLEEQDIEGDFKKEATELFN 390
           L++ + Q     LG+L E  +      SN  L   +   +LL+    EG   K A  LF 
Sbjct: 416 LIHGLCQ-----LGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGK-AFRLFR 469

Query: 391 SISKDVKK---AYCNCLIDLCVNLNLLENACKLL-EL---GL--TLEVYTDI 433
            +     K   A  N LID       L++A KL  EL   GL   +++YT I
Sbjct: 470 VMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTI 521



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 9/216 (4%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D    S LI  +      D   +V+ +M  +G++P+ +T+N L++ + +  +  Q    +
Sbjct: 129 DIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFF 188

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLL-AMC 236
            +   +G  P   TY +++   G  + GE T +  ++++M+E G Q +V  YN L+ ++C
Sbjct: 189 DDFEASGCQPTVYTYTTIIN--GLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLC 246

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEP 295
            D    +EA +IF  MK ++   PD +T++S+I  +C+ R +  EA A+ NEM      P
Sbjct: 247 KD-KLVNEALDIFSYMK-AKRISPDIFTYNSLIQGLCNFR-RWKEASALLNEMTSLNIMP 303

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           N+F    L+    K  +  +       + E+G+ PD
Sbjct: 304 NIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPD 339



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 7/238 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A G++          D   +S+L+  Y           +++ M   G KP+  
Sbjct: 317 KEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAF 376

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARYGEDTLSVY 214
           +YN L+    +AKR  + K ++ EM   GL+P   N+NT    L   GR R  +D   ++
Sbjct: 377 SYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQD---LF 433

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           + M   G    +  Y+ LL      GY  +AF +F  M+S+   +PD   ++ +I     
Sbjct: 434 KNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTY-LKPDIAMYNILIDAMCK 492

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            G + +A  +F+E+   G  PN+ + T++I    K    D+ + A   +   G  PD+
Sbjct: 493 FGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDE 550



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 105/224 (46%), Gaps = 3/224 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN F+   L+      G       V++ M  +GV+P+++TY++L+          + +
Sbjct: 301 IMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEAR 360

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++  M   G  P+  +Y  L++ Y +A+  ++   ++ EM  +G+      YNTL+   
Sbjct: 361 KLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGL 420

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             +G   EA ++F++M S+ N  PD +T+S ++      G + +A  +F  M     +P+
Sbjct: 421 CQLGRLREAQDLFKNMHSNGNL-PDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPD 479

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           + +   LI    K     D  +  + L   G+ P+ +    ++N
Sbjct: 480 IAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIIN 523



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 4/215 (1%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
            Y  R   VE A  L+D    +  + D  +++ LIK Y  A   D    ++ EM   G+ 
Sbjct: 349 GYSLRMEIVE-ARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLT 407

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ + YN L+  + +  R  + + ++K M  NG  P+  TY+ LL  + +  Y      +
Sbjct: 408 PDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRL 467

Query: 214 YREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +R M+   ++  + +YN L+ AMC   G   +A ++F ++   +   P+   ++++I   
Sbjct: 468 FRVMQSTYLKPDIAMYNILIDAMCK-FGNLKDARKLFSEL-FVQGLLPNVQIYTTIINNL 525

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
              G + EA   F  M   G  P+ F    +I+ +
Sbjct: 526 CKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGF 560


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 137/304 (45%), Gaps = 8/304 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            R   ++ A GL+     ++WR  P+A  +++LI  +  AG +   +N+ ++M    + P
Sbjct: 166 ARHSQIDQARGLFFEM--QEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPP 223

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  TYNN+++  G A    +   + K+MT NG+ P+  T+  +L A+         ++ +
Sbjct: 224 SRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYF 283

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICS 273
             MK   +       N ++      G   EA E+   M+     C PD  T++S++    
Sbjct: 284 EMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYY 343

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             GKV + +A+F+ M+  G +PN+    +L+  Y       D +     L + G+ PD  
Sbjct: 344 VCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVV 403

Query: 334 FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKL--LLEEQDIEGDFKKEATELFNS 391
               LLN   ++ + E  +      + NS    +V    L++     G F KEA  L + 
Sbjct: 404 SYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMF-KEAISLLHE 462

Query: 392 ISKD 395
           + KD
Sbjct: 463 MEKD 466



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 134/291 (46%), Gaps = 37/291 (12%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           +Y +R  + + A G++   +    R D  +++TL+  YG +G  +     ++EM+    +
Sbjct: 376 AYASRGMHAD-ALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCR 434

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN+++YN L+D  G A    +  ++  EM  +G+ P+  + ++LL A GR R      ++
Sbjct: 435 PNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTI 494

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT--- 270
               K +G++L++  YN+ +    + G   +A E++  M +S N  PD+ T++ +I+   
Sbjct: 495 LEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMAS-NVNPDAVTYNILISGLC 553

Query: 271 ------------------------------ICSC--RGKVSEAEAMFNEMLEAGFEPNLF 298
                                         ICS   +GK++EAE+ F+ M E+G  P++ 
Sbjct: 554 KVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVL 613

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             T++I+ Y       +       +    + PD   C  L+  + +  + E
Sbjct: 614 TYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHE 664



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 109/263 (41%), Gaps = 36/263 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G  E A   +   R    R +  +++ LI  YG+AG F   +++  EM+  G+ P+++
Sbjct: 414 RSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVV 473

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVYRE 216
           + + LL   GR ++  ++ TI +     G+  N   Y S + +Y     YG+  L +Y  
Sbjct: 474 SISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGK-ALELYAV 532

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM------------------------ 252
           M    +      YN L++    VG   E+ + FEDM                        
Sbjct: 533 MMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGK 592

Query: 253 ----------KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                          C PD  T+++MI   +  G    A  +F EM     +P+  + +S
Sbjct: 593 LTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSS 652

Query: 303 LIQCYGKAQRTDDVVRALNRLPE 325
           L++   +  + + V++ +  + E
Sbjct: 653 LMEALNRGSQHERVLQLMELMKE 675



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 83/185 (44%), Gaps = 1/185 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +I+ Y   G++    ++++EM+   V+P+ I  ++L++ + R  +  +V  + 
Sbjct: 611 DVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLM 670

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M +  +  N   Y  ++ +    R  +    +   +      +SV   N LL      
Sbjct: 671 ELMKEKCIPLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLSSISVGTLNHLLTFLGKC 730

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G T+   ++F  M SS +    S T++ ++      GK  +   +   M +AG  P L++
Sbjct: 731 GKTECMMKLFYKMMSSCSTVGVS-TYTVLLRNLLAVGKWRKYIEVLQWMEDAGVSPTLYM 789

Query: 300 LTSLI 304
             +++
Sbjct: 790 YQNVL 794



 Score = 38.9 bits (89), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 45/246 (18%), Positives = 105/246 (42%), Gaps = 11/246 (4%)

Query: 86  RASKLKEKSYDTRAGNVEMAFGLYDRARN-----EKWRIDPNA--FSTLIKLYGTAGNFD 138
           R  KL    Y++  G+  + FG Y +A           ++P+A  ++ LI      G + 
Sbjct: 501 RGIKLNIVCYNSGIGSY-LNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYA 559

Query: 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
             L  +E+M  + +      Y++L+ +  +  +  + ++ +  M ++G  P+  TY +++
Sbjct: 560 ESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMI 619

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
            AY       +   +++EM+   +Q    + ++L+         +   ++ E MK  E C
Sbjct: 620 EAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMK--EKC 677

Query: 259 QP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            P +   +  +I  CS       A  +   +  +    ++  L  L+   GK  +T+ ++
Sbjct: 678 IPLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLSSISVGTLNHLLTFLGKCGKTECMM 737

Query: 318 RALNRL 323
           +   ++
Sbjct: 738 KLFYKM 743


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 123/258 (47%), Gaps = 6/258 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A  L+D    +  + D   ++T+I      G       + ++M+  G +PNM+
Sbjct: 175 KVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMV 234

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+D++ R +   +   I+  M   G+SP+  TY SL++   +    ++  ++  EM
Sbjct: 235 TYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEM 294

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
               +   +  +N L+      G   EA  + + M +    +P+  T+SS++   S    
Sbjct: 295 TSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTM-TEMGVEPNVVTYSSLMYGYSLWTD 353

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V EA  +F+ M+  G +PN+F    LI  Y KA+R D+ ++  N +   G+TP++     
Sbjct: 354 VVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNT 413

Query: 338 LLNVMTQTPKEELGKLVE 355
           L++   Q     LGKL E
Sbjct: 414 LIHGFCQ-----LGKLRE 426



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 102/208 (49%), Gaps = 11/208 (5%)

Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196
           +D  +++ ++M+ +G+ PN+ T +  ++   + +R     ++  ++   GL P   T+ +
Sbjct: 109 YDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTT 168

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L+    +       + ++ +M  KG Q  V  YNT++     +G T  A  + + M+ + 
Sbjct: 169 LINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEA- 227

Query: 257 NCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
            CQP+  T+S++I    CR + V+EA  +F+ M   G  P++F  TSLIQ   K  R  +
Sbjct: 228 GCQPNMVTYSTLID-SLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKE 286

Query: 316 VVRALNRLPELGITPD--------DRFC 335
               LN +  L I PD        D FC
Sbjct: 287 ASALLNEMTSLNIMPDIVTFNVLVDTFC 314



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 113/240 (47%), Gaps = 11/240 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G V  A G+       +  ++PN   +S+L+  Y    +      ++  M   G KPN
Sbjct: 315 KEGKVSEALGVLKTM--TEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPN 372

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLS 212
           + +YN L++   +AKR  +   ++ EM   GL+PN  +Y +L+  +   G+ R  +D   
Sbjct: 373 IFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQD--- 429

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           ++R M   G    +  Y+ LL      GY  +AF +F  M+S+   +P+   ++ ++   
Sbjct: 430 LFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTY-LKPNLVMYTILVHAM 488

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              G   +A  +F+E+   G +P++ + T++I    K    D+ + A   +   G  PD+
Sbjct: 489 CKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDE 548



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 108/218 (49%), Gaps = 9/218 (4%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN +  S  +  +      D   +V  ++  +G++P ++T+  L++ + +     Q  
Sbjct: 124 LSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAV 183

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLL- 233
            ++ +M   G  P+  TY +++   G  + GE   +  + ++M+E G Q ++  Y+TL+ 
Sbjct: 184 ELFDDMVAKGCQPDVYTYNTIIN--GLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLID 241

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
           ++C D    +EA +IF  MK ++   PD +T++S+I       +  EA A+ NEM     
Sbjct: 242 SLCRD-RLVNEALDIFSYMK-AKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNI 299

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            P++     L+  + K  +  + +  L  + E+G+ P+
Sbjct: 300 MPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPN 337



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 1/196 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  ++ A  L++   ++    +  +++TLI  +   G      +++  M   G  P++ 
Sbjct: 385 KAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLF 444

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ LLD   +     +   +++ M    L PN   Y  L+ A  ++   +D   ++ E+
Sbjct: 445 TYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSEL 504

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+Q  V LY T++      G  DEA E F +M+ ++ C PD  +++ +I        
Sbjct: 505 FVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNME-ADGCPPDEISYNVIIRGLLQHKD 563

Query: 278 VSEAEAMFNEMLEAGF 293
            S A  +  EM + GF
Sbjct: 564 ESRALLLVGEMRDRGF 579


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 171/390 (43%), Gaps = 45/390 (11%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYD---TRAGNVEMAFGLYDRARNEKWRIDPNAFS 125
           K G + ++Y ++  K    +K+   +     ++AGN + A  L +R  +E    D   +S
Sbjct: 579 KAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYS 638

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
            L+         +  L + ++M   G+K  +  Y  L+D M R  +    K +Y EMT +
Sbjct: 639 VLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSS 698

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G  P+  TY   + +Y +    ED   +  +M+ +G+   V  YN L+  C  +GY D A
Sbjct: 699 GHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRA 758

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-----EAEAMFN------------EM 288
           F   + M  + +C+P+ WT+  ++     +G ++     +   M+N             M
Sbjct: 759 FSTLKRMVGA-SCEPNYWTYCLLLKHL-LKGNLAYVRSVDTSGMWNLIELDITWQLLERM 816

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           ++ G  P +   +SLI  + KA R ++    L+ +   G++P++     L+     T   
Sbjct: 817 VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFF 876

Query: 349 E-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNC 403
           E     +  + EC  +   +     +LL+     EGDF+K            VK  +C+ 
Sbjct: 877 EKALSFVSIMSECGFQPQLE---SYRLLVVGLCNEGDFEK------------VKSLFCD- 920

Query: 404 LIDLCVNLNLLENACKLLELGLTLEVYTDI 433
           L++L  N +  E A K+L  GL    Y DI
Sbjct: 921 LLELGYNHD--EVAWKILNDGLLKAGYVDI 948



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 4/243 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  + ++  + K ++D   F  LI              +  E+ A G+ PN+ITY +++D
Sbjct: 411 ALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIID 470

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              ++ +      + K M  +G  PN  TY SL+    + +     +++  +M++ G+  
Sbjct: 471 GYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIP 530

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  Y TLL    D    D AF +FE M+ +   +PD   + +++T   C  K   AE  
Sbjct: 531 NVITYTTLLQGQCDEHDFDNAFRLFEMMEQN-GLKPDEHAY-AVLTDALC--KAGRAEEA 586

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           ++ ++  G        T+LI  + KA  TD     + R+ + G TPD      LL+ + +
Sbjct: 587 YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCK 646

Query: 345 TPK 347
             +
Sbjct: 647 QKR 649



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 47/257 (18%)

Query: 104 MAFGLYDRARNEKWRIDPNA-----------FSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           + +GL D+   E   +  NA           F+ LI  Y  A  FD  L +  +M +   
Sbjct: 364 LIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKC 423

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           K ++  +  L++++ +  R  + K +  E++ NGL PN  TY S++  Y ++        
Sbjct: 424 KLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKS-------- 475

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
                                      G  D A E+ + M   + CQP++WT++S++   
Sbjct: 476 ---------------------------GKVDIALEVLK-MMERDGCQPNAWTYNSLMYGL 507

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
               K+ +A A+  +M + G  PN+   T+L+Q        D+  R    + + G+ PD+
Sbjct: 508 VKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDE 567

Query: 333 RFCGCLLNVMTQTPKEE 349
                L + + +  + E
Sbjct: 568 HAYAVLTDALCKAGRAE 584



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 1/190 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           VY ++   G+ P+ +TYN ++ +  +          ++ + + GL P   T  +L+  Y 
Sbjct: 170 VYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYC 229

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           R         ++  M   G Q +   Y  L+    D     +A  +F  MK  + C P+ 
Sbjct: 230 RTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKR-DGCSPNV 288

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             F+ +I+     G+V +A  +F+ M + G  P++    ++I  Y K  R +D ++    
Sbjct: 289 RAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL 348

Query: 323 LPELGITPDD 332
           + + G  PDD
Sbjct: 349 MEKNGCHPDD 358



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 8/236 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  V  A  L+   + +    +  AF+ LI     +G       +++ M   GV P+++T
Sbjct: 266 AKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMT 325

Query: 159 YNNLL---DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           YN ++     +GR     ++K +   M  NG  P+  TY +L+      +  E    +  
Sbjct: 326 YNAMIVGYSKLGRMNDALKIKEL---MEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNN 382

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            +KE      VT  N +   C    + D+A  +   M SS+ C+ D   F  +I     +
Sbjct: 383 AVKEGFTPTVVTFTNLINGYCMAEKF-DDALRMKNKMMSSK-CKLDLQVFGKLINSLIKK 440

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ EA+ + NE+   G  PN+   TS+I  Y K+ + D  +  L  +   G  P+
Sbjct: 441 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPN 496


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 117/227 (51%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+D      +      ++T+IK     G+    L + ++M+  G KP+++ YN ++D
Sbjct: 160 AVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVID 219

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           ++ + +R  +    + EM D G+ PN  TY+S+L  +       +  S++++M  + +  
Sbjct: 220 SLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMP 279

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   +  L+      G   EA  +FE M +    +PD++T+S+++     + ++ EA+ +
Sbjct: 280 NTVTFTILVDGLCKEGMILEARRVFE-MMTENGVEPDAYTYSALMDGYCLQSQMDEAQKL 338

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           F+ M+  GF P++ V   LI  + K++R ++    L+ + +  +TPD
Sbjct: 339 FDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPD 385



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 103/217 (47%), Gaps = 1/217 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F TL+    +       + +++E+  +G  P++ITY  ++  + +         + K+M 
Sbjct: 144 FGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKME 203

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G  P+   Y +++ +  + R   + +  + EM ++G+  +V  Y+++L    ++G  +
Sbjct: 204 EKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLN 263

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +F+ M    N  P++ TF+ ++      G + EA  +F  M E G EP+ +  ++L
Sbjct: 264 EATSLFKQM-IGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSAL 322

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           +  Y    + D+  +  + +   G  P  R    L+N
Sbjct: 323 MDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILIN 359



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 7/228 (3%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN   +S+++  +   G  +   +++++M    V PN +T+  L+D + +     + +
Sbjct: 242 IPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEAR 301

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +++ MT+NG+ P+  TY++L+  Y      ++   ++  M  KG   SV +YN L+   
Sbjct: 302 RVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGH 361

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                 +EA  +  +M    +  PD+ T+S+++      G+   A+ +F EM   G  P+
Sbjct: 362 CKSRRLNEAKTLLSEMYD-RDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPD 420

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
               + L+    K    D+  R L  + E  I P      C+ N++ Q
Sbjct: 421 SITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHI----CIYNILIQ 464



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 108/228 (47%), Gaps = 7/228 (3%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++P+A+  S L+  Y      D    +++ M   G  P++  YN L++   +++R  + K
Sbjct: 312 VEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAK 371

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           T+  EM D  L+P+  TY++L++ + +A   +    +++EM   G+      Y+ LL   
Sbjct: 372 TLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGL 431

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G+ DEAF + + M+ S+  +P    ++ +I      GK+  A  +F+ +   G +P+
Sbjct: 432 CKHGHLDEAFRLLKAMQESK-IEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPS 490

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +   T +I    K   +++      ++   G  P+     C  NV  Q
Sbjct: 491 VVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNS----CTYNVAIQ 534



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 93/187 (49%), Gaps = 3/187 (1%)

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           +M  +G++P  +T+  LL+ +    +      ++ E+   G +P+  TY ++++   +  
Sbjct: 131 KMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIG 190

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
           +  + L + ++M+EKG +  V  YNT++ ++C D    +EA   F +M   +   P+  T
Sbjct: 191 HTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKD-RRANEAMYFFSEM-VDQGIPPNVVT 248

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           +SS++      G+++EA ++F +M+     PN    T L+    K     +  R    + 
Sbjct: 249 YSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMT 308

Query: 325 ELGITPD 331
           E G+ PD
Sbjct: 309 ENGVEPD 315



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+D    + +      ++ LI  +  +   +    +  EM    + P+ +TY+ L+    
Sbjct: 338 LFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFC 397

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +A RP   + ++KEM   GL P+  TY+ LL    +  + ++   + + M+E  ++  + 
Sbjct: 398 QAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHIC 457

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +YN L+    + G  + A E+F ++   +  QP   T++ MI+     G  +EA  MF +
Sbjct: 458 IYNILIQGMCNFGKLEAARELFSNL-FVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRK 516

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M+  G  PN       IQ + +     + VR +  +   G + D
Sbjct: 517 MVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSAD 560



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/226 (18%), Positives = 95/226 (42%), Gaps = 40/226 (17%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN------------------ 185
           + ++  I   P ++ +N LL ++ + K    V ++ K+M  +                  
Sbjct: 57  FNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCH 116

Query: 186 -------------------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
                              GL P   T+ +LL          D + ++ E+ + G   S+
Sbjct: 117 SNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSL 176

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMF 285
             Y T++     +G+T  A ++ + M+  + C+PD   ++++I ++C  R + +EA   F
Sbjct: 177 ITYTTIIKGLCKIGHTTNALQLLKKME-EKGCKPDVVAYNTVIDSLCKDR-RANEAMYFF 234

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +EM++ G  PN+   +S++  +    + ++      ++    + P+
Sbjct: 235 SEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPN 280



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 65/152 (42%), Gaps = 4/152 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ AF L    +  K       ++ LI+     G  +    ++  +   G++P+++
Sbjct: 433 KHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVV 492

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++  + +     +   ++++M  NG  PN  TY   ++ + R     + + +  EM
Sbjct: 493 TYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEM 552

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
             +G     + +  LL    D+   DE    F
Sbjct: 553 VGRGFSADSSTFQMLL----DLESNDEIISRF 580



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 69/174 (39%), Gaps = 1/174 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  ++A  L+    +     D   +S L+      G+ D    + + M+   ++P++ 
Sbjct: 398 QAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHIC 457

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+  M    +    + ++  +   G+ P+  TY  ++    +     +   ++R+M
Sbjct: 458 IYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKM 517

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
              G   +   YN  +      G    A  + E+M        DS TF  ++ +
Sbjct: 518 VVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEM-VGRGFSADSSTFQMLLDL 570


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R  N+++AF ++DR   +    DPN+  +STLI    + G  +  +++ EEM   G++P 
Sbjct: 249 RNHNLDLAFAMFDRMVKDG--CDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPT 306

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY   L ++  A    +   +  +M   G  PN  T+ +L+    R    E  + +Y 
Sbjct: 307 VYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYH 366

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+  +   YN L+      G  + AF IF+ M  S    P + T++ +I      
Sbjct: 367 KMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWML-SHGSLPSTQTYNEIIKCFCLM 425

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G + +A  +F++ML+AG  PN+    +LI  Y K    ++ +R L  +   G+ PD
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPD 481



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 3/227 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+ LI      G F+  + +Y +M A G+ P  +TYN L++ +    R     TI
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +K M  +G  P+  TY  +++ +      +  + ++ +M + G   +V  YNTL+     
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCK 459

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  + A  + E MK +   +PD+WT++ +I+  S  GK+  A ++F  M+E G  PN  
Sbjct: 460 QGNLNNAMRLLEIMKGN-GLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHV 518

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
             T++I  Y    + DD +    ++ E G  P  +    +++  ++T
Sbjct: 519 TYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKT 565



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+++ A  ++D+        +   ++TLI  Y   GN +  + + E MK  G+KP+  TY
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY 485

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+    R  +     +++  M ++G+SPN  TY +++  Y      +D L+++ +M E
Sbjct: 486 TELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVE 545

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   S   YN +++  +      EA E F      +   P+  T++S I      G+  
Sbjct: 546 SGNLPSSQTYNVMISGFSKTNSISEA-ENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTG 604

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD--VVRALNRLPELGITPD 331
            A  +F+EM +  + PNL+  +SLI    +  R +D  +   L RL   G  P+
Sbjct: 605 LAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 1/203 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V++A  +Y +  N   R     F+T+I +    G       +   +      PN  TY +
Sbjct: 183 VDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTS 242

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+    R         ++  M  +G  PN  TY++L+         E+ + +  EM +KG
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG 302

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +V  Y   L    D G + EA E+   MK    C P+  TF+++I+  S  GK   A
Sbjct: 303 IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMK-KRGCVPNIQTFTALISGLSRDGKFEIA 361

Query: 282 EAMFNEMLEAGFEPNLFVLTSLI 304
             ++++ML  G  P      +LI
Sbjct: 362 IGLYHKMLADGLVPTTVTYNALI 384



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 113/248 (45%), Gaps = 11/248 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+  A  L +  +    + D   ++ LI  +   G  +   +++  M   G+ PN +
Sbjct: 459 KQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHV 518

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D      +      ++ +M ++G  P+  TY  ++  + +     +  +   +M
Sbjct: 519 TYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKM 578

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G+  +V  Y + +      G T  AF+IF +M+   N  P+ +T+SS+I      G+
Sbjct: 579 VKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME-KRNYFPNLYTYSSLIYGLCQEGR 637

Query: 278 VSEAEAMFN---EMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPD 331
             +AE M+N    +   G EPN+   T+L++     G+    D +V ++ +    G+ P 
Sbjct: 638 AEDAE-MYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK---KGLQPS 693

Query: 332 DRFCGCLL 339
           +     LL
Sbjct: 694 EEIYRALL 701



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 36/229 (15%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +F+TL+   G     D   ++Y +M   G++P+++T+N +++ + +  R  + K I   +
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                 PN  TY SL+  + R                                       
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHN-----------------------------------L 253

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D AF +F+ M   + C P+S T+S++I      G++ EA  M  EM++ G EP ++  T 
Sbjct: 254 DLAFAMFDRM-VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
            +     A  + + V  L ++ + G  P+ +    L++ +++  K E+ 
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIA 361



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 3/170 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC--LNVYEEMKAIGVKPN 155
           R G   +AF ++       +  +   +S+LI      G  +     N+   +   G +PN
Sbjct: 599 RNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY  L+  +    R ++   +   M   GL P+   Y +LL    +    E  L+++ 
Sbjct: 659 VDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFY 718

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWT 264
            M   G QL ++ Y  L+       + +EA  IF+ M     N    +WT
Sbjct: 719 SMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWT 768



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 11/187 (5%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           ++ EM+     PN+ TY++L+  +   GRA+   ++  +   +T  G  PN +TY +L++
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-EMYNLLARLTHYGCEPNVDTYTTLVK 667

Query: 200 AY-GRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSE 256
              G  R Y  D L V   M++KG+Q S  +Y  LL   C ++   + A  IF  M  + 
Sbjct: 668 GLCGEGRCYEADQLVV--SMQKKGLQPSEEIYRALLIGECKNLK-VESALNIFYSM-DTL 723

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             Q     + ++I        + EA+ +F  MLE  +  +    T L+    K   TD  
Sbjct: 724 GFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLC 783

Query: 317 VRALNRL 323
           ++ L+ +
Sbjct: 784 LKLLHVM 790


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 1/247 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A   ++  ++         ++ L++++G AGN+   L V +EM+  G KP+ +
Sbjct: 270 RDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAV 329

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L  +  RA    +       M   G+ PN  TY +++ AYG A   ++ L+++  M
Sbjct: 330 TYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWM 389

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+ G    V  YN +L M       +   E+  +M  S  C P+  T+++M+ +C  RG 
Sbjct: 390 KKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRS-GCTPNRVTWNTMLAVCGKRGM 448

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
                 +   M   G E       +LI  YG+     +  +  + +   G TP       
Sbjct: 449 EGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNA 508

Query: 338 LLNVMTQ 344
           LL+V+++
Sbjct: 509 LLSVLSR 515



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 124/257 (48%), Gaps = 8/257 (3%)

Query: 82  PKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 135
           P  P +  L  ++Y T        G  E A  L+   + E        ++ ++ +YG  G
Sbjct: 177 PLPPGSPGLDVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMG 236

Query: 136 -NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
            ++   + + EEM+A GV+P+  T + ++   GR     +    ++++   G  P   TY
Sbjct: 237 RSWPQIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTY 296

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
            +LL+ +G+A    + L V +EM+E G +     YN L    A  G+ +EA +  + M  
Sbjct: 297 NALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTM-V 355

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           S+   P+++T+++++T     GKV EA A+F+ M + GF P +     ++   GK  R +
Sbjct: 356 SKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFN 415

Query: 315 DVVRALNRLPELGITPD 331
            ++  L  +   G TP+
Sbjct: 416 VMLEMLGEMSRSGCTPN 432



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG V+ A  L+D  +   +    N ++ ++ + G    F+  L +  EM   G  PN +T
Sbjct: 376 AGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVT 435

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N +L   G+      V  + + M   G+    +T+ +L+ AYGR     +   +Y EM 
Sbjct: 436 WNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMT 495

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G    +T YN LL++ +  G    A  I   MK +E  +P+  ++S ++   +  G  
Sbjct: 496 AAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMK-NEGFKPNDMSYSLLLQCHAKGGNA 554

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  EA+  E+ E    P+  +L +L+    K +R + + RA   +   G  PD
Sbjct: 555 AGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPD 607



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 17/266 (6%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 128
           ++G +P    W N       K   + Y TR         + +R ++    +  + F+TLI
Sbjct: 426 RSGCTPNRVTW-NTMLAVCGKRGMEGYVTR---------VLERMKSCGVELCRDTFNTLI 475

Query: 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
             YG  G+      +Y+EM A G  P + TYN LL  + R       ++I  +M + G  
Sbjct: 476 SAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFK 535

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA---MCADVGYTDEA 245
           PN  +Y+ LL+ + +        ++ +E+ E  +  S  +  TL+     C  +   + A
Sbjct: 536 PNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERA 595

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           F+  E M  +   +PD   F+SM+++ +  G   +A  MF+ + + G  P+L    S++ 
Sbjct: 596 FQ--EVM--ARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMD 651

Query: 306 CYGKAQRTDDVVRALNRLPELGITPD 331
            Y K+  + +  + L RL    + PD
Sbjct: 652 MYAKSNESWEAEKILKRLKTSQLKPD 677



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 5/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN   A  +         + D   ++ L   Y  AG ++      + M + G+ PN  
Sbjct: 305 KAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAF 364

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++   G A +  +   ++  M  NG  P  NTY  +L   G+       L +  EM
Sbjct: 365 TYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEM 424

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--ENCQPDSWTFSSMITICSCR 275
              G   +   +NT+LA+C   G       + E MKS   E C+    TF+++I+     
Sbjct: 425 SRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRD---TFNTLISAYGRC 481

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           G  + A  M++EM  AGF P L    +L+    +          +N++   G  P+D
Sbjct: 482 GSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPND 538



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 111/233 (47%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+   AF +YD      +      ++ L+ +    G++    ++  +MK  G KPN +
Sbjct: 480 RCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDM 539

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+ LL    +      ++ I KE+ +  + P+W    +L+ +  + R  E     ++E+
Sbjct: 540 SYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEV 599

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G +  + ++N++L+M A  G   +A E+F+ +K      PD  T++SM+ + +   +
Sbjct: 600 MARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQG-GLSPDLITYNSMMDMYAKSNE 658

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             EAE +   +  +  +P++    +++  + K     +  R L+ +   G+ P
Sbjct: 659 SWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRP 711



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/234 (18%), Positives = 115/234 (49%), Gaps = 1/234 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G+   A  + ++ +NE ++ +  ++S L++ +   GN  G   + +E+    V P+ 
Sbjct: 514 SRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSW 573

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +    L+ +  + +R   ++  ++E+   G  P+   + S+L  Y +         ++  
Sbjct: 574 VILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDS 633

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K+ G+   +  YN+++ M A    + EA +I + +K+S+  +PD  ++++++     +G
Sbjct: 634 IKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQ-LKPDVVSYNTVMNGFCKQG 692

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            + EA+ + +EM+  G  P +    +L+  Y   +   +    ++ + +  ++P
Sbjct: 693 LIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSP 746



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 89/189 (47%), Gaps = 3/189 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F++++ +Y   G +     +++ +K  G+ P++ITYN+++D   ++   W+ + I K + 
Sbjct: 611 FNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLK 670

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            + L P+  +Y +++  + +    ++   +  EM   G++  V  Y+TL+   A      
Sbjct: 671 TSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFS 730

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           EA E+   M    N  P   T+  ++ + C  + +  EA     E+ E     +  +L++
Sbjct: 731 EAREVVSYM-IQRNLSPMELTYRRVVDSYCKAK-RFDEARGFLYEIAETDRNSDQKLLST 788

Query: 303 LIQCYGKAQ 311
           L      AQ
Sbjct: 789 LTARVESAQ 797


>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 426

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN ++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  IF +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LS++ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++ M+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNXMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 4/237 (1%)

Query: 96  DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           D RA +   A+ + +  +   +  D   ++ LI  Y   GN    L V+EEM   GV+  
Sbjct: 267 DARASD---AYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRAT 323

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TY +L+    R  +  +   ++      G+ P+   Y +L+ ++      E    +  
Sbjct: 324 AVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMA 383

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM++K +      YNTL+     +G  DEA  + ++M +    QPD  +++++I+  S +
Sbjct: 384 EMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEM-TKRGIQPDLVSYNTLISGYSMK 442

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           G + +A  + +EM++ GF P L    +LIQ   K ++ DD    +  +   GITPDD
Sbjct: 443 GDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDD 499



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 112/270 (41%), Gaps = 39/270 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G +E A  ++D     K  + P+A  ++ LI  Y   G  D  L   E+M   G+   
Sbjct: 195 KIGRMEDAVKVFDEMLT-KGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMT 253

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TYN L+  +    R      + +EM  NG SP+  TY  L+  Y +    +  L V+ 
Sbjct: 254 VATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFE 313

Query: 216 EMKEKGMQLS-----------------------------------VTLYNTLLAMCADVG 240
           EM +KG++ +                                   V +YN L+      G
Sbjct: 314 EMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGG 373

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             + A+EI  +M+  +   PD  T+++++      G++ EA  + +EM + G +P+L   
Sbjct: 374 DMERAYEIMAEME-KKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSY 432

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +LI  Y       D +R  + + + G  P
Sbjct: 433 NTLISGYSMKGDIKDALRVRDEMMDKGFNP 462



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 21/244 (8%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
           G V+ A  +  R   E+  I P+   ++TLI  +   G  +  + V++EM   G V P+ 
Sbjct: 161 GRVQAALEVM-REMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSA 219

Query: 157 ITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           + YN L+     +G+     Q +   ++M   G++    TY  L+ A        D  +V
Sbjct: 220 VMYNALIGGYCDVGKLDVALQYR---EDMVQRGIAMTVATYNLLMHALFMDARASDAYAV 276

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             EM++ G    V  YN L+      G   +A E+FE+M S +  +  + T++S+I + S
Sbjct: 277 LEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEM-SQKGVRATAVTYTSLIYVFS 335

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI--QCYGKAQRTDDVVRALNRLPEL---GI 328
            +G+V E + +FN  ++ G  P++ +  +LI   C G      D+ RA   + E+    I
Sbjct: 336 RKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTG-----GDMERAYEIMAEMEKKRI 390

Query: 329 TPDD 332
            PDD
Sbjct: 391 PPDD 394



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 1/173 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G V+    L++ A  +  R D   ++ LI  + T G+ +    +  EM+   + P+ 
Sbjct: 335 SRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDD 394

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+       R  + +T+  EMT  G+ P+  +Y +L+  Y      +D L V  E
Sbjct: 395 MTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDE 454

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           M +KG   ++  YN L+     +   D+A  + ++M  ++   PD  T+ S+I
Sbjct: 455 MMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEM-VAKGITPDDSTYISLI 506



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 7/225 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKT 177
           PNA  ++T+I  +   G     L V  EM+  G + P+  TY  L+    +  R      
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVK 204

Query: 178 IYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 235
           ++ EM   G ++P+   Y +L+  Y      +  L    +M ++G+ ++V  YN L+ A+
Sbjct: 205 VFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHAL 264

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
             D   +D A+ + E+M+ +    PD +T++ +I      G   +A  +F EM + G   
Sbjct: 265 FMDARASD-AYAVLEEMQKN-GFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRA 322

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
                TSLI  + +  +  +  R  N   + GI PD      L+N
Sbjct: 323 TAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALIN 367



 Score = 45.8 bits (107), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 9/189 (4%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L +Y ++K++ V   + + + LL ++  A        IY+      L     T+  +LR 
Sbjct: 70  LRLYAQLKSLSVPIPVASLHPLLSSLPSAPAFALFADIYRLR----LPLCTTTFNIMLRH 125

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
                     L + R+M       +VT YNT++A     G    A E+  +M+      P
Sbjct: 126 LCATGKPVRALELLRQMPRPN---AVT-YNTVIAGFCARGRVQAALEVMREMRERGGIAP 181

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           D +T++++I+     G++ +A  +F+EML  G   P+  +  +LI  Y    + D  ++ 
Sbjct: 182 DKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQY 241

Query: 320 LNRLPELGI 328
              + + GI
Sbjct: 242 REDMVQRGI 250


>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
           [Coelocarpum swinglei]
          Length = 440

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 136/272 (50%), Gaps = 23/272 (8%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 242

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 243 KANNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMI 302

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 303 XAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 357

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN          GKL
Sbjct: 358 VKDITVFERMIHLFSKYKKYANVVEVFDKMYGLGYFPDSNVIALVLNA--------YGKL 409

Query: 354 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 385
            E  +K+N       ++ +E QD+   F  E 
Sbjct: 410 HE-FDKAN-------EVYMEMQDVGCVFSDEV 433



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R +    D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G +P+   Y +++  +G+A+   D  S+  EM+  G+  + 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNA 120

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
           + Y+ LL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 SSYSALLTMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 29  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 88

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK     +++  EM   G+ PN ++Y++LL  Y   +   + LSV+ EM+E
Sbjct: 89  NAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYSALLTMYVENKKFLEALSVFAEMRE 148

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 149 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 208

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 209 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 267

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 268 SIWGKIGKLDRAAMLFQKLRTSGVEID 294



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL 
Sbjct: 69  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYSALLT 128

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 129 MYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 188

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 189 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 248

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ +   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 249 QEMQ-NRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIXAYER 307

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 308 AGLVAHAKRLLHELKRPDNIPRD 330



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 81/167 (48%), Gaps = 1/167 (0%)

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++ EM +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +  
Sbjct: 2   LFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            +    +A  IF  +K S    PD   +++MI +        +A ++ +EM  AG  PN 
Sbjct: 62  KLCDYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNA 120

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
              ++L+  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 SSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 167



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           ++ EM+EK +      Y+TL+      G  D A    + M+  +    D   +S++I + 
Sbjct: 2   LFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ-DRVPGDLVLYSNLIELS 60

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
                 S+A ++F+ +  +GF P+L    ++I  +GKA+   D    ++ +   G+ P+ 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNA 120

Query: 333 RFCGCLLNVMTQTPK 347
                LL +  +  K
Sbjct: 121 SSYSALLTMYVENKK 135



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 307 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++    + K+   V  ++ +M   G  P+ N  A +L AYG+    +    VY EM
Sbjct: 363 VFERMIHLFSKYKKYANVVEVFDKMYGLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEM 422

Query: 218 KEKGMQLSVTLYNTLLAM 235
           ++ G   S  ++  +L++
Sbjct: 423 QDVGCVFSDEVHFQMLSL 440


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 156/334 (46%), Gaps = 9/334 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   + TL+  +   G+ DG + +  +M   G +PN ITYNN++  +   ++      +
Sbjct: 147 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQL 206

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +KEM ++G   P+  TY++++ +  ++   +D   +   M  KG   +V  Y++LL    
Sbjct: 207 FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLC 266

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  DEA  + + M  S  C P+  T++++I      G++ EA  +  EM++ G +PN+
Sbjct: 267 KAGKLDEATALLQRMTRS-GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNV 325

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
              T L+  + K  + +D +  +  + E G  P+      LL++  +  K+E+ +  + +
Sbjct: 326 VTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK--KDEVERACQLL 383

Query: 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENA 417
                K G V  ++     I G  K  AT++   +    +    NC+ D+     +++  
Sbjct: 384 SSMIQK-GCVPNVVSYNTVIAGLCK--ATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAM 440

Query: 418 CKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLG 451
           CK   + +  E++  IQ    T   +   SL  G
Sbjct: 441 CKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 474



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 118/244 (48%), Gaps = 6/244 (2%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRID----PNAFS--TLIKLYGTAGNFDGCLNVYEEM 147
           +Y+T    +  +  L D  R  +  +D    PN FS  T++  +  A   +  L + E+M
Sbjct: 46  TYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQM 105

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
              G  P++++Y  +++ + +  +  +   +  +M   G  PN  TY +L+  + R    
Sbjct: 106 VMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDL 165

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           +  + + R+M E+G + +   YN ++         D A ++F++M+ S +C PD +T+S+
Sbjct: 166 DGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYST 225

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           ++      GKV +A  +   M+  G  PN+   +SL+    KA + D+    L R+   G
Sbjct: 226 IVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG 285

Query: 328 ITPD 331
            +P+
Sbjct: 286 CSPN 289



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 116/232 (50%), Gaps = 2/232 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYN 160
           V++A+ L++  +      +   +++L+     +  FD    +  EM +  G  P++ITYN
Sbjct: 446 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN 505

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D + ++KR  +   ++ +M  +GL+P+  TY+ ++ +  + R+ ++  +V   M + 
Sbjct: 506 TVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN 565

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G       Y TL+      G  D+A EI + +  S+   PD  TFS  I   S RG++ +
Sbjct: 566 GFDPGAITYGTLIDGFCKTGNLDKALEILQ-LLLSKGSYPDVVTFSIFIDWLSKRGRLRQ 624

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           A  +   ML AG  P+     +L++ +  A RT+D V     + + G  PD+
Sbjct: 625 AGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDN 676



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G V+ A  L +   ++    +   +S+L+     AG  D    + + M   G  PN+
Sbjct: 231 VKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNI 290

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN ++D   +  R  +   + +EM D G  PN  TY  LL A+ +    ED + +   
Sbjct: 291 VTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEV 350

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M EKG   ++  YN+LL M       + A ++   M   + C P+  +++++I       
Sbjct: 351 MVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM-IQKGCVPNVVSYNTVIAGLCKAT 409

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           KV E   +  +ML     P++    ++I    K  R D      N + E G TP+
Sbjct: 410 KVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPN 464



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 1/181 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ +TYN +++ + ++ R      + +EM DNG +PN  +Y ++L  + +A   E+ L +
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             +M  +G    V  Y T++     +   DEA  + + M     CQP+  T+ +++    
Sbjct: 102 LEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKM-IQRGCQPNVITYGTLVDGFC 160

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G +  A  +  +M E G+ PN     +++      ++ D  ++    + E G  P D 
Sbjct: 161 RVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDV 220

Query: 334 F 334
           F
Sbjct: 221 F 221



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 108/248 (43%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  E A GL +    + +  +   +++L+ ++      +    +   M   G  PN++
Sbjct: 337 KCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVV 396

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN ++  + +A +  +   + ++M  N   P+  T+ +++ A  +    +    ++  +
Sbjct: 397 SYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLI 456

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G   ++  YN+L+         D+A  +  +M   + C PD  T++++I       +
Sbjct: 457 QESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKR 516

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V  A  +F +ML  G  P+    + +I    K +  D+    L  + + G  P     G 
Sbjct: 517 VDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGT 576

Query: 338 LLNVMTQT 345
           L++   +T
Sbjct: 577 LIDGFCKT 584



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 2/115 (1%)

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  KG++    ++ ++L    D G   +A   F +M  S+ C PDS T+++MI   S   
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM--SKTCPPDSVTYNTMINGLSKSD 58

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++ +A  +  EM++ GF PN+F   +++  + KA R ++ +  L ++   G  PD
Sbjct: 59  RLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPD 113



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DP A  + TLI  +   GN D  L + + + + G  P+++T++  +D + +  R  Q   
Sbjct: 568 DPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGE 627

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + + M   GL P+  TY +LL+ +  A   ED + ++  M++ G +     Y TL+    
Sbjct: 628 LLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLV 687

Query: 238 D-VGYTDEAFEIFEDM 252
           D   Y D   E+ + M
Sbjct: 688 DKKSYKDLLAEVSKSM 703



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 7/175 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++  V+ A+ L+ +  ++    D   +S +I         D   NV E M   G  P  I
Sbjct: 513 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAI 572

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL---LRAYGRARYGEDTLSVY 214
           TY  L+D   +     +   I + +   G  P+  T++     L   GR R   + L   
Sbjct: 573 TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLET- 631

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
             M   G+      YNTLL    D   T++A ++FE M+    C+PD+ T+++++
Sbjct: 632 --MLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQC-GCEPDNATYTTLV 683



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 10/162 (6%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   GL  +   + S+LR    A    D +  +REM +     SVT YNT++   +    
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVT-YNTMINGLSKSDR 59

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D+A  + E+M  +    P+ +++++++       +V  A  +  +M+  G  P++   T
Sbjct: 60  LDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYT 118

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
           ++I    K  + D+  R ++++ + G  P+        D FC
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC 160



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 1/138 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN++ A  +     ++    D   FS  I      G       + E M   G+ P+ +
Sbjct: 583 KTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTV 642

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS-VYRE 216
           TYN LL     A R      +++ M   G  P+  TY +L+      +  +D L+ V + 
Sbjct: 643 TYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKS 702

Query: 217 MKEKGMQLSVTLYNTLLA 234
           M + G +L+  L + L A
Sbjct: 703 MVDTGFKLNHELSSKLEA 720


>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           urticoides]
          Length = 423

 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 167 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 226

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 227 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 286

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 287 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 341

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 342 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLN 388



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ ++  D   +S LI+L     ++   ++++  +K+ G  P+++ Y
Sbjct: 13  GLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKSSGFTPDLVAY 72

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 73  NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMRE 132

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 133 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 192

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SMI I     +  +A  +  EM   G EPN    +++I
Sbjct: 193 AIHLFRLMQ-RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTII 251

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 252 SIWGKVGKLDRAAMLFQKLRSSGVEID 278



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R ++  +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 53  AISIFSRLKSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 112

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 113 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 172

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 173 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 232

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 233 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 291

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 292 AGLVAHAKRLLHELKRPDNIPRD 314



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 1/188 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+  + 
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + T Y+TLL M  +     
Sbjct: 62  SSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFL 121

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+    +L
Sbjct: 122 EALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 304 IQCYGKAQ 311
           ++ YG A+
Sbjct: 181 LRVYGDAE 188



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 1/152 (0%)

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    +A  IF  +
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           KSS    PD   +++MI +        EA ++ +EM  AG  PN    ++L+  Y + ++
Sbjct: 61  KSS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKK 119

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             + +   + + E+    D   C  +++V  Q
Sbjct: 120 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 151



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 291 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 346

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+ +  +    VY EM
Sbjct: 347 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 406

Query: 218 KEKGMQLSVTLYNTLLA 234
           +E G   S  ++  +L+
Sbjct: 407 QEVGCVFSDEVHFQMLS 423


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 121/241 (50%), Gaps = 8/241 (3%)

Query: 98  RAGNVEMAFGLYDRARNE---KW-RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG 151
           +A  ++ A  ++DR R +    W  ++P+   F+TLI      G  +  L++ EEMK   
Sbjct: 328 KARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGN 387

Query: 152 V-KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           + +PN +TYN L+D   +A    +   ++++M + G+ PN  T  +L+    +       
Sbjct: 388 INRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRA 447

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           +  + EMK KG++ +   Y  L++    V   + A + FE+M SS  C PD+  + S+I+
Sbjct: 448 VEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSS-GCSPDAVVYYSLIS 506

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G++++A  + +++  AGF  +      LI  + K ++ + V   L  + E G+ P
Sbjct: 507 GLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKP 566

Query: 331 D 331
           D
Sbjct: 567 D 567



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 6/175 (3%)

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL  +GR +   ++  +  EM    + P+  T+  L+    +AR  ++ L V+  ++ 
Sbjct: 285 NALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRG 344

Query: 220 KG------MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           KG      ++  V L+NTL+     VG  ++   + E+MK     +P++ T++ +I    
Sbjct: 345 KGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFF 404

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             G    A  +F +M E G +PN+  L +L+    K  R    V   N +   G+
Sbjct: 405 KAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGL 459



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 8/220 (3%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +D  + + L+   G   +      +  EM+   ++P+++T+  L++ + +A+R  +   +
Sbjct: 279 VDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQV 338

Query: 179 YKEMTDN------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL-YNT 231
           +  +         G+ P+   + +L+    +    ED LS+  EMK   +    T+ YN 
Sbjct: 339 FDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNC 398

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           L+      G  D A E+F  M + E  QP+  T ++++      G+V  A   FNEM   
Sbjct: 399 LIDGFFKAGNFDRAHELFRQM-NEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGK 457

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G + N    T+LI  +      +  ++    +   G +PD
Sbjct: 458 GLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPD 497



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 93/231 (40%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N+  A   ++   +     D   + +LI     AG  +    V  ++K  G   +   YN
Sbjct: 478 NINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYN 537

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+    + K+  +V  +  EM + G+ P+  TY +L+   G+         V  +M ++
Sbjct: 538 VLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKE 597

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++ SV  Y  ++         DE  +IF +M S+    P++  ++ +I        V  
Sbjct: 598 GLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDR 657

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A ++  +M      PN     ++++     +        ++R+ E    PD
Sbjct: 658 AISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPD 708



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-V 152
           SY  + G+   A  + ++   E  R     +  +I  Y +  N D  + ++ EM +   V
Sbjct: 576 SYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKV 635

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
            PN + YN L+D + R     +  ++ ++M    + PN  TY ++L+ 
Sbjct: 636 PPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKG 683


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 130/283 (45%), Gaps = 6/283 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G +E A  + +  R++    +   FS +I  +   G  D    V++ M A G+KPN+
Sbjct: 429 VRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNV 488

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y+ ++D + R  +  + + +++EM +    PN  TY+S++R Y +       LS + +
Sbjct: 489 VLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWED 548

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G   +   Y+ L+    +VG + +A  +++ M     C PD+  ++SMI      G
Sbjct: 549 MLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHML-GRGCVPDTIAYTSMIKGFCVSG 607

Query: 277 KVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            V     +F +ML  G   P++     L+    +A+     +  LN++ +    PD   C
Sbjct: 608 MVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQMLDQACDPDTVTC 667

Query: 336 GCLLNVMT--QTPKEELGKLVE--CVEKSNSKLGYVVKLLLEE 374
              L  +   Q  +E L  LV   C  K N   G V+ ++L +
Sbjct: 668 NTFLREIEVGQKGQEFLEGLVVRLCNRKRNKAAGEVLMVMLAK 710



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIY 179
           AF+ ++      G+  G   ++  M+  G  P+  TYN LL  +   GRAK       + 
Sbjct: 350 AFNPVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAK---AAMGVM 406

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M    + P   TY +++    R    ED   V  EM+ KG+  +  +++ ++     +
Sbjct: 407 RRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKL 466

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A  +++ M ++   +P+   +S+MI   +  GK++EAE +F EM+EA   PN+  
Sbjct: 467 GEVDRASRVWDTMVAA-GIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMT 525

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            +S+++ Y +   +   +     +  +G TP+      L+N
Sbjct: 526 YSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLIN 566



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 3/213 (1%)

Query: 121 PNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           P+A +  + L+G    G     + V   M+   V P ++TY  ++D + R  R      +
Sbjct: 381 PSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKV 440

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM   GL PN   ++ ++  + +    +    V+  M   G++ +V LY+ ++   A 
Sbjct: 441 IEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLAR 500

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA  +F +M  ++ C P+  T+SSM+      G  S+A + + +ML  G  PN  
Sbjct: 501 CGKMTEAELLFREMIEAK-CVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAV 559

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + LI       R+ D +     +   G  PD
Sbjct: 560 TYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPD 592


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Glycine max]
          Length = 1113

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 97/175 (55%), Gaps = 1/175 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            +AGNV +A  L+ R   E  R D  +++ L++     G  D  ++ +EE+K  G+ P+ +
Sbjct: 940  KAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTV 999

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +YN +++ +G+++R  +  +++ EM + G+SP   TY +L+  +G A   +    ++ E+
Sbjct: 1000 SYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEEL 1059

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
            +  G++ +V  YN L+   +  G  D AF +F+ M     C P++ TF+ +   C
Sbjct: 1060 QFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIV-GCSPNAGTFAQLPNKC 1113



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 120/240 (50%), Gaps = 4/240 (1%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           K+   + G  +  F L  + R   + ++  +++ LI      G     L VY+ M + G+
Sbjct: 165 KALSIKGGIRQAPFAL-GKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGL 223

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           KP+M TY+ L+  +GR +    +  + +EM   GL PN  TY   +R  GRA   +D   
Sbjct: 224 KPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYG 283

Query: 213 VYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
           + + M+++G    V  Y  L+ A+CA  G  D+A E++  M++S + +PD  T+ ++++ 
Sbjct: 284 ILKTMEDEGCGPDVVTYTVLIDALCA-AGKLDKAKELYTKMRASSH-KPDLVTYITLMSK 341

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G +   +  ++EM   G+ P++   T L++   K+ + D     L+ +   GI P+
Sbjct: 342 FGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPN 401



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 1/212 (0%)

Query: 138  DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
            +  L ++ EMK  G  PN+ TYN LLD  G++KR  ++  +Y EM   G  PN  T+  +
Sbjct: 805  EAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNII 864

Query: 198  LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
            + A  ++      L +Y E+       +   Y  L+      G ++EA +IFE+M   + 
Sbjct: 865  ISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQ- 923

Query: 258  CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            C+P+   ++ +I      G V+ A  +F  M++ G  P+L   T L++C     R DD V
Sbjct: 924  CKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAV 983

Query: 318  RALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
                 L   G+ PD      ++N + ++ + E
Sbjct: 984  HYFEELKLTGLDPDTVSYNLMINGLGKSRRLE 1015



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 36/269 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG ++ A+G+     +E    D   ++ LI     AG  D    +Y +M+A   KP+++
Sbjct: 274 RAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLV 333

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+   G       VK  + EM  +G +P+  TY  L+ A  ++   +    +   M
Sbjct: 334 TYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVM 393

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-------- 269
           + +G+  ++  YNTL++   ++   DEA E+F +M+S     P ++++   I        
Sbjct: 394 RVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESL-GVAPTAYSYVLFIDYYGKLGD 452

Query: 270 ------------------TICSCR---------GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                             +I +C          G++ EA+ +FN++   G  P+      
Sbjct: 453 PEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNM 512

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +++CY KA + D   + L  +   G  PD
Sbjct: 513 MMKCYSKAGQIDKATKLLTEMLSEGCEPD 541



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + P A+S    I  YG  G+ +  L+ +E+MK  G+ P++   N  L ++    R 
Sbjct: 429 ESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRI 488

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + K I+ ++ + GLSP+  TY  +++ Y +A   +    +  EM  +G +  + + N+L
Sbjct: 489 REAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSL 548

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G  DEA+++F  +K  +   P   T++ +IT     GK+ +A  +F  M E+G
Sbjct: 549 IDTLYKAGRVDEAWQMFGRLKDLK-LAPTVVTYNILITGLGKEGKLLKALDLFGSMKESG 607

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             PN     +L+ C  K    D  ++   R+  +  +PD
Sbjct: 608 CPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPD 646



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 1/235 (0%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             ++ ++  A  LY    +  +   P  +  LI     AG  +  + ++EEM     KPN 
Sbjct: 869  VKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNC 928

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
              YN L++  G+A        ++K M   G+ P+  +Y  L+         +D +  + E
Sbjct: 929  AIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEE 988

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            +K  G+      YN ++         +EA  +F +MK +    P+ +T++++I      G
Sbjct: 989  LKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMK-NRGISPELYTYNALILHFGNAG 1047

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             V +A  MF E+   G EPN+F   +LI+ + K+   D       ++  +G +P+
Sbjct: 1048 MVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 102/213 (47%), Gaps = 3/213 (1%)

Query: 121  PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
            PN F+   L+  +G +   D    +Y EM   G KPN+IT+N ++  + ++    +   +
Sbjct: 821  PNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDL 880

Query: 179  YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            Y E+     SP   TY  L+    +A   E+ + ++ EM +   + +  +YN L+     
Sbjct: 881  YYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGK 940

Query: 239  VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
             G  + A ++F+ M   E  +PD  +++ ++      G+V +A   F E+   G +P+  
Sbjct: 941  AGNVNIACDLFKRM-IKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTV 999

Query: 299  VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                +I   GK++R ++ +   + +   GI+P+
Sbjct: 1000 SYNLMINGLGKSRRLEEALSLFSEMKNRGISPE 1032



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 3/223 (1%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PN   ++  I++ G AG  D    + + M+  G  P+++TY  L+D +  A + 
Sbjct: 254 ETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKL 313

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + K +Y +M  +   P+  TY +L+  +G     E     + EM+  G    V  Y  L
Sbjct: 314 DKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTIL 373

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G  D+AF++ + M+      P+  T++++I+      ++ EA  +FN M   G
Sbjct: 374 VEALCKSGKVDQAFDMLDVMRV-RGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLG 432

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
             P  +     I  YGK    +  +    ++ + GI P    C
Sbjct: 433 VAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAAC 475



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 154/337 (45%), Gaps = 26/337 (7%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  A  +++   N     D   ++ ++K Y  AG  D    +  EM + G +P++I  
Sbjct: 486 GRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVV 545

Query: 160 NNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           N+L+DT+   GR    WQ   ++  + D  L+P   TY  L+   G+       L ++  
Sbjct: 546 NSLIDTLYKAGRVDEAWQ---MFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGS 602

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MKE G   +   +N LL         D A ++F  M +  NC PD  T++++I      G
Sbjct: 603 MKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRM-TIMNCSPDVLTYNTIIYGLIKEG 661

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR-ALNRLPELGITPDDRFC 335
           +   A   +++M +    P+   L +L+    K  R +D ++  +  + + G+   ++  
Sbjct: 662 RAGYAFWFYHQM-KKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVW 720

Query: 336 GCLLN-VMTQTPKEEL-----GKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
           G L+  ++ +   EE      G +   + + ++ +  ++++L +++        +A +LF
Sbjct: 721 GELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKK-----ALDAKKLF 775

Query: 390 NSISKDV-----KKAYCNCLIDLCVNLNLLENACKLL 421
           +  +K +      ++Y NCL+D  +  N+ E A KL 
Sbjct: 776 DKFTKSLGTHPTPESY-NCLMDGLLGCNITEAALKLF 811



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 106/252 (42%), Gaps = 3/252 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG ++ A  L     +E    D    ++LI     AG  D    ++  +K + + P +
Sbjct: 518 SKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTV 577

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN L+  +G+  +  +   ++  M ++G  PN  T+ +LL    +    +  L ++  
Sbjct: 578 VTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCR 637

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M        V  YNT++      G    AF  +  MK  +   PD  T  +++      G
Sbjct: 638 MTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMK--KFLSPDHVTLYTLLPGVVKDG 695

Query: 277 KVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           +V +A  +  E + ++G + +  V   L++C       ++ +     L    I  DD   
Sbjct: 696 RVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLI 755

Query: 336 GCLLNVMTQTPK 347
             L+ V+ +  K
Sbjct: 756 LPLIRVLCKQKK 767



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 2/180 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           L+  + + K+    K ++ + T + G  P   +Y  L+         E  L ++ EMK  
Sbjct: 758 LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNA 817

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   ++  YN LL         DE FE++ +M     C+P+  T + +I+       +++
Sbjct: 818 GCCPNIFTYNLLLDAHGKSKRIDELFELYNEM-LCRGCKPNIITHNIIISALVKSNSINK 876

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A  ++ E++   F P       LI    KA R+++ ++    +P+    P+      L+N
Sbjct: 877 ALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILIN 936


>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           cujabensis]
          Length = 359

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 137 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 196

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 197 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 256

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 257 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 311

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 312 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLN 358



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 23  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSYSTLLT 82

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 83  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 142

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 143 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 202

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 203 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 261

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 262 AGLVAHAKRLLHELKRPDNIPRD 284



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 63  SEMKTXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 181

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SMI I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 325 ELGITPD 331
             G+  D
Sbjct: 242 SSGVEID 248


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 1/213 (0%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +D   ++ LI  +   G  +GC  + EEM   G++P++ TYN LL  +    +      +
Sbjct: 521 MDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKL 580

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E   +GL  N +TY  ++  Y +A   ED  +++ E+  K M+L+  +YN ++     
Sbjct: 581 WDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQ 640

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    A ++ E+MKS +   P+  T+SS+I      G V +A+ + +EM + GF PN+ 
Sbjct: 641 NGNVAAALQLLENMKS-KGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVV 699

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             T+LI  Y K  + D        +    I P+
Sbjct: 700 CYTALIGGYCKLGQMDTAESTWLEMISFNIHPN 732



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 91/186 (48%), Gaps = 7/186 (3%)

Query: 111 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---G 167
           R  +E    D  +F+ +I      G  +  + ++ +M+ +G+ PN++TYN +++ +   G
Sbjct: 233 RVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNG 292

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R    +++K   ++MT  G+ PN  TY +L+    +  + +    V  EM   G   +V 
Sbjct: 293 RLDNAFELK---EKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVV 349

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           ++N L+     +G  + A +I +D+  S+N  P S T  S++       ++  AE    E
Sbjct: 350 VFNNLIDGYCKMGNIEGALKI-KDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEE 408

Query: 288 MLEAGF 293
           +L +G 
Sbjct: 409 ILSSGL 414



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 1/175 (0%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T N L+  +  A +  +   I KEM + GL  +  TY +L+  +      E    +  E
Sbjct: 489 VTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREE 548

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M ++G+Q  +  YN LL    +VG  D+A +++++ K+S     +  T+  M+       
Sbjct: 549 MTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKAS-GLISNIHTYGIMMEGYCKAN 607

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++ + E +FNE+L    E N  V   +I+ + +       ++ L  +   GI P+
Sbjct: 608 RIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPN 662



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 36/235 (15%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  +E    L++   ++K  ++   ++ +IK +   GN    L + E MK+ G+ PN  
Sbjct: 605 KANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCA 664

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+  +         K +  EM   G  PN   Y +L+  Y +    +   S + EM
Sbjct: 665 TYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEM 724

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
                                                S N  P+ +T++ MI      G 
Sbjct: 725 ------------------------------------ISFNIHPNKFTYTVMIDGYCKLGN 748

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           + +A  +  +M E+G  P++     L   + KA   D+  +  +++   G+  D+
Sbjct: 749 MEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDE 803



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 95/211 (45%), Gaps = 8/211 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            S+L+K    A  F+ C  V+  M   G  P++ ++ N+++ + +  +      ++ +M 
Sbjct: 216 LSSLVK----ANEFEKCCEVFRVMSE-GACPDVFSFTNVINALCKGGKMENAIELFMKME 270

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+SPN  TY  ++    +    ++   +  +M  KG+Q ++  Y  L+     + + D
Sbjct: 271 KLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFD 330

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +   + ++M  S    P+   F+++I      G +  A  + + M+     P    L SL
Sbjct: 331 KVNHVLDEMIGS-GFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSL 389

Query: 304 IQCYGKAQRTDDVVRALNRL--PELGITPDD 332
           +Q + K+ + +    AL  +    L I PD+
Sbjct: 390 MQGFCKSDQIEHAENALEEILSSGLSIHPDN 420



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 2/130 (1%)

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + V+  +  KG   S+   N LL+        ++  E+F  M  SE   PD ++F+++I 
Sbjct: 194 VDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVM--SEGACPDVFSFTNVIN 251

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                GK+  A  +F +M + G  PN+     +I    +  R D+      ++   G+ P
Sbjct: 252 ALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQP 311

Query: 331 DDRFCGCLLN 340
           + +  G L+N
Sbjct: 312 NLKTYGALIN 321



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 2/154 (1%)

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++  +   G  P+  T   LL +  +A   E    V+R M E       +  N + A+C 
Sbjct: 196 VFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCK 255

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  + A E+F  M+      P+  T++ +I      G++  A  +  +M   G +PNL
Sbjct: 256 G-GKMENAIELFMKMEKL-GISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNL 313

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               +LI    K    D V   L+ +   G  P+
Sbjct: 314 KTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPN 347



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 102/259 (39%), Gaps = 42/259 (16%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +PN   F+ LI  Y   GN +G L + + M +  + P  +T  +L+    ++ +    + 
Sbjct: 345 NPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAEN 404

Query: 178 IYKEMTDNGLS--PNWNTYASL------LRAYGRARYGEDTLS----------------- 212
             +E+  +GLS  P+ N Y+ +       R +   R+ +  LS                 
Sbjct: 405 ALEEILSSGLSIHPD-NCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGL 463

Query: 213 -----------VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP- 260
                      ++  + EKG   S    N L+      G   EA  I ++M   E   P 
Sbjct: 464 CKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEM--LERGLPM 521

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  T++++I      GKV     +  EM + G +P+++    L++      + DD ++  
Sbjct: 522 DRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLW 581

Query: 321 NRLPELGITPDDRFCGCLL 339
           +     G+  +    G ++
Sbjct: 582 DEFKASGLISNIHTYGIMM 600



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 117 WRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           + I PN F+   +I  Y   GN +   N+  +MK  G+ P+++TYN L +   +A     
Sbjct: 727 FNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDN 786

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAY 201
              +  +M   GL  +  TY +L+  +
Sbjct: 787 AFKVCDQMATEGLPVDEITYTTLVHGW 813


>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           filifolia]
          Length = 439

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 242

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 243 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 302

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 303 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 357

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 358 VKDITVFERMIHLLSKYKKXSNVVEVFDKMRGLGYFPDSDVIAIVLN 404



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 60

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 TSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 69  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 128

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 129 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 188

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 189 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 248

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 249 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 307

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 308 AGLVAHAKRLLHELKRPDNIPRD 330



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 307 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 363 VFERMIHLLSKYKKXSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 422

Query: 218 KEKGMQLSVTLYNTLLA 234
           +E G   S  ++  +L+
Sbjct: 423 QEVGCVFSDEVHFQMLS 439


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 1/213 (0%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +D   ++ LI  +   G  +GC  + EEM   G++P++ TYN LL  +    +      +
Sbjct: 498 MDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKL 557

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E   +GL  N +TY  ++  Y +A   ED  +++ E+  K M+L+  +YN ++     
Sbjct: 558 WDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQ 617

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    A ++ E+MKS +   P+  T+SS+I      G V +A+ + +EM + GF PN+ 
Sbjct: 618 NGNVAAALQLLENMKS-KGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVV 676

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             T+LI  Y K  + D        +    I P+
Sbjct: 677 CYTALIGGYCKLGQMDTAESTWLEMISFNIHPN 709



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 91/186 (48%), Gaps = 7/186 (3%)

Query: 111 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---G 167
           R  +E    D  +F+ +I      G  +  + ++ +M+ +G+ PN++TYN +++ +   G
Sbjct: 210 RVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNG 269

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R    +++K   ++MT  G+ PN  TY +L+    +  + +    +  EM   G   +V 
Sbjct: 270 RLDNAFELK---EKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVV 326

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           ++N L+     +G  + A +I +D+  S+N  P S T  S++       ++  AE    E
Sbjct: 327 VFNNLIDGYCKMGNIEGALKI-KDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEE 385

Query: 288 MLEAGF 293
           +L +G 
Sbjct: 386 ILSSGL 391



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 1/175 (0%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T N L+  +  A +  +   I KEM + GL  +  TY +L+  +      E    +  E
Sbjct: 466 VTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREE 525

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M ++G+Q  +  YN LL    +VG  D+A +++++ K+S     +  T+  M+       
Sbjct: 526 MTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKAS-GLISNIHTYGIMMEGYCKAN 584

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++ + E +FNE+L    E N  V   +I+ + +       ++ L  +   GI P+
Sbjct: 585 RIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPN 639



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 36/235 (15%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  +E    L++   ++K  ++   ++ +IK +   GN    L + E MK+ G+ PN  
Sbjct: 582 KANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCA 641

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+  +         K +  EM   G  PN   Y +L+  Y +    +   S + EM
Sbjct: 642 TYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEM 701

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
                                                S N  P+ +T++ MI      G 
Sbjct: 702 ------------------------------------ISFNIHPNKFTYTVMIDGYCKLGN 725

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           + +A  +  +M E+G  P++     L   + KA   D+  +  +++   G+  D+
Sbjct: 726 MEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDE 780



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 95/211 (45%), Gaps = 8/211 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            S+L+K    A  F+ C  V+  M   G  P++ ++ N+++ + +  +      ++ +M 
Sbjct: 193 LSSLVK----ANEFEKCCEVFRVMSE-GACPDVFSFTNVINALCKGGKMENAIELFMKME 247

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+SPN  TY  ++    +    ++   +  +M  KG+Q ++  Y  L+     + + D
Sbjct: 248 KLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFD 307

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +   I ++M  +    P+   F+++I      G +  A  + + M+     P    L SL
Sbjct: 308 KVNHILDEMIGA-GFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSL 366

Query: 304 IQCYGKAQRTDDVVRALNRL--PELGITPDD 332
           +Q + K+ + +    AL  +    L I PD+
Sbjct: 367 MQGFCKSDQIEHAENALEEILSSGLSIHPDN 397



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + V+  +  KG   S+   N  L+        ++  E+F  M  SE   PD ++F+++I 
Sbjct: 171 VDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVM--SEGACPDVFSFTNVIN 228

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                GK+  A  +F +M + G  PN+     +I    +  R D+      ++   G+ P
Sbjct: 229 ALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQP 288

Query: 331 DDRFCGCLLN 340
           + +  G L+N
Sbjct: 289 NLKTYGALIN 298



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 102/259 (39%), Gaps = 42/259 (16%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +PN   F+ LI  Y   GN +G L + + M +  + P  +T  +L+    ++ +    + 
Sbjct: 322 NPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAEN 381

Query: 178 IYKEMTDNGLS--PNWNTYASL------LRAYGRARYGEDTLS----------------- 212
             +E+  +GLS  P+ N Y+ +       R +   R+ +  LS                 
Sbjct: 382 ALEEILSSGLSIHPD-NCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGL 440

Query: 213 -----------VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP- 260
                      ++  + EKG   S    N L+      G   EA  I ++M   E   P 
Sbjct: 441 CKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEML--ERGLPM 498

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  T++++I      GKV     +  EM + G +P+++    L++      + DD ++  
Sbjct: 499 DRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLW 558

Query: 321 NRLPELGITPDDRFCGCLL 339
           +     G+  +    G ++
Sbjct: 559 DEFKASGLISNIHTYGIMM 577



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 117 WRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           + I PN F+   +I  Y   GN +   N+  +MK  G+ P+++TYN L +   +A     
Sbjct: 704 FNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDN 763

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAY 201
              +  +M   GL  +  TY +L+  +
Sbjct: 764 AFKVCDQMATEGLPVDEITYTTLVHGW 790


>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 426

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVVVFDKMRGLGYFPDSNVIALVLN 398



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 38.5 bits (88), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 10/160 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +           + +  Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                 I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++ +
Sbjct: 321 IPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVVVFDK 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 381 MRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 151/323 (46%), Gaps = 23/323 (7%)

Query: 113 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEM------KAIGVKPNMITYNNLLD 164
           R +K    PNA  + TL+K     GN    L +++EM        I  KP +I+Y+ ++D
Sbjct: 191 RMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIID 250

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + + +R  + + +++EM   G++P   +Y SL+         E+   ++ EM  +G+Q 
Sbjct: 251 ALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW--------EEAKRLFNEMVNQGVQP 302

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  +N L+ +    G   EA ++ E M       P+  T++S+I      G ++ A  +
Sbjct: 303 NVVTFNVLIDVLCKEGKVIEAKDLLEVM-IQRGIVPNLLTYNSLIEGFCLVGDLNSAREL 361

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           F  M   G EP++   T LI  Y K  + ++ ++  N + ++G  PD +  G LL  + Q
Sbjct: 362 FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ 421

Query: 345 TPKEELGKLVECVEKSNSKLG--YVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAY 400
             K    K +  V K     G  Y+  + L      G    EA ELFN + S ++K    
Sbjct: 422 GGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCL-FEAMELFNKLKSYNIKLDIE 480

Query: 401 C-NCLIDLCVNLNLLENACKLLE 422
           C NCLID       LE A +L E
Sbjct: 481 CFNCLIDGLCKAGKLETAWELFE 503



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 103/249 (41%), Gaps = 36/249 (14%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN   +++LI+ +   G+ +    ++  M + G +P++I Y  L++   +  +  +  
Sbjct: 335 IVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAM 394

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +Y  M   G  P+  TY +LL    +     D   ++  MK  G+   + +Y   L   
Sbjct: 395 KLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGL 454

Query: 237 ADVGYTDEAFEIFEDMKS----------------------------------SENCQPDS 262
              G   EA E+F  +KS                                   E  QPD 
Sbjct: 455 CKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDV 514

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++ MI      G+V +A  +F +M + G  P+     +LI+ + ++++ + VV  L+ 
Sbjct: 515 VTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHM 574

Query: 323 LPELGITPD 331
           + +  ++ D
Sbjct: 575 MVQRDVSLD 583



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 1/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  L++   N+  + +   F+ LI +    G      ++ E M   G+ PN++TYN+L
Sbjct: 286 EEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSL 345

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++           + ++  M   G  P+   Y  L+  Y +    E+ + +Y  M + G 
Sbjct: 346 IEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGK 405

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +  V  Y  LL      G   +A ++F  MK       D + +   +      G + EA 
Sbjct: 406 RPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVY-GIPGDLYIYGIFLNGLCKNGCLFEAM 464

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +FN++     + ++     LI    KA + +       +LP+  + PD
Sbjct: 465 ELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPD 513



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 66/124 (53%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+++ ++   ++D   F+ LI     AG  +    ++E++    ++P+++TYN ++ 
Sbjct: 463 AMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIH 522

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R  +  +   ++++M  NG +P+  TYA+L+R +  ++  E  + +   M ++ + L
Sbjct: 523 EFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSL 582

Query: 225 SVTL 228
            V +
Sbjct: 583 DVNI 586



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNE 287
           +  LL+  A + +  + F ++  M+ S    PD  T + ++  C C   +V E  A+   
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLS-GISPDCCTLNILLN-CLCNVNRVGEGLAVMAG 156

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +L  G+ P++   T+LI+      R         R+ +LG TP+    G L+  + +T
Sbjct: 157 ILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRT 214


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 3/233 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+VE A  L +   +     D   ++TLI LY   G     L + + M+  GV P+++
Sbjct: 209 KSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIV 268

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+    R  R  +   +++E+  NG +PN  TY +L+  Y R    E+ L +   M
Sbjct: 269 TYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVM 326

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+   V  YN++L    + G   +A  +  +M S    +PD+ T +++I      G 
Sbjct: 327 EVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEM-SERKVEPDNVTCNTLINAYCKIGD 385

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +  A  +  +MLEAG +P+ F   +LI  + K    D     L  + + G +P
Sbjct: 386 MGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSP 438



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 7/215 (3%)

Query: 120 DPNA----FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           DP++     S L+  Y  +      + V+E M+  G KP++     LL+++ +A+    V
Sbjct: 122 DPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMV 181

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             +YK+M   G+ PN + +  L+ A  ++   E    +  EM+ + +   +  YNTL+++
Sbjct: 182 WKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISL 241

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G   EA  I +D        PD  T++S+I      G++ EA  +F E+   G  P
Sbjct: 242 YCKKGMHYEALGI-QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATP 298

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           N    T+LI  Y +    ++ +R    +   G+ P
Sbjct: 299 NHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHP 333



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 105/237 (44%), Gaps = 5/237 (2%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  +++  R   ++   +A + L+     A   +    VY++M  +GV PN+  +N L+ 
Sbjct: 146 AIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 205

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              ++    + + +  EM    + P+  TY +L+  Y +     + L +   M+  G+  
Sbjct: 206 ACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSP 265

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            +  YN+L+      G   EA  +F ++  +    P+  T++++I    CR    E    
Sbjct: 266 DIVTYNSLIYGFCREGRMREALRLFREINGA---TPNHVTYTTLID-GYCRVNDLEEALR 321

Query: 285 FNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             E++E  G  P +    S+++   +  +  D  R LN + E  + PD+  C  L+N
Sbjct: 322 LREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLIN 378



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  L +     K   D    +TLI  Y   G+    + V ++M   G+KP+  T+
Sbjct: 349 GKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTF 408

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+    +       K    EM D G SP+++TY+ L+ +Y      E  + +  E+  
Sbjct: 409 KALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSR 468

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG+ + +++Y  L+     +   + A  IF  M+  +  + DS  ++S+       GK  
Sbjct: 469 KGLFVDISVYRALIRRLCKIDKIESAERIFTLMQ-GKGMKGDSVVYTSLAYAYFKAGKAI 527

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
            A  M +EM     +  L +   + +C+  +   D  +  L
Sbjct: 528 AASDMLDEM----DKRRLMITLKIYRCFSASYAGDGSILGL 564



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 38/231 (16%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TLI  Y    + +  L + E M+  G+ P ++TYN++L  +    +      +
Sbjct: 298 PNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRL 357

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM++  + P+  T  +L+ AY +       + V ++M E G+                
Sbjct: 358 LNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGL---------------- 401

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                               +PD +TF ++I       +V  A+    EML+AGF P+  
Sbjct: 402 --------------------KPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYS 441

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             + L+  Y      + V+R  + L   G+  D      L+  + +  K E
Sbjct: 442 TYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIE 492



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 4/228 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  ++E A  L +    E        ++++++     G       +  EM    V+P+ +
Sbjct: 312 RVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNV 371

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N L++   +         + K+M + GL P+  T+ +L+  + +    +       EM
Sbjct: 372 TCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEM 431

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G   S + Y+ L+    D     EA     D  S +    D   + ++I       K
Sbjct: 432 LDAGFSPSYSTYSWLVDSYYDQD-NKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDK 490

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNR 322
           +  AE +F  M   G + +  V TSL   Y   GKA    D++  +++
Sbjct: 491 IESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDK 538


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 142/301 (47%), Gaps = 7/301 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  V++A   +  A   +   D   F+T+I      G      +V +++KA G+ P++ T
Sbjct: 169 AKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVAT 228

Query: 159 YNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           YN+L+D     G A   + V  + KEM + G+SP   T+  L+  Y +       + V+ 
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFE 288

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK++G+  SV  YN+L++     G  +E  ++ E+M+      P+  TF  ++     +
Sbjct: 289 EMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL-GLSPNEITFGCVLKGFCKK 347

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G +++A    + M E   EP++ +   LI  Y +  + +D +     + + GI+P+    
Sbjct: 348 GMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTY 407

Query: 336 GCLLNVMTQTP--KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
            CL+   +++   +   G L E  EK          +L+     +G+ +K A +L + +S
Sbjct: 408 NCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRK-AVKLLDEMS 466

Query: 394 K 394
           +
Sbjct: 467 E 467



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 9/218 (4%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P A  F  LI  Y    N    + V+EEMK  G+  +++TYN+L+  +    +  +  
Sbjct: 260 ISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGV 319

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM D GLSPN  T+  +L+ + +     D       M E+ ++  V +YN L+ + 
Sbjct: 320 KLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVY 379

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             +G  ++A  + E M + +   P+  T++ +IT  S  G    A  + +EM E G E +
Sbjct: 380 RRLGKMEDAMAVKEAM-AKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEAD 438

Query: 297 LF---VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +    VL   + C G+ ++    V+ L+ + E+G+ P+
Sbjct: 439 VVTYNVLIGALCCKGEVRKA---VKLLDEMSEVGLEPN 473



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 101/234 (43%), Gaps = 5/234 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G VE    L +    E   + PN   F  ++K +   G      +  + M    V+P+++
Sbjct: 313 GKVEEGVKLMEEM--EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 370

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+D   R  +      + + M   G+SPN  TY  L+  + R+        +  EM
Sbjct: 371 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG++  V  YN L+      G   +A ++ ++M S    +P+  T++++I     +G 
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGN 489

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  A  +   M +     N+      I+ + +  + D+    LN + +  + P+
Sbjct: 490 IKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPN 543



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 23/203 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R G +E A  + +     K  I PN   ++ LI  +  +G++     + +EMK  G++ +
Sbjct: 381 RLGKMEDAMAVKEAM--AKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEAD 438

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++TYN L+  +       +   +  EM++ GL PN  TY ++++ +      +    +  
Sbjct: 439 VVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRT 498

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSC 274
            M++   + +V  YN  +     +G  DEA ++  +M   + C  P+  T+         
Sbjct: 499 RMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEM--LDKCLVPNGITY--------- 547

Query: 275 RGKVSEAEAMFNEMLEAGFEPNL 297
                  E +   M+E G+ P++
Sbjct: 548 -------ETIKEGMMEKGYTPDI 563



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 12/194 (6%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGED 209
           +P+  + N LL  +  AKR    +  ++      +SP+   +NT  S L   G+ R   D
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ----PDSWTF 265
              V +++K  G+  SV  YN+L+      G     + +  DM   E  +    P + TF
Sbjct: 213 ---VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV--DMLLKEMVEAGISPTAVTF 267

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
             +I         + A  +F EM + G   ++    SLI       + ++ V+ +  + +
Sbjct: 268 GVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMED 327

Query: 326 LGITPDDRFCGCLL 339
           LG++P++   GC+L
Sbjct: 328 LGLSPNEITFGCVL 341



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 6/151 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R+G+   A GL D  + +    D   ++ LI      G     + + +EM  +G++PN 
Sbjct: 415 SRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNH 474

Query: 157 ITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           +TYN ++      G  K  ++++T  ++         +N +       G+     D L+ 
Sbjct: 475 LTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLN- 533

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
             EM +K +  +   Y T+     + GYT +
Sbjct: 534 --EMLDKCLVPNGITYETIKEGMMEKGYTPD 562


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 14/255 (5%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           GL  +  TY  +++A+ R+R       VY EM+ KG +L +  YN LL   A  G  D+A
Sbjct: 123 GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQA 182

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           F++FEDMK  ++C PD++T++ +I +    G+ S+  + F+EM+  G   NL    ++I+
Sbjct: 183 FQVFEDMK-QKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIE 241

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEELGKLVECVEK--SNS 362
             GK +  D V+  L+++ E    P+       L+++ T+     L ++++   +  + S
Sbjct: 242 ALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRS 301

Query: 363 KLGYVVKLLLEEQDIEGDFKKEATELF----NSISKDVKKAYCNCLIDLCVNLNLLENAC 418
              Y+VK L      +     EA  +F    NS  K  + A+ + L  LC     LE A 
Sbjct: 302 IYSYLVKSL-----CKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLE-AI 355

Query: 419 KLLELGLTLEVYTDI 433
            LL +     + TD+
Sbjct: 356 DLLHMMPEKGIVTDV 370



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 125/263 (47%), Gaps = 37/263 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+   A  ++ R  N   + D +AF +++++   A      +++   M   G+  ++ 
Sbjct: 312 KSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVG 371

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +   +G+ K+   +  ++ +M  NG+ P+  TY  ++ +YGR              
Sbjct: 372 MYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR-------------- 417

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
                                VG  D+A E+FE M++S +C+PD  T++S+I      G 
Sbjct: 418 ---------------------VGLVDKASELFEVMEAS-SCKPDVVTYNSLINCLGKHGD 455

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F EM E G++P++F  + LI+C+GK+ + +      + +   G TP+      
Sbjct: 456 LDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNI 515

Query: 338 LLNVMTQTPK-EELGKLVECVEK 359
           LL+ + +  K EE  KL E +++
Sbjct: 516 LLDCLERRGKTEEAHKLYETMKQ 538



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 1/159 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+D+ +      D   ++ +I  YG  G  D    ++E M+A   KP+++TYN+L++ +G
Sbjct: 392 LFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLG 451

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     +   ++KEM + G  P+  TY+ L+  +G++   E   S++ EM  +G   ++ 
Sbjct: 452 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 511

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            YN LL      G T+EA +++E MK  +   PDS T+S
Sbjct: 512 TYNILLDCLERRGKTEEAHKLYETMK-QQGLIPDSITYS 549



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 1/172 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           N++++MK  G+ P++ TYN ++ + GR     +   +++ M  +   P+  TY SL+   
Sbjct: 391 NLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCL 450

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           G+    ++   +++EM+EKG    V  Y+ L+         + A  +F++M  SE C P+
Sbjct: 451 GKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEM-ISEGCTPN 509

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
             T++ ++     RGK  EA  ++  M + G  P+    + L +   ++QRT
Sbjct: 510 IVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQRT 561



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 6/235 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+  V   F +Y+  R + +++D  A++ L+     AG  D    V+E+MK     P+  
Sbjct: 140 RSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAY 199

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+   G+A R  +  + + EM   G   N   + +++ A G+ +  +  + V  +M
Sbjct: 200 TYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKM 259

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-G 276
            E   Q +   Y+  L + A  G      E+ +      N    S+   S+     C+ G
Sbjct: 260 VENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSL-----CKSG 314

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SEA  +F  M  +  + +     S+++    A++T + +  L+ +PE GI  D
Sbjct: 315 HASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTD 369



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  L++       + D   +++LI   G  G+ D    +++EM+  G  P++ 
Sbjct: 417 RVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVF 476

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G++ +     +++ EM   G +PN  TY  LL    R    E+   +Y  M
Sbjct: 477 TYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETM 536

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y+ L
Sbjct: 537 KQQGLIPDSITYSIL 551



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 59/108 (54%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ A  L+   + + +  D   +S LI+ +G +   +   ++++EM + G  PN++
Sbjct: 452 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 511

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           TYN LLD + R  +  +   +Y+ M   GL P+  TY+ L R   R++
Sbjct: 512 TYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQ 559


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 7/252 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI--GVK 153
           RAGNV MA  L   A+ EK R+ PNA   +T++      G     L  + E + +    +
Sbjct: 258 RAGNVGMACELV--AKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEAR 315

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
            N +TY+ L+              ++ EM D G SP+   Y +++    +A   +D  S+
Sbjct: 316 GNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSM 375

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
              MK+ G QL    YN L+         +EA+E+  +MK +   QPD +T++++++   
Sbjct: 376 ATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEA-GLQPDVYTYNTLLSGLC 434

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G     + +  +M++ G  P++    +LI  Y K  + D+ +R    + E GI P+  
Sbjct: 435 KAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTV 494

Query: 334 FCGCLLNVMTQT 345
               L++ + ++
Sbjct: 495 IYNTLIDFLCKS 506



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+AG ++ A+ +    +   +++D  A++ LI  +      +    +  EMK  G++P++
Sbjct: 364 TQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDV 423

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN LL  + +A     V  +  +M D G  P+  T+ +L+  Y +    ++ L ++R 
Sbjct: 424 YTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRS 483

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G+Q +  +YNTL+        T  A E+F++M+  ++   +  TF++++     + 
Sbjct: 484 MDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMR-EKHVPANVTTFNALLKGLRDKN 542

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
              +A  + + M E    P+   +  L++
Sbjct: 543 MPEKAFELMDLMREGRCTPDYVTIDILME 571



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 42/237 (17%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY-------------------- 159
           D +AF+TL+     AG+  G   ++  M+   V+PN++TY                    
Sbjct: 136 DTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSVL 195

Query: 160 -----------------NNLLDTMGRAKRPWQ-VKTIYKEM-TDNGLSPNWNTYASLLRA 200
                            NN++D + +  R  Q VK + + M + +G +PN  TY  L  A
Sbjct: 196 DGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHA 255

Query: 201 YGRA-RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENC 258
           + RA   G     V +  KE+    +VTL NT++     VG    A E F + ++     
Sbjct: 256 FCRAGNVGMACELVAKMEKERVTPNAVTL-NTIVGGLCWVGRVGAALEFFREKRTVWPEA 314

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           + ++ T+S+++        V  A  +F+EM++ G  P+  +  ++I    +A R DD
Sbjct: 315 RGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDD 371



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 3/170 (1%)

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           D    + + + A    P+   +N LLD + +A     +  ++  M D  + PN  TY  L
Sbjct: 119 DAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGIL 178

Query: 198 LRAYGRARYGEDTLSVYREMK--EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED-MKS 254
           ++   +A    D LSV   M   E  +   V + N ++      G   +A +  E+ M+S
Sbjct: 179 VKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRS 238

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
              C P++ T++ +       G V  A  +  +M +    PN   L +++
Sbjct: 239 VHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIV 288


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 145/296 (48%), Gaps = 25/296 (8%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +G+ + A  + +R + +   ++PN   ++ LI  Y      D   ++YE M   GV P++
Sbjct: 235 SGDADAALEVVERMKADG--VEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDV 292

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T + L+D + R  +  +   +++EM   G++PN  TY +L+ +  +AR G ++L +  E
Sbjct: 293 VTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGE 352

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR- 275
           M  +G+ + + +Y  L+      G  +EA ++    + S+N  P+  T++ ++    CR 
Sbjct: 353 MVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQ-SDNITPNFVTYTVLVD-AHCRA 410

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ------CYGKAQRTDDVVRALNRLPELGIT 329
           G +  AE +  +M E    PN+   +S+I       C GKA    D +R   ++ + GI 
Sbjct: 411 GNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAA---DYMR---KMKDSGIA 464

Query: 330 PDDRFCGCLLNVMTQTPKEELG------KLVECVEKSNSKLGYVVKLLLEEQDIEG 379
           P+    G L++   +   +E         L E VE +N  +  +V  L +  +IEG
Sbjct: 465 PNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEG 520



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 1/220 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           RN     D   ++T+I      G     L + +EMK   +KPN+ITY  L+  +  A   
Sbjct: 599 RNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVV 658

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + K +  EM   G +P   T+  +L+A   +R  +  L ++  M   G+   +T+YNTL
Sbjct: 659 KKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTL 718

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           + +    G    A  + ++M  +    PD+ TF+++I        +  A A++ +ML  G
Sbjct: 719 VHVLCCHGMARNATVVLDEML-TRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQG 777

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             PN+    +L+     A R  +    L+ + ++G+ P++
Sbjct: 778 LSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNN 817



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 1/204 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+ LI  +  + + D    +Y +M   G+ PN+ T+N LL  +  A R  +  T+ 
Sbjct: 746 DTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVL 805

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M   GL PN  TY  L+  Y +     + L +Y EM  KG     + YN+L++  A  
Sbjct: 806 SDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKA 865

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A E+F +MK        S T+  ++   S      E   +  +M E GF+P+   
Sbjct: 866 GMMNQAKELFSEMK-RRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGT 924

Query: 300 LTSLIQCYGKAQRTDDVVRALNRL 323
           ++S+ + + +   T +  R L  L
Sbjct: 925 ISSMSRAFSRPGMTGEARRLLKTL 948



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 118/271 (43%), Gaps = 40/271 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G +E A  +   A+++   I PN   ++ L+  +  AGN DG   V  +M+   V PN
Sbjct: 374 KEGKIEEAKDVLRHAQSDN--ITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPN 431

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++T++++++ + +     +     ++M D+G++PN  TY +L+  + + +  E  L VYR
Sbjct: 432 VVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYR 491

Query: 216 -----------------------------------EMKEKGMQLSVTLYNTLLAMCADVG 240
                                              +M E+G+ L    Y TL+      G
Sbjct: 492 DMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTG 551

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
               AF++ +++   +N  PD+  ++  I      GK SEA++   EM   G EP+    
Sbjct: 552 NMPAAFKVGQELM-EKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATY 610

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++I    +  +T   ++ L  +    I P+
Sbjct: 611 NTMIAARCREGKTSKALKLLKEMKRNSIKPN 641



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+  AF +      +    D   ++  I    T G F    +  +EM+  G++P+  
Sbjct: 549 KTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQA 608

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++    R  +  +   + KEM  N + PN  TY +L+     A   +    +  EM
Sbjct: 609 TYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEM 668

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   +   +  +L  C+     D   EI E M  +     D   +++++ +  C G 
Sbjct: 669 ASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGA-GLHADITVYNTLVHVLCCHGM 727

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              A  + +EML  G  P+     +LI  + K+   D+      ++   G++P+
Sbjct: 728 ARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPN 781



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 7/235 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GN+E A  L+         +D   ++TL+      GN      V +E+    + P+ + Y
Sbjct: 516 GNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVY 575

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N  ++ +    +  + K+  KEM + GL P+  TY +++ A  R       L + +EMK 
Sbjct: 576 NVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKR 635

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             ++ ++  Y TL+    + G   +A  +  +M S+    P S T   ++  CS   +  
Sbjct: 636 NSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASA-GFAPTSLTHQRVLQACSGSRRPD 694

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQ---CYGKAQRTDDVVRALNRLPELGITPD 331
               +   M+ AG   ++ V  +L+    C+G A+    V   L+ +   GI PD
Sbjct: 695 VILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVV---LDEMLTRGIAPD 746



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 1/203 (0%)

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           D  L ++E M   G+  ++  YN L+  +           +  EM   G++P+  T+ +L
Sbjct: 694 DVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNAL 753

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           +  + ++ + ++  ++Y +M  +G+  ++  +NTLL      G   EA  +  DMK    
Sbjct: 754 ILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKV-G 812

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            +P++ T+  ++T  + +    EA  ++ EM+  GF P      SL+  + KA   +   
Sbjct: 813 LEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAK 872

Query: 318 RALNRLPELGITPDDRFCGCLLN 340
              + +   G+         LLN
Sbjct: 873 ELFSEMKRRGVLHTSSTYDILLN 895



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 112/243 (46%), Gaps = 7/243 (2%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  +Y    +E    +     +L+      GN +G   ++++M   G+  + + Y  L
Sbjct: 484 EAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTL 543

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKE 219
           +D + +         + +E+ +  LSP+   +N + + L   G+     +  S  +EM+ 
Sbjct: 544 MDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKF---SEAKSFLKEMRN 600

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++     YNT++A     G T +A ++ ++MK + + +P+  T+++++      G V 
Sbjct: 601 TGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRN-SIKPNLITYTTLVVGLLEAGVVK 659

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           +A+ + NEM  AGF P       ++Q    ++R D ++     +   G+  D      L+
Sbjct: 660 KAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLV 719

Query: 340 NVM 342
           +V+
Sbjct: 720 HVL 722



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 89/193 (46%), Gaps = 1/193 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++ +++ AF +Y +  ++    +   F+TL+    +AG       V  +MK +G++PN +
Sbjct: 759 KSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNL 818

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+    +     +   +Y EM   G  P  +TY SL+  + +A        ++ EM
Sbjct: 819 TYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEM 878

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K +G+  + + Y+ LL   + +    E   + +DMK     +P   T SSM    S  G 
Sbjct: 879 KRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKEL-GFKPSKGTISSMSRAFSRPGM 937

Query: 278 VSEAEAMFNEMLE 290
             EA  +   + +
Sbjct: 938 TGEARRLLKTLFK 950



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
            WN   +L+  Y + +     L+V   M  +G+ L V  YN+L+A     G  D A E+ 
Sbjct: 189 GWN---ALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVV 245

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           E MK ++  +P+  T++++I    C+GK + EA +++  M+ +G  P++  L++L+    
Sbjct: 246 ERMK-ADGVEPNVVTYTALIGE-YCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLC 303

Query: 309 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGY 366
           +  +  +       + ++G+ P+      L++ + +  +  E LG L E V +     G 
Sbjct: 304 RDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSR-----GV 358

Query: 367 VVKLLL 372
           V+ L++
Sbjct: 359 VMDLVM 364


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 14/255 (5%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           GL  +  TY  +++A+ R+R       VY EM+ KG +L +  YN LL   A  G  D+A
Sbjct: 123 GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQA 182

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           F++FEDMK  ++C PD++T++ +I +    G+ S+  + F+EM+  G   NL    ++I+
Sbjct: 183 FQVFEDMK-QKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIE 241

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEELGKLVECVEK--SNS 362
             GK +  D V+  L+++ E    P+       L+++ T+     L ++++   +  + S
Sbjct: 242 ALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRS 301

Query: 363 KLGYVVKLLLEEQDIEGDFKKEATELF----NSISKDVKKAYCNCLIDLCVNLNLLENAC 418
              Y+VK L      +     EA  +F    NS  K  + A+ + L  LC     LE A 
Sbjct: 302 IYSYLVKSL-----CKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLE-AI 355

Query: 419 KLLELGLTLEVYTDI 433
            LL +     + TD+
Sbjct: 356 DLLHMMPEKGIVTDV 370



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 125/263 (47%), Gaps = 37/263 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+   A  ++ R  N   + D +AF +++++   A      +++   M   G+  ++ 
Sbjct: 312 KSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVG 371

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +   +G+ K+   +  ++ +M  NG+ P+  TY  ++ +YGR              
Sbjct: 372 MYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR-------------- 417

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
                                VG  D+A E+FE M++S +C+PD  T++S+I      G 
Sbjct: 418 ---------------------VGLVDKASELFEVMEAS-SCKPDVVTYNSLINCLGKHGD 455

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +F EM E G++P++F  + LI+C+GK+ + +      + +   G TP+      
Sbjct: 456 LDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNI 515

Query: 338 LLNVMTQTPK-EELGKLVECVEK 359
           LL+ + +  K EE  KL E +++
Sbjct: 516 LLDCLERRGKTEEAHKLYETMKQ 538



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 1/159 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+D+ +      D   ++ +I  YG  G  D    ++E M+A   KP+++TYN+L++ +G
Sbjct: 392 LFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLG 451

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     +   ++KEM + G  P+  TY+ L+  +G++   E   S++ EM  +G   ++ 
Sbjct: 452 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 511

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            YN LL      G T+EA +++E MK  +   PDS T+S
Sbjct: 512 TYNILLDCLERRGKTEEAHKLYETMK-QQGLIPDSITYS 549



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 1/172 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           N++++MK  G+ P++ TYN ++ + GR     +   +++ M  +   P+  TY SL+   
Sbjct: 391 NLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCL 450

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           G+    ++   +++EM+EKG    V  Y+ L+         + A  +F++M  SE C P+
Sbjct: 451 GKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEM-ISEGCTPN 509

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
             T++ ++     RGK  EA  ++  M + G  P+    + L +   ++QRT
Sbjct: 510 IVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQRT 561



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 6/235 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+  V   F +Y+  R + +++D  A++ L+     AG  D    V+E+MK     P+  
Sbjct: 140 RSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAY 199

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+   G+A R  +  + + EM   G   N   + +++ A G+ +  +  + V  +M
Sbjct: 200 TYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKM 259

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-G 276
            E   Q +   Y+  L + A  G      E+ +      N    S+   S+     C+ G
Sbjct: 260 VENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSL-----CKSG 314

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SEA  +F  M  +  + +     S+++    A++T + +  L+ +PE GI  D
Sbjct: 315 HASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTD 369



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  L++       + D   +++LI   G  G+ D    +++EM+  G  P++ 
Sbjct: 417 RVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVF 476

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G++ +     +++ EM   G +PN  TY  LL    R    E+   +Y  M
Sbjct: 477 TYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETM 536

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y+ L
Sbjct: 537 KQQGLIPDSITYSIL 551



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 59/108 (54%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ A  L+   + + +  D   +S LI+ +G +   +   ++++EM + G  PN++
Sbjct: 452 KHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIV 511

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           TYN LLD + R  +  +   +Y+ M   GL P+  TY+ L R   R++
Sbjct: 512 TYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQ 559


>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN ++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++   
Sbjct: 240 NLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAY 299

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           + V   +I  + K ++  +VV    ++  LG  PD      +LN
Sbjct: 355 ITVFERMIDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVISLVLN 398



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +   G++P+   Y S++  +G+A+   +  S+  EM+E G+      Y+TLL M  + 
Sbjct: 68  SRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +        EA+ +F  M + G EPN+  
Sbjct: 128 QKFLEALSVFAEMREIK-CLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 122/267 (45%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G+ P+++ Y
Sbjct: 23  GLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRAGITPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N++++  G+AK   + +++  EM + G+ P+  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  ++ + +  T+++M+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPNAITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVEID 288



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +D LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K +    PD   ++SMI +        EA ++ +EM EAG  P+    ++L
Sbjct: 62  KAISIFSRLKRA-GITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + Q+  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQ 161



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PNA  +ST+I ++G  G  D    +++++++ GV+ + + Y  ++    RA      K
Sbjct: 250 IEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAK 309

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 310 RLLHELKRPDNIPR-DTAIHILAGAGRI---EEATWVFRQAIDAGEVKDITVFERMIDLF 365

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+FE M+      PDS   S    + +  GK+ E   A  M+ +M + G
Sbjct: 366 SKYKKYPNVVEVFEKMRGL-GYFPDSNVIS---LVLNAYGKLHEFDXANDMYMDMQDEG 420


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 3/233 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+VE A  L +   +     D   ++TLI LY   G     L + + M+  GV P+++
Sbjct: 209 KSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIV 268

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+    R  R  +   +++E+  NG +PN  TY +L+  Y R    E+ L +   M
Sbjct: 269 TYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVM 326

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+   V  YN++L    + G   +A  +  +M S    +PD+ T +++I      G 
Sbjct: 327 EVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEM-SERKVEPDNVTCNTLINAYCKIGD 385

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +  A  +  +MLEAG +P+ F   +LI  + K    D     L  + + G +P
Sbjct: 386 MGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSP 438



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 7/215 (3%)

Query: 120 DPNA----FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           DP++     S L+  Y  +      + V+E M+  G KP++     LL+++ +A+    V
Sbjct: 122 DPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMV 181

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             +YK+M   G+ PN + +  L+ A  ++   E    +  EM+ + +   +  YNTL+++
Sbjct: 182 WKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISL 241

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G   EA  I +D        PD  T++S+I      G++ EA  +F E+   G  P
Sbjct: 242 YCKKGMHYEALGI-QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATP 298

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           N    T+LI  Y +    ++ +R    +   G+ P
Sbjct: 299 NHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHP 333



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 105/237 (44%), Gaps = 5/237 (2%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  +++  R   ++   +A + L+     A   +    VY++M  +GV PN+  +N L+ 
Sbjct: 146 AIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIH 205

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              ++    + + +  EM    + P+  TY +L+  Y +     + L +   M+  G+  
Sbjct: 206 ACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSP 265

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            +  YN+L+      G   EA  +F ++  +    P+  T++++I    CR    E    
Sbjct: 266 DIVTYNSLIYGFCREGRMREALRLFREINGA---TPNHVTYTTLID-GYCRVNDLEEALR 321

Query: 285 FNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             E++E  G  P +    S+++   +  +  D  R LN + E  + PD+  C  L+N
Sbjct: 322 LREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLIN 378



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  L +     K   D    +TLI  Y   G+    + V ++M   G+KP+  T+
Sbjct: 349 GKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTF 408

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+    +       K    EM D G SP+++TY+ L+ +Y      E  + +  E+  
Sbjct: 409 KALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSR 468

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG+ + +++Y  L+     +   + A  IF  M+  +  + DS  ++S+       GK  
Sbjct: 469 KGLFVDISVYRALIRRLCKIDKIESAERIFTLMQ-GKGMKGDSVVYTSLAYAYFKAGKAI 527

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
            A  M +EM     +  L +   + +C+  +   D  +  L
Sbjct: 528 AASDMLDEM----DKRRLMITLKIYRCFSASYAGDGSILGL 564



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 38/231 (16%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TLI  Y    + +  L + E M+  G+ P ++TYN++L  +    +      +
Sbjct: 298 PNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRL 357

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM++  + P+  T  +L+ AY +       + V ++M E G+                
Sbjct: 358 LNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGL---------------- 401

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                               +PD +TF ++I       +V  A+    EML+AGF P+  
Sbjct: 402 --------------------KPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYS 441

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             + L+  Y      + V+R  + L   G+  D      L+  + +  K E
Sbjct: 442 TYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIE 492



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 4/228 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  ++E A  L +    E        ++++++     G       +  EM    V+P+ +
Sbjct: 312 RVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNV 371

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N L++   +         + K+M + GL P+  T+ +L+  + +    +       EM
Sbjct: 372 TCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEM 431

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G   S + Y+ L+    D     EA     D  S +    D   + ++I       K
Sbjct: 432 LDAGFSPSYSTYSWLVDSYYDQD-NKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDK 490

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNR 322
           +  AE +F  M   G + +  V TSL   Y   GKA    D++  +++
Sbjct: 491 IESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDK 538


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 142/301 (47%), Gaps = 7/301 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  V++A   +  A   +   D   F+T+I      G      +V +++KA G+ P++ T
Sbjct: 169 AKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVAT 228

Query: 159 YNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           YN+L+D     G A   + V  + KEM + G+SP   T+  L+  Y +       + V+ 
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFE 288

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK++G+  SV  YN+L++     G  +E  ++ E+M+      P+  TF  ++     +
Sbjct: 289 EMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL-GLSPNEITFGCVLKGFCKK 347

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G +++A    + M E   EP++ +   LI  Y +  + +D +     + + GI+P+    
Sbjct: 348 GMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTY 407

Query: 336 GCLLNVMTQTP--KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
            CL+   +++   +   G L E  EK          +L+     +G+ +K A +L + +S
Sbjct: 408 NCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRK-AVKLLDEMS 466

Query: 394 K 394
           +
Sbjct: 467 E 467



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 9/218 (4%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P A  F  LI  Y    N    + V+EEMK  G+  +++TYN+L+  +    +  +  
Sbjct: 260 ISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGV 319

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM D GLSPN  T+  +L+ + +     D       M E+ ++  V +YN L+ + 
Sbjct: 320 KLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVY 379

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             +G  ++A  + E M + +   P+  T++ +IT  S  G    A  + +EM E G E +
Sbjct: 380 RRLGKMEDAMAVKEAM-AKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEAD 438

Query: 297 LF---VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +    VL   + C G+ ++    V+ L+ + E+G+ P+
Sbjct: 439 VVTYNVLIGALCCKGEVRKA---VKLLDEMSEVGLEPN 473



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 110/268 (41%), Gaps = 26/268 (9%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G VE    L +    E   + PN   F  ++K +   G      +  + M    V+P+++
Sbjct: 313 GKVEEGVKLMEEM--EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 370

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+D   R  +      + + M   G+SPN  TY  L+  + R+        +  EM
Sbjct: 371 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG++  V  YN L+      G   +A ++ ++M S    +P+  T++++I     +G 
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGN 489

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR--------------- 322
           +  A  +   M +     N+      I+ + +  + D+    LN                
Sbjct: 490 IKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYET 549

Query: 323 ----LPELGITPDDRFCGCLLNVMTQTP 346
               + E G TPD R  GC ++  ++ P
Sbjct: 550 IKEGMMEKGYTPDIR--GCTVSQASENP 575



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 23/203 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R G +E A  + +     K  I PN   ++ LI  +  +G++     + +EMK  G++ +
Sbjct: 381 RLGKMEDAMAVKEAM--AKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEAD 438

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++TYN L+  +       +   +  EM++ GL PN  TY ++++ +      +    +  
Sbjct: 439 VVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRT 498

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSC 274
            M++   + +V  YN  +     +G  DEA ++  +M   + C  P+  T+         
Sbjct: 499 RMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEML--DKCLVPNGITY--------- 547

Query: 275 RGKVSEAEAMFNEMLEAGFEPNL 297
                  E +   M+E G+ P++
Sbjct: 548 -------ETIKEGMMEKGYTPDI 563



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 12/194 (6%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGED 209
           +P+  + N LL  +  AKR    +  ++      +SP+   +NT  S L   G+ R   D
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ----PDSWTF 265
              V +++K  G+  SV  YN+L+      G     + +  DM   E  +    P + TF
Sbjct: 213 ---VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV--DMLLKEMVEAGISPTAVTF 267

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
             +I         + A  +F EM + G   ++    SLI       + ++ V+ +  + +
Sbjct: 268 GVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMED 327

Query: 326 LGITPDDRFCGCLL 339
           LG++P++   GC+L
Sbjct: 328 LGLSPNEITFGCVL 341



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 6/151 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R+G+   A GL D  + +    D   ++ LI      G     + + +EM  +G++PN 
Sbjct: 415 SRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNH 474

Query: 157 ITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           +TYN ++      G  K  ++++T  ++         +N +       G+     D L+ 
Sbjct: 475 LTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLN- 533

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
             EM +K +  +   Y T+     + GYT +
Sbjct: 534 --EMLDKCLVPNGITYETIKEGMMEKGYTPD 562


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 1/212 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN   A  ++ R + +  +     ++ LI LYG  G     L V+ EM +   KPN+ 
Sbjct: 244 KGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNIC 303

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R     + + ++++M + GL P+  +Y +L+ AY RA +      ++  M
Sbjct: 304 TYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLM 363

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +     YN L+      G+ ++A  +FEDMK      P   +   +++  S  G 
Sbjct: 364 QHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRV-GITPTMKSHMVLLSAFSKTGN 422

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           VS+ E + N+M ++G + + FVL S++  YG+
Sbjct: 423 VSKCEDILNQMCKSGLKLDTFVLNSMLNLYGR 454



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 3/230 (1%)

Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R  PN   ++ LIK Y  +G  +    V+ EMK  G+  + + YN+ ++ + +   P + 
Sbjct: 192 RCIPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKA 251

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + I+  M  +G  P+  TY  L+  YG+       L V+ EM     + ++  Y  L+  
Sbjct: 252 EEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNA 311

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            A  G  ++A E+FE M+ +   +PD +++++++   S  G    A  +F+ M   G EP
Sbjct: 312 FAREGLCEKAEEVFEQMQEA-GLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEP 370

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           +      L+  YG+A   +D       +  +GITP  +    LL+  ++T
Sbjct: 371 DRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKT 420



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 122/262 (46%), Gaps = 9/262 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G +E A  ++   +N         +++ I      GN +    ++  MK  G KP+  T
Sbjct: 210 SGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTET 269

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L++  G+  + +    ++ EM  +   PN  TY +L+ A+ R    E    V+ +M+
Sbjct: 270 YTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQ 329

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E G++  V  YN L+   +  G+   A EIF  M+    C+PD  +++ ++      G +
Sbjct: 330 EAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHM-GCEPDRASYNILVDAYGRAGFL 388

Query: 279 SEAEAMFNEMLEAGFEPNL---FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           ++AEA+F +M   G  P +    VL S     G   + +D+   LN++ + G+  D    
Sbjct: 389 NDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDI---LNQMCKSGLKLDTFVL 445

Query: 336 GCLLNVMTQTPKEELGKLVECV 357
             +LN+  +    + GK+ E +
Sbjct: 446 NSMLNLYGRLG--QFGKMEEVL 465



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 1/179 (0%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           K ++I YN L+D  G+     + ++ Y ++ +    PN +TYA L++AY  +   E   +
Sbjct: 159 KQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLEKAEA 218

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           V+ EMK  G+  S  +YN+ +      G  ++A EIF  MK  + C+P + T++ +I + 
Sbjct: 219 VFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMK-RDGCKPSTETYTMLINLY 277

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              GK   A  +FNEML    +PN+   T+L+  + +    +       ++ E G+ PD
Sbjct: 278 GKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPD 336



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 92/189 (48%), Gaps = 1/189 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G  E A  ++++ +      D  +++ L++ Y  AG   G   ++  M+ +G +P+ 
Sbjct: 313 AREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDR 372

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN L+D  GRA      + ++++M   G++P   ++  LL A+ +         +  +
Sbjct: 373 ASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQ 432

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G++L   + N++L +   +G   +  E+   M++  +C+ D  T++ +I      G
Sbjct: 433 MCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENG-SCEADISTYNILINRYGQAG 491

Query: 277 KVSEAEAMF 285
            + + E +F
Sbjct: 492 FIDKMEGLF 500


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 96/178 (53%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P  +TYN+L+  + +A+R  +   + +EM  +G  P+  TY +L+  + +++  +D L V
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + ++  +G +  V  Y+ L+      G   EA ++F  M  S +C P++ T++S+I+   
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             GK+ EA  +   M E G  P++   T+L+  + K  R DD    LN++   G+TP+
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPN 229



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +++LI  +   G  D  +N+ E M   G  P+++TY  L++   +  R      +
Sbjct: 158 PNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDL 217

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             +MT  GL+PN  T+ SL+    R     D + +  EM+ K    +V  YNT+L     
Sbjct: 218 LNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCR 277

Query: 239 VGYTDEAFE-IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           V   +EA + + E+M    +C P+  +F+ MI       + SEA  +  E       P++
Sbjct: 278 VNQLEEARKFMLEEM----DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDV 333

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            + T++I    + ++ D+  R   ++ E    P     GCL N +T
Sbjct: 334 VMYTTVIDVLCREKKVDEACRVYRKMLE---EP-----GCLPNSIT 371



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 103/213 (48%), Gaps = 4/213 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI  +  +   D  L V+E++ A G +P+++TY+ L+D + +  R  +   ++
Sbjct: 88  DIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLF 147

Query: 180 KEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             M  +G   PN  TY SL+  + R    ++ +++   M E G    V  Y TL+     
Sbjct: 148 GRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCK 207

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +   D+A+++   M + +   P+  TF+S++       ++S+A  +  EM      P ++
Sbjct: 208 LARLDDAYDLLNQM-TRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVY 266

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +++  Y +  + ++  + +  L E+   P+
Sbjct: 267 TYNTILDGYCRVNQLEEARKFM--LEEMDCPPN 297



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 8/215 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A  L +R        D   ++TL+  +      D   ++  +M   G+ PN++
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+D + R  R      I  EM     SP   TY ++L  Y R    E+       +
Sbjct: 232 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFM--L 289

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E     +V  +N ++     V  + EA E+ E+ +    C PD   ++++I +     K
Sbjct: 290 EEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR-RRRCNPDVVMYTTVIDVLCREKK 348

Query: 278 VSEAEAMFNEML-EAGFEPNLFVLTSL----IQCY 307
           V EA  ++ +ML E G  PN    ++     +QC+
Sbjct: 349 VDEACRVYRKMLEEPGCLPNSITYSTFDYWPLQCW 383



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 90/190 (47%), Gaps = 2/190 (1%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           ++ EEM   G  P++ TY  L+    ++K+      +++++   G  P+  TY+ L+   
Sbjct: 75  DLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGL 134

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTL-YNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
            +    ++ + ++  M + G  +  T+ YN+L++    +G  DEA  + E M  + +  P
Sbjct: 135 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS-SP 193

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  T+++++       ++ +A  + N+M   G  PN+   TSL+    +  R  D V  L
Sbjct: 194 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHIL 253

Query: 321 NRLPELGITP 330
             +     +P
Sbjct: 254 GEMRRKSCSP 263



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 112/246 (45%), Gaps = 8/246 (3%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLL 163
           A  ++++     +R D   +S LI      G     ++++  M K+    PN +TYN+L+
Sbjct: 108 ALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 167

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
               R  +  +   + + M + G SP+  TY +L+  + +    +D   +  +M  KG+ 
Sbjct: 168 SGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 227

Query: 224 LSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
            +V  + +L+  +C +   +D A  I  +M+  ++C P  +T+++++    CR  V++ E
Sbjct: 228 PNVVTFTSLMDGLCRENRLSD-AVHILGEMR-RKSCSPTVYTYNTILDG-YCR--VNQLE 282

Query: 283 AMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
                ML E    PN+     +I+   K  R+ + +  +         PD      +++V
Sbjct: 283 EARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDV 342

Query: 342 MTQTPK 347
           + +  K
Sbjct: 343 LCREKK 348



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           P + T++S+I+      + SEA  +  EM+ +G  P++F  T+LI  + K++++DD +R 
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
             +L   G  PD     CL++ + +      G+L E ++
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKE-----GRLKEAID 145


>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 426

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   + +  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDEMRGLGYFPDSNVIALVLN 398



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++P+  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVENKKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+      Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  P+    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 10/160 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +           + +  Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                 I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++ E
Sbjct: 321 IPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDE 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 381 MRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           origanoides]
          Length = 408

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 242

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 243 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 302

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 303 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGE 357

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 358 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLN 404



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 TSYSTLLXMYVENKKFLEALSVFSEMREIK-CLLDLXTCNIMIDVYGQLGMAKEADKLFW 179

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 69  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLX 128

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 129 MYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 188

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 189 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 248

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 249 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 307

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 308 AGLVAHAKRLLHELKRPDNIPRD 330


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 1/224 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ A   +D    +   +D   + TLI      G       + +EM+   VKPN++ Y
Sbjct: 168 GEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIY 227

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++D+  + +   + + +Y ++ D G+ P+  TY SL+R + R     +   +  EM  
Sbjct: 228 NMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVN 287

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           K +  +V  +N L+      G   EA  +F  M      QPD  TF+++I+     G V 
Sbjct: 288 KNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQ-QPDIVTFNTLISGHCLHGNVL 346

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           EA  +F+ + E G  P+++  T LI  Y K +R D+ V   N +
Sbjct: 347 EARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEM 390



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 102/215 (47%), Gaps = 7/215 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV  A  L+D         D  +++ LI  Y      D  ++++ EM+   +  +++ Y
Sbjct: 343 GNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLY 402

Query: 160 NNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++L+D +   GR    W+   ++  + ++G  PN  TY  L+ A+ + +  +  + +++ 
Sbjct: 403 SSLIDGLCKSGRISYAWE---LFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKL 459

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  KG+  +V  YN L+          EA  +   M+ S+N  PDS T++S+       G
Sbjct: 460 MCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQ-SKNLAPDSITYNSLFDGLCKSG 518

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           ++S+A  +F  M   G   ++     L+  + KAQ
Sbjct: 519 RISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQ 553



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/232 (19%), Positives = 104/232 (44%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  AF +        ++ +    +T++K     G     ++ ++ + A G+  + + Y
Sbjct: 133 GEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCY 192

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L++ + +  R      + +EM    + PN   Y  ++ ++ +         +Y ++ +
Sbjct: 193 GTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVD 252

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G+   +  Y +L+      G   E  ++  +M  ++N  P+ +TF+ +I     +GK+ 
Sbjct: 253 MGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEM-VNKNINPNVYTFNVLIDAFCRKGKMI 311

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA+ MFN M++ G +P++    +LI  +       +  +  + + E GI PD
Sbjct: 312 EAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPD 363



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G +  A+ L+    N+    +   ++ LI  +    + D  + +++ M   G+ P ++
Sbjct: 411 KSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVL 470

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++   ++KR  +   +   M    L+P+  TY SL     ++    D   +++ M
Sbjct: 471 TYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVM 530

Query: 218 KEKGMQLSVTLYNTLL-AMC 236
              G  + V  YN LL A C
Sbjct: 531 HVGGPPVDVATYNVLLDAFC 550



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 5/216 (2%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + P+ F  S  I  Y   G      +V   +   G +PN IT   ++  +       +  
Sbjct: 115 VTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAM 174

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 235
             +  +   G+  +   Y +L+    +     D   + +EM+ + ++ ++ +YN ++ + 
Sbjct: 175 DFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSF 234

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           C D   T +A +++  +       PD  T++S+I      G+  E + +  EM+     P
Sbjct: 235 CKD-ELTCKARDLYLKI-VDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINP 292

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           N++    LI  + +  +  +     N + + G  PD
Sbjct: 293 NVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPD 328


>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 426

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 237 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAIVLN 398



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +N  +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 63  AISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLT 122

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 123 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 242

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 243 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 301

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 302 AGLVAHAKRLLHELKRPDNIPRD 324



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 101/192 (52%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             + ++G +P+   Y +++  +G+A+   +  S+  EMK  G+  + T Y+TLL M  + 
Sbjct: 68  SRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN ++   G+AK   + +++ 
Sbjct: 43  DLVLYSNLIELSRKLCDYSKAISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLI 102

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 103 SEMKTAGVIPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 162

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 221

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SMI I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 222 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 281

Query: 325 ELGITPD 331
             G+  D
Sbjct: 282 SSGVEID 288



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 1/159 (0%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
            LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    +A
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             IF  +K+S    PD   +++MI +        EA ++ +EM  AG  PN    ++L+ 
Sbjct: 64  ISIFSRLKNS-GYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLT 122

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 123 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 356

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+    +    VY EM
Sbjct: 357 VFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAIVLNAYGKLHEFDKANDVYMEM 416

Query: 218 KEKG 221
           +E G
Sbjct: 417 QEVG 420


>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 426

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 237 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 398



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMKA GV PN  +Y+ LL 
Sbjct: 63  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLT 122

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 123 MYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 243 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYER 301

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 302 AGLVAHAKRLLHELKRPDNIPRD 324



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 JKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   GI  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGIEID 288



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFSEMREJK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 1/159 (0%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           GLSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    +A
Sbjct: 4   GLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             IF  +K S    PD   +++MI +        EA ++  EM  AG  PN    ++L+ 
Sbjct: 64  ISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLT 122

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            Y + ++  + +   + + EJ    D   C  +++V  Q
Sbjct: 123 MYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQ 161



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 301 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 356

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 357 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 416

Query: 218 KEKG 221
           +E G
Sbjct: 417 QEVG 420


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 171/390 (43%), Gaps = 45/390 (11%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYD---TRAGNVEMAFGLYDRARNEKWRIDPNAFS 125
           K G + ++Y ++  K    +K+   +     ++AGN + A  L +R  +E    D   +S
Sbjct: 464 KAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYS 523

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
            L+         +  L + ++M   G+K  +  Y  L+D M R  +    K +Y EMT +
Sbjct: 524 VLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSS 583

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G  P+  TY   + +Y +    ED   +  +M+ +G+   V  YN L+  C  +GY D A
Sbjct: 584 GHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRA 643

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-----EAEAMFN------------EM 288
           F   + M  + +C+P+ WT+  ++     +G ++     +   M+N             M
Sbjct: 644 FSTLKRMVGA-SCEPNYWTYCLLLKH-LLKGNLAYVRSVDTSGMWNLIELDITWQLLERM 701

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           ++ G  P +   +SLI  + KA R ++    L+ +   G++P++     L+     T   
Sbjct: 702 VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFF 761

Query: 349 E-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNC 403
           E     +  + EC  +   +     +LL+     EGDF+K            VK  +C+ 
Sbjct: 762 EKALSFVSIMSECGFQPQLE---SYRLLVVGLCNEGDFEK------------VKSLFCD- 805

Query: 404 LIDLCVNLNLLENACKLLELGLTLEVYTDI 433
           L++L  N +  E A K+L  GL    Y DI
Sbjct: 806 LLELGYNHD--EVAWKILNDGLLKAGYVDI 833



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 4/243 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  + ++  + K ++D   F  LI              +  E+ A G+ PN+ITY +++D
Sbjct: 296 ALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIID 355

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              ++ +      + K M  +G  PN  TY SL+    + +     +++  +M++ G+  
Sbjct: 356 GYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIP 415

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  Y TLL    D    D AF +FE M+ +   +PD   + +++T   C  K   AE  
Sbjct: 416 NVITYTTLLQGQCDEHDFDNAFRLFEMMEQN-GLKPDEHAY-AVLTDALC--KAGRAEEA 471

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           ++ ++  G        T+LI  + KA  TD     + R+ + G TPD      LL+ + +
Sbjct: 472 YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCK 531

Query: 345 TPK 347
             +
Sbjct: 532 QKR 534



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 47/257 (18%)

Query: 104 MAFGLYDRARNEKWRIDPNA-----------FSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           + +GL D+   E   +  NA           F+ LI  Y  A  FD  L +  +M +   
Sbjct: 249 LIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKC 308

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           K ++  +  L++++ +  R  + K +  E++ NGL PN  TY S++  Y ++        
Sbjct: 309 KLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKS-------- 360

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
                                      G  D A E+ + M   + CQP++WT++S++   
Sbjct: 361 ---------------------------GKVDIALEVLK-MMERDGCQPNAWTYNSLMYGL 392

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
               K+ +A A+  +M + G  PN+   T+L+Q        D+  R    + + G+ PD+
Sbjct: 393 VKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDE 452

Query: 333 RFCGCLLNVMTQTPKEE 349
                L + + +  + E
Sbjct: 453 HAYAVLTDALCKAGRAE 469



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 1/190 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           VY ++   G+ P+ +TYN ++ +  +          ++ + + GL P   T  +L+  Y 
Sbjct: 55  VYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYC 114

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           R         ++  M   G Q +   Y  L+    D     +A  +F  MK  + C P+ 
Sbjct: 115 RTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKR-DGCSPNV 173

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             F+ +I+     G+V +A  +F+ M + G  P++    ++I  Y K  R +D ++    
Sbjct: 174 RAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL 233

Query: 323 LPELGITPDD 332
           + + G  PDD
Sbjct: 234 MEKNGCHPDD 243



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 8/236 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A  V  A  L+   + +    +  AF+ LI     +G       +++ M   GV P+++T
Sbjct: 151 AKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMT 210

Query: 159 YNNLL---DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           YN ++     +GR     ++K +   M  NG  P+  TY +L+      +  E    +  
Sbjct: 211 YNAMIVGYSKLGRMNDALKIKEL---MEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNN 267

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            +KE      VT  N +   C    + D+A  +   M SS+ C+ D   F  +I     +
Sbjct: 268 AVKEGFTPTVVTFTNLINGYCMAEKF-DDALRMKNKMMSSK-CKLDLQVFGKLINSLIKK 325

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ EA+ + NE+   G  PN+   TS+I  Y K+ + D  +  L  +   G  P+
Sbjct: 326 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPN 381


>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 3/253 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  ++ R     +     +++TLI  Y   G  +  + +   M+  GV+P+ +T+
Sbjct: 328 GKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTF 387

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++   R  +  +   I+ EM  N + PN  TY +L+  Y +    E    ++ EM  
Sbjct: 388 NTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLR 447

Query: 220 KGMQLSVTLYNTL-LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            G++  +  YN L L +C + G T +A  + +++   EN  P+S TFS++IT    R   
Sbjct: 448 NGIKADILTYNALILGLCME-GRTKKAAYLVKEL-DRENLVPNSSTFSALITGQCVRKNS 505

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
             A  ++  M+ +G  PN      LI  + K +  D  V  +  + E  I PD      L
Sbjct: 506 ERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSEL 565

Query: 339 LNVMTQTPKEELG 351
              +  + KEEL 
Sbjct: 566 CRGLWLSGKEELA 578



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 141/363 (38%), Gaps = 22/363 (6%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P  F +L K Y         ++V+ +MK  G  P + + N  +      +R     T Y+
Sbjct: 244 PCVFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYR 303

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM    +SPN  T   ++ A+ +    E  + V++ M+  G   ++T YNTL+A   + G
Sbjct: 304 EMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCNKG 363

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             +   ++ + +      +PD  TF+++I      GK+ EA  +F+EM      PN    
Sbjct: 364 LLNSGMKL-KILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITY 422

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
            +LI  Y +   ++   R  + +   GI  D      L+             L  C+E  
Sbjct: 423 NTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALI-------------LGLCMEGR 469

Query: 361 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAY--------CNCLIDLCVNLN 412
             K  Y+VK L  E  +       A      + K+ ++A+          C  +      
Sbjct: 470 TKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKM 529

Query: 413 LLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGE 472
           L+   CK  +    +EV  ++  RS    S  L  L  G  L+        L K +E   
Sbjct: 530 LISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKEELALKLCKEMEMKH 589

Query: 473 EFP 475
             P
Sbjct: 590 LMP 592



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 55/126 (43%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ GN EM   L+D       + D   ++ LI      G       + +E+    + PN 
Sbjct: 430 SQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNS 489

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T++ L+      K   +   +YK M  +G  PN++T+  L+  + +    +  + V RE
Sbjct: 490 STFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVRE 549

Query: 217 MKEKGM 222
           M E+ +
Sbjct: 550 MSERSI 555


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 116/245 (47%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++   LY +   ++ R D  +F+ LIK + +       L+ + ++  +G+ P+++T+N L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTL 155

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L  +    R  +   ++ +M +    PN  T+ +L+    R     + +++   M E G+
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           Q +   Y T++     +G T  A ++   M+   +  P+   +S++I      G+ S+A+
Sbjct: 216 QPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            +F EM E G  P+LF   S+I  +  + R  D  + L  + E  I+PD      L+N  
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 343 TQTPK 347
            +  K
Sbjct: 336 VKEGK 340



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
           R G +  A  L DR   +  +     + T++      G+    L++  +M+ I  + PN+
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNV 255

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y+ ++D++ +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +E
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E+ +   V  YN L+      G   EA E++++M       P++ T+SSMI     + 
Sbjct: 316 MLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQN 374

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++  AE MF  M   G  PNL    +LI  Y  A+R DD +  L+ + E G+  D
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 47/261 (18%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +I P+   ++ LI  +   G F     +Y+EM   G+ PN ITY++++D   +  R    
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-- 233
           + ++  M   G SPN  T+ +L+  Y  A+  +D + +  EM E G+    T YNTL+  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 234 --------------------AMCADV-------------GYTDEAFEIFEDMKSSE---- 256
                                +C D+             G   +A E+F+ M+ S+    
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 257 ------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
                   +PD  T++ +I+     GK  EAE ++ EM   G  P+    +S+I    K 
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 311 QRTDDVVRALNRLPELGITPD 331
            R D+  +  + +     +P+
Sbjct: 560 SRLDEATQMFDSMGSKSFSPN 580



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 14/224 (6%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TLI  Y  A   D  + +  EM   G+  +  TYN L+              +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----------KGMQLSVT 227
            +EM  +GL P+  T  +LL         +D L +++ M++            G++  V 
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQ 512

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YN L++   + G   EA E++E+M       PD+ T+SSMI     + ++ EA  MF+ 
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPH-RGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M    F PN+   T+LI  Y KA R DD +     +   GI  +
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 1/169 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ LI      G F     +YEEM   G+ P+ ITY++++D + +  R  +   ++
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M     SPN  T+ +L+  Y +A   +D L ++ EM  +G+  +   Y TL+     V
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           G  + A +IF++M SS    PD+ T  +M+T    + ++  A AM  ++
Sbjct: 630 GNINGALDIFQEMISS-GVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 18/261 (6%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  A  L+ +      R +   F+TL+      G     + + + M   G++P  ITY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 162 LLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           ++D M +         + ++M + + + PN   Y++++ +  +     D  +++ EM+EK
Sbjct: 225 IVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+   +  YN+++      G   +A ++ ++M   +   PD  T++++I      GK  E
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK-ISPDVVTYNALINAFVKEGKFFE 343

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------D 332
           AE +++EML  G  PN    +S+I  + K  R D        +   G +P+        D
Sbjct: 344 AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 333 RFCGC--------LLNVMTQT 345
            +CG         LL+ MT+T
Sbjct: 404 GYCGAKRIDDGMELLHEMTET 424



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 16/252 (6%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV- 175
           D   ++TLI  +   G+ +  L++ +EM + G+ P+++T + LLD +   G+ K   ++ 
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 176 KTIYKEMTD-------NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
           K + K   D       NG+ P+  TY  L+          +   +Y EM  +G+      
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y++++         DEA ++F+ M  S++  P+  TF+++I      G+V +   +F EM
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PK 347
              G   N     +LI  + K    +  +     +   G+ PD      + N++T    K
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSK 664

Query: 348 EELGKLVECVEK 359
           EEL + V  +EK
Sbjct: 665 EELKRAVAMLEK 676



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D   ++ +  +   F+TLI  Y  AG  D  L ++ EM   G+  N ITY  L+    
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           +         I++EM  +G+ P+  T  ++L
Sbjct: 628 KVGNINGALDIFQEMISSGVYPDTITIRNML 658


>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           duartei]
          Length = 381

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 137 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 196

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 197 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMI 256

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 257 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQXIDAGE 311

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 312 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 358



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  G+     +   +
Sbjct: 72  PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 131

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +   
Sbjct: 132 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 191

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  
Sbjct: 192 TLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQI 250

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  ++I  Y +A       R L+ L      P D
Sbjct: 251 LFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 284



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 110/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K +G  P+++ YN +++  G+AK   + +++ 
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 63  GEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 181

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SM+ I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 182 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLR 241

Query: 325 ELGITPD 331
             G+  D
Sbjct: 242 SSGVEID 248



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 261 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQXIDAGEVKDIT 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 317 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 376

Query: 218 KEKG 221
           +E G
Sbjct: 377 QEVG 380


>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           microcephala]
          Length = 440

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 242

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 243 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMI 302

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 303 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 357

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 358 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 404



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNT 120

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 ASYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMKA GV PN  +Y+ LL 
Sbjct: 69  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLT 128

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 129 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 188

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 189 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 248

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 249 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYER 307

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 308 AGLVAHAKRLLHELKRPDNIPRD 330



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 29  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 88

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 89  NAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMRE 148

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 149 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 208

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 209 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTII 267

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   GI  D
Sbjct: 268 SIWGKVGKLDRAAMLFQKLRSSGIEID 294



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 307 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 363 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 422

Query: 218 KEKGMQLSVTLYNTLLAM 235
           +E G   S  ++  +L++
Sbjct: 423 QEVGCVFSDEVHFQMLSL 440


>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
           [Burroughsia fastigiata]
          Length = 348

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 120 KMGIEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 179

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G ++   L+ T++
Sbjct: 180 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMI 239

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 240 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 294

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 295 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 341



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R ++  +  D  A++T+I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 6   AISIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTLLT 65

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 66  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 125

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +L+R YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 126 NVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 185

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 186 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYER 244

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 245 AGLVAHAKRLLHELKRPDNIPRD 267



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 97/196 (49%), Gaps = 1/196 (0%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           ++   ++++  +K+ G  P+++ YN ++   G+AK   + +++  EM   G++PN  +Y+
Sbjct: 2   DYSKAISIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYS 61

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +LL  Y   +   + LSV+ EM+E    L +T  N ++ +   +G   EA ++F  M+  
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
              +P+  ++++++ +        EA  +F  M     E N+    S+I  YGK    + 
Sbjct: 122 -GIEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 180

Query: 316 VVRALNRLPELGITPD 331
               +  +   GI P+
Sbjct: 181 ANNLIQEMQSRGIEPN 196


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 151/339 (44%), Gaps = 30/339 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A  ++D  R    +    +F+TLI  Y  +GN +    +   M+   V P++ 
Sbjct: 244 KEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVF 303

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+D + +  +      ++KEM D GL PN  T+ +L+    +    +  L +Y++M
Sbjct: 304 TYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQM 363

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG++  + LYNTL+      GY  EA +   +M +     PD +T+++++      G 
Sbjct: 364 FTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEM-TKRGLIPDKFTYTTLLDGSCKEGD 422

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  M  EM++ G + +    T++I    +  +  D  R L  +   G+ PDD   G 
Sbjct: 423 LELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDD---GT 479

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT--ELFNSISKD 395
              VM    K           K + K+G+    LL+E   +G      T   L N + K 
Sbjct: 480 YTMVMDGFCK-----------KGDVKMGFK---LLKEMQSDGHIPGVITYNVLMNGLCKQ 525

Query: 396 VKKAYCNCLIDLCVNLN----------LLENACKLLELG 424
            +    + L++  +NL           LL+  CK  +LG
Sbjct: 526 GQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLG 564



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 17/226 (7%)

Query: 122 NAFSTLIKLYGTAGN---FDGCLNVYEEMKAIG---------VKPNM-ITYNN---LLDT 165
           + F+++++  GT  +   FD  ++VY E   +           K N+ I +N    LL+ 
Sbjct: 147 SVFASILETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLER 206

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
           M +   P      Y E+ D+G  PN  T+  L+    +    +D   ++ E+++ G+Q +
Sbjct: 207 MIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPT 266

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
              +NTL+      G  +E F +   M+      PD +T+S++I       ++ +A  +F
Sbjct: 267 AVSFNTLINGYCKSGNLEEGFRLKMVMEEFR-VFPDVFTYSALIDGLCKECQLEDANHLF 325

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EM + G  PN    T+LI    K  R D  +    ++   G+  D
Sbjct: 326 KEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKAD 371


>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           alba]
          Length = 419

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 242

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 243 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 302

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 303 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 357

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 358 VKDITVFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLN 404



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +   I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNT 120

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
           + Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 SSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 69  AIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLLT 128

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 129 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 188

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 189 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 248

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 249 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 307

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 308 AGLVAHAKRLLHELKRPDNIPRD 330


>gi|255661212|gb|ACU25775.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 426

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN ++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMHSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   ++  + K ++  +VV    ++  LG  PD      +LN
Sbjct: 352 VKDITVFERMVDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVIALVLN 398



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 1/213 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  G+     +   ++
Sbjct: 113 DTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLF 172

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YNT++ +    
Sbjct: 173 WSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKT 232

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              ++A  + ++M  S   +P++ T+S++I+I    GK+  A  +F ++  +G E +  +
Sbjct: 233 LEHEKANNLIQEM-HSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVL 291

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             ++I  Y +A       R L+ L      P D
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 324



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 121/267 (45%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G+ P+++ Y
Sbjct: 23  GLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYSKAISIFSRLKRSGIVPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N++++  G+AK   + +++  EM   G+ P+  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T+++M+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHSRGIEPNAITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVEID 288



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 96/188 (51%), Gaps = 1/188 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+  + 
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYSKAISIFSRLK 71

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G+ P+   Y S++  +G+A+   +  S+  EM+  G+      Y+TLL M  +     
Sbjct: 72  RSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVENQKFL 131

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +F +M+  + C  D  T + MI +        EA+ +F  M + G EPN+    +L
Sbjct: 132 EALSVFAEMREIK-CLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTL 190

Query: 304 IQCYGKAQ 311
           ++ YG A+
Sbjct: 191 LRVYGDAE 198



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + GLSP   TY++L+  +G+    +D LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERGLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   ++SMI +        EA ++ +EM   G  P+    ++L
Sbjct: 62  KAISIFSRLKRS-GIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + Q+  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 10/160 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +          ++    Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
               T I +   AG  +    V+ +    G   ++  +  ++D   + K+   V  ++++
Sbjct: 321 IPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMVDLFSKYKKYPNVVEVFEK 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           M   G  P+ N  A +L AYG+    +    VY EM+++G
Sbjct: 381 MRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYLEMQDEG 420


>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           citrodora]
          Length = 435

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+ N  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 184 KMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 243

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 244 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 303

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++KS +N   D     + I I +  G++ EA  +F + ++AG 
Sbjct: 304 VAYERAGLVAHAKRLLHELKSPDNIPRD-----TAIHILAGAGRIEEATYVFRQAIDAGE 358

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  + V   +++  LG  PD      +LN
Sbjct: 359 VKDITVFERMIHLFSKYKKYANAVEVFDKMRGLGYFPDSNVIALVLN 405



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 2   GLFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 61

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  ++  EMK  G+  + 
Sbjct: 62  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNT 121

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 122 ASYSTLLTMYVENKKFIEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G E N+    +L++ YG A+
Sbjct: 181 GMRKMGIETNVVSYNTLLRVYGDAE 205



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 30  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 89

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + + +  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 90  NAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVFSEMRE 149

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 150 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIETNVVSYNTLLRVYGDAELFGE 209

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 210 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 268

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 269 SIWGKVGKLDRAAMLFQKLRSSGVEID 295



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 82/176 (46%), Gaps = 7/176 (3%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++G  G  D    +++++++ GV+ + + Y  ++    RA      K
Sbjct: 257 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAK 316

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 317 RLLHELKSPDNIPR-DTAIHILAGAGRI---EEATYVFRQAIDAGEVKDITVFERMIHLF 372

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +       A E+F+ M+      PDS   + ++       ++ +A  ++ EM E G
Sbjct: 373 SKYKKYANAVEVFDKMRGL-GYFPDSNVIALVLNAYGKLHELDKANDVYMEMQEVG 427


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 120/226 (53%), Gaps = 1/226 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T++  +   G+ D   + Y EM   G+ P+++TY++++  + +A+   +   + 
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVL 259

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ P+  TY S+L  Y  +   ++ +   ++M+  G++ +V  Y++L+      
Sbjct: 260 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKN 319

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G + EA +IF+ M +    +PD  T+ +++   + +G + E  A+ + M+  G +P+  V
Sbjct: 320 GRSTEARKIFDSM-TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 378

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
              LI  Y K ++ D  +   +++ + G+ P+    G +++V+ ++
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 154/343 (44%), Gaps = 11/343 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A+  Y    +     D   +S++I     A   D  + V   M   GV P+ +
Sbjct: 213 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 272

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN++L     + +P +     K+M  +G+ PN  TY+SL+    +     +   ++  M
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++  +  Y TLL   A  G   E   +  D+      QPD   F+ +I   + + K
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALL-DLMVRNGIQPDHHVFNILICAYAKQEK 391

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A  +F++M + G  PN+    ++I    K+   DD +    ++ + G+TP+      
Sbjct: 392 VDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTS 451

Query: 338 LLNVMTQTPK----EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
           L++ +    K    EEL  ++E +++           +++    EG    E+ +LF+ + 
Sbjct: 452 LIHGLCTCDKWDKAEEL--ILEMLDRGICLNTIFFNSIIDSHCKEGRV-IESEKLFDLMV 508

Query: 394 K-DVKKAYC--NCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433
           +  VK      N LID C     ++ A KLL   +++ V  DI
Sbjct: 509 RIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDI 551



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           RAG +++ F        + +R+D   F+ L+K L       D    V   M  +G  P++
Sbjct: 104 RAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDV 163

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRARYGEDTLSV 213
            +YNNLL  +    R  +   +   M D+   G  P+  +Y ++L  + +    +   S 
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y EM ++G+   V  Y++++A        D+A E+   M  +    PD  T++S++    
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYC 282

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G+  EA     +M   G EPN+   +SL+    K  R+ +  +  + + + G+ PD
Sbjct: 283 SSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 9/251 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  +  L+D       + D   ++TLI     AG  D    +   M ++GVKP+++
Sbjct: 493 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 552

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R  R      ++KEM  +G+SPN  TY  +L+     R       +Y  +
Sbjct: 553 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 612

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G QL ++ YN +L        TDEA  +F+++  ++  Q ++ TF+ MI      G+
Sbjct: 613 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD-LQLETRTFNIMIGALLKCGR 671

Query: 278 VSEAEAMFNEMLEAGFEPNL----FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           + EA+ +F      G  P++     +  +LI+  G  +  DD+  ++    E G + D R
Sbjct: 672 MDEAKDLFAAHSANGLVPDVRTYSLMAENLIE-QGSLEELDDLFLSME---ENGCSADSR 727

Query: 334 FCGCLLNVMTQ 344
               ++  + Q
Sbjct: 728 MLNSIVRKLLQ 738



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 116/247 (46%), Gaps = 1/247 (0%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           +Y  + G    A  ++D         D   + TL++ Y T G       + + M   G++
Sbjct: 314 NYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQ 373

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+   +N L+    + ++  Q   ++ +M  +GL+PN   Y +++    ++   +D +  
Sbjct: 374 PDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLY 433

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + +M ++G+  ++ +Y +L+         D+A E+  +M     C  ++  F+S+I    
Sbjct: 434 FEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL-NTIFFNSIIDSHC 492

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G+V E+E +F+ M+  G +P++    +LI     A + D+  + L  +  +G+ PD  
Sbjct: 493 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 552

Query: 334 FCGCLLN 340
             G L+N
Sbjct: 553 TYGTLIN 559



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 11/272 (4%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+++I  +   G       +++ M  IGVKP++ITYN L+D    A +  +   +   M 
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ P+  TY +L+  Y R    +D L++++EM   G+  ++  YN +L        T 
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTA 603

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E++  +  S   Q +  T++ ++          EA  MF  +     +        +
Sbjct: 604 AAKELYVSITKS-GTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 662

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECVEKSNS 362
           I    K  R D+           G+ PD R    +  N++ Q   EEL  L   +E++  
Sbjct: 663 IGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGC 722

Query: 363 K-----LGYVVKLLLEEQDIEGDFKKEATELF 389
                 L  +V+ LL+     GD  +  T LF
Sbjct: 723 SADSRMLNSIVRKLLQ----RGDITRAGTYLF 750



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 99/256 (38%), Gaps = 46/256 (17%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG---LSPNWNTYASLL 198
           +V++E+   G   ++   N  L  + R   P    + Y  M   G   ++P  +TYA L+
Sbjct: 41  HVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYAILI 99

Query: 199 ----RAYGRARYGEDTLS---------------------------------VYREMKEKG 221
               RA GR   G   L                                  V R M E G
Sbjct: 100 GCCCRA-GRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELG 158

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQPDSWTFSSMITICSCRGKVS 279
               V  YN LL    D   + EA E+   M         PD  ++++++      G   
Sbjct: 159 CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSD 218

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           +A + ++EML+ G  P++   +S+I    KAQ  D  +  LN + + G+ PD      +L
Sbjct: 219 KAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 278

Query: 340 N--VMTQTPKEELGKL 353
           +    +  PKE +G L
Sbjct: 279 HGYCSSGQPKEAIGTL 294


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNAFSTLIKLYGTAG--NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E+  + PN ++  I  +G       D    ++ E  A G+KPN +TYN LL+   R  R 
Sbjct: 420 EQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRL 479

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   I KEM  N  +P+  TY +L++   +     D L ++ EM+ KG  ++    N L
Sbjct: 480 IEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNIL 539

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
               A VG   +A   +  MK        S  + + I   S  G++ EA+A+  EM+  G
Sbjct: 540 ARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLA-IHCLSTAGEMEEAQALLYEMINKG 598

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + PNL    ++I+ + +  R DD    LN + E GI PD
Sbjct: 599 YSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPD 637



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 112/236 (47%), Gaps = 5/236 (2%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI--TYNNLLDT 165
           L  + + +   I  +   + +  YG +G F   L  +  MK +G +P +I   YN++L +
Sbjct: 238 LLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVS 297

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
           + + K+    + ++ +M +NG+S N  TY S+++ +      ED + +  +M +      
Sbjct: 298 LVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPD 357

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAM 284
           V  Y  +++        ++A+ + + M+ +  C+P+ +T++++I  +C+ R +  EA  +
Sbjct: 358 VVTYTIVISALCKRKMIEQAYGVLQKMREN-GCEPNIYTYNALIQGLCAVR-RPEEALEL 415

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              M + G  PN++  T L     K +R D      N     G+ P+      LLN
Sbjct: 416 VTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLN 471



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 112/251 (44%), Gaps = 42/251 (16%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYE-EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           ++P+A   ++ L   A N    L  ++   K  G   N   Y  ++D +GRAK   ++++
Sbjct: 181 LNPDAVVKVLNLQTDAQN---ALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQS 237

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLL-- 233
           + ++M   G     +   S + +YGR+   +++L  +  MKE G +  L  T YN++L  
Sbjct: 238 LLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVS 297

Query: 234 ---------------------AMCADVGYT------------DEAFEIFEDMKSSENCQP 260
                                  C ++ YT            ++A ++ +DM  + N  P
Sbjct: 298 LVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQN-NYAP 356

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  T++ +I+    R  + +A  +  +M E G EPN++   +LIQ     +R ++ +  +
Sbjct: 357 DVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELV 416

Query: 321 NRLPELGITPD 331
             + + G+ P+
Sbjct: 417 TLMEQGGVPPN 427



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 106/227 (46%), Gaps = 3/227 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++MA  L+ +  N     +   ++++I+ +      +  + + ++M      P+++TY  
Sbjct: 304 LDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTI 363

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++  + + K   Q   + ++M +NG  PN  TY +L++     R  E+ L +   M++ G
Sbjct: 364 VISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGG 423

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSE 280
           +  ++  Y  L      +   D A E+F +   +   +P+  T+++++    CRG ++ E
Sbjct: 424 VPPNIYTYTILTHGLCKLRRLDRAKEMFNE-ALARGLKPNRVTYNTLLN-GYCRGSRLIE 481

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           A  +  EM +    P+    T+LIQ   +  +  D +R  + +   G
Sbjct: 482 AMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKG 528



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 55/128 (42%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R GN + A   Y R ++  +    + +   I    TAG  +    +  EM   G  PN+ 
Sbjct: 545 RVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLT 604

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++    R  R      +   M +NG+ P+  +Y  L++ +      +D   +Y   
Sbjct: 605 TYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATA 664

Query: 218 KEKGMQLS 225
            E+G+ L+
Sbjct: 665 LERGVVLN 672



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 62/145 (42%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++D   N+ + ++ +  + L +     GN       Y  MK  G   +   Y   + 
Sbjct: 517 ALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIH 576

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +  A    + + +  EM + G SPN  TY ++++ + R    +D  ++   M E G+  
Sbjct: 577 CLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGP 636

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIF 249
               YN L+    + G T +A +++
Sbjct: 637 DTGSYNILIKEFHNQGRTQDADQLY 661


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A  L+D       R D   ++T+I      G       + ++M+  G +PN++
Sbjct: 180 KVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVV 239

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ ++D+  + +R  +   I+  M   G+SP+  TY SL++        ++  ++  EM
Sbjct: 240 TYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEM 299

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +   +   +  +N L+      G   EA  + + M +    +PD  T+SS++   S R +
Sbjct: 300 RSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTM-TEMGVEPDVVTYSSLMYGYSLRSE 358

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           V EA  +F+ M+  G +P++F    LI  Y K +R D+  +  N +   G+TP++
Sbjct: 359 VVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNN 413



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 116/233 (49%), Gaps = 7/233 (3%)

Query: 102 VEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           V++AF +   A+  K  + P    F+TLI      G F   + ++++M A G +P++ TY
Sbjct: 149 VDLAFSVL--AKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTY 206

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             +++ + +         + K+M + G  PN  TY++++ ++ + R   + L ++  MK 
Sbjct: 207 TTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKV 266

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKV 278
           KG+   +  YN+L+    +     EA  +  +M+S  N  PD  TF+ ++ TIC   GKV
Sbjct: 267 KGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSL-NIMPDIVTFNVLVDTICK-EGKV 324

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           SEA+ +   M E G EP++   +SL+  Y       +  +  + +   G  PD
Sbjct: 325 SEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPD 377



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 101/197 (51%), Gaps = 2/197 (1%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTY 194
           N D  L  +  M      P +I +  LL  + +  + +  V ++ K+M   GLSPN  T 
Sbjct: 77  NIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTL 136

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
           + L+  +   +  +   SV  ++ + G+Q ++  + TL+     VG   +A E+F+DM  
Sbjct: 137 SILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDM-V 195

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           +  C+PD +T++++I      G+ + A  +  +M EAG +PN+   +++I  + K +R +
Sbjct: 196 ARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVN 255

Query: 315 DVVRALNRLPELGITPD 331
           + +   + +   GI+PD
Sbjct: 256 EALDIFSYMKVKGISPD 272



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 109/235 (46%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A G+           D   +S+L+  Y           +++ M   G KP++ 
Sbjct: 320 KEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVF 379

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN L++   + KR  + K ++ EM   GL+PN  +Y +L+    +     +  ++++ M
Sbjct: 380 SYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNM 439

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   ++  Y+ LL      GY  +AF +F  M+S+ + +P+   ++ +I      G 
Sbjct: 440 HTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYS-KPNLVMYNILIDAMCKSGN 498

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           + +A  +F+E+   G +PN  + T++I    K    D+ + A   + E G  PD+
Sbjct: 499 LRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE 553



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 103/217 (47%), Gaps = 7/217 (3%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN +  S LI  +      D   +V  ++  +G++P ++T+  L++ + +  +  Q  
Sbjct: 129 LSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAM 188

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYNTLLA 234
            ++ +M   G  P+  TY +++   G  + GE   +  + ++M+E G Q +V  Y+T++ 
Sbjct: 189 ELFDDMVARGCRPDVYTYTTIIN--GLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIID 246

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                   +EA +IF  MK  +   PD +T++S+I       +  EA A+ NEM      
Sbjct: 247 SHRKDRRVNEALDIFSYMK-VKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIM 305

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           P++     L+    K  +  +    L  + E+G+ PD
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPD 342



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 86/164 (52%), Gaps = 1/164 (0%)

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           EM+++ + P+++T+N L+DT+ +  +  + + + K MT+ G+ P+  TY+SL+  Y    
Sbjct: 298 EMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRS 357

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
              +   ++  M  KG +  V  YN L+     V   DEA ++F +M   +   P++ ++
Sbjct: 358 EVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEM-IHQGLTPNNVSY 416

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           +++I      G + EA  +F  M   G  PNLF  + L+  + K
Sbjct: 417 NTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCK 460



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 106/236 (44%), Gaps = 1/236 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L +  R+     D   F+ L+      G       V + M  +GV+P+++TY++L+ 
Sbjct: 292 ASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMY 351

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                    + + ++  M   G  P+  +Y  L+  Y + +  ++   ++ EM  +G+  
Sbjct: 352 GYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTP 411

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   YNTL+     +G   EA  +F++M ++ N  P+ +T+S ++     +G   +A  +
Sbjct: 412 NNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNL-PNLFTYSILLDGFCKQGYFGKAFRL 470

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           F  M     +PNL +   LI    K+    D  +  + L   G+ P+ +    ++N
Sbjct: 471 FRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIIN 526



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 121 PNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F  S L+  +   G F     ++  M++   KPN++ YN L+D M ++      + +
Sbjct: 446 PNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKL 505

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           + E+   GL PN   Y +++    +    ++ L  +R M+E G       YN ++
Sbjct: 506 FSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVII 560


>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           micromera]
          Length = 434

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 242

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 243 KANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMI 302

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 303 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 357

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +V+   +++  LG  PD      +LN
Sbjct: 358 VKDITVFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSNVIAVVLN 404



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 60

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 TSYSTLLTMYXENKKFLEALSVFSEMREIK-CXLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 69  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 128

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 129 MYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 188

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 189 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 248

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 249 QEMQ-SRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 307

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 308 AGLVAHAKRLLHELKRPDNIPRD 330



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 80/167 (47%), Gaps = 1/167 (0%)

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++ EM    LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +  
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
                 +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN 
Sbjct: 62  KXCDYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
              ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 121 TSYSTLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQ 167



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           ++ EM+++ +      Y+TL+      G  D A    + M+  +    D   +S++I + 
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQ-VPGDLVLYSNLIELS 60

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
                 S+A ++F+ +  +GF P+L    ++I  +GKA+   +    ++ +   G+ P+ 
Sbjct: 61  RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 333 RFCGCLLNVMTQTPK 347
                LL +  +  K
Sbjct: 121 TSYSTLLTMYXENKK 135



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 307 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+ +  +    VY EM
Sbjct: 363 VFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 422

Query: 218 KEKG 221
           +E G
Sbjct: 423 QEVG 426


>gi|224138872|ref|XP_002326711.1| predicted protein [Populus trichocarpa]
 gi|222834033|gb|EEE72510.1| predicted protein [Populus trichocarpa]
          Length = 167

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 92/147 (62%), Gaps = 1/147 (0%)

Query: 308 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 366
           G+ + +  +V+  N   + G+  DDRFCGCLL+V + + + E++ K++ C++++N KL  
Sbjct: 11  GRLEESLTLVKVFNVAIDGGVKLDDRFCGCLLSVASLSDESEDVAKVLACLQQANPKLVA 70

Query: 367 VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426
           +VKL  +E+      K+E   + +  + + ++ +C CLID+C   +L   A +LL LG+ 
Sbjct: 71  LVKLFEDEETSFETLKEEFRAVVSDAAIETRRPFCKCLIDICRKRDLHGRAHELLYLGIL 130

Query: 427 LEVYTDIQSRSPTQWSLHLKSLSLGAA 453
             +Y D+  ++  +WSL+++SLS+GAA
Sbjct: 131 HGLYPDLHHKTVKEWSLNVRSLSVGAA 157


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 12/269 (4%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           +R++ + +S LI      G  +  + ++++M   G +PN++ Y+ ++D + R  +P + K
Sbjct: 358 YRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAK 417

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I   M  +G  PN  TY+SL++ + +    E+ + V+REM E G   +   Y+ L+   
Sbjct: 418 EILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGL 477

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML---EAGF 293
             VG   EA  ++  M +    +PD+  +SSMI      G +  A  +++EML   E   
Sbjct: 478 CGVGRVKEAMMVWSKMLTI-GIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKS 536

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
           +P++     L+      +     V  LN + + G  PD   C   LN +++         
Sbjct: 537 QPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKS------- 589

Query: 354 VECVEKSNSKLGYVVKLLLEEQDIEGDFK 382
            +  E+  S L  +V  LL+ Q + G  K
Sbjct: 590 -DSCEEGRSFLEELVARLLKRQRVSGACK 617



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 115/234 (49%), Gaps = 2/234 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A  L D  ++E     P  ++ LI      G+      + + M   G  PN +TYN 
Sbjct: 238 IDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNT 297

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+  +    +  +  ++ + M  +   PN  TY +L+    + R   D   +   M+E+G
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERG 357

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            +L+  +Y+ L++     G  +EA  +++ M + + C+P+   +S++I      GK +EA
Sbjct: 358 YRLNQHIYSVLISGLFKEGKAEEAMTLWKKM-AEKGCRPNIVVYSAVIDGLCREGKPNEA 416

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           + + N M+ +G  PN++  +SL++ + K   +++ ++    + E G + ++ FC
Sbjct: 417 KEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNE-FC 469



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 3/213 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TLI      G  D  +++ E M +    PN +TY  L++ + + +R      +
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARL 349

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
              M + G   N + Y+ L+    +    E+ ++++++M EKG + ++ +Y+ ++     
Sbjct: 350 LISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCR 409

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  +EA EI   M SS  C P+ +T+SS++      G   EA  ++ EM E G   N F
Sbjct: 410 EGKPNEAKEILNGMISS-GCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEF 468

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + LI       R  + +   +++  +GI PD
Sbjct: 469 CYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPD 501



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 93/209 (44%), Gaps = 2/209 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  E A  L+ +   +  R +   +S +I      G  +    +   M + G  PN+ 
Sbjct: 374 KEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVY 433

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+    +     +   +++EM + G S N   Y+ L+         ++ + V+ +M
Sbjct: 434 TYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKM 493

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQPDSWTFSSMITICSCR 275
              G++     Y++++     +G  D A +++ +M   E    QPD  T++ ++     +
Sbjct: 494 LTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQ 553

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
             VS A  + N ML+ G +P++    + +
Sbjct: 554 KDVSRAVDLLNCMLDRGCDPDVITCNTFL 582



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 121/286 (42%), Gaps = 11/286 (3%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTM 166
           L  R R E   I   +F  + + YG A   +  ++++  M      K ++ ++N++L+ +
Sbjct: 99  LLSRIRLENRVIIERSFIVVFRAYGKAHLPEKAVDLFHRMVDEFRCKRSVKSFNSVLNVI 158

Query: 167 ---GRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
              G   R  +    +     +  +SPN  ++  +++A  +  + +  + V+R M EK  
Sbjct: 159 INEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKC 218

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
                 Y TL+         DEA  + ++M+S E C P    ++ +I     +G +S   
Sbjct: 219 LPDGYTYCTLMDGLCKEERIDEAVLLLDEMQS-EGCSPSPVIYNVLIDGLCKKGDLSRVT 277

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            + + M   G  PN     +LI       + D  V  L R+      P+D   G L+N +
Sbjct: 278 KLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGL 337

Query: 343 TQTPKEELG-KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 387
            +  +   G +L+  +E+   +L   +  +L    I G FK+   E
Sbjct: 338 VKQRRAMDGARLLISMEERGYRLNQHIYSVL----ISGLFKEGKAE 379


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 106/198 (53%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           V+  +   G KP +ITY  L+  + R KR   +  +  ++ DNG+ P+     +++ A+ 
Sbjct: 44  VFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFS 103

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            +   ++ + ++++MKE G + + + YNTL+      G   E+ ++ E M   EN +P+ 
Sbjct: 104 ESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPND 163

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++ +I     + K+ EA  + ++M+ +G +P++    ++ + Y +   T+   R + +
Sbjct: 164 RTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILK 223

Query: 323 LPELGITPDDRFCGCLLN 340
           +P   + P++R CG +++
Sbjct: 224 MPYNIVKPNERTCGIIIS 241



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 107/236 (45%), Gaps = 2/236 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR    +    L  +  +   + D    + +I  +  +G  D  + ++++MK  G KP  
Sbjct: 68  TRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTT 127

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            TYN L+   G A RP++   + + M  D  + PN  TY  L++A+   +  E+  +V  
Sbjct: 128 STYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLH 187

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+Q  V  YNT+    A  G T+ A  +   M  +   +P+  T   +I+     
Sbjct: 188 KMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYN-IVKPNERTCGIIISGYCKE 246

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G + EA      M E G +PN  V  SLI+ Y     T+ V  AL  + E GI PD
Sbjct: 247 GNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPD 302



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 9/218 (4%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ LI+ + T    +   NV  +M A G++P+++TYN +     +     + +
Sbjct: 159 VKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAE 218

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM- 235
            +  +M  N + PN  T   ++  Y +     + L     MKE G+  +  ++N+L+   
Sbjct: 219 RLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGY 278

Query: 236 --CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
               D    DEA  + E+       +PD  TFS+++   S  G +   E +FN+M++AG 
Sbjct: 279 LDTTDTNGVDEALTLMEEF----GIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGI 334

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EP++   + L + Y +A +       L  + + G+ P+
Sbjct: 335 EPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPN 372



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 3/215 (1%)

Query: 119 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN  +   +I  Y   GN    L     MK +GV PN + +N+L+           V 
Sbjct: 229 VKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVD 288

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
                M + G+ P+  T+++++ A+  A   E+   ++ +M + G++  +  Y+ L    
Sbjct: 289 EALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGY 348

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   +A  +   M S    QP+   F+++I+     GK+  A  +  +M E G  PN
Sbjct: 349 VRAGQPRKAEALLTSM-SKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPN 407

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           L    +LI  YG+A++       L  + E G+ P+
Sbjct: 408 LKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPE 442



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 99/213 (46%), Gaps = 7/213 (3%)

Query: 113 RNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           R ++  +DPN   F++LIK Y    + +G       M+  G+KP+++T++ +++    A 
Sbjct: 258 RMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAG 317

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
                + I+ +M   G+ P+ + Y+ L + Y RA       ++   M + G+Q +V ++ 
Sbjct: 318 LMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFT 377

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           T+++     G  D AF + E M       P+  T+ ++I       +  +AE +   M E
Sbjct: 378 TIISGWCAAGKMDRAFRLCEKMHEM-GTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEE 436

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            G  P +    S +Q    A R   + +  NR+
Sbjct: 437 RGVVPEM----STMQLVADAWRAIGLFKEANRI 465



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           ++ + +CQ        M T+   +GK  EA+A+FN + E G +P L   T+L+    + +
Sbjct: 13  LRGNNSCQTVHARTKLMNTLIG-KGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQK 71

Query: 312 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           R   +   L+++ + G+ PD      ++N  +++ K
Sbjct: 72  RFKSIPALLSKVADNGMKPDSILLNAMINAFSESGK 107


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 3/225 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN   +S L+  Y   G ++    V+EEM   G++P+++ Y  L+D++ R  +  +  
Sbjct: 160 IEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAA 219

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +   MT+ GL PN  TY  L+ +  +     + L + + M EKG+Q  V  YNTL+   
Sbjct: 220 RVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGL 279

Query: 237 ADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           + V   DEA  + E+M   E   +PD  TF+S+I      G + +A  +   M E G   
Sbjct: 280 SSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRC 339

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           NL     LI    +  +    +  ++ +   G+ PD      L+N
Sbjct: 340 NLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILIN 384



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 8/213 (3%)

Query: 96  DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           D RA     A GL    ++   R D   + TLI+    A + D  + +  EM   G++PN
Sbjct: 107 DRRAAQ---AVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPN 163

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ Y+ LL    +  R   V  +++EM+  G+ P+   Y +L+ +  R    +    V  
Sbjct: 164 VVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMD 223

Query: 216 EMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            M E+G++ +V  YN L+ +MC + G   EA ++ ++M S +  QPD  T++++IT  S 
Sbjct: 224 MMTERGLEPNVVTYNVLINSMCKE-GSVREALDLRKNM-SEKGVQPDVVTYNTLITGLSS 281

Query: 275 RGKVSEAEAMFNEML--EAGFEPNLFVLTSLIQ 305
             ++ EA A+  EM+  E    P+L    S+I 
Sbjct: 282 VLEMDEAMALLEEMMQGETRVRPDLMTFNSVIH 314



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 4/215 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMK---AIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           D  +++T++      G  D  L +   M     +  +PN I+Y  L+  +   +R  Q  
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + + M D G+ P+  TY +L+R    A   +  + +  EM E G++ +V +Y+ LL   
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  +   ++FE+M S    +PD   ++++I      GKV +A  + + M E G EPN
Sbjct: 175 CKTGRWESVGKVFEEM-SGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPN 233

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +     LI    K     + +     + E G+ PD
Sbjct: 234 VVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPD 268



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 4/229 (1%)

Query: 105 AFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           A  L +     + R+ P+   F+++I      G     L V   M   G + N++ +N L
Sbjct: 288 AMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLL 347

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  + R  +  +   +  EM  +GL P+  TY+ L+  + + R  E   S   EM+ +GM
Sbjct: 348 IGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGM 407

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +     Y  LL    D G   +A ++F +M    NC+ D+  +S+MI      G+   AE
Sbjct: 408 EPEPVHYIPLLKAMCDQGMMGQARDLFNEM--DRNCKLDAAAYSTMIHGAFKSGEKKIAE 465

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               +M++ G  P+    +  I  + K+       R L ++   G  PD
Sbjct: 466 EFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPD 514



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 5/201 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  + D         +   ++ LI      G+    L++ + M   GV+P+++
Sbjct: 211 RHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVV 270

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMT--DNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           TYN L+  +       +   + +EM   +  + P+  T+ S++    +  +    L V  
Sbjct: 271 TYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRA 330

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSC 274
            M E G + ++  +N L+     V    +A E+ ++M SS   QPDS+T+S +I   C  
Sbjct: 331 MMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASS-GLQPDSFTYSILINGFCKM 389

Query: 275 RGKVSEAEAMFNEMLEAGFEP 295
           R +V  AE+  +EM   G EP
Sbjct: 390 R-QVERAESYLSEMRHQGMEP 409


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 5/233 (2%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           +V  AF +++    +  R +  +++ LI      G  D  +N++++M+     P + TY 
Sbjct: 19  DVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYT 78

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++  +  + R  +   ++ EM + G  PN +TY  ++ A  +    E+   +  EM EK
Sbjct: 79  VIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEK 138

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGK-V 278
           G+  SV  YN L+      G  + A EI  D+  S +C P+  T++ +  IC  CR K V
Sbjct: 139 GLVPSVPTYNALIDGYCKEGMVEAAQEIL-DLMHSNSCNPNERTYNEL--ICGFCRKKNV 195

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             A A+ ++MLE+   P++    SLI    K    D   R LN + E G+ PD
Sbjct: 196 HRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPD 248



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 115/261 (44%), Gaps = 38/261 (14%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G V+    ++ + R +        ++ ++     +G     +N++ EM+  G +PN+ T
Sbjct: 52  VGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHT 111

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGL------------------------------- 187
           Y  +++ M +  +  + + I  EM + GL                               
Sbjct: 112 YTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMH 171

Query: 188 ----SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
               +PN  TY  L+  + R +     +++  +M E  +  SV  YN+L+     +GY D
Sbjct: 172 SNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLD 231

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            A+ +  ++ +     PD WT+S  I T+C  +G++ EA  +FN + E G + N  + T+
Sbjct: 232 SAYRLL-NLMNENGVVPDQWTYSVFIDTLCK-KGRIEEANVLFNSLKEKGIKANEVIYTA 289

Query: 303 LIQCYGKAQRTDDVVRALNRL 323
           LI  Y KA + DD    L+R+
Sbjct: 290 LIDGYCKAGKMDDANSLLDRM 310



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 179/442 (40%), Gaps = 23/442 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A+ L +         D   +S  I      G  +    ++  +K  G+K N +
Sbjct: 226 KIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEV 285

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D   +A +     ++   M      PN +TY +L+    + R  ++ L +   M
Sbjct: 286 IYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESM 345

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG++ +V  Y  L+      G  D A  I + M SS   QPD + +++ I     RG 
Sbjct: 346 IQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSS-GYQPDVYIYTAFIHAFCTRGN 404

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EAE M + M E G  P+    T +I  YG     +     L R+ + G  P      C
Sbjct: 405 IKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSC 464

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE-ATELFNSISKDV 396
           L+       KEEL K  + V   +S          +  D+    K E A ELF  + +  
Sbjct: 465 LIK---HLLKEELTKKYKNVALCDSIPNV---FFADVADVWKMMKFETALELFEKMLEHG 518

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR--SPTQWSLHLKSLSLGAAL 454
                N    L + L      CK+  LG+  +++  +  R  SP++ +++   L+    L
Sbjct: 519 CSPNINTYAKLIIGL------CKVGRLGVAQKLFDHMNERGVSPSE-AIYNSLLNCCCEL 571

Query: 455 TALHIWINDLSKALESGEEFPPLLGINTGH-GKHKYSDKGLASVFESHLKELNAPFHDSP 513
                 +  +   +E G   P L  +N    G ++   K  A V  S+L  L   ++D  
Sbjct: 572 GIYGDAVRLVGAMMEHG-HLPLLESLNVLFCGLYEEGSKEKAKVVFSNL--LQCGYND-- 626

Query: 514 DKVGWFLTTEAAAKSWLESRSS 535
           D+V W +  +   K+ L    S
Sbjct: 627 DEVAWKILIDGLLKNGLSDGCS 648



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 107/235 (45%), Gaps = 3/235 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G VE A  + D   +     +   ++ LI  +    N    + +  +M    + P+++
Sbjct: 156 KEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVV 215

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+    +         +   M +NG+ P+  TY+  +    +    E+   ++  +
Sbjct: 216 TYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSL 275

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
           KEKG++ +  +Y  L+      G  D+A  + + M  +E+C P+S T++++I  +C  R 
Sbjct: 276 KEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM-LTEDCLPNSSTYNALIDGLCKER- 333

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           KV EA  +   M++ G +  +   T LI    K    D   R L+++   G  PD
Sbjct: 334 KVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPD 388


>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Glycine max]
          Length = 647

 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 115/235 (48%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G+   A  L+    N   + D +A  ++++   +AG     +++  ++   G+  + 
Sbjct: 379 SKVGHASEAHRLFCNMWNFHDKGDKDACMSMLESLCSAGKMTEAIDLLNKIHEKGITTDT 438

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I YN +   +GR K+   +  +Y++M  +G  P+  TY  L+ ++GRA   +  +  + E
Sbjct: 439 IMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEE 498

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++    +  V  YN+L+      G  DEA   F++M+  +   PD  T+S++I       
Sbjct: 499 LENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQ-EKGLNPDVVTYSTLIECFGKTD 557

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           KV  A  +F+EML     PNL     L+ C  ++ RT + V    +L + G+TPD
Sbjct: 558 KVEMACRLFDEMLAEECTPNLITYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 612



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 125/267 (46%), Gaps = 17/267 (6%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGN---FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           N  +R +   ++ L  +   + N   FD   ++  +M    V+ ++ T N L+   G  +
Sbjct: 120 NPSFRHESFTYNRLFLILSKSTNPARFDQARSLLHDMDRRAVRGSISTVNILVGFFGAGE 179

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
              +  ++ K+     L  N  TY  LL+AY RA        VY +M   G +L +  YN
Sbjct: 180 DLERCVSLVKKW---DLRLNAYTYKCLLQAYLRALDSSTAFRVYLDMIRHGYRLDIFGYN 236

Query: 231 TLLAMCADVGYTDE---AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            LL    D    DE   ++++FEDMK   +C+PD +T++ MI +     K  EA A+F  
Sbjct: 237 MLL----DALAKDEKVCSYKVFEDMKR-RHCEPDVFTYTIMIRMTGKSSKTDEALALFQA 291

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           ML  G  PNL    ++I+   K +  D  V   +++ E  I P++     +LN++    K
Sbjct: 292 MLAKGCTPNLIGYNTMIEALAKGRMVDKAVLLFSKMVENDIQPNEFTYSVILNLLVAEGK 351

Query: 348 -EELGKLVECVEKSNSK--LGYVVKLL 371
             +L  +V+  +K  +K    Y V+ L
Sbjct: 352 LNKLDNIVDISKKYINKQIYAYFVRTL 378



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 88/171 (51%), Gaps = 1/171 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   +     LY++ + +    D   ++ LI  +G AG  D  +  +EE++    KP++I
Sbjct: 450 RLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDVI 509

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN+L++ +G+     +    +KEM + GL+P+  TY++L+  +G+    E    ++ EM
Sbjct: 510 SYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEM 569

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
             +    ++  YN LL      G T EA +++  +K  +   PDS T++ +
Sbjct: 570 LAEECTPNLITYNILLDCLERSGRTAEAVDLYAKLK-QQGLTPDSITYAVL 619



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/263 (19%), Positives = 123/263 (46%), Gaps = 11/263 (4%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           ++ +++  +      D   ++ +I++ G +   D  L +++ M A G  PN+I YN +++
Sbjct: 250 SYKVFEDMKRRHCEPDVFTYTIMIRMTGKSSKTDEALALFQAMLAKGCTPNLIGYNTMIE 309

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKEKG 221
            + + +   +   ++ +M +N + PN  TY+   +LL A G+    ++ + + ++   K 
Sbjct: 310 ALAKGRMVDKAVLLFSKMVENDIQPNEFTYSVILNLLVAEGKLNKLDNIVDISKKYINK- 368

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
                 +Y   +   + VG+  EA  +F +M +  +        S + ++CS  GK++EA
Sbjct: 369 -----QIYAYFVRTLSKVGHASEAHRLFCNMWNFHDKGDKDACMSMLESLCSA-GKMTEA 422

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             + N++ E G   +  +  ++    G+ ++   +     ++ + G  PD      L++ 
Sbjct: 423 IDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISS 482

Query: 342 MTQTPKEELG-KLVECVEKSNSK 363
             +  + ++  K  E +E S+ K
Sbjct: 483 FGRAGRVDIAVKFFEELENSDCK 505



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 4/111 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+V+ A   +   + +    D   +STLI+ +G     +    +++EM A    PN+ITY
Sbjct: 522 GDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITY 581

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR----AYGRARY 206
           N LLD + R+ R  +   +Y ++   GL+P+  TYA L R     +G+ R+
Sbjct: 582 NILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLERLQSGGHGKLRF 632


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 116/226 (51%), Gaps = 1/226 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D   + Y EM    + P+++TY++++  + + +   +   + 
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ PN  TY S+L  Y  +   ++ +   ++M+  G++  V  YN+L+      
Sbjct: 255 TTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKN 314

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G + EA +IF+ M +    +PD  T+ +++   + +G + E  A+ + M+  G  P+  V
Sbjct: 315 GRSTEARKIFDSM-TKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHV 373

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
              LI  Y K ++ D+ +   +++ + G+ P+    G ++ ++ ++
Sbjct: 374 FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKS 419



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 3/180 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   +STLI  Y  AG  D    +   M ++G+KP+ +TYN L++   R  R     
Sbjct: 507 VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDAL 566

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++KEM  +G+SPN  TY  +L+     R       +Y  + + G QL ++ YN +L   
Sbjct: 567 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                TDEA  +F+++  ++  Q ++ TF+ MI      G+  EA+ +F      G  PN
Sbjct: 627 CKNNLTDEALRMFQNLCLTD-LQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPN 685



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A+  Y    + +   D   +S++I         D  + V   M   GV PN +
Sbjct: 208 KEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCM 267

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN++L     +++P +     K+M  +G+ P+  TY SL+    +     +   ++  M
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM 327

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++  +  Y TLL   A  G   E   +  D+       PD   F+ +I   + + K
Sbjct: 328 TKRGLEPDIATYCTLLQGYATKGALVEMHALL-DLMVRNGIHPDHHVFNILICAYAKQEK 386

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EA  +F++M + G  PN+    ++I    K+   DD +    ++ + G+TP+
Sbjct: 387 VDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN 440



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 114/237 (48%), Gaps = 1/237 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D         D   + TL++ Y T G       + + M   G+ P
Sbjct: 310 YLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +   +N L+    + ++  +   ++ +M  +GL+PN  TY +++    ++   +D +  +
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++G+  ++ +Y +L+         D+A E+  +M     C  ++  F+S+I     
Sbjct: 430 EQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL-NTIFFNSIIHSHCK 488

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+V E+E +F+ M+  G +PN+   ++LI  Y  A + D+  + L+ +  +G+ PD
Sbjct: 489 EGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 1/194 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG ++ A  L     +   + D   ++TLI  Y      D  L +++EM + GV PN+IT
Sbjct: 524 AGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 583

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +L  +   +R    K +Y  +T +G     +TY  +L    +    ++ L +++ + 
Sbjct: 584 YNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 643

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              +QL    +N ++     VG  DEA ++F    SS    P+ WT+  M      +G +
Sbjct: 644 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAF-SSNGLVPNYWTYRLMAENIIGQGLL 702

Query: 279 SEAEAMFNEMLEAG 292
            E + +F  M + G
Sbjct: 703 EELDQLFFSMEDNG 716



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 107/239 (44%), Gaps = 6/239 (2%)

Query: 121 PNAFSTLIKLYGTAGNFDG-----CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           P+ FS  I L G             L++  + +  G  P++++Y  +++   +     + 
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKA 215

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
            + Y EM D  +SP+  TY+S++ A  + +  +  + V   M + G+  +   YN++L  
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG 275

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
                   EA    + M+S +  +PD  T++S++      G+ +EA  +F+ M + G EP
Sbjct: 276 YCSSEQPKEAIGFLKKMRS-DGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEP 334

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           ++    +L+Q Y       ++   L+ +   GI PD      L+    +  K +   LV
Sbjct: 335 DIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLV 393



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 129/296 (43%), Gaps = 2/296 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+V+ A   +++  +E    +   +++LI        +D    +  EM   G+  N I
Sbjct: 418 KSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTI 477

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N+++ +  +  R  + + ++  M   G+ PN  TY++L+  Y  A   ++   +   M
Sbjct: 478 FFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              GM+     YNTL+     V   D+A  +F++M SS    P+  T++ ++       +
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS-GVSPNIITYNIILQGLFHTRR 596

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            + A+ ++  + ++G +  L     ++    K   TD+ +R    L    +  + R    
Sbjct: 597 TAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 656

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFNSI 392
           ++  + +  + +  K +     SN  +  Y    L+ E  I     +E  +LF S+
Sbjct: 657 MIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSM 712


>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           brasiliensis]
          Length = 382

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 138 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 197

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 198 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 257

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 258 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 312

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 313 VKDITVFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLN 359



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 83

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 84  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 143

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 144 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 203

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 204 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 262

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 263 AGLVAHAKRLLHELKRPDNIPRD 285



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 182

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SMI I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 183 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 325 ELGITPD 331
             G+  D
Sbjct: 243 SSGVEID 249



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 262 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 317

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+ +  +    VY EM
Sbjct: 318 VFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 377

Query: 218 KEKG 221
           +E G
Sbjct: 378 QEVG 381


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 150/319 (47%), Gaps = 17/319 (5%)

Query: 122 NAFS---TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +AFS    L+ L+    +    + +  EM+  GV P  I+  NLL  MG      +V   
Sbjct: 117 DAFSYNRILVLLFSNRADPAEAMRLIAEMERDGV-PGNISTVNLLVGMG-----VEVGRC 170

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
               +  GL  N  TY  L++A+ R+R       VY +M+ KG +L +  YN LL   A 
Sbjct: 171 LDLASKWGLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAK 230

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D+A+++FEDMK +  C PD++T++ +I +    GK ++  ++  EM+  G   NL 
Sbjct: 231 AGMVDQAYQVFEDMKQNY-CDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLI 289

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
              ++I+  GK +  D+ +  L+++ E    P+      +L+V++     +L +L E ++
Sbjct: 290 AYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLST--GGQLHRLNEILD 347

Query: 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELF----NSISKDVKKAYCNCLIDLCVNLNLL 414
             +  L   V   L +   +     EA  +F    NS  K  + A+ + L  LC N    
Sbjct: 348 ICSGCLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALC-NAEKT 406

Query: 415 ENACKLLELGLTLEVYTDI 433
             A  LL +     + TD+
Sbjct: 407 TEAIDLLHMMPEKGITTDV 425



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 111/225 (49%), Gaps = 1/225 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            +S LIK    +G+     +V+  M     K +   + ++L+ +  A++  +   +   M
Sbjct: 357 VYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMM 416

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            + G++ +   Y  +  A G+ +      S+Y  M+  G+   V  YN +++    VG  
Sbjct: 417 PEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLV 476

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D+A E+FE+M+   +C+PD  T++SMI      G + EA  +F +M E G++P++F  + 
Sbjct: 477 DKASELFEEMEDG-SCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSI 535

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           LI+C+GK+ + D      + +   G  P+      LL+ + +  K
Sbjct: 536 LIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGK 580



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 114/234 (48%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+   A  ++ R  N   + D  AF ++++    A      +++   M   G+  ++ 
Sbjct: 367 KSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVG 426

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +   +G+ K+   + ++Y  M  NG+ P+  TY  ++ ++GR    +    ++ EM
Sbjct: 427 MYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEM 486

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++   +  V  YN+++      G  DEA  +F+DM+  +   PD +T+S +I       K
Sbjct: 487 EDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQ-EKGYDPDVFTYSILIECFGKSNK 545

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V  A ++F+EM+  G  PN+     L+ C  +  +T +  +    L + G+TPD
Sbjct: 546 VDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLKQQGLTPD 599



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 35/250 (14%)

Query: 116 KW--RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           KW  R++   +  L++ +  +        VYE+M+  G K ++  YN LL+ + +A    
Sbjct: 176 KWGLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVD 235

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           Q   ++++M  N   P+  TY  L+R  G+A      +S+  EM  +G  L++  YNT++
Sbjct: 236 QAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVI 295

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM----------------ITICS---- 273
                    DEA  +   M  S+ C+P+ +T+S M                + ICS    
Sbjct: 296 EALGKNKMVDEAIFMLSKMIESD-CRPNQFTYSIMLDVLSTGGQLHRLNEILDICSGCLN 354

Query: 274 -----------CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
                      C+ G  SEA ++F  M  +  + + +   S+++    A++T + +  L+
Sbjct: 355 RPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLH 414

Query: 322 RLPELGITPD 331
            +PE GIT D
Sbjct: 415 MMPEKGITTD 424



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 89/172 (51%), Gaps = 1/172 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           ++Y+ M+A GV P++ TYN ++ + GR     +   +++EM D    P+  TY S++   
Sbjct: 446 SLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCL 505

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
           G+    ++   ++++M+EKG    V  Y+ L+         D A  +F++M  ++ C P+
Sbjct: 506 GKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEM-VAQGCIPN 564

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
             T++ ++     RGK +EA   +  + + G  P+    + L +   ++QRT
Sbjct: 565 IVTYNILLDCLERRGKTTEAHKFYETLKQQGLTPDSITYSILERLESRSQRT 616



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 90  LKEKSYDTRAGNVEMAFG-------------LYDRARNEKWRIDPNAFSTLIKLYGTAGN 136
           + EK   T  G   M F              LYD  R      D   ++ +I  +G  G 
Sbjct: 416 MPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGL 475

Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196
            D    ++EEM+    KP+++TYN++++ +G+     +   ++K+M + G  P+  TY+ 
Sbjct: 476 VDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSI 535

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L+  +G++   +   S++ EM  +G   ++  YN LL      G T EA + +E +K  +
Sbjct: 536 LIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLK-QQ 594

Query: 257 NCQPDSWTFS 266
              PDS T+S
Sbjct: 595 GLTPDSITYS 604



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 58/106 (54%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+++ A  L+   + + +  D   +S LI+ +G +   D   ++++EM A G  PN++TY
Sbjct: 509 GDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTY 568

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           N LLD + R  +  +    Y+ +   GL+P+  TY+ L R   R++
Sbjct: 569 NILLDCLERRGKTTEAHKFYETLKQQGLTPDSITYSILERLESRSQ 614



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 64/135 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  L++   +   + D   ++++I   G  G+ D    ++++M+  G  P++ 
Sbjct: 472 RVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVF 531

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G++ +     +++ EM   G  PN  TY  LL    R     +    Y  +
Sbjct: 532 TYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETL 591

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y+ L
Sbjct: 592 KQQGLTPDSITYSIL 606


>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 426

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  + +    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGSGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYSNVVEVFDKMRGLGYFPDSNVTALVLN 398



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 119/263 (45%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EM+  GV PN ++Y+ LL 
Sbjct: 63  AISIFSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLT 122

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  T++ EM +                                    G+ P
Sbjct: 123 MYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I S  GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 243 QEMQ-SRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 302 AGLVAHAKRLLHELKRPDNIPRD 324



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L   ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G SP+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALTVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 120/248 (48%), Gaps = 8/248 (3%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFSPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + L+V+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVENKKFLEALTVFAEMRE 142

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
               L +T  N ++ +   +G   EA ++F  M+     +P+  ++++++ +        
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM-GIEPNVVSYNTLLRVYGDAELFG 201

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA  +F  M     E N+    S++  YGK    +     +  +   GI P+      ++
Sbjct: 202 EAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTII 261

Query: 340 NVMTQTPK 347
           ++ ++  K
Sbjct: 262 SIWSKIGK 269



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  L+  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           aristata]
          Length = 382

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 138 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 197

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 198 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMI 257

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 258 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 312

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 313 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 359



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMKA GV PN  +Y+ LL 
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLT 83

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 84  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 143

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 144 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 203

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 204 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYER 262

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 263 AGLVAHAKRLLHELKRPDNIPRD 285



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 64  GEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 182

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SM+ I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 325 ELGITPD 331
             GI  D
Sbjct: 243 SSGIEID 249



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 262 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 317

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 318 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 377

Query: 218 KEKG 221
           +E G
Sbjct: 378 QEVG 381


>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           fucata]
          Length = 382

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 138 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 197

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 198 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMI 257

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 258 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 312

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 313 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 359



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMKA GV PN  +Y+ LL 
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLT 83

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 84  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 143

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 144 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 203

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 204 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYER 262

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 263 AGLVAHAKRLLHELKRPDNIPRD 285



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 64  GEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 182

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SM+ I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 325 ELGITPD 331
             GI  D
Sbjct: 243 SSGIEID 249



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 262 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 317

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 318 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 377

Query: 218 KEKG 221
           +E G
Sbjct: 378 QEVG 381


>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 426

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERSGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVLN 398



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 108/227 (47%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +  ++  D  A++ +I ++G A  F    ++  EM+  GV PN  +Y+ LL 
Sbjct: 63  AISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLT 122

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                K+  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++ 
Sbjct: 123 MYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  +
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +  +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRSR-FTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 3/228 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  +DP+   F+TLI  YGTAG  + C  V  +M+  G+K ++I++ +++    +  + 
Sbjct: 431 EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKI 490

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   I  +M    ++PN   Y S++ AY  +   E    +  +MK  G+  S+  YN L
Sbjct: 491 PEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLL 550

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           L         DEA E+   +++ +  +PD  +++++I+ C  +G   +A  +  EM + G
Sbjct: 551 LKGLCRSSQIDEAEELIYTLRN-QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 609

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             P L    +L+     A R  D+     ++    + P     G +++
Sbjct: 610 IRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 657



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 40/271 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R+G    A  ++D   +    + PN   ++T+I  +   G+ +    + ++M   G KPN
Sbjct: 206 RSGKGSDALKVFDEMVD--MGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPN 263

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++TYN LL  + RA R  + + +  EM  + + P+  TY+ L     R       LS++ 
Sbjct: 264 IVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFA 323

Query: 216 EMKEKGMQL-----------------------------------SVTLYNTLLAMCADVG 240
           E  +KG+ L                                   +  +YNTL+     V 
Sbjct: 324 ESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVR 383

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
               AF IFE MK S + +PD  T++++I        V++AE +  EM ++G +P++   
Sbjct: 384 DLRGAFCIFEQMK-SRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETF 442

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +LI  YG A + +     L+ + + GI  D
Sbjct: 443 NTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD 473



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 105/208 (50%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y    +  G   ++E+MK+  ++P+ ITYN L++ + + +   + + +  EM 
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G+ P+  T+ +L+ AYG A   E   +V  +M++KG++  V  + +++      G   
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  I +DM   ++  P++  ++S+I      G   +A  +  +M  +G   ++     L
Sbjct: 492 EAVAILDDM-IYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLL 550

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++   ++ + D+    +  L   G+ PD
Sbjct: 551 LKGLCRSSQIDEAEELIYTLRNQGLRPD 578



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 6/250 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKP-N 155
           R  +V  AFGL   A     R D  A++ +++    AG+ D  L +   M ++ G  P +
Sbjct: 137 RHADVRAAFGLLVAA---GARPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPD 193

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             +YN ++  + R+ +      ++ EM D G+ PNW TY +++  + +    E    +  
Sbjct: 194 AFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRD 253

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G + ++  YN LL+     G  DE   + ++M +S +  PD +T+S +    +  
Sbjct: 254 QMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEM-ASHSMFPDGFTYSILFDGLTRT 312

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G+     ++F E L+ G     +  + L+    K  +     + L  L   G+ P     
Sbjct: 313 GESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIY 372

Query: 336 GCLLNVMTQT 345
             L+N   Q 
Sbjct: 373 NTLINGYCQV 382



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+  ++ A  L    RN+  R D  +++T+I      G+ D  L + +EM   G++P + 
Sbjct: 556 RSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLR 615

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+  +  A R   ++ +Y++M    + P+ + Y  ++ AY R        S+ +EM
Sbjct: 616 TYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEM 675

Query: 218 KEKGMQLSVT 227
            EKG+    T
Sbjct: 676 SEKGIAFDDT 685



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/267 (19%), Positives = 102/267 (38%), Gaps = 36/267 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG ++    L D   +     D   +S L       G     L+++ E    GV     
Sbjct: 276 RAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAY 335

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T + LL+ + +  +  + + + + +   GL P    Y +L+  Y + R       ++ +M
Sbjct: 336 TCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM 395

Query: 218 KEK-----------------------------------GMQLSVTLYNTLLAMCADVGYT 242
           K +                                   G+  SV  +NTL+      G  
Sbjct: 396 KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQL 455

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           ++ F +  DM+  +  + D  +F S++      GK+ EA A+ ++M+     PN  V  S
Sbjct: 456 EKCFTVLSDMQ-QKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGIT 329
           +I  Y ++  T+     + ++   G++
Sbjct: 515 IIDAYIESGDTEQAFLLVEKMKNSGVS 541



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++ + N LL+++    R   V+  +  +   G  P+   +  +++A   A   +  L++
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 214 YREM--KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            R M   E         YN ++A     G   +A ++F++M       P+  T+++MI  
Sbjct: 180 VRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEM-VDMGVVPNWITYNTMIDG 238

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G +     + ++ML  G +PN+     L+    +A R D+    ++ +    + PD
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPD 298

Query: 332 DRFCGCLLNVMTQTPKEE--LGKLVECVEKSNSKLGYVVKLLL 372
                 L + +T+T +    L    E ++K      Y   +LL
Sbjct: 299 GFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILL 341


>gi|255661200|gb|ACU25769.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 426

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 125/248 (50%), Gaps = 16/248 (6%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN ++   G+     
Sbjct: 177 KXGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ P+  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMHNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
             ++ V   +I  + K ++  +VV    ++  LG  PD      +LN          GKL
Sbjct: 352 VKDITVFERMINLFSKYKKYSNVVEVFEKMRGLGYFPDSNVIALVLNA--------YGKL 403

Query: 354 VECVEKSN 361
            E  EK+N
Sbjct: 404 RE-FEKAN 410



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 1/213 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++STL+ +Y     F   L+V+ EM+ I    N+IT N ++D  G+     +   ++
Sbjct: 113 DTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLF 172

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YNT++ +    
Sbjct: 173 WGMRKXGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKT 232

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              ++A  + ++M  +   +PD+ T+S++I+I    GK+  A  +F ++  +G E +  +
Sbjct: 233 LEHEKANNLIQEM-HNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 291

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             ++I  Y +A       R L+ L      P D
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 324



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 121/267 (45%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     +F   ++++  +K  G+ P+++ Y
Sbjct: 23  GLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKAISIFSRLKRSGITPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N++++  G+AK   + +++  EM   G+ P+  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMYVENQKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T+++M+ I     +  +A  +  EM   G EP+    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPDAITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVEID 288



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G++P+   Y S++  +G+A+   +  S+  EM+  G+      Y+TLL M  + 
Sbjct: 68  SRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  +  T + MI +        EA+ +F  M + G EPN+  
Sbjct: 128 QKFLEALSVFAEMREIK-CLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 10/158 (6%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
            LSP+  TY++L+  +G+    +D LS  ++M++  +   + LY+ L+ +   +    +A
Sbjct: 4   ALSPDKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKA 63

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             IF  +K S    PD   ++SMI +        EA ++ +EM  AG  P+    ++L+ 
Sbjct: 64  ISIFSRLKRS-GITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLT 122

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            Y + Q+          L  L +  + R   CLLN++T
Sbjct: 123 MYVENQKF---------LEALSVFAEMREIKCLLNLIT 151



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+P+A  +ST+I ++G  G  D    +++++++ GV+ + I Y  ++    RA      K
Sbjct: 250 IEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYERAGLVAHAK 309

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 310 RLLHELKRPDNIPR-DTAIHILAGAGRI---EEATWVFRQAIDAGEVKDITVFERMINLF 365

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA---MFNEMLEAG 292
           +         E+FE M+      PDS   + +  + +  GK+ E E     + EM + G
Sbjct: 366 SKYKKYSNVVEVFEKMRGL-GYFPDS---NVIALVLNAYGKLREFEKANDAYTEMQDEG 420



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 10/164 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +          ++ +  Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
               T I +   AG  +    V+ +    G   ++  +  +++   + K+   V  ++++
Sbjct: 321 IPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMINLFSKYKKYSNVVEVFEK 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
           M   G  P+ N  A +L AYG+ R  E     Y EM+++G   S
Sbjct: 381 MRGLGYFPDSNVIALVLNAYGKLREFEKANDAYTEMQDEGCXFS 424


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 135/304 (44%), Gaps = 8/304 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R   V+ A GL+   +  + + D + +++LI  +  AG +   +N+ ++M+   + P+ 
Sbjct: 164 ARHNQVDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSR 223

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYNN+++  G A    +   + K+MT+NG+ P+  T+  +L A+         ++ +  
Sbjct: 224 TTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEI 283

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCR 275
           MK   +       N ++     V    EA E+F  M+     C PD  T++S++   S  
Sbjct: 284 MKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVC 343

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G+    +A+F+ M+  G  PN+    +L+  Y       + +     L + G  PD    
Sbjct: 344 GQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSY 403

Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNS----KLGYVVKLLLEEQDIEGDFKKEATELFNS 391
             LLN   ++   E  + V    + N+    K+ Y    L++     G   KEA  L + 
Sbjct: 404 TSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSY--NALIDAYGSAGML-KEAISLLHE 460

Query: 392 ISKD 395
           + +D
Sbjct: 461 MEQD 464



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 4/174 (2%)

Query: 105 AFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           A  L++  R  +    P+   +++++  Y   G  + C  V++ M A GV+PN+++YN L
Sbjct: 312 AIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNAL 371

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L          +    +K +  NG  P+  +Y SLL AYGR+   E    V+ EM++   
Sbjct: 372 LGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNAC 431

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CR 275
           + +   YN L+      G   EA  +  +M+  +  QPD  + S+++T C  CR
Sbjct: 432 KPNKVSYNALIDAYGSAGMLKEAISLLHEME-QDGIQPDVISISTLLTACGRCR 484



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 1/205 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E    ++D    E  R +  +++ L+  Y + G     L  ++ +K  G KP++++Y
Sbjct: 344 GQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSY 403

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +LL+  GR+  P + + ++ EM  N   PN  +Y +L+ AYG A   ++ +S+  EM++
Sbjct: 404 TSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQ 463

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G+Q  V   +TLL  C       +   I    K S   Q ++  ++S I      G   
Sbjct: 464 DGIQPDVISISTLLTACGRCRQPTKIGIILAAAK-SRGIQLNTVAYNSGIGSYLSLGDYK 522

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLI 304
           +A  ++  M     +P+      LI
Sbjct: 523 KALELYTSMRTGNVKPDAVTYNILI 547



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 138/343 (40%), Gaps = 57/343 (16%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG    A  + D  +          ++ +I   G AGN+   L + ++M   GV P++
Sbjct: 199 ARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDL 258

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-----------------------WN- 192
           IT+N +L       +  +    ++ M  + ++P+                       +N 
Sbjct: 259 ITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNS 318

Query: 193 -------------TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
                        TY S++ +Y      E+  +V+  M  +G++ ++  YN LL   A  
Sbjct: 319 MRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASH 378

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA E F+ +K +   +PD  +++S++          +A  +FNEM +   +PN   
Sbjct: 379 GMHTEALETFKLLKQN-GFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVS 437

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
             +LI  YG A    + +  L+ + + GI PD      LL    +  +     ++    K
Sbjct: 438 YNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAK 497

Query: 360 S----------NSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           S          NS +G  + L        GD+KK A EL+ S+
Sbjct: 498 SRGIQLNTVAYNSGIGSYLSL--------GDYKK-ALELYTSM 531



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 68/143 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+   E A  +++  R    + +  +++ LI  YG+AG     +++  EM+  G++P++I
Sbjct: 412 RSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVI 471

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           + + LL   GR ++P ++  I       G+  N   Y S + +Y      +  L +Y  M
Sbjct: 472 SISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSM 531

Query: 218 KEKGMQLSVTLYNTLLAMCADVG 240
           +   ++     YN L++    +G
Sbjct: 532 RTGNVKPDAVTYNILISGSCKLG 554


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 148/304 (48%), Gaps = 15/304 (4%)

Query: 99  AGNVEMAFGLYDRA-RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           AG+V  A  +  R  ++    +D  A + L+      G+      V++EM  +G+ PN +
Sbjct: 15  AGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEV 74

Query: 158 TYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           TY  L+    T G+ ++ +    +++EM   G+ PN  TY  L+  + R    E   S++
Sbjct: 75  TYTALMHGYFTHGQREKGF---ALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLF 131

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM  +G+  +V  YNTL+A     G   +A ++  DM  +E  +P   TF+ ++     
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLL-DMMRTEGTRPSIITFNLLVDGYGK 190

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            GK+S A   FN+M  AGF+P+      LI  + +A+      RAL+ + E G+ P    
Sbjct: 191 AGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVT 250

Query: 335 CGCLLNVMTQTPKEELGKLVECV---EKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFN 390
              L++   +  +  +GK  E +   EK+  ++  +   +L+    +EG+  K+A +LF 
Sbjct: 251 YTILIDSFAR--ENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNM-KDARKLFQ 307

Query: 391 SISK 394
           S+ +
Sbjct: 308 SMGE 311



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 2/293 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  E A  L+D         +  +++TLI      G       + + M+  G +P++I
Sbjct: 120 RTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSII 179

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+D  G+A +       + +M   G  P+  TY  L+  + RAR          +M
Sbjct: 180 TFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDM 239

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G++ +   Y  L+   A   +  +AFEI   M+ +   + D+ T+  ++      G 
Sbjct: 240 KERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKA-GLEVDAHTYGVLVRALCMEGN 298

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +A  +F  M E G EP+  +   +I  YG+   +   ++ +  + + G+ P+    G 
Sbjct: 299 MKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGL 358

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
            + V+ +  K +E   L++ +E   S  G+    +  + D +   + + TE F
Sbjct: 359 TIRVLCKDDKCQEAEALLDDMETIRSFAGHHQNFIASKSDSQQKDEDKCTEHF 411


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 116/226 (51%), Gaps = 1/226 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D   + Y EM    + P+++TY++++  + + +   +   + 
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ PN  TY S+L  Y  +   ++ +   ++M+  G++  V  YN+L+      
Sbjct: 255 TTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKN 314

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G + EA +IF+ M +    +PD  T+ +++   + +G + E  A+ + M+  G  P+  V
Sbjct: 315 GRSTEARKIFDSM-TKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHV 373

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
              LI  Y K ++ D+ +   +++ + G+ P+    G ++ ++ ++
Sbjct: 374 FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKS 419



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 3/181 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   +STLI  Y  AG  D    +   M ++G+KP+ +TYN L++   R  R     
Sbjct: 507 VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDAL 566

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++KEM  +G+SPN  TY  +L+     R       +Y  + + G QL ++ YN +L   
Sbjct: 567 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                TDEA  +F+++  ++  Q ++ TF+ MI      G+  EA+ +F  +   G  P+
Sbjct: 627 CKNNLTDEALRMFQNLCLTD-LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 685

Query: 297 L 297
           +
Sbjct: 686 V 686



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A+  Y    + +   D   +S++I         D  + V   M   GV PN +
Sbjct: 208 KEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCM 267

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN++L     +++P +     K+M  +G+ P+  TY SL+    +     +   ++  M
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM 327

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++  +  Y TLL   A  G   E   +  D+       PD   F+ +I   + + K
Sbjct: 328 TKRGLEPDIATYCTLLQGYATKGALVEMHALL-DLMVRNGIHPDHHVFNILICAYAKQEK 386

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EA  +F++M + G  PN+    ++I    K+   DD +    ++ + G+TP+
Sbjct: 387 VDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN 440



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 113/262 (43%), Gaps = 36/262 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A G   + R++    D   +++L+      G       +++ M   G++P++ TY  LL 
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                    ++  +   M  NG+ P+ + +  L+ AY +    ++ + V+ +M++ G+  
Sbjct: 345 GYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNP 404

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI--------------- 269
           +V  Y  ++ +    G  D+A   FE M   E   P+   ++S+I               
Sbjct: 405 NVVTYGAVIGILCKSGSVDDAMLYFEQM-IDEGLTPNIIVYTSLIHSLCIFDKWDKAEEL 463

Query: 270 -------TIC------------SCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
                   IC             C+ G+V E+E +F+ M+  G +PN+   ++LI  Y  
Sbjct: 464 ILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCL 523

Query: 310 AQRTDDVVRALNRLPELGITPD 331
           A + D+  + L+ +  +G+ PD
Sbjct: 524 AGKMDEATKLLSSMFSVGMKPD 545



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 4/221 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG ++ A  L     +   + D   ++TLI  Y      D  L +++EM + GV PN+IT
Sbjct: 524 AGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 583

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +L  +   +R    K +Y  +T +G     +TY  +L    +    ++ L +++ + 
Sbjct: 584 YNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 643

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              +QL    +N ++     VG  DEA ++F  + S+    PD  T+S M      +G +
Sbjct: 644 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAAL-SANGLVPDVRTYSLMAENLIEQGLL 702

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            E + +F  M E G   N  +L S+++   K  +  D+ RA
Sbjct: 703 EELDDLFLSMEENGCTANSRMLNSIVR---KLLQRGDITRA 740



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 107/239 (44%), Gaps = 6/239 (2%)

Query: 121 PNAFSTLIKLYGTAGNFDG-----CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           P+ FS  I L G             L++  + +  G  P++++Y  +++   +     + 
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKA 215

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
            + Y EM D  +SP+  TY+S++ A  + +  +  + V   M + G+  +   YN++L  
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG 275

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
                   EA    + M+S +  +PD  T++S++      G+ +EA  +F+ M + G EP
Sbjct: 276 YCSSEQPKEAIGFLKKMRS-DGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEP 334

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           ++    +L+Q Y       ++   L+ +   GI PD      L+    +  K +   LV
Sbjct: 335 DIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLV 393



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 3/211 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+++I  +   G       +++ M  IGVKPN+ITY+ L+D    A +  +   +   M 
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMF 538

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ P+  TY +L+  Y R    +D L++++EM   G+  ++  YN +L        T 
Sbjct: 539 SVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTA 598

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-EAEAMFNEMLEAGFEPNLFVLTS 302
            A E++  +  S   Q +  T+ ++I    C+  ++ EA  MF  +     +        
Sbjct: 599 AAKELYVGITKS-GTQLELSTY-NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 656

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           +I    K  R D+       L   G+ PD R
Sbjct: 657 MIGALLKVGRNDEAKDLFAALSANGLVPDVR 687



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 103/226 (45%), Gaps = 1/226 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+V+ A   +++  +E    +   +++LI        +D    +  EM   G+  N I
Sbjct: 418 KSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTI 477

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N+++ +  +  R  + + ++  M   G+ PN  TY++L+  Y  A   ++   +   M
Sbjct: 478 FFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              GM+     YNTL+     V   D+A  +F++M SS    P+  T++ ++       +
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSS-GVSPNIITYNIILQGLFHTRR 596

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            + A+ ++  + ++G +  L     ++    K   TD+ +R    L
Sbjct: 597 TAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 642



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 97/255 (38%), Gaps = 44/255 (17%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG---LSPNWNTYASLL 198
           +V+EE+   G   ++   N  L  + R   P    + Y  M   G   ++P  +TY  L+
Sbjct: 36  HVFEELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYGILI 94

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTD-------------- 243
               RA   +   +    + +KG ++    +  LL  +CAD   +D              
Sbjct: 95  GCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSC 154

Query: 244 ---------------------EAFEIFEDMKSSE--NCQPDSWTFSSMITICSCRGKVSE 280
                                EA E+   M         PD  +++++I      G   +
Sbjct: 155 MPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDK 214

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A + ++EML+    P++   +S+I    K Q  D  +  L  + + G+ P+      +L+
Sbjct: 215 AYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILH 274

Query: 341 --VMTQTPKEELGKL 353
               ++ PKE +G L
Sbjct: 275 GYCSSEQPKEAIGFL 289


>gi|410110097|gb|AFV61128.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           rugosa]
          Length = 348

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 120 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 179

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 180 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 239

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 240 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 294

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 295 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 341



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMKA GV PN  +Y+ LL 
Sbjct: 6   AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLT 65

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 66  MYVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 125

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 126 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 185

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 186 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 244

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 245 AGLVAHAKRLLHELKRPDNIPRD 267



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 36/231 (15%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           ++   ++++  +K  G  P+++ YN +++  G+AK   + +++  EM   G+ PN  +Y+
Sbjct: 2   DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYS 61

Query: 196 SLLRAYGRARYGEDTLSVYREMKE-----------------------------------K 220
           +LL  Y   +   + LSV+ EM+E                                    
Sbjct: 62  TLLTMYVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +
Sbjct: 122 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEK 180

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 231


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 122/242 (50%), Gaps = 3/242 (1%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ +I  +  A   D     + +M+  GV PN++T+N L++   +     + + + + +
Sbjct: 431 SYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESL 490

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            +NGL P+  T++S++    + +  E+ L  + EM E G+  +  +YN L+     +G  
Sbjct: 491 LENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDV 550

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             + ++   M+  E   PD+++++++I I     KV +A+ +F+ M  +G  P+ +  ++
Sbjct: 551 ARSVKLLRRMQ-KEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSA 609

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP-KEELGKLVE-CVEKS 360
            I+   ++ R ++  +    +   G +PD   C  ++ ++ Q    EE   ++E C +K 
Sbjct: 610 FIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQKG 669

Query: 361 NS 362
            S
Sbjct: 670 IS 671



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           +V+E ++  GVK  +  Y  L++ + + +   +   +Y ++  +GL  N  +Y  ++  +
Sbjct: 380 DVFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCF 439

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQP 260
            RA+  ++    +R+M+ +G+  ++  +NTL+   C D G  D+A ++ E +  +   +P
Sbjct: 440 CRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKD-GAIDKARKLLESLLEN-GLKP 497

Query: 261 DSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           D +TFSS++  +C  + +  EA   F EM+E G  PN  +   LI+           V+ 
Sbjct: 498 DIFTFSSIVDGLCQIK-RTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKL 556

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN-SKLGYVVKLLLEEQDI 377
           L R+ + GI+PD      L+ +  +  K E+  KL + + +S  +   Y     +E    
Sbjct: 557 LRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSE 616

Query: 378 EGDFKKEATELFNSISKD---VKKAYCNCLIDLCVNLNLLENACKLLE 422
            G   +EA ++F S+  +        CN +I + V    +E A  ++E
Sbjct: 617 SGRL-EEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIE 663



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/411 (20%), Positives = 170/411 (41%), Gaps = 33/411 (8%)

Query: 41  LQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIW---VNPKSPRASKLKEKSYDT 97
           L  +++ L  + + +  ++ QNP +       + K + W   VNP     + +     +T
Sbjct: 66  LSSKTLLLNPSYAVSIFQNQQNPSH-------AIKFHSWLSHVNPTLAAHNSVHRALRNT 118

Query: 98  --RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
             R G   ++  L    RN  +R+  +    L+  +G  G  +   +V+ ++  +G+ P 
Sbjct: 119 LHRKGPALLSVDLLRELRNLGFRVTEDLLCALLASWGRLGLANYSAHVFCQISFLGLSPT 178

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
              YN L+D + ++         +++M  +    +  TY +L+    +    ++ L + R
Sbjct: 179 TRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVR 238

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSC 274
           +MK+KG   +V  Y  L+         DEAF +FE MK S    P+  T  +++  +  C
Sbjct: 239 QMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDS-GVYPNEATVRALVHGVFRC 297

Query: 275 RGKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNR-LPELGIT 329
               S+A  + +E L+   E      +    +++ C        ++V  L R L   G  
Sbjct: 298 VDP-SKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMVVFLRRVLGRGGYF 356

Query: 330 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 388
           P +     ++  + +  +  E   + E + K   K G    L L E   + ++++E   +
Sbjct: 357 PGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRV 416

Query: 389 FNSISKD--VKKAYC-NCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436
           +  +  D  +   +  N +I+      L++NA          E + D+Q R
Sbjct: 417 YGQLISDGLISNVFSYNMIINCFCRAKLMDNAS---------EAFRDMQVR 458



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 81/181 (44%), Gaps = 1/181 (0%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  P    +N ++  + +     +   +++ +   G+      Y +L+    +  + E+ 
Sbjct: 354 GYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEG 413

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             VY ++   G+  +V  YN ++         D A E F DM+      P+  TF+++I 
Sbjct: 414 DRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQ-VRGVVPNLVTFNTLIN 472

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G + +A  +   +LE G +P++F  +S++    + +RT++ +     + E GI P
Sbjct: 473 GHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINP 532

Query: 331 D 331
           +
Sbjct: 533 N 533



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 1/197 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  L +       + D   FS+++         +  L  + EM   G+ PN + Y
Sbjct: 478 GAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIY 537

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+ ++       +   + + M   G+SP+  +Y +L++ + R    E    ++  M  
Sbjct: 538 NILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSR 597

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G+      Y+  +   ++ G  +EA ++F  M+++  C PDS+  + +I I   +  V 
Sbjct: 598 SGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEAN-GCSPDSYICNLIIKILVQQEYVE 656

Query: 280 EAEAMFNEMLEAGFEPN 296
           EA+ +     + G   N
Sbjct: 657 EAQNIIERCRQKGISLN 673


>gi|410110131|gb|AFV61145.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rehmannii]
          Length = 379

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 138 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 197

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 198 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 257

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 258 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 312

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 313 VKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLN 359



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  G+     +   +
Sbjct: 73  PNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 132

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +   
Sbjct: 133 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 192

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  
Sbjct: 193 TLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQI 251

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  ++I  Y +A       R L+ L      P D
Sbjct: 252 LFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 285



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   + ++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN ++Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 64  GEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 182

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SM+ I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 325 ELGITPD 331
             G+  D
Sbjct: 243 SSGVEID 249



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 262 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 317

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+ +  +    VY EM
Sbjct: 318 VFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQXFDKANDVYMEM 377

Query: 218 KE 219
           +E
Sbjct: 378 QE 379


>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 426

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  P+      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPESNVIALVLN 398



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDKAAMLFQKLRSSGVDID 288



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 667

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 127/266 (47%), Gaps = 3/266 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA    +A GL+D  R +    D   +STLI  +G  G FD  L   ++M+   V  +++
Sbjct: 156 RAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQDNVSGDLV 215

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+NL+D   +     +  +I+  +  + ++P+   Y S++  +G+A+   +   + +EM
Sbjct: 216 LYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEM 275

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++  +Q     Y+TLLA+  D     EA  +F +M  ++ C  D  T + MI +      
Sbjct: 276 RDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAK-CPLDLTTCNIMIDVYGQLHM 334

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             EA+ +F  M + G +PN+    +L++ YG+A    + +     +    +  +      
Sbjct: 335 PKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNT 394

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSK 363
           ++N+  +T + E  K    +++ N +
Sbjct: 395 MINIYGKTLEHE--KATNLIQEMNKR 418



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
            K  I PN  S  TL+++YG A  F   ++++  M++  V+ N++TYN +++  G+    
Sbjct: 346 RKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEH 405

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   + +EM   G+ PN  TY++++  + +A   +    ++++++  G+++   LY T+
Sbjct: 406 EKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTM 465

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G    A  +  ++K     +PD+    + I I +  G++ EA  +F +  +A 
Sbjct: 466 IVAYERTGLVAHAKRLLHELK-----RPDNIPRDTAIAILARAGRIEEATWVFRQAFDAR 520

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              ++ V   +I  + K ++  +VV    ++ E+G  PD      +LN
Sbjct: 521 EVKDISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLN 568



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 5/249 (2%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P++  YN LL  + RAK+      ++ EM   GLSP+  TY++L+  +G+    + +L 
Sbjct: 141 RPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLF 200

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
             ++M++  +   + LY+ L+ +   +    +A  IF  +K+S    PD   ++SMI + 
Sbjct: 201 WLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKAS-TITPDLIAYNSMINVF 259

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
                  EA  +  EM +   +P+    ++L+  Y   Q+  + +   + + E     D 
Sbjct: 260 GKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDL 319

Query: 333 RFCGCLLNVMTQ--TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390
             C  +++V  Q   PKE   +L   + K   +   +    L     E D   EA  LF 
Sbjct: 320 TTCNIMIDVYGQLHMPKEA-DRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFR 378

Query: 391 SI-SKDVKK 398
            + SKDV++
Sbjct: 379 LMQSKDVQQ 387



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 114/269 (42%), Gaps = 23/269 (8%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +GKT    K+   +   + R  +    +Y T      +AG ++ A  L+ + R+   RID
Sbjct: 399 YGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRID 458

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              + T+I  Y   G       +  E+K    +P+ I  +  +  + RA R  +   +++
Sbjct: 459 EVLYQTMIVAYERTGLVAHAKRLLHELK----RPDNIPRDTAIAILARAGRIEEATWVFR 514

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           +  D     + + +  ++  + + +   + + V+ +M+E G      +   +L     + 
Sbjct: 515 QAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLNAFGKLR 574

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--- 297
             D+A  ++  M       PD   F  M+++   R      E++F E L++   PN+   
Sbjct: 575 EFDKADALYRQMHEEGCVFPDEVHF-QMLSLYGARKDFVMVESLF-EKLDSN--PNINKK 630

Query: 298 ---FVLTSLIQCYGKAQRTDDVVRALNRL 323
               V+ S+   Y +A R +D  R +NR+
Sbjct: 631 ELHLVVASI---YERADRLNDASRIMNRM 656


>gi|255661214|gb|ACU25776.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 426

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 117/236 (49%), Gaps = 7/236 (2%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   +  N++TYN ++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K   N   D     + I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELKRPNNIPRD-----TAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             ++ V   +I  + K ++  +VV    ++  LG  PD      +LN   +  K E
Sbjct: 352 VKDITVFERMISLFSKYKKYTNVVEVFEKMRGLGYFPDSNVIAVVLNAYGKLHKFE 407



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 101/192 (52%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FDG L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            ++  +G++P+   Y S++  +G+AR   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +        EA+ +F  M + G EPN+  
Sbjct: 128 KRFREALSVFAEMREIK-CLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++ ++K  G+ P+++ Y
Sbjct: 23  GLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSKLKRSGITPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N++++  G+A+   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTMYVENKRFREALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +  Q +  T+++M+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQRKDIVQ-NVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   GI  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRVSGIEID 288



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ + +      D  A++++I ++G A  F    ++  EM+  GV PN ++Y+ LL 
Sbjct: 63  AISIFSKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLT 122

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                KR  +  +++ EM +                                    G+ P
Sbjct: 123 MYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEP 182

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K +  +V  YNT++ +       ++A  + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ +   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 243 QEMQ-NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMIVAYER 301

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 302 AGLVAHAKRLLHELKRPNNIPRD 324



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   DRALSPDRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   ++SMI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSKLKRS-GITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + +R  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 45/96 (46%)

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
           T I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++++M   
Sbjct: 325 TAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMISLFSKYKKYTNVVEVFEKMRGL 384

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           G  P+ N  A +L AYG+    E+   VY EM+++G
Sbjct: 385 GYFPDSNVIAVVLNAYGKLHKFENANGVYMEMQDEG 420


>gi|410110133|gb|AFV61146.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rhodocnemis]
          Length = 345

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 120 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 179

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 180 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 239

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 240 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 294

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 295 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 341



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  G+     +   +
Sbjct: 55  PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 114

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +   
Sbjct: 115 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGK 174

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  
Sbjct: 175 TLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQI 233

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  ++I  Y +A       R L+ L      P D
Sbjct: 234 LFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 267



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 36/231 (15%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           ++   ++++  +K +G  P+++ YN +++  G+AK   + +++  EM   G+ PN  +Y+
Sbjct: 2   DYSKAISIFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 61

Query: 196 SLLRAYGRARYGEDTLSVYREMKE-----------------------------------K 220
           +LL  Y   +   + LSV+ EM+E                                    
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T++SMI I     +  +
Sbjct: 122 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMIMIYGKTLEHEK 180

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 231


>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           pusilla]
          Length = 381

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 138 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 197

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 198 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMI 257

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 258 VXYERAGLIAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 312

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 313 VKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLN 359



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 182

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SM+ I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 325 ELGITPD 331
             G+  D
Sbjct: 243 STGVEID 249



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 116/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 83

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 84  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 143

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 144 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 203

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++   G E +  +  ++I  Y +
Sbjct: 204 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXYER 262

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 263 AGLIAHAKRLLHELKRPDNIPRD 285



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG +  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 262 RAGLIAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 317

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+ +  +    VY EM
Sbjct: 318 VFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 377

Query: 218 KEKG 221
           +E G
Sbjct: 378 QEVG 381


>gi|242053311|ref|XP_002455801.1| hypothetical protein SORBIDRAFT_03g025430 [Sorghum bicolor]
 gi|241927776|gb|EES00921.1| hypothetical protein SORBIDRAFT_03g025430 [Sorghum bicolor]
          Length = 642

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 127/262 (48%), Gaps = 4/262 (1%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
            E+   +  ++S+  K  G + +    L VY  +K   +K ++   N++L  + +  R  
Sbjct: 107 QEREMTNAASYSSYFKYLGLSRDPARALQVYGAIKDQTMKVHVSVCNSVLGCLVKNGRLD 166

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTL 232
               +Y EM   GLSP+  TY++LL    + + G    + +  +MK +G+Q+ + +Y TL
Sbjct: 167 SSFKLYDEMIREGLSPDPFTYSTLLSGCMKLKQGYTKAMELINDMKSRGLQMDIVIYGTL 226

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           LA+CA   Y +EA   F+ MK   +C P+ + +SS++   S      +AE +  ++  +G
Sbjct: 227 LAICASHNYCEEAEVYFQKMKDEGHC-PNLFHYSSLLNAYSENSDYEKAELLMKDLRSSG 285

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
             PN  +LT+L++ Y K    +     L  L   G   D+     L++ + +  K +  K
Sbjct: 286 LTPNKVILTTLLKVYSKGGLFEKAKELLTELEASGFAQDEMPYCILIDGLVKGGKIQEAK 345

Query: 353 LV--ECVEKSNSKLGYVVKLLL 372
           ++  E  EK     GY   +++
Sbjct: 346 ILFNEMKEKGVKSDGYAFSIMI 367



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 151/361 (41%), Gaps = 41/361 (11%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPN 155
            + G ++ +F LYD    E    DP  +STL+         +   + +  +MK+ G++ +
Sbjct: 160 VKNGRLDSSFKLYDEMIREGLSPDPFTYSTLLSGCMKLKQGYTKAMELINDMKSRGLQMD 219

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ Y  LL          + +  +++M D G  PN   Y+SLL AY      E    + +
Sbjct: 220 IVIYGTLLAICASHNYCEEAEVYFQKMKDEGHCPNLFHYSSLLNAYSENSDYEKAELLMK 279

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +++  G+  +  +  TLL + +  G  ++A E+  ++++S   Q D   +  +I      
Sbjct: 280 DLRSSGLTPNKVILTTLLKVYSKGGLFEKAKELLTELEASGFAQ-DEMPYCILIDGLVKG 338

Query: 276 GKVSEAEAMFNEMLEAG------------------------------FEP-----NLFVL 300
           GK+ EA+ +FNEM E G                              FE      +L +L
Sbjct: 339 GKIQEAKILFNEMKEKGVKSDGYAFSIMISALHRGGHHEESKQLAKEFESENASYDLVML 398

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEK 359
            + ++ Y      + V+R L ++ EL I+PD+     L+     +    L  K VE +  
Sbjct: 399 NTSLRTYCSTNDMESVMRMLKKMDELNISPDNITFNTLIRYFCNSKVYHLAYKTVEDMHT 458

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI---SKDVKKAYCNCLIDLCVNLNLLEN 416
              +L   +   +  Q  +G F  EA  L+N +    + V K+     + + V   LL+ 
Sbjct: 459 KGHQLNEELCSHVMVQLGKGGFPSEAFSLYNMLRYSKRTVHKSLHEKALGILVAAELLKE 518

Query: 417 A 417
           A
Sbjct: 519 A 519



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 6/271 (2%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + +++  G    +D    V+E M+   +  N  +Y++    +G ++ P +   +Y  + D
Sbjct: 84  NIILRHCGDTRRWDDLSKVFEWMQEREM-TNAASYSSYFKYLGLSRDPARALQVYGAIKD 142

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV--GYT 242
             +  + +   S+L    +    + +  +Y EM  +G+      Y+TLL+ C  +  GYT
Sbjct: 143 QTMKVHVSVCNSVLGCLVKNGRLDSSFKLYDEMIREGLSPDPFTYSTLLSGCMKLKQGYT 202

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +A E+  DMKS    Q D   + +++ IC+      EAE  F +M + G  PNLF  +S
Sbjct: 203 -KAMELINDMKS-RGLQMDIVIYGTLLAICASHNYCEEAEVYFQKMKDEGHCPNLFHYSS 260

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVECVEKSN 361
           L+  Y +    +     +  L   G+TP+      LL V ++    E  K L+  +E S 
Sbjct: 261 LLNAYSENSDYEKAELLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKAKELLTELEASG 320

Query: 362 SKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
                +   +L +  ++G   +EA  LFN +
Sbjct: 321 FAQDEMPYCILIDGLVKGGKIQEAKILFNEM 351



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/226 (19%), Positives = 95/226 (42%), Gaps = 1/226 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G ++ A  L++  + +  + D  AFS +I      G+ +    + +E ++     ++
Sbjct: 336 VKGGKIQEAKILFNEMKEKGVKSDGYAFSIMISALHRGGHHEESKQLAKEFESENASYDL 395

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +  N  L T         V  + K+M +  +SP+  T+ +L+R +  ++          +
Sbjct: 396 VMLNTSLRTYCSTNDMESVMRMLKKMDELNISPDNITFNTLIRYFCNSKVYHLAYKTVED 455

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  KG QL+  L + ++      G+  EAF ++  ++ S+     S    ++  + +   
Sbjct: 456 MHTKGHQLNEELCSHVMVQLGKGGFPSEAFSLYNMLRYSKRTVHKSLHEKALGILVAAE- 514

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            + EA  +  +  +     +L          G     +DV++ALNR
Sbjct: 515 LLKEAYIVVKDNADLISPASLEKFAKSFMVSGNINLINDVMKALNR 560


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 171/394 (43%), Gaps = 47/394 (11%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYD---TRAGNVEMAFGLYDRARNEKWRIDPNAFS 125
           K+G + ++Y ++  K    +K+   S     ++AGN E A  L ++  NE  + D + +S
Sbjct: 579 KSGRAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYS 638

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
            L++        +  L++ ++M   GVK N++ Y  ++  M +  +    K+++ EM  +
Sbjct: 639 VLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISS 698

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G  P+  TY   + +Y +    E+   +  EM+  G+   V  YN  +  C  +GY D A
Sbjct: 699 GHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCA 758

Query: 246 FEIFEDMKSSENCQPDSWTF----SSMITICSCRGKVSEAEAMFN------------EML 289
           F   + M  + +C+P+ WT+       + +        +   M+N             M+
Sbjct: 759 FSTLKRMIDA-SCEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMV 817

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF------CGCLLNVMT 343
           + G  P     +S+I  + KA R ++    L+ +    I+P++        C C + +  
Sbjct: 818 KHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLF- 876

Query: 344 QTPKEELGKLVEC-VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCN 402
           +     +  ++EC  +       Y++  L +    EGD+ K             K  +C+
Sbjct: 877 EKAASFVTNMIECGFQPHLESYHYLITGLCD----EGDYDK------------AKALFCD 920

Query: 403 CLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436
            L+++  N N  E A K+L  GL    + DI S+
Sbjct: 921 -LLEMDYNHN--EVAWKILNDGLLKAGHVDICSQ 951



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 2/247 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++ +A   +   R     +D    + L+  Y   G+      +   M  +G + N  
Sbjct: 195 KEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNEY 254

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L+  +   +   +   +   M  +G SPN +TY  L+R   +     D   +  EM
Sbjct: 255 SYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEM 314

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+  SV  YN ++      G   +A  I + +     C PD WT++S+I    C GK
Sbjct: 315 PRRGVVPSVWTYNAMIDGYCKSGRLKDALGI-KTLMEGNGCNPDDWTYNSLIH-GLCGGK 372

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             EAE + N  +  GF P +   T++I  Y KA++ DD +R  + +       D +  G 
Sbjct: 373 PDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGV 432

Query: 338 LLNVMTQ 344
           L++V+ +
Sbjct: 433 LISVLIK 439



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 36/226 (15%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ +I  Y  A   D  L V   M +   K ++  Y  L+  + +  R  + K    E+ 
Sbjct: 395 FTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIF 454

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            NGLSPN   Y S++ AY +                                   VG   
Sbjct: 455 ANGLSPNVVIYTSIIDAYCK-----------------------------------VGKVG 479

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E+F+ +   E C+P++WT+SS+I       K+ +A A+  +M E G  P +   T+L
Sbjct: 480 AALEVFK-LTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTL 538

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           IQ   K    D+  R    + + G+TPD++    L + + ++ + E
Sbjct: 539 IQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAE 584



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/282 (19%), Positives = 112/282 (39%), Gaps = 70/282 (24%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++++I  Y   G     L V++  +  G +PN  TY++L+  + + ++  +  
Sbjct: 458 LSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAM 517

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 235
            +  +M ++G++P   TY +L++   +    ++   ++  M++ G+      YN L  A+
Sbjct: 518 ALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDAL 577

Query: 236 C-------------------------------ADVGYTDEAFEIFEDMKSSENCQPDSWT 264
           C                               +  G T+ A  + E M  +E C+ DS T
Sbjct: 578 CKSGRAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKM-VNEGCKADSHT 636

Query: 265 FSSMI-TICSCR----------------------------------GKVSEAEAMFNEML 289
           +S ++  +C  +                                  GK   A++MFNEM+
Sbjct: 637 YSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMI 696

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +G +P+    T  I  Y K  R ++    +  +   G+ PD
Sbjct: 697 SSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPD 738



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 99/232 (42%), Gaps = 4/232 (1%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           K ++D  A+  LI +           +   E+ A G+ PN++ Y +++D   +  +    
Sbjct: 422 KCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAA 481

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             ++K     G  PN  TY+SL+    + +     +++  +M+E G+   V  Y TL+  
Sbjct: 482 LEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQG 541

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
                  D AF +FE M+ +    PD   + +++T   C  K   AE  ++ +++ G   
Sbjct: 542 QCKKHEFDNAFRLFEMMEQN-GLTPDEQAY-NVLTDALC--KSGRAEEAYSFLVKKGVVL 597

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
                TSL+  + KA  T+     + ++   G   D      LL  + +  K
Sbjct: 598 TKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKK 649



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 100/249 (40%), Gaps = 47/249 (18%)

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT---YNNLLDTMGRAKRPWQVKTIYKEM 182
           ++I   GTA +    ++  + ++  G K   ++   YN  L ++ R      +  +Y ++
Sbjct: 115 SMISCSGTAEDMREAVDAIQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEHMGKLYSQL 174

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSV----YREMKEKGMQLSVTLYNTLLAMCAD 238
              GL P+  TY +++ AY +    E +L++    +R ++E GM++     N LL     
Sbjct: 175 VQEGLLPDTVTYNTMIMAYCK----EGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCR 230

Query: 239 VG-----------------------YT------------DEAFEIFEDMKSSENCQPDSW 263
            G                       YT             EA  +   M   + C P+  
Sbjct: 231 TGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLL-MMLQDGCSPNLH 289

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T++ +I      G++ +A  + +EM   G  P+++   ++I  Y K+ R  D +     +
Sbjct: 290 TYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLM 349

Query: 324 PELGITPDD 332
              G  PDD
Sbjct: 350 EGNGCNPDD 358


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 7/235 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA   E+ F     +   K+  D   +++L+  +  AG+      V+ +MK  GVKPN+ 
Sbjct: 228 RASEAELFFD----SLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVY 283

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ ++D++ R  +  +   ++ EM D G  PN  T+ SL+R + +A   E  L VY +M
Sbjct: 284 TYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQM 343

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           K  G       YN L+ + C D    DEA ++ + M   +   P++ TF+S+    +   
Sbjct: 344 KRLGCAADTISYNFLIESHCKDENL-DEAVKVLDTM-VKKGVAPNASTFNSIFGCIAELH 401

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            V+ A  M+ +M E    PN      L++ +  ++  D V++    + E  + P+
Sbjct: 402 DVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPN 456



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 113/212 (53%), Gaps = 4/212 (1%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P  ++ +I L G   +FD   ++ + MK+ GV+  + T++ L+    RA    +    + 
Sbjct: 143 PEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFN 202

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
            M D G  P+  +++ ++ +  + R   +    +  +K K  +  V +Y +L+      G
Sbjct: 203 RMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHK-FEPDVIVYTSLVHGWCRAG 261

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              +A E+F DMK +   +P+ +T+S +I ++C C G+++ A  +F+EM++AG +PN   
Sbjct: 262 DIAKAEEVFSDMKEA-GVKPNVYTYSIVIDSLCRC-GQITRAHDVFSEMIDAGCDPNAVT 319

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SL++ + KA RT+ V++  N++  LG   D
Sbjct: 320 FNSLMRVHVKAGRTEKVLQVYNQMKRLGCAAD 351



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 93/197 (47%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG  E    +Y++ +      D  +++ LI+ +    N D  + V + M   GV PN 
Sbjct: 328 VKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNA 387

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T+N++   +           +Y +M +    PN  TY  L+R +  ++  +  L + +E
Sbjct: 388 STFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKE 447

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E  ++ +V  Y  L+ M  + G+ + A+ + ++M   +  +P+   + +++ +    G
Sbjct: 448 MDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAG 507

Query: 277 KVSEAEAMFNEMLEAGF 293
           ++ + E +  +M+  GF
Sbjct: 508 QLKKHEELVEKMVARGF 524



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 93/198 (46%), Gaps = 16/198 (8%)

Query: 159 YNNLLDTMGRAKR---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           YN ++D  G+ +     W +  +   M   G+    +T++ L+R Y RA    + +  + 
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDL---MKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFN 202

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M++ G +     ++ +++         EA   F+ +K     +PD   ++S++      
Sbjct: 203 RMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLK--HKFEPDVIVYTSLVHGWCRA 260

Query: 276 GKVSEAEAMFNEMLEAGFEPNLF----VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G +++AE +F++M EAG +PN++    V+ SL +C G+  R  DV    + + + G  P+
Sbjct: 261 GDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRC-GQITRAHDV---FSEMIDAGCDPN 316

Query: 332 DRFCGCLLNVMTQTPKEE 349
                 L+ V  +  + E
Sbjct: 317 AVTFNSLMRVHVKAGRTE 334


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 153/316 (48%), Gaps = 12/316 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ L++ +   G       V++EM+   V+P ++T+N L+  M RA+    V  +YKEM+
Sbjct: 189 FNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLISGMCRARDLDAVDGLYKEMS 247

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D G+ P+  TY +L++ + R    E+ + ++ EM++ G+  +  ++ TL+      G  +
Sbjct: 248 DVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVN 307

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
              ++++DM+      PD   +++++  +C  R  +  AE++  EM  AG +P+    T+
Sbjct: 308 AGMDLYQDMR-VRGVMPDLVAYNALVNGLCRAR-NLKAAESIVEEMKNAGLKPDKVTYTT 365

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-----EELGKLVE-C 356
           LI    K  + D  +    ++ E  ++ D+     L++ +++  +       L +++E  
Sbjct: 366 LIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAA 425

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLEN 416
           +E  N+    V+     + D++  FK    E+ N   K     Y   +  LC  L  ++N
Sbjct: 426 LEPDNTTYTMVIDAFCRKGDVKTGFKL-LKEMQNKGKKPGVVTYNVIMNGLC-KLGQMKN 483

Query: 417 ACKLLELGLTLEVYTD 432
           A  LL   L + V  D
Sbjct: 484 ADMLLHAMLNIGVSPD 499



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 123/245 (50%), Gaps = 5/245 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R G +E A  +++  R+    ++PNA  F+TLI  +   GN +  +++Y++M+  GV P+
Sbjct: 267 RTGRMENAVKMFNEMRDTG--VNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPD 324

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ YN L++ + RA+     ++I +EM + GL P+  TY +L+    +    +  + + +
Sbjct: 325 LVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQ 384

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M EK + L    Y  L++  +  G   +A  +  +M  +   +PD+ T++ +I     +
Sbjct: 385 KMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAA-LEPDNTTYTMVIDAFCRK 443

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G V     +  EM   G +P +     ++    K  +  +    L+ +  +G++PDD   
Sbjct: 444 GDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITY 503

Query: 336 GCLLN 340
             LL+
Sbjct: 504 NILLD 508



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 1/210 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA +++   GLY    +   + D   +  LIK +   G  +  + ++ EM+  GV PN +
Sbjct: 232 RARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAV 291

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  L+D   +         +Y++M   G+ P+   Y +L+    RAR  +   S+  EM
Sbjct: 292 VFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEM 351

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G++     Y TL+  C   G  D A +I + M   E    D  T++++I+  S  G+
Sbjct: 352 KNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKE-VSLDEVTYTALISGLSKAGR 410

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
             +AE +  EM+EA  EP+    T +I  +
Sbjct: 411 PVDAERVLREMMEAALEPDNTTYTMVIDAF 440



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 4/207 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA N++ A  + +  +N   + D   ++TLI      G  D  +++ ++M    V  + +
Sbjct: 337 RARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEV 396

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  + +A RP   + + +EM +  L P+  TY  ++ A+ R    +    + +EM
Sbjct: 397 TYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEM 456

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + KG +  V  YN ++     +G    A  +   M +     PD  T++ ++      GK
Sbjct: 457 QNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNI-GVSPDDITYNILLDGQCKHGK 515

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           V+ +E + +     G  P+  V TSLI
Sbjct: 516 VANSEELES---SKGMVPDFAVYTSLI 539



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 2/166 (1%)

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
           M R     +  T Y ++ D G++P    +  L+R + R         V+ EM+ + +Q +
Sbjct: 161 MSRLPSTPEAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMR-RSVQPT 219

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           V  +NTL++        D    ++++M S    +PD +T+ ++I      G++  A  MF
Sbjct: 220 VVTFNTLISGMCRARDLDAVDGLYKEM-SDVGVKPDVYTYGALIKGFCRTGRMENAVKMF 278

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           NEM + G  PN  V T+LI  + K    +  +     +   G+ PD
Sbjct: 279 NEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPD 324


>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 426

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+      I I +  G+  EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDIAIHILAGAGRXEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +VV   +++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|428179078|gb|EKX47950.1| hypothetical protein GUITHDRAFT_136922 [Guillardia theta CCMP2712]
          Length = 714

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 119/234 (50%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   + +A  L+  A+    R D   +++L+ +Y   G +    ++  E++   V  ++I
Sbjct: 248 RQNTLTIAQILFAEAKAAGLRPDIVTYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVI 307

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+ T  + ++      +Y++M +  + PN  TY SL+ A  RA       + + +M
Sbjct: 308 TYSTLISTFAKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDM 367

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+  +V  Y+T++A C        AF++F +M   E   PD  TFS+++++C    +
Sbjct: 368 QAQGISPNVVTYSTMIASCRSKDNWVTAFDLFLEMIRKE-IPPDPMTFSALLSVCQHSKQ 426

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +A  +   M +AG + N+ + ++++   G+A R DD  R L+     GI P+
Sbjct: 427 WEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQAGRLDDAFRILDECKRDGIKPN 480



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 20/245 (8%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT---------MGRAK 170
           D   FSTLI L    G +D    + EEM A  V PN+ T+N L+           M R +
Sbjct: 189 DVFTFSTLISLCDRCGKYDEAFALKEEMDAKNVSPNIYTFNALIAVCKNSLATSLMSRKR 248

Query: 171 RPWQ--VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
           +      + ++ E    GL P+  TY SLL  Y      +++  +  E++++ +   V  
Sbjct: 249 QNTLTIAQILFAEAKAAGLRPDIVTYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVIT 308

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y+TL++  A       A E++E M   +   P+  T++S+I  C      S+A A F++M
Sbjct: 309 YSTLISTFAKTRKYSLAIEMYEKMMERQ-VMPNVITYNSLIFACLRANNFSQAFAFFDDM 367

Query: 289 LEAGFEPNLFVLTSLI-QCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQ 344
              G  PN+   +++I  C  K    D+ V A +   E+    I PD      LL+V   
Sbjct: 368 QAQGISPNVVTYSTMIASCRSK----DNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQH 423

Query: 345 TPKEE 349
           + + E
Sbjct: 424 SKQWE 428



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +AG ++ AF + D  + +   I PN   F+ LI     A + D    V E MK   V PN
Sbjct: 458 QAGRLDDAFRILDECKRDG--IKPNVIMFTALIHACKVARDLDRAFRVLELMKEDHVTPN 515

Query: 156 MITYNNLLDT---MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           ++T+N LL T   +G +   +QV  + +E    G   N  T+ +L++   R+   +    
Sbjct: 516 LVTFNVLLGTCEVVGNSTCAFQVVGLLQEY---GFRANLQTFNTLIKTCVRSHEWQKAFE 572

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK-SSENC-------QPDSWT 264
           VY +M+ + ++ S++ +N L     + G    A ++  DM+  +E          P    
Sbjct: 573 VYSQMQLQRIRPSLSTFNALSMAAEEGGDWRRAIDVMVDMRIKTEKILIRMAGHTPSVQA 632

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++S+I+ C       +A  ++  M  +G   N+     +I      ++  +V++ +N + 
Sbjct: 633 YNSLISACVKSSNYQKAFDVYKGMKTSGVRANIVTYNLIISILSGQRKLSEVLKVINEMK 692

Query: 325 ELGITPDDRFCGCLLNVM 342
           +  +TPD      +++ +
Sbjct: 693 QEEVTPDSETIALMIDAV 710



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 110/224 (49%), Gaps = 16/224 (7%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           + + +   K ++    F+  I+     G++   + +   M+  GV+P++++YN +L  + 
Sbjct: 73  MREESERRKIKLSSLPFNACIRALERMGDWREAVAILNIMEKDGVEPDIVSYNTVLSALR 132

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            +     V  + K M +  +SP+  ++ + L A  R    E  +++   M E  ++  V 
Sbjct: 133 HSPDIQNVFVMLKRMREK-VSPDIVSFNTALAACQRQCDWESGVAILEMMSEDQIERDVF 191

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC-----------RG 276
            ++TL+++C   G  DEAF + E+M  ++N  P+ +TF+++I +C             + 
Sbjct: 192 TFSTLISLCDRCGKYDEAFALKEEM-DAKNVSPNIYTFNALIAVCKNSLATSLMSRKRQN 250

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVV 317
            ++ A+ +F E   AG  P++    SL+  Y   GK + + D++
Sbjct: 251 TLTIAQILFAEAKAAGLRPDIVTYNSLLGVYMEMGKWKESYDIL 294



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 121/269 (44%), Gaps = 16/269 (5%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF L+     ++   DP  FS L+ +   +  ++  ++V E M+  G++ N+  Y+ ++ 
Sbjct: 395 AFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVH 454

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G+A R      I  E   +G+ PN   + +L+ A   AR  +    V   MKE  +  
Sbjct: 455 VCGQAGRLDDAFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLELMKEDHVTP 514

Query: 225 SVTLYNTLLAMCADVGYTDEAFEI---FEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++  +N LL  C  VG +  AF++    ++     N Q    TF+++I  C    +  +A
Sbjct: 515 NLVTFNVLLGTCEVVGNSTCAFQVVGLLQEYGFRANLQ----TFNTLIKTCVRSHEWQKA 570

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             ++++M      P+L    +L      A+   D  RA++ + ++ I  +      L+ +
Sbjct: 571 FEVYSQMQLQRIRPSLSTFNALSMA---AEEGGDWRRAIDVMVDMRIKTE----KILIRM 623

Query: 342 MTQTPK-EELGKLVE-CVEKSNSKLGYVV 368
              TP  +    L+  CV+ SN +  + V
Sbjct: 624 AGHTPSVQAYNSLISACVKSSNYQKAFDV 652


>gi|410110115|gb|AFV61137.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hederifolia]
          Length = 364

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 120 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHE 179

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 180 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 239

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 240 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 294

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 295 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 341



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 6   AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 65

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 66  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 125

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 126 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANNLI 185

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 186 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 244

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 245 AGLVAHAKRLLHELKRPDNIPRD 267



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 96/196 (48%), Gaps = 1/196 (0%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           ++   ++++  +K  G  P+++ YN +++  G+AK   + +++  EM   G+ PN  +Y+
Sbjct: 2   DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 61

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +LL  Y   +   + LSV+ EM+E    L +T  N ++ +   +G   EA ++F  M+  
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
              +P+  ++++++ +        EA  +F  M     E N+    S++  YGK    + 
Sbjct: 122 -GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEK 180

Query: 316 VVRALNRLPELGITPD 331
               +  +   GI P+
Sbjct: 181 ANNLIQEMQSRGIEPN 196



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 244 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 299

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 300 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 359

Query: 218 KEKG 221
           +E G
Sbjct: 360 QEVG 363


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 104/216 (48%), Gaps = 1/216 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  +Y R + E+ R +   ++ +I +YG +      + ++ EM++IG K N+ TY  L++
Sbjct: 276 AVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVN 335

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R     + + ++++M   G  P+   Y +L+ AY RA + +    ++  M+  G + 
Sbjct: 336 AFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEP 395

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               YN L+      G   EA   FE +K  +   P   +   +++  +  G V   E +
Sbjct: 396 DRASYNILVDAYGRAGLHREAEATFESLK-QQGMAPTMKSHMLLLSAHARSGNVGRCEQV 454

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
             ++ ++G  P+ F L +++  Y +A R DD+ R L
Sbjct: 455 MAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERLL 490



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 1/179 (0%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P++I YN L+D  GR ++  + ++IY  + +    P  +TYA LLRAY  AR       
Sbjct: 184 RPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEG 243

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           V  EM+E G+  S T+YN  L        T +A E+++ MK  E C+ ++ T++ MI + 
Sbjct: 244 VISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMK-KERCRTNTETYTLMINVY 302

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               +   A  +FNEM   G + N+   T+L+  + +    +       ++ + G  PD
Sbjct: 303 GKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPD 361



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 1/209 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L++ Y  A +      V  EM+  G+ P+   YN  LD + +A+   +   +Y+ 
Sbjct: 223 DTYALLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQR 282

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M       N  TY  ++  YG+++     + ++ EM+  G + ++  Y  L+   A  G 
Sbjct: 283 MKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGL 342

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A E+FE M+ + + +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 343 CEKAEEVFEQMQQAGH-EPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYN 401

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
            L+  YG+A    +       L + G+ P
Sbjct: 402 ILVDAYGRAGLHREAEATFESLKQQGMAP 430



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 1/215 (0%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           +R D   ++ LI  YG     +   ++Y  +      P   TY  LL     A+   + +
Sbjct: 183 FRPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAE 242

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM ++G+ P+   Y + L    +AR     + VY+ MK++  + +   Y  ++ + 
Sbjct: 243 GVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVY 302

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                   A +IF +M+S   C+ +  T+++++   +  G   +AE +F +M +AG EP+
Sbjct: 303 GKSKQPMSAMKIFNEMQSI-GCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPD 361

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++   +L++ Y +A          + +  +G  PD
Sbjct: 362 VYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPD 396



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/274 (18%), Positives = 113/274 (41%), Gaps = 8/274 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G  E A  ++++ +      D  A++ L++ Y  AG   G   ++  M+ +G +P+ 
Sbjct: 338 AREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDR 397

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN L+D  GRA    + +  ++ +   G++P   ++  LL A+ R+        V  +
Sbjct: 398 ASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQ 457

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           + + G++      N +L   A  G  D+   +   M  + +   D  + +  +   +  G
Sbjct: 458 LHKSGLRPDTFALNAMLHAYARAGRLDDMERLLAAMDLAGS--ADVGSHNVAVNAYARAG 515

Query: 277 KVSEAEAMFNEML-----EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +   EA F  +      + G + ++   TS +  Y + +     +     + + G  PD
Sbjct: 516 YLGRMEAAFEGIRRRKGKKGGIDADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPD 575

Query: 332 DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 364
                 L+   +   + E++  +V  + K    L
Sbjct: 576 AGTAKVLMAACSDERQVEQVAAIVRSMHKEAKTL 609


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 2/225 (0%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           K  ++   F  +++ Y  A   +  +  +  M    V PN+  +N LL  + ++K   + 
Sbjct: 85  KRMVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKA 144

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + I+  + D    P+  TY+ LL  +G+         ++REM   G +  +  Y  ++ +
Sbjct: 145 QEIFDSIKDR-FVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDV 203

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  DEA  I  +M S+  C+P  + +S ++       ++ +A + F EM   G EP
Sbjct: 204 LCKAGRVDEALGIVNEMDSTV-CKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEP 262

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           ++ V  +LI  + KA R  +V R LN +   G+TP+ R    +L+
Sbjct: 263 DVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILS 307



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 126/293 (43%), Gaps = 38/293 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++ NV  A  ++D  + +++  D   +S L++ +G   N      ++ EM + G +P+++
Sbjct: 137 KSKNVRKAQEIFDSIK-DRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIV 195

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D + +A R  +   I  EM      P    Y+ L+  YG     ED +S + EM
Sbjct: 196 TYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEM 255

Query: 218 KEKGMQLSVTLYNTLLAM------------------CADV-----------------GYT 242
           +  G++  V +YN L+                    C  V                 G T
Sbjct: 256 ENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGET 315

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           DEA+ +F  ++  + C+PD+ T++ MI +   R ++ +A  ++  M    F P++     
Sbjct: 316 DEAYRVF--LRMIKVCEPDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQV 373

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 355
           LI    +          L  + E GI P     G L  ++ +  +E++ K ++
Sbjct: 374 LINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGREDVLKFLQ 426



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 38/240 (15%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R D   +  ++ +   AG  D  L +  EM +   KP    Y+ L+ T G   R     +
Sbjct: 191 RPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVS 250

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
            + EM +NG+ P+   Y +L+ A+ +A   ++   V  EM  KG+  +   +N +L+   
Sbjct: 251 TFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLI 310

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR---------------------- 275
             G TDEA+ +F  ++  + C+PD+ T++ MI +   R                      
Sbjct: 311 GRGETDEAYRVF--LRMIKVCEPDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSM 368

Query: 276 -------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
                        G V++A  +  EM+E G  P+      L Q   K  R +DV++ L +
Sbjct: 369 HTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGR-EDVLKFLQK 427


>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia seriphioides]
          Length = 416

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 179 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 238

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 239 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 298

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 299 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 353

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 354 VKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSDVIALVLN 400



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 25  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 84

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM  +G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 85  NAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVENKKFLEALSVFSEMRE 144

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 145 VKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 204

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SMI I     +  +A  +  EM   G EPN    +++I
Sbjct: 205 AIHLFRLMQ-RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTII 263

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 264 SIWGKVGKLDRAAMLFQKLRSSGVEID 290



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 10  DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 69

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  +   Y+TLL M  + 
Sbjct: 70  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVEN 129

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 130 KKFLEALSVFSEMREVK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 188

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 189 YNTLLRVYGDAE 200



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 65  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLT 124

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 125 MYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 184

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 185 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 244

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 245 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 303

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 304 AGLVAHAKRLLHELKRPDNIPRD 326



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM    LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   + 
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 60

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +A  IF  +K S    PD   +++MI +        EA ++ +EM  +G  PN    
Sbjct: 61  DYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASY 119

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 120 STLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQ 163


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
           R G +  A  L DR   +  +     + T++      G+    LN+  +M+ +  + PN+
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y+ ++D++ +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +E
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E+ +   V  YN L+      G   EA E++++M       P++ T+SSMI     + 
Sbjct: 316 MLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQN 374

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++  AE MF  M   G  PNL    +LI  Y  A+R DD +  L+ + E G+  D
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 114/245 (46%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++   LY +   ++ R D  +F+ LIK + +       L+ + ++  +G+ P+++T+N L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTL 155

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L  +    R  +   ++ +M +    PN  T+ +L+    R     + +++   M E G+
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           Q +   Y T++      G T  A  +   M+   +  P+   +S++I      G+ S+A+
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            +F EM E G  P+LF   S+I  +  + R  D  + L  + E  I+PD      L+N  
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 343 TQTPK 347
            +  K
Sbjct: 336 VKEGK 340



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 47/261 (18%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +I P+   ++ LI  +   G F     +Y+EM   G+ PN ITY++++D   +  R    
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-- 233
           + ++  M   G SPN  T+ +L+  Y  A+  +D + +  EM E G+    T YNTL+  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 234 --------------------AMCADV-------------GYTDEAFEIFEDMKSSE---- 256
                                +C D+             G   +A E+F+ M+ S+    
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 257 ------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
                   +PD  T++ +I+     GK  EAE ++ EM   G  P+    +S+I    K 
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 311 QRTDDVVRALNRLPELGITPD 331
            R D+  +  + +     +P+
Sbjct: 560 SRLDEATQMFDSMGSKSFSPN 580



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 14/224 (6%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TLI  Y  A   D  + +  EM   G+  +  TYN L+              +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----------KGMQLSVT 227
            +EM  +GL P+  T  +LL         +D L +++ M++            G++  V 
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQ 512

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YN L++   + G   EA E++E+M       PD+ T+SSMI     + ++ EA  MF+ 
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPH-RGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M    F PN+   T+LI  Y KA R DD +     +   GI  +
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 1/169 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ LI      G F     +YEEM   G+ P+ ITY++++D + +  R  +   ++
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M     SPN  T+ +L+  Y +A   +D L ++ EM  +G+  +   Y TL+     V
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           G  + A +IF++M SS    PD+ T  +M+T    + ++  A AM  ++
Sbjct: 630 GNINGALDIFQEMISS-GVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 18/261 (6%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  A  L+ +      R +   F+TL+      G     + + + M   G++P  ITY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 162 LLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           ++D M +         + ++M + + + PN   Y++++ +  +     D  +++ EM+EK
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+   +  YN+++      G   +A ++ ++M   +   PD  T++++I      GK  E
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK-ISPDVVTYNALINAFVKEGKFFE 343

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------D 332
           AE +++EML  G  PN    +S+I  + K  R D        +   G +P+        D
Sbjct: 344 AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 333 RFCGC--------LLNVMTQT 345
            +CG         LL+ MT+T
Sbjct: 404 GYCGAKRIDDGMELLHEMTET 424



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 16/252 (6%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV- 175
           D   ++TLI  +   G+ +  L++ +EM + G+ P+++T + LLD +   G+ K   ++ 
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 176 KTIYKEMTD-------NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
           K + K   D       NG+ P+  TY  L+          +   +Y EM  +G+      
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y++++         DEA ++F+ M  S++  P+  TF+++I      G+V +   +F EM
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PK 347
              G   N     +LI  + K    +  +     +   G+ PD      + N++T    K
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSK 664

Query: 348 EELGKLVECVEK 359
           EEL + V  +EK
Sbjct: 665 EELKRAVAMLEK 676



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D   ++ +  +   F+TLI  Y  AG  D  L ++ EM   G+  N ITY  L+    
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           +         I++EM  +G+ P+  T  ++L
Sbjct: 628 KVGNINGALDIFQEMISSGVYPDTITIRNML 658


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
           R G +  A  L DR   +  +     + T++      G+    LN+  +M+ +  + PN+
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y+ ++D++ +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +E
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E+ +   V  YN L+      G   EA E++++M       P++ T+SSMI     + 
Sbjct: 316 MLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQN 374

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++  AE MF  M   G  PNL    +LI  Y  A+R DD +  L+ + E G+  D
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 113/245 (46%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++   LY +   ++ R D  +F+ LIK + +       L+ + ++  +G+ P+++T+  L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL 155

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L  +    R  +   ++ +M +    PN  T+ +L+    R     + +++   M E G+
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           Q +   Y T++      G T  A  +   M+   +  P+   +S++I      G+ S+A+
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            +F EM E G  P+LF   S+I  +  + R  D  + L  + E  I+PD      L+N  
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 343 TQTPK 347
            +  K
Sbjct: 336 VKEGK 340



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 47/261 (18%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +I P+   ++ LI  +   G F     +Y+EM   G+ PN ITY++++D   +  R    
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-- 233
           + ++  M   G SPN  T+ +L+  Y  A+  +D + +  EM E G+    T YNTL+  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 234 --------------------AMCADV-------------GYTDEAFEIFEDMKSSE---- 256
                                +C D+             G   +A E+F+ M+ S+    
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 257 ------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
                   +PD  T++ +I+     GK  EAE ++ EM   G  P+    +S+I    K 
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 311 QRTDDVVRALNRLPELGITPD 331
            R D+  +  + +     +P+
Sbjct: 560 SRLDEATQMFDSMGSKSFSPN 580



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 14/224 (6%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TLI  Y  A   D  + +  EM   G+  +  TYN L+              +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----------KGMQLSVT 227
            +EM  +GL P+  T  +LL         +D L +++ M++            G++  V 
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQ 512

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YN L++   + G   EA E++E+M       PD+ T+SSMI     + ++ EA  MF+ 
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPH-RGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M    F PN+   T+LI  Y KA R DD +     +   GI  +
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 1/169 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ LI      G F     +YEEM   G+ P+ ITY++++D + +  R  +   ++
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M     SPN  T+ +L+  Y +A   +D L ++ EM  +G+  +   Y TL+     V
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           G  + A +IF++M SS    PD+ T  +M+T    + ++  A AM  ++
Sbjct: 630 GNINGALDIFQEMISS-GVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 18/261 (6%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  A  L+ +      R +   F+TL+      G     + + + M   G++P  ITY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 162 LLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           ++D M +         + ++M + + + PN   Y++++ +  +     D  +++ EM+EK
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+   +  YN+++      G   +A ++ ++M   +   PD  T++++I      GK  E
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK-ISPDVVTYNALINAFVKEGKFFE 343

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------D 332
           AE +++EML  G  PN    +S+I  + K  R D        +   G +P+        D
Sbjct: 344 AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 333 RFCGC--------LLNVMTQT 345
            +CG         LL+ MT+T
Sbjct: 404 GYCGAKRIDDGMELLHEMTET 424



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 16/252 (6%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV- 175
           D   ++TLI  +   G+ +  L++ +EM + G+ P+++T + LLD +   G+ K   ++ 
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 176 KTIYKEMTD-------NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
           K + K   D       NG+ P+  TY  L+          +   +Y EM  +G+      
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y++++         DEA ++F+ M  S++  P+  TF+++I      G+V +   +F EM
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PK 347
              G   N     +LI  + K    +  +     +   G+ PD      + N++T    K
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSK 664

Query: 348 EELGKLVECVEK 359
           EEL + V  +EK
Sbjct: 665 EELKRAVAMLEK 676



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D   ++ +  +   F+TLI  Y  AG  D  L ++ EM   G+  N ITY  L+    
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           +         I++EM  +G+ P+  T  ++L
Sbjct: 628 KVGNINGALDIFQEMISSGVYPDTITIRNML 658


>gi|410110121|gb|AFV61140.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           lupulina]
          Length = 257

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 13  KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 72

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 73  KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMI 132

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 133 VAYERAGLIAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 187

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 188 VKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLN 234



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG +  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 137 RAGLIAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 192

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+ +  +    VY EM
Sbjct: 193 VFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 252

Query: 218 KEKG 221
           +E G
Sbjct: 253 QEVG 256


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1202

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 1/234 (0%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +R G++  A    D    +  + D  A++ LI+ +   G+ +       +MK  GV P++
Sbjct: 773  SRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSV 832

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             TYN L+   GR     +   + KEM DNG  PN  +Y +L+    +     +   V R+
Sbjct: 833  ETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRD 892

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            M+++G+  +V +YN L+  C   G  ++AF   E+M   +  + +  T++++I   S  G
Sbjct: 893  MEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEM-FKKGIELNLVTYNTLIDGLSMNG 951

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            K++EAE M  E+   G +P++F   SLI  Y  A      +     +   GI P
Sbjct: 952  KLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKP 1005



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 102/208 (49%), Gaps = 3/208 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y   GN +    V E MKA  ++P++IT+N LL  + +A      + +  EM 
Sbjct: 625 YNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMK 684

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
           D G  P+  T++ L   Y      +  L VY    + G++++    + LL A+C + G  
Sbjct: 685 DQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKE-GQI 743

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           ++A EI    + ++   P+   +++MI   S +G +  A    + M + G +P+      
Sbjct: 744 EKAEEIL-GREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNC 802

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
           LI+ + +    ++  + +N++   G++P
Sbjct: 803 LIRTFCELGDMENAEQEVNKMKLKGVSP 830



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 138/332 (41%), Gaps = 46/332 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN E +F + +R + +        F+TL+K    AG  +   NV  EMK  G  P+  
Sbjct: 634 KDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAF 693

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 214
           T++ L D      +      +Y+   D+GL  N  T + LL A    G+    E+ L   
Sbjct: 694 TFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILG-- 751

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK----SSENCQPDSWTFSSMIT 270
           REM  KG+  +  LYNT++      GY+ +   +   MK      +  +PD   ++ +I 
Sbjct: 752 REMA-KGLVPNEVLYNTMID-----GYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIR 805

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G +  AE   N+M   G  P++     LI  YG+    D     L  + + G  P
Sbjct: 806 TFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMP 865

Query: 331 DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390
                    NV++       G L+ C+ K +         LLE Q ++ D +        
Sbjct: 866 ---------NVVS------YGTLINCLCKGSK--------LLEAQIVKRDMEDRG----- 897

Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
            +S +V+    N LID C +   +E+A +  E
Sbjct: 898 -VSPNVR--IYNMLIDGCCSKGKIEDAFRFSE 926



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 16/236 (6%)

Query: 112 ARNEKWRIDPNAFSTLIK--------LYGTA-------GNFDGCLNVYEEMKAIGVKPNM 156
            + +++R+  N F  +++        +YG A        +    L ++  MK   + P +
Sbjct: 528 VKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTV 587

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN L+D + + ++    + ++ EM    L P+  TY +L+  Y +    E +  V   
Sbjct: 588 FIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRER 647

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK   ++ S+  +NTLL      G  ++A  +  +MK  +   PD++TFS +    S   
Sbjct: 648 MKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMK-DQGFVPDAFTFSILFDGYSSND 706

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           K   A  ++   +++G + N +  + L+    K  + +     L R    G+ P++
Sbjct: 707 KADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNE 762



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 93/192 (48%), Gaps = 7/192 (3%)

Query: 115  EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
            E   + PN   ++ LI    + G  +      EEM   G++ N++TYN L+D +    + 
Sbjct: 894  EDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKL 953

Query: 173  WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
             + + +  E++  GL P+  TY SL+  Y  A   +  +++Y EMK  G++ ++  Y+ L
Sbjct: 954  AEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLL 1013

Query: 233  LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            +++C     T E  E+ + +    + QPD   ++ ++   +  G + +A  +  +M+E  
Sbjct: 1014 ISLC-----TKEGIELTKKIFGEMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKS 1068

Query: 293  FEPNLFVLTSLI 304
               +     SLI
Sbjct: 1069 IGLDKTTYNSLI 1080



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 138/322 (42%), Gaps = 15/322 (4%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+   RNE      ++ + L+        F   +NV+  +     +P+   Y   + 
Sbjct: 501 AADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQ 560

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              +     +   ++  M  + +SP    Y  L+    + R  +D   ++ EM  + +  
Sbjct: 561 AAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLP 620

Query: 225 SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           S+  YNTL+   C D G  +++F++ E MK ++N +P   TF++++      G V +AE 
Sbjct: 621 SLITYNTLIDGYCKD-GNPEKSFKVRERMK-ADNIEPSLITFNTLLKGLFKAGMVEDAEN 678

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           +  EM + GF P+ F  + L   Y    + D  +       + G+  +   C  LLN + 
Sbjct: 679 VLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALC 738

Query: 344 QTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK----EATELFNSISKDVKK- 398
           +  + E  K  E + +  +K G V   +L    I+G  +K     A    +++ K   K 
Sbjct: 739 KEGQIE--KAEEILGREMAK-GLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKP 795

Query: 399 ---AYCNCLIDLCVNLNLLENA 417
              AY NCLI     L  +ENA
Sbjct: 796 DHLAY-NCLIRTFCELGDMENA 816



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 104/209 (49%), Gaps = 12/209 (5%)

Query: 119  IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            + P+ F+  +LI  Y  AGN   C+ +YEEMK  G+KP + TY+ LL ++   +     K
Sbjct: 968  LKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYH-LLISLCTKEGIELTK 1026

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             I+ EM+   L P+   Y  +L  Y      +   ++ ++M EK + L  T YN+L+   
Sbjct: 1027 KIFGEMS---LQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQ 1083

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEP 295
              VG   E   + ++MK+ E  +P++ T+  +I    C  K    A   + EM E G   
Sbjct: 1084 LKVGKLCEVRSLIDEMKARE-MEPEADTY-DIIVKGHCEMKDYMGAYVWYREMQEKGLLL 1141

Query: 296  NLFV---LTSLIQCYGKAQRTDDVVRALN 321
            ++ +   L S ++   +++  ++V+  +N
Sbjct: 1142 DVCIGDELVSGLKEEWRSKEAENVISEMN 1170



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 106/268 (39%), Gaps = 40/268 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE------------ 145
           +AG VE A  +    +++ +  D   FS L   Y +    D  L VYE            
Sbjct: 669 KAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAY 728

Query: 146 ------------------------EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                                   EM A G+ PN + YN ++D   R       +     
Sbjct: 729 TCSILLNALCKEGQIEKAEEILGREM-AKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDA 787

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G+ P+   Y  L+R +      E+      +MK KG+  SV  YN L+        
Sbjct: 788 MEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYE 847

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVL 300
            D+ F++ ++M+ +    P+  ++ ++I  C C+G K+ EA+ +  +M + G  PN+ + 
Sbjct: 848 FDKCFDLLKEMEDN-GTMPNVVSYGTLIN-CLCKGSKLLEAQIVKRDMEDRGVSPNVRIY 905

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGI 328
             LI       + +D  R    + + GI
Sbjct: 906 NMLIDGCCSKGKIEDAFRFSEEMFKKGI 933


>gi|168055626|ref|XP_001779825.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668737|gb|EDQ55338.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 734

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 2/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           +P  ++ +I+ +   GN   C  V + MK +GV P++ TY  L+D+ GR K P +   ++
Sbjct: 276 NPWHYNLIIREFSRHGNLRSCFKVLDFMKELGVMPDVFTYRVLIDSCGRHKEPSKATIVF 335

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M ++G  PN   Y S++          +    ++ M+  G+   VT YN LL   A  
Sbjct: 336 EKMLNDGFEPNRFVYNSIMNV--NVGNLSEVRRYFQHMQGAGIAADVTSYNILLKAYAAS 393

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A +++  +K +     D   +S++I +        EA  +  +MLEAG  PN+  
Sbjct: 394 GRADLAGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRVKADMLEAGVTPNVVT 453

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            TS+I     A   D   R  + +   G  P+
Sbjct: 454 WTSIIGACATAGLVDQSFREFDEMLNAGCRPN 485



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 52/243 (21%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG------- 151
           AG V+ +F  +D   N   R + N ++ L++    A  FD    ++EE K  G       
Sbjct: 464 AGLVDQSFREFDEMLNAGCRPNVNCYNMLLQACIMASQFDRAFLLFEEWKTTGRMRSYSE 523

Query: 152 ---------------------------------------VKPNMITYNNLLDTMGRAKRP 172
                                                   +PN+ITYN ++   G A   
Sbjct: 524 IFNYSAPLAKTHELITVIPGSLLQSNLGEKIDEDVRLACCRPNIITYNCMMKACGSASE- 582

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +V+++ +EM   GL P+  +++ LL +YG     E       EMK  G +  V  Y +L
Sbjct: 583 -KVRSLMREMRALGLVPDVKSWSILLDSYGSKGDVEGASEALEEMKAAGFKPDVVAYTSL 641

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEML 289
           +  C   G+ ++AF+ F  MK++   +P++ T++S++      G   +V  A A++ EM 
Sbjct: 642 IQACVQAGHLEKAFDYFSKMKAA-GVRPNAVTYNSLLRRHRNYGTLPEVQRALALYEEMR 700

Query: 290 EAG 292
           EAG
Sbjct: 701 EAG 703



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 50/283 (17%)

Query: 96  DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKP 154
           +   GN+      +   +      D  +++ L+K Y  +G  D   ++Y ++K  G V  
Sbjct: 355 NVNVGNLSEVRRYFQHMQGAGIAADVTSYNILLKAYAASGRADLAGDLYAQIKKAGKVTL 414

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++ Y+ L++  G+AK   +   +  +M + G++PN  T+ S++ A   A   + +   +
Sbjct: 415 DVVFYSTLINVFGKAKMWEEALRVKADMLEAGVTPNVVTWTSIIGACATAGLVDQSFREF 474

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN----------------- 257
            EM   G + +V  YN LL  C      D AF +FE+ K++                   
Sbjct: 475 DEMLNAGCRPNVNCYNMLLQACIMASQFDRAFLLFEEWKTTGRMRSYSEIFNYSAPLAKT 534

Query: 258 ----------------------------CQPDSWTFSSMITICSCRGKVSE-AEAMFNEM 288
                                       C+P+  T++ M+  C   G  SE   ++  EM
Sbjct: 535 HELITVIPGSLLQSNLGEKIDEDVRLACCRPNIITYNCMMKAC---GSASEKVRSLMREM 591

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              G  P++   + L+  YG     +    AL  +   G  PD
Sbjct: 592 RALGLVPDVKSWSILLDSYGSKGDVEGASEALEEMKAAGFKPD 634



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 112/281 (39%), Gaps = 52/281 (18%)

Query: 99  AGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +G  ++A  LY + +   K  +D   +STLI ++G A  ++  L V  +M   GV PN++
Sbjct: 393 SGRADLAGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRVKADMLEAGVTPNVV 452

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +++     A    Q    + EM + G  PN N Y  LL+A   A   +    ++ E 
Sbjct: 453 TWTSIIGACATAGLVDQSFREFDEMLNAGCRPNVNCYNMLLQACIMASQFDRAFLLFEEW 512

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF--------------EDMKSSENCQPDSW 263
           K  G   S   Y+ +    A +  T E   +               ED++ +  C+P+  
Sbjct: 513 KTTGRMRS---YSEIFNYSAPLAKTHELITVIPGSLLQSNLGEKIDEDVRLA-CCRPNII 568

Query: 264 TFSSMITICSC---------------------------------RGKVSEAEAMFNEMLE 290
           T++ M+  C                                   +G V  A     EM  
Sbjct: 569 TYNCMMKACGSASEKVRSLMREMRALGLVPDVKSWSILLDSYGSKGDVEGASEALEEMKA 628

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           AGF+P++   TSLIQ   +A   +      +++   G+ P+
Sbjct: 629 AGFKPDVVAYTSLIQACVQAGHLEKAFDYFSKMKAAGVRPN 669



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           SY ++ G+VE A    +  +   ++ D  A+++LI+    AG+ +   + + +MKA GV+
Sbjct: 609 SYGSK-GDVEGASEALEEMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDYFSKMKAAGVR 667

Query: 154 PNMITYNNLL---DTMGRAKRPWQVKTIYKEMTDNG 186
           PN +TYN+LL      G      +   +Y+EM + G
Sbjct: 668 PNAVTYNSLLRRHRNYGTLPEVQRALALYEEMREAG 703


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 3/216 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P+A  ++ LI  Y    N      +++EM A G+KP   TY +LL  + +  R  +  
Sbjct: 392 ISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++K++T  G+ P+   + +L+  +      +    + ++M    +      +NT++   
Sbjct: 452 DLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGH 511

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  +EA E+F++MK     +PD  +F+++I+  S RG + +A  + NEML+ GF P 
Sbjct: 512 CREGKVEEARELFDEMKR-RGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPT 570

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +    +L+Q   K Q  D     L  +   G+TPDD
Sbjct: 571 VLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDD 606



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 115/268 (42%), Gaps = 36/268 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  +++    +  R     ++TLI  +   GN D      +EM   G+ P M 
Sbjct: 303 KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMS 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+  +   +R  + + + KE+ + G+SP+  TY  L+  Y R    +    ++ EM
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICS--- 273
              G++ +   Y +LL + +      EA ++F+ + +SE   PD   F+++I   CS   
Sbjct: 423 LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKI-TSEGVLPDVIMFNALIDGHCSNSN 481

Query: 274 ------------------------------CR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                                         CR GKV EA  +F+EM   G +P+     +
Sbjct: 482 VKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
           LI  Y +     D  R  N + + G  P
Sbjct: 542 LISGYSRRGDIKDAFRVRNEMLDTGFNP 569



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 1/242 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A+ LY      + +     F+ +I +    G      +    M+  GVKPN++TYN +
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +     + R      I   M    + P+  TY SL+    +    E+   ++ EM +KG+
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           + S  +YNTL+    + G  D A   ++D    +   P   T++S+I       +  EAE
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMA-SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            M  E+ E G  P+      LI  Y +           + +   GI P  +    LL+V+
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441

Query: 343 TQ 344
           ++
Sbjct: 442 SK 443



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 104/216 (48%), Gaps = 1/216 (0%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           ++L+ L+      +    +Y EM  + +K ++ T+N +++ + +  +  + K     M  
Sbjct: 190 NSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMET 249

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
           +G+ PN  TY +++  Y  +   E   ++   MK + ++     Y +L++     G  +E
Sbjct: 250 SGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A +IFE+M   +  +P +  ++++I     +G +  A A  +EML+ G  P +    SLI
Sbjct: 310 ASKIFEEM-VQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLI 368

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
                 QRTD+    +  + E GI+PD      L+N
Sbjct: 369 HALFMEQRTDEAECMIKEIQEKGISPDAITYNILIN 404



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 68/144 (47%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           NV+ AF L       K   D   F+T+++ +   G  +    +++EMK  G+KP+ I++N
Sbjct: 481 NVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFN 540

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+    R         +  EM D G +P   TY +L++   + + G+    + +EM  K
Sbjct: 541 TLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSK 600

Query: 221 GMQLSVTLYNTLLAMCADVGYTDE 244
           GM    T Y TL+   A V   DE
Sbjct: 601 GMTPDDTTYFTLIEGIAKVNIPDE 624



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 1/162 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+ +  +E    D   F+ LI  + +  N  G   + ++M  + V P+ +T+N ++    
Sbjct: 453 LFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHC 512

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R  +  + + ++ EM   G+ P+  ++ +L+  Y R    +D   V  EM + G   +V 
Sbjct: 513 REGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVL 572

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            YN L+         D A E+ ++M  S+   PD  T+ ++I
Sbjct: 573 TYNALVQGLCKNQEGDLAEELLKEM-VSKGMTPDDTTYFTLI 613



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE A  L+D  +    + D  +F+TLI  Y   G+      V  EM   G  P ++
Sbjct: 513 REGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVL 572

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           TYN L+  + + +     + + KEM   G++P+  TY +L+    + 
Sbjct: 573 TYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKV 619



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I ++ L+ +     R  +    +  M + G+ P   T  SLL  + +    E    +Y E
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAE 211

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M    ++ SV  +N ++ +    G   +A +    M++S   +P+  T+++++      G
Sbjct: 212 MFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETS-GVKPNIVTYNTIVHGYCSSG 270

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----- 331
           +V  A+A+   M     EP+ F   SLI    K  R ++  +    + + G+ P      
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 332 ---DRFC 335
              D FC
Sbjct: 331 TLIDGFC 337


>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           camara]
          Length = 381

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 137 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 196

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 197 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 256

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 257 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 311

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 312 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVITVVLN 358



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 63  SEMKTAGVXPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 181

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SMI I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 325 ELGITPD 331
             G+  D
Sbjct: 242 SSGVEID 248



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 23  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSYSTLLT 82

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 83  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 142

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 143 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 202

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 203 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 261

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 262 AGLVAHAKRLLHELKRPDNIPRD 284



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 261 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N    +L AYG+ +  +    VY EM
Sbjct: 317 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVITVVLNAYGKLQEFDKANDVYMEM 376

Query: 218 KEKG 221
           +E G
Sbjct: 377 QEVG 380


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
           R G +  A  L DR   +  +     + T++      G+    LN+  +M+ +  + PN+
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y+ ++D++ +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +E
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E+ +   V  YN L+      G   EA E++++M       P++ T+SSMI     + 
Sbjct: 316 MLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQN 374

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++  AE MF  M   G  PNL    +LI  Y  A+R DD +  L+ + E G+  D
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 114/245 (46%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++   LY +   ++ R D  +F+ LIK + +       L+ + ++  +G+ P+++T+N L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTL 155

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L  +    R  +   ++ +M +    PN  T+ +L+    R     + +++   M E G+
Sbjct: 156 LHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           Q +   Y T++      G T  A  +   M+   +  P+   +S++I      G+ S+A+
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            +F EM E G  P+LF   S+I  +  + R  D  + L  + E  I+PD      L+N  
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 343 TQTPK 347
            +  K
Sbjct: 336 VKEGK 340



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 47/261 (18%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +I P+   ++ LI  +   G F     +Y+EM   G+ PN ITY++++D   +  R    
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-- 233
           + ++  M   G SPN  T+ +L+  Y  A+  +D + +  EM E G+    T YNTL+  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 234 --------------------AMCADV-------------GYTDEAFEIFEDMKSSE---- 256
                                +C D+             G   +A E+F+ M+ S+    
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 257 ------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
                   +PD  T++ +I+     GK  EAE ++ EM   G  P+    +S+I    K 
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 311 QRTDDVVRALNRLPELGITPD 331
            R D+  +  + +     +P+
Sbjct: 560 SRLDEATQMFDSMGSKSFSPN 580



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 14/224 (6%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TLI  Y  A   D  + +  EM   G+  +  TYN L+              +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----------KGMQLSVT 227
            +EM  +GL P+  T  +LL         +D L +++ M++            G++  V 
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQ 512

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YN L++   + G   EA E++E+M       PD+ T+SSMI     + ++ EA  MF+ 
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPH-RGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M    F PN+   T+LI  Y KA R DD +     +   GI  +
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 1/169 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ LI      G F     +YEEM   G+ P+ ITY++++D + +  R  +   ++
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M     SPN  T+ +L+  Y +A   +D L ++ EM  +G+  +   Y TL+     V
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           G  + A +IF++M SS    PD+ T  +M+T    + ++  A AM  ++
Sbjct: 630 GNINGALDIFQEMISS-GVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 18/261 (6%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  A  L+ +      R +   F+TL+      G     + + + M   G++P  ITY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 162 LLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           ++D M +         + ++M + + + PN   Y++++ +  +     D  +++ EM+EK
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+   +  YN+++      G   +A ++ ++M   +   PD  T++++I      GK  E
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK-ISPDVVTYNALINAFVKEGKFFE 343

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------D 332
           AE +++EML  G  PN    +S+I  + K  R D        +   G +P+        D
Sbjct: 344 AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 333 RFCGC--------LLNVMTQT 345
            +CG         LL+ MT+T
Sbjct: 404 GYCGAKRIDDGMELLHEMTET 424



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 16/252 (6%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV- 175
           D   ++TLI  +   G+ +  L++ +EM + G+ P+++T + LLD +   G+ K   ++ 
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 176 KTIYKEMTD-------NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
           K + K   D       NG+ P+  TY  L+          +   +Y EM  +G+      
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y++++         DEA ++F+ M  S++  P+  TF+++I      G+V +   +F EM
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PK 347
              G   N     +LI  + K    +  +     +   G+ PD      + N++T    K
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSK 664

Query: 348 EELGKLVECVEK 359
           EEL + V  +EK
Sbjct: 665 EELKRAVAMLEK 676



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D   ++ +  +   F+TLI  Y  AG  D  L ++ EM   G+  N ITY  L+    
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           +         I++EM  +G+ P+  T  ++L
Sbjct: 628 KVGNINGALDIFQEMISSGVYPDTITIRNML 658


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
            ++  AF ++       +  D    +TLIK     G     L  ++++ A G + + ++Y
Sbjct: 142 AHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSY 201

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L++ + +A     V  + +++  + + P+   Y +++    + +   D   +Y EM  
Sbjct: 202 GTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIV 261

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG+  +V  YNTL+     +G   EAF +  +MK  +N  PD +TF+ +I      GK+ 
Sbjct: 262 KGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMK-LKNINPDVYTFNILIDALGKEGKID 320

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA ++F EM      PN+   TSLI    K    +  +    ++ E GI PD
Sbjct: 321 EAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPD 372



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 1/225 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G ++ A   +D+   + +++D  ++ TLI     AG       +  +++   VKP+++ 
Sbjct: 176 CGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVM 235

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  ++  + + KR      +Y EM   G+SPN  TY +L+  +      ++  S+  EMK
Sbjct: 236 YTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMK 295

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            K +   V  +N L+      G  DEA  +FE+MK  +N  P+  T++S+I        +
Sbjct: 296 LKNINPDVYTFNILIDALGKEGKIDEAISLFEEMK-HKNMFPNIVTYTSLIDGLCKNHHL 354

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
             A A+  +M E G +P+++  T L+    K  R ++  +    L
Sbjct: 355 ERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHL 399



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 94/194 (48%), Gaps = 1/194 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GN++ AF L +  + +    D   F+ LI   G  G  D  ++++EEMK   + PN++TY
Sbjct: 282 GNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTY 341

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +L+D + +     +   + K+M + G+ P+  +Y  LL A  +    E+    ++ +  
Sbjct: 342 TSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLV 401

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG  L+V  YN ++      G   +  ++   M+  + C PD+ TF ++I     + +  
Sbjct: 402 KGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKME-GKGCMPDAITFKTIICALFEKDEND 460

Query: 280 EAEAMFNEMLEAGF 293
           +AE    EM+  G 
Sbjct: 461 KAEKFLREMIARGL 474



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 77/178 (43%), Gaps = 1/178 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P    ++N+L ++ + K    V +++K+   NG++PN  T   L+  +    +     SV
Sbjct: 91  PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSV 150

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           +  + ++G        NTL+      G    A   F D   ++  Q D  ++ ++I    
Sbjct: 151 FANILKRGYHPDAITLNTLIKGLCFCGEIKRAL-YFHDKVVAQGFQLDQVSYGTLINGLC 209

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G+      +  ++     +P++ + T++I C  K +R  D     + +   GI+P+
Sbjct: 210 KAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPN 267


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 14/232 (6%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K R +P+   +++L+  +  AGN      V+ EMK  G++PN+ TY+ ++D + R+ +  
Sbjct: 208 KDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQIT 267

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++ EM D G  PN  T+ +L+R + +A   E  L VY +MK  G       YN L+
Sbjct: 268 RAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLI 327

Query: 234 -AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            + C D    +EA +I   +K  + C  ++ +F+ +    S  G V+ A  MF +M +  
Sbjct: 328 ESHCRD-DNLEEAVKILNSVK--KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLK 384

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 336
             PN      L++ +   + TD V++    + E  I P+          FCG
Sbjct: 385 CRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCG 436



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 12/215 (5%)

Query: 98  RAGNV---EMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           RAGN+   E  FG    A      I PN +  S +I     +G      +V+ EM  +G 
Sbjct: 227 RAGNISEAERVFGEMKMAG-----IQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGC 281

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            PN IT+NNL+    +A R  +V  +Y +M   G  P+  TY  L+ ++ R    E+ + 
Sbjct: 282 DPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVK 341

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +   +K KG  L+ + +N +    + +G  + A  +F  MK  + C+P++ T++ ++ + 
Sbjct: 342 ILNSVK-KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLK-CRPNTVTYNILMRMF 399

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           + +        +  EM E   EPN      LI  +
Sbjct: 400 ADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTF 434



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 36/210 (17%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DPNA  F+ L++++  AG  +  L VY +MK +G  P+ ITYN L+++  R     +   
Sbjct: 282 DPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVK 341

Query: 178 I----------------------------------YKEMTDNGLSPNWNTYASLLRAYGR 203
           I                                  + +M D    PN  TY  L+R +  
Sbjct: 342 ILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFAD 401

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
            +  +  L + +EM E  ++ +   Y  L++    +G+ + A+  F++M   +  +P   
Sbjct: 402 KKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLP 461

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            +  ++      G++ + E +  +M+  GF
Sbjct: 462 VYEMVLQQLRKAGQLKKHEELVEKMVNRGF 491



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  N+E A  + +  + +   ++ ++F+ +       G+ +    ++ +MK +  +PN +
Sbjct: 332 RDDNLEEAVKILNSVK-KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTV 390

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+      K    V  + KEM +N + PN NTY  L+  +    +  +  S ++EM
Sbjct: 391 TYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEM 450

Query: 218 -KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            +EK ++ S+ +Y  +L      G   +  E+ E M
Sbjct: 451 IEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKM 486



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 17/216 (7%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G SP    Y  ++   G+A    + +  +  M++ G +     ++ +++  +      EA
Sbjct: 143 GHSPE--PYMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEA 200

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
              F+ +K  +  +PD   ++S++      G +SEAE +F EM  AG +PN++  + +I 
Sbjct: 201 QSFFDSLK--DRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVID 258

Query: 306 CY---GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 362
                G+  R  DV    + + ++G  P+      L+ V  +  + E  K+++ V     
Sbjct: 259 ALCRSGQITRAHDV---FSEMIDVGCDPNAITFNNLMRVHVKAGRTE--KVLQ-VYNQMK 312

Query: 363 KLG----YVVKLLLEEQDIEGDFKKEATELFNSISK 394
           +LG     +    L E     D  +EA ++ NS+ K
Sbjct: 313 RLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKK 348


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 1/235 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  L+D   N++ R D   ++TLI      G+ D   +++++M +  + PN +TY
Sbjct: 415 GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 474

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L+D+     +         EM + G+ PN  TY S+++ Y R+          ++M  
Sbjct: 475 SILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMV 534

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             +   +  YNTL+          +AF++  +M   E  QPD  T++ +I   S  G V 
Sbjct: 535 NKVSPDLITYNTLIHGYIKEDKMHDAFKLL-NMMEKEKVQPDVVTYNMLINGFSVHGNVQ 593

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           EA  +F +M   G EP+ +   S+I  +  A  + +  +  + + + G  PDD+F
Sbjct: 594 EAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 648



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 10/341 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG   +A   Y    +    ++    + ++  Y  A  FD    V  EM+   V P+++
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 192

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N ++D   RA        +   M   GL P   TY S+L+   R+   +    V++EM
Sbjct: 193 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 252

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+   V  +  L+     VG  +EA +I+++M+     +PD  +FS +I + + RGK
Sbjct: 253 DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMR-HRGIKPDLVSFSCLIGLFARRGK 311

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A A   EM   G  P+  + T +I  + +A    D +R  + +   G  PD      
Sbjct: 312 MDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNT 371

Query: 338 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           LLN + +  +  +  G L E  E+           L+    IEG   K A +LF+++   
Sbjct: 372 LLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDK-ALQLFDTMLNQ 430

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436
             +       D+     L++  C+  +L    +++ D+ SR
Sbjct: 431 RLRP------DIVTYNTLIDGMCRQGDLDKANDLWDDMHSR 465



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +E A  +Y   R+   + D  +FS LI L+   G  D  +    EM+  G+ P+ +
Sbjct: 273 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV 332

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++    RA        +  EM   G  P+  TY +LL    + R   D   +  EM
Sbjct: 333 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 392

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G+   +  + TL+      G  D+A ++F+ M  ++  +PD  T++++I     +G 
Sbjct: 393 RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM-LNQRLRPDIVTYNTLIDGMCRQGD 451

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +A  ++++M      PN    + LI  + +  + +D    L+ +   GI P+
Sbjct: 452 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 505



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+++ A  L+D   + +   +   +S LI  +   G  +      +EM   G+ PN++
Sbjct: 448 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 507

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+++    R+    + +   ++M  N +SP+  TY +L+  Y +     D   +   M
Sbjct: 508 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMM 567

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +++ +Q  V  YN L+   +  G   EA  IFE M  ++  +PD +T+ SMI      G 
Sbjct: 568 EKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM-CAKGIEPDRYTYMSMINGHVTAGN 626

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             EA  + +EML+ GF P+
Sbjct: 627 SKEAFQLHDEMLQRGFAPD 645


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
           R G +  A  L DR   +  +     + T++      G+    LN+  +M+ +  + PN+
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y+ ++D++ +  R    + ++ EM + G+ P+  TY S++  +  +    D   + +E
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E+ +   V  YN L+      G   EA E++++M       P++ T+SSMI     + 
Sbjct: 316 MLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML-PRGIIPNTITYSSMIDGFCKQN 374

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++  AE MF  M   G  PNL    +LI  Y  A+R DD +  L+ + E G+  D
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVAD 429



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 112/245 (45%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++   LY +   ++ R D  +F+ LIK + +       L+ + ++  +G+ P+++T+  L
Sbjct: 96  DLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL 155

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L  +    R  +    + +M +    PN  T+ +L+    R     + +++   M E G+
Sbjct: 156 LHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL 215

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           Q +   Y T++      G T  A  +   M+   +  P+   +S++I      G+ S+A+
Sbjct: 216 QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            +F EM E G  P+LF   S+I  +  + R  D  + L  + E  I+PD      L+N  
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF 335

Query: 343 TQTPK 347
            +  K
Sbjct: 336 VKEGK 340



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 47/261 (18%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +I P+   ++ LI  +   G F     +Y+EM   G+ PN ITY++++D   +  R    
Sbjct: 320 KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAA 379

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-- 233
           + ++  M   G SPN  T+ +L+  Y  A+  +D + +  EM E G+    T YNTL+  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 234 --------------------AMCADV-------------GYTDEAFEIFEDMKSSE---- 256
                                +C D+             G   +A E+F+ M+ S+    
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 257 ------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
                   +PD  T++ +I+     GK  EAE ++ EM   G  P+    +S+I    K 
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 311 QRTDDVVRALNRLPELGITPD 331
            R D+  +  + +     +P+
Sbjct: 560 SRLDEATQMFDSMGSKSFSPN 580



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 14/224 (6%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TLI  Y  A   D  + +  EM   G+  +  TYN L+              +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----------KGMQLSVT 227
            +EM  +GL P+  T  +LL         +D L +++ M++            G++  V 
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQ 512

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YN L++   + G   EA E++E+M       PD+ T+SSMI     + ++ EA  MF+ 
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPH-RGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M    F PN+   T+LI  Y KA R DD +     +   GI  +
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 615



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 1/169 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ LI      G F     +YEEM   G+ P+ ITY++++D + +  R  +   ++
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M     SPN  T+ +L+  Y +A   +D L ++ EM  +G+  +   Y TL+     V
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           G  + A +IF++M SS    PD+ T  +M+T    + ++  A AM  ++
Sbjct: 630 GNINGALDIFQEMISS-GVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 16/252 (6%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQV- 175
           D   ++TLI  +   G+ +  L++ +EM + G+ P+++T + LLD +   G+ K   ++ 
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488

Query: 176 KTIYKEMTD-------NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
           K + K   D       NG+ P+  TY  L+          +   +Y EM  +G+      
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y++++         DEA ++F+ M  S++  P+  TF+++I      G+V +   +F EM
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PK 347
              G   N     +LI  + K    +  +     +   G+ PD      + N++T    K
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI---TIRNMLTGLWSK 664

Query: 348 EELGKLVECVEK 359
           EEL + V  +EK
Sbjct: 665 EELKRAVAMLEK 676



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D   ++ +  +   F+TLI  Y  AG  D  L ++ EM   G+  N ITY  L+    
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           +         I++EM  +G+ P+  T  ++L
Sbjct: 628 KVGNINGALDIFQEMISSGVYPDTITIRNML 658


>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
 gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 109/214 (50%), Gaps = 1/214 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA   + A GL+D  RN     D   +STLI  +G AG FD  L   ++M+   V  +++
Sbjct: 119 RAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLFWLQQMEQDRVSGDLV 178

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+NL++   +     +  +I+  +  +G+ P+   Y S++  +G+A+   +   + +EM
Sbjct: 179 LYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEM 238

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G+      Y+TLL++  +     EA  +F +M  ++ C  D  T + MI +      
Sbjct: 239 REVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAK-CPLDLTTCNVMIDVYGQLDM 297

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
             EA+ +F  M + G EPN+    +L++ YG+ +
Sbjct: 298 AKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETE 331



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/266 (19%), Positives = 116/266 (43%), Gaps = 30/266 (11%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++      K  +D    + +I +YG          ++  M+ +G++PN+++YN LL 
Sbjct: 266 ALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLR 325

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G  +   +   +++ M    +  N  TY ++++ YG++   E   ++ +EM+ +G++ 
Sbjct: 326 VYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEP 385

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----------------------------- 255
           +   Y+T++++    G  D A  +F+ ++SS                             
Sbjct: 386 NAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLL 445

Query: 256 -ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
            E   PDS    + I I +  G++ EA  +F +  +AG   ++ V   ++  + + ++  
Sbjct: 446 HELKHPDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRKPA 505

Query: 315 DVVRALNRLPELGITPDDRFCGCLLN 340
           +V+    ++   G  PD      +LN
Sbjct: 506 NVIEVFEKMRGAGYFPDSNVIALVLN 531



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 104/204 (50%), Gaps = 1/204 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++STL+ +Y     F   L+V+ EM       ++ T N ++D  G+     +   ++
Sbjct: 246 DTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLF 305

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   G+ PN  +Y +LLR YG      + + ++R M++K ++ +V  YNT++ +    
Sbjct: 306 WSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKS 365

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              ++A  + ++M+ +   +P++ T+S++I+I    GK+  A  +F ++  +G E +  +
Sbjct: 366 LEHEKATNLMQEMQ-NRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVL 424

Query: 300 LTSLIQCYGKAQRTDDVVRALNRL 323
             ++I  Y ++       R L+ L
Sbjct: 425 YQTMIVAYERSGLVAHAKRLLHEL 448



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 110/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +      D  A++++I ++G A  F     + +EM+ +GV P+ ++Y+ LL 
Sbjct: 196 AISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLS 255

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                ++  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++ 
Sbjct: 256 VYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEP 315

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  YNTLL +  +     EA  +F  M+  ++ + +  T+++MI +     +  +A  +
Sbjct: 316 NVVSYNTLLRVYGETELFGEAIHLFRLMQ-KKDIEQNVVTYNTMIKVYGKSLEHEKATNL 374

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EM   G EPN    +++I  +GKA + D       +L   G+  D
Sbjct: 375 MQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEID 421



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 92/191 (48%), Gaps = 1/191 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++  YN +L  + RAK+      ++ EM +  L+P+  TY++L+  +G+A   + +L  
Sbjct: 105 PSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLFW 164

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            ++M++  +   + LY+ L+ +   +    +A  IF  +K S    PD   ++SMI +  
Sbjct: 165 LQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRS-GIMPDLVAYNSMINVFG 223

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
                 EA+ +  EM E G  P+    ++L+  Y + ++  + +     + E     D  
Sbjct: 224 KAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLT 283

Query: 334 FCGCLLNVMTQ 344
            C  +++V  Q
Sbjct: 284 TCNVMIDVYGQ 294



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 106/237 (44%), Gaps = 17/237 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A  L+ + R+    ID   + T+I  Y  +G       +  E+K     P+ I
Sbjct: 399 KAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHELK----HPDSI 454

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
                +  + RA R  +   ++++  D G   + + +  ++  + R R   + + V+ +M
Sbjct: 455 PRETAIKILARAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRKPANVIEVFEKM 514

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G      +   +L     +   ++A  ++++M+  E   PD   F  M+++   R  
Sbjct: 515 RGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEMQEEECVFPDEVHF-QMLSLYGARKD 573

Query: 278 VSEAEAMFNEMLEAGFEPNL------FVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
               EA+F E L++  +PN+       V+ S+   Y +  R +D  R +NR+ + G+
Sbjct: 574 FMMIEALF-ERLDS--DPNINKKELHLVVASI---YERKNRLNDASRIMNRMSKGGV 624


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV+MA  L+D      ++ D   ++  I  Y   G     + V++EM   GV PN++TY
Sbjct: 304 GNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTY 363

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N+L+D + +A        I K M  +GL+P+  T   LL    +++  +  + ++ ++ E
Sbjct: 364 NSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVE 423

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G+   V  Y  L+  C       EA  +  DM   +N  P   T+S +I      G++S
Sbjct: 424 SGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMH-LKNLVPHIVTYSCLIDGLCRSGRIS 482

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            A  + NEM   G  P+    + L+    K Q  D+ V   N++ + G+ PD
Sbjct: 483 NAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPD 534



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 44/291 (15%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK--------AIG 151
           G V  A   +D   N  + ++  ++  LI      G  +  +N+   ++           
Sbjct: 121 GGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFF 180

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDT 210
           VK N++ Y+ ++D + R     +    Y EM  NG+ PN  TY SL+R   G  ++ E  
Sbjct: 181 VKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEG- 239

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------NC------ 258
             +  EM  +G+ +SV ++  L+      G   EA E+F++M +         C      
Sbjct: 240 FGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGG 299

Query: 259 ----------------------QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                                 + D WT++  I      G+V +A  +F+EM   G  PN
Sbjct: 300 YCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPN 359

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           +    SLI C  KA         +  +   G+TPD   C  LL+ + ++ +
Sbjct: 360 IVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKR 410



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D   N  +  +    + L+  Y   GN D    +++ +   G K ++ TYN  +    
Sbjct: 277 MFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYC 336

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +  R      ++ EM   G+ PN  TY SL+    +A        + + M   G+   + 
Sbjct: 337 KVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIV 396

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
               LL         D+A  +F  +  S    PD W+++ +I  C    ++ EA  +  +
Sbjct: 397 TCCILLDGLCKSKRLDQAILLFNQLVES-GLTPDVWSYTILIHGCCTSRRMGEAMNLLRD 455

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M      P++   + LI    ++ R  +  R LN +   G  PD
Sbjct: 456 MHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPD 499



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 102/243 (41%), Gaps = 1/243 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
            FGL D        +    F+ LI      G       +++EM   G +PN++T   L+ 
Sbjct: 239 GFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMG 298

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                      + ++  + + G   +  TY   +  Y +     D + V+ EM  +G+  
Sbjct: 299 GYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVP 358

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           ++  YN+L+      G    A+EI + M  S    PD  T   ++       ++ +A  +
Sbjct: 359 NIVTYNSLIDCLCKAGEVSGAWEIVKTMHRS-GLTPDIVTCCILLDGLCKSKRLDQAILL 417

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           FN+++E+G  P+++  T LI     ++R  + +  L  +    + P      CL++ + +
Sbjct: 418 FNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCR 477

Query: 345 TPK 347
           + +
Sbjct: 478 SGR 480



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 119 IDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + P+ +S  I ++G  T+      +N+  +M    + P+++TY+ L+D + R+ R     
Sbjct: 426 LTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAW 485

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM   G  P+  TY+ LL A  + ++ ++ + ++ +M ++G++  V  Y  ++   
Sbjct: 486 RLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGY 545

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
                 DEA  +F +M   +N  PD  T++ +
Sbjct: 546 CKSERIDEAINLFREMH-MKNLVPDIVTYTIL 576


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 3/216 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P+A  ++ LI  Y    N      +++EM A G+KP   TY +LL  + +  R  +  
Sbjct: 392 ISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++K++T  G+ P+   + +L+  +      +    + ++M    +      +NT++   
Sbjct: 452 DLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGH 511

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  +EA E+F++MK     +PD  +F+++I+  S RG + +A  + NEML+ GF P 
Sbjct: 512 CREGKVEEARELFDEMKR-RGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPT 570

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +    +L+Q   K Q  D     L  +   G+TPDD
Sbjct: 571 VLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDD 606



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 36/268 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  +++    +  R     ++TLI  +   GN D      +EM   G+ P M 
Sbjct: 303 KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMS 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+  +   +R  + + + KE+ + G+SP+  TY  L+  Y R    +    ++ EM
Sbjct: 363 TYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICS--- 273
              G++ +   Y +LL + +      EA ++F+ + +SE   PD+  F+++I   CS   
Sbjct: 423 LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKI-TSEGVLPDAIMFNALIDGHCSNSN 481

Query: 274 ------------------------------CR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                                         CR GKV EA  +F+EM   G +P+     +
Sbjct: 482 VKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
           LI  Y +     D  R  N + + G  P
Sbjct: 542 LISGYSRRGDIKDAFRVRNEMLDTGFNP 569



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 1/242 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A+ LY      + +     F+ +I +    G      +    M+  GVKPN++TYN +
Sbjct: 203 EAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +     + R      I   M    + P+  TY SL+    +    E+   ++ EM +KG+
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           + S  +YNTL+    + G  D A   ++D    +   P   T++S+I       +  EAE
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMA-SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            M  E+ E G  P+      LI  Y +           + +   GI P  +    LL+V+
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441

Query: 343 TQ 344
           ++
Sbjct: 442 SK 443



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 104/216 (48%), Gaps = 1/216 (0%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           ++L+ L+      +    +Y EM  + +K ++ T+N +++ + +  +  + K     M  
Sbjct: 190 NSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMET 249

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
           +G+ PN  TY +++  Y  +   E   ++   MK + ++     Y +L++     G  +E
Sbjct: 250 SGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A +IFE+M   +  +P +  ++++I     +G +  A A  +EML+ G  P +    SLI
Sbjct: 310 ASKIFEEM-VQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLI 368

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
                 QRTD+    +  + E GI+PD      L+N
Sbjct: 369 HALFMEQRTDEAECMIKEIQEKGISPDAITYNILIN 404



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 68/144 (47%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           NV+ AF L       K   D   F+T+++ +   G  +    +++EMK  G+KP+ I++N
Sbjct: 481 NVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFN 540

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+    R         +  EM D G +P   TY +L++   + + G+    + +EM  K
Sbjct: 541 TLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSK 600

Query: 221 GMQLSVTLYNTLLAMCADVGYTDE 244
           GM    T Y TL+   A V   DE
Sbjct: 601 GMTPDDTTYFTLIEGIAKVNIPDE 624



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 1/162 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+ +  +E    D   F+ LI  + +  N  G   + ++M  + V P+ +T+N ++    
Sbjct: 453 LFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHC 512

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R  +  + + ++ EM   G+ P+  ++ +L+  Y R    +D   V  EM + G   +V 
Sbjct: 513 REGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVL 572

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            YN L+         D A E+ ++M  S+   PD  T+ ++I
Sbjct: 573 TYNALVQGLCKNQEGDLAEELLKEM-VSKGMTPDDTTYFTLI 613



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G VE A  L+D  +    + D  +F+TLI  Y   G+      V  EM   G  P ++
Sbjct: 513 REGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVL 572

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           TYN L+  + + +     + + KEM   G++P+  TY +L+    + 
Sbjct: 573 TYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKV 619



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 9/187 (4%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I ++ L+ +     R  +    +  M + G+ P   T  SLL  + +    E    +Y E
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAE 211

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M    ++ SV  +N ++ +    G   +A +    M++S   +P+  T+++++      G
Sbjct: 212 MFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETS-GVKPNIVTYNTIVHGYCSSG 270

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----- 331
           +V  A+A+   M     EP+ F   SLI    K  R ++  +    + + G+ P      
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 332 ---DRFC 335
              D FC
Sbjct: 331 TLIDGFC 337


>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           montevidensis]
          Length = 418

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 167 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 226

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G ++   L+ T++
Sbjct: 227 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMI 286

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 287 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 341

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 342 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 388



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMKA GV PN  +Y+ LL 
Sbjct: 53  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLT 112

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 113 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 172

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 173 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 232

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 233 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYER 291

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 292 AGLVAHAKRLLHELKRPDNIPRD 314



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 99/188 (52%), Gaps = 1/188 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+  + 
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + T Y+TLL M  +     
Sbjct: 62  RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKFL 121

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+    +L
Sbjct: 122 EALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 304 IQCYGKAQ 311
           ++ YG A+
Sbjct: 181 LRVYGDAE 188



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 113/232 (48%), Gaps = 8/232 (3%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 13  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 72

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 73  NAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMRE 132

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
               L +T  N ++ +   +G   EA ++F  M+     +P+  ++++++ +        
Sbjct: 133 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM-GIEPNVVSYNTLLRVYGDAELFG 191

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA  +F  M     E N+    S++  YGK    +     +  +   GI P+
Sbjct: 192 EAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPN 243



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    +A  IF  +
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           K S    PD   +++MI +        EA ++  EM  AG  PN    ++L+  Y + ++
Sbjct: 61  KRS-GFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKK 119

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             + +   + + E+    D   C  +++V  Q
Sbjct: 120 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 151



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 291 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 346

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 347 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 406

Query: 218 KEKG 221
           +E G
Sbjct: 407 QEVG 410


>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like, partial [Cucumis sativus]
          Length = 312

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 1/228 (0%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           MA  ++D  R ++ + +   F+ L+      G  +    ++E+M+  G +P++  YN L+
Sbjct: 14  MAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALM 73

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
           ++  RA  P+    I+  M   G  P+  +Y  ++ AYGRA   ED  +V+ EMK  G+ 
Sbjct: 74  ESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGIT 133

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
            ++  +  LL+  +  G   +  +I   M  S   +PD++  +SM+ +    G+  + E 
Sbjct: 134 PTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKS-GLKPDTFVMNSMLNLYGRLGQFGKMED 192

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +F+ M +     ++     LI  YG+A   + +      LP   + PD
Sbjct: 193 LFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPD 240



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 121/264 (45%), Gaps = 2/264 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G  E A  ++++ +   +  D  A++ L++ Y  AG   G   ++  M+ +G +P+ 
Sbjct: 42  AREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDR 101

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN ++D  GRA      + +++EM   G++P   ++  LL AY  A        +  +
Sbjct: 102 ASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQ 161

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G++    + N++L +   +G   +  ++F  M+    C+ D  T++ +I +    G
Sbjct: 162 MHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGP-CRADISTYNILINVYGRAG 220

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V   E +F  +     EP++   TS I  Y + +     +    ++ + G  PD     
Sbjct: 221 FVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAK 280

Query: 337 CLLNVMTQTPK-EELGKLVECVEK 359
            LL+  +   + E++  +V  + K
Sbjct: 281 VLLSACSSEEQIEQVTNVVRTMHK 304


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 10/341 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG   +A   Y    +    ++    + ++  Y  A  FD    V  EM+   V P+++
Sbjct: 72  RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 131

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N ++D   RA        +   M   GL P   TY S+L+   R+   +    V++EM
Sbjct: 132 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 191

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+   V  +  L+     VG  +EA +I+++M+     +PD  +FS +I + + RGK
Sbjct: 192 DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMR-HRGIKPDLVSFSCLIGLFARRGK 250

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A A   EM   G  P+  + T +I  + +A    D +R  + +   G  PD      
Sbjct: 251 MDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNT 310

Query: 338 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
           LLN + +  +  +  G L E  E+           L+    IEG   K A +LF+++   
Sbjct: 311 LLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDK-ALQLFDTMLNQ 369

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436
             +       D+     L++  C+  +L    +++ D+ SR
Sbjct: 370 RLRP------DIVTYNTLIDGMCRQGDLDKANDLWDDMHSR 404



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +E A  +Y   R+   + D  +FS LI L+   G  D  +    EM+  G+ P+ +
Sbjct: 212 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV 271

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++    RA        +  EM   G  P+  TY +LL    + R   D   +  EM
Sbjct: 272 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM 331

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+G+   +  + TL+      G  D+A ++F+ M  ++  +PD  T++++I     +G 
Sbjct: 332 RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM-LNQRLRPDIVTYNTLIDGMCRQGD 390

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +A  ++++M      PN    + LI  + +  + +D    L+ +   GI P+
Sbjct: 391 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 444



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 116/254 (45%), Gaps = 2/254 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  L+D   N++ R D   ++TLI      G+ D   +++++M +  + PN +TY
Sbjct: 354 GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 413

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L+D+     +         EM + G+ PN  TY S+++ Y R+          ++M  
Sbjct: 414 SILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMV 473

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             +   +  YNTL+          +AF++  +M   E  QPD  T++ +I   S  G V 
Sbjct: 474 NKVSPDLITYNTLIHGYIKEDKMHDAFKLL-NMMEKEKVQPDVVTYNMLINGFSVHGNVQ 532

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA  +F +M   G EP+ +   S+I  +  A  + +  +  + + + G     R  G + 
Sbjct: 533 EAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG-KEKRRAAGTVQ 591

Query: 340 NVMTQTPKEELGKL 353
            V  Q   E L ++
Sbjct: 592 FVNIQNSAESLKQM 605



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 1/197 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+++ A  L+D   + +   +   +S LI  +   G  +      +EM   G+ PN++
Sbjct: 387 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 446

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+++    R+    + +   ++M  N +SP+  TY +L+  Y +     D   +   M
Sbjct: 447 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMM 506

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +++ +Q  V  YN L+   +  G   EA  IFE M  ++  +PD +T+ SMI      G 
Sbjct: 507 EKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM-CAKGIEPDRYTYMSMINGHVTAGN 565

Query: 278 VSEAEAMFNEMLEAGFE 294
             EA  + +EML+ G E
Sbjct: 566 SKEAFQLHDEMLQRGKE 582


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 120/226 (53%), Gaps = 1/226 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T++  +   G+ D   + Y EM   G+ P+++TY++++  + +A+   +   + 
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVL 259

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ P+  TY S+L  Y  +   ++ +   ++M+  G++ +V  Y++L+      
Sbjct: 260 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKN 319

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G + EA +IF+ M +    +PD  T+ +++   + +G + E  A+ + M+  G +P+  V
Sbjct: 320 GRSTEARKIFDSM-TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 378

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
              LI  Y K ++ D  +   +++ + G+ P+    G +++V+ ++
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 154/343 (44%), Gaps = 11/343 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A+  Y    +     D   +S++I     A   D  + V   M   GV P+ +
Sbjct: 213 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 272

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN++L     + +P +     K+M  +G+ PN  TY+SL+    +     +   ++  M
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++  +  Y TLL   A  G   E   +  D+      QPD   F+ +I   + + K
Sbjct: 333 TKRGLEPDIATYRTLLQGYATKGALVEMHALL-DLMVRNGIQPDHHVFNILICAYAKQEK 391

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A  +F++M + G  PN+    ++I    K+   DD +    ++ + G+TP+      
Sbjct: 392 VDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTS 451

Query: 338 LLNVMTQTPK----EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
           L++ +    K    EEL  ++E +++           +++    EG    E+ +LF+ + 
Sbjct: 452 LIHGLCTCDKWDKAEEL--ILEMLDRGICLNTIFFNSIIDSHCKEGRV-IESEKLFDLMV 508

Query: 394 K-DVKKAYC--NCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433
           +  VK      N LID C     ++ A KLL   +++ V  DI
Sbjct: 509 RIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDI 551



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 5/238 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           RAG +++ F        + +R+D   F+ L+K L       D    V   M  +G  P++
Sbjct: 104 RAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDV 163

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRARYGEDTLSV 213
            +YNNLL  +    R  +   +   M D+   G  P+  +Y ++L  + +    +   S 
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y EM ++G+   V  Y++++A        D+A E+   M  +    PD  T++S++    
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYC 282

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G+  EA     +M   G EPN+   +SL+    K  R+ +  +  + + + G+ PD
Sbjct: 283 SSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 9/251 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  +  L+D       + D   ++TLI     AG  D    +   M ++GVKP+++
Sbjct: 493 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 552

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L++   R  R      ++KEM  +G+SPN  TY  +L+     R       +Y  +
Sbjct: 553 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 612

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G QL ++ YN +L        TDEA  +F+++  ++  Q ++ TF+ MI      G+
Sbjct: 613 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD-LQLETRTFNIMIGALLKCGR 671

Query: 278 VSEAEAMFNEMLEAGFEPNL----FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           + EA+ +F      G  P++     +  +LI+  G  +  DD+  ++    E G + D R
Sbjct: 672 MDEAKDLFAAHSANGLVPDVRTYSLMAENLIE-QGSLEELDDLFLSME---ENGCSADSR 727

Query: 334 FCGCLLNVMTQ 344
               ++  + Q
Sbjct: 728 MLNSIVRKLLQ 738



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 124/275 (45%), Gaps = 19/275 (6%)

Query: 66  PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFS 125
           P+  T SS  +Y+  N +S  A K+                  +D         D   + 
Sbjct: 304 PNVVTYSSLMNYLCKNGRSTEARKI------------------FDSMTKRGLEPDIATYR 345

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
           TL++ Y T G       + + M   G++P+   +N L+    + ++  Q   ++ +M  +
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH 405

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           GL+PN   Y +++    ++   +D +  + +M ++G+  ++ +Y +L+         D+A
Sbjct: 406 GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKA 465

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            E+  +M     C  ++  F+S+I      G+V E+E +F+ M+  G +P++    +LI 
Sbjct: 466 EELILEMLDRGICL-NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLID 524

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
               A + D+  + L  +  +G+ PD    G L+N
Sbjct: 525 GCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLIN 559



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 11/272 (4%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+++I  +   G       +++ M  IGVKP++ITYN L+D    A +  +   +   M 
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ P+  TY +L+  Y R    +D L++++EM   G+  ++  YN +L        T 
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTA 603

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E++  +  S   Q +  T++ ++          EA  MF  +     +        +
Sbjct: 604 AAKELYVSITKS-GTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 662

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECVEKSNS 362
           I    K  R D+           G+ PD R    +  N++ Q   EEL  L   +E++  
Sbjct: 663 IGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGC 722

Query: 363 K-----LGYVVKLLLEEQDIEGDFKKEATELF 389
                 L  +V+ LL+     GD  +  T LF
Sbjct: 723 SADSRMLNSIVRKLLQ----RGDITRAGTYLF 750



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 99/256 (38%), Gaps = 46/256 (17%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG---LSPNWNTYASLL 198
           +V++E+   G   ++   N  L  + R   P    + Y  M   G   ++P  +TYA L+
Sbjct: 41  HVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTYAILI 99

Query: 199 ----RAYGRARYGEDTLS---------------------------------VYREMKEKG 221
               RA GR   G   L                                  V R M E G
Sbjct: 100 GCCCRA-GRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELG 158

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQPDSWTFSSMITICSCRGKVS 279
               V  YN LL    D   + EA E+   M         PD  ++++++      G   
Sbjct: 159 CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSD 218

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           +A + ++EML+ G  P++   +S+I    KAQ  D  +  LN + + G+ PD      +L
Sbjct: 219 KAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 278

Query: 340 N--VMTQTPKEELGKL 353
           +    +  PKE +G L
Sbjct: 279 HGYCSSGQPKEAIGTL 294


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 118/238 (49%), Gaps = 3/238 (1%)

Query: 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           +K  ++   F+ + + Y  A      ++ + +M+  G+K      N LLDT+ ++++  +
Sbjct: 67  QKGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSRQVER 126

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL- 233
            + ++ +M   G   +  +Y  LL  +G+ +     + VY EMK++G +  V  Y  L+ 
Sbjct: 127 AQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILIN 186

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
           A C    Y D+A E+F +M+ ++NC+P    + ++I       ++SEA   F     +GF
Sbjct: 187 AHCKSRRY-DDAIELFHEME-AKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKASGF 244

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
            P      +++  Y  ++R DDV R ++ + + G+ P  R    +L+ + +  K ++ 
Sbjct: 245 VPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTKIA 302



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 105/230 (45%), Gaps = 1/230 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N+     +Y+  ++E +  D   +  LI  +  +  +D  + ++ EM+A   KP+   Y 
Sbjct: 158 NLSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYC 217

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L++ +G  KR  +    ++    +G  P   TY +++ AY  +   +D      EM++ 
Sbjct: 218 TLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKG 277

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+  S   Y+ +L      G T  A+ +F+ M S E CQP   T+  ++ +     +V  
Sbjct: 278 GVGPSARTYDIILHHLIRAGKTKIAYSVFQKM-SCEGCQPSVSTYEIIVRMFCNEDRVDM 336

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           A  ++++M   G  P + + ++LI       + D+       + ++GI P
Sbjct: 337 AIKVWDQMKAKGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDVGIRP 386



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 1/226 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+     +  +  P+ + TLI   G        L  +E  KA G  P   TYN ++ 
Sbjct: 197 AIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVG 256

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
               ++R   V+    EM   G+ P+  TY  +L    RA   +   SV+++M  +G Q 
Sbjct: 257 AYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCEGCQP 316

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           SV+ Y  ++ M  +    D A ++++ MK ++   P    FS++I       K+ EA   
Sbjct: 317 SVSTYEIIVRMFCNEDRVDMAIKVWDQMK-AKGILPVMHMFSTLINSLCHESKLDEACMY 375

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           F EML+ G  P   + ++L Q      + D VV    +L +L   P
Sbjct: 376 FQEMLDVGIRPPAQLFSNLKQNLLDEGKKDTVVVFERKLDKLRKAP 421



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/100 (20%), Positives = 53/100 (53%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG  ++A+ ++ +   E  +   + +  +++++      D  + V+++MKA G+ P M 
Sbjct: 295 RAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMH 354

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
            ++ L++++    +  +    ++EM D G+ P    +++L
Sbjct: 355 MFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNL 394



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 2/162 (1%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G   +  +Y +L+ + G+ +      ++  +MK+KG+ L+   +  +    A      EA
Sbjct: 34  GFQYSTESYHALIESLGKIKQFNVIWNLVTDMKQKGL-LNKETFALISRRYARARKVKEA 92

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            + F  M+        S     + T+C  R +V  A+ +F++M + GF  ++   T L++
Sbjct: 93  VDAFMKMEKFGLKIESSDVNRLLDTLCKSR-QVERAQLVFDKMNKRGFVADIKSYTILLE 151

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
            +G+ +    ++   N + + G  PD    G L+N   ++ +
Sbjct: 152 GWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRR 193


>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           turbinata]
          Length = 441

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 184 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 243

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 244 KANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 303

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 304 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 358

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +V+   +++  LG  PD      +LN
Sbjct: 359 VKDITVFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSDVIAIVLN 405



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 2   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 61

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G  P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 62  RKLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 121

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 122 TSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EPN+    +L++ YG A+
Sbjct: 181 GMRKMGIEPNVVSYNTLLRVYGDAE 205



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  G+     +   +
Sbjct: 119 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 178

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +   
Sbjct: 179 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 238

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  
Sbjct: 239 TLEHEKANNLIQEMQ-SRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQI 297

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  ++I  Y +A       R L+ L      P D
Sbjct: 298 LFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 331



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 308 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 363

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 364 VFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 423

Query: 218 KEKGMQLSVTLYNTLLAM 235
           +E G   S  ++  +L++
Sbjct: 424 QEVGCVFSDQVHFQMLSL 441


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 124/251 (49%), Gaps = 8/251 (3%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +++T+I  +   G      N++ EM   GV P+++TY++ +D + +A+   + + +
Sbjct: 225 PNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELV 284

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            ++M  NG  P+  TY  ++  Y      ++T  ++REM  +G+   +   N+ ++    
Sbjct: 285 LRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCK 344

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G + EA E F+ M +++  +PD  T+S ++   +  G V +   +FN M   G   +  
Sbjct: 345 HGKSKEAAEFFDSM-AAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHS 403

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           V   LI  YGK    D+ +    ++ E G+ PD    G ++   ++     +G+L + ++
Sbjct: 404 VYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSR-----MGRLADAMD 458

Query: 359 KSNSKLGYVVK 369
           K N  +   +K
Sbjct: 459 KFNQMIAMGLK 469



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 1/188 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +I  Y   G +     ++ EM   G+ P++ T N+ + ++ +  +  +    +
Sbjct: 296 DKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFF 355

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   G  P+  TY+ LL  Y    Y  D L+++  M+  G+    ++YN L+      
Sbjct: 356 DSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKR 415

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  DEA  IF  M+      PD+WT+ ++I   S  G++++A   FN+M+  G +P+  V
Sbjct: 416 GMMDEAMLIFTQMQ-ERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIV 474

Query: 300 LTSLIQCY 307
             SLIQ +
Sbjct: 475 YNSLIQGF 482



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 110/234 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A   +D    +  + D   +S L+  Y   G     LN++  M+  G+  +  
Sbjct: 344 KHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHS 403

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+D  G+     +   I+ +M + G+ P+  TY +++ A+ R     D +  + +M
Sbjct: 404 VYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQM 463

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++    +YN+L+      G   +A E+  +M S    +P++  F+S+I      G+
Sbjct: 464 IAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGR 523

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EA+ +F+ ++  G  P++    SLI  YG   + +     L+ +  +GI PD
Sbjct: 524 VVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPD 577



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 105/207 (50%), Gaps = 1/207 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +E AFG+ D   +     D   +S L+  Y   G  D  L ++ EM + GVKP  IT
Sbjct: 556 VGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTIT 615

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  +L  +    R    K +  EM ++G + + +T   +L    R    ++ +++++++ 
Sbjct: 616 YGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLG 675

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              ++ ++ + NT++     V   +EA E+F+ + S+    P++ T+  MIT     G V
Sbjct: 676 AMNVKFNIAIINTMIDAMYKVRKREEANELFDSI-SATGLVPNASTYGVMITNLLKEGSV 734

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            EA+ MF+ M ++G  P+  +L ++I+
Sbjct: 735 EEADNMFSLMEKSGCAPSSRLLNNIIR 761



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 132/301 (43%), Gaps = 9/301 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  ++ + +      D   + T+I  +   G     ++ + +M A+G+KP+ I
Sbjct: 414 KRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTI 473

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAY---GRARYGEDTLSV 213
            YN+L+          + K +  EM   G+  PN   + S++ +    GR    +D   +
Sbjct: 474 VYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDL 533

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
              + E+     V  +N+L+     VG  ++AF + + M S    +PD  T+S+++    
Sbjct: 534 VIHIGERP---DVITFNSLIDGYGLVGKMEKAFGVLDAMISV-GIEPDVVTYSALLDGYC 589

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G++ +   +F EML  G +P       ++       RT    +  + + E G T D  
Sbjct: 590 RNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDIS 649

Query: 334 FCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
            CG +L  + +    +E   L + +   N K    +   + +   +   ++EA ELF+SI
Sbjct: 650 TCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSI 709

Query: 393 S 393
           S
Sbjct: 710 S 710



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 125/266 (46%), Gaps = 11/266 (4%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+++I      G      ++++ +  IG +P++IT+N+L+D  G   +  +   +
Sbjct: 506 PNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGV 565

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
              M   G+ P+  TY++LL  Y R    +D L ++REM  KG++ +   Y  +L    +
Sbjct: 566 LDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFN 625

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNL 297
            G T  A ++  +M  S      S     +I    CR     EA A+F ++     + N+
Sbjct: 626 DGRTVGAKKMCHEMIESGTTMDIST--CGIILGGLCRNNCDDEAIALFKKLGAMNVKFNI 683

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVEC 356
            ++ ++I    K ++ ++     + +   G+ P+    G ++ N++ +   EE   +   
Sbjct: 684 AIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSL 743

Query: 357 VEKSNSK-----LGYVVKLLLEEQDI 377
           +EKS        L  ++++LLE+ +I
Sbjct: 744 MEKSGCAPSSRLLNNIIRVLLEKGEI 769



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 4/199 (2%)

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           EE +     P + TYN L+D   RA RP     ++      GL  +      LL+    A
Sbjct: 108 EEARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHA 167

Query: 205 RYGEDTLSV-YREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDM-KSSENCQPD 261
           +  +D ++V    M E G++     Y+T+L ++C D   +  A ++   M K S  C P+
Sbjct: 168 KRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCED-SRSQRALDLLHTMVKKSGGCSPN 226

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             +++++I      G+VS+A  +F+EM++ G  P++   +S I    KA+  D     L 
Sbjct: 227 VVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLR 286

Query: 322 RLPELGITPDDRFCGCLLN 340
           ++   G  PD     C+++
Sbjct: 287 QMISNGFEPDKVTYNCMIH 305


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 3/233 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+VE A  L     ++    D   ++TLI LY   G     L+V + M+  G+KP+++
Sbjct: 212 KSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIV 271

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+    +  R  +   ++KE+ D   +PN  TY +L+  Y R    +  L +  EM
Sbjct: 272 TYNSLIHGFCKEGRMREAMRLFKEIRDA--TPNHVTYTTLIDGYCRLNDLDQALRLREEM 329

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+  +V  YN++L    ++G   +A ++  +M S +  +PD+ T +++I      G 
Sbjct: 330 EAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEM-SEKKIEPDNVTCNTLINAYCKIGD 388

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +  A  + N M+EAG + + F   +LI  + K +  D     L  + + G +P
Sbjct: 389 MKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSP 441



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 3/212 (1%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           I+ + FS L+ +Y         + V+E M   G +P++     LL+++ + +    V  +
Sbjct: 128 INSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKV 187

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           YK+M   G+  N + Y  L+ A  ++   E   ++  EM+ K +   +  YNTL+++   
Sbjct: 188 YKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCK 247

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA  + +D    E  +PD  T++S+I      G++ EA  +F E+ +A   PN  
Sbjct: 248 KGMHYEALSV-QDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDA--TPNHV 304

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             T+LI  Y +    D  +R    +   G+ P
Sbjct: 305 TYTTLIDGYCRLNDLDQALRLREEMEAQGLYP 336



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 5/204 (2%)

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           D    VY++M  IGV+ N+  YN L+    ++    +   +  EM    + P+  TY +L
Sbjct: 182 DMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTL 241

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           +  Y +     + LSV   M+ +G++  +  YN+L+      G   EA  +F++++ +  
Sbjct: 242 ISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDA-- 299

Query: 258 CQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             P+  T++++I    CR   + +A  +  EM   G  P +    S+++   +  R  D 
Sbjct: 300 -TPNHVTYTTLID-GYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDA 357

Query: 317 VRALNRLPELGITPDDRFCGCLLN 340
            + LN + E  I PD+  C  L+N
Sbjct: 358 NKLLNEMSEKKIEPDNVTCNTLIN 381



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 108/229 (47%), Gaps = 3/229 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           +M + +Y +        + + ++ LI     +G+ +   N+  EM++  V P++ TYN L
Sbjct: 182 DMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTL 241

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +    +    ++  ++   M   G+ P+  TY SL+  + +     + + +++E+++   
Sbjct: 242 ISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDATP 301

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
              VT Y TL+     +   D+A  + E+M+ ++   P   T++S++      G++ +A 
Sbjct: 302 N-HVT-YTTLIDGYCRLNDLDQALRLREEME-AQGLYPTVVTYNSILRKLCEIGRIRDAN 358

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + NEM E   EP+     +LI  Y K       ++  NR+ E G+  D
Sbjct: 359 KLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLD 407



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 108/271 (39%), Gaps = 44/271 (16%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G +  A  L+   R+      PN   ++TLI  Y    + D  L + EEM+A G+ P 
Sbjct: 282 KEGRMREAMRLFKEIRDAT----PNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPT 337

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++TYN++L  +    R      +  EM++  + P+  T  +L+ AY +    +  L V  
Sbjct: 338 VVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKN 397

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSC 274
            M E G++L                                    D +T+ ++I   C  
Sbjct: 398 RMVEAGLKL------------------------------------DQFTYKALIHGFCKI 421

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           R ++  A+ +   ML+AGF P+    + L+  Y   Q  + V++  +     G+  D   
Sbjct: 422 R-EMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSL 480

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLG 365
              L+    +  + +  K +  + +    LG
Sbjct: 481 YRALIRRFCKREQVDYAKKIFSLMQEKGTLG 511



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 65/155 (41%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ A  + +R      ++D   +  LI  +      DG   +   M   G  P+  
Sbjct: 385 KIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYC 444

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+D     +    V  +  E    GL  + + Y +L+R + +    +    ++  M
Sbjct: 445 TYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLM 504

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           +EKG      +Y +L      +G  + A ++ ++M
Sbjct: 505 QEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEM 539


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 128/280 (45%), Gaps = 12/280 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN+  A  ++D+ R    R +   ++TLI  +   G  +    V  EM   G  P+++
Sbjct: 359 KAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVV 418

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+       R  +   I + M + GL P+  +Y++++  + R R       +  EM
Sbjct: 419 TYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEM 478

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            EKG+      Y++L+  +C       EAF++F +M       PD  T++S+I      G
Sbjct: 479 VEKGVLPDTVTYSSLIQGLCLQQKLV-EAFDLFREMM-RRGLPPDEVTYTSLINAYCVDG 536

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++S+A  + +EM++ GF P+    + LI    K  RT    R L +L      PDD    
Sbjct: 537 ELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDD---- 592

Query: 337 CLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 376
              N + +       K VE + K     G+ +K L+ E D
Sbjct: 593 VTYNTLIENCSNNEFKSVEGLVK-----GFCMKGLMNEAD 627



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 5/234 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G++E   G   +   EK  I PN   ++TLI            + +   M   GV  N+I
Sbjct: 221 GDLEKGLGFMRKM--EKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLI 278

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN++++ +    R  +V  + +EM   GL P+  TY +L+  + +       L +  EM
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG+  +V  Y TL+      G    A EIF+ M+     +P+  T++++I     +G 
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMR-VRGLRPNERTYTTLIDGFCQKGL 397

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++EA  + +EM+ +GF P++    +L+  Y    R  + V  L  + E G+ PD
Sbjct: 398 MNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPD 451



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 110/279 (39%), Gaps = 34/279 (12%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L +  R +    D   ++TL+  +   GN    L +  EM   G+ PN++TY  L++ M 
Sbjct: 299 LVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMC 358

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +A    +   I+ +M   GL PN  TY +L+  + +     +   V  EM   G   SV 
Sbjct: 359 KAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVV 418

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKS--------------------------------- 254
            YN L+     +G   EA  I   M                                   
Sbjct: 419 TYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEM 478

Query: 255 -SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
             +   PD+ T+SS+I     + K+ EA  +F EM+  G  P+    TSLI  Y      
Sbjct: 479 VEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGEL 538

Query: 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
              +R  + + + G  PD+     L+N + +  + ++ K
Sbjct: 539 SKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAK 577



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 97/198 (48%), Gaps = 1/198 (0%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           ++D    V+ +M   GV PN+ TYN ++  +       +     ++M   G+SPN  TY 
Sbjct: 187 DYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYN 246

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +L+ A  + +  ++ +++ R M   G+  ++  YN+++      G   E  E+ E+M+  
Sbjct: 247 TLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRG- 305

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           +   PD  T+++++      G + +   + +EM+  G  PN+   T+LI C  KA     
Sbjct: 306 KGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSR 365

Query: 316 VVRALNRLPELGITPDDR 333
            V   +++   G+ P++R
Sbjct: 366 AVEIFDQMRVRGLRPNER 383



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 19/242 (7%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ A G+           D  ++ST+I  +           + EEM   GV P+ +TY
Sbjct: 431 GRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTY 490

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           ++L+  +   ++  +   +++EM   GL P+  TY SL+ AY         L ++ EM +
Sbjct: 491 SSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQ 550

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS------ 273
           +G       Y+ L+        T  A  +   +   E+  PD  T++++I  CS      
Sbjct: 551 RGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESV-PDDVTYNTLIENCSNNEFKS 609

Query: 274 ---------CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
                     +G ++EA+ +F  ML+   +PN  +   +I  +    R  +V +A N   
Sbjct: 610 VEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGH---SRGGNVHKAYNLYM 666

Query: 325 EL 326
           EL
Sbjct: 667 EL 668



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 185 NGLSPNWNTYASLLRAYGR-----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +G +P   +Y ++L A  R      R  +D   V+R+M   G+  +V  YN ++      
Sbjct: 161 HGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQ 220

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++       M+  E   P+  T++++I     + KV EA A+   M   G   NL  
Sbjct: 221 GDLEKGLGFMRKME-KEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLIS 279

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             S+I       R  +V   +  +   G+ PD+     L+N
Sbjct: 280 YNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVN 320


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 116/238 (48%), Gaps = 6/238 (2%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           ++++  ++    ++ L+ L    G  D    +Y EM    V  ++ T+N +++   +   
Sbjct: 148 SKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGF 207

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
             + K    +M   GLSP++ T  S +  Y R++  +    V+ EM  +  ++S   YN 
Sbjct: 208 VKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRN-EVS---YNQ 263

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           L+    + G  DEA  +F  MK  + C P+ +T++++I    CR  V +A  + +EMLE 
Sbjct: 264 LIHGLCEAGRIDEAVSLFVRMKD-DCCYPNVYTYTALIK-GLCRKNVHKAMGLLDEMLER 321

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
              P+L    SLI    +A   D   R L+ + E G+ PD R  GC ++ + ++ + E
Sbjct: 322 NLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVE 379



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 109/233 (46%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG+++ A+ L    +      D   +   I     +   +    +++ +   GV  N+I
Sbjct: 339 RAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVI 398

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+ L+D   +  +  +   ++++M     SPN  T+ +L+     A   ++ LS++ +M
Sbjct: 399 MYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQM 458

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G++ +V  +N L+      G  D+A +  + M SS   +P + T+++ I +    GK
Sbjct: 459 VKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGE-KPVARTYNAFIEVYCSAGK 517

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           V EAE M  +M E G  P+ F  TSLI+ YGK   T      L  + +    P
Sbjct: 518 VQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEP 570



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 137/334 (41%), Gaps = 35/334 (10%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AGN++ A  L+D+      +     F+ LI      G+FD      ++M + G KP   T
Sbjct: 445 AGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVART 504

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN  ++    A +  + + +  +M + G+ P+  TY SL++AYG+         V + M 
Sbjct: 505 YNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMF 564

Query: 219 EKGMQLSVTLYNTLLAMCADVGYT-----------------------------DEAFEIF 249
           +   + S   + +L+    D  Y                              D   E+F
Sbjct: 565 DADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELF 624

Query: 250 EDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           E+M+    C PDS  +  +I+ IC     +  A  + ++M + G  P+  V  ++I C  
Sbjct: 625 EEMEK-HGCTPDSKCYEKLISGICKVEN-LGIALKLLDQMQKEGISPSEMVFNAVISCCC 682

Query: 309 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV 368
           K Q+  +    +  +   G +P    C  L+  + +  + E G     V K     GY  
Sbjct: 683 KLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGN---SVFKKLRGCGYND 739

Query: 369 KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCN 402
             +  +  I+G  K+   E F+ + ++++K  CN
Sbjct: 740 DEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCN 773



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 136/362 (37%), Gaps = 45/362 (12%)

Query: 88  SKLKEKSYD------TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 141
           +KL  K Y+       R G V+    LY     E   +D   F+ +I +Y   G      
Sbjct: 153 TKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAK 212

Query: 142 NVYEEMKAIGVKPNMIT-------------------------------YNNLLDTMGRAK 170
               +M   G+ P+  T                               YN L+  +  A 
Sbjct: 213 QFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAG 272

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
           R  +  +++  M D+   PN  TY +L++   R       + +  EM E+ +   +  YN
Sbjct: 273 RIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNV-HKAMGLLDEMLERNLVPDLITYN 331

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           +L+A     G+ D A+ +   MK      PD  T+   I       +V EA  +F+ + E
Sbjct: 332 SLIAGQCRAGHLDSAYRLLSLMK-ERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTE 390

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--KE 348
            G   N+ + + LI  Y K  + D+      ++     +P+      L++ +      KE
Sbjct: 391 EGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKE 450

Query: 349 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDF---KKEATELFNSISKDVKKAYCNCLI 405
            L    + V+       Y   +L+     +GDF    K   ++ +S  K V + Y N  I
Sbjct: 451 ALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTY-NAFI 509

Query: 406 DL 407
           ++
Sbjct: 510 EV 511


>gi|297794571|ref|XP_002865170.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311005|gb|EFH41429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 468

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 119/232 (51%), Gaps = 5/232 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLIK Y      D    V   M+  G++P++ TYN+L+    +     +V  ++
Sbjct: 47  DVITYNTLIKGYSRFIGIDEAYAVTRRMREAGIEPDVATYNSLISGAAKNLMLNRVLQLF 106

Query: 180 KEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            EM  +GLSP+  +Y +L+  Y R  ++GE    ++ +++  G+   V  YN LL     
Sbjct: 107 DEMLHSGLSPDMWSYNTLMSCYFRLGKHGEAFRILHEDIRLAGLVPGVDTYNILLDALCK 166

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            G+TD A E+F+ +KS    +P+  T++ +I  +C  R +V     M  E+ +AG+ PN 
Sbjct: 167 SGHTDNAIELFKHLKS--RVKPELMTYNILINGLCKSR-RVGSVNWMLRELRKAGYTPNA 223

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
              T++++ Y K +R +  +    ++ + G T D      +++ + +T + E
Sbjct: 224 VTYTTMLKMYFKTKRIEKGLELFLKMKKEGYTFDGYANCAVVSALIKTGRAE 275



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L+     +G+ D  + +++ +K+  VKP ++TYN L++ + +++R   V  + +E
Sbjct: 155 DTYNILLDALCKSGHTDNAIELFKHLKS-RVKPELMTYNILINGLCKSRRVGSVNWMLRE 213

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +   G +PN  TY ++L+ Y + +  E  L ++ +MK++G          +++     G 
Sbjct: 214 LRKAGYTPNAVTYTTMLKMYFKTKRIEKGLELFLKMKKEGYTFDGYANCAVVSALIKTGR 273

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            +EA+    ++  S     D  ++++++ +    G +   + +  E+   G +P+ +  T
Sbjct: 274 AEEAYGCMNELVRSGTRSQDIVSYNTLLNMYFKDGNLDAVDDLLEEIEMKGLKPDDYTHT 333

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            ++    K   T    + L R+ E+G+ P    C CL++
Sbjct: 334 IIVNGLLKIGHTGGAEKHLARIGEMGMQPSIATCNCLID 372



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 91/186 (48%), Gaps = 9/186 (4%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           MK  G+   ++  N  +D++ + +   + +T+  +    G+ P+  TY +L++ Y R   
Sbjct: 6   MKFPGISTKLL--NISVDSLCKFRNLEKAETLLIDGIRLGVLPDVITYNTLIKGYSRFIG 63

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            ++  +V R M+E G++  V  YN+L++  A     +   ++F++M  S    PD W+++
Sbjct: 64  IDEAYAVTRRMREAGIEPDVATYNSLISGAAKNLMLNRVLQLFDEMLHS-GLSPDMWSYN 122

Query: 267 SMITICSCRGKVSEAEAMFNEMLE-AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL-- 323
           ++++     GK  EA  + +E +  AG  P +     L+    K+  TD+ +     L  
Sbjct: 123 TLMSCYFRLGKHGEAFRILHEDIRLAGLVPGVDTYNILLDALCKSGHTDNAIELFKHLKS 182

Query: 324 ---PEL 326
              PEL
Sbjct: 183 RVKPEL 188


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 119/259 (45%), Gaps = 5/259 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A+ L+   +N+    +   ++ LI     +G     + ++  M   GV PN +TY
Sbjct: 504 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 563

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++ +   +R      +   M  NGL  N  TY  +++ Y      +  + V   M +
Sbjct: 564 NALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 623

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G   ++  YNT++    D G T  A  I + M+    C+PD W+++ +I       K+ 
Sbjct: 624 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG-GCKPDEWSYTELICGFCKISKME 682

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A  +FNEM++ G  PN    T+LI  Y K ++ D     L  +   G  P+ +    L+
Sbjct: 683 SAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLI 742

Query: 340 NVMTQ----TPKEELGKLV 354
           + +T+    +  EEL K++
Sbjct: 743 HGLTKQNNFSGAEELCKVM 761



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 1/209 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++T+IK Y  +GN    L + + M+  G KP+  +Y  L+    +  +      ++ EM 
Sbjct: 633 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 692

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D+GL PN  TY +L+  Y +    +   S+   MK  G + +V  YN L+          
Sbjct: 693 DDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFS 752

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E+ + M   E   P+  T+++MI      G  S A  MFN+M+E G  PNL   +SL
Sbjct: 753 GAEELCKVM-IEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 811

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDD 332
           I+  G+  + ++       L   G+ PD+
Sbjct: 812 IRALGQEGKVEEAENLFAELERHGLIPDE 840



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 134/297 (45%), Gaps = 13/297 (4%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R+   A+S L+      G     ++ Y  M + GV+PN++ YN +++ + +       +T
Sbjct: 347 RMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAET 406

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           I K++ ++ +SP+  TY S++  + R    +  L V+ +M ++G + +   Y+TL+    
Sbjct: 407 IMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 466

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           D G  +EAF++  +M       P + T +  I      G   +A  +F +M   G EPN+
Sbjct: 467 DSGRVNEAFDLIREM-ILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNV 525

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
           +  T+LI     +      +   +R+   G+ P+      L+N++ +  + +   +V  +
Sbjct: 526 YTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNL 585

Query: 358 EKSNSKLGYVVKL--LLEEQDIEGDFKKEATELFNSISKD----------VKKAYCN 402
              N     +V    +++   I GD KK    + N + +           + K YC+
Sbjct: 586 MGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 642



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 7/266 (2%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAF 124
           G   K+ + +N    R       +Y+T       +GN   A  + D  R+   + D  ++
Sbjct: 609 GDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSY 668

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + LI  +      +    ++ EM   G+ PN +TY  L+D   + ++     ++ + M  
Sbjct: 669 TELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKR 728

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
           +G  PN  TY  L+    +         + + M E+G+  +V  Y  ++      G T  
Sbjct: 729 SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 788

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A E+F  M   + C P+  T+SS+I      GKV EAE +F E+   G  P+      +I
Sbjct: 789 ALEMFNKM-IEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMI 847

Query: 305 QCYGKAQRTDDVVRALNRLPELGITP 330
           + Y  + + +     L R+ + G  P
Sbjct: 848 EAYIMSGKVEHAFNFLGRMIKAGCQP 873



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 109/268 (40%), Gaps = 36/268 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV  A  +  +    +   D   ++++I  +    + D  L V+ +M   G +PN +TY
Sbjct: 399 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 458

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L++ +  + R  +   + +EM  +G+ P  +T    + A       ED   ++ +MK 
Sbjct: 459 STLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKN 518

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC------- 272
           KG + +V  Y  L++     G    A  +F  M S +   P++ T++++I I        
Sbjct: 519 KGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVFPNTVTYNALINILVENRRIK 577

Query: 273 ----------------------------SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
                                          G   +A  + N ML+ G   NL    ++I
Sbjct: 578 YAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTII 637

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDD 332
           + Y  +  T   +R L+ + + G  PD+
Sbjct: 638 KGYCDSGNTTSALRILDLMRDGGCKPDE 665



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A  L +  +    R +   ++ LI       NF G   + + M   G+ PN++TY  
Sbjct: 716 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 775

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++D + +         ++ +M + G  PN  TY+SL+RA G+    E+  +++ E++  G
Sbjct: 776 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 835

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +      Y  ++      G  + AF     M  +  CQP  WT+  +I
Sbjct: 836 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA-GCQPTLWTYGVLI 882



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 8/218 (3%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVG 240
           ++ +GL      Y++LL    R       +  Y  M  +G+Q ++ +YN ++ A+C D G
Sbjct: 341 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKD-G 399

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFV 299
              +A  I + +  SE   PD++T++SMI +  CR   +  A  +FN+M + G EPN   
Sbjct: 400 NVADAETIMKKVFESEM-SPDTFTYTSMI-LGHCRKHDLDSALQVFNQMAKEGCEPNTVT 457

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC-GCLLNVMTQTPKEELGKL-VECV 357
            ++LI     + R ++    +  +   GI P    C G ++ +      E+  +L V+  
Sbjct: 458 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 517

Query: 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            K      Y    L+    + G   K A  LF+ +S+D
Sbjct: 518 NKGCEPNVYTYTALISGLCVSG-LLKVAIGLFHRMSRD 554


>gi|298711207|emb|CBJ32428.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 870

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 1/240 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V+ A GL    R+E        ++ L++L G  G +   L +   M+  G+ PN   YN+
Sbjct: 126 VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELMGMMEDEGITPNPYHYNS 185

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +   + R +R  +   ++++M   G  PN  TYA L+    R    +   +V +EM  + 
Sbjct: 186 MFMALERGERWREAAELFRKMRACGTRPNALTYAPLIGVMDRCNKQDMAGAVLKEMLRES 245

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            + S   YN LL  CA     + A  +FEDMK     +PD+ T++++I      G+V EA
Sbjct: 246 PRDSTREYNLLLNACAKARKWEHAQLVFEDMKKKAGVKPDNVTYNTVINALGRCGRVKEA 305

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLN 340
               + M E G  P++    +LI    ++ + +  +     L   G+ P+ + + GC+++
Sbjct: 306 TVHLHAMKEQGLSPDVVTFGTLIHACAQSAKREPALALFAELVSRGLKPNLEAYKGCIVS 365



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-IGVKPNM 156
           R    +MA  +      E  R     ++ L+     A  ++    V+E+MK   GVKP+ 
Sbjct: 227 RCNKQDMAGAVLKEMLRESPRDSTREYNLLLNACAKARKWEHAQLVFEDMKKKAGVKPDN 286

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN +++ +GR  R  +       M + GLSP+  T+ +L+ A  ++   E  L+++ E
Sbjct: 287 VTYNTVINALGRCGRVKEATVHLHAMKEQGLSPDVVTFGTLIHACAQSAKREPALALFAE 346

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +  +G++ ++  Y   +  C   G+  +  ++F  M  ++  + D   F++ I  C+   
Sbjct: 347 LVSRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRM-LADKVRMDRVVFNTAIACCAQLK 405

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                 AM +EM E    P+ +   S I    KAQ++  +   L R+ E G  PD
Sbjct: 406 LWRRGVAMLDEMRERKVAPDQYSYNSAIYGCVKAQQSQQMTMVLARMREDGFDPD 460



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 2/212 (0%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN  A+   I      G++   L+++  M A  V+ + + +N  +    + K   +  
Sbjct: 352 LKPNLEAYKGCIVSCHKTGHYQQGLDLFNRMLADKVRMDRVVFNTAIACCAQLKLWRRGV 411

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM +  ++P+  +Y S +    +A+  +    V   M+E G    V  Y+ L+   
Sbjct: 412 AMLDEMRERKVAPDQYSYNSAIYGCVKAQQSQQMTMVLARMREDGFDPDVWTYSNLIRCL 471

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           AD      A  I +DM      QPD+  F++ +  CS  G+ +EAE +   M   G  P+
Sbjct: 472 ADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVGEWAEAERLVTGMRGQGLAPD 531

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
            +   SLI  YG +   +  +  L  +   G 
Sbjct: 532 KYTYNSLIYAYGNSGEWEKALSMLEEIRAAGF 563



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 111 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRA 169
           R R + +  D   +S LI+    +  +   + + ++M   G V+P+   +N  +    + 
Sbjct: 451 RMREDGFDPDVWTYSNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKV 510

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               + + +   M   GL+P+  TY SL+ AYG +   E  LS+  E++  G +++   Y
Sbjct: 511 GEWAEAERLVTGMRGQGLAPDKYTYNSLIYAYGNSGEWEKALSMLEEIRAAGFKVNCMAY 570

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +  +  C      + A E+ + M      +P+ + ++  ++ C
Sbjct: 571 SAAIKACDKAFQWERALELLDRMVERGGVKPNLFAYNHAMSAC 613



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 83/231 (35%), Gaps = 28/231 (12%)

Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKT---IYKEMTDNGLSPNWNTYASLLRAYGRAR 205
            +G  P   TY   L+  G+ ++ W  K    + +EM D  L  +   Y   + A    R
Sbjct: 45  GVGWAPTEETYGLALEACGKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTR 104

Query: 206 YGEDTLSVYREMKEKGMQLSVT--------------------LYNTLLAMCADVGYTDEA 245
                L +  EM+++G+   V                      YN LL +C   G     
Sbjct: 105 QLSGVLPLLDEMRDRGVAADVVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATG 164

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            E+   M   E   P+ + ++SM        +  EA  +F +M   G  PN      LI 
Sbjct: 165 LELM-GMMEDEGITPNPYHYNSMFMALERGERWREAAELFRKMRACGTRPNALTYAPLIG 223

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDD--RFCGCLLNVMTQTPKEELGKLV 354
              +  + D     L  +  L  +P D  R    LLN   +  K E  +LV
Sbjct: 224 VMDRCNKQDMAGAVLKEM--LRESPRDSTREYNLLLNACAKARKWEHAQLV 272



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 22/179 (12%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMI 157
           +G  E A  + +  R   ++++  A+S  IK    A  ++  L + + M +  GVKPN+ 
Sbjct: 545 SGEWEKALSMLEEIRAAGFKVNCMAYSAAIKACDKAFQWERALELLDRMVERGGVKPNLF 604

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKE-------------------MTDNGLSPNWNTYASL 197
            YN+ +    R   P+ + K ++ E                   + + G+  +W +  +L
Sbjct: 605 AYNHAMSACVRFSPPYSRRKELHGEGGGQGAVSPTSFCVPANLPVFEAGIPGDWYSNHAL 664

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           L A GR    E+ +  + + K +  +    T Y T+L +C   G+  +A E  ++M ++
Sbjct: 665 LEALGRGGRWEEAVKTFEDKKRQADRPPEQTCYKTMLRVCERAGFACQAVEYLKEMPAA 723


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 3/228 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  +DP+   F+TLI  YGTAG  + C  V  +M+  G+K ++I++ +++    +  + 
Sbjct: 253 EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKI 312

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   I  +M    ++PN   Y S++ AY  +   E    +  +MK  G+  S+  YN L
Sbjct: 313 PEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLL 372

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           L         DEA E+   +++ +  +PD  +++++I+ C  +G   +A  +  EM + G
Sbjct: 373 LKGLCRSSQIDEAEELIYTLRN-QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 431

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             P L    +L+     A R  D+     ++    + P     G +++
Sbjct: 432 IRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVD 479



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 40/271 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R+G    A  ++D   +    + PN   ++T+I  +   G+ +    + ++M   G KPN
Sbjct: 28  RSGKGSDALKVFDEMVD--MGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPN 85

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++TYN LL  + RA R  + + +  EM  + + P+  TY+ L     R       LS++ 
Sbjct: 86  IVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFA 145

Query: 216 EMKEKGMQL-----------------------------------SVTLYNTLLAMCADVG 240
           E  +KG+ L                                   +  +YNTL+     V 
Sbjct: 146 ESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVR 205

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
               AF IFE MK S + +PD  T++++I        V++AE +  EM ++G +P++   
Sbjct: 206 DLRGAFCIFEQMK-SRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETF 264

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +LI  YG A + +     L+ + + GI  D
Sbjct: 265 NTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD 295



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 105/208 (50%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y    +  G   ++E+MK+  ++P+ ITYN L++ + + +   + + +  EM 
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 253

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G+ P+  T+ +L+ AYG A   E   +V  +M++KG++  V  + +++      G   
Sbjct: 254 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 313

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  I +DM   ++  P++  ++S+I      G   +A  +  +M  +G   ++     L
Sbjct: 314 EAVAILDDM-IYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLL 372

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++   ++ + D+    +  L   G+ PD
Sbjct: 373 LKGLCRSSQIDEAEELIYTLRNQGLRPD 400



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+  ++ A  L    RN+  R D  +++T+I      G+ D  L + +EM   G++P + 
Sbjct: 378 RSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLR 437

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+  +  A R   ++ +Y++M    + P+ + Y  ++ AY R        S+ +EM
Sbjct: 438 TYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEM 497

Query: 218 KEKGMQLSVT 227
            EKG+    T
Sbjct: 498 SEKGIAFDDT 507



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 1/187 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+  +YN ++  + R+ +      ++ EM D G+ PNW TY +++  + +    E    +
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             +M   G + ++  YN LL+     G  DE   + ++M +S +  PD +T+S +    +
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEM-ASHSMFPDGFTYSILFDGLT 132

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G+     ++F E L+ G     +  + L+    K  +     + L  L   G+ P   
Sbjct: 133 RTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTV 192

Query: 334 FCGCLLN 340
               L+N
Sbjct: 193 IYNTLIN 199



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/267 (19%), Positives = 102/267 (38%), Gaps = 36/267 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG ++    L D   +     D   +S L       G     L+++ E    GV     
Sbjct: 98  RAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAY 157

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T + LL+ + +  +  + + + + +   GL P    Y +L+  Y + R       ++ +M
Sbjct: 158 TCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM 217

Query: 218 KEK-----------------------------------GMQLSVTLYNTLLAMCADVGYT 242
           K +                                   G+  SV  +NTL+      G  
Sbjct: 218 KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQL 277

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           ++ F +  DM+  +  + D  +F S++      GK+ EA A+ ++M+     PN  V  S
Sbjct: 278 EKCFTVLSDMQ-QKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 336

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGIT 329
           +I  Y ++  T+     + ++   G++
Sbjct: 337 IIDAYIESGDTEQAFLLVEKMKNSGVS 363


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 112/212 (52%), Gaps = 1/212 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G +++A   +   + +    +   F+ LI  Y  AG+ +  +++Y+EM+ + +  N++
Sbjct: 175 KSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVV 234

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D   +     + + +Y  M ++ + PN   Y +++  + +    ++ +    +M
Sbjct: 235 TYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKM 294

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +GM+L +T Y  +++     G   EA EI EDM+ S+   PD   F++M+      G+
Sbjct: 295 LNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSD-LVPDMVIFTTMMNAYFKSGR 353

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           +  A  M+++++E GFEP++  L+++I    K
Sbjct: 354 MKAAVNMYHKLIERGFEPDVVALSTMIDGIAK 385



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 147/318 (46%), Gaps = 14/318 (4%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +ST I  +  +G     L  +  MK   + PN++T+  L+D   +A       ++
Sbjct: 161 PNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSL 220

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           YKEM    +S N  TY +L+  + +    +    +Y  M E  ++ +  +Y T++     
Sbjct: 221 YKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQ 280

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G +D A +    M  ++  + D   +  +I+     GK+ EA  +  +M ++   P++ 
Sbjct: 281 RGDSDNAMKFLAKML-NQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMV 339

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           + T+++  Y K+ R    V   ++L E G  PD      +++ + +  +     +  C+E
Sbjct: 340 IFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIE 399

Query: 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV----KKAYCNCLIDLCVNLNLL 414
           K+N  + Y V  L++    EGDF  E   LF+ IS+      K  Y + +  LC   NL+
Sbjct: 400 KANDVM-YTV--LIDALCKEGDF-IEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLV 455

Query: 415 EN---ACKLLELGLTLEV 429
           +      ++++ GL L++
Sbjct: 456 DAFKLKTRMVQEGLLLDL 473



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 110/236 (46%), Gaps = 10/236 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G ++ A  +Y R   +  R++PN+  ++T+I  +   G+ D  +    +M   G++ +
Sbjct: 245 KKGEMQRAEEMYSRMVED--RVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLD 302

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +  Y  ++  +    +  +   I ++M  + L P+   + +++ AY ++   +  +++Y 
Sbjct: 303 ITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYH 362

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           ++ E+G +  V   +T++   A  G   EA   F   K+++        ++ +I      
Sbjct: 363 KLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKAND------VMYTVLIDALCKE 416

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G   E E +F+++ EAG  P+ F+ TS I    K     D  +   R+ + G+  D
Sbjct: 417 GDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLD 472



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 8/197 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM 156
           ++G ++ A  +Y +     +  D  A ST+I   G A N      ++E +    + K N 
Sbjct: 350 KSGRMKAAVNMYHKLIERGFEPDVVALSTMID--GIAKNG----QLHEAIVYFCIEKAND 403

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y  L+D + +     +V+ ++ ++++ GL P+   Y S +    +     D   +   
Sbjct: 404 VMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTR 463

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M ++G+ L +  Y TL+   A  G   EA ++F++M +S    PDS  F  +I      G
Sbjct: 464 MVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNS-GISPDSAVFDLLIRAYEKEG 522

Query: 277 KVSEAEAMFNEMLEAGF 293
            ++ A  +  +M   G 
Sbjct: 523 NMAAASDLLLDMQRRGL 539



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/278 (19%), Positives = 120/278 (43%), Gaps = 39/278 (14%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD----------------- 164
           ++F++++      G      ++   M   G +P++I+YN+L+D                 
Sbjct: 57  SSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLES 116

Query: 165 ---TMGRAKRPWQVK-----------------TIYKEMTDNGLSPNWNTYASLLRAYGRA 204
              + G   +P  V                   +Y  +     SPN  TY++ +  + ++
Sbjct: 117 LRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKS 176

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
              +  L  +  MK   +  +V  +  L+      G  + A  ++++M+       +  T
Sbjct: 177 GELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVR-MSLNVVT 235

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++++I     +G++  AE M++ M+E   EPN  V T++I  + +   +D+ ++ L ++ 
Sbjct: 236 YTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKML 295

Query: 325 ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361
             G+  D    G +++ +    K +E  ++VE +EKS+
Sbjct: 296 NQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSD 333


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 148/304 (48%), Gaps = 15/304 (4%)

Query: 99  AGNVEMAFGLYDRA-RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           AG+V  A  +  R  ++    +D  A + L+      G+      V++EM  +G+ PN +
Sbjct: 15  AGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEV 74

Query: 158 TYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           TY  L+    T G+ ++ +    +++EM   G+ PN  TY  L+  + R    E   S++
Sbjct: 75  TYTALMHGYFTHGQREKGF---ALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLF 131

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM  +G+  +V  YNTL+A     G   +A ++  DM  +E  +P   TF+ ++     
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLL-DMMRTEGTRPSIITFNLLVDGYGK 190

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            GK+S A   FN+M  AGF+P+      LI  + +A+      RAL+ + E G+ P    
Sbjct: 191 AGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVT 250

Query: 335 CGCLLNVMTQTPKEELGKLVECV---EKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFN 390
              L++   +  +  +GK  E +   EK+  ++  +   +L+    +EG+  K+A +LF 
Sbjct: 251 YTILIDSFAR--ENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNM-KDARKLFQ 307

Query: 391 SISK 394
           S+ +
Sbjct: 308 SMGE 311



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 2/293 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  E A  L+D         +  +++TLI      G       + + M+  G +P++I
Sbjct: 120 RTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSII 179

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+D  G+A +       + +M   G  P+  TY  L+  + RAR          +M
Sbjct: 180 TFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDM 239

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G++ +   Y  L+   A   +  +AFEI   M+ +   + D+ T+  ++      G 
Sbjct: 240 KERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKA-GLEVDAHTYGVLVRALCMEGN 298

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +A  +F  M E G EP+  +   +I  YG+   +   ++ +  + + G+ P+    G 
Sbjct: 299 MKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGL 358

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
            + V+ +  K +E   L++ +E   S  G+    +  + D +   + + TE F
Sbjct: 359 TIRVLCKDDKCQEAEALLDDMETIRSFAGHHQNFIASKSDSQQKDEDKCTEHF 411


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 110/215 (51%), Gaps = 2/215 (0%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           + D   ++ LIK     G  D  L ++ +M     KP++ITY  L+D + + K+      
Sbjct: 549 KADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLC 608

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           I+  M  N ++P+   Y  L+  + R  + E  L ++  + E+G +  V  +NT++    
Sbjct: 609 IFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYC 668

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           +    D+A ++F  M +SE  +P++ TF+ +I      G++ +A  MF++MLE G EPNL
Sbjct: 669 NFKRLDDAVQLFAKM-TSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNL 727

Query: 298 FVLTSLIQCYGKAQ-RTDDVVRALNRLPELGITPD 331
              + LI  Y K+Q   +  ++  N + E  I P+
Sbjct: 728 VTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPN 762



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 113/264 (42%), Gaps = 40/264 (15%)

Query: 107 GLYDRARNEKWRIDPN----AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           G+ D   N   RI P      FSTLI  Y   GN D    +++ M   GV P++I Y+ L
Sbjct: 289 GVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSIL 348

Query: 163 LDTMGRAKR-----------------------------------PWQVKTIYKEMTDNGL 187
           +D + +A R                                     +V  IYK M + G+
Sbjct: 349 IDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGI 408

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           SPN  + + L++ + +     +   ++ ++ + G + S+  Y+ L+A     G   + F 
Sbjct: 409 SPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFY 468

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           ++EDM   + C+PD+  +S +I     +G V +A   F + +  G  PN+F L +L+  +
Sbjct: 469 LYEDM-IKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSF 527

Query: 308 GKAQRTDDVVRALNRLPELGITPD 331
            + +     ++    +  L I  D
Sbjct: 528 CRLKCIVGAMKVYYLMGMLNIKAD 551



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 109/248 (43%), Gaps = 13/248 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++GN+   F LY+    ++   D   +S LI      G     L  + +    G+ PN+ 
Sbjct: 459 KSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVF 518

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYR 215
           T N LLD+  R K       +Y  M    +  +  TY  L++  G A++G  ++ L ++ 
Sbjct: 519 TLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIK--GAAQFGRVDEALMLFF 576

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M +K  +  V  Y TL+     +  +     IF D        PD   ++ +I + S  
Sbjct: 577 QMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIF-DFMCKNAVAPDIAIYNVLINMHSRE 635

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD---- 331
           G +  A  +F  ++E G +P++F   ++I CY   +R DD V+   ++    + P+    
Sbjct: 636 GHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITF 695

Query: 332 ----DRFC 335
               D FC
Sbjct: 696 TILIDAFC 703



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 110/246 (44%), Gaps = 7/246 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G V  A   + +A N    + PN F+  TL+  +       G + VY  M  + +K +
Sbjct: 494 KQGLVGDALRFFFQAVNRG--LSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKAD 551

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TY  L+    +  R  +   ++ +M      P+  TY +L+    + +     L ++ 
Sbjct: 552 TVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFD 611

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M +  +   + +YN L+ M +  G+ + A  +F  +      +PD +TF++MI  C C 
Sbjct: 612 FMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHV-VERGPKPDVFTFNTMIC-CYCN 669

Query: 276 GK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            K + +A  +F +M      PN    T LI  + +  R DD +   +++ E G  P+   
Sbjct: 670 FKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVT 729

Query: 335 CGCLLN 340
             CL++
Sbjct: 730 YSCLIH 735



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 2/204 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G++E A GL+        + D   F+T+I  Y      D  + ++ +M +  ++PN 
Sbjct: 633 SREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNA 692

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR-YGEDTLSVYR 215
           IT+  L+D   R  R      ++ +M + G  PN  TY+ L+  Y +++   E  L +Y 
Sbjct: 693 ITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYN 752

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM E  +  ++  Y+ L+      G   EA   F      ++  PD   ++ +I      
Sbjct: 753 EMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFR-CALDKHLLPDVIAYTILIRGYCKV 811

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFV 299
           G+++EA  +++ ML     P+ F+
Sbjct: 812 GRLTEAMMLYDNMLLNRLTPDRFL 835



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 120/268 (44%), Gaps = 7/268 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            + G++     +Y R  NE   I PN  S   LIK +   G       ++ ++  +G +P
Sbjct: 388 VKIGDLGRVIQIYKRMLNEG--ISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEP 445

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +++TY+ L+    ++        +Y++M      P+   Y+ L+    +     D L  +
Sbjct: 446 SILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFF 505

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +   +G+  +V   NTLL     +     A +++  M    N + D+ T++ +I   + 
Sbjct: 506 FQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLM-GMLNIKADTVTYTILIKGAAQ 564

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+V EA  +F +ML+  F+P++    +LI    K +++   +   + + +  + PD   
Sbjct: 565 FGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAI 624

Query: 335 CGCLLNVMTQTPKEE--LGKLVECVEKS 360
              L+N+ ++    E  LG  V  VE+ 
Sbjct: 625 YNVLINMHSREGHLEAALGLFVHVVERG 652


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 146/338 (43%), Gaps = 14/338 (4%)

Query: 101 NVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +V++ F +   A+  K  + P    F+TLI     AG F   L ++++M A G +P++ T
Sbjct: 141 HVDLGFSVL--AKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYT 198

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  +++ + +         + K+M + G  P+  TY++L+ +  + R   + L ++  MK
Sbjct: 199 YTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMK 258

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            KG+  +V  Y +L+          EA  +  +M +S N  PD  TFS +I I    G V
Sbjct: 259 AKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEM-TSLNIMPDIVTFSLLIDIFCKEGNV 317

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            EA+ +   M E G EPN+    SL+  Y       +  +  + +   G  PD      L
Sbjct: 318 LEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSIL 377

Query: 339 LN--VMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV 396
           +N   M +   E      E + +  +        L+      G   +EA ELF  +  + 
Sbjct: 378 INGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKL-REARELFKDMHTN- 435

Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 434
                  L DLC    LLE  CK   LG    ++  +Q
Sbjct: 436 -----GYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQ 468



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 1/221 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   FS LI ++   GN      V + M  +GV+PN+ITYN+L+          + + ++
Sbjct: 300 DIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLF 359

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M   G  P+  +Y+ L+  Y   +  ++   ++ EM  +G+  +   Y TL+     +
Sbjct: 360 DVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQL 419

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA E+F+DM ++    PD  T+S ++     +G + +A  +F  M     +PNL +
Sbjct: 420 GKLREARELFKDMHTN-GYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVM 478

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            T LI    K+   +   +  + L   G+ PD +    ++N
Sbjct: 479 YTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIIN 519



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 98/196 (50%), Gaps = 2/196 (1%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTY 194
           N D  L  +  M      P +I +N LL  + R ++ +  V ++ K+M   GLSPN  T 
Sbjct: 70  NIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTL 129

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
             L+  +   ++ +   SV  ++ + G+Q ++  + TL+      G   +A E+F+DM  
Sbjct: 130 NILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDM-V 188

Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           +  CQPD +T++++I      G+ + A  +  +M E G +P++   ++LI    K +  +
Sbjct: 189 ARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVN 248

Query: 315 DVVRALNRLPELGITP 330
           + +   + +   GI+P
Sbjct: 249 EALDIFSYMKAKGISP 264



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 101/225 (44%), Gaps = 1/225 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+D       + D  ++S LI  Y      D    ++ EM   G+ PN ++Y  L+    
Sbjct: 358 LFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFC 417

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +  +  + + ++K+M  NG  P+  TY+ LL  + +  Y      ++R M+   ++ ++ 
Sbjct: 418 QLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLV 477

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +Y  L+      G  + A ++F ++      QPD   ++++I      G + EA   F +
Sbjct: 478 MYTILIDSMCKSGNLNHARKLFSEL-FVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRK 536

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           M E G  PN F    +I+ + + +     V+ +  + + G   D+
Sbjct: 537 MEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADE 581



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 62/134 (46%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  A  L+       +  D   +S L++ +   G       ++  M+   +KPN++ Y
Sbjct: 420 GKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMY 479

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+D+M ++      + ++ E+  +GL P+   Y +++    +    ++ L  +R+M+E
Sbjct: 480 TILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEE 539

Query: 220 KGMQLSVTLYNTLL 233
            G   +   YN ++
Sbjct: 540 DGCPPNEFSYNVII 553


>gi|412985631|emb|CCO19077.1| pentatricopeptide repeat-containing protein [Bathycoccus prasinos]
          Length = 1001

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 110/213 (51%), Gaps = 10/213 (4%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           A++TLIK  G +GN    L V+E M ++ GV+PN  T + LL+ +GR +   +   +Y+ 
Sbjct: 231 AYTTLIKWVGKSGNCSKALEVFECMGSVHGVEPNTYTCSALLNALGRHRMGQEAWEVYEM 290

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC--ADV 239
           M +  +  N  TY +L+ A+ ++R  +    VY E+KE G+Q+    Y  +LA C   + 
Sbjct: 291 MKEKNIECNIFTYTALITAFQKSREQDRVYQVYDELKESGIQIDSITYAAMLAACEKGET 350

Query: 240 GY---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           G    T++A  +F DMK S    P+   +  ++T C   G+V +   +  EM++     +
Sbjct: 351 GTGECTEKALRVFADMKKS-GVDPNQQCYQFLMTCCEKGGRVDKCFELHGEMVKHKHVVD 409

Query: 297 LFVLTSLIQCYGKA---QRTDDVVRALNRLPEL 326
             +  SLI   GK    Q+  +V ++L    E+
Sbjct: 410 KNIYQSLIAVCGKKGMWQKAIEVYKSLKTKKEV 442



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           T  V R +KE   +     Y TL+      G   +A E+FE M S    +P+++T S+++
Sbjct: 213 TGEVKRALKESIFKPLAPAYTTLIKWVGKSGNCSKALEVFECMGSVHGVEPNTYTCSALL 272

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                     EA  ++  M E   E N+F  T+LI  + K++  D V +  + L E GI 
Sbjct: 273 NALGRHRMGQEAWEVYEMMKEKNIECNIFTYTALITAFQKSREQDRVYQVYDELKESGIQ 332

Query: 330 PDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
            D      +L       K E G   EC EK+
Sbjct: 333 IDSITYAAML---AACEKGETG-TGECTEKA 359


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 113/212 (53%), Gaps = 4/212 (1%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P  ++ ++ L G    FD   +V + MK+ GV+  + T++ L+    RA    +    + 
Sbjct: 178 PEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFN 237

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
            M D G +P+   ++ ++ +  + R   +  S +  +K +  +  V +Y +L+      G
Sbjct: 238 RMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHR-FEPDVVVYTSLVHGWCRAG 296

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              +A E+F DMK +   +P+ +T+S +I ++C C G+++ A  +F+EM++AG +PN   
Sbjct: 297 DISKAEEVFSDMKMA-GIKPNVYTYSIVIDSLCRC-GQITRAHDVFSEMIDAGCDPNAVT 354

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SL++ + KA RT+ V++  N++  LG   D
Sbjct: 355 FNSLMRVHVKAGRTEKVLKVYNQMKRLGCPAD 386



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 111/219 (50%), Gaps = 5/219 (2%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K R +P+   +++L+  +  AG+      V+ +MK  G+KPN+ TY+ ++D++ R  +  
Sbjct: 275 KHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQIT 334

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++ EM D G  PN  T+ SL+R + +A   E  L VY +MK  G       YN ++
Sbjct: 335 RAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFII 394

Query: 234 -AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            + C D    +EA +I  ++   +   P++ TF+ +    +    V+ A  M+  M E  
Sbjct: 395 ESHCRDENL-EEAAKIL-NLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELN 452

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +PN      L++ + +++ TD V++    + E  + P+
Sbjct: 453 CQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPN 491



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 92/197 (46%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG  E    +Y++ +      D  +++ +I+ +    N +    +   M   GV PN 
Sbjct: 363 VKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNA 422

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T+N +   + +         +Y  M +    PN  TY  L+R +  +R  +  L + +E
Sbjct: 423 STFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKE 482

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E  ++ +V  Y  L++M  D+ + + A+++  +M   +  +P+   + +++ +    G
Sbjct: 483 MDESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAG 542

Query: 277 KVSEAEAMFNEMLEAGF 293
           ++ + E + ++M+  GF
Sbjct: 543 QLKKHEELVDKMVARGF 559



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 95/210 (45%), Gaps = 1/210 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG++  A  ++   +    + +   +S +I      G      +V+ EM   G  PN +
Sbjct: 294 RAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAV 353

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N+L+    +A R  +V  +Y +M   G   +  +Y  ++ ++ R    E+   +   M
Sbjct: 354 TFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLM 413

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG+  + + +N +    A +   + A  ++  MK   NCQP++ T++ ++ + +    
Sbjct: 414 VKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKEL-NCQPNTLTYNILMRMFAESRS 472

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
                 M  EM E+  EPN+     LI  +
Sbjct: 473 TDMVLKMKKEMDESQVEPNVNTYRILISMF 502



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 95/198 (47%), Gaps = 16/198 (8%)

Query: 159 YNNLLDTMGRAKR---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           YN +LD  G+ ++    W V  +   M   G+    +T+++L+R Y RA    + +  + 
Sbjct: 181 YNEMLDLAGKLRQFDLAWHVIDL---MKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFN 237

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M++ G    +  ++ +++        +EA   F+ +K     +PD   ++S++      
Sbjct: 238 RMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLK--HRFEPDVVVYTSLVHGWCRA 295

Query: 276 GKVSEAEAMFNEMLEAGFEPNLF----VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G +S+AE +F++M  AG +PN++    V+ SL +C G+  R  DV    + + + G  P+
Sbjct: 296 GDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRC-GQITRAHDV---FSEMIDAGCDPN 351

Query: 332 DRFCGCLLNVMTQTPKEE 349
                 L+ V  +  + E
Sbjct: 352 AVTFNSLMRVHVKAGRTE 369


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 148/322 (45%), Gaps = 22/322 (6%)

Query: 30  DDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGS-SPKSYIWVNPKSPRAS 88
           D+ LS ++ TSL K +V         PTK      + H K  S +P++Y  +     R  
Sbjct: 73  DELLSSFT-TSLSKTTVFQTLRHIKVPTKAFLFFNWIHEKGFSHNPQTYFIMLEILGREK 131

Query: 89  KLKEKSYDTRAGNVEMAFGLY--DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 146
            L          N+   F LY  ++  N + +++   F++LI+ YG AG F   + ++E 
Sbjct: 132 NL----------NIARNF-LYSIEKRSNGEVKLEDRFFNSLIRSYGEAGLFKESVKLFEN 180

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRAR 205
           MK IGV P ++T+N++L  + +  R    K +Y EM    G+ P+  TY  L+R + +  
Sbjct: 181 MKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNS 240

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWT 264
             ++    ++EM        V  YNTL+      G    A  +   M K  ++  PD  T
Sbjct: 241 MVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVT 300

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++++I     + +V EA  +  EM   G +PN+    +LI+   +AQ+ D +   L ++ 
Sbjct: 301 YTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMK 360

Query: 325 -ELGITPDDRFCGCLLNVMTQT 345
            + G  PD     C  N +  +
Sbjct: 361 GDGGSIPD----ACTFNTLINS 378



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 11/228 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPN 155
           + G   MA  +YD    + + + P+ ++  I + G   N   D     ++EM +    P+
Sbjct: 202 KRGRTNMAKEVYDEML-KTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPD 260

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDN--GLSPNWNTYASLLRAYGRARYGEDTLSV 213
           ++TYN L+D + RA +      +   M+     LSP+  TY +L+R Y R +  ++ L +
Sbjct: 261 VVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDI 320

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             EM  +G++ ++  YNTL+    +    D+  EI E MK      PD+ TF+++I    
Sbjct: 321 LEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHC 380

Query: 274 CRGKVSEAEAMFNEM--LEAGFEPNLFVLTSLIQC----YGKAQRTDD 315
           C G + EA  +F  M  LE   +   + +     C    YGKA+   D
Sbjct: 381 CAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFD 428



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 9/204 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG +++A  L +    +   + P+   ++TLI+ Y      D  L++ EEM   G+KPN
Sbjct: 273 RAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPN 332

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++TYN L+  +  A++  ++K I ++M  D G  P+  T+ +L+ ++  A   ++   V+
Sbjct: 333 IVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVF 392

Query: 215 REMKEKGMQLSVTLYNTLL-AMC--ADVGYTDEAF-EIFED--MKSSENCQPDSWTFSSM 268
             MK+  +      Y+ L+  +C   D G  +  F E+FE   + SS   +P + ++  M
Sbjct: 393 ENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCM 452

Query: 269 ITICSCRGKVSEAEAMFNEMLEAG 292
                  GK  +AE +  ++++ G
Sbjct: 453 FQYLCENGKTKKAERVLRQLMKRG 476



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 95/236 (40%), Gaps = 31/236 (13%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           DP ++  +I  +   G+++    +   M      P++  Y+ L+D   R  +P   K   
Sbjct: 479 DPLSYQIVILGHCKEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETL 538

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M  +   P  +T+ S+L          ++  V   M E+ ++ ++      L +  D 
Sbjct: 539 EKMLKSSYKPQTSTWHSILNRLLEQGCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDR 598

Query: 240 GYTDEAFEIFEDM--------------------KSSENCQPDSWTFSSM----ITICS-- 273
           G  D+AF+I E +                    ++ E C+   ++  +     I +C+  
Sbjct: 599 GLQDKAFKITELIYKNGFCVKMDEVVQFLCNKRRALEACKLLLFSLKNNENIDIGLCNIV 658

Query: 274 ----CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
               C+  K SEA ++  E+++ G   +L  L  L+       RT++      R+P
Sbjct: 659 ILDLCKLNKASEAFSLCYELVDKGLHQDLICLNDLVAALEAGGRTEEAAFISKRVP 714


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 112/220 (50%), Gaps = 2/220 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ AF +Y+       R +   ++ LI  YG A + +  + +Y ++      P+++
Sbjct: 165 KAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVV 224

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N+L+D   R  +      I+ EM  + + PN  T++ ++ +        + LS+ RE+
Sbjct: 225 TFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLREL 284

Query: 218 KEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             +   +  T +YN ++ +    G  DEA  I  DM+  + C PD +T++ +I     +G
Sbjct: 285 NMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEE-KGCHPDKYTYTILIIGHCMKG 343

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           ++ EA  +F++M+E G  P+   + S I C  KA   ++V
Sbjct: 344 RIPEAVTLFHKMVETGCRPDNITINSFISCVLKAGMPNEV 383



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 6/225 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++++I  Y  AG      +VY +M   G +PN +TYN L++  G+A        +
Sbjct: 151 PNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRM 210

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y ++  +   P+  T+ SL+  Y R    +D + ++ EM +  +Q +V  ++ ++     
Sbjct: 211 YWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCT 270

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
              + EA  +  ++    +  P ++ ++ +I I    GKV EA  +  +M E G  P+ +
Sbjct: 271 QNRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKY 330

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLL 339
             T LI  +    R  + V   +++ E G  PD    + F  C+L
Sbjct: 331 TYTILIIGHCMKGRIPEAVTLFHKMVETGCRPDNITINSFISCVL 375



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 3/236 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM 156
           R GN++ A  L +R        D    + L+         +    V   ++  GV  PN+
Sbjct: 94  RVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNV 153

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++    +A R     ++Y +M  +G  PN  TY  L+  YG+A   E  + +Y +
Sbjct: 154 VTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQ 213

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +        V  +N+L+      G  D+A  I+ +M    + QP+ +TFS +I     + 
Sbjct: 214 LILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEM-GQHHIQPNVYTFSIIIHSLCTQN 272

Query: 277 KVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +EA ++  E+ + A   P  F+   +I    K  + D+    +  + E G  PD
Sbjct: 273 RSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPD 328



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 9/227 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   FS +      AG  D   N+  +    G +     YNNLL+T+    R      ++
Sbjct: 10  DAGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVALF 69

Query: 180 KEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +    +GL SP+  ++  +++   R    +  L +   M E G        N L+     
Sbjct: 70  ESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCR 129

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           V   ++  E+   ++    C P+  T++S+I+     G++ +A +++N+ML++G  PN  
Sbjct: 130 VKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTV 189

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCGC 337
               LI  YGKA   +  VR   +L      PD        D +C C
Sbjct: 190 TYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRC 236


>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
 gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 1/214 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA   E+A GL++  R      D   +STLI  +G  G FD  L+  ++M+   V  +++
Sbjct: 167 RAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALSWLQKMEQDRVSGDLV 226

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+NL++   +     +  +I+  +  +G+SP+   Y S++  +G+A+   +   +  EM
Sbjct: 227 LYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLFREARLLLPEM 286

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G+      Y+TLL+M  + G   EA  +F +M     C  D  T + MI +      
Sbjct: 287 RAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVR-CPLDLTTCNVMIDVYGQLDM 345

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
             EA+ +F  M + G EP +    +L++ YG+A+
Sbjct: 346 AKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAE 379



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+P   +++TL+++YG A  F   ++++  M+   ++ N++TYN ++   G++    
Sbjct: 358 KMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHE 417

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  + +A   +    ++++++  G+++   LY T++
Sbjct: 418 KATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMI 477

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + ITI +  G++ EA  +F +  +AG 
Sbjct: 478 VAYERAGLVAHAKRLLHELK-----RPDNIPRETAITILAGAGRIEEATWVFRQAFDAGE 532

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + + ++  +V+   +++   G  PD      +LN
Sbjct: 533 VKDITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLN 579



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 112/247 (45%), Gaps = 3/247 (1%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++  YN ++  + RAK+      +++EM    L+P+  TY++L+  +G+    +  LS 
Sbjct: 153 PSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALSW 212

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            ++M++  +   + LY+ L+ +   +    +A  IF  +K S    PD   ++SMI +  
Sbjct: 213 LQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRS-GISPDLVAYNSMINVFG 271

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
                 EA  +  EM   G  P+    ++L+  Y +  +  + +   + + E+    D  
Sbjct: 272 KAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLT 331

Query: 334 FCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
            C  +++V  Q    +E  +L   + K   + G V    L     E +   EA  LF  +
Sbjct: 332 TCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLM 391

Query: 393 S-KDVKK 398
             KD+++
Sbjct: 392 QRKDIEQ 398



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 107/238 (44%), Gaps = 17/238 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A  L+ + R+    ID   + T+I  Y  AG       +  E+K    +P+ I
Sbjct: 447 KAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELK----RPDNI 502

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
                +  +  A R  +   ++++  D G   +   +  ++  + R R   + + V+ +M
Sbjct: 503 PRETAITILAGAGRIEEATWVFRQAFDAGEVKDITVFGCMIDLFSRNRKHTNVIEVFDKM 562

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G      +   +L  C  +   ++A  I+++M+  E C         M+++   RG 
Sbjct: 563 RGAGYFPDSNVIALVLNACGKLREFEKADAIYKEMEE-EGCVFSDEVHFQMLSLYGARGD 621

Query: 278 VSEAEAMFNEMLEAGFEPNL------FVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
               +++F E L++  +PN+       V+ S+   Y +A R +D  + +NR+ E GI+
Sbjct: 622 FQMVDSLF-ERLDS--DPNINKKELHLVVASI---YERANRLNDASQIMNRMRERGIS 673



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 110/265 (41%), Gaps = 23/265 (8%)

Query: 47  SLQETQSSNPTKHSQNPQY-PHGKTGSSPKSYIWVNP-KSPRASKLKEKSYDTRAGNVEM 104
           SL+  +++N  +  QN    P+  T S+  S IW    K  RA+ L +K    R+  +E+
Sbjct: 413 SLEHEKATNLVQEMQNRGIEPNAITYSTIIS-IWDKAGKLDRAAMLFQK---LRSSGIEI 468

Query: 105 AFGLYD----------------RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 148
              LY                 R  +E  R D     T I +   AG  +    V+ +  
Sbjct: 469 DQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQAF 528

Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
             G   ++  +  ++D   R ++   V  ++ +M   G  P+ N  A +L A G+ R  E
Sbjct: 529 DAGEVKDITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKLREFE 588

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
              ++Y+EM+E+G   S  ++  +L++    G       +FE + S  N          +
Sbjct: 589 KADAIYKEMEEEGCVFSDEVHFQMLSLYGARGDFQMVDSLFERLDSDPNINKKELHL-VV 647

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGF 293
            +I     ++++A  + N M E G 
Sbjct: 648 ASIYERANRLNDASQIMNRMRERGI 672



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 6/170 (3%)

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           SP+   Y  ++R   RA+  E    ++ EM+++ +      Y+TL+      G  D A  
Sbjct: 152 SPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALS 211

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
             + M+  +    D   +S++I +       S+A ++F+ +  +G  P+L    S+I  +
Sbjct: 212 WLQKME-QDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVF 270

Query: 308 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
           GKA+   +    L  +   G+ PD      LL++  +      GK VE +
Sbjct: 271 GKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVEN-----GKYVEAL 315


>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 112/212 (52%), Gaps = 1/212 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G +++A   ++  + +    +   F+ LI  Y  AG+ +  +++YEEM+ + +  N++
Sbjct: 175 KSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYEEMRRVRMSLNVV 234

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D   +     +   +Y  M ++ + PN   Y +++  + +    ++ +    +M
Sbjct: 235 TYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMKFLAKM 294

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +GM+L +T Y  +++    +G   EA EI EDM+  +   PD   F++M+      G+
Sbjct: 295 LNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGD-LVPDMMIFTTMMNAYFKSGR 353

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           +  A  M+++++E GFEP++  L+++I    K
Sbjct: 354 MKAAVNMYHKLIERGFEPDVVALSTMIDGIAK 385



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 145/320 (45%), Gaps = 16/320 (5%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +ST I ++  +G     L  +  MK   + PN++T+  L+D   +A     V ++
Sbjct: 161 PNVVTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSL 220

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y+EM    +S N  TY +L+  + +    +    +Y  M E  ++ +  +Y T++     
Sbjct: 221 YEEMRRVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQ 280

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G +D A +    M  ++  + D   +  +I+     GK+ EA  +  +M +    P++ 
Sbjct: 281 RGDSDNAMKFLAKML-NQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMM 339

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           + T+++  Y K+ R    V   ++L E G  PD      +++ + +  +        C E
Sbjct: 340 IFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAISYFCTE 399

Query: 359 KSNSKLGYV-VKLLLEEQDIEGDFKKEATELFNSISKDV----KKAYCNCLIDLCVNLNL 413
           K+N  +  V +  L +E+D       E   LF+ IS+      K  Y + +  LC   NL
Sbjct: 400 KANDVMYTVLIDALCKEEDF-----IEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNL 454

Query: 414 LEN---ACKLLELGLTLEVY 430
           ++      K+++ GL L+++
Sbjct: 455 VDAFKLKTKMVQEGLELDLF 474



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G ++ A G+Y R   +  R++PN+  ++T+I  +   G+ D  +    +M   G++ +
Sbjct: 245 KKGEMQRAGGMYLRMLED--RVEPNSLVYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLD 302

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +  Y  ++  +    +  +   I ++M    L P+   + +++ AY ++   +  +++Y 
Sbjct: 303 ITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYH 362

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           ++ E+G +  V   +T++   A  G   EA   F   K+++        ++ +I      
Sbjct: 363 KLIERGFEPDVVALSTMIDGIAKNGQLHEAISYFCTEKAND------VMYTVLIDALCKE 416

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               E E +F+++ EAG  P+ F+ TS I    K     D  +   ++ + G+  D
Sbjct: 417 EDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTKMVQEGLELD 472



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G ++ A  +Y +     +  D  A ST+I      G     ++ +   KA     N +
Sbjct: 350 KSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAISYFCTEKA-----NDV 404

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D + + +   +V+ ++ ++++ GL P+   Y S +    +     D   +  +M
Sbjct: 405 MYTVLIDALCKEEDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTKM 464

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++L +  Y TL+      G   EA ++F++M  S  C PDS  F  +I      G 
Sbjct: 465 VQEGLELDLFAYTTLIYGLTSKGLMVEARQVFDEMLRSGVC-PDSAVFDLLIRAYEKEGN 523

Query: 278 VSEAEAMFNEMLEAGF 293
           ++ A  +  +M   G 
Sbjct: 524 MTTASDLLLDMQTRGL 539



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/318 (18%), Positives = 131/318 (41%), Gaps = 41/318 (12%)

Query: 82  PKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 141
           P     +K   +  ++  G + + F  Y  +R   +    ++F++++      G     +
Sbjct: 19  PDPVTCNKHIHQLINSNCGALSLKFLAYLVSRG--YAPHRSSFNSVVSFVCKLGQVKFAV 76

Query: 142 NVYEEMKAIGVKPNMITYNNLLD--------------------TMGRAKRPWQVK----- 176
           ++   M   G +P++I+YN+L+D                    + G   +P  V      
Sbjct: 77  DIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSACLVLESLRASYGFTCKPDIVSFNTLF 136

Query: 177 ------------TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                        +Y  +     SPN  TY++ +  + ++   +  L  +  MK   +  
Sbjct: 137 NGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDMFCKSGELKLALKSFNCMKRDALFP 196

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  +  L+      G  +    ++E+M+       +  T++++I     +G++  A  M
Sbjct: 197 NVVTFTCLIDGYCKAGDLEVVVSLYEEMRRVRM-SLNVVTYTALIDGFCKKGEMQRAGGM 255

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  MLE   EPN  V T++I  + +   +D+ ++ L ++   G+  D    G +++ +  
Sbjct: 256 YLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCG 315

Query: 345 TPK-EELGKLVECVEKSN 361
             K +E  ++VE +EK +
Sbjct: 316 IGKLKEATEIVEDMEKGD 333


>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 658

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 121/252 (48%), Gaps = 1/252 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA    +A GL+D  R +    D   +STLI  +G  G FD  L   ++M+   V  +++
Sbjct: 147 RAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLV 206

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+NL+D   +     +  +I+  +  + +SP+   Y S++  +G+A+   +   + +EM
Sbjct: 207 LYSNLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEM 266

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++  +Q     Y+TLLA+  D     EA  +F +M  ++ C  D  T + MI +      
Sbjct: 267 RDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAK-CPLDLTTCNIMIDVYGQLHM 325

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             EA+ +F  M + G +PN+    +L++ YG+A    + +     +    +  +      
Sbjct: 326 PKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNT 385

Query: 338 LLNVMTQTPKEE 349
           ++N+  +T + E
Sbjct: 386 MINIYGKTLEHE 397



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
            K  I PN  +++TL+++YG A  F   ++++  M++  V+ N++TYN +++  G+    
Sbjct: 337 RKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEH 396

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   + +EM   G+ PN  TY++++  + +A   +    ++++++  G+++   LY T+
Sbjct: 397 EKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTM 456

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G    A  +  ++K  +N   D     + I I +  G++ EA  +F +  +A 
Sbjct: 457 IVAYERAGLVAHAKRLLHELKRPDNIPRD-----TAIGILARAGRIEEATWVFRQAFDAR 511

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              ++ V   +I  + K ++  +VV    ++  +G  PD      +LN
Sbjct: 512 EVKDISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPDSDVIALVLN 559



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 111/231 (48%), Gaps = 1/231 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L    R+   + D  ++STL+ +Y     F   L+++ EM       ++ T N ++D  G
Sbjct: 262 LLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYG 321

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +   P +   ++  M   G+ PN  +Y +LLR YG A    + + ++R M+ K +Q +V 
Sbjct: 322 QLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVV 381

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YNT++ +       ++A  + ++MK     +P++ T+S++I+I    GK+  A  +F +
Sbjct: 382 TYNTMINIYGKTLEHEKATNLIQEMK-KRGIEPNAITYSTIISIWEKAGKLDRAAILFQK 440

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
           +  +G   +  +  ++I  Y +A       R L+ L      P D   G L
Sbjct: 441 LRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIGIL 491



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 23/271 (8%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +GKT    K+   +     R  +    +Y T      +AG ++ A  L+ + R+   RID
Sbjct: 390 YGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRID 449

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              + T+I  Y  AG       +  E+K    +P+ I  +  +  + RA R  +   +++
Sbjct: 450 EVLYQTMIVAYERAGLVAHAKRLLHELK----RPDNIPRDTAIGILARAGRIEEATWVFR 505

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           +  D     + + +  ++  + + +   + + V+ +M+  G      +   +L     + 
Sbjct: 506 QAFDAREVKDISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPDSDVIALVLNAFGKLR 565

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--- 297
             D+A  ++  M       PD   F  M+++   R      E++F E L++   PN+   
Sbjct: 566 EFDKADALYRQMHEEGCVFPDEVHF-QMLSLYGARKDFVMVESLF-EKLDSN--PNINKK 621

Query: 298 ---FVLTSLIQCYGKAQRTDDVVRALNRLPE 325
               V+ S+   Y +A R +D  R +NR+ +
Sbjct: 622 ELHLVVASI---YERADRLNDASRIMNRMNQ 649


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 14/232 (6%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K R +P+   +++L+  +  AGN      V+ EMK  G++PN+ TY+ ++D + R+ +  
Sbjct: 243 KDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQIT 302

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++ EM D G  PN  T+ +L+R + +A   E  L VY +MK  G       YN L+
Sbjct: 303 RAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLI 362

Query: 234 -AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            + C D    +EA +I   +K  + C  ++ +F+ +    S  G V+ A  MF +M +  
Sbjct: 363 ESHCRD-DNLEEAVKILNSVK--KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLK 419

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 336
             PN      L++ +   + TD V++    + E  I P+          FCG
Sbjct: 420 CRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCG 471



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 12/215 (5%)

Query: 98  RAGNV---EMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           RAGN+   E  FG    A      I PN +  S +I     +G      +V+ EM  +G 
Sbjct: 262 RAGNISEAERVFGEMKMAG-----IQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGC 316

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            PN IT+NNL+    +A R  +V  +Y +M   G  P+  TY  L+ ++ R    E+ + 
Sbjct: 317 DPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVK 376

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +   +K KG  L+ + +N +    + +G  + A  +F  MK  + C+P++ T++ ++ + 
Sbjct: 377 ILNSVK-KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLK-CRPNTVTYNILMRMF 434

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           + +        +  EM E   EPN      LI  +
Sbjct: 435 ADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTF 469



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 36/210 (17%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DPNA  F+ L++++  AG  +  L VY +MK +G  P+ ITYN L+++  R     +   
Sbjct: 317 DPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVK 376

Query: 178 I----------------------------------YKEMTDNGLSPNWNTYASLLRAYGR 203
           I                                  + +M D    PN  TY  L+R +  
Sbjct: 377 ILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFAD 436

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
            +  +  L + +EM E  ++ +   Y  L++    +G+ + A+  F++M   +  +P   
Sbjct: 437 KKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLP 496

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            +  ++      G++ + E +  +M+  GF
Sbjct: 497 VYEMVLQQLRKAGQLKKHEELVEKMVNRGF 526



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 112/246 (45%), Gaps = 21/246 (8%)

Query: 159 YNNLLDTMGRAKR---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           Y  ++D  G+ ++    WQ+  + K  T N   P   T+  L+R Y +A    + +  + 
Sbjct: 149 YMEMIDLAGKVRQFDLAWQLIDLMK--TRNVEIP-VETFTILVRRYVKAGLAAEAVHAFN 205

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M++ G +     ++ +++  +      EA   F+ +K  +  +PD   ++S++      
Sbjct: 206 RMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLK--DRFEPDVVVYTSLVHGWCRA 263

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDD 332
           G +SEAE +F EM  AG +PN++  + +I      G+  R  DV    + + ++G  P+ 
Sbjct: 264 GNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDV---FSEMIDVGCDPNA 320

Query: 333 RFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG----YVVKLLLEEQDIEGDFKKEATEL 388
                L+ V  +  + E  K+++ V     +LG     +    L E     D  +EA ++
Sbjct: 321 ITFNNLMRVHVKAGRTE--KVLQ-VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKI 377

Query: 389 FNSISK 394
            NS+ K
Sbjct: 378 LNSVKK 383



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  N+E A  + +  + +   ++ ++F+ +       G+ +    ++ +MK +  +PN +
Sbjct: 367 RDDNLEEAVKILNSVK-KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTV 425

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+      K    V  + KEM +N + PN NTY  L+  +    +  +  S ++EM
Sbjct: 426 TYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEM 485

Query: 218 -KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            +EK ++ S+ +Y  +L      G   +  E+ E M
Sbjct: 486 IEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKM 521


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 12/273 (4%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGL---YDRARNEKWRIDP 121
            S PK++ + N  S        +SY        R GN+ +A       +R  N   +I+ 
Sbjct: 38  ASPPKAFEFFNWASRNGFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIED 97

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
              +TL++ YG AG F+  + ++  MK+ GV P++IT+N+LL  + +  R     +++ E
Sbjct: 98  RFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDE 157

Query: 182 MTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           M    G++P+  T+  L+R + +    ++    ++EM     +  V  YNTL+      G
Sbjct: 158 MCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAG 217

Query: 241 YTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               A  + + M K  ++  PD  T+++++     + ++ EA  +F EM+  G +PN   
Sbjct: 218 KVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDIT 277

Query: 300 LTSLIQCYGKAQRTDDVVRAL-NRLPELGITPD 331
             +LI+   + Q+ D +   L   +   G  PD
Sbjct: 278 YNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPD 310



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   MA  ++D      + + P+   F+ LI+ +      D     ++EM     +P+
Sbjct: 144 KRGRTNMAHSVFDEMCG-TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPD 202

Query: 156 MITYNNLLDTMGRAKRPW----QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           ++TYN L+D + RA +       VK + K+M D  LSP+  TY +L+R Y   +  ++ L
Sbjct: 203 VVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKD--LSPDVVTYTTLVRGYCMKQEIDEAL 260

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            V+ EM  +G++ +   YNTL+    +V   D+  EI           PD+ T+++++  
Sbjct: 261 VVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNA 320

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
               G   EA  MF +M E   +P+    + LI+     QR D
Sbjct: 321 QCDAGNFDEALKMFKKMKELKVQPDSATYSVLIR--NLCQRGD 361



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 15/195 (7%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TL+     AGNFD  L ++++MK + V+P+  TY+ L+  + +     + + ++
Sbjct: 310 DTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLF 369

Query: 180 KEMT-------DNGLSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
            +++       D+G +P    +N     L   G+    E    V+R++ +KG Q   +  
Sbjct: 370 DKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAE---RVFRQLMKKGTQDPPSYK 426

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
             ++  C + G  +  +++   M   +   PD  T+  +I     +G+   A      ML
Sbjct: 427 TLIIGHCKE-GTFEAGYKLLLFMLRRDYV-PDFETYVLLINGFLQKGEPILAYKTLERML 484

Query: 290 EAGFEPNLFVLTSLI 304
           ++ + P   V  S++
Sbjct: 485 KSSYLPKTSVFHSIL 499


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 118/267 (44%), Gaps = 20/267 (7%)

Query: 82  PKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 141
           P S   SK+    Y   A  VE AF L+   +      D   ++TL+  +   G  +   
Sbjct: 120 PDSSTYSKVI--GYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQAR 177

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           N ++EM+  G  PN++TY  L+    + ++  +   I++ M  NG  PN  TY +L+  +
Sbjct: 178 NWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGH 237

Query: 202 GRARYGEDTLSVYREMKEKGMQL-----------------SVTLYNTLLAMCADVGYTDE 244
            +A   E    +Y  MK   + +                 +V  Y  L+          E
Sbjct: 238 CKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKE 297

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A ++ E M S E C+P+   + ++I      GK+ EA+ +F +ML  G  PN++  +SLI
Sbjct: 298 ARDLLETM-SLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLI 356

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
               K +R D  ++ L ++ E    P+
Sbjct: 357 DKLFKDKRLDLALKVLTKMLENSCAPN 383



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 152/360 (42%), Gaps = 32/360 (8%)

Query: 98  RAGNVEMAFGLYDRARNEK---------WRI------DPNA--FSTLIKLYGTAGNFDGC 140
           +AG  E A  +Y R +N+K         +RI      +PN   +  L+     A      
Sbjct: 239 KAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEA 298

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
            ++ E M   G +PN I Y+ L+D   +  +  + + ++ +M  +G SPN  TY+SL+  
Sbjct: 299 RDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDK 358

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
             + +  +  L V  +M E     +V +Y  ++     VG TDEA+ +   M   + C P
Sbjct: 359 LFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLML-MMEEKGCYP 417

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           +  T+++MI      G+V     +   M   G  PN      LI     A   DD   A 
Sbjct: 418 NVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDD---AH 474

Query: 321 NRLPELGITPDDRFCGCLLNVMTQTPKE---ELGKLVECVEKSNSKLGYVVKLLLEEQDI 377
             L E+  T   +  G    V+     E    LG L E  E  +  +  V KLL+ +  I
Sbjct: 475 KLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVPILPVYKLLI-DNFI 533

Query: 378 EGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRS 437
           +    + A EL   +S     AY N  + L  +L L   ACK+ +     ++Y+D+  R 
Sbjct: 534 KAGRLEMALELHEELS-SFSAAYQNTYVSLIESLTL---ACKVDK---AFKLYSDMTRRG 586



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 6/187 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ +I  +G AG  D CL + + M + G  PN ITY  L++    A        +
Sbjct: 417 PNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKL 476

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM       +   Y  ++  +        +L +  E+ E G    + +Y  L+     
Sbjct: 477 LEEMKQTYWPKHIGMYRKVIEGFSHEFVA--SLGLLAELSEDGSVPILPVYKLLIDNFIK 534

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  + A E+ E++ S      +  T+ S+I   +   KV +A  ++++M   GF P L 
Sbjct: 535 AGRLEMALELHEELSSFSAAYQN--TYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELS 592

Query: 299 VLTSLIQ 305
           +L  LI+
Sbjct: 593 MLVCLIK 599



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 15/191 (7%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  P+ + +N+L+    R+   +    + K+M   G  P +  Y  L+   G     ED 
Sbjct: 6   GCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILI---GGICSTEDL 62

Query: 211 LSV---------YREMKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
            S+         Y EM E G+ L+ V + N    +C  +G  ++A+ +  +M  S+   P
Sbjct: 63  PSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCC-IGKFEKAYNVIREM-MSKGFIP 120

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           DS T+S +I       KV +A  +F EM   G  P+++  T+L+  + K    +      
Sbjct: 121 DSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWF 180

Query: 321 NRLPELGITPD 331
           + + + G  P+
Sbjct: 181 DEMQQDGCAPN 191



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 27/174 (15%)

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSVTLYNTLL-AMCA 237
           M   G  P+   + SL+ AY R+    D    Y+ +K+    G Q    +YN L+  +C+
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSG---DYFYAYKLLKKMVICGYQPGYVVYNILIGGICS 58

Query: 238 D--------VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
                    +G  + A+    +M    N + +   F+  +    C GK  +A  +  EM+
Sbjct: 59  TEDLPSMEVIGLAERAYNEMLEMGVVLN-KVNVCNFTRCL---CCIGKFEKAYNVIREMM 114

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
             GF P+    + +I     A + +   +    +   GITPD        DRFC
Sbjct: 115 SKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFC 168


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 8/264 (3%)

Query: 85  PRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NF 137
           P  ++L  ++Y T      R G  E A  L+D  R E        ++ ++ +YG  G ++
Sbjct: 176 PPGARLDVRAYTTVLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSW 235

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
              + +  +M+A GV+P+  T + ++   GR     +    ++++   G +P   TY +L
Sbjct: 236 PRVVALLADMRAAGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNAL 295

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           L+ +G+A    + L V REM++ G +     YN L    A  G+  EA +  + M   + 
Sbjct: 296 LQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTM-IGKG 354

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             P+++T+++++T     GKV EA A+F+ M + GF P       ++   GK  R   ++
Sbjct: 355 LLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAML 414

Query: 318 RALNRLPELGITPDDRFCGCLLNV 341
             L  +   G TP+      LL V
Sbjct: 415 EMLGEMSRSGCTPNRVTWNTLLAV 438



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 3/204 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++P+ F  ST+I   G  G  D  +  +E++KA G  P ++TYN LL   G+A    +  
Sbjct: 250 VEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEAL 309

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM D G  P+  TY  L  +Y RA + ++       M  KG+  +   YNT++   
Sbjct: 310 RVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAY 369

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            + G  DEA  +F+ MK +    P + T++ ++ +   + + +    M  EM  +G  PN
Sbjct: 370 GNAGKVDEALALFDRMKKN-GFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPN 428

Query: 297 LFVLTSLIQCYGKAQRTDDVVRAL 320
                +L+   GK      V R L
Sbjct: 429 RVTWNTLLAVCGKRGMESYVTRVL 452



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 1/246 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG V+ A  L+DR +   +    N ++ ++ + G    F   L +  EM   G  PN +T
Sbjct: 372 AGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVT 431

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N LL   G+      V  + + M    +    +TY +L+ AYGR     +   +Y EM 
Sbjct: 432 WNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMT 491

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G    +T YN LL + +  G    A  I   MK SE  +P+  ++S ++   +  G  
Sbjct: 492 AAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMK-SEGFKPNDMSYSLLLQCHAKGGNA 550

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
           +  EA+  E+ +    P+  +L +L+    K +R + + RA   +   G  PD      +
Sbjct: 551 AGIEAIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIERAFQEVKARGHKPDLVILNSM 610

Query: 339 LNVMTQ 344
           L++  +
Sbjct: 611 LSIYAK 616



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 11/255 (4%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI 128
           ++G +P    W N       K   +SY TR         + +  ++ K  +  + ++TLI
Sbjct: 422 RSGCTPNRVTW-NTLLAVCGKRGMESYVTR---------VLEGMKSCKVELCRDTYNTLI 471

Query: 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
             YG  G+      +Y+EM A G  P + TYN LL+ + R       ++I  +M   G  
Sbjct: 472 CAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFK 531

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           PN  +Y+ LL+ + +        ++ +E+ +  +  S  +  TL+         +     
Sbjct: 532 PNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIERA 591

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           F+++K+  + +PD    +SM++I +  G  S+A  MF  + + G  P+L    SL+  Y 
Sbjct: 592 FQEVKARGH-KPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYA 650

Query: 309 KAQRTDDVVRALNRL 323
           K+    +  + LNRL
Sbjct: 651 KSNEPWEAEKILNRL 665



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 5/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN   A  +     +   + D   ++ L   Y  AG +       + M   G+ PN  
Sbjct: 301 KAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTF 360

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++   G A +  +   ++  M  NG  P  NTY  +L   G+       L +  EM
Sbjct: 361 TYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEM 420

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--ENCQPDSWTFSSMITICSCR 275
              G   +   +NTLLA+C   G       + E MKS   E C+    T++++I      
Sbjct: 421 SRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRD---TYNTLICAYGRC 477

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           G  + A  M++EM  AGF P L    +L+    +          ++++   G  P+D
Sbjct: 478 GSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPND 534



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 43/254 (16%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+   AF +YD      +      ++ L+ +    G++    ++  +MK+ G KPN +
Sbjct: 476 RCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDM 535

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+ LL    +      ++ I KE+    + P+W    +L+ A  + R  E     ++E+
Sbjct: 536 SYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIERAFQEV 595

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE------------------DMKSSEN-- 257
           K +G +  + + N++L++ A  G   +A E+FE                  DM +  N  
Sbjct: 596 KARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEP 655

Query: 258 -----------------------CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                                   +PD  +++++I      G + EA+ + +EM+  G  
Sbjct: 656 WEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVA 715

Query: 295 PNLFVLTSLIQCYG 308
           P +    +L+  Y 
Sbjct: 716 PCVITYHTLVGGYA 729



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/241 (19%), Positives = 102/241 (42%), Gaps = 30/241 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   +E AF    +AR  K   D    ++++ +Y   G +   + ++E ++ +G+ P++I
Sbjct: 584 RLEGIERAFQEV-KARGHK--PDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLI 640

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+D   ++  PW+ + I   +                           +    ++ 
Sbjct: 641 TYNSLMDMYAKSNEPWEAEKILNRLR--------------------------SSQSQQQQ 674

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +++ ++  V  YNT++      G   EA  +  +M  ++   P   T+ +++   + R  
Sbjct: 675 QQQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEM-IADGVAPCVITYHTLVGGYASREM 733

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            +EA  +   M++   +P       ++  Y +A+R +D    L  + E     D++  G 
Sbjct: 734 FAEAREVVGYMIQRKLKPMELTYRRVVDSYCRAKRYEDARDFLAVVAEADTNSDEKLLGA 793

Query: 338 L 338
           L
Sbjct: 794 L 794


>gi|410110109|gb|AFV61134.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           diamantinensis]
          Length = 363

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 119 KMGIEPNVVSYNTLLRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 178

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 179 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMI 238

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 239 VAYERAGLIAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 293

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 294 VKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLN 340



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 108/214 (50%), Gaps = 3/214 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  ++STL+ +Y     F   L V+ EM+ I    ++ T N ++D  G+     +   +
Sbjct: 54  PNTTSYSTLLTMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 113

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M   G+ PN  +Y +LLR YG A    +++ ++R M+ K ++ +V  YN+++ +   
Sbjct: 114 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGK 173

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++   G E +  
Sbjct: 174 TLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQI 232

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  ++I  Y +A       R L+ L      P D
Sbjct: 233 LFQTMIVAYERAGLIAHAKRLLHELKRPDNIPRD 266



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 36/231 (15%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           ++   ++++  +K  G  P+++ YN +++  G+AK   + +++  EM   G+ PN  +Y+
Sbjct: 1   DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 60

Query: 196 SLLRAYGRARYGEDTLSVYREMKE-----------------------------------K 220
           +LL  Y   +   + L V+ EM+E                                    
Sbjct: 61  TLLTMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 120

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++ +V  YNTLL +  D     E+  +F  M+  +N + +  T++SM+ I     +  +
Sbjct: 121 GIEPNVVSYNTLLRVYGDAELFGESIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEK 179

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 180 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEID 230



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG +  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 243 RAGLIAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 298

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+ +  +    VY EM
Sbjct: 299 VFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 358

Query: 218 KEKG 221
           +E G
Sbjct: 359 QEVG 362


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 1/235 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  L+D   N++ R D   ++TLI      G+ D   +++++M +  + PN +TY
Sbjct: 100 GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 159

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L+D+     +         EM + G+ PN  TY S+++ Y R+          ++M  
Sbjct: 160 SILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMV 219

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             +   +  YNTL+          +AF++  +M   E  QPD  T++ +I   S  G V 
Sbjct: 220 NKVSPDLITYNTLIHGYIKEDKMHDAFKLL-NMMEKEKVQPDVVTYNMLINGFSVHGNVQ 278

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           EA  +F +M   G EP+ +   S+I  +  A  + +  +  + + + G  PDD+F
Sbjct: 279 EAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 333



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 105/212 (49%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +I  +  AG     L V +EM   G  P+++TYN LL+ + + +R    + + 
Sbjct: 15  DGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLL 74

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM + G+ P+  T+ +L+  Y      +  L ++  M  + ++  +  YNTL+      
Sbjct: 75  NEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 134

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D+A ++++DM S E   P+  T+S +I     +G+V +A    +EM+  G  PN+  
Sbjct: 135 GDLDKANDLWDDMHSRE-IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT 193

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             S+I+ Y ++       + L ++    ++PD
Sbjct: 194 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 225



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+++ A  L+D   + +   +   +S LI  +   G  +      +EM   G+ PN++
Sbjct: 133 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 192

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+++    R+    + +   ++M  N +SP+  TY +L+  Y +     D   +   M
Sbjct: 193 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMM 252

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +++ +Q  V  YN L+   +  G   EA  IFE M  ++  +PD +T+ SMI      G 
Sbjct: 253 EKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM-CAKGIEPDRYTYMSMINGHVTAGN 311

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             EA  + +EML+ GF P+
Sbjct: 312 SKEAFQLHDEMLQRGFAPD 330



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 1/186 (0%)

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           EM+  G+ P+ + Y  ++    RA        +  EM   G  P+  TY +LL    + R
Sbjct: 6   EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 65

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
              D   +  EM+E+G+   +  + TL+      G  D+A ++F+ M  ++  +PD  T+
Sbjct: 66  RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM-LNQRLRPDIVTY 124

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           +++I     +G + +A  ++++M      PN    + LI  + +  + +D    L+ +  
Sbjct: 125 NTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN 184

Query: 326 LGITPD 331
            GI P+
Sbjct: 185 KGILPN 190



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 238
           +EM   GL P+   Y  ++  + RA    D L V  EM   G    V  YNTLL  +C +
Sbjct: 5   REMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKE 64

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               D A  +  +M+      PD  TF+++I      GK+ +A  +F+ ML     P++ 
Sbjct: 65  RRLLD-AEGLLNEMR-ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIV 122

Query: 299 VLTSLI 304
              +LI
Sbjct: 123 TYNTLI 128


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 116 KWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAK 170
           + +I PN F+   +I      G  +   +V E+MK  G  PN+++YN L+D    +G   
Sbjct: 216 RRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNG 275

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
           + ++   + KEM +N +SPN  T+  L+  + +      +L V++EM ++ +  +V  YN
Sbjct: 276 KMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYN 335

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           +L+    + G  +EA  + + M S+   QP+  T+ S+I      G + EA  MF+ +  
Sbjct: 336 SLINGLCNGGKINEAIGMRDKMVSA-GVQPNLITYHSLINGFCKNGMMKEALDMFDSVKG 394

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            G  P   +   LI  Y K  + DD       +   GI PD     CL+
Sbjct: 395 QGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 104/214 (48%), Gaps = 4/214 (1%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   F+ LI  +    N  G L V++EM    V PN+ITYN+L++ +    +  +  
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAI 351

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  +M   G+ PN  TY SL+  + +    ++ L ++  +K +G + +  +YN L+   
Sbjct: 352 GMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAY 411

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             +G  D+ F + E+M+  E   PD  T++ +I      G +  A+ +F+++   G  P+
Sbjct: 412 CKLGKIDDGFALKEEME-REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PD 469

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           L     L++ Y     +      L  + ++G+ P
Sbjct: 470 LVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKP 503



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  ++D  + +  R     ++ LI  Y   G  D    + EEM+  G+ P++ 
Sbjct: 378 KNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVG 437

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + R       K ++ ++T+ GL P+  T+  L+  Y           + +EM
Sbjct: 438 TYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEM 496

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G++     YN ++      G    A  +   M+     + +  +++ ++   S +GK
Sbjct: 497 SKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGK 556

Query: 278 VSEAEAMFNEMLEAGFEPN 296
           + +A  + NEMLE G  PN
Sbjct: 557 LEDANMLLNEMLEKGLVPN 575



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 130/335 (38%), Gaps = 72/335 (21%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
           L+  Y     F+     ++     G K + ++   L+  + +  R   V+ +YKEM    
Sbjct: 159 LVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRK 218

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-----Y 241
           + PN  T+  ++ A  +         V  +MK  G   +V  YNTL+     +G     Y
Sbjct: 219 IQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMY 278

Query: 242 TDEA---------------------------------FEIFEDMKSSENCQPDSWTFSSM 268
             +A                                  ++F++M   ++  P+  T++S+
Sbjct: 279 KADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEM-LDQDVIPNVITYNSL 337

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I      GK++EA  M ++M+ AG +PNL    SLI  + K     + +   + +   G 
Sbjct: 338 INGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGT 397

Query: 329 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 388
            P  R    L++   +     LGK+ +         G+ +K   EE + EG         
Sbjct: 398 RPTTRMYNMLIDAYCK-----LGKIDD---------GFALK---EEMEREG--------- 431

Query: 389 FNSISKDVKKAYCNCLI-DLCVNLNLLENACKLLE 422
              I  DV     NCLI  LC N N +E A KL +
Sbjct: 432 ---IVPDV--GTYNCLIAGLCRNGN-IEAAKKLFD 460



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R GN+E A  L+D+  N K   D   F  L++ Y + G       + +EM  +G+KP  +
Sbjct: 448 RNGNIEAAKKLFDQLTN-KGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHL 506

Query: 158 TYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           TYN ++      G  K    ++T  ++  +  L  N  +Y  LL+ Y +    ED   + 
Sbjct: 507 TYNIMMKGYCKEGNLKAATNMRTQMEK--ERRLRMNVASYNVLLQGYSQKGKLEDANMLL 564

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYT 242
            EM EKG+  +   Y  +     D G+ 
Sbjct: 565 NEMLEKGLVPNRITYEIVKEEMVDKGFV 592


>gi|255557995|ref|XP_002520026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540790|gb|EEF42350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1040

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  + A  +  ++  E   +D  A++  IK    AG      ++YE M ++GV P++ TY
Sbjct: 701 GKHQEAENIVRKSIRENMDLDTVAYNIFIKAMLEAGRLHFAASIYEHMLSLGVTPSIQTY 760

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++   GR ++  +   I+     +G+S +   Y +++  YG+A    +   ++ +M+E
Sbjct: 761 NTMISVYGRGEKLDKAVEIFNTACSSGVSLDEKAYMNMVSYYGKAGKRNEASLLFTKMQE 820

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G++     YN ++ + A  G   EA E+F  M+  +   PDS+T+ S++   +   K S
Sbjct: 821 EGIKPGKVSYNIMIKVFAIAGLYHEAKELFHAMQ-RDGWPPDSFTYLSLVQAYTESLKYS 879

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EAE   + M + G  P+      L+  Y KA    +  R   +L   G++PD
Sbjct: 880 EAEETIDGMPKKGVLPSCSHFNHLLSAYAKAGLMVEAERVYKKLLTSGLSPD 931



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 12/305 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A  T++  Y   G      + Y  ++  G+  ++  YN +L ++ +     +V  ++
Sbjct: 221 DEVACGTMLCSYARWGRHKAMFSFYSAIRERGITLSVSVYNFMLSSLQKKSLHGRVIELW 280

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M D  ++PN  TY  ++ +  +    E+   V+ EMK  G       Y+ L+ +    
Sbjct: 281 RQMVDKAVAPNTFTYTVVISSLVKEGLHEEAFKVFNEMKNTGHVPEEVTYSLLITVNTKK 340

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  DEA  ++ED+  S    P ++T +S++T+    G  S+A ++F EM       +  +
Sbjct: 341 GNWDEAGRLYEDL-ISHGLVPSNFTCASLLTMYYKNGDFSKALSLFMEMQSKKIAADEVI 399

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVE 358
              LI+ YGK    DD  +      +LG+  D++    +  V   +   E    ++E ++
Sbjct: 400 YGLLIRIYGKLGLYDDAQKTFEETEQLGLLSDEKTYLAMAQVHLNSGNSEKALSVIEVMK 459

Query: 359 KSN---SKLGYVVKLLLEEQDIEGDFK-KEATELFNSISKD--VKKAYCNCLIDLCVNLN 412
             N   S+  Y+V  LL+   ++ D    EAT  + ++SK        CN +++L + L+
Sbjct: 460 SRNIWLSRFAYIV--LLQCYVMKEDLDCAEAT--YQALSKTGLPDAGSCNDMLNLYLRLD 515

Query: 413 LLENA 417
           L E A
Sbjct: 516 LTEKA 520



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 103/234 (44%), Gaps = 1/234 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G  E A+ LY    +    +     S ++K     G      N+  +     +  + 
Sbjct: 663 AKCGKSEDAYSLYREVTDRGLNLGAVGVSIIVKALSNRGKHQEAENIVRKSIRENMDLDT 722

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + YN  +  M  A R     +IY+ M   G++P+  TY +++  YGR    +  + ++  
Sbjct: 723 VAYNIFIKAMLEAGRLHFAASIYEHMLSLGVTPSIQTYNTMISVYGRGEKLDKAVEIFNT 782

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
               G+ L    Y  +++     G  +EA  +F  M+  E  +P   +++ MI + +  G
Sbjct: 783 ACSSGVSLDEKAYMNMVSYYGKAGKRNEASLLFTKMQ-EEGIKPGKVSYNIMIKVFAIAG 841

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
              EA+ +F+ M   G+ P+ F   SL+Q Y ++ +  +    ++ +P+ G+ P
Sbjct: 842 LYHEAKELFHAMQRDGWPPDSFTYLSLVQAYTESLKYSEAEETIDGMPKKGVLP 895



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            ++ +++ YG  G        + EM   G +P+ +    +L +  R  R   + + Y  +
Sbjct: 189 VYTIVLRTYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCSYARWGRHKAMFSFYSAI 248

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            + G++ + + Y  +L +  +       + ++R+M +K +  +   Y  +++     G  
Sbjct: 249 RERGITLSVSVYNFMLSSLQKKSLHGRVIELWRQMVDKAVAPNTFTYTVVISSLVKEGLH 308

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           +EAF++F +MK++ +  P+  T+S +IT+ + +G   EA  ++ +++  G  P+ F   S
Sbjct: 309 EEAFKVFNEMKNTGHV-PEEVTYSLLITVNTKKGNWDEAGRLYEDLISHGLVPSNFTCAS 367

Query: 303 LIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNV 341
           L+  Y K     D  +AL+   E+    I  D+   G L+ +
Sbjct: 368 LLTMYYK---NGDFSKALSLFMEMQSKKIAADEVIYGLLIRI 406



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 1/188 (0%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++I Y  +L T G+  +    +  + EM + G  P+     ++L +Y R    +   S 
Sbjct: 185 PSVIVYTIVLRTYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCSYARWGRHKAMFSF 244

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y  ++E+G+ LSV++YN +L+            E++  M   +   P+++T++ +I+   
Sbjct: 245 YSAIRERGITLSVSVYNFMLSSLQKKSLHGRVIELWRQM-VDKAVAPNTFTYTVVISSLV 303

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G   EA  +FNEM   G  P     + LI    K    D+  R    L   G+ P + 
Sbjct: 304 KEGLHEEAFKVFNEMKNTGHVPEEVTYSLLITVNTKKGNWDEAGRLYEDLISHGLVPSNF 363

Query: 334 FCGCLLNV 341
            C  LL +
Sbjct: 364 TCASLLTM 371



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 113/230 (49%), Gaps = 7/230 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   ++ A  +++ A +    +D  A+  ++  YG AG  +    ++ +M+  G+KP  +
Sbjct: 769 RGEKLDKAVEIFNTACSSGVSLDEKAYMNMVSYYGKAGKRNEASLLFTKMQEEGIKPGKV 828

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGEDTLSVYRE 216
           +YN ++     A    + K ++  M  +G  P+  TY SL++AY  + +Y E   ++   
Sbjct: 829 SYNIMIKVFAIAGLYHEAKELFHAMQRDGWPPDSFTYLSLVQAYTESLKYSEAEETI-DG 887

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M +KG+  S + +N LL+  A  G   EA  +++ + +S    PD   + +M+      G
Sbjct: 888 MPKKGVLPSCSHFNHLLSAYAKAGLMVEAERVYKKLLTS-GLSPDLACYRAMLRGYLDYG 946

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRL 323
           +V +    F E ++   E + F++++ +  Y   GK    + ++ ++N L
Sbjct: 947 QVEKGINFF-EQIKKYAESDRFIMSAAVHLYKFAGKEPMAEVLLGSMNNL 995



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 4/217 (1%)

Query: 94   SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
            SY  +AG    A  L+ + + E  +    +++ +IK++  AG +     ++  M+  G  
Sbjct: 800  SYYGKAGKRNEASLLFTKMQEEGIKPGKVSYNIMIKVFAIAGLYHEAKELFHAMQRDGWP 859

Query: 154  PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
            P+  TY +L+     + +  + +     M   G+ P+ + +  LL AY +A    +   V
Sbjct: 860  PDSFTYLSLVQAYTESLKYSEAEETIDGMPKKGVLPSCSHFNHLLSAYAKAGLMVEAERV 919

Query: 214  YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            Y+++   G+   +  Y  +L    D G  ++    FE +K  +  + D +  S+ + +  
Sbjct: 920  YKKLLTSGLSPDLACYRAMLRGYLDYGQVEKGINFFEQIK--KYAESDRFIMSAAVHLYK 977

Query: 274  CRGKVSEAEAMFNEM--LEAGFEPNLFVLTSLIQCYG 308
              GK   AE +   M  L+  F  NL V + ++  Y 
Sbjct: 978  FAGKEPMAEVLLGSMNNLKISFLHNLQVGSKIVSKYA 1014


>gi|255661216|gb|ACU25777.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 426

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN ++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 297 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGE 351

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I  + K ++  +V     ++  LG  PD      +LN
Sbjct: 352 VKDITVFERMIDLFSKYRKYTNVGEVFEKMRGLGYFPDSNVIALVLN 398



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 121/267 (45%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G+ P+++ Y
Sbjct: 23  GLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N++++  G+AK   + +++  EM   G+ P+  +Y+++L  Y       + LSV+REM+E
Sbjct: 83  NSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVENHKFLEALSVFREMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 INCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T+++M+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNAITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVEID 288



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G++P+   Y S++  +G+A+  ++  S+  EM+  G+      Y+T+L M  + 
Sbjct: 68  SRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+   NC  D  T + MI +        EA+ +F  M + G EPN+  
Sbjct: 128 HKFLEALSVFREMREI-NCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +D LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   ++SMI +        EA ++ +EM  AG  P+    +++
Sbjct: 62  KAISIFSRLKRS-GITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTI 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y +  +  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQ 161



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PNA  +ST+I ++G  G  D    +++++++ GV+ + + Y  ++    RA      K
Sbjct: 250 IEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAK 309

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L   GR    E+   V+R+  + G    +T++  ++ + 
Sbjct: 310 RLLHELKRPDNIPR-DTAIHILAGAGRI---EEATWVFRQAIDAGEVKDITVFERMIDLF 365

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+FE M+      PDS   + +  + +  GK+ E   A  ++ EM + G
Sbjct: 366 SKYRKYTNVGEVFEKMRGL-GYFPDS---NVIALVLNAYGKLHEFDKANEVYMEMQDEG 420



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 10/160 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +          ++ +  Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
               T I +   AG  +    V+ +    G   ++  +  ++D   + ++   V  ++++
Sbjct: 321 IPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYRKYTNVGEVFEK 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           M   G  P+ N  A +L AYG+    +    VY EM+++G
Sbjct: 381 MRGLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEMQDEG 420



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 4/179 (2%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E+ +      Y+TL+      G  D+A    + M+  +    D   +S++I +      
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQ-DRVPGDLVLYSNLIELSRKLCD 59

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            S+A ++F+ +  +G  P+L    S+I  +GKA+   +    ++ +   G+ PD      
Sbjct: 60  YSKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYST 119

Query: 338 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
           +L +  +  K  E L    E  E  N  L      ++ +   + D  KEA  LF S+ K
Sbjct: 120 ILTMYVENHKFLEALSVFREMRE-INCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRK 177


>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
 gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 116/234 (49%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+   A  L+    N   R D +A  ++++   +AG     +++  ++   GV  + +
Sbjct: 395 KLGHASEAHRLFCNMWNCHERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTV 454

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN +   +G+ K+   +  +Y++M  +G  P+  TY  L+ ++GRA   ++ + ++ E+
Sbjct: 455 MYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEEL 514

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++   +     YN+L+      G+ DEA   F++M   +   PD  T+S++I       K
Sbjct: 515 EDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEM-CEKGLNPDVVTYSTLIECFGKTDK 573

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V  A  +F+EML  G  PN+     L+ C  ++ RT + V    +L + G+ PD
Sbjct: 574 VEMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLIPD 627



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 1/214 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG    A  L  +   +   +D   ++T+    G         ++YE+MK  G  P+  T
Sbjct: 431 AGKTTEAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFT 490

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+ + GRA +  +   I++E+ D+   P+  +Y SL+   G+  + ++    ++EM 
Sbjct: 491 YNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMC 550

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           EKG+   V  Y+TL+         + A  +F++M  +E C P+  T++ ++      G+ 
Sbjct: 551 EKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEM-LAEGCYPNIVTYNILLDCLERSGRT 609

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           +EA  ++ ++ + G  P+    + L +    + R
Sbjct: 610 AEAVDLYAKLKQQGLIPDSITYSVLARLQSGSHR 643



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 18/259 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+ N E  F +Y   + +   +D  AF+ L+         D    V+E+MK    +P+  
Sbjct: 223 RSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEY 282

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++   G+  +P +   +++EM + G SPN   Y ++++A   AR  +  + ++ +M
Sbjct: 283 TYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKM 342

Query: 218 KEKGMQLSVTLYNTLLAMCA---DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EK  + S   Y+ +L + A    +   DE  E+ +   S          ++ ++     
Sbjct: 343 VEKECRPSEFTYSVILHLLATERKLHKLDEVVEVSKKYMSRS-------IYAYLVRTLKK 395

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G  SEA  +F  M       +     S+++C   A +T + +  L ++ E G++ D   
Sbjct: 396 LGHASEAHRLFCNMWNCHERGDRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVD--- 452

Query: 335 CGCLLNVMTQTPKEELGKL 353
                 VM  T    LGKL
Sbjct: 453 -----TVMYNTVFSALGKL 466



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 69/135 (51%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V+ A  +++   +  ++ D  ++++LI   G  G+ D     ++EM   G+ P+++
Sbjct: 500 RAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVV 559

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G+  +      ++ EM   G  PN  TY  LL    R+    + + +Y ++
Sbjct: 560 TYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVDLYAKL 619

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y+ L
Sbjct: 620 KQQGLIPDSITYSVL 634


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +R G +  A   +++ +      D   ++ LI  Y    +  G L +  EM   G   ++
Sbjct: 375 SRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDV 434

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN LL+ + R K       ++KEM + G+ P++ T  +L+  Y +       LS++  
Sbjct: 435 VTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFET 494

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  + ++  V  YNTL+     VG  ++A E++ DM S E   P   +FS +I      G
Sbjct: 495 MTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISRE-IFPSYISFSILINGFCSLG 553

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            VSEA  +++EM E G +P L    ++I+ Y +A         LN +   G+ PD
Sbjct: 554 LVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPD 608



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 3/213 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V  AFGL D    +  +     ++ LI      G+++    V +EM  +G+ PN  
Sbjct: 271 RRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAA 330

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N +L    R +  W+ + ++ EM   G+ P+  +++S++  + R       L+ + +M
Sbjct: 331 TFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKM 390

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G+     +Y  L+           A ++  +M     C  D  T+++++    CRGK
Sbjct: 391 KGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEM-VERGCVMDVVTYNTLLN-GLCRGK 448

Query: 278 -VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
            + +A+ +F EM+E G  P+ + LT+LI  Y K
Sbjct: 449 MLDDADELFKEMVERGVFPDFYTLTTLIHGYCK 481



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 1/221 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D    +TLI  Y   GN    L+++E M    +KP+++TYN L+D   +     + K ++
Sbjct: 468 DFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELW 527

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M    + P++ +++ L+  +       +   ++ EMKEKG++ ++   NT++      
Sbjct: 528 YDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRA 587

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A +    M  SE   PD  T++++I           A  + N M E G  PNL  
Sbjct: 588 GNLSKANDFLNTM-ISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVT 646

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +++  + +  R  +    L+++ + GI PD      L+N
Sbjct: 647 YNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLIN 687



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 3/233 (1%)

Query: 109 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           +   R   + +  NA + L+      G  D    VYE+    G   N+ T N +++ + +
Sbjct: 177 FQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCK 236

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
             +   V     EM + G+  +  TY +L+ AY R     +   +   M  KG++  +  
Sbjct: 237 DGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFT 296

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNE 287
           YN L+      G  + A  + ++M     C P++ TF+ M+ + SCR + V EAE +FNE
Sbjct: 297 YNALINGLCKEGSYERAKRVLDEMLGVGLC-PNAATFNPML-VESCRKEDVWEAERVFNE 354

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           ML+ G  P+L   +S++  + +       +    ++  +G+ PD      L+N
Sbjct: 355 MLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILIN 407



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 15/241 (6%)

Query: 67  HG--KTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGL-YDRARNEKW 117
           HG  K G+  K+       + R+ K    +Y+T      + G +E A  L YD    E  
Sbjct: 477 HGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISRE-- 534

Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
            I P+  +FS LI  + + G       +++EMK  G+KP ++T N ++    RA    + 
Sbjct: 535 -IFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKA 593

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
                 M   G+ P+  TY +L+ ++ +    +    +   M+E+G+  ++  YN +L  
Sbjct: 594 NDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGG 653

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            +  G   EA  +   M   +   PD  T++S+I     +  + EA  + +EML+ GF P
Sbjct: 654 FSRHGRMQEAEMVLHKM-IDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVP 712

Query: 296 N 296
           +
Sbjct: 713 D 713



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 34/173 (19%)

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            +  L+R Y +AR   +    ++ ++++G  +S+   N LL     VG+ D A++++ED 
Sbjct: 156 VFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDF 215

Query: 253 KSSEN--------------CQ--------------------PDSWTFSSMITICSCRGKV 278
             S N              C+                     D  T+++++     RG V
Sbjct: 216 VKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLV 275

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           SEA  + + M   G +P LF   +LI    K    +   R L+ +  +G+ P+
Sbjct: 276 SEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPN 328


>gi|302798857|ref|XP_002981188.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
 gi|300151242|gb|EFJ17889.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
          Length = 796

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 2/230 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++A G +   R +KW +    +FS L+  YG   +F     V  ++KA       + YN 
Sbjct: 116 DVANGFFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLSDLKADKCPMTTVAYNT 175

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+   G+A +  +    YKEM D+   P+  T+ +L+  Y  A   E  L VY EM++ G
Sbjct: 176 LIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIG 235

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             L    Y  ++     VG  D A  +FE MK +E  QP++  +S++I      G++   
Sbjct: 236 CSLDRVGYEVVVPHAGKVGRLDLACMLFERMK-AEGHQPNAVAYSALIAGQLKSGRLEIG 294

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              F EM      P L    SLI+ Y K+ R +  ++    +      P+
Sbjct: 295 TKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPN 344



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 113/270 (41%), Gaps = 36/270 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV----- 152
           +A  ++ A+G Y   ++ +   D   F+TL+ LY  AG  +  L VY+EM+ IG      
Sbjct: 182 KAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDRV 241

Query: 153 ------------------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
                                         +PN + Y+ L+    ++ R       ++EM
Sbjct: 242 GYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEEM 301

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
               + P   T+ASL+ AY ++   E  L  +++M+    + ++ +Y  L+   A  G  
Sbjct: 302 RSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCIYAALVDAHAKAGML 361

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A E +E M+      P    F+ +I   +  GK   A  ++ EM   G  P+ F    
Sbjct: 362 DAALEFYERMRGVGLWLP-PLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRPSHFTCRI 420

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           ++    K  + DDV R L  + E+G+   D
Sbjct: 421 VVGAVAKGGKYDDVERILFEMQEMGLNVAD 450



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/476 (19%), Positives = 192/476 (40%), Gaps = 46/476 (9%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +++A  L++R + E  + +  A+S LI     +G  +     +EEM+++ ++P + 
Sbjct: 252 KVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEEMRSLEIRPLLG 311

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L++   ++ R       +K+M      PN   YA+L+ A+ +A   +  L  Y  M
Sbjct: 312 TFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCIYAALVDAHAKAGMLDAALEFYERM 371

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G+ L   ++  L+   A  G  + A  ++ +M+     +P  +T   ++   +  GK
Sbjct: 372 RGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGV-GLRPSHFTCRIVVGAVAKGGK 430

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             + E +  EM E G      V  S+++     +R  D      ++   G TP    C  
Sbjct: 431 YDDVERILFEMQEMGLNVADAVNDSIVKLVDD-KRISDAWELFLKVTGHGFTPHVSLCRE 489

Query: 338 LLN-VMTQTPKEELGKLVECVEKSNSKLG---YVVKL-------LLEEQDIEGDFKKEA- 385
           +L+  ++    E   +++  +++  S +    Y + L        LE +++   F +E  
Sbjct: 490 ILHGFLSCGDMEHARQMLSFMQRPGSAVDLRTYCMLLEFFLRGSRLEHEEVVMSFMRETK 549

Query: 386 ------------------------------TELFNSISKDVKKAYCNCLIDLCVNLNLLE 415
                                         +EL   +    ++   N L++  V +    
Sbjct: 550 HPAHSFLCGLMGSSKHRNGQSLADYIKSFYSELEAEVDFKTRRYLTNVLLNYLVVMGQER 609

Query: 416 NACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 474
            A    ++   + +Y + I  +    W L ++S+S+GAAL  +   +    + +      
Sbjct: 610 KARSFWKVVYQIHMYPNSIVLQGDLTWCLKVRSMSIGAALIGVLCTLEKFRERILKRRFV 669

Query: 475 PPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 530
           P  + I TG  K       +    E+ +K L++PF    + +G F    +    W 
Sbjct: 670 PQRIKILTG-SKADSDAIAVRQAIEAMMKPLDSPFIFQDEDLGSFWCRGSFFVKWF 724


>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           macropoda]
          Length = 427

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN++    G+     
Sbjct: 184 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEHE 243

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 244 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMI 303

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 304 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 358

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 359 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 405



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 1/206 (0%)

Query: 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
           +GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++ 
Sbjct: 1   YGLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIEL 60

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
             +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  +
Sbjct: 61  SRKLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPN 120

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
              Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F
Sbjct: 121 TXSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLF 179

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQ 311
             M + G EPN+    +L++ YG A+
Sbjct: 180 WGMRKMGIEPNVVSYNTLLRVYGDAE 205



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMKA GV PN  +Y+ LL 
Sbjct: 70  AISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLT 129

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 130 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 189

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN++  +       ++A  + 
Sbjct: 190 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEHEKANNLI 249

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 250 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYER 308

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 309 AGLVAHAKRLLHELKRPDNIPRD 331



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 308 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 363

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 364 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 423

Query: 218 KEKG 221
           +E G
Sbjct: 424 QEVG 427


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 11/242 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R GN E A  L+D   +++ R D  A+++LI      G+      ++++M A  + PN +
Sbjct: 414 RDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHV 473

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+D+     +  +      EM   G  PN  TY S+++ Y R+   +      ++M
Sbjct: 474 TYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKM 533

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDE-----AFEIFEDMKSSENCQPDSWTFSSMITIC 272
            +  +   +  +NTL+      GY  E     AF +F  M+  E  QPD+ T++ +I   
Sbjct: 534 MQDNILPDLITFNTLIH-----GYIKEENMHGAFNVFNIMEK-EMVQPDAVTYNMIINGF 587

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           S +G + EA  +F +M  +G EP+ +   SLI  +  A  + +  +  + +   G  PDD
Sbjct: 588 SEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPDD 647

Query: 333 RF 334
           +F
Sbjct: 648 KF 649



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 153/343 (44%), Gaps = 14/343 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG   +A   Y    +    ++    + ++  Y  +  FD    V  EM+   V P+++
Sbjct: 134 RAGWPHLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVV 193

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+D   RA        +   M + GL P   T+ S+L+   + R  +    V+R M
Sbjct: 194 THNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAM 253

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +  +   V  +N L+     VG  +EA + +++M+      PD  +FS +I + S RGK
Sbjct: 254 DQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQ-QRGVTPDVVSFSCLIGLFSTRGK 312

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A A   EM   G  P+  + T +I  + +A    + +R  + +  LG  PD      
Sbjct: 313 MDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNT 372

Query: 338 LLNVMTQTPK----EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
           LLN + +  +    EEL  L E  E+  +        L+     +G+F+K A +LF+++ 
Sbjct: 373 LLNGLCKQHRLLDAEEL--LNEMKERGVTPDLCTFTTLIHGYCRDGNFEK-ALQLFDTLL 429

Query: 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436
               +       D+    +L++  C+  +L    E++ D+ +R
Sbjct: 430 HQRLRP------DVVAYNSLIDGMCRKGDLAKANELWDDMHAR 466



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 36/269 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC----------------- 140
           R G VE A   Y   +      D  +FS LI L+ T G  D                   
Sbjct: 274 RVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGV 333

Query: 141 ------------------LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
                             L V +EM  +G  P+++TYN LL+ + +  R    + +  EM
Sbjct: 334 IYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEM 393

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            + G++P+  T+ +L+  Y R    E  L ++  +  + ++  V  YN+L+      G  
Sbjct: 394 KERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDL 453

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +A E+++DM + E   P+  T+S +I     +G+V EA    +EM+  G  PN+    S
Sbjct: 454 AKANELWDDMHARE-IFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNS 512

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +I+ Y ++       + L ++ +  I PD
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMMQDNILPD 541



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 95/208 (45%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+TLI  Y   GNF+  L +++ +    ++P+++ YN+L+D M R     +   ++ +M 
Sbjct: 405 FTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMH 464

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
              + PN  TY+ L+ ++      E+      EM  KG   ++  YN+++      G   
Sbjct: 465 AREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVK 524

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +  +  + M   +N  PD  TF+++I        +  A  +FN M +   +P+      +
Sbjct: 525 KGQQFLQKMMQ-DNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMI 583

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I  + +    ++  R   ++   GI PD
Sbjct: 584 INGFSEQGNMEEAGRVFKKMGASGIEPD 611


>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           velutina]
          Length = 382

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 138 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 197

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 198 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 257

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 258 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGE 312

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   ++    K ++  +VV   +++  LG  PD      +LN
Sbjct: 313 VKDITVFERMVHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 359



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 83

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 84  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 143

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 144 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 203

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 204 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 262

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 263 AGLVAHAKRLLHELKRPDNIPRD 285



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 182

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SM+ I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 325 ELGITPD 331
             G+  D
Sbjct: 243 SSGVEID 249



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 262 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDIT 317

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 318 VFERMVHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 377

Query: 218 KEKG 221
           +E G
Sbjct: 378 QEVG 381


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 3/222 (1%)

Query: 112 ARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           AR +K    PN   ++ LI      G  +  + +Y +M   G+ PN +TYN L++ +   
Sbjct: 327 ARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 386

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
            R      I+  M  +G   N  TY  +++        E  + ++ +M + G   +V  Y
Sbjct: 387 GRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTY 446

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           NTL+      G  + A  + + MK +  C+PD WT++ +++  S  GK+  A   F EM+
Sbjct: 447 NTLINGYLTKGNVNNAARLLDLMKEN-GCEPDEWTYNELVSGFSKWGKLESASFYFQEMV 505

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           E G  PN    T+LI  + K  + D  +  L R+ E+G  P+
Sbjct: 506 ECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPN 547



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 5/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R  N+++AFG++DR   E    DPN+  +STLI      G  D  L++ EEM   G++P 
Sbjct: 245 RNRNLDLAFGVFDRMVKEG--CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPT 302

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY   +  +   +   +   +   M   G  PN  TY +L+    R    E  + +Y 
Sbjct: 303 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 362

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M ++G+  +   YN L+      G    A +IF  M+       ++ T++ +I      
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME-GHGSLANTQTYNEIIKGLCLG 421

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           G + +A  +F +ML+ G  P +    +LI  Y      ++  R L+ + E G  PD+
Sbjct: 422 GDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 478



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 5/232 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV  A  L D  +      D   ++ L+  +   G  +     ++EM   G+ PN ++Y
Sbjct: 457 GNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSY 516

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+D   +  +     ++ K M + G +PN  +Y +++    +     +   +  +M E
Sbjct: 517 TALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVE 576

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+  +V  Y TL+      G T  AF+IF DM+  + C P+ +T+SS+I      GK  
Sbjct: 577 QGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRK-CLPNLYTYSSLIYGLCQEGKAD 635

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EAE     M E G EP L   ++L+    +  R  +  + +  + E G  PD
Sbjct: 636 EAE----RMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPD 683



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 101/203 (49%), Gaps = 1/203 (0%)

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           +G  N+Y++M   G++P+++T+N L++ + +  +  + + I  ++    LSP+  TY SL
Sbjct: 180 EGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSL 239

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           +  + R R  +    V+  M ++G   +   Y+TL+    + G  DEA ++ E+M   + 
Sbjct: 240 ILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEM-IEKG 298

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            +P  +T++  IT         EA  +   M + G  PN+   T+LI    +  + +  +
Sbjct: 299 IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAI 358

Query: 318 RALNRLPELGITPDDRFCGCLLN 340
              +++ + G+ P+      L+N
Sbjct: 359 GLYHKMLKEGLVPNTVTYNALIN 381



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 7/201 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  + AF ++     EK +  PN ++    +YG     +G  +  E M  IG +P + 
Sbjct: 595 RNGRTQFAFKIFHDM--EKRKCLPNLYTYSSLIYGLCQ--EGKADEAERMSEIGCEPTLD 650

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+  + R  R ++ + + K+M + G  P+   Y SLL A+ +    +  L ++  +
Sbjct: 651 TYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSI 710

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRG 276
           + KG QL +++Y  L+      G  +EA  +F++M   E N     WT   ++      G
Sbjct: 711 EAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTV--LVDGLLKEG 768

Query: 277 KVSEAEAMFNEMLEAGFEPNL 297
           ++     + + M    F PN+
Sbjct: 769 ELDLCMKLLHIMESKNFTPNI 789



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 108/222 (48%), Gaps = 11/222 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           ++ G V++A  L  R   E+   +PN  +++ +I        F     + ++M   G+ P
Sbjct: 524 SKDGKVDIALSLLKRM--EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLP 581

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N+ITY  L+D + R  R      I+ +M      PN  TY+SL+  YG  + G+   +  
Sbjct: 582 NVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLI--YGLCQEGKADEA-- 637

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             M E G + ++  Y+TL++     G   EA ++ +DMK    C PD   + S++ I  C
Sbjct: 638 ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFC-PDREIYYSLL-IAHC 695

Query: 275 RG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           +  +V  A  +F+ +   GF+ +L +  +LI    KA + ++
Sbjct: 696 KNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEE 737



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           VE A  LY +  N   +     F+TLI +    G       +  ++    + P++ TY +
Sbjct: 179 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTS 238

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+    R +       ++  M   G  PN  TY++L+         ++ L +  EM EKG
Sbjct: 239 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKG 298

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +V  Y   +     + + +EA E+   MK    C+P+  T++++I+  S  GK+  A
Sbjct: 299 IEPTVYTYTLPITALCAIEHEEEAIELVARMK-KRGCRPNVQTYTALISGLSRLGKLEVA 357

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQ--CYG 308
             ++++ML+ G  PN     +LI   C G
Sbjct: 358 IGLYHKMLKEGLVPNTVTYNALINELCVG 386



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +V     E++  G   +  +  +LL    +    E   ++Y++M   G+Q S+  +NTL+
Sbjct: 146 RVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLI 205

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAG 292
            + +  G   EA E+        +  PD +T++S+I +  CR + +  A  +F+ M++ G
Sbjct: 206 NILSKKGKVREA-ELILSQIFQYDLSPDVFTYTSLI-LGHCRNRNLDLAFGVFDRMVKEG 263

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +PN    ++LI       R D+ +  L  + E GI P
Sbjct: 264 CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 1/236 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  L    +++   ++   F+T +  Y   G  D  L +   M+  G+  ++ 
Sbjct: 369 KAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVF 428

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L + + +  R  + K I   M + G+ PN  T+   +  Y +     +   ++R+M
Sbjct: 429 TYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDM 488

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++KG   ++  YNTL+          +A +I  +M  ++   PD +T+SS+I      G+
Sbjct: 489 EKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEM-INKGLLPDLYTYSSLIHGECIVGR 547

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           V EA  +FNEM   G   N+   TS+I    K  R D+  +  + + ++G+ PDDR
Sbjct: 548 VDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDR 603



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 8/302 (2%)

Query: 98  RAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPN 155
           R G V+     + R   + K+ I   + + +I +    G  +    + +EM   G VKPN
Sbjct: 192 RCGEVDFCVRFFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPN 251

Query: 156 MITYNNLLDT-MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + TYN LL+  +GR  R   V  I K M    +  +  TY+ L++ Y  +   E+   ++
Sbjct: 252 VFTYNTLLNAYVGRKDRK-GVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIF 310

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM+EK +++ V +Y+++++    +G    AF +F++M S  +  P++ T+ ++I     
Sbjct: 311 EEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEM-SQRDIVPNAHTYGALIGGVCK 369

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G++  AE +  EM   G + NL +  + +  Y +  + D+ +R    + + GI  D   
Sbjct: 370 AGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFT 429

Query: 335 CGCLLNVMTQTPKEELGKLV--ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
              L N + +  + +  K +    VEK          + +E    EG+   EA  LF  +
Sbjct: 430 YNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNL-AEAERLFRDM 488

Query: 393 SK 394
            K
Sbjct: 489 EK 490



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 3/153 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   F+  I++Y   GN      ++ +M+  G  PN+ITYN L+D   + ++  Q  
Sbjct: 458 VKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAH 517

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I  EM + GL P+  TY+SL+         ++ L ++ EM+ KG+  +V  Y ++++  
Sbjct: 518 KIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGL 577

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +  G  DEAF+++++M       PD   F+S++
Sbjct: 578 SKEGRADEAFKLYDEMMKI-GLIPDDRVFTSLV 609



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 15/219 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------- 150
           R G ++ A  L  +A  EK  I+ + F+     Y    N    L+ Y+E K I       
Sbjct: 404 RRGKMDEALRL--QAIMEKKGINADVFT-----YNILANGLCKLHRYDEAKCILNSMVEK 456

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           GVKPN++T+   ++   +     + + ++++M   G  PN  TY +L+ AY +    +  
Sbjct: 457 GVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQA 516

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             +  EM  KG+   +  Y++L+     VG  DEA ++F +M+  +    +  T++SMI+
Sbjct: 517 HKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMR-LKGITRNVATYTSMIS 575

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
             S  G+  EA  +++EM++ G  P+  V TSL+  + K
Sbjct: 576 GLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSFHK 614



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPWQVKTIYK 180
           +S LI+ Y ++G+ +    ++EEM+   ++ ++  Y++++     +G  KR +    ++ 
Sbjct: 290 YSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAF---ALFD 346

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM+   + PN +TY +L+    +A   E    +  EM+ KG+ L++ ++NT +      G
Sbjct: 347 EMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRG 406

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             DEA  + + +   +    D +T++ +        +  EA+ + N M+E G +PN+   
Sbjct: 407 KMDEALRL-QAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTF 465

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           T  I+ Y K     +  R    + + G  P+
Sbjct: 466 TMFIEIYCKEGNLAEAERLFRDMEKKGEVPN 496



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L R     R  ++T+ VY  ++EKG+ +       LL      G  D     F  M  S 
Sbjct: 151 LFRVCSDNRLFDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVESN 210

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPNLFVLTSLIQCY-GKAQR-- 312
             +    + + +I +   RG+V +A+ + +EM+  G  +PN+F   +L+  Y G+  R  
Sbjct: 211 KFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKG 270

Query: 313 TDDVVRALNR 322
            D++++ + +
Sbjct: 271 VDEILKLMEK 280


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ L+++   +G  D     Y +M A G  PN  TY  LL ++ +A+R  + +++++ M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G SPN  +Y+ L+    R +  ++   +  EM + G Q +V  Y +LL+    +G  
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EA ++F  M     C PD   ++ +I   S +G + EA  +F EMLE G  P +F   S
Sbjct: 139 KEAVDLFSRM-VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
           L+  + +      V      +   G  P+        D FC
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 111/214 (51%), Gaps = 5/214 (2%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+   L+  +   G+      ++ EM+++G  P++++YN L+  M    +P + + +
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRL 284

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM  +G+ P+  +Y  L+  Y ++   +  + ++ E+ + G++     Y+T++     
Sbjct: 285 LREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCR 344

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNL 297
            G    AF +F+DM ++ +  PD+     ++ I  CRG +++E+  +F  M++    P +
Sbjct: 345 AGKVGAAFVVFKDMIANGS-APDAAVVIPLV-IGLCRGERLTESCELFQAMVKFECVPLI 402

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                L+    KA+R+DDV    + L E G +PD
Sbjct: 403 PEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPD 436



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 107/235 (45%), Gaps = 3/235 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  L+ R        D   ++ LI  +   G+      ++EEM   G  P + 
Sbjct: 134 KMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVF 193

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+LL    R     +V++++K+M   G  PN  T+ +LL  + +     +   ++ EM
Sbjct: 194 TYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEM 253

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +  G    V  YNTL+  MC+  G   EA  +  +M  S    PD  +++ +I   S  G
Sbjct: 254 RSLGCPPDVVSYNTLIRGMCSK-GKPHEAQRLLREMIRS-GVGPDIVSYNILIDGYSKSG 311

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +  A  +F E+ ++G EP+ F  +++I C  +A +          +   G  PD
Sbjct: 312 ALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPD 366



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 38/248 (15%)

Query: 121 PNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRP--- 172
           PN FS  I + G       D    +  EM   G +PN++TY +LL     MG+ K     
Sbjct: 85  PNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDL 144

Query: 173 -----------------------------WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
                                         +   +++EM + G  P   TY SLL  + R
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSR 204

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
                   S++++M  +G   ++  +N LL     +G   EA  +F +M+S   C PD  
Sbjct: 205 KGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL-GCPPDVV 263

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           +++++I     +GK  EA+ +  EM+ +G  P++     LI  Y K+   D  ++    +
Sbjct: 264 SYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEI 323

Query: 324 PELGITPD 331
           P+ G+ PD
Sbjct: 324 PKSGLEPD 331



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 1/174 (0%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++YN LL+ + ++ R   V   Y +M   G  PN  TY  LLR+  +A+  E+  SV+R 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G   +V  Y+ L+A        DEA E+  +M    + QP+  T+ S+++     G
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGH-QPNVVTYGSLLSGLCKMG 136

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           K+ EA  +F+ M+  G  P+  V   LI  + K     +  R    + E G  P
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP 190


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 7/233 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-WQVKT 177
           PNA  F+TLI  +  AG  +  + ++ EM+ IG K  ++TYN L+D++ + +   +    
Sbjct: 276 PNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVD 335

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++ ++   GL+P   TY SL++ +  AR   + +  + EM+ K    +V  Y+ L+    
Sbjct: 336 LFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAP-NVITYSILIDGLC 394

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPN 296
            V    EA +  EDMK+     P   T+  +I   C C G++  A   F +M  AG  PN
Sbjct: 395 KVRRMKEAAKTLEDMKA-HGYTPTVVTYGGLINGFCKC-GELKSALLFFEKMKLAGCAPN 452

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             +  +LI    KA+R +D +R L  +   G  PD     CL++ +    + E
Sbjct: 453 TVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVE 505



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 45/252 (17%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA  ++ LI+ +   G     ++V+ +MK+ G+ PN  T N LL  +    +      +
Sbjct: 30  PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKL 89

Query: 179 YKEMTDNGLSPNWNTYASLLRAY---GRARYG---------------------------- 207
           ++EM      P   ++  LLR +   GR R                              
Sbjct: 90  FREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCW 149

Query: 208 --------EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
                   E  +  ++EMK  G++  +  Y+ LL+  +D G   EA  +F  M     C 
Sbjct: 150 ENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAM----TCS 205

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           PD  T++ ++      G+  EA+++  E+L+AG+EPN+F  + +I CY K  + ++    
Sbjct: 206 PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEV 265

Query: 320 LNRLPELGITPD 331
             ++ E    P+
Sbjct: 266 FMKMIESNCVPN 277



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 113/236 (47%), Gaps = 6/236 (2%)

Query: 90  LKEKSYDTRAGN-VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 148
           LK   ++ ++ N +E A   +   +      D  ++  L+     +G        +    
Sbjct: 144 LKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMA---EAHALFS 200

Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
           A+   P+++TYN L+D   +  + ++ +++ KE+   G  PN  TY+ ++  Y +    E
Sbjct: 201 AMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVE 260

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           +   V+ +M E     +   +NTL+A     G  ++A ++F +M+    C+    T++++
Sbjct: 261 EAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKI-GCKATIVTYNTL 319

Query: 269 I-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           I ++C  RG V  A  +FN++  AG  P +    SLIQ +  A+R  + ++  + +
Sbjct: 320 IDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEM 375



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 5/208 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  L+++            +++LI+ +  A      +  ++EM+     PN+I
Sbjct: 326 KRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEG-KCAPNVI 384

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+D + + +R  +     ++M  +G +P   TY  L+  + +    +  L  + +M
Sbjct: 385 TYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKM 444

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G   +  ++NTL+         ++   +   M  +E C+PD  T++ +I+      +
Sbjct: 445 KLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMH-AEGCKPDVITYNCLISGLCSANR 503

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           V +A+ +F+ M  A   PN+     LI+
Sbjct: 504 VEDAQRLFDGMACA---PNVTTFNFLIR 528



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           E+MKA G  P ++TY  L++   +          +++M   G +PN   + +L+    +A
Sbjct: 407 EDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKA 466

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
               D L +   M  +G +  V  YN L++        ++A  +F+ M     C P+  T
Sbjct: 467 ERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMA----CAPNVTT 522

Query: 265 FSSMITICSCRGKVSEAEAMFN 286
           F+ +I     + KV EA  + +
Sbjct: 523 FNFLIRGLCAQKKVEEARNILD 544



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 1/129 (0%)

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL  +  A++  Q   ++KE+     +PN +TY  L+R + +       +SV+ +MK 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G+  + +  NTLL    ++G    A ++F +M++     P S + + ++      G+V 
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPF-LPTSASHNILLRGFFMAGRVR 119

Query: 280 EAEAMFNEM 288
           +A A   +M
Sbjct: 120 DALAHLQDM 128


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 130/278 (46%), Gaps = 4/278 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG V      +++   +    +  +++ +I  +      D   N ++EM+  G+ PN++T
Sbjct: 440 AGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVT 499

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N L+D   +     + + +   + ++G  P+  T++S++    RA+  ED L  + EM 
Sbjct: 500 FNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMV 559

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G+  +   YN L+     +G    + ++   M+ ++   PD ++F+++I      GKV
Sbjct: 560 MWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQ-TDGINPDVFSFNALIQSFCRMGKV 618

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            +A+ +F+ ML  G  P+ +   + I+ + ++ R ++       +   G  PD   C  +
Sbjct: 619 EDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNII 678

Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 376
           L+ + +  + E  +    + K+ S+ G +V      +D
Sbjct: 679 LDALVKQDQFEAAQK---IAKTCSEWGILVNFAAISED 713



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 144/368 (39%), Gaps = 28/368 (7%)

Query: 41  LQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASK-------LKEK 93
            + + ++L     ++  ++ +NP YP        K YIWV+   P  +K       L   
Sbjct: 104 FKAKRITLNSHSVASVLQNQENPLYP-------LKFYIWVSNMDPLFAKDQSVKGVLANC 156

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
            Y  R G V ++  L    +   +RI+      LI  +G  G    C  ++ ++  +G+ 
Sbjct: 157 LY--RKGPVVLSVELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGIS 214

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+   YN ++D + ++         +++M+ +   P+  TY  L+    R+   ++ L +
Sbjct: 215 PSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRL 274

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT--- 270
            ++M+  G   +V  Y  L+    +    DEAF + E MK+ +   P   T  S I    
Sbjct: 275 VKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARK-VSPSEATIRSFIHGVF 333

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNL--FVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
            C    K  E    F E      EP L      +L+ C        +    L +  ++G 
Sbjct: 334 RCVAPNKAFELAIEFIER-----EPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGH 388

Query: 329 TPDDRFCGCLLNVMTQT-PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 387
            PD       +N + +     E+  +++   +   K G+   L L +         E   
Sbjct: 389 KPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNH 448

Query: 388 LFNSISKD 395
            FN + KD
Sbjct: 449 YFNQMVKD 456



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 92/182 (50%), Gaps = 1/182 (0%)

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           IG KP+  T+N  ++ + +     +V  I     + G+   ++TY +L++A   A    +
Sbjct: 386 IGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTE 445

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
               + +M + G+  +V  YN ++         D+A   F++M+  +   P+  TF+++I
Sbjct: 446 GNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQ-YKGIPPNLVTFNTLI 504

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G++ ++  +   +LE GF+P++F  +S+I    +A++ +D +   + +   G++
Sbjct: 505 DGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLS 564

Query: 330 PD 331
           P+
Sbjct: 565 PN 566



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 3/191 (1%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           N+ +     G+K    TY  L+  +  A +  +    + +M  +GL  N  +Y  ++  +
Sbjct: 413 NILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCF 472

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            +    +   + ++EM+ KG+  ++  +NTL+      G   ++ ++   M      +PD
Sbjct: 473 CKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLV-MLLEHGFKPD 531

Query: 262 SWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
            +TFSS+I    CR K + +A   F+EM+  G  PN      LI            ++ L
Sbjct: 532 IFTFSSIID-GLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLL 590

Query: 321 NRLPELGITPD 331
            ++   GI PD
Sbjct: 591 RKMQTDGINPD 601



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 101/270 (37%), Gaps = 36/270 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++ ++++A+  + +   +  + D   ++ LI     +G  D  L + ++M+ +G  PN+
Sbjct: 228 VKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNV 287

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  L+D    AK+  +   + + M    +SP+  T  S +    R         +  E
Sbjct: 288 FTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIE 347

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS---------- 266
             E+   L     +TLL   +      EA  + +      + +PDS TF+          
Sbjct: 348 FIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGH-KPDSATFNIAMNCLIKGF 406

Query: 267 -------------------------SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
                                    ++I      GKV+E    FN+M++ G   N+    
Sbjct: 407 DLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYN 466

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +I C+ K    D        +   GI P+
Sbjct: 467 MVIDCFCKTSMMDKATNTFKEMQYKGIPPN 496


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 105/198 (53%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           ++  +   G +P +ITY  LL  + R KR   + ++  ++  NGL P+   + +++ A+ 
Sbjct: 93  IFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFS 152

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            +   ++ + ++R+MK++G + + + +NTL+    + G  +E  ++ + M   EN +P+ 
Sbjct: 153 ESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPND 212

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            TF+S+I     + +++EA  +  +M  +G +P++    +L + Y +   T      +  
Sbjct: 213 RTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILE 272

Query: 323 LPELGITPDDRFCGCLLN 340
           +    + P++R CG ++N
Sbjct: 273 MQNNRVMPNERTCGIIIN 290



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 124/274 (45%), Gaps = 43/274 (15%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL--------------- 141
           + +GNV+ A  ++ + ++   +   + F+TLIK YG AG  + CL               
Sbjct: 152 SESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPN 211

Query: 142 ---------------------NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
                                NV  +M A G++P+++TYN L     +     + + +  
Sbjct: 212 DRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMIL 271

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM +N + PN  T   ++  Y +    +D L     M+  G+  ++ ++N+L+    D+ 
Sbjct: 272 EMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDIT 331

Query: 241 YT---DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            T   DEA  + E+       +PD  TFS+++   S  G + + + +F++M++AG EP++
Sbjct: 332 DTDGVDEALTLMEEF----GVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDI 387

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              + L + Y +A   +     L  + + G+ P+
Sbjct: 388 HAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPN 421



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 100/209 (47%), Gaps = 2/209 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TL+        F    ++  +++  G+KP+ + +N +++    +    +   I+++M 
Sbjct: 109 YTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMK 168

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCADVGYT 242
           D G  P  +T+ +L++ YG A   E+ L +   M +E+ ++ +   +N+L+    +    
Sbjct: 169 DRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRI 228

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EA+ +   M +S   QPD  T++++    +  G+ S AE M  EM      PN      
Sbjct: 229 TEAWNVVYKMAAS-GLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGI 287

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +I  Y K  +  D +R L R+   G+ P+
Sbjct: 288 IINGYCKEGKMKDALRFLYRMRNYGVHPN 316



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 5/200 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G ++ A     R RN  + + PN   F++LIK +    + DG       M+  GVKP+
Sbjct: 294 KEGKMKDALRFLYRMRN--YGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPD 351

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++T++ +++         + + I+ +M   G+ P+ + ++ L + Y RA   E   S+  
Sbjct: 352 VVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLT 411

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M + G+Q +V ++ T+++     G  + A  ++E M     C P+  TF ++I      
Sbjct: 412 AMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGIC-PNLKTFETLIWGYGEA 470

Query: 276 GKVSEAEAMFNEMLEAGFEP 295
            +  +AE +   M + G  P
Sbjct: 471 KEPQKAEELLQIMEQKGVAP 490



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            RAG  E A  L       K  + PN   F+T+I  + +AG  +    VYE+M  +G+ P
Sbjct: 398 VRAGEPEKAESLLTAM--GKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICP 455

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 189
           N+ T+  L+   G AK P + + + + M   G++P
Sbjct: 456 NLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAP 490



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 42/80 (52%)

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           + ++ I   +GK  EA+ +FN + E G  P L   T+L+    + +R   +   +++L +
Sbjct: 75  TKLMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEK 134

Query: 326 LGITPDDRFCGCLLNVMTQT 345
            G+ PD  F   ++N  +++
Sbjct: 135 NGLKPDSVFFNAMINAFSES 154


>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 989

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 2/185 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ LI  Y   G     +++YE MK  GVKPN + Y +L++    +    +    +K M 
Sbjct: 585 YAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAESGMVEEAIQYFKLME 644

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           ++G+  N     SL++AY +    E+   VY +MK+ G    V   N++L++CAD+G   
Sbjct: 645 EHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDVAASNSMLSLCADLGIVS 704

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  IF D++    C  D  +F++M+ +    G + EA  +  EM E+G   +      +
Sbjct: 705 EAESIFNDLREKGTC--DVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLRDCTSFNQV 762

Query: 304 IQCYG 308
           + CY 
Sbjct: 763 LACYA 767



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 40/291 (13%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           VE     Y +      R D   ++ +IK YG A   +  L++++ MK  G  P+  TYN+
Sbjct: 493 VEAETVFYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEKALSIFKGMKNQGTWPDECTYNS 552

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+  +         + I  EM D+G  P   TYA+L+ +Y R     D + +Y  MK+ G
Sbjct: 553 LIQMLAGVDLVDDAQRILAEMLDSGCKPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTG 612

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK------------------SSENC----- 258
           ++ +  +Y +L+   A+ G  +EA + F+ M+                  S   C     
Sbjct: 613 VKPNEVVYGSLINGFAESGMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAYSKVGCLEEAR 672

Query: 259 -----------QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
                       PD    +SM+++C+  G VSEAE++FN++ E G   ++    +++  Y
Sbjct: 673 RVYDKMKDSGGGPDVAASNSMLSLCADLGIVSEAESIFNDLREKG-TCDVISFATMMYLY 731

Query: 308 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
                 D+ +     + E G+  D   C     V+     +  G+L EC E
Sbjct: 732 KGMGMLDEAIEVAEEMRESGLLRD---CTSFNQVLACYAAD--GQLRECCE 777



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/359 (20%), Positives = 153/359 (42%), Gaps = 44/359 (12%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G++  A  L  +   +    D   ++ L+ L+  AG+ +  L  Y  ++ +G+ P+ +T+
Sbjct: 351 GHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTH 410

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY------GRAR-------- 205
             +L  + + K   + + +  EM  N +  + ++   +++ Y      G+A+        
Sbjct: 411 RAVLHILCQRKMVAEAEAVMAEMDRNSIRIDEHSVPVIMQMYVNEGLVGQAKALFERFQL 470

Query: 206 ---------------YGEDTLSV------YREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
                          Y E  L V      Y +    G +  V  YN ++         ++
Sbjct: 471 DCVLSSTTLAAVMDVYAEKGLWVEAETVFYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEK 530

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  IF+ MK+ +   PD  T++S+I + +    V +A+ +  EML++G +P      +LI
Sbjct: 531 ALSIFKGMKN-QGTWPDECTYNSLIQMLAGVDLVDDAQRILAEMLDSGCKPGCKTYAALI 589

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
             Y +     D V     + + G+ P++   G L+N   ++   EE  +  + +E+   +
Sbjct: 590 ASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAESGMVEEAIQYFKLMEEHGVQ 649

Query: 364 LGYVVKLLLEEQDIEGDFKKEATELFNSISK-----DVKKAYCNCLIDLCVNLNLLENA 417
             ++V   L +   +    +EA  +++ +       DV  A  N ++ LC +L ++  A
Sbjct: 650 SNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDV--AASNSMLSLCADLGIVSEA 706



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 129/333 (38%), Gaps = 65/333 (19%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+TLI LYG AG  +   N++ EM   GV  + +T+N ++ T G      + +++ K+M 
Sbjct: 305 FNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKME 364

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G+SP+  TY  LL  +  A   E  L  YR +++ G+      +  +L +        
Sbjct: 365 EKGISPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTHRAVLHILCQRKMVA 424

Query: 244 EAFEIFEDMKSSE---------------------------------NCQPDSWTFSSMIT 270
           EA  +  +M  +                                  +C   S T ++++ 
Sbjct: 425 EAEAVMAEMDRNSIRIDEHSVPVIMQMYVNEGLVGQAKALFERFQLDCVLSSTTLAAVMD 484

Query: 271 ICSCRGKVSEAEAMF-NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           + + +G   EAE +F  +    G   ++     +I+ YGKA+  +  +     +   G  
Sbjct: 485 VYAEKGLWVEAETVFYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEKALSIFKGMKNQGTW 544

Query: 330 PDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
           PD+    C  N + Q                          +L   D+  D ++   E+ 
Sbjct: 545 PDE----CTYNSLIQ--------------------------MLAGVDLVDDAQRILAEML 574

Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
           +S  K   K Y   LI   V L LL +A  L E
Sbjct: 575 DSGCKPGCKTYA-ALIASYVRLGLLSDAVDLYE 606



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 112/262 (42%), Gaps = 15/262 (5%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V  A  +++  R EK   D  +F+T++ LY   G  D  + V EEM+  G+  +  ++
Sbjct: 701 GIVSEAESIFNDLR-EKGTCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLRDCTSF 759

Query: 160 NNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLS----VY 214
           N +L       +  +   ++ EM  +  L  +W T+ +L     +     + ++     Y
Sbjct: 760 NQVLACYAADGQLRECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVAQLQTAY 819

Query: 215 REMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            E K      ++ TL++ +       G    A E  +++   E    + + ++++I   S
Sbjct: 820 NEAKPLATPAITATLFSAM-------GLYAYALESCQELTRDE-IPREHYAYNAVIYTYS 871

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G +  A   +  M E G EP++     L+  YGKA   + V R  +RL    + P+  
Sbjct: 872 ASGDIDMALKTYMRMQEKGLEPDVVTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPNQS 931

Query: 334 FCGCLLNVMTQTPKEELGKLVE 355
               + +      +++L  +V+
Sbjct: 932 LFKAVRDAYVSANRQDLADVVK 953



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 1/185 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A   +        + +    ++LIK Y   G  +    VY++MK  G  P++  
Sbjct: 630 SGMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSGGGPDVAA 689

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            N++L          + ++I+ ++ + G + +  ++A+++  Y      ++ + V  EM+
Sbjct: 690 SNSMLSLCADLGIVSEAESIFNDLREKG-TCDVISFATMMYLYKGMGMLDEAIEVAEEMR 748

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E G+    T +N +LA  A  G   E  E+F +M        D  TF ++ T+    G  
Sbjct: 749 ESGLLRDCTSFNQVLACYAADGQLRECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVP 808

Query: 279 SEAEA 283
           SEA A
Sbjct: 809 SEAVA 813



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN+I YN +L  +GRA +  +++  + EM  NG+ P  NTY  L+  YG+A   ++ L  
Sbjct: 137 PNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALLW 196

Query: 214 YREMKEK 220
            + M ++
Sbjct: 197 IKHMGQR 203



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 9/121 (7%)

Query: 105 AFGLYDRA--------RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           A GLY  A        R+E  R +  A++ +I  Y  +G+ D  L  Y  M+  G++P++
Sbjct: 837 AMGLYAYALESCQELTRDEIPR-EHYAYNAVIYTYSASGDIDMALKTYMRMQEKGLEPDV 895

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T   L+   G+A     VK ++  +T   L PN + + ++  AY  A   +    V +E
Sbjct: 896 VTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPNQSLFKAVRDAYVSANRQDLADVVKKE 955

Query: 217 M 217
           M
Sbjct: 956 M 956



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 24/245 (9%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ +++  G AG +D     + EM   GV P   TY  L+D  G+A    +    
Sbjct: 137 PNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALLW 196

Query: 179 YKEMTDNGLSPNWNTYASLLRAY------------------GRARYGEDTLSVYREMKEK 220
            K M      P+  T A+++R +                  G+    +  L    +  + 
Sbjct: 197 IKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAGKVNLDDLDLDSIDDFPKN 256

Query: 221 G-MQLSVTLYNTLLAMCADVGY---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           G  Q  V L   L      VG     +++        SS      + TF+++I +    G
Sbjct: 257 GSAQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLYGKAG 316

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++++A  +F+EML++G   +     ++I   G      +    L ++ E GI+PD +   
Sbjct: 317 RLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYN 376

Query: 337 CLLNV 341
            LL++
Sbjct: 377 ILLSL 381


>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           trifolia]
          Length = 440

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 183 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 242

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G ++   L+ T++
Sbjct: 243 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMI 302

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 303 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 357

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 358 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAXVLN 404



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNT 120

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y+TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F 
Sbjct: 121 ASYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EPN+    +L++ YG A+
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAE 204



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 113/232 (48%), Gaps = 8/232 (3%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 29  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKXCDYSKAISIFSRLKRSGFTPDLVAY 88

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 89  NAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMRE 148

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
               L +T  N ++ +   +G   EA ++F  M+     +P+  ++++++ +        
Sbjct: 149 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM-GIEPNVVSYNTLLRVYGDAELFG 207

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA  +F  M     E N+    S++  YGK    +     +  +   GI P+
Sbjct: 208 EAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPN 259



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 69  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLLT 128

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 129 MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 188

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 189 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 248

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 249 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYER 307

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 308 AGLVAHAKRLLHELKRPDNIPRD 330



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 307 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 363 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVYMEM 422

Query: 218 KEKGMQLSVTLYNTLLAM 235
           +E G   S  ++  +L++
Sbjct: 423 QEVGCVFSDEVHFQMLSL 440


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 2/236 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+  + E  F L  +      + D   ++ +I  +  +GN    + ++++MK  G KP  
Sbjct: 104 TKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTT 163

Query: 157 ITYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            T+N L+   G A +P + +K ++    D  + PN  TY  L+RA+   +  E+  +V  
Sbjct: 164 STFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLH 223

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+Q  V  YN L    A  G T  A ++  +M+  E   P+  T   ++      
Sbjct: 224 KMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQ-YEKVAPNERTCGIIVNGYCKE 282

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G + EA      M E G  PNL +  SLI+ +     TD V  AL  + E G+ PD
Sbjct: 283 GNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPD 338



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 132/297 (44%), Gaps = 43/297 (14%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG--------------------- 135
           + +GNV+ A  ++ + ++   +   + F+TLIK YG AG                     
Sbjct: 139 SESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPN 198

Query: 136 ---------------NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
                          N +   NV  +M A G++P+++TYN L     +     + + +  
Sbjct: 199 DRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLIL 258

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM    ++PN  T   ++  Y +     + L     MKE G+  ++ ++N+L+    D+ 
Sbjct: 259 EMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDIT 318

Query: 241 YTD---EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            TD   EA  + E+       +PD  TFS+++   S  G + + + +FN+M +AG EP++
Sbjct: 319 DTDGVDEALTLMEEY----GVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDI 374

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
              + L + Y +A  T++    L  + + G+ P+   C  +++      K E  K+V
Sbjct: 375 HAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMV 431



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/201 (19%), Positives = 105/201 (52%), Gaps = 6/201 (2%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           +++ +   G +P +ITY  L+  + + K    +  +  ++ +NG+ P+   Y +++ A+ 
Sbjct: 80  IFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFS 139

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            +   ++ + ++++MK+ G + + + +NTL+    + G  +E  ++   M    + +P+ 
Sbjct: 140 ESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPND 199

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++ ++     +  + EA  + ++M+ +G +P++     L + Y +   T   +RA + 
Sbjct: 200 RTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGET---LRAEDL 256

Query: 323 LPEL---GITPDDRFCGCLLN 340
           + E+    + P++R CG ++N
Sbjct: 257 ILEMQYEKVAPNERTCGIIVN 277



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 2/171 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L++ +    +P +   I+  + ++G  P   TY +L+ A  + ++ E    +  +++E G
Sbjct: 64  LMNILIGKGKPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENG 123

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           M+    LYN ++   ++ G   EA +IF+ MK +  C+P + TF+++I      GK  E 
Sbjct: 124 MKPDSILYNAMINAFSESGNVKEAMKIFQKMKDT-GCKPTTSTFNTLIKGYGNAGKPEEG 182

Query: 282 EAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             M + M L+   +PN      L++ +   +  ++    L+++   GI PD
Sbjct: 183 LKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPD 233



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 38/221 (17%)

Query: 113 RNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           R ++  + PN   F++LIK +    + DG       M+  GVKP++IT++ +++    A 
Sbjct: 294 RMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAG 353

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
              + + I+ +M   G+ P+ + ++ L + Y RA   E+  SV   M + G++ +V +  
Sbjct: 354 LMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICT 413

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           T+++                            W        CS  GK+  A+ ++ +M E
Sbjct: 414 TIIS---------------------------GW--------CSA-GKMENAKMVYEKMCE 437

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G  PNL    +LI  Y +A++       L  + E G+ P+
Sbjct: 438 IGISPNLKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPE 478



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 41/80 (51%)

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           + ++ I   +GK  EA  +F+ ++E G  P L   T+L+    K +  + +   ++++ E
Sbjct: 62  TKLMNILIGKGKPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEE 121

Query: 326 LGITPDDRFCGCLLNVMTQT 345
            G+ PD      ++N  +++
Sbjct: 122 NGMKPDSILYNAMINAFSES 141


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 119/230 (51%), Gaps = 1/230 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++ST+I  +   G+ D   + Y EM    + PN++TYN+++  + +A+   +   + 
Sbjct: 87  DVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVL 146

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  +G+ P+  TY S++  +  +   ++ +   ++M+  G++  V  YN+L+      
Sbjct: 147 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKN 206

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA +IF+ M +    +P+  T+ +++   + +G + E   + + M+  G  PN +V
Sbjct: 207 GRCTEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 265

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            + L+  Y K ++ ++ +   +++ + G+ P+    G ++ ++ ++ + E
Sbjct: 266 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 315



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 9/276 (3%)

Query: 93  KSYDTRAGNVEMAFGLYD-RARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKA 149
           + Y T+   VEM  GL D   RN    I PN   FS L+  Y      +  + V+ +M+ 
Sbjct: 236 QGYATKGALVEM-HGLLDLMVRNG---IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 291

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
            G+ PN +TY  ++  + ++ R       +++M D GLSP    Y SL+         E 
Sbjct: 292 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 351

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
              +  EM ++G+ L+   +N+++      G   E+ ++F D+      +PD  T+S++I
Sbjct: 352 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF-DLMVRIGVKPDIITYSTLI 410

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 GK+ EA  +   M+  G +P+    ++LI  Y K  R  D +     +   G++
Sbjct: 411 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVS 470

Query: 330 PDDRFCGCLLNVMTQTPKEELGK-LVECVEKSNSKL 364
           PD      +L  + QT +    K L   + KS  +L
Sbjct: 471 PDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQL 506



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 112/235 (47%), Gaps = 5/235 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G+++  +  Y+   ++  RI PN   ++++I     A   D  + V   M   GV P+
Sbjct: 100 KEGDLDKTYSTYNEMLDQ--RISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPD 157

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TYN+++     + +P +     K+M  +G+ P+  TY SL+    +     +   ++ 
Sbjct: 158 CMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFD 217

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M ++G++  +T Y TLL   A  G   E   +  D+       P+ + FS ++   + +
Sbjct: 218 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPNHYVFSILVCAYAKQ 276

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            KV EA  +F++M + G  PN     ++I    K+ R +D +    ++ + G++P
Sbjct: 277 EKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 331



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 111/237 (46%), Gaps = 1/237 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + +   + TL++ Y T G       + + M   G+ P
Sbjct: 202 YLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 261

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N   ++ L+    + ++  +   ++ +M   GL+PN  TY +++    ++   ED +  +
Sbjct: 262 NHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 321

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++G+     +YN+L+         + A E+  +M     C  ++  F+S+I     
Sbjct: 322 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL-NTIFFNSIIDSHCK 380

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+V E+E +F+ M+  G +P++   ++LI  Y  A + D+  + L  +  +G+ PD
Sbjct: 381 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 437



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  +  L+D       + D   +STLI  Y  AG  D    +   M ++G+KP+ +
Sbjct: 380 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 439

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++   +  R      +++EM  +G+SP+  TY  +L+   + R       +Y  +
Sbjct: 440 TYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 499

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G QL ++ YN +L        TD+A  +F+++    + + ++ TF+ MI      G+
Sbjct: 500 TKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNL-CLMDLKLEARTFNIMIDALLKVGR 558

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             EA+ +F      G  PN
Sbjct: 559 NDEAKDLFVAFSSNGLVPN 577



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 1/194 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG ++ A  L     +   + D   +STLI  Y         L ++ EM++ GV P++IT
Sbjct: 416 AGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIIT 475

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +L  + + +R    K +Y  +T +G     +TY  +L    + +  +D L +++ + 
Sbjct: 476 YNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLC 535

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              ++L    +N ++     VG  DEA ++F    SS    P+ WT+  M      +G +
Sbjct: 536 LMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF-SSNGLVPNYWTYRLMAENIIGQGLL 594

Query: 279 SEAEAMFNEMLEAG 292
            E + +F  M + G
Sbjct: 595 EELDQLFLSMEDNG 608



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 4/200 (2%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLR 199
           +V++E+   G+ P++ +YN LL+ +    R  +   +   M D+G    P+  +Y++++ 
Sbjct: 38  HVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVIN 96

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
            + +    + T S Y EM ++ +  +V  YN+++A        D+A E+   M  S    
Sbjct: 97  GFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS-GVM 155

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           PD  T++S++      G+  EA     +M   G EP++    SL+    K  R  +  + 
Sbjct: 156 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKI 215

Query: 320 LNRLPELGITPDDRFCGCLL 339
            + + + G+ P+    G LL
Sbjct: 216 FDSMTKRGLKPEITTYGTLL 235



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 11/262 (4%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+++I  +   G       +++ M  IGVKP++ITY+ L+D    A +  +   +   M 
Sbjct: 371 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 430

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ P+  TY++L+  Y +    +D L ++REM+  G+   +  YN +L        T 
Sbjct: 431 SVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 490

Query: 244 EAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVS-EAEAMFNEMLEAGFEPNLFVLT 301
            A E++  + KS    +  ++   ++I    C+ K++ +A  MF  +     +       
Sbjct: 491 AAKELYVGITKSGRQLELSTY---NIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFN 547

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVECVEKS 360
            +I    K  R D+           G+ P+   +     N++ Q   EEL +L   +E +
Sbjct: 548 IMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 607

Query: 361 -----NSKLGYVVKLLLEEQDI 377
                +  L ++V+ LL+  +I
Sbjct: 608 GCTVDSGMLNFIVRELLQRGEI 629



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFS 266
           ED   V+ E+  +G+   V  YN LL    D   + EA E+   M     +C PD  ++S
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           ++I      G + +  + +NEML+    PN+    S+I    KAQ  D  +  L  + + 
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 152

Query: 327 GITPD 331
           G+ PD
Sbjct: 153 GVMPD 157


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 141/310 (45%), Gaps = 21/310 (6%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   +S L++ Y  +G +     V+E+M   G+KP++I +  L+D + +  +  +  
Sbjct: 189 VQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAA 248

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +   M   GL PN  TY  L+ +  +     + L++ +EM +KG+   V  YNTL+A  
Sbjct: 249 KVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGL 308

Query: 237 ADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           + V   DEA    E+M   +   +PD  TF+S+I      G++++A  +   M E G   
Sbjct: 309 SGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMC 368

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQTPKEELGK 352
           NL     LI   G   R   V  A+N + EL   G+ PD      L+N  ++  + +  +
Sbjct: 369 NLVTYNYLI---GGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAE 425

Query: 353 LVECVEKSN---SKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCV 409
              C  +     ++L + + LL      +    + A  LFN + K       NC +D   
Sbjct: 426 KFLCTMRQRGIKAELFHYIPLLAAM--CQQGMMERAMGLFNEMDK-------NCGLDAIA 476

Query: 410 NLNLLENACK 419
              ++  ACK
Sbjct: 477 YSTMIHGACK 486



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 108/260 (41%), Gaps = 33/260 (12%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+++I      G     + V E M   G   N++TYN L+    R  +      + 
Sbjct: 334 DVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLM 393

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            E+  +GL P+  TY+ L+  + +    +        M+++G++  +  Y  LLA     
Sbjct: 394 DELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQ 453

Query: 240 GYTDEAFEIFE------------------------DMKS---------SENCQPDSWTFS 266
           G  + A  +F                         DMK+          E   PD+ T+S
Sbjct: 454 GMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYS 513

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            +I + +  G + EAE +  +M  +GF P++ V  SLI+ Y    +TD V++ ++ +   
Sbjct: 514 MLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAK 573

Query: 327 GITPDDRFCGCLLNVMTQTP 346
            +  D +    ++ +  QTP
Sbjct: 574 NVAFDPKIISTIIRLPQQTP 593



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 3/199 (1%)

Query: 108 LYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
           L D +R       PNA  ++T+++    +      + +   M+A GV+ +++TY  L+  
Sbjct: 108 LVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRG 167

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
           +  A        +  EM  +G+ PN   Y+ LLR Y R+   +D   V+ +M  +G++  
Sbjct: 168 LCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPD 227

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           V ++  L+      G T +A ++ +DM      +P+  T++ +I      G V EA  + 
Sbjct: 228 VIMFTGLIDDLCKEGKTGKAAKV-KDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLR 286

Query: 286 NEMLEAGFEPNLFVLTSLI 304
            EM + G  P++    +LI
Sbjct: 287 KEMDDKGVAPDVVTYNTLI 305



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A GL++   ++   +D  A+ST+I     +G+      + ++M   G+ P+ +TY
Sbjct: 454 GMMERAMGLFNEM-DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTY 512

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L++   +     + + + K+MT +G  P+   + SL++ Y      +  L +  EM+ 
Sbjct: 513 SMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRA 572

Query: 220 KGMQLSVTLYNTLL 233
           K +     + +T++
Sbjct: 573 KNVAFDPKIISTII 586



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 41/182 (22%)

Query: 155 NMITYNNLLDTMGR--AKRPWQVKTIYKEMTDNG---LSPNWNTYASLLRAYGRARYGED 209
           + ++YN +L  + R       Q +++  +M+        PN  +Y +++R    +R   +
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            +++ R M+  G++  V  Y TL+    D    D A E+                     
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELL-------------------- 181

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                           +EM  +G +PN+ V + L++ Y ++ R  DV +    +   GI 
Sbjct: 182 ----------------DEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIK 225

Query: 330 PD 331
           PD
Sbjct: 226 PD 227


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 3/218 (1%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  + P+  A++ LI+ +   G  +       +MK  GV P++ TYN L+   GR    
Sbjct: 416 EKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEF 475

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   I KEM DNG  PN  +Y +L+    +     +   V R+M+++G+   V +YN L
Sbjct: 476 DKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNML 535

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +  C   G  ++AF   ++M   +  + +  T++++I   S  GK+SEAE +  E+   G
Sbjct: 536 IDGCCSKGKIEDAFRFSKEM-LKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG 594

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +P++F   SLI  YG A      +     +   GI P
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKP 632



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 102/208 (49%), Gaps = 3/208 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y  AGN +    V E MKA  ++P++IT+N LL  + +A      + + KEM 
Sbjct: 252 YNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMK 311

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
           D G  P+  T++ L   Y      E  L VY    + G++++    + LL A+C + G  
Sbjct: 312 DLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKE-GKI 370

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           ++A EI    + ++   P+   +++MI     +G +  A      M + G +P+      
Sbjct: 371 EKAEEIL-GREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNC 429

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
           LI+ + +    ++  + +N++   G++P
Sbjct: 430 LIRRFCELGEMENAEKEVNKMKLKGVSP 457



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 15/257 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AGN E +F + +R + +        F+TL+K    AG  +   NV +EMK +G  P+  
Sbjct: 261 KAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAF 320

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 214
           T++ L D     ++      +Y+   D+G+  N  T + LL A    G+    E+ L   
Sbjct: 321 TFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILG-- 378

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK----SSENCQPDSWTFSSMIT 270
           REM  KG+  +  +YNT++      GY  +   +   MK      +  +PD   ++ +I 
Sbjct: 379 REMA-KGLVPNEVIYNTMID-----GYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIR 432

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G++  AE   N+M   G  P++     LI  YG+    D     L  + + G  P
Sbjct: 433 RFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMP 492

Query: 331 DDRFCGCLLNVMTQTPK 347
           +    G L+N + +  K
Sbjct: 493 NVVSYGTLINCLCKGSK 509



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 106/236 (44%), Gaps = 16/236 (6%)

Query: 112 ARNEKWRIDPNAFSTLIK--------LYGTA-------GNFDGCLNVYEEMKAIGVKPNM 156
            + +++R+  N F  +++        +YG A        +    L ++  MK   + P++
Sbjct: 155 VKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSV 214

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN L+D + + KR    + ++ EM    L P+  TY +L+  Y +A   E +  V   
Sbjct: 215 FIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRER 274

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK   ++ S+  +NTLL      G  ++A  + ++MK      PD++TFS +    S   
Sbjct: 275 MKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDL-GFVPDAFTFSILFDGYSSNE 333

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           K   A  ++   +++G + N +  + L+    K  + +     L R    G+ P++
Sbjct: 334 KAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNE 389



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 104/245 (42%), Gaps = 1/245 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+   RNE      ++ + L+        F   +NV+  +     +P+   Y   + 
Sbjct: 128 AADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQ 187

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              +     +   ++  M  + + P+   Y  L+    + +   D   ++ EM  + +  
Sbjct: 188 AAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLP 247

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S+  YNTL+      G  +++F++ E MK +++ +P   TF++++      G V +AE +
Sbjct: 248 SLITYNTLIDGYCKAGNPEKSFKVRERMK-ADHIEPSLITFNTLLKGLFKAGMVEDAENV 306

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             EM + GF P+ F  + L   Y   ++ +  +       + G+  +   C  LLN + +
Sbjct: 307 LKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCK 366

Query: 345 TPKEE 349
             K E
Sbjct: 367 EGKIE 371



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 34/226 (15%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E AF        +   ++   ++TLI      G      ++  E+   G+KP++ TY
Sbjct: 543 GKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTY 602

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL------------RAYGR---- 203
           N+L+   G A    +   +Y+EM  +G+ P   TY  L+            R +G     
Sbjct: 603 NSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMSLK 662

Query: 204 -------------ARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
                        A +G  E   ++ ++M EK + L  T YN+L+     VG   E   +
Sbjct: 663 PDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSL 722

Query: 249 FEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGF 293
            ++M + E  +P++ T++ ++   C  +  +S A   + EM E GF
Sbjct: 723 IDEMNARE-MEPEADTYNIIVKGHCEVKDYMS-AYVWYREMQEKGF 766



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 56/115 (48%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ ++  Y   G+ +   N+ ++M    +  +  TYN+L+    +  +  +V+++ 
Sbjct: 664 DLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLI 723

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            EM    + P  +TY  +++ +   +        YREM+EKG  L V + N L++
Sbjct: 724 DEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVS 778


>gi|302801820|ref|XP_002982666.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
 gi|300149765|gb|EFJ16419.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
          Length = 796

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 2/230 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++A G +   R +KW +    +FS L+  YG   +F     V  ++KA       + YN 
Sbjct: 116 DVANGFFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLADLKADKCPMTTVAYNT 175

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+   G+A +  +    YKEM D+   P+  T+ +L+  Y  A   E  L VY EM++ G
Sbjct: 176 LIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIG 235

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             L    Y  ++     VG  D A  +FE MK +E  QP++  +S++I      G++   
Sbjct: 236 CSLDRVGYEVVVPHAGKVGRLDLACMLFERMK-AEGHQPNAVAYSALIAGQLKSGRLEIG 294

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              F EM      P L    SLI+ Y K+ R +  ++    +      P+
Sbjct: 295 TKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPN 344



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 113/270 (41%), Gaps = 36/270 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV----- 152
           +A  ++ A+G Y   ++ +   D   F+TL+ LY  AG  +  L VY+EM+ IG      
Sbjct: 182 KAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDRV 241

Query: 153 ------------------------------KPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
                                         +PN + Y+ L+    ++ R       ++EM
Sbjct: 242 GYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEEM 301

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
               + P   T+ASL+ AY ++   E  L  +++M+    + ++ +Y  L+   A  G  
Sbjct: 302 RSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCIYAALVDAHAKAGML 361

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A E +E M+      P    F+ +I   +  GK   A  ++ EM   G  P+ F    
Sbjct: 362 DAALEFYERMRGVGLWLP-PLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRPSHFTCRI 420

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           ++    K  + DDV R L  + E+G+   D
Sbjct: 421 VVGAVAKGGKYDDVERILFEMQEMGLNVAD 450



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/465 (19%), Positives = 190/465 (40%), Gaps = 46/465 (9%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +++A  L++R + E  + +  A+S LI     +G  +     +EEM+++ ++P + 
Sbjct: 252 KVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEEMRSLEIRPLLG 311

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L++   ++ R       +K+M      PN   YA+L+ A+ +A   +  L  Y  M
Sbjct: 312 TFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCIYAALVDAHAKAGMLDAALEFYERM 371

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G+ L   ++  L+   A  G  + A  ++ +M+     +P  +T   ++   +  GK
Sbjct: 372 RGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGV-GLRPSHFTCRIVVGAVAKGGK 430

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             + E +  EM E G      V  S+++     +R  D      ++   G TP    C  
Sbjct: 431 YDDVERILFEMQEMGLNVADAVNDSIVKLVDD-KRISDAWELFLKVTGHGFTPHVSLCRE 489

Query: 338 LLN-VMTQTPKEELGKLVECVEKSNSKLG---YVVKL-------LLEEQDIEGDFKKEA- 385
           +L+  ++    E   +++  +++  S +    Y + L        LE +++   F +E  
Sbjct: 490 ILHGFLSCGDMEHARQMLSFMQRPGSAVDLRTYCMLLEFFLRGSRLEHEEVIISFMRETK 549

Query: 386 ------------------------------TELFNSISKDVKKAYCNCLIDLCVNLNLLE 415
                                         +EL   +    ++   N L++  V +    
Sbjct: 550 HPAHSFLCGLMGSSKHRKGQSLADYIKSFYSELEAEVDFKTRRYLTNVLLNYLVVMGQER 609

Query: 416 NACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 474
            A    ++   + +Y + I  +    W L ++S+S+GAAL  +   +    + +      
Sbjct: 610 KARSFWKVVYQIHMYPNSIVLQGDLTWCLKVRSMSIGAALIGVLCTLEKFRERILKRRFV 669

Query: 475 PPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWF 519
           P  + I TG  K       +    E+ +K L++PF    + +G F
Sbjct: 670 PQRIKILTG-SKADSDAIAVRQAIEAMMKPLDSPFIFQDEDLGSF 713


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 14/197 (7%)

Query: 186 GLSPNWN------TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           GL   W+      TY  LL+A+ R+R  +   +VY EM   G QL +  YN LL   A  
Sbjct: 223 GLIKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKD 282

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              D ++++F+DMK  ++C PD +T++ MI +    G+  E+ A+F EML  G  PNL  
Sbjct: 283 EQLDRSYKVFKDMKL-KHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIA 341

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
             ++IQ   K+   D  +     + +    P++     +LNV+    + +LG+L E +E 
Sbjct: 342 YNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVL--VAEGQLGRLDEVLEV 399

Query: 360 SN-----SKLGYVVKLL 371
           SN     S   Y+V+ L
Sbjct: 400 SNKFINKSIYAYLVRTL 416



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D +A+ ++++     G     + +  ++   G+  + + YN +L T+G+ K+   +  +Y
Sbjct: 440 DRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLY 499

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M  +G  P+  TY  L+ + GR    ++ + V+ E++    +  +  YN+L+      
Sbjct: 500 EKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKN 559

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  DEA   F +M+  +   PD  T+S++I       KV  A ++F+ M+  G  PN+  
Sbjct: 560 GDVDEAHMRFLEMQ-DKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVT 618

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              L+ C  +A RT + V    +L E G+TPD
Sbjct: 619 YNILLDCLERAGRTAETVDLYAKLREQGLTPD 650



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 104/193 (53%), Gaps = 12/193 (6%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           ++E+  GL      +KW +  NA++   L++ +  + + D   NVY EM + G + ++  
Sbjct: 217 DLELCTGLI-----KKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSNGYQLDIFA 271

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN LLD + + ++  +   ++K+M     +P+  TY  ++R  G+    E++L+++ EM 
Sbjct: 272 YNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEML 331

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            KG   ++  YNT++   +  G  D+A  +F +M  + NC+P+ +T+S ++ +    G++
Sbjct: 332 TKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKN-NCRPNEFTYSIILNVLVAEGQL 390

Query: 279 SEAEAMFNEMLEA 291
                  +E+LE 
Sbjct: 391 GR----LDEVLEV 399



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 1/159 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           LY++ + +    D   ++ LI   G  G     + V+EE+++   KP++I+YN+L++ +G
Sbjct: 498 LYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLG 557

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     +    + EM D GL+P+  TY++L+  +G+    E   S++  M  +G   ++ 
Sbjct: 558 KNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIV 617

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            YN LL      G T E  +++  ++  +   PDS T++
Sbjct: 618 TYNILLDCLERAGRTAETVDLYAKLR-EQGLTPDSITYA 655



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 123/287 (42%), Gaps = 33/287 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  E +  L++    +    +  A++T+I+    +G  D  + ++  M     +PN  
Sbjct: 316 KMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEF 375

Query: 158 TYNNLLDTM------GRAKRPWQV------KTIY----KEMTDNGLSPN--------W-- 191
           TY+ +L+ +      GR     +V      K+IY    + ++  G S          W  
Sbjct: 376 TYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSF 435

Query: 192 ------NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
                 + Y S+L +  R     + + +  ++ EKG+     +YNT+L+    +      
Sbjct: 436 HDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHL 495

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            +++E MK  +   PD +T++ +I+     GKV EA  +F E+  +  +P++    SLI 
Sbjct: 496 HDLYEKMKQ-DGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLIN 554

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
           C GK    D+       + + G+ PD      L+    +T K E+ +
Sbjct: 555 CLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMAR 601



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 129/301 (42%), Gaps = 15/301 (4%)

Query: 30  DDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNP----QYPHGKTGSSPKSYIWVNPKSP 85
           DD  S  S +  Q  SVSL   ++S   K   +P    Q+ H  +   PK        S 
Sbjct: 111 DDRFSDLS-SYFQSLSVSLTPAEASEILKSLNSPDLALQFFHRCSSLCPKFRHDAFTYSR 169

Query: 86  RASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 145
               L   S   R   V       DR   ++ R   +  + LIK++ +  + + C  +  
Sbjct: 170 ILLMLSHSSSSKRIDQVREILSQMDR---DQIRGTISTVNILIKIFSSNEDLELCTGL-- 224

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
            +K   ++ N  TY  LL    R++   +   +Y EM  NG   +   Y  LL A  +  
Sbjct: 225 -IKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDE 283

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             + +  V+++MK K        Y  ++ M   +G  +E+  +FE+M  ++ C P+   +
Sbjct: 284 QLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEML-TKGCTPNLIAY 342

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF---VLTSLIQCYGKAQRTDDVVRALNR 322
           ++MI   S  G V +A  +F  M++    PN F   ++ +++   G+  R D+V+   N+
Sbjct: 343 NTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNK 402

Query: 323 L 323
            
Sbjct: 403 F 403



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 56/102 (54%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+V+ A   +   +++    D   +STLI+ +G     +   ++++ M   G  PN++
Sbjct: 558 KNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIV 617

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           TYN LLD + RA R  +   +Y ++ + GL+P+  TYA L R
Sbjct: 618 TYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAILDR 659



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/261 (19%), Positives = 115/261 (44%), Gaps = 22/261 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+ + + AF +Y    +  +++D  A++ L+         D    V+++MK     P+  
Sbjct: 246 RSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEY 305

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++   G+  R  +   +++EM   G +PN   Y ++++A  ++   +  + ++  M
Sbjct: 306 TYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNM 365

Query: 218 KEKGMQLSVTLYNTLLAMC---ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +   + +   Y+ +L +      +G  DE  E+        N   +   ++ ++   S 
Sbjct: 366 IKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEV-------SNKFINKSIYAYLVRTLSK 418

Query: 275 RGKVSEAEAMFNEM--LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            G  SEA  +F  M     G + + ++  S+++   +  +T + +  L+++ E GI+ D 
Sbjct: 419 LGHSSEAHRLFCNMWSFHDGGDRDAYI--SMLESLCRGGKTVEAIELLSKVHEKGISTD- 475

Query: 333 RFCGCLLNVMTQTPKEELGKL 353
                   +M  T    LGKL
Sbjct: 476 -------TMMYNTVLSTLGKL 489


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 36/268 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+++ AF   D   N         ++ LI         +   ++ +EM+  GV+P+++TY
Sbjct: 336 GDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTY 395

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG-RARYGEDTLSVYREMK 218
           N  ++   R     +  +++ EM +  + P   TY SL+  +G R R  E      + +K
Sbjct: 396 NIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIK 455

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE---------------------- 256
           E GM   + ++N L+      G  D AF++ ++M +++                      
Sbjct: 456 E-GMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVE 514

Query: 257 ------------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
                         +PD  +++++I+  S RG + +A  +F+EML  GF+P L    +LI
Sbjct: 515 EAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALI 574

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDD 332
           Q Y K    D     L  +   GITPDD
Sbjct: 575 QGYSKIGEADHAEELLREMQSKGITPDD 602



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 111/222 (50%), Gaps = 9/222 (4%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E + + PN   ++T+I  Y   G F+    +++ MK   +KP+  TYN+ +  + + +R 
Sbjct: 244 EVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRI 303

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE-DTLSVYR-EMKEKGMQLSVTLYN 230
            +   +  ++ ++GL PN  TY +L+   G    G+ D    YR EM  +G+  SV  YN
Sbjct: 304 EEASGVLCKLLESGLVPNAVTYNALID--GCCNKGDLDKAFAYRDEMMNRGIVASVFTYN 361

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEML 289
            L+         +EA ++ ++M+  +  +PD  T++  I   C C G   +A ++F+EM+
Sbjct: 362 LLIHALFLEKRIEEAEDMIKEMR-EKGVEPDVVTYNIQINGYCRC-GNAKKALSLFDEMV 419

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           E    P +   TSLI  +GK  R  +      +  + G+ PD
Sbjct: 420 EKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPD 461



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 105/213 (49%), Gaps = 11/213 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R GN + A  L+D    +  R     +++LI ++G           +++    G+ P++I
Sbjct: 404 RCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDII 463

Query: 158 TYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
            +N L+D     G   R +Q   + KEM +  + P+  T+ +L++ Y R R  E+   + 
Sbjct: 464 MFNALIDGHCVNGNIDRAFQ---LLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLL 520

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EMKE+G++     YNTL++  +  G   +A E+F++M S     P   T++++I   S 
Sbjct: 521 DEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSL-GFDPTLLTYNALIQGYSK 579

Query: 275 RGKVSEAEAMFNEMLEAGFEPN----LFVLTSL 303
            G+   AE +  EM   G  P+    L+V+ ++
Sbjct: 580 IGEADHAEELLREMQSKGITPDDSTYLYVIEAM 612



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 1/229 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++MA+ +Y+       +     F+ +I +    G +    +    M+  GVKPN++TYN 
Sbjct: 198 IKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNT 257

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +++      +      I+K M D  L P+  TY S +    + R  E+   V  ++ E G
Sbjct: 258 VINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESG 317

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +  +   YN L+  C + G  D+AF  + D   +       +T++ +I       ++ EA
Sbjct: 318 LVPNAVTYNALIDGCCNKGDLDKAFA-YRDEMMNRGIVASVFTYNLLIHALFLEKRIEEA 376

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           E M  EM E G EP++      I  Y +       +   + + E  I P
Sbjct: 377 EDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRP 425



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 91/189 (48%), Gaps = 1/189 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           VYEEM  + +K +++T+N +++ + R  +  + K     M   G+ PN  TY +++  Y 
Sbjct: 204 VYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYC 263

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
                E    +++ MK+K ++     YN+ ++        +EA  +   +  S    P++
Sbjct: 264 LRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLES-GLVPNA 322

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++++I  C  +G + +A A  +EM+  G   ++F    LI      +R ++    +  
Sbjct: 323 VTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKE 382

Query: 323 LPELGITPD 331
           + E G+ PD
Sbjct: 383 MREKGVEPD 391


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 119/223 (53%), Gaps = 8/223 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G +E A  ++D   +    I+PN   + TL+  Y   G  D  L+++ EM   G+KP+ 
Sbjct: 560 VGKMEKALRVFDAMVSAG--IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPST 617

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I Y+ ++D + +A R    K  + EMT++G++ +  TY  +LR   + R  ++ + +++E
Sbjct: 618 ILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKE 677

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++   +++++   NT++         +EA ++F  +  S    P+  T+S MIT     G
Sbjct: 678 LRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSR-LVPNVVTYSIMITNLIKEG 736

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            V EAE MF+ M  AG EPN  +L  +++   +  + +++VRA
Sbjct: 737 LVEEAEDMFSSMQNAGCEPNSRLLNHVVR---ELLKKNEIVRA 776



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 108/213 (50%), Gaps = 3/213 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  A++T+I  +   G+ +   ++++EM   G+ P+++TYN+++  + +A+   + +  
Sbjct: 230 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 289

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            ++M +  + PN  TY +L+  Y      ++ + V++EM+   +   V   + L+     
Sbjct: 290 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 349

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA ++F+ M + +   PD ++++ M+   + +G + +   +F+ ML  G  P+ +
Sbjct: 350 YGKIKEARDVFDTM-AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFY 408

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               LI+ Y      D  +   N + + G+ PD
Sbjct: 409 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 441



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 42/250 (16%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +P+ FS  I L G A    GCL    ++++ M   G+ P+  T+N L+          + 
Sbjct: 369 NPDVFSYNIMLNGYATK--GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 426

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--------------- 220
             I+ EM D+G+ P+  TY +++ A  R    +D +  + +M ++               
Sbjct: 427 MIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG 486

Query: 221 --------------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
                               GM L +  +++++     +G   +A  IF D+  +    P
Sbjct: 487 FCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHP 545

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D+  +S ++      GK+ +A  +F+ M+ AG EPN+ V  +L+  Y K  R D+ +   
Sbjct: 546 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 605

Query: 321 NRLPELGITP 330
             + + GI P
Sbjct: 606 REMLQRGIKP 615



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 120/270 (44%), Gaps = 7/270 (2%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N    +D   FS++I      G      N+++    +G+ P+ + Y+ L+D      +  
Sbjct: 505 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKME 564

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++  M   G+ PN   Y +L+  Y +    ++ LS++REM ++G++ S  LY+ ++
Sbjct: 565 KALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 624

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G T  A   F +M  S     D  T++ ++          EA  +F E+     
Sbjct: 625 DGLFQAGRTVPAKMKFHEMTES-GIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNV 683

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPKEELGK 352
           + N+  L ++I    + +R ++       +    + P+   +   + N++ +   EE   
Sbjct: 684 KINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAED 743

Query: 353 LVECVEKS----NSK-LGYVVKLLLEEQDI 377
           +   ++ +    NS+ L +VV+ LL++ +I
Sbjct: 744 MFSSMQNAGCEPNSRLLNHVVRELLKKNEI 773



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
           LSP  +TYA L+    RA   E  L+ + ++   G+++++ + N LL    +   TDEA 
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF--EPNLFVLTSLI 304
           +I         C PD +++S ++     +GK  +A+ +   M E G    PN+    ++I
Sbjct: 180 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 239

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             + K    +        + + GI PD
Sbjct: 240 DGFFKEGDVNKACDLFKEMVQRGIPPD 266



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 17/240 (7%)

Query: 104 MAFGLYDRA--RNEKWRI---DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +A  L++RA  R +  R+     + ++ L+     A   +  L  + ++   G++ N+I 
Sbjct: 102 LAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIII 161

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 214
            N+LL+    AKR  +   I    T + G  P+  +Y+ LL++    G++   +D L   
Sbjct: 162 ANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL--- 218

Query: 215 REMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TI 271
           R M E G   S  V  YNT++      G  ++A ++F++M       PD  T++S++  +
Sbjct: 219 RMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEM-VQRGIPPDLVTYNSVVHAL 277

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           C  R  + +AEA   +M+     PN +   +LI  Y    +  + VR    +    I PD
Sbjct: 278 CKARA-MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 336



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 2/183 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P   TY  L+D   RA RP      + ++   GL  N      LL  +  A+  ++ L
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 212 SVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMI 269
            +      E G    V  Y+ LL    D G + +A ++   M +    C P+   ++++I
Sbjct: 180 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 239

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G V++A  +F EM++ G  P+L    S++    KA+  D     L ++    + 
Sbjct: 240 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 299

Query: 330 PDD 332
           P++
Sbjct: 300 PNN 302


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 126/238 (52%), Gaps = 9/238 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + GN++ A+ L+D    EK RI P+  A++ +I      G       V+ +M + GV+P+
Sbjct: 92  KLGNIQAAYKLFDEM--EKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPD 149

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE-DTLS-V 213
            +TY  L+D   ++    +  +++ +M  +GL+PN  TY +L  A G  + G+ DT + +
Sbjct: 150 EVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTAL--ADGLCKLGQVDTANEL 207

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             EM  KG+QL++  YN+L+      G   +A ++ E+M+ +    PD+ TF++++    
Sbjct: 208 LHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVA-GMYPDTITFTTLMDAYC 266

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G++ +A  +  EML+ G +P +     L+  +  +   +D  R L  + E GI P+
Sbjct: 267 KTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPN 324



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 98/186 (52%), Gaps = 3/186 (1%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           MK  G  P++++Y+ +++         +V  + +EM   GL PN  TY S++    ++  
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            +D   V REM  +G+     +Y TL+     +G    A+++F++M+  +   PD   ++
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEME-KQRIVPDFIAYT 119

Query: 267 SMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++I  +C C GK+ EA+ +FN+M   G EP+    T+LI  Y K+   +      N++ +
Sbjct: 120 AVICGLCRC-GKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ 178

Query: 326 LGITPD 331
            G+TP+
Sbjct: 179 SGLTPN 184



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 7/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G V+ A  +     N+    D   ++TLI  +   GN      +++EM+   + P+ I
Sbjct: 57  KSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFI 116

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++  + R  +  +   ++ +M   G+ P+  TY +L+  Y ++   E   S++ +M
Sbjct: 117 AYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQM 176

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+  +V  Y  L      +G  D A E+  +M   +  Q +  T++S++      G 
Sbjct: 177 VQSGLTPNVVTYTALADGLCKLGQVDTANELLHEM-CGKGLQLNICTYNSLVNGLCKSGN 235

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITP 330
           + +A  +  EM  AG  P+    T+L+  Y K   T ++V+A   L E+   G+ P
Sbjct: 236 IRQAVKLMEEMEVAGMYPDTITFTTLMDAYCK---TGEMVKAHELLREMLDRGLQP 288



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 104/209 (49%), Gaps = 1/209 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++ST+I  Y   G     L + +EM+  G+KPN+ TYN+++  + ++ +    + + 
Sbjct: 9   DVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVL 68

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM + G+ P+   Y +L+  + +    +    ++ EM+++ +      Y  ++      
Sbjct: 69  REMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRC 128

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA ++F  M  S   +PD  T++++I      G++ +A ++ N+M+++G  PN+  
Sbjct: 129 GKMMEADKVFNKM-FSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVT 187

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGI 328
            T+L     K  + D     L+ +   G+
Sbjct: 188 YTALADGLCKLGQVDTANELLHEMCGKGL 216



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 3/197 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A  L      +  +++   +++L+     +GN    + + EEM+  G+ P+ I
Sbjct: 197 KLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTI 256

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+  L+D   +     +   + +EM D GL P   T+  L+  +  +   ED   +   M
Sbjct: 257 TFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWM 316

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+  + T YN+L+             EI++ M  +    PDS T++ +I    C+ +
Sbjct: 317 LEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGM-CARGVMPDSNTYNILIK-GHCKAR 374

Query: 278 -VSEAEAMFNEMLEAGF 293
            + EA  +  EM E GF
Sbjct: 375 NMKEAWFLHKEMAEKGF 391



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 8/196 (4%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRID----PNA- 123
           KTG   K++  +     R  +    +++       M+  L D  R   W ++    PN  
Sbjct: 267 KTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTT 326

Query: 124 -FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            +++L+K Y    N      +Y+ M A GV P+  TYN L+    +A+   +   ++KEM
Sbjct: 327 TYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEM 386

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            + G +   ++Y S+++ + + +   +   ++ EM+ +GM     +YN  + +    G  
Sbjct: 387 AEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNM 446

Query: 243 DEAFEIFEDMKSSENC 258
           + A E+ ++  + ENC
Sbjct: 447 ETALELCDE--AIENC 460


>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 117/250 (46%), Gaps = 11/250 (4%)

Query: 101 NVEMAF---GLYDRA-----RNEKWRIDP--NAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150
           N+  AF   G  DRA       +K R  P    F  +I  +   G     L+V++ M+  
Sbjct: 561 NIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMS 620

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  P + TYN L+  +   ++  + + I  EMT  G+SPN +TY +++  Y         
Sbjct: 621 GCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKA 680

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
            + + +++++G+QL V  Y  LL  C   G    A  + ++M S++N   +++ ++ +I 
Sbjct: 681 FTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEM-SAQNIPRNTFIYNILID 739

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             + RG + EA  +  +M   G +P++   TS I    KA       + +  +  +G+ P
Sbjct: 740 GWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKP 799

Query: 331 DDRFCGCLLN 340
           + +    L+N
Sbjct: 800 NVKTYTTLIN 809



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 126/271 (46%), Gaps = 7/271 (2%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
            KTG++  +  W      + S L    Y        +  N++ A  L      E      
Sbjct: 392 AKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPI 451

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + + T++  Y   G+ D CL V+E  K  G+ P++ITY  L++   +  +  +   + KE
Sbjct: 452 DIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKE 511

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G+  N  TY+ L+  + + +   +  +++ ++ + G++  V LYN ++     +G 
Sbjct: 512 MEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGK 571

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D A    ++M+   + +P + TF  +I   + +G++ +A  +F+ M  +G  P +    
Sbjct: 572 MDRAVCTVKEMQKQRH-KPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYN 630

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +LI    + ++ +   + L+ +   G++P++
Sbjct: 631 ALILGLVEKRKMEKAEQILDEMTLAGVSPNE 661



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           N+   ++ +E +K    KP+   Y  +++   R     + +  +++M   G+ P+ + Y 
Sbjct: 295 NWQAVVSAFERIK----KPSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYT 350

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +L+ AY   R  E+ LS  R+MKE+G+++S+  Y+ L++  A  G  + A   F++ K  
Sbjct: 351 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAK-E 409

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           ++   ++  + ++I     R  + +AEA+  EM E G +  + +  +++  Y      D 
Sbjct: 410 KHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDK 469

Query: 316 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
            +    R  E G+ P     GCL+N+  +     LGK+ + +E S
Sbjct: 470 CLLVFERFKECGLNPSVITYGCLINLYAK-----LGKVSKALEVS 509



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 113/251 (45%), Gaps = 9/251 (3%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           +Y TR G++  A   +++ R        + ++ LI  Y    + +  L+   +MK  G++
Sbjct: 319 NYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE 378

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
            +++TY+ L+    +          ++E  +   S N   Y +++ AY +    +   ++
Sbjct: 379 MSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEAL 438

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            REM+E+G+   + +Y+T++     VG  D+   +FE  K      P   T+  +I + +
Sbjct: 439 VREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKEC-GLNPSVITYGCLINLYA 497

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-- 331
             GKVS+A  +  EM  AG + N+   + LI  + K +   +       L + GI PD  
Sbjct: 498 KLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVV 557

Query: 332 ------DRFCG 336
                   FCG
Sbjct: 558 LYNNIITAFCG 568



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 8/230 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+   AF  + + R+E  ++D   +  L+K    +G     L V +EM A  +  N   Y
Sbjct: 675 GDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIY 734

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   R    W+   + ++M   G+ P+ +TY S + A  +A   +       EMK 
Sbjct: 735 NILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKS 794

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++ +V  Y TL+   A     ++A   FE+MK S   +PD   +  ++T    R  V+
Sbjct: 795 VGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLS-GLKPDRAVYHCLMTSLLSRATVA 853

Query: 280 EA------EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT-DDVVRALNR 322
                    ++  EM++     ++       +C  K +RT  ++  AL +
Sbjct: 854 HGCIYPGILSVCREMVDCELTVDMGTAVHWSKCLLKIERTGGEITEALQK 903



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 5/229 (2%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +++    +  + D   ++ +I  +   G  D  +   +EM+    KP   T+  ++ 
Sbjct: 540 AFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIH 599

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R     +   ++  M  +G  P  +TY +L+      R  E    +  EM   G+  
Sbjct: 600 GFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSP 659

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y T++   A +G T +AF  F  ++  E  Q D +T+ +++  C   G++  A A+
Sbjct: 660 NEHTYTTIMHGYASLGDTGKAFTYFTKLR-DEGLQLDVYTYEALLKACCKSGRMQSALAV 718

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTD--DVVRALNRLPELGITPD 331
             EM       N F+   LI   G A+R D  +    + ++   G+ PD
Sbjct: 719 TKEMSAQNIPRNTFIYNILID--GWARRGDIWEAADLMQQMKREGVQPD 765



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 104/246 (42%), Gaps = 10/246 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN E A   +  A+ +   ++   +  +I  Y    N D    +  EM+  G+   + 
Sbjct: 393 KTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPID 452

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+ ++D         +   +++   + GL+P+  TY  L+  Y +       L V +EM
Sbjct: 453 IYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEM 512

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G++ ++  Y+ L+     +     AF IFED+   +  +PD   ++++IT     GK
Sbjct: 513 EHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDL-IKDGIKPDVVLYNNIITAFCGMGK 571

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A     EM +   +P       +I  +    R  ++ +AL+    +      R  GC
Sbjct: 572 MDRAVCTVKEMQKQRHKPTTRTFMPIIHGFA---RKGEMKKALDVFDMM------RMSGC 622

Query: 338 LLNVMT 343
           +  V T
Sbjct: 623 IPTVHT 628



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 6/126 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G++  A  L  + + E  + D + +++ I     AG+        EEMK++GVKPN+ 
Sbjct: 743 RRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVK 802

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGE-----DTL 211
           TY  L++   RA  P +  + ++EM  +GL P+   Y  L+ +   RA           L
Sbjct: 803 TYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGIL 862

Query: 212 SVYREM 217
           SV REM
Sbjct: 863 SVCREM 868


>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hermannioides]
          Length = 382

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 138 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 197

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 198 KANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMI 257

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 258 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 312

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              + V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 313 VKXITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 359



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLT 83

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 84  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 143

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 144 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 203

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 204 QEMQ-SRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 262

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 263 AGLVAHAKRLLHELKRPDNIPRD 285



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 36/247 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI+L     ++   ++++  +K  G  P+++ YN +++  G+AK   + +++ 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
            EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E                    
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVT 182

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++SM+ I     +  +A  +  EM   G EPN    +++I  +GK  + D       +L 
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLR 242

Query: 325 ELGITPD 331
             G+  D
Sbjct: 243 SSGVEID 249



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            +S++  +K  G    +  YN ++ +        EA  +  +MK++    P++ ++S+++
Sbjct: 24  AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTA-GVMPNTTSYSTLL 82

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           T+     K  EA ++F+EM E     +L     +I  YG+     +  +    + ++GI 
Sbjct: 83  TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 142

Query: 330 PDDRFCGCLLNV 341
           P+      LL V
Sbjct: 143 PNVVSYNTLLRV 154



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           + LY+ L+ +   +    +A  IF  +K S    PD   +++MI +        EA ++ 
Sbjct: 5   LVLYSNLIELSRKLCDYSKAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +EM  AG  PN    ++L+  Y + ++  + +   + + E+    D   C  +++V  Q
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G    + 
Sbjct: 262 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKXIT 317

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 318 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 377

Query: 218 KEKG 221
           +E G
Sbjct: 378 QEVG 381


>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Glycine max]
          Length = 752

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +Y+        +D + +  +I     +G  D    +++EMK  G +P +  + +L+D
Sbjct: 213 AFEMYESMEKAGCSLDGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVD 272

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           +MG+A R      +Y EM   G  P    Y SL+ +Y ++   E  L ++ EM+  G + 
Sbjct: 273 SMGKAGRLDSAMKVYMEMRGYGYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRP 332

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +  LY  ++   A  G  + A   F DM+ +    P   T++ ++ + +  G++  A  +
Sbjct: 333 NFGLYTLIIESHAKSGKLEIAMSTFLDMEKA-GFLPTPSTYACLLEMHAASGQIDPAMKL 391

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +N M  AG  P L   T L+      +  D   + L  +  +G + D
Sbjct: 392 YNSMTNAGLRPGLSTYTVLLTLLANKKLVDVAAKILLEMKAMGYSVD 438



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 95/460 (20%), Positives = 192/460 (41%), Gaps = 56/460 (12%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G ++ AF L+   +   +R   N F++L+   G AG  D  + VY EM+  G KP  
Sbjct: 240 AKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGYKPPP 299

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             Y +L+++  ++ +      ++ EM   G  PN+  Y  ++ ++ ++   E  +S + +
Sbjct: 300 TIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAMSTFLD 359

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G   + + Y  LL M A  G  D A +++  M ++   +P   T++ ++T+ + + 
Sbjct: 360 MEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSM-TNAGLRPGLSTYTVLLTLLANKK 418

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD---- 332
            V  A  +  EM   G+  ++   + ++  Y K    D  +R L  +   GI  ++    
Sbjct: 419 LVDVAAKILLEMKAMGYSVDV-TASDILMVYIKEGSVDLALRWLRFMGSSGIRTNNFIIR 477

Query: 333 -RFCGCLLNVMTQTPK-------------------EELGKLVECVEKSNSKLGYVVKLLL 372
             F  C+ + + ++ K                     L  LV C E+ N +  +++ +L 
Sbjct: 478 QLFESCMKSGLFESAKPLLETYVNSAAKVDLILYTSILAHLVRCQEEKNER--HLMSILS 535

Query: 373 EEQDIEGDFK---------------KEATELFNSISKDVK----KAYCNCLIDLCVNLNL 413
             +     F                    E F  I  +++    K + N L++  V +  
Sbjct: 536 ATKHKAHSFMCGLFTGPEHRGQPVLTFVREFFQGIDYELEEGAAKYFVNVLLNYLVLMGQ 595

Query: 414 LENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGE 472
           +  A  + ++    +++   I       WSL +++LS+GAAL A+   ++   K +    
Sbjct: 596 INRARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYG 655

Query: 473 EFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDS 512
             P  + + TG          L  V    L  + +PF  S
Sbjct: 656 IVPRRIKLVTG--------ATLKIVIAQMLSSVESPFEVS 687



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 146/339 (43%), Gaps = 20/339 (5%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  +A  +E++F  + +  N   ++D   +++LI L+   G       +YE M+  G   
Sbjct: 168 YLAKAEKLEVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEKAGCSL 227

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  TY  ++  + ++ R      +++EM   G  P  N +ASL+ + G+A   +  + VY
Sbjct: 228 DGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVY 287

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM+  G +   T+Y +L+      G  + A  ++++M+ +   +P+   ++ +I   + 
Sbjct: 288 MEMRGYGYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMA-GFRPNFGLYTLIIESHAK 346

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            GK+  A + F +M +AGF P       L++ +  + + D  ++  N +   G+ P    
Sbjct: 347 SGKLEIAMSTFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLST 406

Query: 335 CGCLLNVMTQTPKEELGKLVECVEK---SNSKLGYVVKLLLEEQDIEGDFKKEAT----- 386
              LL ++         KLV+   K       +GY V   +   DI   + KE +     
Sbjct: 407 YTVLLTLLANK------KLVDVAAKILLEMKAMGYSVD--VTASDILMVYIKEGSVDLAL 458

Query: 387 ---ELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
                  S            L + C+   L E+A  LLE
Sbjct: 459 RWLRFMGSSGIRTNNFIIRQLFESCMKSGLFESAKPLLE 497



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 101/219 (46%), Gaps = 1/219 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A + +I+    A   +     ++++   G K +  TYN+L+        P++   +Y+ M
Sbjct: 161 ACNRVIRYLAKAEKLEVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESM 220

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G S + +TY  ++    ++   +    +++EMK +G +  + ++ +L+      G  
Sbjct: 221 EKAGCSLDGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRL 280

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A +++ +M+     +P    + S+I      GK+  A  +++EM  AGF PN  + T 
Sbjct: 281 DSAMKVYMEMRGY-GYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTL 339

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           +I+ + K+ + +  +     + + G  P      CLL +
Sbjct: 340 IIESHAKSGKLEIAMSTFLDMEKAGFLPTPSTYACLLEM 378


>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 1/172 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+ LIK YG AG ++   +V E MK     P ++TYN +++T GRA     +   +
Sbjct: 304 DIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYF 363

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           K M   G+ PN  TY SL+ AY +A       S+ R+++   + L  T +N ++      
Sbjct: 364 KTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQA 423

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           G  D+  E+F +M+  E C PD+ TF++MI     +G    A+A+   ML A
Sbjct: 424 GDVDKMAELFLEMRERE-CMPDNVTFATMIQAYRGQGMTEAAQALEKMMLAA 474



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 76/146 (52%)

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           P   TY  LL   G+ R  E+   ++  M+ +G++ ++ +Y  L++   + G   +AF  
Sbjct: 126 PRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFST 185

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
            ++MKS  +C+PD +T+S +I IC+   +      + +EM   G E +     ++I  YG
Sbjct: 186 VDEMKSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYG 245

Query: 309 KAQRTDDVVRALNRLPELGITPDDRF 334
           KA+   ++  +L  + E+G +  D F
Sbjct: 246 KAKMFREMENSLTNMIEIGNSVPDLF 271



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 2/210 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           F+T+I  YG A  F    N    M  IG   P++ T+N+++   G + R  +++  Y E 
Sbjct: 237 FNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEF 296

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G+SP+  T+  L+++YG+A   E   SV   MK++    +V  YN ++      G  
Sbjct: 297 QLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDI 356

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           +   E F+ MK     +P++ T+ S+++  S  G + +  ++  ++  +    +      
Sbjct: 357 ENMDEYFKTMKHL-GMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNC 415

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +I  YG+A   D +      + E    PD+
Sbjct: 416 IINAYGQAGDVDKMAELFLEMRERECMPDN 445



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 2/226 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S LI +      FD    +  EM  +GV+ + +T+N +++  G+AK   +++   
Sbjct: 198 DVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMFREMENSL 257

Query: 180 KEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             M + G S P+  T+ S++ AYG +   E     Y E +  G+   +  +N L+     
Sbjct: 258 TNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGK 317

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  ++   + E MK      P   T++ +I      G +   +  F  M   G +PN  
Sbjct: 318 AGMYEKINSVIEFMKK-RFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAI 376

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
              SL+  Y KA     V   L ++    +  D  F  C++N   Q
Sbjct: 377 TYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQ 422


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A G  D+            +++LI  Y   GN       ++EM   G+ P ++
Sbjct: 239 RRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVV 298

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY +L+          +   +Y EMT  G+SPN  T+ +++    RA    + + ++ EM
Sbjct: 299 TYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEM 358

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+ +  S   YN ++      G   EAF + ++M   +   PD++T+  +I+     G+
Sbjct: 359 KERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEM-VGKGFVPDTYTYRPLISGLCSVGR 417

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           VSEA+   +++ +   + N    ++L+  Y K  R  D V A   + E G+  D
Sbjct: 418 VSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMD 471



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 7/213 (3%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           + +DTRA      FGL     N   R D   ++ +I  +  AGN      +++ M   G 
Sbjct: 484 REHDTRA-----LFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGC 538

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            PN++TY  L++ + +A    + + + KE   + ++PN  TY   L    R    E  + 
Sbjct: 539 LPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQ 598

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           ++  M  KG   +   YN L+     +G  +EA ++   M +  +  PD  T+S++I   
Sbjct: 599 LHHAML-KGFLATTVSYNILIRGFCRLGKIEEATKLLHGM-TDNDILPDYITYSTIIYEQ 656

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             R  + EA  +++ ML+ G +P+    + L+ 
Sbjct: 657 CKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVH 689



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +S LI  +   G  D  +   ++M    ++  +  YN+L++   +       K  + EM 
Sbjct: 230 YSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMI 289

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           D GL+P   TY SL+  Y           VY EM  KG+  +   +  +++         
Sbjct: 290 DKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMA 349

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           EA  +F +MK  +   P   T++ MI    CR G +SEA  + +EM+  GF P+ +    
Sbjct: 350 EAIRLFGEMKERK-IMPSEVTYNVMIE-GHCRSGNISEAFHLLDEMVGKGFVPDTYTYRP 407

Query: 303 LI 304
           LI
Sbjct: 408 LI 409



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN   A   +D   ++        +++LI  Y   G +     VY EM A G+ PN  
Sbjct: 274 KLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTY 333

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+  ++  + RA    +   ++ EM +  + P+  TY  ++  + R+    +   +  EM
Sbjct: 334 TFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEM 393

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG       Y  L++    VG   EA E  +D+    + + ++  +S+++      G+
Sbjct: 394 VGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHH-KLNNMCYSALVHGYCKEGR 452

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +A +    M+E G   +L     LI    +   T  +   L  +   G+ PD
Sbjct: 453 FKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPD 506



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 107/251 (42%), Gaps = 27/251 (10%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+D   +   + D   +S +++      +F+    +   M+    K +++ YN L+  + 
Sbjct: 118 LFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLC 177

Query: 168 RAKRPWQVKTI--------------------------YKEMTDNGLSPNWNTYASLLRAY 201
           +++R W+   I                          +KEM + GL  N  TY+ L+ ++
Sbjct: 178 KSRRIWEALEIKNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSF 237

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            R    ++ +    +M +  ++ +V  YN+L+     +G    A   F++M   +   P 
Sbjct: 238 CRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEM-IDKGLTPT 296

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             T++S+I+     G+  +A  ++NEM   G  PN +  T++I    +A    + +R   
Sbjct: 297 VVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFG 356

Query: 322 RLPELGITPDD 332
            + E  I P +
Sbjct: 357 EMKERKIMPSE 367



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 36/247 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+GN+  AF L D                                   EM   G  P+  
Sbjct: 379 RSGNISEAFHLLD-----------------------------------EMVGKGFVPDTY 403

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +    R  + K    ++  +    N   Y++L+  Y +    +D +S  R M
Sbjct: 404 TYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVM 463

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E+G+ + +  Y  L+   A    T   F + ++M  +   +PD+  +++MI   S  G 
Sbjct: 464 VERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMH-NHGLRPDAVIYTNMIDRHSKAGN 522

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA  +++ M++ G  PN+   T+LI    KA   D             +TP+    GC
Sbjct: 523 LKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGC 582

Query: 338 LLNVMTQ 344
            L+ +T+
Sbjct: 583 FLDHLTR 589



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 99/233 (42%), Gaps = 2/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G V  A    D    +  +++   +S L+  Y   G F   ++    M   GV  +++ 
Sbjct: 415 VGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVC 474

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+D   R      +  + KEM ++GL P+   Y +++  + +A   ++   ++  M 
Sbjct: 475 YAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMV 534

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           ++G   +V  Y  L+      G  D+A E+        +  P+  T+   +   +  G +
Sbjct: 535 DEGCLPNVVTYTALINGLCKAGLMDKA-ELLSKETLVSDVTPNHITYGCFLDHLTRGGNM 593

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +A  + + ML+ GF         LI+ + +  + ++  + L+ + +  I PD
Sbjct: 594 EKAVQLHHAMLK-GFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPD 645



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 34/190 (17%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AGN++ AFGL+D   +E    +   ++ LI     AG  D    + +E     V PN 
Sbjct: 518 SKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNH 577

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEM---------------------------------- 182
           ITY   LD + R     +   ++  M                                  
Sbjct: 578 ITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNILIRGFCRLGKIEEATKLLHGM 637

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           TDN + P++ TY++++    +    ++ + ++  M +KG++     Y+ L+  C   G  
Sbjct: 638 TDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGEL 697

Query: 243 DEAFEIFEDM 252
           ++AFE+ ++M
Sbjct: 698 EKAFELRDEM 707



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 10/188 (5%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           LN    MK   + P + T + LL+ + R +R   V  ++ ++    + P+   Y++++R+
Sbjct: 81  LNDSRLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRS 140

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
               +       +   M+    +LS+ +YN L+          EA EI       +NC  
Sbjct: 141 LCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEI-------KNCLM 193

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
                ++++T     GK +EAE +F EM E G   N    + LI  + +    D+ +  L
Sbjct: 194 QKGLEANVVTY---YGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFL 250

Query: 321 NRLPELGI 328
           +++ +  I
Sbjct: 251 DKMTKASI 258


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 109/229 (47%), Gaps = 1/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
            MA  ++D  R ++ + +   F+ L+      G  +    ++E+M+  G +P++  YN L
Sbjct: 277 HMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNAL 336

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +++  RA  P+    I+  M   G  P+  +Y  ++ AYGRA   ED  +V+ EMK  G+
Sbjct: 337 MESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGI 396

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
             ++  +  LL+  +  G   +  +I   M  S   +PD++  +SM+ +    G+  + E
Sbjct: 397 TPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKS-GLKPDTFVMNSMLNLYGRLGQFGKME 455

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +F+ M +     ++     LI  YG+A   + +      LP   + PD
Sbjct: 456 DLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPD 504



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 105/213 (49%), Gaps = 1/213 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + GN   A  ++ R + +  +   + ++ LI +YG         N+++EM+    KPN+
Sbjct: 236 VKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNI 295

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T+  L++ + R     + + I+++M + G  P+   Y +L+ +Y RA +      ++  
Sbjct: 296 CTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSL 355

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+  G +     YN ++      G  ++A  +FE+MK      P   +   +++  S  G
Sbjct: 356 MQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRI-GITPTMKSHMLLLSAYSSAG 414

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
            V++ E +  +M ++G +P+ FV+ S++  YG+
Sbjct: 415 NVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGR 447



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 1/209 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L+K Y  +G  +    V+ EM+  G+ P+ I YN  +D + +     +   I+  
Sbjct: 191 DTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHR 250

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +G  P  +TY  L+  YG+        +++ EM+ +  + ++  +  L+   A  G 
Sbjct: 251 MKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGL 310

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            ++A EIFE M+ +   +PD + +++++   S  G    A  +F+ M   G EP+     
Sbjct: 311 CEKAEEIFEQMQEA-GYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYN 369

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITP 330
            ++  YG+A   +D       +  +GITP
Sbjct: 370 IMVDAYGRAGLHEDAQAVFEEMKRIGITP 398



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 34/213 (15%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P++I YN L+D  G+      V++ Y E+ ++   P  +TYA LL+AY ++   E   +
Sbjct: 152 RPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGLLEKAEA 211

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK------------------- 253
           V+ EM++ G+  S  +YN  +      G   +A EIF  MK                   
Sbjct: 212 VFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYG 271

Query: 254 ---------------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
                           ++ C+P+  TF++++   +  G   +AE +F +M EAG+EP+++
Sbjct: 272 KESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVY 331

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +L++ Y +A          + +  +G  PD
Sbjct: 332 AYNALMESYSRAGFPYGAAEIFSLMQHMGCEPD 364



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 121/264 (45%), Gaps = 2/264 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G  E A  ++++ +   +  D  A++ L++ Y  AG   G   ++  M+ +G +P+ 
Sbjct: 306 AREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDR 365

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN ++D  GRA      + +++EM   G++P   ++  LL AY  A        +  +
Sbjct: 366 ASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQ 425

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M + G++    + N++L +   +G   +  ++F  M+    C+ D  T++ +I +    G
Sbjct: 426 MHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGP-CRADISTYNILINVYGRAG 484

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V   E +F  +     EP++   TS I  Y + +     +    ++ + G  PD     
Sbjct: 485 FVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAK 544

Query: 337 CLLNVMTQTPK-EELGKLVECVEK 359
            LL+  +   + E++  +V  + K
Sbjct: 545 VLLSACSSEEQIEQVTNVVRTMHK 568


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y   G  +G  + + +MK+  +KP+ ITYN L++ + +A+R    + +  EM 
Sbjct: 374 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 433

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           DNG++P   T+ +L+ AYGR    E    V  EM+E G++ +V  Y +++      G   
Sbjct: 434 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 493

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  I +DM   ++  P++  ++++I      G   +A  +  +M   G  P++     L
Sbjct: 494 EAVAILDDM-FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLL 552

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I+      +  +    +N L    + PD
Sbjct: 553 IKGLCNQSQISEAEEIINSLSNHRLIPD 580



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+TLI  YG  G  + C  V  EM+  G+KPN+++Y ++++   +  +  +   I  +M 
Sbjct: 444 FNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMF 503

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
              + PN   Y +++ AY      +    +  +MK  G+  S+  YN L+    +     
Sbjct: 504 HKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQIS 563

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA EI   + S+    PD+ +++++I+ C  RG + +A  +   M + G +  +     L
Sbjct: 564 EAEEIINSL-SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 622

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           I   G A R  ++     ++ +  + P +     + N+M + 
Sbjct: 623 ISGLGGAGRLIEMEYLYQKMMQNNVVPSN----AIHNIMVEA 660



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E AF  + + ++   + D   ++ LI     A       ++  EM+  GV P + 
Sbjct: 383 QTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 442

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+D  GR  +  +   +  EM +NGL PN  +Y S++ A+ +     + +++  +M
Sbjct: 443 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM 502

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             K +  +  +YN ++    + G  D+AF + E MKS+    P   T++ +I     + +
Sbjct: 503 FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN-GISPSIVTYNLLIKGLCNQSQ 561

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +SEAE + N +      P+     +LI         D  +    R+ + GI
Sbjct: 562 ISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGI 612



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 121/295 (41%), Gaps = 41/295 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A  ++D         +   ++T+I  +   G+ +   ++ ++M   G+KPN I
Sbjct: 208 RAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAI 267

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY--- 214
           TYN LL  + RA R  +   +  EM    + P+  TY+ L     R    +  LS++   
Sbjct: 268 TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKS 327

Query: 215 --------------------------------REMKEKGMQLSVTLYNTLLAMCADVGYT 242
                                           + +   G+  +  +YNTL+      G  
Sbjct: 328 LKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 387

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           + AF  F  MK S + +PD  T++++I       +++ A+ +  EM + G  P +    +
Sbjct: 388 EGAFSTFGQMK-SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNT 446

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
           LI  YG+  + +     L+ + E G+ P+    G ++N   +      GK+ E V
Sbjct: 447 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN-----GKIPEAV 496



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 40/286 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NM 156
           R  +V  AFG+   A     R D  A++  ++    AG+    + +   M   G  P N 
Sbjct: 140 RHADVRRAFGILASA---GARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNA 196

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN ++  M RA R      ++ EMT+  + PN  TY +++  + +    E   S+  +
Sbjct: 197 FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQ 256

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-------- 268
           M   G++ +   YN LL+     G   E   + ++M +S+   PD +T+S +        
Sbjct: 257 MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM-ASQKMVPDGFTYSILFDGLSRNG 315

Query: 269 ----------------ITI----CS------CR-GKVSEAEAMFNEMLEAGFEPNLFVLT 301
                           +TI    CS      C+ GKVS AE +   ++ AG  P   +  
Sbjct: 316 DSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYN 375

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           +LI  Y +    +       ++    I PD      L+N + +  +
Sbjct: 376 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 421



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N +   D  +++TLI      GN D  L++ + M   G+K  + TY+ L+  +G A R  
Sbjct: 574 NHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLI 633

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEK 220
           +++ +Y++M  N + P+   +  ++ AY  ++YG +  +  + +EM +K
Sbjct: 634 EMEYLYQKMMQNNVVPSNAIHNIMVEAY--SKYGNEIKAEDLRKEMLQK 680


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 9/247 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G +  A  ++D  ++   R    +F+T+I     AG+ DG   ++  M   GV P++
Sbjct: 251 VRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDV 310

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  L+  + R  R    + ++++M   G+ PN   +  L+ A+ +    E  L ++RE
Sbjct: 311 YTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHRE 370

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+E+G++     YN ++           A  I  +M+S+   +PD+ T++++I       
Sbjct: 371 MRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSA-GLRPDTVTYTTLIDGYCKEE 429

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----- 331
           ++  A  +   M+  G   +    T+LI    KA R+ D  R L  + E G+ PD     
Sbjct: 430 ELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYT 489

Query: 332 ---DRFC 335
              D FC
Sbjct: 490 MVIDAFC 496



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 113/235 (48%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +E A G++++      + +   F+ LI  +   G+ +  L ++ EM+  GV+P+ +
Sbjct: 322 RVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAV 381

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN +++ + RA+       I  EM   GL P+  TY +L+  Y +    +  + + + M
Sbjct: 382 TYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNM 441

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+ L    Y  L++  +  G + +A  +  +M  +   +PD+ T++ +I     +G 
Sbjct: 442 VAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA-GLEPDNTTYTMVIDAFCRKGD 500

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           V     +  EM   G +P +     ++  + K  +  +    LN +  +G++PDD
Sbjct: 501 VKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDD 555



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 149/316 (47%), Gaps = 11/316 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ L++     G      NV++EM++ GV+  ++++N ++  M RA      +T+++ M+
Sbjct: 243 FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMS 302

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G++P+  TY +L++   R    ED   V+ +M  +GM+ +  ++  L+      G  +
Sbjct: 303 EAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAE 362

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
              E+  +M+     +PD+ T+++++  +C  R  +  A  +  EM  AG  P+    T+
Sbjct: 363 TMLELHREMR-ERGVRPDAVTYNAIVNGLCRAR-DLKSASGIVVEMRSAGLRPDTVTYTT 420

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVEC- 356
           LI  Y K +  D  +     +   G+  D+     L++ +++  +       LG+++E  
Sbjct: 421 LIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAG 480

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLEN 416
           +E  N+    V+     + D++   +    E+ N   K     Y N +++    L  ++N
Sbjct: 481 LEPDNTTYTMVIDAFCRKGDVKTGLRL-LKEMQNKGRKPGVVTY-NVIMNGFCKLGQMKN 538

Query: 417 ACKLLELGLTLEVYTD 432
           A  LL   + + V  D
Sbjct: 539 ADMLLNAMINIGVSPD 554



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 4/207 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA +++ A G+    R+   R D   ++TLI  Y      D  + + + M A GV  + +
Sbjct: 392 RARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEV 451

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  + +A R    + +  EM + GL P+  TY  ++ A+ R    +  L + +EM
Sbjct: 452 TYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEM 511

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + KG +  V  YN ++     +G    A  +   M +     PD  T++ ++      GK
Sbjct: 512 QNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINI-GVSPDDITYNILLDGHCKHGK 570

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           V++ E + +     G  P+L V TS++
Sbjct: 571 VTDIEELKS---AKGTVPDLGVYTSIV 594



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 1/153 (0%)

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y ++ D GL P    +  L+R   R        +V+ EM+ +G++ +V  +NT+++    
Sbjct: 228 YLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCR 287

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D A  +   M S     PD +T+ ++I      G++ +A  +F +M   G +PN  
Sbjct: 288 AGDLDGAETLHRRM-SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAV 346

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V T LI  + K    + ++     + E G+ PD
Sbjct: 347 VFTILIDAHCKKGDAETMLELHREMRERGVRPD 379



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
           + Y ++ + G+     L+N L+     +G    A  +F++M+ S   +    +F++MI+ 
Sbjct: 226 AFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQ-SRGVRRTVVSFNTMISG 284

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G +  AE +   M EAG  P+++   +LIQ   +  R +D      ++   G+ P+
Sbjct: 285 MCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPN 344


>gi|48716454|dbj|BAD23061.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           [Oryza sativa Japonica Group]
          Length = 580

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG+  +A  L  R       +D  +F+T+I LY   G     + V E M+  GVK +++
Sbjct: 192 KAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVV 251

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N+L+  + + +R  +   + +EM   G++P+  TY +L+  Y RA   E+ + +  EM
Sbjct: 252 TWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEM 311

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  GM   V  YN +L    + G   E   +  +M      Q D  T +++I     RG 
Sbjct: 312 EAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEM-DERKVQADHVTCNTLINAYCKRGD 370

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++ A  +   M+E+G + + F   +L+  + KA+  D+   AL  +   G +P+
Sbjct: 371 MTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPN 424



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 3/191 (1%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L V++ M+A  V P+    + LL  + +++     + ++ +MT  G++ N + Y ++L  
Sbjct: 130 LRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHV 189

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
             +A       S+   M   G+ L    +NT++A+    G   EA  + E M+ ++  + 
Sbjct: 190 CLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERME-NQGVKA 248

Query: 261 DSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           D  T++S+I  +C  R +V EA  +  EM  AG  P+    T+L+  Y +A   ++ V+ 
Sbjct: 249 DVVTWNSLIHGLCKER-RVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKL 307

Query: 320 LNRLPELGITP 330
              +  +G+ P
Sbjct: 308 RGEMEAMGMLP 318



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 100/254 (39%), Gaps = 36/254 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TL+  Y  AG+ +  + +  EM+A+G+ P + TYN +L  +    +  +V  + 
Sbjct: 284 DHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLL 343

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM +  +  +  T  +L+ AY +       L V R M E G+QL    Y  L+      
Sbjct: 344 NEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKA 403

Query: 240 GYTDEAFE-IFEDMKSS---------------------------------ENCQPDSWTF 265
              DEA E +FE M +                                      PD   +
Sbjct: 404 KELDEAKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVY 463

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP- 324
            S+I     +G +  A  +FNEM   G E +  V  +L   Y  A +    +  LN +  
Sbjct: 464 RSLIRRLCKKGFIDLAGNVFNEMQGKGLEADCLVYATLACAYLTAGKPVAALDILNEMAK 523

Query: 325 -ELGITPDDRFCGC 337
            +L ITP    C C
Sbjct: 524 KQLYITPQIYNCMC 537



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D+       ++ + ++ ++ +   AG+     ++   M A GV  +  ++N ++    
Sbjct: 167 VFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYC 226

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R    ++   + + M + G+  +  T+ SL+    + R  ++   + REM   G+     
Sbjct: 227 RKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHV 286

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y TL+      G  +EA ++  +M++     P   T+++++      GK+ E   + NE
Sbjct: 287 TYTTLVDGYCRAGDLEEAVKLRGEMEAM-GMLPGVATYNAILRKLCEDGKMKEVNVLLNE 345

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M E   + +     +LI  Y K       ++   R+ E G+  D
Sbjct: 346 MDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLD 389



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 1/181 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L +     K + D    +TLI  Y   G+    L V   M   G++ +  TY  L+    
Sbjct: 342 LLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFC 401

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +AK   + K    EM   G SPN++  + ++            L++  E+ ++G      
Sbjct: 402 KAKELDEAKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKA 461

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +Y +L+      G+ D A  +F +M+  +  + D   ++++       GK   A  + NE
Sbjct: 462 VYRSLIRRLCKKGFIDLAGNVFNEMQ-GKGLEADCLVYATLACAYLTAGKPVAALDILNE 520

Query: 288 M 288
           M
Sbjct: 521 M 521



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 61/157 (38%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G++  A  +  R      ++D   +  L+  +  A   D       EM   G  PN    
Sbjct: 369 GDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSVL 428

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + ++D +        V  I  E+   G  P+   Y SL+R   +  + +   +V+ EM+ 
Sbjct: 429 SWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQG 488

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           KG++    +Y TL       G    A +I  +M   +
Sbjct: 489 KGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQ 525


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 118/223 (52%), Gaps = 8/223 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G +E A  ++D   +    I+PN   + TL+  Y   G  D  L+++ EM   G+KP+ 
Sbjct: 547 VGKMEKALRVFDAMVSAG--IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPST 604

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I Y+ ++D + +A R    K  + EMT++G++ +  TY  +LR   + R  ++ + +++E
Sbjct: 605 ILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKE 664

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++   +++++   NT++         +EA ++F  +  S    P   T+S MIT     G
Sbjct: 665 LRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSR-LVPSVVTYSIMITNLIKEG 723

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            V EAE MF+ M  AG EPN  +L  +++   +  + +++VRA
Sbjct: 724 LVEEAEDMFSSMQNAGCEPNSRLLNHVVR---ELLKKNEIVRA 763



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 144/309 (46%), Gaps = 22/309 (7%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  A++T+I  +   G+ +   ++++EM   G+ P+++TYN+++  + +A+   + +  
Sbjct: 217 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 276

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            ++M +  + PN  TY +L+  Y      ++ + V++EM+   +   V   + L+     
Sbjct: 277 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA ++F+ M + +   PD ++++ M+   + +G + +   +F+ ML  G  P+ +
Sbjct: 337 YGKIKEARDVFDTM-AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFY 395

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
               LI+ Y      D  +   N + + G+ PD      ++  + +     +GK+ + +E
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR-----IGKMDDAME 450

Query: 359 KSNSKLG-------YVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNL 411
           K N  +        Y    L++     G   K A EL + I  +         +D+    
Sbjct: 451 KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLK-AKELISEIMNNGMH------LDIVFFS 503

Query: 412 NLLENACKL 420
           +++ N CKL
Sbjct: 504 SIINNLCKL 512



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 42/250 (16%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +P+ FS  I L G A    GCL    ++++ M   G+ P+  T+N L+          + 
Sbjct: 356 NPDVFSYNIMLNGYATK--GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 413

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--------------- 220
             I+ EM D+G+ P+  TY +++ A  R    +D +  + +M ++               
Sbjct: 414 MIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG 473

Query: 221 --------------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
                               GM L +  +++++     +G   +A  IF D+  +    P
Sbjct: 474 FCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHP 532

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D+  +S ++      GK+ +A  +F+ M+ AG EPN+ V  +L+  Y K  R D+ +   
Sbjct: 533 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 592

Query: 321 NRLPELGITP 330
             + + GI P
Sbjct: 593 REMLQRGIKP 602



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 90/202 (44%), Gaps = 1/202 (0%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N    +D   FS++I      G      N+++    +G+ P+ + Y+ L+D      +  
Sbjct: 492 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKME 551

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++  M   G+ PN   Y +L+  Y +    ++ LS++REM ++G++ S  LY+ ++
Sbjct: 552 KALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 611

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G T  A   F +M  S     D  T++ ++          EA  +F E+     
Sbjct: 612 DGLFQAGRTVPAKVKFHEMTES-GIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNV 670

Query: 294 EPNLFVLTSLIQCYGKAQRTDD 315
           + N+  L ++I    + +R ++
Sbjct: 671 KINIITLNTMIDGMFQTRRVEE 692



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
           LSP  +TYA L+    RA   E  L+ + ++   G+++++ + N LL    +   TDEA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF--EPNLFVLTSLI 304
           +I         C PD +++S ++     +GK  +A+ +   M E G    PN+    ++I
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 226

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             + K    +        + + GI PD
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPD 253



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 17/240 (7%)

Query: 104 MAFGLYDRA--RNEKWRI---DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +A  L++RA  R +  R+     + ++ L+     A   +  L  + ++   G++ N+I 
Sbjct: 89  LAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIII 148

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 214
            N+LL+    AKR  +   I    T + G  P+  +Y+ LL++    G++   +D L   
Sbjct: 149 ANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL--- 205

Query: 215 REMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TI 271
           R M E G   S  V  YNT++      G  ++A ++F++M       PD  T++S++  +
Sbjct: 206 RMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEM-VQRGIPPDLVTYNSVVHAL 264

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           C  R  + +AEA   +M+     PN +   +LI  Y    +  + VR    +    I PD
Sbjct: 265 CKARA-MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 323



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 2/183 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P   TY  L+D   RA RP      + ++   GL  N      LL  +  A+  ++ L
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 212 SVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMI 269
            +      E G    V  Y+ LL    D G + +A ++   M +    C P+   ++++I
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 226

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G V++A  +F EM++ G  P+L    S++    KA+  D     L ++    + 
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 286

Query: 330 PDD 332
           P++
Sbjct: 287 PNN 289


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 115/233 (49%), Gaps = 3/233 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  A  L+D+   E ++ +   + TLI      GN    + +   M     +PN+ITY
Sbjct: 158 GKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITY 217

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++D + + ++  +   I+ EM   G+SPN +TY S++    +    +   ++  EM +
Sbjct: 218 NTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVD 277

Query: 220 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             +  +V ++ TL+ A+C + G    A ++  D+      +PD  T+++++     R ++
Sbjct: 278 SKIMPNVVIFTTLVDALCKE-GMVTIAHDVV-DVMIQRGVEPDVVTYTALMDGHCLRSEM 335

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            EA+ +F+ M+  G  PN+   ++LI  Y K QR D  +     + +  + P+
Sbjct: 336 DEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPN 388



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 3/213 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  ++STLI  Y      D  + ++EEM    + PN++TYN L+  +    R      +
Sbjct: 352 PNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIAL 411

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + EM  +G  P+  TY  LL    + R+ +  +++ + ++   +   +  YN ++     
Sbjct: 412 FHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCR 471

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           VG  + A ++F  + SS+   PD WT++ MI     +G ++EA  +F EM   G  P+  
Sbjct: 472 VGELEAAGDLFSSL-SSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDC 530

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               + + + +   T   ++ L  +   G + D
Sbjct: 531 TYNLITRGFLRNNETLSAIQLLQEMLGRGFSAD 563



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 105/247 (42%), Gaps = 5/247 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V +A  + D         D   ++ L+  +      D    V++ M   G  PN+I
Sbjct: 296 KEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVI 355

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y+ L++   + +R  +   +++EM    L PN  TY +L+          D ++++ EM
Sbjct: 356 SYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEM 415

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G    +  Y  LL       + D+A  + + ++ S N  PD  +++ +I      G+
Sbjct: 416 VASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGS-NLAPDIQSYNIVIDGMCRVGE 474

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  +F+ +   G  P+++  T +I          +  +    +   G +PDD    C
Sbjct: 475 LEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDD----C 530

Query: 338 LLNVMTQ 344
             N++T+
Sbjct: 531 TYNLITR 537



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 13/192 (6%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TLI      G     + ++ EM A G  P+++TY  LLD + + +   Q   +
Sbjct: 387 PNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAM 446

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            K +  + L+P+  +Y  ++    R    E    ++  +  KG+   V  Y  ++     
Sbjct: 447 LKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCL 506

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA-----MFNEMLEAGF 293
            G   EA ++F +M +++ C PD  T+ ++IT    RG +   E      +  EML  GF
Sbjct: 507 QGLLAEATKLFREM-NTDGCSPDDCTY-NLIT----RGFLRNNETLSAIQLLQEMLGRGF 560

Query: 294 EPNLFVLTSLIQ 305
             +   +T +++
Sbjct: 561 SADASTITLIVE 572



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           P+   +A +L +    ++    LS+ ++M   G+   V     ++     +   D  F +
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
              +    + QPD+ TF+++I      GK+ EA  +F++M+  GF+PN     +LI    
Sbjct: 132 LAKIFKLGH-QPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLC 190

Query: 309 KAQRTDDVVRALNRLPELGITPD 331
           K   +   +R L  + +    P+
Sbjct: 191 KVGNSRAAIRLLRSMVQKNCEPN 213



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/157 (15%), Positives = 65/157 (41%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  +  +++ A  +           D  +++ +I      G  +   +++  + + G+ P
Sbjct: 433 YLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHP 492

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++ TY  +++ +       +   +++EM  +G SP+  TY  + R + R       + + 
Sbjct: 493 DVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLL 552

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
           +EM  +G     +    ++ M +D G      +I  +
Sbjct: 553 QEMLGRGFSADASTITLIVEMLSDDGLDQSVKQILHE 589


>gi|414591640|tpg|DAA42211.1| TPA: hypothetical protein ZEAMMB73_215753 [Zea mays]
          Length = 299

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 118/223 (52%), Gaps = 8/223 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G +E A  ++D   +    I+PN   + TL+  Y   G  D  L+++ EM   G+KP+ 
Sbjct: 32  VGKMEKALRVFDAMVSAG--IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPST 89

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I Y+ ++D + +A R    K  + EMT++G++ +  TY  +LR   + R  ++ + +++E
Sbjct: 90  ILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKE 149

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++   +++++   NT++         +EA ++F  +  S    P   T+S MIT     G
Sbjct: 150 LRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSR-LVPSVVTYSIMITNLIKEG 208

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            V EAE MF+ M  AG EPN  +L  +++   +  + +++VRA
Sbjct: 209 LVEEAEDMFSSMQNAGCEPNSRLLNHVVR---ELLKKNEIVRA 248



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 81/174 (46%), Gaps = 1/174 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           N+++    +G+ P+ + Y+ L+D      +  +   ++  M   G+ PN   Y +L+  Y
Sbjct: 5   NIFDLKVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGY 64

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            +    ++ LS++REM ++G++ S  LY+ ++      G T  A   F +M  S     D
Sbjct: 65  CKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTES-GIAMD 123

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
             T++ ++          EA  +F E+     + N+  L ++I    + +R ++
Sbjct: 124 ICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEE 177


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 117/226 (51%), Gaps = 1/226 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D   + Y EM    + PN++TY++++  + +A+   +   + 
Sbjct: 203 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVL 262

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ P+  TY S+L  Y  +   ++ +   ++M+  G++ +V  Y +L+      
Sbjct: 263 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKN 322

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA +IF+ M +    +PD  T+ +++   + +G + E  A+ + M+  G +P+  V
Sbjct: 323 GRCTEARKIFDSM-TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 381

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
              LI  Y K ++ D  +   +++ + G+ P+    G +++V+ ++
Sbjct: 382 FNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 427



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G+ + A+  Y    +   RI PN   +S++I     A   D  + V   M   GV P+
Sbjct: 216 KEGDSDKAYSTYHEMLDR--RISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 273

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TYN++L     + +P +     K+M  +G+ PN  TY SL+    +     +   ++ 
Sbjct: 274 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFD 333

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M ++G++  +  Y TLL   A  G   E   +  D+      QPD   F+ +I   + +
Sbjct: 334 SMTKRGLEPDIATYRTLLQGYATKGALVEMHALL-DLMVRNGIQPDHHVFNILICAYAKQ 392

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            KV +A  +F++M + G  PN+    ++I    K+   DD +
Sbjct: 393 EKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 434



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 1/214 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L++  + +  G  P++++Y  +++   +     +  + Y EM D  +SPN  TY+S++ A
Sbjct: 189 LHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAA 248

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
             +A+  +  + V   M + G+      YN++L      G   EA    + M+ S+  +P
Sbjct: 249 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMR-SDGVEP 307

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           +  T+ S++      G+ +EA  +F+ M + G EP++    +L+Q Y       ++   L
Sbjct: 308 NVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALL 367

Query: 321 NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           + +   GI PD      L+    +  K +   LV
Sbjct: 368 DLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLV 401



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +G  + A G   + R++   ++PN   + +L+      G       +++ M   G++P++
Sbjct: 287 SGQPKEAIGTLKKMRSDG--VEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDI 344

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  LL          ++  +   M  NG+ P+ + +  L+ AY +    +  + V+ +
Sbjct: 345 ATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSK 404

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
           M++ G+  +V  Y T++ +    G  D+A   FE
Sbjct: 405 MRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFE 438


>gi|410110147|gb|AFV61153.1| pentatricopeptide repeat-containing protein 123, partial [Phyla
           nodiflora]
          Length = 419

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 162 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHE 221

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 222 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 281

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + +++G 
Sbjct: 282 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDSGE 336

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 337 VKDITVFERMIHLLSKYKKYMNVVEVFDKMRGLGYFPDSNVIAVVLN 383



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 106/210 (50%), Gaps = 1/210 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           ++STL+ +Y     F   L+V+ EM+      ++ T N ++D  G+     +   ++  M
Sbjct: 101 SYSTLLTMYVENXKFLEALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGM 160

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       
Sbjct: 161 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEH 220

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  +
Sbjct: 221 EKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 279

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +I  Y +A       R L+ L      P D
Sbjct: 280 MIVAYERAGLVAHAKRLLHELKRPDNIPRD 309



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +      D  A++ +I ++G A  F    ++  EMK  GV P   +Y+ LL 
Sbjct: 48  AISIFSRLKXSGXXPDLXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLT 107

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                 +  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++ 
Sbjct: 108 MYVENXKFLEALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 167

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  YNTLL +  D     EA  +F  M+  +N + +  T++SMI I     +  +A  +
Sbjct: 168 NVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMIMIYGKTLEHEKANNL 226

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 227 IQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 273



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 1/184 (0%)

Query: 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187
           I  +G  G FD  L+  ++M+   V  +++  +NL++   +     +  +I+  +  +G 
Sbjct: 1   ITHFGKEGLFDXALSWLQKMEXDXVPGDLVLXSNLIELSRKLCDYSKAISIFSRLKXSGX 60

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
            P+   Y +++  +G+A+   +  S+  EMK  G+    T Y+TLL M  +     EA  
Sbjct: 61  XPDLXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMYVENXKFLEALS 120

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+    +L++ Y
Sbjct: 121 VFSEMREXK-CLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY 179

Query: 308 GKAQ 311
           G A+
Sbjct: 180 GDAE 183



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 4/138 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 286 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDSGEVKDIT 341

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+    +    +Y EM
Sbjct: 342 VFERMIHLLSKYKKYMNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLHEFDKASDIYMEM 401

Query: 218 KEKGMQLSVTLYNTLLAM 235
           +E G   S  ++  +L++
Sbjct: 402 QEVGCVFSDEVHFQMLSL 419


>gi|414591617|tpg|DAA42188.1| TPA: hypothetical protein ZEAMMB73_899186 [Zea mays]
          Length = 265

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 114/218 (52%), Gaps = 4/218 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +E A  ++D   +     D   + TL+  Y   G  D  L+++ EM   G+KP+ I YN 
Sbjct: 1   MEKALRVFDAMVSAGIEPDDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 60

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++D + +  R    K  + EMT++G++ +  TY  +LR   + R  ++ + +++E++   
Sbjct: 61  IIDGLFQDGRTVPAKVKFHEMTESGIAMDKYTYNIVLRGLFKNRCFDEAIFLFKELRAMN 120

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +++++   NT++A        +EA ++F  +  S    P   T+S MIT     G V EA
Sbjct: 121 VKINIITLNTMIAGMFQTRRVEEAKDLFASISRS-GLVPCVVTYSIMITNLIKEGLVEEA 179

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           E MF+ M  AG EPN  +L  +++   +  + +++VRA
Sbjct: 180 EDMFSSMQNAGCEPNSRLLNHVVR---ELLKKNEIVRA 214



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 2/186 (1%)

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           E  L V+  M   G++    +Y TL+     +G  DE   +F +M   +  +P +  ++ 
Sbjct: 2   EKALRVFDAMVSAGIEPDDVVYGTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTILYNI 60

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I      G+   A+  F+EM E+G   + +    +++   K +  D+ +     L  + 
Sbjct: 61  IIDGLFQDGRTVPAKVKFHEMTESGIAMDKYTYNIVLRGLFKNRCFDEAIFLFKELRAMN 120

Query: 328 ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 386
           +  +      ++  M QT + EE   L   + +S      V   ++    I+    +EA 
Sbjct: 121 VKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAE 180

Query: 387 ELFNSI 392
           ++F+S+
Sbjct: 181 DMFSSM 186


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 11/232 (4%)

Query: 98  RAGNVEMAFGLYDR-----ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           RAG ++ A+  + +     +++E  + D  +++T+I   G AG  D    +++EM   G 
Sbjct: 251 RAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGC 310

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            P + TYN L+  + +        T++ +M      PN  TY  L+R        +  + 
Sbjct: 311 PPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMK 370

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +   MK +G +  V  YN L+    + G  D+A  +FE M   E C P+  T++ +I+  
Sbjct: 371 LMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERMSKGEECLPNQDTYNIVISAM 430

Query: 273 SCRGKVSE---AEAMFNEMLEAGFEPNLFVLTSL---IQCYGKAQRTDDVVR 318
             R +  +   A  M  EM+E G+ P  F+L  +   +   G  Q + D++R
Sbjct: 431 FVRKRAEDMAIAARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQLSRDLLR 482



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 94/182 (51%), Gaps = 6/182 (3%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+++TYN L D   R K   +   + ++M ++G++P   TY  +L+ + RA   +   + 
Sbjct: 202 PDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNF 261

Query: 214 YREMKEKG-----MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           + +MK++G      +  V  Y T++      G  D+A ++F++M S E C P   T++++
Sbjct: 262 FLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEM-SKEGCPPTIATYNAL 320

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I +   +G V +A  +F++M+   + PN+   T LI+      + D  ++ + R+   G 
Sbjct: 321 IQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGC 380

Query: 329 TP 330
            P
Sbjct: 381 EP 382


>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 3/253 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  ++ +     +     +++TLI  Y   G  +  + +   M+  GV+P+ +T+
Sbjct: 195 GKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTF 254

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++   R  +  +   I+ EM  N + PN  TY +L+  Y +    E    ++ EM  
Sbjct: 255 NTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLR 314

Query: 220 KGMQLSVTLYNTL-LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            G++  +  YN L L +C + G T +A  + +++   EN  P+S TFS++IT    R   
Sbjct: 315 NGIKADILTYNALILGLCME-GRTKKAAYLVKEL-DRENLVPNSSTFSALITGQCVRKNS 372

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
             A  ++  M+ +G  PN      LI  + K +  D  V  +  + E  I PD      L
Sbjct: 373 ERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSEL 432

Query: 339 LNVMTQTPKEELG 351
              +  + KEEL 
Sbjct: 433 CRGLWLSGKEELA 445



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 142/363 (39%), Gaps = 22/363 (6%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P  F +L K Y         ++V+ +MK  G  P + + N  +      +R     T Y+
Sbjct: 111 PCVFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYR 170

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM    +SPN  T   ++ A+ +    E  + V+++M+  G   ++T YNTL+A   + G
Sbjct: 171 EMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCNKG 230

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             +   ++ + +      +PD  TF+++I      GK+ EA  +F+EM      PN    
Sbjct: 231 LLNSGMKL-KILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITY 289

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
            +LI  Y +   ++   R  + +   GI  D      L+             L  C+E  
Sbjct: 290 NTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALI-------------LGLCMEGR 336

Query: 361 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAY--------CNCLIDLCVNLN 412
             K  Y+VK L  E  +       A      + K+ ++A+          C  +      
Sbjct: 337 TKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKM 396

Query: 413 LLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGE 472
           L+   CK  +    +EV  ++  RS    S  L  L  G  L+        L K +E   
Sbjct: 397 LISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKEELALKLCKEMEMKH 456

Query: 473 EFP 475
             P
Sbjct: 457 LMP 459



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 55/126 (43%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ GN EM   L+D       + D   ++ LI      G       + +E+    + PN 
Sbjct: 297 SQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNS 356

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T++ L+      K   +   +YK M  +G  PN++T+  L+  + +    +  + V RE
Sbjct: 357 STFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVRE 416

Query: 217 MKEKGM 222
           M E+ +
Sbjct: 417 MSERSI 422


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y   G  +G  + + +MK+  +KP+ ITYN L++ + +A+R    + +  EM 
Sbjct: 378 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 437

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           DNG++P   T+ +L+ AYGR    E    V  EM+E G++ +V  Y +++      G   
Sbjct: 438 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 497

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  I +DM   ++  P++  ++++I      G   +A  +  +M   G  P++     L
Sbjct: 498 EAVAILDDM-FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLL 556

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I+      +  +    +N L    + PD
Sbjct: 557 IKGLCNQSQISEAEEIINSLSNHRLIPD 584



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+TLI  YG  G  + C  V  EM+  G+KPN+++Y ++++   +  +  +   I  +M 
Sbjct: 448 FNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMF 507

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
              + PN   Y +++ AY      +    +  +MK  G+  S+  YN L+    +     
Sbjct: 508 HKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQIS 567

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA EI   + S+    PD+ +++++I+ C  RG + +A  +   M + G +  +     L
Sbjct: 568 EAEEIINSL-SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 626

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           I   G A R +++     ++ +  + P +     + N+M + 
Sbjct: 627 ISGLGGAGRLNEMEYLYQKMMQNNVVPSN----AIHNIMVEA 664



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E AF  + + ++   + D   ++ LI     A       ++  EM+  GV P + 
Sbjct: 387 QTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 446

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+D  GR  +  +   +  EM +NGL PN  +Y S++ A+ +     + +++  +M
Sbjct: 447 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM 506

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             K +  +  +YN ++    + G  D+AF + E MKS+    P   T++ +I     + +
Sbjct: 507 FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN-GISPSIVTYNLLIKGLCNQSQ 565

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +SEAE + N +      P+     +LI         D  +    R+ + GI
Sbjct: 566 ISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGI 616



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 121/295 (41%), Gaps = 41/295 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A  ++D         +   ++T+I  +   G+ +    + ++M   G+KPN I
Sbjct: 212 RAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAI 271

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL  + RA R  +   +  EM    + P+  TY+ L     R    +  LS++ + 
Sbjct: 272 TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 331

Query: 218 KEKGMQL-----------------------------------SVTLYNTLLAMCADVGYT 242
            + G+ +                                   +  +YNTL+      G  
Sbjct: 332 LKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 391

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           + AF  F  MK S + +PD  T++++I       +++ A+ +  EM + G  P +    +
Sbjct: 392 EGAFSTFGQMK-SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNT 450

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
           LI  YG+  + +     L+ + E G+ P+    G ++N   +      GK+ E V
Sbjct: 451 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN-----GKIPEAV 500



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 40/286 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NM 156
           R  +V  AFG+   A     R D  A++  ++    AG+    + +   M   G  P N 
Sbjct: 144 RHADVRRAFGILASA---GARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNA 200

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN ++  M RA R      ++ EMT+  + PN  TY +++  + +    E    +  +
Sbjct: 201 FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQ 260

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-------- 268
           M   G++ +   YN LL+     G   E   + ++M +S+   PD +T+S +        
Sbjct: 261 MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM-ASQKMVPDGFTYSILFDGLSRNG 319

Query: 269 ----------------ITI----CS------CR-GKVSEAEAMFNEMLEAGFEPNLFVLT 301
                           +TI    CS      C+ GKVS AE +   ++ AG  P   +  
Sbjct: 320 DSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYN 379

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           +LI  Y +    +       ++    I PD      L+N + +  +
Sbjct: 380 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 425



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N +   D  +++TLI      GN D  L++ + M   G+K  + TY+ L+  +G A R  
Sbjct: 578 NHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLN 637

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEK 220
           +++ +Y++M  N + P+   +  ++ AY  ++YG +  +  + +EM +K
Sbjct: 638 EMEYLYQKMMQNNVVPSNAIHNIMVEAY--SKYGNEIKAEDLRKEMLQK 684


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 9/247 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G +  A  ++D  ++   R    +F+T+I     AG+ DG   ++  M   GV P++
Sbjct: 127 VRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDV 186

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY  L+  + R  R    + ++++M   G+ PN   +  L+ A+ +    E  L ++RE
Sbjct: 187 YTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHRE 246

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+E+G++     YN ++           A  I  +M+S+   +PD+ T++++I       
Sbjct: 247 MRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSA-GLRPDTVTYTTLIDGYCKEE 305

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----- 331
           ++  A  +   M+  G   +    T+LI    KA R+ D  R L  + E G+ PD     
Sbjct: 306 ELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYT 365

Query: 332 ---DRFC 335
              D FC
Sbjct: 366 MVIDAFC 372



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 113/235 (48%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +E A G++++      + +   F+ LI  +   G+ +  L ++ EM+  GV+P+ +
Sbjct: 198 RVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAV 257

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN +++ + RA+       I  EM   GL P+  TY +L+  Y +    +  + + + M
Sbjct: 258 TYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNM 317

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+ L    Y  L++  +  G + +A  +  +M  +   +PD+ T++ +I     +G 
Sbjct: 318 VAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA-GLEPDNTTYTMVIDAFCRKGD 376

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           V     +  EM   G +P +     ++  + K  +  +    LN +  +G++PDD
Sbjct: 377 VKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDD 431



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 149/316 (47%), Gaps = 11/316 (3%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ L++     G      NV++EM++ GV+  ++++N ++  M RA      +T+++ M+
Sbjct: 119 FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMS 178

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G++P+  TY +L++   R    ED   V+ +M  +GM+ +  ++  L+      G  +
Sbjct: 179 EAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAE 238

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
              E+  +M+     +PD+ T+++++  +C  R  +  A  +  EM  AG  P+    T+
Sbjct: 239 TMLELHREMR-ERGVRPDAVTYNAIVNGLCRAR-DLKSASGIVVEMRSAGLRPDTVTYTT 296

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVEC- 356
           LI  Y K +  D  +     +   G+  D+     L++ +++  +       LG+++E  
Sbjct: 297 LIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAG 356

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLEN 416
           +E  N+    V+     + D++   +    E+ N   K     Y N +++    L  ++N
Sbjct: 357 LEPDNTTYTMVIDAFCRKGDVKTGLRL-LKEMQNKGRKPGVVTY-NVIMNGFCKLGQMKN 414

Query: 417 ACKLLELGLTLEVYTD 432
           A  LL   + + V  D
Sbjct: 415 ADMLLNAMINIGVSPD 430



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 4/207 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA +++ A G+    R+   R D   ++TLI  Y      D  + + + M A GV  + +
Sbjct: 268 RARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEV 327

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  + +A R    + +  EM + GL P+  TY  ++ A+ R    +  L + +EM
Sbjct: 328 TYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEM 387

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + KG +  V  YN ++     +G    A  +   M +     PD  T++ ++      GK
Sbjct: 388 QNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINI-GVSPDDITYNILLDGHCKHGK 446

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           V++ E + +     G  P+L V TS++
Sbjct: 447 VTDIEELKS---AKGTVPDLGVYTSIV 470



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 1/153 (0%)

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y ++ D GL P    +  L+R   R        +V+ EM+ +G++ +V  +NT+++    
Sbjct: 104 YLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCR 163

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D A  +   M S     PD +T+ ++I      G++ +A  +F +M   G +PN  
Sbjct: 164 AGDLDGAETLHRRM-SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAV 222

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V T LI  + K    + ++     + E G+ PD
Sbjct: 223 VFTILIDAHCKKGDAETMLELHREMRERGVRPD 255



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
           + Y ++ + G+     L+N L+     +G    A  +F++M+ S   +    +F++MI+ 
Sbjct: 102 AFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQ-SRGVRRTVVSFNTMISG 160

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G +  AE +   M EAG  P+++   +LIQ   +  R +D      ++   G+ P+
Sbjct: 161 MCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPN 220


>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           barbata]
          Length = 364

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 120 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 179

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 180 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 239

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 240 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 294

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +V    +++  LG  PD      +LN
Sbjct: 295 VKDITVFERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSNVIAVVLN 341



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  ++STL+ +Y     F   L+V+ EM+ I    ++ T N ++D  G+     +   +
Sbjct: 55  PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 114

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M   G+ PN  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +   
Sbjct: 115 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 174

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               ++A  + ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  
Sbjct: 175 TLEHEKANNLIQEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQI 233

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  ++I  Y +A       R L+ L      P D
Sbjct: 234 LFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRD 267



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 36/231 (15%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           ++   ++++  +K  G  P+++ YN +++  G+AK   + +++  EM   G+ PN  +Y+
Sbjct: 2   DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYS 61

Query: 196 SLLRAYGRARYGEDTLSVYREMKE-----------------------------------K 220
           +LL  Y   +   + LSV+ EM+E                                    
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +
Sbjct: 122 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEK 180

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 231



 Score = 41.6 bits (96), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 244 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 299

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+    +    VY EM
Sbjct: 300 VFERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSNVIAVVLNAYGKLXEFDKANDVYMEM 359

Query: 218 KEKG 221
           +E G
Sbjct: 360 QEVG 363


>gi|302757297|ref|XP_002962072.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
 gi|300170731|gb|EFJ37332.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
          Length = 413

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 2/245 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG    AF + +   + K  I  NA+++LI      G+    + ++E MK   V P +
Sbjct: 3   SRAGRRRTAFKVLEWLSDRKRGIHANAYNSLITGLMKDGDEADAIAIFERMKQDRVAPTL 62

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            TY  ++  +   +       ++ E+  +G L P+   Y ++L AYGR    E  L  + 
Sbjct: 63  YTYTAVMRALAHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWE 122

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M+++G   +V  Y  L++        D A + +  M +S+  +     +  ++ +C+ +
Sbjct: 123 RMRKEGCVENVGTYCLLVSTFVQTNQADLALDAYARM-NSQGLKATDGIYRGLVCVCATQ 181

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G+   A   F EMLE+G +P +     L++  GKA + + V+  L R+   G+ PD    
Sbjct: 182 GRWLVALTFFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTV 241

Query: 336 GCLLN 340
             +LN
Sbjct: 242 NAVLN 246



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++A   Y R  ++  +     +  L+ +  T G +   L  ++EM   G KP ++TYN L
Sbjct: 150 DLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNVL 209

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  +G+A +   V  +   M  +G++P++ T  ++L     AR  +  +  +  +K  GM
Sbjct: 210 MRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGM 269

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +L   +YN +L  C      + A  + ++M+ +    P+  TF  ++  C    +V  A 
Sbjct: 270 KLDREVYNVILVACQKSKNWEAALSLVQEMEQT-GIAPNEVTFGPLLVACENAKQVEVAL 328

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGK 309
            ++  M +    PN  V+ SLI+  GK
Sbjct: 329 RLYEHMKQRRCVPNTHVVASLIRACGK 355



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 102/238 (42%), Gaps = 6/238 (2%)

Query: 105 AFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNN 161
           A  +++R + +  R+ P    ++ +++       ++    ++ E+   G +KP++  YN 
Sbjct: 46  AIAIFERMKQD--RVAPTLYTYTAVMRALAHVQGWESAHRMFSELVVHGSLKPDVAMYNT 103

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +L   GR  +  +V   ++ M   G   N  TY  L+  + +    +  L  Y  M  +G
Sbjct: 104 MLAAYGRGHKLERVLQTWERMRKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQG 163

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +  +Y  L+ +CA  G    A   F++M  S  C+P   T++ ++      GK    
Sbjct: 164 LKATDGIYRGLVCVCATQGRWLVALTFFKEMLES-GCKPTIVTYNVLMRALGKAGKWEIV 222

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             +   M  +G  P+ + + +++     A+  D  +   + +   G+  D      +L
Sbjct: 223 LDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGMKLDREVYNVIL 280


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V  A  L DR      + +   + T++      G+ D  LN+  +M    +K +++
Sbjct: 22  REGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKMDESHIKADVV 81

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYR 215
            Y  ++D + +     + + ++ EM D G+ PN  TY  ++   G   YG+  D   + R
Sbjct: 82  IYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMID--GCCSYGKWTDAEQLLR 139

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M E  +   V  +N L+      G   EA E++ +M    N  PD+ T++S+I      
Sbjct: 140 DMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLG-RNIFPDTITYNSLIDGFCKH 198

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ +A+ +F+ M+  G  PN+  + +LI    +A+R DD ++ L+ +   G+ PD
Sbjct: 199 SRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPD 254



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  AF+TL+      G       + + M   G +PN +TY  +++ M +         + 
Sbjct: 9   DVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLL 68

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M ++ +  +   Y +++    +  +     +++ EM +KG+  +V  YN ++  C   
Sbjct: 69  RKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSY 128

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A ++  DM  S N  PD  TF+++I      GK+SEAE ++ EML     P+   
Sbjct: 129 GKWTDAEQLLRDMIES-NVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTIT 187

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SLI  + K  R DD     + +   G +P+
Sbjct: 188 YNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPN 219



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 3/214 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+ + A  L  +      + D   ++ +I      G+     N++ EM   G+ PN++
Sbjct: 57  KMGDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVL 116

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++D      +    + + ++M ++ + P+  T+ +L+ A+ +     +   +YREM
Sbjct: 117 TYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREM 176

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             + +      YN+L+         D+A  IF D+  S+   P+  T +++I  C CR K
Sbjct: 177 LGRNIFPDTITYNSLIDGFCKHSRLDDAKHIF-DLMVSKGGSPNVITINTLIGGC-CRAK 234

Query: 278 -VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            V +   + +EML  G  P+     +LI  + +A
Sbjct: 235 RVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQA 268



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           +DP+   F+ LI  +   G       +Y EM    + P+ ITYN+L+D   +  R    K
Sbjct: 146 VDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAK 205

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I+  M   G SPN  T  +L+    RA+  +D + +  EM  +G+      YNTL+   
Sbjct: 206 HIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGF 265

Query: 237 ADVGYTDEAFEIFEDMKS 254
              G  + A ++F++M S
Sbjct: 266 CQAGDLNAAQDLFQEMIS 283



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 81/215 (37%), Gaps = 41/215 (19%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G + +++ +N L++ + R  R  + + +   M +NG  PN  TY +++            
Sbjct: 5   GCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNG---------- 54

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
                                   MC  +G TD A  +   M  S + + D   ++++I 
Sbjct: 55  ------------------------MCK-MGDTDSALNLLRKMDES-HIKADVVIYTAIID 88

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G  S+A+ +F EM + G  PN+     +I       +  D  + L  + E  + P
Sbjct: 89  RLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDP 148

Query: 331 DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 365
           D      L+N   +      GK+ E  E     LG
Sbjct: 149 DVVTFNALINAFVKE-----GKISEAEELYREMLG 178



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           + CQ D   F++++      G+V EAEA+ + M+E G +PN     +++    K   TD 
Sbjct: 4   KGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDS 63

Query: 316 VVRALNRLPELGITPD--------DRFC 335
            +  L ++ E  I  D        DR C
Sbjct: 64  ALNLLRKMDESHIKADVVIYTAIIDRLC 91


>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 978

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 8/220 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V+ A  +Y   R    +  P  ++ ++      GN D  L VY+++K  GVKP+ +
Sbjct: 449 RAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEV 508

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            ++ L+D  G A+   +  +I   M   GL P    Y+SL+         E  L VY+++
Sbjct: 509 FFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDI 568

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G+Q +V+ +N L+    +      A  I +D+K+S    P+  ++S ++  C     
Sbjct: 569 RSSGLQPTVSTFNALMTALCEANQFTRALSILQDVKNS-GIMPNQISYSILLRACEKEKM 627

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSL-------IQCYGKA 310
              A  ++   L  G +PN+ +  S+       IQ Y  A
Sbjct: 628 ADMALDLYMTALSEGIKPNVGICDSITGLCLQQIQSYAAA 667



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 121/250 (48%), Gaps = 3/250 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           TRAG V+ AF +    + E   I P+   +  LI     AG  D  L VY+ M+   VK 
Sbjct: 411 TRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRESNVKG 470

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +   Y  ++    +         +Y ++  +G+ P+   +++L+ A G A+  E   S+ 
Sbjct: 471 SPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAGHAQDIEKAFSII 530

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             MK++G++    +Y++L+ +C+++G  ++A E+++D++SS   QP   TF++++T    
Sbjct: 531 ANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSS-GLQPTVSTFNALMTALCE 589

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             + + A ++  ++  +G  PN    + L++   K +  D  +         GI P+   
Sbjct: 590 ANQFTRALSILQDVKNSGIMPNQISYSILLRACEKEKMADMALDLYMTALSEGIKPNVGI 649

Query: 335 CGCLLNVMTQ 344
           C  +  +  Q
Sbjct: 650 CDSITGLCLQ 659



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 122/271 (45%), Gaps = 5/271 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+VE AF      R          ++ L+ +   A + DG L V   +++ G+K + + Y
Sbjct: 277 GSVEDAFAFAKLMREFSTL---QHYTMLLSVCCHAKDIDGALRVLALLESRGLKADCMFY 333

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +L+    +A +   +  I+ EM   G+  N +T+ +++    RA         Y  M  
Sbjct: 334 TSLISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMIS 393

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKV 278
           K ++    ++NTL+  C   G    AF++  DMK+     +PD  T+ ++I+ C+  G+V
Sbjct: 394 KNVKPDRVIFNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEV 453

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
             A  ++  M E+  + +    T+++    +    D  +   + L + G+ PD+ F   L
Sbjct: 454 DRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSAL 513

Query: 339 LNVMTQTPK-EELGKLVECVEKSNSKLGYVV 368
           ++        E+   ++  ++K   K G VV
Sbjct: 514 VDAAGHAQDIEKAFSIIANMKKEGLKPGAVV 544


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I      G  D    +++EM   G+ PN ITYN LL     + +P +   I+
Sbjct: 205 DVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIF 264

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M  +G+ P+  TY +L+    +     +   V+  M +KG +   ++Y TLL   A  
Sbjct: 265 RKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATE 324

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           GY  +  ++  D+      QPD + F+ +I   +  G V EA   F++M + G  PN+  
Sbjct: 325 GYLVQMHQLL-DVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVT 383

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +++    +  + DD +   +RL   G+TP+
Sbjct: 384 YGTVMDALCRVGKVDDAMSQFDRLISEGLTPN 415



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 143/333 (42%), Gaps = 13/333 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A+ L+D   ++    +   ++ L+  Y ++G     + ++ +M   GV+P+++
Sbjct: 218 REGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVV 277

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + +  R  + + ++  M   G  P+ + Y +LL  Y    Y      +   M
Sbjct: 278 TYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVM 337

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G Q    ++N L+   A  G  DEA   F  M+  +   P+  T+ +++      GK
Sbjct: 338 VRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMR-QQGLHPNIVTYGTVMDALCRVGK 396

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A + F+ ++  G  PN  V  +LI       + D        +   GI P+  F   
Sbjct: 397 VDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNT 456

Query: 338 LLNVMTQ----TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
           LLN + +    T  + +  L+  V+     + Y    L++   ++G    EAT+L   + 
Sbjct: 457 LLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTT--LIDGYCLDGKV-DEATKLLEGMV 513

Query: 394 KDVKK----AYCNCLIDLCVNLNLLENACKLLE 422
            D  K     Y   +   C N   +E+AC L  
Sbjct: 514 LDGVKPNEVTYNTIINGYCKN-GRIEDACSLFR 545



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 125/293 (42%), Gaps = 41/293 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +RAG++++AF    R     W      FS L+K L       D        M A+G  PN
Sbjct: 107 SRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPN 166

Query: 156 MITYNNLL----------------------DTMG-----------------RAKRPWQVK 176
             +YN LL                      DT G                 R  +  +  
Sbjct: 167 AFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAY 226

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++ EM D G+SPN  TY  LL  Y  +   ++ + ++R+M   G++  V  YNTL+   
Sbjct: 227 CLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYL 286

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G + EA ++F+ M    + +PDS  + +++   +  G + +   + + M+  G +P+
Sbjct: 287 CKNGRSMEARKVFDSMVKKGH-KPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPD 345

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            ++   LI  Y K    D+ + A +++ + G+ P+    G +++ + +  K +
Sbjct: 346 HYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVD 398



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 13/216 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  ++D       + D   ++TLI  Y   G  D    + E M   GVKPN +
Sbjct: 463 KEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEV 522

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN +++   +  R     +++++M   G++P    Y+++L    + R       +Y  M
Sbjct: 523 TYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWM 582

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICS 273
            + G++L +  YN +L        TD+A  +F ++     C  D    + TF+ MI    
Sbjct: 583 IKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNL-----CLIDFHLQNRTFNIMIDALL 637

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNL----FVLTSLIQ 305
             G+  EA+ +F  +L  G  PN+     ++ SLI+
Sbjct: 638 KGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIE 673



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 110/288 (38%), Gaps = 36/288 (12%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D    +  + D + + TL+  Y T G       + + M   G +P
Sbjct: 285 YLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQP 344

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS-- 212
           +   +N L+    +     +    + +M   GL PN  TY +++ A  R    +D +S  
Sbjct: 345 DHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQF 404

Query: 213 -------------VYR--------------------EMKEKGMQLSVTLYNTLLAMCADV 239
                        V+R                    EM  +G+  +   +NTLL      
Sbjct: 405 DRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKE 464

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G    A  IF D+    + Q D  T++++I      GKV EA  +   M+  G +PN   
Sbjct: 465 GMVTRAKNIF-DLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVT 523

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
             ++I  Y K  R +D      ++   G+ P       +L+ + QT +
Sbjct: 524 YNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRR 571



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/255 (20%), Positives = 109/255 (42%), Gaps = 1/255 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A   +DR  +E    +   F TLI        +D    +  EM   G+ PN I
Sbjct: 393 RVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTI 452

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +N LL+ + +     + K I+  M    +  +  TY +L+  Y      ++   +   M
Sbjct: 453 FFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGM 512

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++ +   YNT++      G  ++A  +F  M +S+   P    +S+++       +
Sbjct: 513 VLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQM-ASKGVNPGIVIYSTILHGLFQTRR 571

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           ++ A+ ++  M++ G +  +     ++Q   +   TDD +R  + L  +     +R    
Sbjct: 572 IAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNI 631

Query: 338 LLNVMTQTPKEELGK 352
           +++ + +  + +  K
Sbjct: 632 MIDALLKGGRHDEAK 646


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 3/220 (1%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  + PN   FSTL+    +       + +++EM  +G +P++ITY+ +++ + +     
Sbjct: 40  KLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTT 99

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
               + K+M + G  PN   Y++++ +  + +   + +    EM  +G+  +V  Y+++L
Sbjct: 100 MAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSIL 159

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
               ++G ++EA  +F+ M    N  PD+ TF+ ++   S  G + EA+ +F  M+E G 
Sbjct: 160 HGFCNLGRSNEATSLFKQM-VERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGV 218

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           EPN+    +L+  Y    + D+  +  N +   G  P  R
Sbjct: 219 EPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVR 258



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 112/227 (49%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+D      +  D   +ST+I      G+    + + ++M+  G KPN++ Y+ ++D
Sbjct: 66  AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID 125

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           ++ + K   +      EM + G+SPN  TY+S+L  +       +  S++++M E+ +  
Sbjct: 126 SLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMP 185

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               +N L+   +  G   EA  +FE M   +  +P+  T+++++     + ++ EA+ +
Sbjct: 186 DTVTFNILVDGLSKEGMILEAQCVFETM-IEKGVEPNVNTYNALMDGYCSQSQMDEAQKL 244

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           FN M+  G  P++     LI+ + K+ R D+    L  +    +TPD
Sbjct: 245 FNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPD 291



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 108/228 (47%), Gaps = 7/228 (3%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           ++PN   ++ L+  Y +    D    ++  M   G  P++ +YN L+    ++ R  + K
Sbjct: 218 VEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAK 277

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  EM+   L+P+  TY++L++ + +    +D   +  EM+  G+   +  Y+ +L   
Sbjct: 278 GLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGL 337

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G+ DEAFE+ + M+ S+  +P+ + ++ +I      GK+  A  +F+ +   G +P+
Sbjct: 338 CKQGHLDEAFELLKAMQESK-IEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPD 396

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +   T +I    K   +++       +   G  P+     C  NV+ Q
Sbjct: 397 VVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNS----CTYNVIIQ 440



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G ++ A GL     ++    D   +STL+K +   G       + EEM++ G+ P+++
Sbjct: 269 KSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLM 328

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYR 215
           TY+ +LD + +     +   + K M ++ + PN   Y  L++  G   +G  E    ++ 
Sbjct: 329 TYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQ--GMCNFGKLEAARELFS 386

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            +  KG+Q  V  Y  +++     G ++EA E+F DM +   C P+S T++ +I      
Sbjct: 387 NLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDM-AVHGCLPNSCTYNVIIQGFLRN 445

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           G  S A  +  EM+  GF  +    +S  Q     +  D+++
Sbjct: 446 GDTSNAGRLIEEMVGRGFSAD----SSTFQMLSDLESRDEII 483



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 3/190 (1%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           V+E M   GV+PN+ TYN L+D      +  + + ++  M   G +P+  +Y  L++ + 
Sbjct: 209 VFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHC 268

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPD 261
           ++   ++   +  EM  K +      Y+TL+   C D G   +A ++ E+M+S     PD
Sbjct: 269 KSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQD-GRPQDAQKLLEEMRSY-GLLPD 326

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             T+S ++     +G + EA  +   M E+  EPN+F+ T LIQ      + +      +
Sbjct: 327 LMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFS 386

Query: 322 RLPELGITPD 331
            L   GI PD
Sbjct: 387 NLFVKGIQPD 396



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 99/209 (47%), Gaps = 1/209 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ LIK +  +G  D    +  EM    + P+ +TY+ L+    +  RP   + + +EM
Sbjct: 259 SYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEM 318

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              GL P+  TY+ +L    +  + ++   + + M+E  ++ ++ +Y  L+    + G  
Sbjct: 319 RSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKL 378

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           + A E+F ++   +  QPD  T++ MI+     G  +EA  +F +M   G  PN      
Sbjct: 379 EAARELFSNL-FVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNV 437

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +IQ + +   T +  R +  +   G + D
Sbjct: 438 IIQGFLRNGDTSNAGRLIEEMVGRGFSAD 466


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 3/218 (1%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I P+A  F+TLI      G     + ++ EM   G +PN+I+YN +++ + +     
Sbjct: 159 KLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTI 218

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
               ++++M  N   PN  TY +++ +  + R   + +    EM ++G+   V  YNT+L
Sbjct: 219 MAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTIL 278

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                +G  +EA  +F++M    N  PD+ TF+ ++      G VSEA  +   M E G 
Sbjct: 279 HGFCSLGQLNEATRLFKEM-VGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGA 337

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EPN +   +L+  Y    + D+ ++ L  +   G  P+
Sbjct: 338 EPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPN 375



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 110/233 (47%), Gaps = 1/233 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++T++  + + G  +    +++EM    V P+ +T+N L+D + +     + + + 
Sbjct: 270 DVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVS 329

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + MT+ G  PN  TY +L+  Y      ++ + V   M  KG   +++ YN L+      
Sbjct: 330 ETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKS 389

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              +EA  +  +M S +N  PD+ T+S+++      G+  EA  +F EM  +G  P+L  
Sbjct: 390 KRMNEAKRLLSEM-SEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMA 448

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
            + L+  + K    D+ ++ L  + E  I P+      L+  M    K E+ K
Sbjct: 449 YSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAK 501



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  +++ LI  Y  +   +    +  EM    + P+ +TY+ L+  + +  RP +   +
Sbjct: 374 PNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNL 433

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +KEM  +GL P+   Y+ LL  + +  + ++ L + +EM E+ ++ ++ LY  L+     
Sbjct: 434 FKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFI 493

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  + A E+F  + S++  +PD WT++ MI      G   EA   F +M + GF P+  
Sbjct: 494 AGKLEVAKELFSKL-SADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSC 552

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRL 323
               +IQ + + Q +   ++ ++ +
Sbjct: 553 SYNVIIQGFLQNQDSSTAIQLIDEM 577



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 1/189 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           V E M   G +PN  TYN L+D      +  +   +   M   G +PN ++Y  L+  Y 
Sbjct: 328 VSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYC 387

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +++   +   +  EM EK +      Y+TL+     VG   EA  +F++M SS    PD 
Sbjct: 388 KSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSS-GLLPDL 446

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             +S ++      G + EA  +  EM E   +PN+ + T LI+    A + +      ++
Sbjct: 447 MAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSK 506

Query: 323 LPELGITPD 331
           L   GI PD
Sbjct: 507 LSADGIRPD 515



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 5/203 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STL++     G     LN+++EM + G+ P+++ Y+ LLD   +     +   + 
Sbjct: 410 DTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLL 469

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KEM +  + PN   Y  L+R    A   E    ++ ++   G++  +  YN ++      
Sbjct: 470 KEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKE 529

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G +DEA+E F  M+  +   PDS +++ +I         S A  + +EM+   F  +   
Sbjct: 530 GLSDEAYEFFRKME-DDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSAD--- 585

Query: 300 LTSLIQCYGKAQRTDDVVRALNR 322
            +S  Q     +  D+++    R
Sbjct: 586 -SSTFQMLLDLESHDEIISRFMR 607



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196
            D  L  +  M  +  +P+++ +   L ++ + K+     ++  +M   G++ N  +   
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNV 136

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L+    R  + +  +SV  +M + G+Q     +NTL+    + G   EA  +F +M  S 
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSG 196

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           + +P+  +++++I      G    A  +F +M +   +PN+    ++I    K +  ++ 
Sbjct: 197 H-EPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEA 255

Query: 317 VRALNRLPELGITPD--------DRFCGC-LLNVMTQTPKEELGKLV 354
           V  L+ + + GI PD          FC    LN  T+  KE +G+ V
Sbjct: 256 VEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNV 302



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 1/174 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    A  L+    +     D  A+S L+  +   G+ D  L + +EM    +KPN+I
Sbjct: 423 QVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNII 482

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+  M  A +    K ++ +++ +G+ P+  TY  +++   +    ++    +R+M
Sbjct: 483 LYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKM 542

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
           ++ G       YN ++        +  A ++ ++M   +    DS TF  ++ +
Sbjct: 543 EDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM-VGKRFSADSSTFQMLLDL 595


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 148/304 (48%), Gaps = 15/304 (4%)

Query: 99  AGNVEMAFGLYDRA-RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           AG+V  A  +  R  ++    +D  A + L+      G+      V++EM  +G+ PN +
Sbjct: 15  AGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEV 74

Query: 158 TYNNLLD---TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           TY  L+    T G+ ++ +    +++EM   G+ PN  TY  L+  + R    E   S++
Sbjct: 75  TYTALMHGYFTHGQREKGF---ALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLF 131

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM  +G+  +V  YNTL+A     G   +A ++  DM  +E  +P   TF+ ++     
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLL-DMMRTEGTRPSIITFNLLVDGYGK 190

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            GK+S A   FN+M  AGF+P+      LI  + +A+      RAL+ + E G+ P    
Sbjct: 191 AGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVT 250

Query: 335 CGCLLNVMTQTPKEELGKLVECV---EKSNSKL-GYVVKLLLEEQDIEGDFKKEATELFN 390
              L++   +  +  +GK  E +   EK+  ++  +   +L+    +EG+  K+A +LF 
Sbjct: 251 YTILIDSFAR--ENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNM-KDARKLFQ 307

Query: 391 SISK 394
           S+ +
Sbjct: 308 SMGE 311



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 112/250 (44%), Gaps = 1/250 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  E A  L+D         +  +++TLI      G       + + M+  G +P++I
Sbjct: 120 RTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSII 179

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+D  G+A +       + +M   G  P+  TY  L+  + RAR          +M
Sbjct: 180 TFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDM 239

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE+G++ +   Y  L+   A   +  +AFEI   M+ +   + D+ T+  ++      G 
Sbjct: 240 KERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKA-GLEVDAHTYGVLVRALCMEGN 298

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +A  +F  M E G EP+  +   +I  YG+   +   ++ +  + + G+ P+    G 
Sbjct: 299 MKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGL 358

Query: 338 LLNVMTQTPK 347
            + V+ +  K
Sbjct: 359 TIRVLCKDDK 368



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 17/251 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +  A  L D  R E  R     F+ L+  YG AG     L  + +MKA G +P+ +
Sbjct: 155 RHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAV 214

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+    RA+   +      +M + GL P   TY  L+ ++ R  +      +   M
Sbjct: 215 TYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGM 274

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++ G+++    Y  L+ A+C + G   +A ++F+ M   +  +P +  +  MI      G
Sbjct: 275 EKAGLEVDAHTYGVLVRALCME-GNMKDARKLFQSM-GEKGVEPSNVIYDMMIYGYGREG 332

Query: 277 KVSEAEAMFNEMLEAGFEPN-------LFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
              +A  +  EM + G  PN       + VL    +C       DD+VRA       G+ 
Sbjct: 333 SSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVRA-------GLQ 385

Query: 330 PDDRFCGCLLN 340
             +  C  LL+
Sbjct: 386 TSESICQALLD 396


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 12/248 (4%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG  E A  +++  +         A++ L+K Y   G+     ++  EM+  G  P+  T
Sbjct: 375 AGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHT 434

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ L+D    A R    + + KEM  +G+ PN   ++ +L +Y      + +  V REM+
Sbjct: 435 YSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR 494

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
             G+      YN ++         D A   F+ M+  E  QPD+ T++++I  C C+ G 
Sbjct: 495 NSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMR-MEGVQPDAVTWNTLID-CHCKSGH 552

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
            ++AE +F  M E+G  P       +I  +G+ +R +DV   L ++   G+         
Sbjct: 553 HNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGL--------- 603

Query: 338 LLNVMTQT 345
           L NV+T T
Sbjct: 604 LANVVTYT 611



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 128/280 (45%), Gaps = 31/280 (11%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G+++ A  +        +  D + +S LI  Y  AG ++    V +EM+A GV+PN 
Sbjct: 408 VKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNS 467

Query: 157 ITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             ++ +L +  R +  WQ    + +EM ++G+SP+ + Y  ++  +G+    +  L+ + 
Sbjct: 468 YVFSRILASY-RDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFD 526

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT----- 270
            M+ +G+Q     +NTL+      G+ ++A E+FE M+ S  C P + T++ MI      
Sbjct: 527 RMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQES-GCSPCTTTYNIMINSFGEQ 585

Query: 271 -----ICSCRGKVS------------------EAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
                + +  GK+                   +A   F  M   G +P++ VL SLI  +
Sbjct: 586 ERWEDVKTLLGKMQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAF 645

Query: 308 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           G+ +R  +    L  + E  + PD      L+  + +  K
Sbjct: 646 GEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEK 685



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 11/255 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+V  A       +             +I   G AG  +    ++EE+K  G+ P   
Sbjct: 339 KSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTR 398

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LL    +       ++I  EM  +G SP+ +TY+ L+ AY  A   E    V +EM
Sbjct: 399 AYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEM 458

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI---CSC 274
           +  G++ +  +++ +LA   D G   ++F++  +M++S    PD   ++ MI     C+C
Sbjct: 459 EASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNS-GVSPDRHFYNVMIDTFGKCNC 517

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
              +  A A F+ M   G +P+     +LI C+ K+   +        + E G +P    
Sbjct: 518 ---LDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSP---- 570

Query: 335 CGCLLNVMTQTPKEE 349
           C    N+M  +  E+
Sbjct: 571 CTTTYNIMINSFGEQ 585



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 125/264 (47%), Gaps = 18/264 (6%)

Query: 70  TGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK 129
           +G  P SY++        S++   SY  R G  + +F +    RN     D + ++ +I 
Sbjct: 461 SGVRPNSYVF--------SRIL-ASYRDR-GKWQKSFQVLREMRNSGVSPDRHFYNVMID 510

Query: 130 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 189
            +G     D  L  ++ M+  GV+P+ +T+N L+D   ++    + + +++ M ++G SP
Sbjct: 511 TFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSP 570

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
              TY  ++ ++G     ED  ++  +M+ +G+  +V  Y TL       G +++A   F
Sbjct: 571 CTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTL-------GLSEQAINAF 623

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
             M+ ++  +P     +S+I       + +EA ++   M E   +P++   T+L++   +
Sbjct: 624 RVMR-ADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIR 682

Query: 310 AQRTDDVVRALNRLPELGITPDDR 333
            ++ D V      +   G TPD +
Sbjct: 683 VEKFDKVPAVYEEMTLSGCTPDRK 706



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 11/269 (4%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL--SVY 214
           +TYN L+    R     +   +   M  +G   ++  Y+ ++++  R    + ++   +Y
Sbjct: 256 LTYNALIGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIY 315

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            E++   ++L   L N ++   A  G  + A   F  M       P + T  ++IT    
Sbjct: 316 AEIESDKIELDGQLLNDIIVGFAKSGDVNRAMS-FLAMVQGNGLSPKTATLVAVITALGN 374

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+  EAEA+F E+ E G  P      +L++ Y K     D    ++ +   G +PD+  
Sbjct: 375 AGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHT 434

Query: 335 CGCLLNVMTQTPKEELGKLV-ECVEKSNSKL-GYVVKLLLEEQDIEGDFKKE---ATELF 389
              L++      + E  ++V + +E S  +   YV   +L      G ++K      E+ 
Sbjct: 435 YSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR 494

Query: 390 NS-ISKDVKKAYCNCLIDLCVNLNLLENA 417
           NS +S D  + + N +ID     N L++A
Sbjct: 495 NSGVSPD--RHFYNVMIDTFGKCNCLDHA 521



 Score = 45.1 bits (105), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T  G  E A   +   R +  +      ++LI  +G         +V + MK   +KP++
Sbjct: 611 TTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDV 670

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           +TY  L+  + R ++  +V  +Y+EMT +G +P+    A L  A    RY E TL
Sbjct: 671 VTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSAL---RYMERTL 722


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 2/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           R G V+ AF L++   +    + DP  ++ LI  +   G  D   NV + MK+ G  PN+
Sbjct: 281 RNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNV 340

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             Y+ L+D + +  +    K +  E+  +GL P+  TY SL+    R    ++ + +  E
Sbjct: 341 YNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEE 400

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MKE G Q     +N LL      G  +EA ++ E +   +    +  ++  ++   + + 
Sbjct: 401 MKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKL-PQQGVYLNKGSYRIVLNSLTQKC 459

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           ++  A+ +   ML  GF+P+      L+ C  KA   DD   AL  L E+G  P
Sbjct: 460 ELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQP 513



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 125/262 (47%), Gaps = 11/262 (4%)

Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PNMIT 158
           V++A  L   A+ +  R  PN   F+ L+K +   G+ D    + EEM+      PN++T
Sbjct: 213 VDLARKLLLHAKRDLTR-KPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVT 271

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           Y+ L+D + R  R  +   +++EM   + + P+  TY  L+  + R    +   +V + M
Sbjct: 272 YSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFM 331

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K  G   +V  Y+ L+     VG  ++A  +  ++K S   +PD+ T++S+I      GK
Sbjct: 332 KSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGS-GLKPDAVTYTSLINFLCRNGK 390

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
             EA  +  EM E G + +      L+    +  + ++ +  + +LP+ G+  +      
Sbjct: 391 SDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRI 450

Query: 338 LLNVMTQT-----PKEELGKLV 354
           +LN +TQ       KE LG ++
Sbjct: 451 VLNSLTQKCELKRAKELLGLML 472


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 119/232 (51%), Gaps = 13/232 (5%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K R +P+   ++ L++ +  AG       V+++MK  G++PN+ TY+ ++D + R  +  
Sbjct: 248 KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQIS 307

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++ +M D+G +PN  T+ +L+R + +A   E  L VY +MK+ G +     YN L+
Sbjct: 308 RAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLI 367

Query: 234 -AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
              C D    + A ++   M   + C+ ++ TF+++      +  V+ A  M+++M+EA 
Sbjct: 368 ETHCRDENL-ENAVKVLNTM-IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAK 425

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 336
            EPN      L++ +  ++ TD V++    + +  + P+          FCG
Sbjct: 426 CEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCG 477



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +AF  +  +R++  +  P+ ++ +I L G    FD   ++ + MK+  V+ ++ T+  L+
Sbjct: 134 LAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTILI 193

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
               RA    +    +  M D G  P+   ++ ++    R R   +  S +  +K++  +
Sbjct: 194 RRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDR-FE 252

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAE 282
             V +Y  L+      G   EA ++F+DMK +   +P+ +T+S +I  +C C G++S A 
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKDMKLA-GIEPNVYTYSIVIDALCRC-GQISRAH 310

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +F +ML++G  PN     +L++ + KA R + V++  N++ +LG  PD
Sbjct: 311 DVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPD 359



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 39/211 (18%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR---------- 168
           PNA  F+ L++++  AG  +  L VY +MK +G +P+ ITYN L++T  R          
Sbjct: 323 PNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKV 382

Query: 169 ----AKRPWQVKT---------------------IYKEMTDNGLSPNWNTYASLLRAYGR 203
                K+  +V                       +Y +M +    PN  TY  L+R +  
Sbjct: 383 LNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFAG 442

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           ++  +  L + ++M +K ++ +V  Y  L+ M   +G+ + A+++F++M   E C   S 
Sbjct: 443 SKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEM-VEEKCLTPSL 501

Query: 264 TFSSMITICSCR-GKVSEAEAMFNEMLEAGF 293
           +   M+     R G++ + E +  +M++ G 
Sbjct: 502 SLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 118/237 (49%), Gaps = 5/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G + +A  ++D     KW + P+  +F+TL+  Y   G+ D    +   M+A GV+P+
Sbjct: 148 KEGEMRLAQSVFDAI--TKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPD 205

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY+ L++ + +  R  +   ++ EM DNGL PN  T+ +L+  + +    +  + +YR
Sbjct: 206 VYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYR 265

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M  +G    V  YNTL+      G   +A  + ++M S +  +PD  T++++I      
Sbjct: 266 QMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEM-SRKGLKPDKITYTTLIDGSCKE 324

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           G +  A  +   M++     +  V T+LI    +  R  D  + L  +  +G+ PDD
Sbjct: 325 GDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDD 381



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 5/216 (2%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R D   FS LI  Y  +G     +  +   K    +    T  N+L+ + + K    V  
Sbjct: 63  RSDIYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWG 122

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL--SVYREMKEKGMQLSVTLYNTLLAM 235
            YKE+ + G   +   +  L+  +   + GE  L  SV+  + + G++ SV  +NTL+  
Sbjct: 123 FYKEILECGYPASLYFFNILMHRF--CKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              +G  DE F +   M++S   QPD +T+S +I       ++ EA  +F EML+ G  P
Sbjct: 181 YIKLGDLDEGFRLKNAMRAS-GVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVP 239

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           N    T+LI  + K  R D  +    ++   G +PD
Sbjct: 240 NGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPD 275



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 92/213 (43%), Gaps = 21/213 (9%)

Query: 137 FDGCLNV----------------YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           FD C NV                Y+E+   G   ++  +N L+    +       ++++ 
Sbjct: 101 FDTCRNVLEHLMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFD 160

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
            +T  GL P+  ++ +L+  Y +    ++   +   M+  G+Q  V  Y+ L+       
Sbjct: 161 AITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKES 220

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             DEA  +F +M  +    P+  TF+++I      G++  A  ++ +ML  GF P++   
Sbjct: 221 RMDEANGLFGEMLDN-GLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTY 279

Query: 301 TSLIQCYGKAQRTD--DVVRALNRLPELGITPD 331
            +LI  YG  ++ D       L+ +   G+ PD
Sbjct: 280 NTLI--YGLCKKGDLKQARYLLDEMSRKGLKPD 310


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 3/218 (1%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  ++PNA  F+TLI  +  A  F     ++ EM   GV P +  YN+L+D   R+    
Sbjct: 284 KSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQ 343

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   +Y+EMT  GL P+  T + ++R               + ++E G+ L+   YN L+
Sbjct: 344 EALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALI 403

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                +G  +EA      M +    +P+  ++SS+I   S RGK+  A A++ EM+  G 
Sbjct: 404 DEYCRIGNLEEALATCTRM-TEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGI 462

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EPN+   T+LI  + K    D   R    + E GI+P+
Sbjct: 463 EPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPN 500



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 4/208 (1%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A   L+      G  D  L V+  ++ +   P +   N +LD + +A+RP     ++ EM
Sbjct: 121 ALGVLVIALSQMGLLDEALYVFRRLRTL---PALPACNAVLDGLVKARRPGCAWELFDEM 177

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              GL P+  TY +L+ A            V+ +M  + +  +V  Y T++    + G  
Sbjct: 178 LRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCI 237

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +A  +F+ MK +   QP+ +T++ +++    R  V+ A  ++ E+L++G  PN  + T+
Sbjct: 238 GDAERLFDAMKEA-GMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTT 296

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
           LI  + KA+R  +       +P  G+ P
Sbjct: 297 LIDGFCKAKRFSEAKGMFLEMPRFGVAP 324



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 110/234 (47%), Gaps = 5/234 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G V  A  ++D+   ++  IDPN   ++T+I      G       +++ MK  G++PN  
Sbjct: 200 GTVAKAQEVWDQMVAQQ--IDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQY 257

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+    +         +Y+E+  +GL+PN   + +L+  + +A+   +   ++ EM
Sbjct: 258 TYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEM 317

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+  +V +YN+L+      G   EA  ++++M     C PD +T S ++      G+
Sbjct: 318 PRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLC-PDEFTCSIVVRGLCDGGQ 376

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  A+     + E G   N     +LI  Y +    ++ +    R+ E+GI P+
Sbjct: 377 MHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPN 430



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 18/226 (7%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G + +A       + +   ++  A++ LI  Y   GN +  L     M  +G++PN+++
Sbjct: 374 GGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVS 433

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y++L+D   +  +      IY EM   G+ PN  TY +L+  + +    +    +++EM 
Sbjct: 434 YSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMI 493

Query: 219 EKGMQLSVTLYNTLL-AMCAD------VGYTDE--------AFEIFEDMKSSENCQ-PDS 262
           E G+  +    + L+  +C +      V +  E           +F +    E C  P+S
Sbjct: 494 ENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNS 553

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI--QC 306
             + ++I      G+  EA  +F+ M ++G  P+ F  T LI  QC
Sbjct: 554 VIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQC 599



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 97/203 (47%), Gaps = 4/203 (1%)

Query: 139 GCL-NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           GC   +++EM   G+ P+++TYN L++         + + ++ +M    + PN  TY ++
Sbjct: 168 GCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTM 227

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           + A        D   ++  MKE GMQ +   YN L++        + A  +++++  S  
Sbjct: 228 ICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKS-G 286

Query: 258 CQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             P++  F+++I   C  + + SEA+ MF EM   G  P + V  SL+    ++    + 
Sbjct: 287 LNPNAVIFTTLIDGFCKAK-RFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEA 345

Query: 317 VRALNRLPELGITPDDRFCGCLL 339
           +     +  LG+ PD+  C  ++
Sbjct: 346 LALYQEMTRLGLCPDEFTCSIVV 368


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 1/220 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           DP  F  L+K Y   G        + ++  +G  P++I+ N LL+ + +  R  Q   +Y
Sbjct: 178 DPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVY 237

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KEM   G+ PN  T+  L   + +    +        M+E+G +  +  YNTL++     
Sbjct: 238 KEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRK 297

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D+AF ++  M    N  PD  ++++++      GKV EA  +F+ M+  G  P++  
Sbjct: 298 GRLDDAFYLYRIM-YRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVS 356

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             +LI  Y K  +  +    L+ +   GI PD   C  L+
Sbjct: 357 FNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLI 396



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 190 NWN--TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           NW+   +  L++AY R    ++  + +R++ E G   SV   N LL     +   D+ ++
Sbjct: 176 NWDPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQ 235

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           ++++M +     P+S+TF+ +  +    G V +       M E GFEP++    +LI CY
Sbjct: 236 VYKEM-ARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCY 294

Query: 308 GKAQRTDDVVRALNRLPELGITPD 331
            +  R DD       +    + PD
Sbjct: 295 CRKGRLDDAFYLYRIMYRRNVLPD 318



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 41/210 (19%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN+  F+ L  ++   G+ D   +  E M+  G +P+++TYN L+    R  R     
Sbjct: 245 IHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAF 304

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +Y+ M    + P+  +Y +L+    +     +   ++  M  +G+   +  +NTL+   
Sbjct: 305 YLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLIC-- 362

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              GY  E                               GK+ E+ ++ +EM+ +G  P+
Sbjct: 363 ---GYCKE-------------------------------GKMRESRSLLHEMIGSGICPD 388

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
                 LI+ Y K  R   +V ALN + EL
Sbjct: 389 KVTCQVLIEGYRKEAR---IVSALNLVVEL 415



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/288 (18%), Positives = 115/288 (39%), Gaps = 38/288 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+V+      +R   E +  D   ++TLI  Y   G  D    +Y  M    V P++++Y
Sbjct: 263 GDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSY 322

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGE-------- 208
             L++ + +  +  +   ++  M   GL+P+  ++ +L+  Y   G+ R           
Sbjct: 323 TALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIG 382

Query: 209 ------------------------DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
                                     L++  E++  G+ +S  +Y+ L+    + G    
Sbjct: 383 SGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFA 442

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  + + + S     P    ++ +I        +++A  + +EM     +P+     +LI
Sbjct: 443 AKSLLQRI-SQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALI 501

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
            C  +  R+ +    +  + + G+ PD   C  L++V  +  + ++GK
Sbjct: 502 CCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCK--ERDIGK 547



 Score = 42.0 bits (97), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 36/191 (18%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ LI+    + +    L V  EM    +KP+ ITY  L+  + R  R  + +++ +EM 
Sbjct: 462 YNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEML 521

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G+ P+ +   +L+  Y                KE+ +  + TL  T            
Sbjct: 522 QSGMLPDPDICRALMHVY---------------CKERDIGKAETLLQTF----------A 556

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           + F+IF           DS ++++++         +    + + ML+ GF PN+     +
Sbjct: 557 KEFQIF-----------DSESYNTLVKTYCEDADATRLMELQDRMLKVGFAPNIQTFRQM 605

Query: 304 IQCYGKAQRTD 314
           I    KA   +
Sbjct: 606 IHGLWKAMAVE 616


>gi|218191860|gb|EEC74287.1| hypothetical protein OsI_09537 [Oryza sativa Indica Group]
          Length = 689

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG+  +A  L  R       +D  +F+T+I LY   G     + V E M+  GVK +++
Sbjct: 284 KAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVV 343

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N+L+  + + +R  +   + +EM   G++P+  TY +L+  Y RA   E+ + +  EM
Sbjct: 344 TWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEM 403

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  GM   V  YN +L    + G   E   +  +M      Q D  T +++I     RG 
Sbjct: 404 EAMGMLPGVATYNAILRKLCEDGKMKEVNVLLNEM-DERKVQADHVTCNTLINAYCKRGD 462

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++ A  +   M+E+G + + F   +L+  + KA+  D+   AL  +   G +P+
Sbjct: 463 MTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPN 516



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 3/191 (1%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L V++ M+A  V P+    + LL  + +++     + ++ +MT  G++ N + Y ++L  
Sbjct: 222 LRVFDHMRAREVVPDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHV 281

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
             +A       S+   M   G+ L    +NT++A+    G   EA  + E M+ ++  + 
Sbjct: 282 CLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERME-NQGVKA 340

Query: 261 DSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           D  T++S+I  +C  R +V EA  +  EM  AG  P+    T+L+  Y +A   ++ V+ 
Sbjct: 341 DVVTWNSLIHGLCKER-RVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKL 399

Query: 320 LNRLPELGITP 330
              +  +G+ P
Sbjct: 400 RGEMEAMGMLP 410



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 7/215 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TL+  Y  AG+ +  + +  EM+A+G+ P + TYN +L  +    +  +V  + 
Sbjct: 376 DHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAILRKLCEDGKMKEVNVLL 435

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM +  +  +  T  +L+ AY +       L V R M E G+QL    Y  L+      
Sbjct: 436 NEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKA 495

Query: 240 GYTDEAFE-IFEDMKS--SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              DEA E +FE M +  S N    SW    +   C+    V+   A+ +E+++ GF P+
Sbjct: 496 KELDEAKEALFEMMGAGFSPNYSVLSWIVDGL---CNKNNAVA-VLAIPDELMKRGFPPD 551

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             V  SLI+   K    D      N +   G+  D
Sbjct: 552 KAVYRSLIRRLCKKGFIDLAGNVFNEMQGKGLEAD 586



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D+       ++ + ++ ++ +   AG+     ++   M A GV  +  ++N ++    
Sbjct: 259 VFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYC 318

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           R    ++   + + M + G+  +  T+ SL+    + R  ++   + REM   G+     
Sbjct: 319 RKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAPDHV 378

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y TL+      G  +EA ++  +M++     P   T+++++      GK+ E   + NE
Sbjct: 379 TYTTLVDGYCRAGDLEEAVKLRGEMEAM-GMLPGVATYNAILRKLCEDGKMKEVNVLLNE 437

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M E   + +     +LI  Y K       ++   R+ E G+  D
Sbjct: 438 MDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLD 481



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 1/174 (0%)

Query: 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
            K + D    +TLI  Y   G+    L V   M   G++ +  TY  L+    +AK   +
Sbjct: 441 RKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDE 500

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            K    EM   G SPN++  + ++            L++  E+ ++G      +Y +L+ 
Sbjct: 501 AKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIR 560

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
                G+ D A  +F +M+  +  + D   ++++       GK   A  + NEM
Sbjct: 561 RLCKKGFIDLAGNVFNEMQ-GKGLEADCLVYATLACAYLTAGKPVAALDILNEM 613



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 62/159 (38%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++  A  +  R      ++D   +  L+  +  A   D       EM   G  PN  
Sbjct: 459 KRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYS 518

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             + ++D +        V  I  E+   G  P+   Y SL+R   +  + +   +V+ EM
Sbjct: 519 VLSWIVDGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNVFNEM 578

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           + KG++    +Y TL       G    A +I  +M   +
Sbjct: 579 QGKGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQ 617


>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 564

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 117/250 (46%), Gaps = 11/250 (4%)

Query: 101 NVEMAF---GLYDRA-----RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI 150
           N+  AF   G  DRA       +K R  P    F  +I  +   G     L+V++ M+  
Sbjct: 163 NIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMS 222

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  P + TYN L+  +   ++  + + I  EMT  G+SPN +TY +++  Y         
Sbjct: 223 GCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKA 282

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
            + + +++++G+QL V  Y  LL  C   G    A  + ++M S++N   +++ ++ +I 
Sbjct: 283 FAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEM-SAQNIPRNTFIYNILID 341

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             + RG V EA  +  +M   G +P++   TS I    KA       + +  +  +G+ P
Sbjct: 342 GWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKP 401

Query: 331 DDRFCGCLLN 340
           + +    L+N
Sbjct: 402 NVKTYTTLIN 411



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 114/233 (48%), Gaps = 1/233 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N++ A  L      E      + + T++  Y   G+ D CL V+E  K  G+ P++ITY 
Sbjct: 33  NMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYG 92

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L++   +  +  +   + KEM   G+  N  TY+ L+  + + +   +  +++ ++ + 
Sbjct: 93  CLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKD 152

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++  V LYN ++     +G  D A    ++M+   + +P + TF  +I   + +G++ +
Sbjct: 153 GIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRH-KPTTRTFMPIIHGFARKGEMKK 211

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           A  +F+ M  +G  P +    +LI    + ++ +   + L+ +   G++P++ 
Sbjct: 212 ALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEH 264



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 8/230 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+   AF  + + R+E  ++D   +  L+K    +G     L V +EM A  +  N   Y
Sbjct: 277 GDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIY 336

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   R    W+   + ++M   G+ P+ +TY S + A  +A   +       EMK 
Sbjct: 337 NILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKS 396

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++ +V  Y TL+   A     ++A   FE+MK S   +PD   +  ++T    R  V+
Sbjct: 397 VGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLS-GLKPDRAVYHCLMTSLLSRATVA 455

Query: 280 EA------EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT-DDVVRALNR 322
                    ++  EM++     ++       +C  K +RT  ++  AL +
Sbjct: 456 HGCIYPGILSVCREMVDCELTVDMGTAVHWSKCLLKIERTGGEITEALQK 505



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 5/229 (2%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +++    +  + D   ++ +I  +   G  D  +   +EM+    KP   T+  ++ 
Sbjct: 142 AFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIH 201

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R     +   ++  M  +G  P  +TY +L+      R  E    +  EM   G+  
Sbjct: 202 GFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSP 261

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y T++   A +G T +AF  F  ++  E  Q D +T+ +++  C   G++  A A+
Sbjct: 262 NEHTYTTIMHGYASLGDTGKAFAYFTKLR-DEGLQLDVYTYEALLKACCKSGRMQSALAV 320

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTD--DVVRALNRLPELGITPD 331
             EM       N F+   LI   G A+R D  +    + ++   G+ PD
Sbjct: 321 TKEMSAQNIPRNTFIYNILID--GWARRGDVWEAADLMQQMKREGVQPD 367



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 6/126 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+V  A  L  + + E  + D + +++ I     AG+        EEMK++GVKPN+ 
Sbjct: 345 RRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVK 404

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGE-----DTL 211
           TY  L++   RA  P +  + ++EM  +GL P+   Y  L+ +   RA           L
Sbjct: 405 TYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGIL 464

Query: 212 SVYREM 217
           SV REM
Sbjct: 465 SVCREM 470



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 99/235 (42%), Gaps = 10/235 (4%)

Query: 109 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168
           +  A+ +   ++   +  +I  Y    N D    +  EM+  G+   +  Y+ ++D    
Sbjct: 6   FQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTM 65

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
                +   +++   + GL+P+  TY  L+  Y +       L V +EM+  G++ ++  
Sbjct: 66  VGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKT 125

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           Y+ L+     +     AF IFED+   +  +PD   ++++IT     GK+  A     EM
Sbjct: 126 YSMLINGFLKLKDWANAFAIFEDL-IKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEM 184

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            +   +P       +I  +    R  ++ +AL+    +      R  GC+  V T
Sbjct: 185 QKQRHKPTTRTFMPIIHGFA---RKGEMKKALDVFDMM------RMSGCIPTVHT 230


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG V+ A  + D  + +   ++PN   ++  I  Y      D   ++YEEM   GV P+
Sbjct: 221 RAGEVDAARDMVDTMKRDG--VEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPD 278

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++T + L+  + +  R  +   +++EM   G +PN  TY  L+    +A+ G ++LS+  
Sbjct: 279 VVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLG 338

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           E+  +G+ + + +Y  L+      G  DEA ++F     S+N  P+  T++ +I      
Sbjct: 339 EVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRH-ALSDNHTPNGVTYTVLIDALCKA 397

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G V  AE + +EM E    PN+   +S+I    K          +  + E GI P+
Sbjct: 398 GNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPN 453



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 1/213 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++T+I      G     L +   MK   +KPN+ITY+ L+  +  A    + K + 
Sbjct: 593 DQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLL 652

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM+ +G SP   T+  +L+A  + R  +  L ++  M   G+   +T+YNTL+ +    
Sbjct: 653 NEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYN 712

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G T +A  + E+M S     PD+ TF+++I      G +  A + +++ML  G  PN+  
Sbjct: 713 GMTRKAMVVLEEM-SGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVAT 771

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             +L+     A R  +    LN + + GI P +
Sbjct: 772 FNTLLGGLESAGRIGESDMVLNEMKKRGIEPSN 804



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+ LI  +  +G+ D   + Y++M   G+ PN+ T+N LL  +  A R  +   + 
Sbjct: 733 DTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVL 792

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM   G+ P+  TY  L+  YG+     + + +Y EM  KG    V+ YN L++  + V
Sbjct: 793 NEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKV 852

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A E+F +M+ +    P S T+  +++  S     +E      +M E GF P+   
Sbjct: 853 GMMSQAKELFNEMQ-NRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGT 911

Query: 300 LTSLIQCYGKAQRTDDVVRALNRL 323
           L+S+ + + K   + +  R L  L
Sbjct: 912 LSSISRAFSKPGMSWEARRLLKNL 935



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 114/271 (42%), Gaps = 40/271 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  ++  A ++    +   ++ LI     AGN DG   V  EM+   + PN++
Sbjct: 361 KEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVV 420

Query: 158 TYNNLLDTMGRAKRPWQVKTI--YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY- 214
           T++++++  G  KR W  K     +EM + G+ PN  TY +++    +    E  L VY 
Sbjct: 421 TFSSIIN--GLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYH 478

Query: 215 ----------------------------------REMKEKGMQLSVTLYNTLLAMCADVG 240
                                             REM E+G+ L    Y TL+      G
Sbjct: 479 EMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTG 538

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
               AF++ +++ + +N  PD+  ++  I      GK  EAE+   EM   G +P+    
Sbjct: 539 NLPAAFKVGQEL-TEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTY 597

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++I    +  +T   ++ LN +    I P+
Sbjct: 598 NTMIAAQSREGKTAKALKLLNGMKRSSIKPN 628



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 14/229 (6%)

Query: 110 DRARNEKWR-IDPNAFSTLIKLYGTA--GNF-----DGCLNVYEEMKAIGVKPNMITYNN 161
           D  R  K R IDPN  +     YGT   G+F     +  L+VY EM   GV+ N    ++
Sbjct: 440 DYMREMKERGIDPNVVT-----YGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDS 494

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L++ + +  +  + + +++EM + G+  +   Y +L+    +         V +E+ EK 
Sbjct: 495 LVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKN 554

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +     +YN  +     +G + EA    E+M+S+   +PD  T+++MI   S  GK ++A
Sbjct: 555 LLPDAVVYNVFINCLCMLGKSKEAESFLEEMQST-GLKPDQVTYNTMIAAQSREGKTAKA 613

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             + N M  +  +PNL   ++LI    +A   +     LN +   G +P
Sbjct: 614 LKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSP 662



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 38/249 (15%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +D   +++L+  Y   G+ +    V E MKA GV  +++ YN+L+  + RA      + +
Sbjct: 172 LDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDM 231

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA 237
              M  +G+ PN  TY   +  Y R    +D  S+Y EM  KG+   V   + L+  +C 
Sbjct: 232 VDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCK 291

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS------------------------ 273
           D G   EA+ +F +M+      P+  T+  +I   +                        
Sbjct: 292 D-GRFSEAYALFREMEKI-GAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDL 349

Query: 274 ----------CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
                     C+ GK+ EA+ MF   L     PN    T LI    KA   D   + L+ 
Sbjct: 350 IMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSE 409

Query: 323 LPELGITPD 331
           + E  I+P+
Sbjct: 410 MEEKSISPN 418



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 20/280 (7%)

Query: 79  WVNPKSPRASKLKEKSYDTRA---GNV----------EMAFGLYDRARNEKWRIDPNAFS 125
           WV   +    ++KE+  D      G V          E A  +Y     E   ++     
Sbjct: 434 WVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVD 493

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
           +L+      G  +    ++ EM   GV  + + Y  L+D + +         + +E+T+ 
Sbjct: 494 SLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEK 553

Query: 186 GLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            L P+   +N + + L   G+++  E   S   EM+  G++     YNT++A  +  G T
Sbjct: 554 NLLPDAVVYNVFINCLCMLGKSKEAE---SFLEEMQSTGLKPDQVTYNTMIAAQSREGKT 610

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +A ++   MK S + +P+  T+S++I      G V +A+ + NEM  +GF P       
Sbjct: 611 AKALKLLNGMKRS-SIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRR 669

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           ++Q   + +R+D ++     +   G+  D      L+ V+
Sbjct: 670 VLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVL 709



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 7/235 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  L+         +D   ++TLI      GN      V +E+    + P+ + Y
Sbjct: 503 GKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVY 562

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N  ++ +    +  + ++  +EM   GL P+  TY +++ A  R       L +   MK 
Sbjct: 563 NVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKR 622

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             ++ ++  Y+TL+    + G  ++A  +  +M SS    P S T   ++  CS +G+ S
Sbjct: 623 SSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEM-SSSGFSPTSLTHRRVLQACS-QGRRS 680

Query: 280 EAEAMFNE-MLEAGFEPNLFVLTSLIQ--CYGKAQRTDDVVRALNRLPELGITPD 331
           +     +E M+ AG   ++ V  +L++  CY    R   VV  L  +   GI PD
Sbjct: 681 DLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVV--LEEMSGRGIAPD 733



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 87/193 (45%), Gaps = 1/193 (0%)

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           D  L ++E M   G+  ++  YN L+  +       +   + +EM+  G++P+  T+ +L
Sbjct: 681 DLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNAL 740

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
           +  + ++ + ++  S Y +M   G+  +V  +NTLL      G   E+  +  +MK    
Sbjct: 741 ILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKK-RG 799

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            +P + T+  ++T    +    EA  ++ EM+  GF P +    +LI  + K        
Sbjct: 800 IEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAK 859

Query: 318 RALNRLPELGITP 330
              N +   G+ P
Sbjct: 860 ELFNEMQNRGVLP 872


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 40/246 (16%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ +TYN L D   R K   +   I ++M ++G++P   TY  +L+ + R+   +     
Sbjct: 208 PDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDF 267

Query: 214 YREMKEKG-----MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           + +MK++G      +  V  Y T+L      G  D+A ++F++M S E C P   T++++
Sbjct: 268 FLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEM-SREGCTPSIATYNAL 326

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I +   +G V +A A+F++M+  G+ PN+   T LI+    A + D  ++ L+++   G 
Sbjct: 327 IQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGC 386

Query: 329 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 388
            P+                         V+  N  +GY    L EE DIE     +A  L
Sbjct: 387 EPN-------------------------VQTYNVLIGY----LFEEGDIE-----KALHL 412

Query: 389 FNSISK 394
           F ++SK
Sbjct: 413 FETMSK 418



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 102/215 (47%), Gaps = 8/215 (3%)

Query: 98  RAGNVEMAFGLYDRAR-----NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           R+G ++ A+  + + +     +E  + D  +++T++   G AG  D    V++EM   G 
Sbjct: 257 RSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGC 316

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            P++ TYN L+    +         ++ +M   G  PN  TY  L+R    A   +  + 
Sbjct: 317 TPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMK 376

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +  +MK +G + +V  YN L+    + G  ++A  +FE M   E C P+  T++ +I+  
Sbjct: 377 LLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGEECLPNQDTYNIIISAM 436

Query: 273 SCRGKVSE---AEAMFNEMLEAGFEPNLFVLTSLI 304
             R +  +   A  M  EM++ G+ P  F+   ++
Sbjct: 437 FVRKRAEDMAVAARMVVEMVDRGYLPRRFMFNRVL 471


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 3/252 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+AG       ++   +   + +D  A++ ++  +  +G  D      EEMK   V P +
Sbjct: 70  TKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTV 129

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY +++D + +  R  +   +++E    G+  N   Y+SL+  +G+    ++   +  E
Sbjct: 130 ATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEE 189

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           M +KG+  +V  +N+L+         +EA   F+ MK  + C P+++T+S +I  +C  +
Sbjct: 190 MMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMK-CSPNTYTYSILINGLCRVQ 248

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            K ++A   + EM + G  PN+   T++I    K     D      R    G  PD    
Sbjct: 249 -KYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASF 307

Query: 336 GCLLNVMTQTPK 347
             L+  M+   +
Sbjct: 308 NALIEGMSHANR 319



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           +++EM   G +P++   N  +D + +A    + + I++++   G  P+  +Y+ L+    
Sbjct: 11  IFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLT 70

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +A    +T S++  MK++G  L    YN ++      G  D+A+E  E+MK  ++  P  
Sbjct: 71  KAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMK-VKHVPPTV 129

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T+ S+I   +   ++ EA  +F E    G E N+ V +SLI  +GK  R D+    L  
Sbjct: 130 ATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEE 189

Query: 323 LPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           + + G+ P+      L++ + +   EE+ + + C +
Sbjct: 190 MMKKGLAPNVYTWNSLMDALVKA--EEINEALICFQ 223



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A+++   ++   +S+LI  +G  G  D    + EEM   G+ PN+ T+N+L+D
Sbjct: 148 AYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMD 207

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M +   SPN  TY+ L+    R +        ++EM+++G+  
Sbjct: 208 ALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVP 267

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  Y T+++  A VG   +A  +FE  K++    PD+ +F+++I   S   +  EA  +
Sbjct: 268 NVVTYTTMISGLAKVGNITDACSLFERFKANGGI-PDAASFNALIEGMSHANRAIEAYHV 326

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           F E    G   N+    SL+    KA+
Sbjct: 327 FEETRLRGCRINVKACISLLDALNKAE 353



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 106/214 (49%), Gaps = 1/214 (0%)

Query: 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
           AG+ +    ++E++K  G  P++ +Y+ L+  + +A +  +  +I+  M   G + +   
Sbjct: 37  AGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARA 96

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           Y +++  + ++   +       EMK K +  +V  Y +++   A +   DEA+ +FE+ K
Sbjct: 97  YNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAK 156

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
            S+  + +   +SS+I      G++ EA  +  EM++ G  PN++   SL+    KA+  
Sbjct: 157 -SKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEI 215

Query: 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           ++ +     + E+  +P+      L+N + +  K
Sbjct: 216 NEALICFQSMKEMKCSPNTYTYSILINGLCRVQK 249



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 109/234 (46%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG+VE    +++  +   +  D  ++S LI     AG      +++  MK  G   +  
Sbjct: 36  KAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDAR 95

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN ++D   ++ +  +     +EM    + P   TY S++    +    ++   ++ E 
Sbjct: 96  AYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEA 155

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K KG++L+V +Y++L+     VG  DEA+ I E+M   +   P+ +T++S++       +
Sbjct: 156 KSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEM-MKKGLAPNVYTWNSLMDALVKAEE 214

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++EA   F  M E    PN +  + LI    + Q+ +        + + G+ P+
Sbjct: 215 INEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPN 268



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           ED   +++EM  +G Q  +TL NT +      G  ++   IFED+K      PD  ++S 
Sbjct: 6   EDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGY-GFLPDVRSYSI 64

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I   +  G+  E  ++F+ M + GF  +     +++  + K+ + D    AL  +    
Sbjct: 65  LIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKH 124

Query: 328 ITPDDRFCGCLLNVMTQTPK 347
           + P     G +++ + +  +
Sbjct: 125 VPPTVATYGSIIDGLAKIDR 144



 Score = 42.0 bits (97), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           +K  + PN   ++T+I      GN     +++E  KA G  P+  ++N L++ M  A R 
Sbjct: 261 QKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASFNALIEGMSHANRA 320

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +   +++E    G   N     SLL A  +A   E    V   ++E
Sbjct: 321 IEAYHVFEETRLRGCRINVKACISLLDALNKAECIEQAAVVGAVLRE 367


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 158/357 (44%), Gaps = 51/357 (14%)

Query: 112 ARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           AR +K  I P    ++TL+  Y   G      NV E M A G +P++ TYN L   + +A
Sbjct: 269 ARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQA 328

Query: 170 KRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 228
            +  +   +  EM   + +SP+  TY +L+ A  + +   D L++  EM++KG++ S+  
Sbjct: 329 GKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVT 388

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNE 287
           +N ++      G  +EA    + M + E   PD  T++++I   C  R  V++A  + +E
Sbjct: 389 HNIVVKGLCREGQLEEALGRLK-MMTEEGLAPDVITYNTLIDAYCKARN-VAKAFVLMDE 446

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           M+ +G + + F L +L+    K +R ++    L   P+ G  PD+   G ++    +  K
Sbjct: 447 MVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENK 506

Query: 348 EE------------------------------LGKLVECVEKSNSKL-----------GY 366
            E                              +GKL E ++K N  +             
Sbjct: 507 PEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNI 566

Query: 367 VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID-LCVNLNLLENACKLLE 422
           ++    +E D+E  F+     L N    DV    CN L++ LC++   LE A KL E
Sbjct: 567 IIHAYCKEGDLEKAFQFHNKMLENYFKPDV--VTCNTLMNGLCLH-GKLEKAIKLFE 620



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 2/216 (0%)

Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R+ PN   F+ L+  + + G     L+    M+  G+ P+++TYN LL    R     + 
Sbjct: 205 RLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEA 264

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           +T+   M   G++P   TY +L+ AY R  + +   +V   M   G +  +  YN L A 
Sbjct: 265 RTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAG 324

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  DEAF++ ++M+      PD  T+++++  C    + S+A  +  EM + G + 
Sbjct: 325 LCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKS 384

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +L     +++   +  + ++ +  L  + E G+ PD
Sbjct: 385 SLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPD 420



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 157/349 (44%), Gaps = 25/349 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +AG V+ AF L D   +    + P+   ++TL+            LN+ EEM+  GVK +
Sbjct: 327 QAGKVDEAFKLKDEMEHLSI-VSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSS 385

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++T+N ++  + R  +  +     K MT+ GL+P+  TY +L+ AY +AR       +  
Sbjct: 386 LVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMD 445

Query: 216 EMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           EM   G+++     NTLL  +C +  Y +EA E+           PD  ++ +++     
Sbjct: 446 EMVRSGLKMDTFTLNTLLYNLCKEKRY-EEAEELLRS-PPQRGFVPDEVSYGTVMAAYFK 503

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             K   A  +++EM +    P+++   +LI+      +  + +  LN L + G+ PDD  
Sbjct: 504 ENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTT 563

Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK-------LLLEEQDIEGDFKKEATE 387
              +++   +      G L +  +  N  L    K        L+    + G  +K A +
Sbjct: 564 YNIIIHAYCKE-----GDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEK-AIK 617

Query: 388 LFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436
           LF S ++  KK      +D+     L++  CK  ++   L  + D+++R
Sbjct: 618 LFESWAEKGKK------VDVITYNTLIQALCKDGDVDTALHFFADMEAR 660



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 2/189 (1%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L+V+  + A+ + PN  T+N L+ T           +    M   GLSP+  TY +LL+A
Sbjct: 195 LDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKA 254

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           + R     +  ++   MK++G+  +   YNTL++  A +G+  +A  + E M ++   +P
Sbjct: 255 HCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAM-TAFGFEP 313

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPNLFVLTSLIQCYGKAQRTDDVVRA 319
           D WT++ +       GKV EA  + +EM       P++    +L+    K QR+ D +  
Sbjct: 314 DLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNL 373

Query: 320 LNRLPELGI 328
           L  + + G+
Sbjct: 374 LEEMRDKGV 382



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 113/286 (39%), Gaps = 34/286 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +E A G       E    D   ++TLI  Y  A N      + +EM   G+K +  
Sbjct: 398 REGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTF 457

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N LL  + + KR  + + + +     G  P+  +Y +++ AY +    E  L ++ EM
Sbjct: 458 TLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEM 517

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM------------------------- 252
            ++ +  S+  YNTL+     +G   EA +   ++                         
Sbjct: 518 SKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDL 577

Query: 253 --------KSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                   K  EN  +PD  T ++++      GK+ +A  +F    E G + ++    +L
Sbjct: 578 EKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTL 637

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           IQ   K    D  +     +   G+ PD      +L+ +++  + E
Sbjct: 638 IQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSE 683



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKR--PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           V+P++   N +L  + R+    P     +++ +    L PN  T+  L+  +       D
Sbjct: 169 VRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLAD 228

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            LS    M+  G+   V  YNTLL      G   EA  +   MK  E   P   T+++++
Sbjct: 229 ALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMK-KEGIAPTRATYNTLV 287

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           +  +  G + +A  +   M   GFEP+L+    L     +A + D+  +  + +  L I 
Sbjct: 288 SAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIV 347

Query: 330 PDD 332
             D
Sbjct: 348 SPD 350



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/214 (18%), Positives = 90/214 (42%), Gaps = 37/214 (17%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  L++    +  ++D   ++TLI+     G+ D  L+ + +M+A G++P+  TY
Sbjct: 610 GKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTY 669

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +L  +  A R  + + +  ++ ++G      +Y  +  +    + G+D          
Sbjct: 670 NVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDP--------- 720

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ-PDSWTFSSMITICSCRGKV 278
                                      E+  D +S  N +  D  +++  +      G++
Sbjct: 721 ---------------------------EVKSDCESGGNAKGGDQESYNKSVKELCVGGQL 753

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
            EA+A+ +EM++ G   +     +L++   K Q+
Sbjct: 754 KEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQK 787


>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 456

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 15/284 (5%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYD------TRAGNVEMAFGLYDRARNE-KWRID 120
           GK     K+Y           ++  +SY       +R+G ++ AF + +  +N    + D
Sbjct: 111 GKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPDCQPD 170

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
            + +S LIK       F+    +  +M   G+KPN ITYN  +D  G+AK   ++++I  
Sbjct: 171 VHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESILV 230

Query: 181 EM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +M  D+G  P+  T  S LRA+GR+   E     Y + +E G+Q S+  +N LL      
Sbjct: 231 DMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKA 290

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWT---FSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              ++   + E M+        SWT   ++ +I      G + + E +F  M     +P+
Sbjct: 291 ESYEKMSAVMEYMQKYHY----SWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPS 346

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              L SL++ YG+A + + +   LN +    I  D  F  CL++
Sbjct: 347 CVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVD 390



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 1/144 (0%)

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           P    Y  L+   G+ +  E    +++EM E+G ++S   Y  LL+  +  G  DEAF I
Sbjct: 98  PYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSI 157

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
             +MK+S +CQPD  T+S +I  C      ++A+ + ++M+  G +PN     + I  YG
Sbjct: 158 LNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYG 217

Query: 309 KAQRTDDVVRAL-NRLPELGITPD 331
           KA+   ++   L + L + G  PD
Sbjct: 218 KAKMFAEMESILVDMLNDDGCKPD 241



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 1/187 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G +E     Y++ +    +     F+ L+  YG A +++    V E M+       ++
Sbjct: 254 RSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIV 313

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++D  GRA    Q++ +++ M    + P+  T  SL+RAYG+A   E   SV   +
Sbjct: 314 TYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLV 373

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +   + L    YN L+     +    E  ++   M     C+PD  T+ +M    S  G 
Sbjct: 374 ENSDIMLDTVFYNCLVDAYGRLECFAEMKKVL-GMMEQRGCKPDKTTYRTMARAYSDGGM 432

Query: 278 VSEAEAM 284
            + A+ +
Sbjct: 433 ANHAKEI 439



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +I  +G AGN     +++  M++  +KP+ +T  +L+   G+A +  ++ ++   + 
Sbjct: 315 YNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVE 374

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           ++ +  +   Y  L+ AYGR     +   V   M+++G +   T Y T+    +D G  +
Sbjct: 375 NSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDGGMAN 434

Query: 244 EAFEIFEDMKSSE---NCQPD 261
            A EI E + ++E     +PD
Sbjct: 435 HAKEIQELITTAEPSKRTRPD 455


>gi|307110337|gb|EFN58573.1| hypothetical protein CHLNCDRAFT_140730 [Chlorella variabilis]
          Length = 926

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 4/204 (1%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A++ L+ L G+ G     L VY  M+  G  P+++TYN L+               + +M
Sbjct: 374 AYNALLHLLGSIGQLQRSLGVYRGMRRRGPAPDVVTYNTLIAAAAHGGNVQAAMRTFSDM 433

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-- 240
            D  + P   T  +LL  Y +AR       V+  M + G++ ++ +Y +L+  C   G  
Sbjct: 434 VDADIEPTERTAGALLHCYAKARDAASARRVFEGMAQLGVRPNLEIYTSLIDACVQAGGK 493

Query: 241 -YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
            +T  AF++ E+M+  E   P + T+  ++  C   G V+ A A++ +  + G  P+  +
Sbjct: 494 QWTQFAFQLVEEMR-REGLAPSAVTYGCLLAACEKAGDVTRAFALYKQACDEGVAPSDQM 552

Query: 300 LTSLIQCYGKAQRTDDVVRALNRL 323
              LI    +A+R ++ V  + RL
Sbjct: 553 HDMLISMCTEAERLEEAVDLVKRL 576



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 6/201 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ + G+Y   R      D   ++TLI      GN    +  + +M    ++P   T 
Sbjct: 386 GQLQRSLGVYRGMRRRGPAPDVVTYNTLIAAAAHGGNVQAAMRTFSDMVDADIEPTERTA 445

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVYRE 216
             LL    +A+     + +++ M   G+ PN   Y SL+ A    G  ++ +    +  E
Sbjct: 446 GALLHCYAKARDAASARRVFEGMAQLGVRPNLEIYTSLIDACVQAGGKQWTQFAFQLVEE 505

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+ +G+  S   Y  LLA C   G    AF +++     E   P       +I++C+   
Sbjct: 506 MRREGLAPSAVTYGCLLAACEKAGDVTRAFALYKQ-ACDEGVAPSDQMHDMLISMCTEAE 564

Query: 277 KVSEAEAMFNEMLEA--GFEP 295
           ++ EA  +   +  +  G +P
Sbjct: 565 RLEEAVDLVKRLARSSPGAQP 585



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 127/349 (36%), Gaps = 62/349 (17%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMT--DNGLSPNW 191
           G+    L  ++EM+A GV PN    + L      A   P Q+  ++  +    +   PN 
Sbjct: 227 GDAAWLLRTWDEMEAAGVAPNNYVVSALFSAASHAPCTPAQLDRLFAALALLRSFGPPND 286

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA-------------- 237
             Y SLL    R    E  + V+  +K+ G++ +  LY++L A CA              
Sbjct: 287 TVYTSLLTLIQRQAIQERAVDVWTAVKQDGVRQTPHLYSSLFAACAPGASPALVEVALEA 346

Query: 238 -------------------------------------DVGYTDEAFEIFEDMKSSENCQP 260
                                                 +G    +  ++  M+      P
Sbjct: 347 ADAMQDSWQECVARSQPRPHYERDMLVAYNALLHLLGSIGQLQRSLGVYRGMRR-RGPAP 405

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  T++++I   +  G V  A   F++M++A  EP      +L+ CY KA+      R  
Sbjct: 406 DVVTYNTLIAAAAHGGNVQAAMRTFSDMVDADIEPTERTAGALLHCYAKARDAASARRVF 465

Query: 321 NRLPELGITPDDRFCGCLLNVMTQTPKEELG----KLVECVEKSNSKLGYVV-KLLLEEQ 375
             + +LG+ P+      L++   Q   ++      +LVE + +       V    LL   
Sbjct: 466 EGMAQLGVRPNLEIYTSLIDACVQAGGKQWTQFAFQLVEEMRREGLAPSAVTYGCLLAAC 525

Query: 376 DIEGDFKKEATELFNSISKDVKKA--YCNCLIDLCVNLNLLENACKLLE 422
           +  GD  +       +  + V  +    + LI +C     LE A  L++
Sbjct: 526 EKAGDVTRAFALYKQACDEGVAPSDQMHDMLISMCTEAERLEEAVDLVK 574



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 18/207 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--KAIGVKPN 155
           +AG+V  AF LY +A +E           LI +   A   +  +++ + +   + G +P 
Sbjct: 527 KAGDVTRAFALYKQACDEGVAPSDQMHDMLISMCTEAERLEEAVDLVKRLARSSPGAQPV 586

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
                      G A             T  GL  + +T  SL+RA    +Y +  L +  
Sbjct: 587 GGGGGGGRSVDGGAT------------TSGGL--HEHTLNSLIRALC-GKYVDRALRLLS 631

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
             +  GM+ S   Y +L+  CA    +  +++++  +++ +  + D+ + S++IT     
Sbjct: 632 LCQTMGMRPSRRTYLSLITGCAKASRSAASYDLYRSLRA-QGMEADAASGSALITSLCHA 690

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            ++  AE ++N+ML   +   L  L +
Sbjct: 691 NQLEVAETVYNDMLACAWRRELHTLPA 717



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 10/144 (6%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNT 193
           GN++    V   M+  G++ ++ITYN+L+     A   P  V+T Y+E+   GL P   T
Sbjct: 155 GNWEAAQEVVSIMEREGIQRDVITYNSLIKAAAAAGLLPHAVRT-YRELAAAGLRPTTFT 213

Query: 194 YASLLRAYGRARYGEDT--LSVYREMKEKGMQLSVTLYNTLLAMCADVGYT----DEAFE 247
           YA+L  A  +AR+G+    L  + EM+  G+  +  + + L +  +    T    D  F 
Sbjct: 214 YAALFTAAAKARHGDAAWLLRTWDEMEAAGVAPNNYVVSALFSAASHAPCTPAQLDRLFA 273

Query: 248 IFEDMKSSENCQPDSWTFSSMITI 271
               ++S     P+   ++S++T+
Sbjct: 274 ALALLRSFGP--PNDTVYTSLLTL 295



 Score = 38.5 bits (88), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 21/195 (10%)

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           + LD   RA   ++ +T+  E+ +  +S   N         G     ++ +S+   M+ +
Sbjct: 124 DALDVFCRAWEQYECRTV--EVANAAISACANQ--------GNWEAAQEVVSI---MERE 170

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC--RGKV 278
           G+Q  V  YN+L+   A  G    A   + ++ ++   +P ++T++++ T  +    G  
Sbjct: 171 GIQRDVITYNSLIKAAAAAGLLPHAVRTYRELAAA-GLRPTTFTYAALFTAAAKARHGDA 229

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT----DDVVRALNRLPELGITPDDRF 334
           +     ++EM  AG  PN +V+++L      A  T    D +  AL  L   G  P+D  
Sbjct: 230 AWLLRTWDEMEAAGVAPNNYVVSALFSAASHAPCTPAQLDRLFAALALLRSFG-PPNDTV 288

Query: 335 CGCLLNVMTQTPKEE 349
              LL ++ +   +E
Sbjct: 289 YTSLLTLIQRQAIQE 303


>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 511

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 120/249 (48%), Gaps = 9/249 (3%)

Query: 97  TRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +R+G ++ AF + +  +N    + D + +S LIK       F+    +  +M   G+KPN
Sbjct: 201 SRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPN 260

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
            ITYN  +D  G+AK   ++++I  +M  D+G  P+  T  S LRA+GR+   E     Y
Sbjct: 261 TITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCY 320

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT---FSSMITI 271
            + +E G+Q S+  +N LL         ++   + E M+        SWT   ++ +I  
Sbjct: 321 EKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHY----SWTIVTYNIVIDA 376

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               G + + E +F  M     +P+   L SL++ YG+A + + +   LN +    I  D
Sbjct: 377 FGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLD 436

Query: 332 DRFCGCLLN 340
             F  CL++
Sbjct: 437 TVFYNCLVD 445



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 1/144 (0%)

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
           P    Y  L+   G+ +  E    +++EM E+G ++S   Y  LL+  +  G  DEAF I
Sbjct: 153 PYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSI 212

Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
             +MK+S +CQPD  T+S +I  C      ++A+ + ++M+  G +PN     + I  YG
Sbjct: 213 LNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYG 272

Query: 309 KAQRTDDVVRAL-NRLPELGITPD 331
           KA+   ++   L + L + G  PD
Sbjct: 273 KAKMFAEMESILVDMLNDDGCKPD 296



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 36/210 (17%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMITYNN 161
           E A+ L+     E   +   +++ L+  Y  +G  D   ++  EMK +   +P++ TY+ 
Sbjct: 172 EKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPDCQPDVHTYSI 231

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+ +  +     + +T+  +M   G+ PN  TY + + AYG+A+       ++ EM+   
Sbjct: 232 LIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAK-------MFAEMES-- 282

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
                                     I  DM + + C+PD WT +S +      G++   
Sbjct: 283 --------------------------ILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETM 316

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           E  + +  EAG +P++     L+  YGKA+
Sbjct: 317 EKCYEKFQEAGIQPSIQTFNILLDSYGKAE 346



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 1/187 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G +E     Y++ +    +     F+ L+  YG A +++    V E M+       ++
Sbjct: 309 RSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIV 368

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++D  GRA    Q++ +++ M    + P+  T  SL+RAYG+A   E   SV   +
Sbjct: 369 TYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLV 428

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +   + L    YN L+     +    E  ++   M     C+PD  T+ +M    S  G 
Sbjct: 429 ENSDIMLDTVFYNCLVDAYGRLECFAEMKKVL-GMMEQRGCKPDKTTYRTMARAYSDGGM 487

Query: 278 VSEAEAM 284
            + A+ +
Sbjct: 488 ANHAKEI 494



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +I  +G AGN     +++  M++  +KP+ +T  +L+   G+A +  ++ ++   + 
Sbjct: 370 YNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVE 429

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           ++ +  +   Y  L+ AYGR     +   V   M+++G +   T Y T+    +D G  +
Sbjct: 430 NSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDGGMAN 489

Query: 244 EAFEIFEDMKSSE---NCQPD 261
            A EI E + ++E     +PD
Sbjct: 490 HAKEIQELITTAEPSKRTRPD 510


>gi|111154024|dbj|BAF02664.1| pentatricopeptide repeat protein [Physcomitrella patens]
 gi|111185880|dbj|BAF02672.1| pentatricopeptide repeat protein [Physcomitrella patens]
          Length = 531

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 1/213 (0%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +D   ++ L+  YG AG  D    + E MKA GV+ +   YN L++   +A+ P + + +
Sbjct: 282 VDDRPYAALVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTLINIHSKAEAPEKARAV 341

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            + M  +G   +  TY S++ AY R +      S+  EMK  G+Q     Y  L++    
Sbjct: 342 LQLMQADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQPGPVSYGVLISAYCR 401

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   +A  I   M++++ C+P    ++ MI+  +     S+AE MF  M + G  P+  
Sbjct: 402 AGRLGDAERILRAMQNAK-CKPTVEIYNMMISGYASAKMRSQAERMFQTMQDCGLRPDAV 460

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +LI  Y K+++         R+ +LG  P+
Sbjct: 461 TFNTLISMYIKSRKRKQAEDCYIRMQQLGCKPN 493



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI ++  A   +    V + M+A G + + ITY ++++   R K+P   +++  EM 
Sbjct: 322 YNTLINIHSKAEAPEKARAVLQLMQADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMK 381

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ P   +Y  L+ AY RA    D   + R M+    + +V +YN +++  A      
Sbjct: 382 RAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKMRS 441

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  +F+ M+     +PD+ TF+++I++     K  +AE  +  M + G +PN      L
Sbjct: 442 QAERMFQTMQDC-GLRPDAVTFNTLISMYIKSRKRKQAEDCYIRMQQLGCKPNAVTYKIL 500

Query: 304 IQCYGKAQRTDDVVRALNRLPELGIT 329
           ++ Y     + D  R    + + GI+
Sbjct: 501 LKAYTDYNNSIDAERIRLDMRKAGIS 526



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 37/259 (14%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++ R +  +   D    + LI  YG  G      +  +  +A G++P+ I Y  L+    
Sbjct: 202 VFSRMQRNRCPPDLKLCTVLISTYGNGGLPVLAESAMQYAQAQGLQPDAIAYTALVHAYA 261

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     + +    +M D G+  +   YA+L+ AYG+A   ++   +   MK  G++ S T
Sbjct: 262 QEGLWEEAEKTLSDMLDVGIVDD-RPYAALVAAYGKAGLTDNVNKILETMKASGVEASTT 320

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           LYNTL+ + +     ++A  + + M++ + CQ D  T++S++   S   +   AE+M  E
Sbjct: 321 LYNTLINIHSKAEAPEKARAVLQLMQA-DGCQCDEITYTSVMEAYSRNKQPLMAESMMGE 379

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDD---VVRALNR---------------------- 322
           M  AG +P       LI  Y +A R  D   ++RA+                        
Sbjct: 380 MKRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKM 439

Query: 323 ----------LPELGITPD 331
                     + + G+ PD
Sbjct: 440 RSQAERMFQTMQDCGLRPD 458



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 128/327 (39%), Gaps = 86/327 (26%)

Query: 73  SPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 132
           SP S    NPK P  + L+  S+ +RA     AF +     +  +  D +  ++ +K Y 
Sbjct: 99  SPSSLPEGNPK-PCQNPLR--SWGSRA-----AFTIVQATSSSDYLEDDSQLNS-VKDYN 149

Query: 133 TA-------GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
           +A       G     + +++  +  G+KP++++Y  L+   G+ K   +V  ++  M  N
Sbjct: 150 SALLNCVKDGRMRDAMTIFKRFEGAGLKPDVVSYTALIQGFGKLKSYNKVTDVFSRMQRN 209

Query: 186 -----------------------------------GLSPNWNTYASLLRAYGR------- 203
                                              GL P+   Y +L+ AY +       
Sbjct: 210 RCPPDLKLCTVLISTYGNGGLPVLAESAMQYAQAQGLQPDAIAYTALVHAYAQEGLWEEA 269

Query: 204 ----------------------ARYGEDTLS-----VYREMKEKGMQLSVTLYNTLLAMC 236
                                 A YG+  L+     +   MK  G++ S TLYNTL+ + 
Sbjct: 270 EKTLSDMLDVGIVDDRPYAALVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTLINIH 329

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           +     ++A  + + M+ ++ CQ D  T++S++   S   +   AE+M  EM  AG +P 
Sbjct: 330 SKAEAPEKARAVLQLMQ-ADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQPG 388

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRL 323
                 LI  Y +A R  D  R L  +
Sbjct: 389 PVSYGVLISAYCRAGRLGDAERILRAM 415



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 2/196 (1%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN+ L    +  R     TI+K     GL P+  +Y +L++ +G+ +       V+  M+
Sbjct: 148 YNSALLNCVKDGRMRDAMTIFKRFEGAGLKPDVVSYTALIQGFGKLKSYNKVTDVFSRMQ 207

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
                  + L   L++   + G    A E       ++  QPD+  +++++   +  G  
Sbjct: 208 RNRCPPDLKLCTVLISTYGNGGLPVLA-ESAMQYAQAQGLQPDAIAYTALVHAYAQEGLW 266

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            EAE   ++ML+ G   +     +L+  YGKA  TD+V + L  +   G+         L
Sbjct: 267 EEAEKTLSDMLDVGIVDDR-PYAALVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTL 325

Query: 339 LNVMTQTPKEELGKLV 354
           +N+ ++    E  + V
Sbjct: 326 INIHSKAEAPEKARAV 341



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 65/152 (42%)

Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           MA  +    +    +  P ++  LI  Y  AG       +   M+    KP +  YN ++
Sbjct: 372 MAESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMI 431

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
                AK   Q + +++ M D GL P+  T+ +L+  Y ++R  +     Y  M++ G +
Sbjct: 432 SGYASAKMRSQAERMFQTMQDCGLRPDAVTFNTLISMYIKSRKRKQAEDCYIRMQQLGCK 491

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
            +   Y  LL    D   + +A  I  DM+ +
Sbjct: 492 PNAVTYKILLKAYTDYNNSIDAERIRLDMRKA 523



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 60/127 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG +  A  +    +N K +     ++ +I  Y +A        +++ M+  G++P+ +
Sbjct: 401 RAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKMRSQAERMFQTMQDCGLRPDAV 460

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+    ++++  Q +  Y  M   G  PN  TY  LL+AY       D   +  +M
Sbjct: 461 TFNTLISMYIKSRKRKQAEDCYIRMQQLGCKPNAVTYKILLKAYTDYNNSIDAERIRLDM 520

Query: 218 KEKGMQL 224
           ++ G+ L
Sbjct: 521 RKAGISL 527



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 245 AFEIFEDMKSSENCQPDSW-----TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           AF I +   SS+  + DS       ++S +  C   G++ +A  +F     AG +P++  
Sbjct: 123 AFTIVQATSSSDYLEDDSQLNSVKDYNSALLNCVKDGRMRDAMTIFKRFEGAGLKPDVVS 182

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            T+LIQ +GK +  + V    +R+      PD + C  L++
Sbjct: 183 YTALIQGFGKLKSYNKVTDVFSRMQRNRCPPDLKLCTVLIS 223


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 5/265 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G    A  L++  R    +    A++ L+K Y   G       +  EM+  GV P+  T
Sbjct: 319 SGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHT 378

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ L+D    A R    + + KEM    + PN   ++ LL  Y      + T  V +EMK
Sbjct: 379 YSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMK 438

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
             G++     YN ++         D A   F+ M  SE  +PD  T++++I  C C+ G+
Sbjct: 439 SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRML-SEGIEPDRVTWNTLID-CHCKHGR 496

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
              AE MF  M   G  P       +I  YG  +R DD+ R L ++   GI P+      
Sbjct: 497 HIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTT 556

Query: 338 LLNVMTQTPKEELGKLVECVEKSNS 362
           L++V  ++ +      +EC+E+  S
Sbjct: 557 LVDVYGKSGR--FNDAIECLEEMKS 579



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 80  VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 139
           V P S   S+L     D   G  +  F +    ++   + D   ++ +I  +G     D 
Sbjct: 407 VQPNSFVFSRLLAGYRDR--GEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 464

Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
            +  ++ M + G++P+ +T+N L+D   +  R    + +++ M   G  P   TY  ++ 
Sbjct: 465 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMIN 524

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
           +YG     +D   +  +MK +G+  +V  + TL+ +    G  ++A E  E+MKS    +
Sbjct: 525 SYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSV-GLK 583

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           P S  ++++I   + RG   +A   F  M   G +P+L  L SLI  +G+ +R  +    
Sbjct: 584 PSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAV 643

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQTPK 347
           L  + E G+ PD      L+  + +  K
Sbjct: 644 LQYMKENGVKPDVVTYTTLMKALIRVDK 671



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 4/247 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A   +DR  +E    D   ++TLI  +   G       ++E M+  G  P   TYN 
Sbjct: 462 LDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNI 521

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++++ G  +R   +K +  +M   G+ PN  T+ +L+  YG++    D +    EMK  G
Sbjct: 522 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG 581

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ S T+YN L+   A  G +++A   F  M +S+  +P     +S+I       + +EA
Sbjct: 582 LKPSSTMYNALINAYAQRGLSEQAVNAFRVM-TSDGLKPSLLALNSLINAFGEDRRDAEA 640

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL--- 338
            A+   M E G +P++   T+L++   +  +   V      +   G  PD +    L   
Sbjct: 641 FAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPGVYEEMIMSGCKPDRKARSMLRSA 700

Query: 339 LNVMTQT 345
           L  M QT
Sbjct: 701 LRYMKQT 707



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 9/235 (3%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN+F  S L+  Y   G +     V +EMK+IGVKP+   YN ++DT G+        
Sbjct: 407 VQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAM 466

Query: 177 TIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           T +  M   G+ P+   WNT       +GR    E+   ++  M+ +G     T YN ++
Sbjct: 467 TTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE---MFEAMERRGCLPCATTYNIMI 523

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
               D    D+   +   MKS +   P+  T ++++ +    G+ ++A     EM   G 
Sbjct: 524 NSYGDQERWDDMKRLLGKMKS-QGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGL 582

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           +P+  +  +LI  Y +   ++  V A   +   G+ P       L+N   +  ++
Sbjct: 583 KPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRD 637



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 116/267 (43%), Gaps = 7/267 (2%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL--SVY 214
           +TYN L+    R     +   +   M  +G   ++  Y+ ++++  R    +  +   +Y
Sbjct: 200 LTYNALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLY 259

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           +E++   ++L V L N ++   A  G    A ++   M  +      + T  S+I+  + 
Sbjct: 260 KEIERDKLELDVQLVNDIIMGFAKSGDPSRALQLL-GMAQATGLSAKTATLVSIISALAN 318

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+  EAEA+F E+ ++G +P      +L++ Y K     D    ++ + + G++PD+  
Sbjct: 319 SGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHT 378

Query: 335 CGCLLNVMTQTPKEELGKLV--ECVEKSNSKLGYVVKLLLEEQDIEGDFKK--EATELFN 390
              L++      + E  ++V  E          +V   LL      G+++K  +  +   
Sbjct: 379 YSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMK 438

Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENA 417
           SI     + + N +ID     N L++A
Sbjct: 439 SIGVKPDRQFYNVVIDTFGKFNCLDHA 465


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 7/250 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G VE AF + +   +     D  +++  I+   + G  +    V+E M   G KP+M TY
Sbjct: 317 GKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTY 376

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             ++D   +         + + M    + PN   Y  ++  + ++   E+ L +Y+ + +
Sbjct: 377 GIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILK 436

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKV 278
            G+  S   YNT++     +   DEA E+  +M +  E  +P   T+S +I      GKV
Sbjct: 437 DGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMII---HGLGKV 493

Query: 279 SEAEAMFN---EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
              E  F+   EM++ G  P+ F  TSLIQ    A +    +  L  + + GI PDD   
Sbjct: 494 GMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTY 553

Query: 336 GCLLNVMTQT 345
           G L+ ++ ++
Sbjct: 554 GTLVQILCRS 563



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 137/320 (42%), Gaps = 45/320 (14%)

Query: 120 DPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +P  F+  + + G   A   +   +V+EEM   G KP++I Y++L+D + +A R  + + 
Sbjct: 195 EPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARK 254

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +   M   G  P    Y S++    +    ++ +   +EM+ + ++  V  Y+ ++    
Sbjct: 255 LVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYI 314

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            +G  ++AF + E+M +  +C PD+ +++  I      G+  EAE +F  M+E G +P++
Sbjct: 315 GMGKVEKAFAVMEEM-ADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDM 373

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
                +I  + K          L  + +  + P+      +++                 
Sbjct: 374 HTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMD----------------- 416

Query: 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENA 417
                  G+V    LE          EA EL+  I KD        ++   V  N + NA
Sbjct: 417 -------GFVKSSRLE----------EALELYQRILKD-------GILPSTVTYNTVINA 452

Query: 418 -CKLLELGLTLEVYTDIQSR 436
            CKL ++   LE+  ++Q R
Sbjct: 453 LCKLKKMDEALELLREMQRR 472



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 111/250 (44%), Gaps = 1/250 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  VE A  +++    + ++ D  A+S+LI     AG  D    + + M A G  P  +
Sbjct: 210 KAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAV 269

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y +++  + +  R  +     +EM    L P  +TY+ ++  Y      E   +V  EM
Sbjct: 270 AYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEM 329

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++        Y   +     +G  +EA ++FE M   + C+PD  T+  +I      G 
Sbjct: 330 ADRDCAPDTISYTMFIEALYSIGRREEAEKVFETM-VEKGCKPDMHTYGIIIDNFCKEGS 388

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           ++ A  +   M +A  +PN ++ T ++  + K+ R ++ +    R+ + GI P       
Sbjct: 389 MAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNT 448

Query: 338 LLNVMTQTPK 347
           ++N + +  K
Sbjct: 449 VINALCKLKK 458



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 89/193 (46%), Gaps = 6/193 (3%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           +K  + PN   ++ ++  +  +   +  L +Y+ +   G+ P+ +TYN +++ + + K+ 
Sbjct: 400 DKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKM 459

Query: 173 WQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
            +   + +EM      L P+  TY+ ++   G+    E    +  EM + G+      Y 
Sbjct: 460 DEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYT 519

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           +L+   A  G    A E+ E+M  +    PD  T+ +++ I  CR  V  A  +  EM+ 
Sbjct: 520 SLIQTLAGAGKVSRAMELLEEMLKA-GIFPDDHTYGTLVQIL-CRSDVDAAWDLLQEMMR 577

Query: 291 AGFEPNLFVLTSL 303
            G  PN F   ++
Sbjct: 578 NGHTPNEFTFKAV 590


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 128/285 (44%), Gaps = 20/285 (7%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYD---TRAGNVEMAFGLYDRARNEKWRIDPNAFS 125
           K+G + ++Y ++  K    +K+   S     ++AGN + A  L ++  NE  + D   +S
Sbjct: 575 KSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYS 634

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
            L++        +  L++ ++M   GVK N++ Y  ++  M +  +    K+++ EM  +
Sbjct: 635 VLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISS 694

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G  P+  TY   + +Y +    E+   +  EM+  G+   V  YN  +  C  +GY D A
Sbjct: 695 GHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRA 754

Query: 246 FEIFEDMKSSENCQPDSWTF----SSMITICSCRGKVSEAEAMFN------------EML 289
           F   + M  + +C+P+ WT+       + +        +   M+N             M+
Sbjct: 755 FSTLKRMVDA-SCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMM 813

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           + G  P +   +S+I  + KA R ++    L+ +    I+P++  
Sbjct: 814 KHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEI 858



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 2/247 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++ +A   +   R    ++D    + L+  Y    +      +   M  +G + N  
Sbjct: 191 KKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEY 250

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L+  +  A+   +   +   M  +G S N +TY  L++   +     D   +  EM
Sbjct: 251 SYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEM 310

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+  SV  YN ++      G   +A  I   M+ +  C PD WT++S+I    C GK
Sbjct: 311 PLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQN-GCNPDDWTYNSLI-YGLCGGK 368

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EAE + N  +  GF P +   T+LI  Y KA+R DD +R  + +       D +  G 
Sbjct: 369 LDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGV 428

Query: 338 LLNVMTQ 344
           L+NV+ +
Sbjct: 429 LINVLIK 435



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 36/226 (15%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ LI  Y  A   D  L V   M +   K ++  Y  L++ + +  R  + K    EM 
Sbjct: 391 FTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMF 450

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            NGL+PN  TY S++  Y +                 GM                VG   
Sbjct: 451 ANGLAPNVVTYTSIIDGYCKV----------------GM----------------VGAAL 478

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           E F++ E     E C P++WT+ S+I       K+ +A A+  +M E G  P +   T+L
Sbjct: 479 EVFKLME----HEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTL 534

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           IQ   K    D+  R    + + G+TPD++    L + + ++ + E
Sbjct: 535 IQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAE 580



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 114/276 (41%), Gaps = 5/276 (1%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           ++D  A+  LI +               EM A G+ PN++TY +++D   +         
Sbjct: 420 KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALE 479

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++K M   G  PN  TY SL+    + +     +++  +M+E G+   V  Y TL+    
Sbjct: 480 VFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQC 539

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
                D AF +FE M+ +    PD   ++ ++T   C  K   AE  ++ ++  G     
Sbjct: 540 KKHEFDNAFRLFEMMEQN-GLTPDEQAYN-VLTDALC--KSGRAEEAYSFLVRKGVVLTK 595

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356
              TSL+  + KA  TD     + ++   G   D      LL  + +  K  E   +++ 
Sbjct: 596 VTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQ 655

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           +  S  K   V   ++  + I+      A  LFN +
Sbjct: 656 MTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEM 691



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 6/231 (2%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           ++ + ++ LIK     G       + +EM   GV P++ TYN ++D   ++ R      I
Sbjct: 282 LNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGI 341

Query: 179 YKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
              M  NG +P+  TY SL+     G+    E+ L+       +G   +V  +  L+   
Sbjct: 342 KALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEELLN---GAIARGFTPTVITFTNLINGY 398

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                 D+A  +  +M SS NC+ D   +  +I +   + ++ EA+   NEM   G  PN
Sbjct: 399 CKAERIDDALRVKSNMISS-NCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPN 457

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           +   TS+I  Y K       +     +   G  P+    G L+  + Q  K
Sbjct: 458 VVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKK 508



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 90/216 (41%), Gaps = 17/216 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L++   +   +     ++  I  Y   G  +   ++  EM+  GV P+++
Sbjct: 677 KEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVV 736

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-----ARYGEDT-- 210
           TYN  ++  G      +  +  K M D    PN  TY  LL+ + +     A Y + +  
Sbjct: 737 TYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGM 796

Query: 211 ---------LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
                      +   M + G+  +V  Y++++A        +EA  + + M   ++  P+
Sbjct: 797 WNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLG-KDISPN 855

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
              ++ +I  C       +A +   +M+E GF+P L
Sbjct: 856 EEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQL 891



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 48/108 (44%)

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           E M   G+ P ++TY++++    +A R  +   +   M    +SPN   Y  L++     
Sbjct: 810 ERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDI 869

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           +     +S   +M E G Q  +  Y+ L+    D G  D A  +F D+
Sbjct: 870 KLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDL 917



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 23/218 (10%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  L      +    D   ++  I   G  G  D   +  + M     +PN  
Sbjct: 712 KIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCW 771

Query: 158 TYNNLL--------------DTMG-----RAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           TY  LL              DT G          WQ   + + M  +GL+P   TY+S++
Sbjct: 772 TYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQ---LLERMMKHGLNPTVVTYSSII 828

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             + +A   E+   +   M  K +  +  +Y  L+  C D+    +A     DM      
Sbjct: 829 AGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEF-GF 887

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           QP   ++  +I      G    A+++F ++L   +  N
Sbjct: 888 QPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHN 925


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 141/295 (47%), Gaps = 23/295 (7%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           ++LIK +G  G  +  L V+ +MK  G++P + TYN L++ +  A      + +++ M  
Sbjct: 191 NSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 250

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
             + P+  TY ++++ Y +A   +  L   R M+ KG++     Y T++  C    Y D 
Sbjct: 251 GRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQAC----YADS 306

Query: 245 AFE----IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            F     ++++M   +  Q     FS +I      GK++E  A+F  M+  G +PN+ + 
Sbjct: 307 DFSSCVALYQEM-DEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIY 365

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE-- 358
           T LI  Y K    +D +R L+R+ + G  PD      ++N + +      G++ E ++  
Sbjct: 366 TVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKN-----GRVEEAMDYF 420

Query: 359 KSNSKLGYVVKLLLEEQDIEGDFK----KEATELFNSISKD--VKKAYC-NCLID 406
           ++    G  +  +     I+G  K     EA  LF  +S+    + +YC N LID
Sbjct: 421 QTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALID 475



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 107/225 (47%), Gaps = 2/225 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
            LY     +  ++ P+AFS +I      G  +    V+E M   G KPN+  Y  L+D  
Sbjct: 313 ALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGY 372

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +         +   M D G +P+  TY+ ++    +    E+ +  ++  +  G+ ++ 
Sbjct: 373 AKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINS 432

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y++L+      G  DEA  +FE+M S + C  DS+ ++++I   +  GKV EA A+F 
Sbjct: 433 MFYSSLIDGLGKAGRVDEAERLFEEM-SEKGCTRDSYCYNALIDAFTKHGKVDEALALFK 491

Query: 287 EM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            M  E G +  ++  T LI    K  R ++ ++  + + + GITP
Sbjct: 492 RMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITP 536



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 106/234 (45%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +   + +++    +  + +   ++ LI  Y   G+ +  + +   M   G  P+++
Sbjct: 339 KEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVV 398

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++ + +  R  +    ++    NGL+ N   Y+SL+   G+A   ++   ++ EM
Sbjct: 399 TYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEM 458

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG       YN L+      G  DEA  +F+ M+  E C    +T++ +I+      +
Sbjct: 459 SEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHR 518

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EA  +++ M++ G  P    L +L      + +     + L+ L  +G+  D
Sbjct: 519 NEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILDELAPMGVILD 572



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 139/331 (41%), Gaps = 24/331 (7%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E  RI P+   ++T+IK Y  AG     L     M+  G++ + ITY  ++         
Sbjct: 249 ESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDF 308

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                +Y+EM + GL    + ++ ++    +     +  +V+  M  KG + +V +Y  L
Sbjct: 309 SSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVL 368

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +   A  G  ++A  +   M   E   PD  T+S ++      G+V EA   F      G
Sbjct: 369 IDGYAKTGSVEDAIRLLHRM-IDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNG 427

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE--- 349
              N    +SLI   GKA R D+  R    + E G T D      L++  T+  K +   
Sbjct: 428 LAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAL 487

Query: 350 -LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK----KEATELFNSISKDVKKAYCNCL 404
            L K +E  E  +  + Y   +L     I G FK    +EA +L++ +          CL
Sbjct: 488 ALFKRMEEEEGCDQTV-YTYTIL-----ISGMFKEHRNEEALKLWDMMIDKGITPTAACL 541

Query: 405 IDLCVNLNL---LENACKLLE----LGLTLE 428
             L   L L   +  ACK+L+    +G+ L+
Sbjct: 542 RALSTGLCLSGKVARACKILDELAPMGVILD 572


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 2/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G V+ A  L D  ++     D   ++  I  +G AG  D     + EMK+ G+ P+ 
Sbjct: 241 AREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDD 300

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++  + +A R  +   +++++  N   P    Y +++  YG A   ++   +   
Sbjct: 301 VTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLER 360

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            K KG   SV  YN +L         +EA  IFE+MK   +  P+  T++ +I +    G
Sbjct: 361 QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMK--RDAVPNVPTYNILIDMLCREG 418

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           K++ A  + ++M  AG  PN+  +  +I    KAQ+ ++       + +   TP+
Sbjct: 419 KLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPN 473



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 119/275 (43%), Gaps = 40/275 (14%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA  FS+LI   G  G  D   ++YE+M   G  P  I Y +L+ +  +  R      I
Sbjct: 472 PNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKI 531

Query: 179 YKEMTDNGLSPNWN-----------------------------------TYASLLRAYGR 203
           YKEM   G SP+                                     +Y+ L+    +
Sbjct: 532 YKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVK 591

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           A    +T  ++  MKE+G  L    YN ++      G  ++A+++ E+MK   +  P   
Sbjct: 592 AGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH-PPTVV 650

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+ S+I   +   ++ EA  +F E    G + N+ V +SLI  +GK  R D+    +  L
Sbjct: 651 TYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL 710

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
            + G+TP+     CLL+ + +   EE+ + + C +
Sbjct: 711 MQKGLTPNVYTWNCLLDALVKA--EEINEALICFQ 743



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 3/236 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +AG     + L+   + +   +D +A++ +I  +  +G  +    + EEMK  G  P +
Sbjct: 590 VKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTV 649

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++D + +  R  +   +++E   NG+  N   Y+SL+  +G+    ++   +  E
Sbjct: 650 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEE 709

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCR 275
           + +KG+  +V  +N LL         +EA   F+ MK  + C P+  T+S +I  +C  R
Sbjct: 710 LMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK-CPPNQITYSILINGLCRVR 768

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K ++A   + EM + G +PN    T++I    KA    +     +R    G  PD
Sbjct: 769 -KFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPD 823



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 94/183 (51%), Gaps = 1/183 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L++ A++   +++   +S+LI  +G  G  D    + EE+   G+ PN+ T+N LLD
Sbjct: 668 AYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 727

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A+   +    ++ M D    PN  TY+ L+    R R        ++EM++ G++ 
Sbjct: 728 ALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKP 787

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y T+++  A  G   EA  +F   K++    PDS ++++MI   S   K  +A A+
Sbjct: 788 NTITYTTMISGLAKAGNILEASGLFSRFKANGGI-PDSASYNAMIEGLSSANKAMDAYAL 846

Query: 285 FNE 287
           F E
Sbjct: 847 FEE 849



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 14/290 (4%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
            ++ + M+    +P    Y  L+  +   + P  +  ++ +M + G   N + + +L+R 
Sbjct: 180 FDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRV 239

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           + R    +  LS+  EMK   +   + LYN  +      G  D +++ F +MKS     P
Sbjct: 240 FAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKS-HGLMP 298

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  T++SMI +     ++ EA  +F ++ +    P  +   ++I  YG A + D+    L
Sbjct: 299 DDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLL 358

Query: 321 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
            R    G  P      C+L  + +  + EE  ++ E +++          +L++    EG
Sbjct: 359 ERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREG 418

Query: 380 DFKKEATELFNSISKDVKKA-------YCNCLIDLCVNLNLLENACKLLE 422
                       I  D+++A         N +ID       LE AC + E
Sbjct: 419 KLNAAL-----EIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFE 463



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           VE A  +++  + +     PN   ++ LI +    G  +  L + ++M+  G+ PN++T 
Sbjct: 386 VEEALRIFEEMKRDAV---PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTV 442

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++D + +A++  +  +I++ M D   +PN  T++SL+   G+    +D  S+Y +M +
Sbjct: 443 NIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLD 502

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G      +Y +L+      G  ++  +I+++M  +  C PD    ++ +      G+  
Sbjct: 503 CGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHT-GCSPDLTLINTYMDCVFKAGETE 561

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-------- 331
           +  A+F E+   GF P+    + LI    KA   ++       + E G   D        
Sbjct: 562 KGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVI 621

Query: 332 DRFC 335
           D FC
Sbjct: 622 DGFC 625



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 121/292 (41%), Gaps = 3/292 (1%)

Query: 32  SLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLK 91
           +++++     Q   V   E  +S     ++N ++ H +      S     P S  + +L 
Sbjct: 108 AVNYFQWAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELV 167

Query: 92  EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG 151
                +R   +  AF +    R  K+R   +A++ LI         D  L ++ +M+ +G
Sbjct: 168 ANCVKSR--KLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELG 225

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
            + N+  +  L+    R  R     ++  EM  N L  +   Y   +  +G+A   + + 
Sbjct: 226 YEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSW 285

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
             + EMK  G+      Y +++ +       DEA E+FE ++ +    P ++ +++MI  
Sbjct: 286 KFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKV-PCAYAYNTMIMG 344

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
               GK  EA  +       G  P++     ++ C GK +R ++ +R    +
Sbjct: 345 YGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM 396



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/285 (20%), Positives = 122/285 (42%), Gaps = 36/285 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A+ LY++  +         +++LI+ +   G  +    +Y+EM   G  P++ 
Sbjct: 486 KCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLT 545

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N  +D + +A    + + +++E+  +G  P+  +Y+ L+    +A    +T  ++  M
Sbjct: 546 LINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAM 605

Query: 218 KEKGMQLSVTLYNTLL-AMC----------------------------------ADVGYT 242
           KE+G  L    YN ++   C                                  A +   
Sbjct: 606 KEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRL 665

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           DEA+ +FE+ KS+   + +   +SS+I      G++ EA  +  E+++ G  PN++    
Sbjct: 666 DEAYMLFEEAKSN-GIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 724

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           L+    KA+  ++ +     + +L   P+      L+N + +  K
Sbjct: 725 LLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRK 769



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 1/205 (0%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P A+++L+ +      FD    + EEM   G  P+      L+    ++++  +   I +
Sbjct: 125 PEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQ 184

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
            M      P ++ Y  L+ A    R  +  L ++ +M+E G +++V L+ TL+ + A  G
Sbjct: 185 TMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREG 244

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             D A  + ++MKS+ +   D   ++  I      GKV  +   F+EM   G  P+    
Sbjct: 245 RVDAALSLLDEMKSN-SLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTY 303

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPE 325
           TS+I    KA R D+ V    +L +
Sbjct: 304 TSMIGVLCKANRLDEAVELFEQLEQ 328



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +S LI        F+     ++EM+ +G+KPN ITY  ++  + +A    +   +
Sbjct: 752 PNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGL 811

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +     NG  P+  +Y +++     A    D  +++ E + KG  +       LL     
Sbjct: 812 FSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHK 871

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTF 265
               ++A  +   +K +   Q  S +F
Sbjct: 872 AECLEQAAIVGAVLKETAKSQHASRSF 898


>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 957

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 13/238 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+ G  + A GL  RA+     +D  A++T +K    +GN  G L VY EM+   ++P+ 
Sbjct: 625 TKEGRFKDAAGLMKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSA 684

Query: 157 ITYNNL------LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
            TY  L      L  +GRA + ++V      +  + +  +   Y+ ++  YG A   ++ 
Sbjct: 685 KTYTILISLFSKLGDLGRAVQAFEV------LNSSEVGADEIAYSQMIHCYGCAGRPKEA 738

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             +++EM+ KG + +  +YN LL   A  G   EA  +  DM+  + C P S T+  +++
Sbjct: 739 ADLFQEMETKGFKPNEVIYNNLLDAFARAGLFAEARLLLSDMR-RKGCPPSSVTYLLLMS 797

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
               +GK ++AE++ + M + G  P+      +I+ YG   +  D  R    L  +GI
Sbjct: 798 AYGSKGKPADAESLLHLMQDRGLYPDCRHYNEVIRAYGNVGKLSDACRIFYELKTVGI 855



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 1/219 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A++TL+ +YG AG          EM   GV+P+ +    +L+   R +R   +   Y+ M
Sbjct: 109 AYTTLLGIYGQAGKLTLAEETLSEMLDAGVEPDEVAGGCMLEAYARWERYDTLLEFYEAM 168

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              GL P+ + Y +++    +A    D L ++ ++  + ++ +  LY  ++ +    G T
Sbjct: 169 RQRGLVPSAHVYRTMIVTLYKAERHSDALMLWEDLLVEKLEPNFVLYAIIIHILNKEGRT 228

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           ++A   F+DM+++ +  PD   ++++I      G+  E+EA++ +M + G  P+ F  T 
Sbjct: 229 EDAVHTFKDMRAAGHL-PDELLYNTIICALGKLGRYQESEALYLDMKKQGIVPSKFTYTI 287

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
           +I  + KA R       L  +   G   D+     ++N+
Sbjct: 288 MINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINM 326



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 1/214 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  A   +++ Y     +D  L  YE M+  G+ P+   Y  ++ T+ +A+R      ++
Sbjct: 141 DEVAGGCMLEAYARWERYDTLLEFYEAMRQRGLVPSAHVYRTMIVTLYKAERHSDALMLW 200

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +++    L PN+  YA ++    +    ED +  +++M+  G      LYNT++     +
Sbjct: 201 EDLLVEKLEPNFVLYAIIIHILNKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKL 260

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   E+  ++ DMK  +   P  +T++ MI + S  G+ + A     EM  +G   +  V
Sbjct: 261 GRYQESEALYLDMK-KQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVV 319

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             S+I  YGKA   ++  +    +  LG+   ++
Sbjct: 320 YCSIINMYGKAGLYEEAEKIFKEMDTLGLLSHEK 353



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 2/244 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  E A   +   R      D   ++T+I   G  G +     +Y +MK  G+ P+  
Sbjct: 224 KEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEALYLDMKKQGIVPSKF 283

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  +++   +A R         EM  +G   +   Y S++  YG+A   E+   +++EM
Sbjct: 284 TYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINMYGKAGLYEEAEKIFKEM 343

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+      Y ++  + A+ G   EA ++F D+ + +       T+++++      G 
Sbjct: 344 DTLGLLSHEKSYTSMAKVRAEAGRHAEALKLF-DVMAEKGLLTTRMTWNTLLHCFVRIGD 402

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V +A  ++N+M+EAG   N+    ++I  Y K Q  +D    L  + E G+ PD+   G 
Sbjct: 403 VEQATKVYNDMVEAG-SANVVTYGNMINLYSKFQMVEDAENLLAEMRESGVKPDEYIYGS 461

Query: 338 LLNV 341
            + +
Sbjct: 462 FVKL 465



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G++  A   ++   + +   D  A+S +I  YG AG      ++++EM+  G KPN 
Sbjct: 695 SKLGDLGRAVQAFEVLNSSEVGADEIAYSQMIHCYGCAGRPKEAADLFQEMETKGFKPNE 754

Query: 157 ITYNNLLDTMGRA-----------------------------------KRPWQVKTIYKE 181
           + YNNLLD   RA                                    +P   +++   
Sbjct: 755 VIYNNLLDAFARAGLFAEARLLLSDMRRKGCPPSSVTYLLLMSAYGSKGKPADAESLLHL 814

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M D GL P+   Y  ++RAYG      D   ++ E+K  G+ L +  + TL+ +  D G 
Sbjct: 815 MQDRGLYPDCRHYNEVIRAYGNVGKLSDACRIFYELKTVGIGLELGCFRTLVKIHLDHGQ 874

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            ++ ++I++D+  S++   D   +   + +C   G+ +EA+ +  E+   GF
Sbjct: 875 FEQGWQIYKDL--SQSFTVDQNLYGIAVELCIGAGRRTEADQLKVELKGKGF 924



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 141/331 (42%), Gaps = 34/331 (10%)

Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           +K  I P+ F+   +I ++  AG F        EM+  G   + + Y ++++  G+A   
Sbjct: 274 KKQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINMYGKAGLY 333

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + + I+KEM   GL  +  +Y S+ +    A    + L ++  M EKG+  +   +NTL
Sbjct: 334 EEAEKIFKEMDTLGLLSHEKSYTSMAKVRAEAGRHAEALKLFDVMAEKGLLTTRMTWNTL 393

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           L     +G  ++A +++ DM   E    +  T+ +MI + S    V +AE +  EM E+G
Sbjct: 394 LHCFVRIGDVEQATKVYNDM--VEAGSANVVTYGNMINLYSKFQMVEDAENLLAEMRESG 451

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG----CLLNVMTQTP-- 346
            +P+ ++  S ++ Y  +   D     +  + + G+   +  C       L    Q+P  
Sbjct: 452 VKPDEYIYGSFVKLYCNSDMIDKATMVVQEMKDDGL---ESVCNEREMFPLGQALQSPID 508

Query: 347 ----------KEELGKLVEC-------VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
                     + E G+L E        VE     +     L++      G F+K A  LF
Sbjct: 509 TQILNQLLIKRAEAGELREAELLLDKLVEAGGCIVDTAAVLMINLYGRRGLFQK-AKSLF 567

Query: 390 NSISKDVKKA---YCNCLIDLCVNLNLLENA 417
           NS+ K          N +I LC     LE A
Sbjct: 568 NSLQKKDHPPSLYVYNTMIKLCAVCKELEEA 598



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 1/188 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            ++T+IKL       +  + V++ M+  G   + +T + L+    +  R      + K  
Sbjct: 581 VYNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVTVSILVHAYTKEGRFKDAAGLMKRA 640

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G++ +   Y + L+A  ++   +  L VY EM+E  ++ S   Y  L+++ + +G  
Sbjct: 641 KKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKTYTILISLFSKLGDL 700

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             A + FE + SSE    D   +S MI    C G+  EA  +F EM   GF+PN  +  +
Sbjct: 701 GRAVQAFEVLNSSE-VGADEIAYSQMIHCYGCAGRPKEAADLFQEMETKGFKPNEVIYNN 759

Query: 303 LIQCYGKA 310
           L+  + +A
Sbjct: 760 LLDAFARA 767



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 2/205 (0%)

Query: 144 YEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           +E MK  I   P++I Y  LL   G+A +    +    EM D G+ P+      +L AY 
Sbjct: 94  FEWMKLQIPYSPSVIAYTTLLGIYGQAGKLTLAEETLSEMLDAGVEPDEVAGGCMLEAYA 153

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           R    +  L  Y  M+++G+  S  +Y T++          +A  ++ED+   E  +P+ 
Sbjct: 154 RWERYDTLLEFYEAMRQRGLVPSAHVYRTMIVTLYKAERHSDALMLWEDL-LVEKLEPNF 212

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             ++ +I I +  G+  +A   F +M  AG  P+  +  ++I   GK  R  +       
Sbjct: 213 VLYAIIIHILNKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEALYLD 272

Query: 323 LPELGITPDDRFCGCLLNVMTQTPK 347
           + + GI P       ++NV ++  +
Sbjct: 273 MKKQGIVPSKFTYTIMINVWSKAGR 297



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 1/221 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
            Y+  R        + + T+I     A      L ++E++    ++PN + Y  ++  + 
Sbjct: 164 FYEAMRQRGLVPSAHVYRTMIVTLYKAERHSDALMLWEDLLVEKLEPNFVLYAIIIHILN 223

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +  R       +K+M   G  P+   Y +++ A G+    +++ ++Y +MK++G+  S  
Sbjct: 224 KEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEALYLDMKKQGIVPSKF 283

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y  ++ + +  G    A E   +M+ S  C  D   + S+I +    G   EAE +F E
Sbjct: 284 TYTIMINVWSKAGRFASAAETLAEMQRS-GCIADEVVYCSIINMYGKAGLYEEAEKIFKE 342

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           M   G   +    TS+ +   +A R  + ++  + + E G+
Sbjct: 343 MDTLGLLSHEKSYTSMAKVRAEAGRHAEALKLFDVMAEKGL 383



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 45/87 (51%)

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A E FE MK      P    +++++ I    GK++ AE   +EML+AG EP+      +
Sbjct: 89  QAREFFEWMKLQIPYSPSVIAYTTLLGIYGQAGKLTLAEETLSEMLDAGVEPDEVAGGCM 148

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           ++ Y + +R D ++     + + G+ P
Sbjct: 149 LEAYARWERYDTLLEFYEAMRQRGLVP 175



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 54/280 (19%), Positives = 111/280 (39%), Gaps = 23/280 (8%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP------- 154
           VE A  L    R    + D   + + +KLY  +   D    V +EMK  G++        
Sbjct: 437 VEDAENLLAEMRESGVKPDEYIYGSFVKLYCNSDMIDKATMVVQEMKDDGLESVCNEREM 496

Query: 155 -----------NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
                      +    N LL     A    + + +  ++ + G          ++  YGR
Sbjct: 497 FPLGQALQSPIDTQILNQLLIKRAEAGELREAELLLDKLVEAGGCIVDTAAVLMINLYGR 556

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-DS 262
               +   S++  +++K    S+ +YNT++ +CA     +EA  +F+ M+  EN +  D+
Sbjct: 557 RGLFQKAKSLFNSLQKKDHPPSLYVYNTMIKLCAVCKELEEAIFVFDRME--ENGRMFDA 614

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T S ++   +  G+  +A  +     + G   +     + ++   K+      +     
Sbjct: 615 VTVSILVHAYTKEGRFKDAAGLMKRAKKVGVAMDTVAYNTSLKANLKSGNLKGALEVYGE 674

Query: 323 LPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 362
           + E  I P  +    L+++ ++    +LG+ V+  E  NS
Sbjct: 675 MQEADIEPSAKTYTILISLFSKLG--DLGRAVQAFEVLNS 712


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 119/265 (44%), Gaps = 5/265 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G    A  L++  R    +    A++ L+K Y   G      ++  EM+  GV P+  T
Sbjct: 317 SGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 376

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ L+D    A R    + + KEM    + PN   ++ LL  +      + T  V +EMK
Sbjct: 377 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 436

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
             G++     YN ++         D A   F+ M  SE  +PD  T++++I  C C+ G+
Sbjct: 437 SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRM-LSEGIEPDRVTWNTLID-CHCKHGR 494

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
              AE MF  M   G  P       +I  YG  +R DD+ R L ++   GI P+      
Sbjct: 495 HIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTT 554

Query: 338 LLNVMTQTPKEELGKLVECVEKSNS 362
           L++V  ++ +      +EC+E+  S
Sbjct: 555 LVDVYGKSGR--FNDAIECLEEMKS 577



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 1/228 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +I  +G     D  +  ++ M + G++P+ +T+N L+D   +  R    + ++
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M   G  P   TY  ++ +YG     +D   +  +MK +G+  +V  + TL+ +    
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A E  E+MKS    +P S  ++++I   + RG   +A   F  M   G +P+L  
Sbjct: 563 GRFNDAIECLEEMKSV-GLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLA 621

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           L SLI  +G+ +R  +    L  + E G+ PD      L+  + +  K
Sbjct: 622 LNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDK 669



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 4/247 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A   +DR  +E    D   ++TLI  +   G       ++E M+  G  P   TYN 
Sbjct: 460 LDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNI 519

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++++ G  +R   +K +  +M   G+ PN  T+ +L+  YG++    D +    EMK  G
Sbjct: 520 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG 579

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ S T+YN L+   A  G +++A   F  M +S+  +P     +S+I       + +EA
Sbjct: 580 LKPSSTMYNALINAYAQRGLSEQAVNAFRVM-TSDGLKPSLLALNSLINAFGEDRRDAEA 638

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL--- 338
            A+   M E G +P++   T+L++   +  +   V      +   G  PD +    L   
Sbjct: 639 FAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSA 698

Query: 339 LNVMTQT 345
           L  M QT
Sbjct: 699 LRYMKQT 705



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 9/235 (3%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN+F  S L+  +   G +     V +EMK+IGVKP+   YN ++DT G+        
Sbjct: 405 VQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAM 464

Query: 177 TIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           T +  M   G+ P+   WNT       +GR    E+   ++  M+ +G     T YN ++
Sbjct: 465 TTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE---MFEAMERRGCLPCATTYNIMI 521

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
               D    D+   +   MKS +   P+  T ++++ +    G+ ++A     EM   G 
Sbjct: 522 NSYGDQERWDDMKRLLGKMKS-QGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGL 580

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           +P+  +  +LI  Y +   ++  V A   +   G+ P       L+N   +  ++
Sbjct: 581 KPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRD 635



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 119/267 (44%), Gaps = 7/267 (2%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT--LSVY 214
           +TYN L+    R     +   +  +M  +G   ++  Y+ ++++  R+   +    L +Y
Sbjct: 198 LTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLY 257

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           +E++   ++L V L N ++   A  G   +A ++   M  +      + T  S+I+  + 
Sbjct: 258 KEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLL-GMAQATGLSAKTATLVSIISALAD 316

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+  EAEA+F E+ ++G +P      +L++ Y K     D    ++ + + G++PD+  
Sbjct: 317 SGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 376

Query: 335 CGCLLNVMTQTPKEELGKLV--ECVEKSNSKLGYVVKLLLEEQDIEGDFKK--EATELFN 390
              L++      + E  ++V  E          +V   LL      G+++K  +  +   
Sbjct: 377 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 436

Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENA 417
           SI     + + N +ID     N L++A
Sbjct: 437 SIGVKPDRQFYNVVIDTFGKFNCLDHA 463


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 111 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           RA ++     P     L+  Y  +G       V   M+  G+ P++   N LL  + RA 
Sbjct: 164 RALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRAD 223

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
               +  + + M   G+SP+  TY++L+ AY + R  +    V  EM+E+G  L+   YN
Sbjct: 224 AMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYN 283

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEML 289
            L+A     G  +EAF   +DM+      PD +T+ ++I  +C  R + +EA+A+ +EM 
Sbjct: 284 VLIAGLCRSGAVEEAFGFKKDMEDY-GLVPDGFTYGALINGLCKSR-RSNEAKALLDEMS 341

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            A  +PN+ V  +LI  + +    D+  + +  +   G+ P+
Sbjct: 342 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 383



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 136/277 (49%), Gaps = 4/277 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ LI  +   GN D    + +EM A GV+PN ITY+NL+  + +  +  +  
Sbjct: 345 LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRAS 404

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + K+M  +   P+  TY  ++  + R    +D   +  EM+  G+  +V  Y+ ++   
Sbjct: 405 LLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGL 464

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  ++A ++ E+M +++  +P+++ ++ +I+     G VS A  +F++M +    P+
Sbjct: 465 CQSGEPEKASDLLEEM-TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPD 523

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVE 355
           L+   SLI    K  R ++  +   ++ E G+ P++  + G +   +     E   +LV+
Sbjct: 524 LYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQ 583

Query: 356 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
            +  +  K   V+ + L E   + D  ++ +  F S+
Sbjct: 584 RMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 620



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 125/266 (46%), Gaps = 2/266 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  L  +   +  R D   ++ +I+ +    +      +  EM+  G+ PN+ 
Sbjct: 396 KMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVY 455

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ ++  + ++  P +   + +EMT  GL PN   YA L+  Y R         ++ +M
Sbjct: 456 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 515

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +  +   +  YN+L+   + VG  +E+ + F  M+      P+ +T+S +I      G 
Sbjct: 516 TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ-ERGLLPNEFTYSGLIHGYLKNGD 574

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  AE +   ML+ G +PN  +   L++ Y K+   + V      + + G+  D+R  G 
Sbjct: 575 LESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGI 634

Query: 338 LLNVMTQTPKEELG-KLVECVEKSNS 362
           L++ ++ +   E   +++  +EK+ S
Sbjct: 635 LIHNLSSSGNMEAAFRVLSGIEKNGS 660



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 109/269 (40%), Gaps = 36/269 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R GNV +A  ++D+        D   +++LI      G  +     + +M+  G+ PN  
Sbjct: 501 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 560

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+    +       + + + M D GL PN   Y  LL +Y ++   E   S ++ M
Sbjct: 561 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 620

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICS--- 273
            ++G+ L   +Y  L+   +  G  + AF +   ++ + +  PD   +SS+I+ +C    
Sbjct: 621 LDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSV-PDVHVYSSLISGLCKTAD 679

Query: 274 ------------------------------CR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                                         C+ G +S A  +FN +L  G  PN    TS
Sbjct: 680 REKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTS 739

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           LI    K     +     N +   GITPD
Sbjct: 740 LIDGSCKVGDISNAFYLYNEMLATGITPD 768



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 2/220 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           + +GN+E AF +           D + +S+LI       + +    + +EM   GV PN+
Sbjct: 640 SSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNI 699

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + YN L+D + ++      + ++  +   GL PN  TY SL+    +     +   +Y E
Sbjct: 700 VCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNE 759

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G+     +Y+ L   C+  G  ++A  + E+M    +    S  F++++     RG
Sbjct: 760 MLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS--FNNLVDGFCKRG 817

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           K+ E   + + ++  G  PN   + ++I    +A +  +V
Sbjct: 818 KMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEV 857



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 100/243 (41%), Gaps = 36/243 (14%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ LI     +G  +      ++M+  G+ P+  TY  L++ + +++R  + K +  EM+
Sbjct: 282 YNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 341

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
              L PN   YA+L+  + R    ++   + +EM   G+Q +   Y+ L+     +G  D
Sbjct: 342 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMD 401

Query: 244 -----------------------------------EAFEIFEDMKSSENCQPDSWTFSSM 268
                                              +AF +  +M+++    P+ +T+S M
Sbjct: 402 RASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENA-GISPNVYTYSIM 460

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I      G+  +A  +  EM   G +PN FV   LI  Y +           +++ ++ +
Sbjct: 461 IHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNV 520

Query: 329 TPD 331
            PD
Sbjct: 521 LPD 523



 Score = 45.1 bits (105), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 31/262 (11%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + G++  AF LY+         D   +S L     +AG+ +  + + EEM   G   ++ 
Sbjct: 746  KVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASIS 804

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            ++NNL+D   +  +  +   +   +   GL PN  T  +++     A    +  +++ E+
Sbjct: 805  SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL 864

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP----------DSWTFSS 267
            ++K  + +   +++L     + G      ++ +DM   ++C+           D     S
Sbjct: 865  QQKTSESAARHFSSLFMDMINQGKI--PLDVVDDM-IRDHCKEGNLDKALMLRDVIVAKS 921

Query: 268  MITICS---------CR-GKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGKAQRT 313
                CS         CR GK+SEA  +  EM + G  P+    L +LT+L    G  Q  
Sbjct: 922  APMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNL-HTSGYIQEH 980

Query: 314  DDVVRALNRLPELGITPDDRFC 335
            + V+   N L    +  D +FC
Sbjct: 981  NTVLD--NMLCHKWLQKDSKFC 1000



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 8/197 (4%)

Query: 160 NNLLDTMGRA--KRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           N LL  M RA    P  + +I++ ++D+G  SP       L+  Y ++   +D   V   
Sbjct: 142 NGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPA--VLDVLVDTYKKSGRVQDAAEVVLM 199

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCR 275
           M+++GM  S+   N LL            +++ E M  +    PD +T+S++I   C  R
Sbjct: 200 MRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGA-GISPDVYTYSTLIEAYCKVR 258

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            +   A+ +  EM E G   N      LI    ++   ++       + + G+ PD    
Sbjct: 259 -EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTY 317

Query: 336 GCLLNVMTQTPKEELGK 352
           G L+N + ++ +    K
Sbjct: 318 GALINGLCKSRRSNEAK 334


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 95/189 (50%), Gaps = 1/189 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           + E++ A G  P + TYN LL+ + +  R  +   + +++ DNG +P+  TY SL+   G
Sbjct: 8   LMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLG 67

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           + +   +   +++EM  +G+ L    Y  L+      G   +A  +++ M +S  C PD 
Sbjct: 68  KEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM-TSHGCVPDV 126

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T S+MI   S  G++  A  +F  M   G  PN  V ++LI    KA++ D  +  L +
Sbjct: 127 VTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ 186

Query: 323 LPELGITPD 331
           + +   TPD
Sbjct: 187 MKKAFCTPD 195



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 114/248 (45%), Gaps = 9/248 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  L  +  +     D   +++LI   G          +++EM   G+  + +
Sbjct: 33  KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTV 92

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+  + +  +  Q  ++YK MT +G  P+  T ++++    +A      + +++ M
Sbjct: 93  CYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSM 152

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+  +  +Y+ L+         D A E+   MK +  C PD+ T++ +I      G 
Sbjct: 153 EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA-FCTPDTITYNVLIDGLCKSGD 211

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V  A A F+EMLEAG +P+++    LI  + KA  TD    +L +   +         GC
Sbjct: 212 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTIN--------GC 263

Query: 338 LLNVMTQT 345
            +++ T T
Sbjct: 264 TIDIHTYT 271



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 1/217 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  L  +  +     D   +++LI   G          +++EM   G+  + +
Sbjct: 314 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTV 373

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+  + +  +  Q  ++YK MT +G  P+  T ++++    +A      + +++ M
Sbjct: 374 CYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSM 433

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G+  +  +Y+ L+         D A E+   MK +  C PD+ T++ +I      G 
Sbjct: 434 EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA-FCTPDTITYNILIDGLCKSGD 492

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           V  A A F+EMLEAG +P+++    LI  + KA  TD
Sbjct: 493 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTD 529



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 116/255 (45%), Gaps = 7/255 (2%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L+         +D   ++ LI+     G      +VY+ M + G  P+++T + ++D
Sbjct: 75  AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID 134

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A R      I+K M   GL+PN   Y++L+    +AR  +  L +  +MK+     
Sbjct: 135 GLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 194

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEA 283
               YN L+      G  + A   F++M  +  C+PD +T++ +I+  C      + + +
Sbjct: 195 DTITYNVLIDGLCKSGDVEAARAFFDEMLEA-GCKPDVYTYNILISGFCKAGNTDAASHS 253

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           +  E    G   ++   T+++    K ++ ++ V  + ++   G TP       LLN + 
Sbjct: 254 LAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLC 313

Query: 344 QTPKEELGKLVECVE 358
           +     +G+L E ++
Sbjct: 314 K-----MGRLEEAID 323



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 102/234 (43%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  +Y    +     D    ST+I     AG     + +++ M+A G+ PN +
Sbjct: 103 QTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV 162

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+ L+  + +A++      +  +M     +P+  TY  L+    ++   E   + + EM
Sbjct: 163 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEM 222

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G +  V  YN L++     G TD A        +   C  D  T+++++   +   K
Sbjct: 223 LEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKK 282

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + EA A+  ++   G  P +    +L+    K  R ++ +  L ++ + G TPD
Sbjct: 283 IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 336



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 1/200 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L+         +D   ++ LI+     G      +VY+ M + G  P+++T + ++D
Sbjct: 356 AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID 415

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +A R      I+K M   GL+PN   Y++L+    +AR  +  L +  +MK+     
Sbjct: 416 GLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 475

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               YN L+      G  + A   F++M  +  C+PD +T++ +I+     G    A  +
Sbjct: 476 DTITYNILIDGLCKSGDVEAARAFFDEMLEA-GCKPDVYTYNILISGFCKAGNTDAACGV 534

Query: 285 FNEMLEAGFEPNLFVLTSLI 304
           F++M  +    N+    +LI
Sbjct: 535 FDDMSSSRCSANVVTYGALI 554



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 1/195 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  +Y    +     D    ST+I     AG     + +++ M+A G+ PN +
Sbjct: 384 QTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV 443

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y+ L+  + +A++      +  +M     +P+  TY  L+    ++   E   + + EM
Sbjct: 444 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 503

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G +  V  YN L++     G TD A  +F+DM SS  C  +  T+ ++I+    R +
Sbjct: 504 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM-SSSRCSANVVTYGALISGLCKRRQ 562

Query: 278 VSEAEAMFNEMLEAG 292
           +++A   F  M E G
Sbjct: 563 LTKASLYFQHMKERG 577



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 70/175 (40%), Gaps = 36/175 (20%)

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           E+ +++  ++   G   ++  YN LL     +G  +EA ++   +  +  C PD  T++S
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN-GCTPDVVTYTS 61

Query: 268 MI---------------------------TICSC--------RGKVSEAEAMFNEMLEAG 292
           +I                           T+C           GK+ +A +++  M   G
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
             P++  L+++I    KA R    VR    +   G+ P++     L++ + +  K
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 176


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 103/216 (47%), Gaps = 2/216 (0%)

Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R+ PN   F+ L+  + + G     L+   +M+  G+ P+ +TYN LL+   R     + 
Sbjct: 204 RLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 263

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           +T+   M   G+ P   TY +L+ AY R  + +    V   M   G +  +  YN L A 
Sbjct: 264 RTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAG 323

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  DEAF++ ++M+      PD  T+++++  C    + S+A  +  EM E G + 
Sbjct: 324 LCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKS 383

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +L     +++   +  + ++ +  L  + E G+TPD
Sbjct: 384 SLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPD 419



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 135/301 (44%), Gaps = 20/301 (6%)

Query: 134 AGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192
           AG  D    + +EM+ +G V P+++TYN L+D   + +R      + +EM + G+  +  
Sbjct: 327 AGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLV 386

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           T+  +++   R    E+ L     M E+G+   V  YNTL+      G   +AF + ++M
Sbjct: 387 THNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEM 446

Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
             S   + D++T ++++       +  EAE +     + GF P+     +++  Y K  +
Sbjct: 447 VRS-GLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYK 505

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS--KLGYV--- 367
            +  +   + + +  +TP       L+  ++      +GKL E ++K N   ++G V   
Sbjct: 506 PEPALCLWDEMIKRKLTPSISTYNTLIKGLST-----MGKLTEAIDKLNELMEMGLVPDD 560

Query: 368 ------VKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 421
                 +    +E D+E  F+     + NS   DV    CN L++       LE A KL 
Sbjct: 561 TTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDV--VTCNTLMNGLCLYGRLEKAMKLF 618

Query: 422 E 422
           E
Sbjct: 619 E 619



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 2/189 (1%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L+ +  + A+ + PN  T+N L+ T           +   +M   GLSP+  TY +LL A
Sbjct: 194 LDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNA 253

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           + R     +  ++   MK++G+  +   YNTL++  A +G+  +A ++ E M ++   +P
Sbjct: 254 HCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAM-TAFGFEP 312

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPNLFVLTSLIQCYGKAQRTDDVVRA 319
           D WT++ +       GKV EA  + +EM + G   P++    +L+    K QR+ D +  
Sbjct: 313 DLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNL 372

Query: 320 LNRLPELGI 328
           L  + E G+
Sbjct: 373 LEEMREKGV 381



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 4/218 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +E A G  +    E    D   ++TLI     AGN      + +EM   G+K +  
Sbjct: 397 REGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTF 456

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N LL  + + KR  + + + +     G  P+  +Y +++ AY +    E  L ++ EM
Sbjct: 457 TLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEM 516

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++ +  S++ YNTL+   + +G   EA +   ++       PD  T++ +I      G 
Sbjct: 517 IKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEM-GLVPDDTTYNIIIHAYCKEGD 575

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQ---CYGKAQR 312
           + +A    N+M+E  F+P++    +L+     YG+ ++
Sbjct: 576 LEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEK 613



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 152 VKPNMITYNNLLDTMGRA--KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           V+P++   N +L  + R+    P      +  +    L PN  T+  L+  +       D
Sbjct: 168 VRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLAD 227

Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            LS   +M+  G+      YNTLL      G   EA  +   MK  E   P   T+++++
Sbjct: 228 ALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKK-EGIVPTRATYNTLV 286

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           +  +  G + +A  +   M   GFEP+L+    L     +A + D+  +  + + +LGI 
Sbjct: 287 SAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIV 346

Query: 330 PDD 332
             D
Sbjct: 347 SPD 349



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 2/216 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++E AF  +++     ++ D    +TL+      G  +  + ++E     G K ++I
Sbjct: 572 KEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVI 631

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + +          + +M   GL P+  TY  LL A   A    +   +  ++
Sbjct: 632 TYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKL 691

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCRG 276
            E G       Y ++ +    V  T +  E+  D++S  N Q D   +++  I      G
Sbjct: 692 NESGKLYGRFFYPSIKSSVEAVE-TGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGG 750

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           ++ EA+A+ +EM++ G   +     +L++   K Q+
Sbjct: 751 QLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIKRQK 786



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 38/174 (21%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +I  Y   G+ +     + +M     KP+++T N L+                
Sbjct: 559 DDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLM---------------- 602

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 238
                NGL             YGR    E  + ++    EKG ++ V  YNTL+ A+C D
Sbjct: 603 -----NGLC-----------LYGRL---EKAMKLFESWVEKGKKVDVITYNTLIQALCKD 643

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
               D A   F DM+     QPD +T++ +++  S  G+  EA+ M +++ E+G
Sbjct: 644 -NDVDTALRFFADME-VRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESG 695


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +V  AF LY    ++   I PN   +S LI  +   G     ++++ ++    +KP+  T
Sbjct: 210 HVNDAFDLYSEMVSKG--ISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYT 267

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N L+D   + ++  + KT++  M   G+ P+  TY SL+  Y   +      S++  M 
Sbjct: 268 FNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMA 327

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G+   +  YN L+     +   D+A  +F +M   +N  P+  T++S+I   S  G++
Sbjct: 328 QGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMH-CKNIIPNVVTYNSLIDGLSKSGRI 386

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           S A  + ++M + G  PN+    S+I    K  + D  +  + +  + GI P
Sbjct: 387 SYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQP 438



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 21/194 (10%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++ LI  +      D  +N++ EM    + PN++TYN+L+D + ++ R      + 
Sbjct: 334 DIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLV 393

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 238
            +M D G+ PN  TY S++ A  +    +  +++  + K++G+Q S+  Y  L+  +C  
Sbjct: 394 DQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKV 453

Query: 239 VGYT-------------------DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            GY                    DEA  +   MK S +C P++ T+   I       +  
Sbjct: 454 EGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDS-SCIPNAVTYEITIRSLLDNNEND 512

Query: 280 EAEAMFNEMLEAGF 293
           +AE +F EM+  G 
Sbjct: 513 KAEKLFREMITRGL 526



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 104/231 (45%), Gaps = 3/231 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +  AF  +D+     + +D  ++ TLI      G     L++ + +    V+ N + YN 
Sbjct: 141 IHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNT 200

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++  M + K       +Y EM   G+SPN  TY++L+  +      +D + ++ ++  + 
Sbjct: 201 VIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILEN 260

Query: 222 MQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           ++     +N L+   C D     E   +F  M   +   PD  T++S++       +V+ 
Sbjct: 261 IKPDGYTFNILVDGFCKDRK-MKEGKTVFA-MMMKQGIIPDVVTYNSLMDGYCLVKEVNT 318

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A+++FN M + G  P++     LI  + K ++ D  +   N +    I P+
Sbjct: 319 AKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPN 369



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 114/249 (45%), Gaps = 9/249 (3%)

Query: 90  LKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 143
           L + SY T      + G    A  L  R   +  +++   ++T+I       + +   ++
Sbjct: 158 LDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDL 217

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           Y EM + G+ PN++TY+ L+       +      ++ ++    + P+  T+  L+  + +
Sbjct: 218 YSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCK 277

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
            R  ++  +V+  M ++G+   V  YN+L+     V   + A  IF  M +     PD  
Sbjct: 278 DRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTM-AQGGVNPDIR 336

Query: 264 TFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
           +++ +I   C  + KV +A  +FNEM      PN+    SLI    K+ R    ++ +++
Sbjct: 337 SYNILINGFCKIK-KVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQ 395

Query: 323 LPELGITPD 331
           + + G+ P+
Sbjct: 396 MHDRGVPPN 404



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 118/238 (49%), Gaps = 11/238 (4%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           +V+ A  L++R   +        F+ ++     + ++   L++ ++M+  G+KPN+   N
Sbjct: 66  DVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCN 125

Query: 161 NLLDTMGR-AKRPWQVKT---IYKEMTDNGLSPNWNTYASLLRAYGRARYGED--TLSVY 214
            L+    +    P Q+      + ++   G   +  +Y +L+  +G  + GE    L + 
Sbjct: 126 ILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLI--HGLCKVGETRAALDLL 183

Query: 215 REMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + +  K +QL+  +YNT++  MC D  + ++AF+++ +M  S+   P+  T+S++I+   
Sbjct: 184 QRVDGKLVQLNAVMYNTVIYGMCKD-KHVNDAFDLYSEM-VSKGISPNVVTYSALISGFF 241

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             GK+ +A  +FN+++    +P+ +    L+  + K ++  +       + + GI PD
Sbjct: 242 VVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPD 299


>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
           inaguensis]
          Length = 433

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+P+  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 180 KMGIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 239

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 240 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 299

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 300 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGX 354

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   ++   LG  PD      +LN
Sbjct: 355 VKDITVFERMIHLLSKYKKYSNVVEVFDKXRGLGYFPDSDVIAIVLN 401



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRARNEKWRIDPNA-------FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A +   +++ +        +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 26  GLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKLCDYSKAISIFSRLKRSGFXPDLVAY 85

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 86  NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMRE 145

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ SV  YNTLL +  D     E
Sbjct: 146 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPSVVSYNTLLRVYGDAELFGE 205

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 206 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTII 264

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 265 SIWGKVGKLDRAAMLFQKLRSSGVEID 291



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           D  R      D   +STLI  +G  G FD   +  ++M+   V  ++I Y+NL++   + 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKL 60

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               +  +I+  +  +G  P+   Y +++  +G+A+   +  S+  EMK  G+  + T Y
Sbjct: 61  CDYSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 120

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           +TLL M  +     EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M 
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 179

Query: 290 EAGFEPNLFVLTSLIQCYGKAQ 311
           + G EP++    +L++ YG A+
Sbjct: 180 KMGIEPSVVSYNTLLRVYGDAE 201



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 304 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGXVKDIT 359

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +    G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 360 VFERMIHLLSKYKKYSNVVEVFDKXRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 419

Query: 218 KEKG 221
           +E G
Sbjct: 420 QEVG 423


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 11/280 (3%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPN 122
           + G +P +    +  + +   +    Y+T      RAG V+ A G+ D  +     +DPN
Sbjct: 181 RVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAG--VDPN 238

Query: 123 A--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              ++  I  Y      +   ++YE M   GV  +++T + L+  + R  R  +   +++
Sbjct: 239 VATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFR 298

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM   G +PN  TY +L+ +  +A  G++ LS+  EM  +G+ + +  Y  L+      G
Sbjct: 299 EMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQG 358

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            TDE  +       S+N  P+  T++ +I        V EAE +  EM E    PN+   
Sbjct: 359 KTDEVKDTLR-FALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTF 417

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           +S+I  + K    D        + E GI P+    G L++
Sbjct: 418 SSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 1/220 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           RN   + D + ++T+I  +   G     L +  EMK   +KPN+ITYN L+  +      
Sbjct: 581 RNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAV 640

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + K +  EM   G SP+  T+  +L+A  ++R  +  L ++  M   G+   +T+YNTL
Sbjct: 641 EKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTL 700

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           L +    G T +A  + E+M  S    PD+ TF+++I        +  A A + +ML   
Sbjct: 701 LQVLCYHGMTRKATVVLEEMLGS-GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQN 759

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             PN+    +L+       R  +    L  + + G+ P++
Sbjct: 760 ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNN 799



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 4/220 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  L DR       +D   ++TLI  Y   G+    L+V + M A G+  +++
Sbjct: 147 RNGQVDAAAALADRG-GGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVV 205

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+    RA +    + +   M + G+ PN  TY   +  Y R +  E+   +Y  M
Sbjct: 206 GYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGM 265

Query: 218 KEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
              G+ L V   + L+A +C D G   EA+ +F +M       P+  T+ ++I   +  G
Sbjct: 266 VRNGVLLDVVTLSALVAGLCRD-GRFSEAYALFREMDKV-GAAPNHVTYCTLIDSLAKAG 323

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           +  E  ++  EM+  G   +L   T+L+   GK  +TD+V
Sbjct: 324 RGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEV 363



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 131/318 (41%), Gaps = 9/318 (2%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  R   VE AF LY+        +D    S L+      G F     ++ EM  +G  P
Sbjct: 248 YYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAP 307

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N +TY  L+D++ +A R  ++ ++  EM   G+  +  TY +L+   G+    ++     
Sbjct: 308 NHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTL 367

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           R      +  +   Y  L+         DEA ++  +M+  ++  P+  TFSS+I     
Sbjct: 368 RFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEME-EKSISPNVVTFSSVINGFVK 426

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           RG + +A      M E G  PN+    +LI  + K Q  D  +   + +   G+  +   
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFI 486

Query: 335 CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV-----VKLLLEEQDIEGDFKKEATEL 388
              L+N + Q  K EE   L +    S   L +V     +  L +  D+   FK     +
Sbjct: 487 VDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELM 546

Query: 389 FNSISKD--VKKAYCNCL 404
             ++  D  V   + NCL
Sbjct: 547 DRNMLPDAVVYNVFINCL 564



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 5/234 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  L+  A      +D   ++TLI     AG+        +E+    + P+ + Y
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N  ++ +    +  + K+   EM + GL P+ +TY +++ ++ R       L +  EMK 
Sbjct: 558 NVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             ++ ++  YNTL+A     G  ++A  +  +M S+    P S T   ++  CS   ++ 
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSA-GFSPSSLTHRRVLQACSQSRRLD 676

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQ--CYGKAQRTDDVVRALNRLPELGITPD 331
               +   M+ AG   ++ V  +L+Q  CY    R   VV  L  +   GI PD
Sbjct: 677 VILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVV--LEEMLGSGIAPD 728



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 1/151 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+ LI  +  + + D     Y +M    + PN+ T+N LL  +    R  +  T+ 
Sbjct: 728 DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVL 787

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM  +GL PN  TY  L   +G+     + + +Y EM  KG    V+ YN L++     
Sbjct: 788 IEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKA 847

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           G   +A E+F+DM+      P S T+  +++
Sbjct: 848 GMMTQAKELFKDMQ-KRGVHPTSCTYDILVS 877



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 91/194 (46%), Gaps = 1/194 (0%)

Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196
            D  L+++E M   G+  ++  YN LL  +       +   + +EM  +G++P+  T+ +
Sbjct: 675 LDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNA 734

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L+  + ++ + ++  + Y +M  + +  ++  +NTLL     VG   EA  +  +M+ S 
Sbjct: 735 LILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKS- 793

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             +P++ T+  + T    +    EA  ++ EM+  GF P +    +LI  + KA      
Sbjct: 794 GLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQA 853

Query: 317 VRALNRLPELGITP 330
                 + + G+ P
Sbjct: 854 KELFKDMQKRGVHP 867



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E+  I PN   FS++I  +   G  D        MK  G+ PN++TY  L+D   + +  
Sbjct: 406 EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQ 465

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                +Y +M   G+  N     SL+    +    E+ ++++++    G+ L    Y TL
Sbjct: 466 DAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTL 525

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G    AF+  +++    N  PD+  ++  I      GK  EA++   EM   G
Sbjct: 526 IDGLFKAGDMPTAFKFGQELM-DRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMG 584

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +P+     ++I  + +   T   ++ L+ +    I P+
Sbjct: 585 LKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPN 623



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 4/139 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           ++ +++ AF  Y +  ++   I PN   F+TL+    + G       V  EM+  G++PN
Sbjct: 741 KSSHLDNAFATYAQMLHQN--ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TY+ L    G+     +   +Y EM   G  P  +TY +L+  + +A        +++
Sbjct: 799 NLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFK 858

Query: 216 EMKEKGMQLSVTLYNTLLA 234
           +M+++G+  +   Y+ L++
Sbjct: 859 DMQKRGVHPTSCTYDILVS 877



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  ++PN   +  L   +G   N    + +Y EM   G  P + TYN L+    +A   
Sbjct: 791 EKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMM 850

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRAR 205
            Q K ++K+M   G+ P   TY  L+   Y  AR
Sbjct: 851 TQAKELFKDMQKRGVHPTSCTYDILVSGWYDLAR 884


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 2/238 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G V+ AF ++   R +        ++ LI        F   + +  ++  +G+ PN++T
Sbjct: 276 GGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVT 335

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L++      +      ++ ++  +GLSP   TY +L+  Y +       L + +EM+
Sbjct: 336 YNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEME 395

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E+ +  S   Y  L+   A + YT++A E+   M+ S    PD +T+S +I      G +
Sbjct: 396 ERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKS-GLVPDVYTYSVLIHGLCVHGNM 454

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFC 335
            EA  +F  + E   +PN  +  ++I  Y K   +   +R LN +   G+ P+   FC
Sbjct: 455 KEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFC 512



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 3/216 (1%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           K  +D  +F  +IK    AG F     +   ++  G+ PN++ Y  L+D   +       
Sbjct: 153 KVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLA 212

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           K ++ +M   GL PN +TY+ L+  + +     +   +Y  MK  G+  +   YN L++ 
Sbjct: 213 KNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISE 272

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFE 294
             + G  D+AF++F +M+  +       T++ +I    CRG K  EA  + +++ + G  
Sbjct: 273 YCNGGMVDKAFKVFAEMR-EKGIACGVMTYNILIG-GLCRGKKFGEAVKLVHKVNKVGLS 330

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           PN+     LI  +    + D  VR  N+L   G++P
Sbjct: 331 PNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSP 366



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 102/218 (46%), Gaps = 3/218 (1%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  + PN   ++ LI  +   G  D  + ++ ++K+ G+ P ++TYN L+    + +   
Sbjct: 326 KVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLA 385

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
               + KEM +  ++P+  TY  L+ A+ R  Y E    ++  M++ G+   V  Y+ L+
Sbjct: 386 GALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLI 445

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G   EA ++F+ +    + QP+S  +++MI      G    A  + NEM+ +G 
Sbjct: 446 HGLCVHGNMKEASKLFKSL-GEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGM 504

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            PN+    S I    + ++  +    L ++   G+ P 
Sbjct: 505 VPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPS 542



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 93/199 (46%), Gaps = 1/199 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G ++ A  L+++ ++         ++TLI  Y    N  G L++ +EM+   + P+ +T
Sbjct: 346 VGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVT 405

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+D   R     +   ++  M  +GL P+  TY+ L+         ++   +++ + 
Sbjct: 406 YTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLG 465

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E  +Q +  +YNT++      G +  A  +  +M  S    P+  +F S I +     K 
Sbjct: 466 EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHS-GMVPNVASFCSTIGLLCRDEKW 524

Query: 279 SEAEAMFNEMLEAGFEPNL 297
            EAE +  +M+ +G +P++
Sbjct: 525 KEAELLLGQMINSGLKPSV 543



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 143/357 (40%), Gaps = 57/357 (15%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---RPWQVKTIYK 180
           + T++  Y  + + D  L     M   G  P   T+NNL+  + R+    + W +    K
Sbjct: 92  YDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELK 151

Query: 181 E-------------------------------MTDNGLSPNWNTYASLLRAYGRARYGED 209
                                           + + GLSPN   Y +L+   G  +YG  
Sbjct: 152 SKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLID--GCCKYGNV 209

Query: 210 TLS--VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
            L+  ++ +M   G+  +   Y+ L+      G   E F+++E+MK S    P+++ ++ 
Sbjct: 210 MLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRS-GIVPNAYAYNC 268

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I+     G V +A  +F EM E G    +     LI    + ++  + V+ ++++ ++G
Sbjct: 269 LISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG 328

Query: 328 ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS--KLGYVVKLLLEEQDIEGDFKKE- 384
           ++P+      L+N        ++GK+   V   N     G    L+     I G  K E 
Sbjct: 329 LSPNIVTYNILINGFC-----DVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVEN 383

Query: 385 ---ATELFNSISKDV---KKAYCNCLIDLCVNLNLLENACKLLEL----GLTLEVYT 431
              A +L   + +      K     LID    LN  E AC++  L    GL  +VYT
Sbjct: 384 LAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYT 440



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 157 ITYNNLLDTMGRA----KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +TY  L DT+  A        Q  T    M   G  P  NT+ +L+    R+ Y +    
Sbjct: 86  LTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWW 145

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           ++ E+K K + L    +  ++  C + GY  + F +   M       P+   ++++I  C
Sbjct: 146 IFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLA-MLEEFGLSPNVVIYTTLIDGC 203

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              G V  A+ +F +M   G  PN    + L+  + K     +  +    +   GI P+ 
Sbjct: 204 CKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNA 263

Query: 333 RFCGCLLN 340
               CL++
Sbjct: 264 YAYNCLIS 271



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/127 (19%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 115 EKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  + P+ ++  + ++G    GN      +++ +  + ++PN + YN ++    +    
Sbjct: 430 EKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSS 489

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
           ++   +  EM  +G+ PN  ++ S +    R    ++   +  +M   G++ SV+LY  +
Sbjct: 490 YRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549

Query: 233 LAMCADV 239
             +  DV
Sbjct: 550 HKVKGDV 556


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           + +  +N   +I P  FS LI  Y  +G  +  +  + +MK  G KP++ TYN++L  M 
Sbjct: 118 ILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMV 177

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           + +       +Y +M     +PN  T+  LL    +    +D L ++ EM +KG+  +  
Sbjct: 178 QKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTM 237

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +Y  +L+       TD+   +   MK S  C PDS T ++++      G++ EA A+   
Sbjct: 238 IYTIILSGLCQAKRTDDVHRLLNTMKVS-GCCPDSITCNALLDGFCKLGQIDEAFALLQL 296

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + G+   +   +SLI    +A+R D+V     ++ + GI PD
Sbjct: 297 FEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPD 340



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+N ++D + +         I +E+ ++ +     T++ L+ AY ++   E  +  + +
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK+ G +  V  YN++L +         A  ++  M    N  P+  TF  ++      G
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKL-NYNPNRATFVILLNGLCKNG 215

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  +A  MF+EM + G  PN  + T ++    +A+RTDDV R LN +   G  PD   C 
Sbjct: 216 KTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCN 275

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK 382
            LL+   +  + +E   L++  EK     GYV+ +      I+G F+
Sbjct: 276 ALLDGFCKLGQIDEAFALLQLFEKE----GYVLGIKGYSSLIDGLFR 318



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 11/193 (5%)

Query: 141 LNVYE-EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
           L ++E E   +G+K     Y++L+D + RAKR  +V+   ++M   G+ P+   Y  L+R
Sbjct: 294 LQLFEKEGYVLGIK----GYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIR 349

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
            +      +  L++  +M ++G+      YN L+    DVG  D+A  +  ++ S  +C 
Sbjct: 350 GFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEI-SKNDCF 408

Query: 260 PDSWTFSSMITICS-CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           P S T++  I IC  CR G + EA  +FN+M   G  P++    +LI    KA   ++  
Sbjct: 409 PTSCTYT--ILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEE-A 465

Query: 318 RALNRLPELGITP 330
           R L    E+G  P
Sbjct: 466 RHLFYKMEIGKNP 478



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 104/248 (41%), Gaps = 14/248 (5%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+P+   ++ LI+ +   G  D  LN+  +M   G+ P+   YN L+          
Sbjct: 334 KAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLD 393

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           + +++  E++ N   P   TY  L+    R    ++   ++ +M+  G   S+  +N L+
Sbjct: 394 KARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALI 453

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQ------------PDSWTFSSMITICSCRGKVSEA 281
                 G  +EA  +F  M+  +N               D+ +  +M+      G + +A
Sbjct: 454 DGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKA 513

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             +  ++ ++G  P++     LI  + KA+  +   +    L   G +PD    G L++ 
Sbjct: 514 YKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDG 573

Query: 342 MTQTPKEE 349
             +  +EE
Sbjct: 574 FHRVDREE 581



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 107/256 (41%), Gaps = 18/256 (7%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G V+ A  + +         D   ++ LIK +   G  D   ++  E+      P   T
Sbjct: 354 VGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCT 413

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+  M R     + + I+ +M + G SP+  T+ +L+    +A   E+   ++ +M 
Sbjct: 414 YTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM- 472

Query: 219 EKGMQLSVTL--------------YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
           E G   S+ L                T++    + G   +A+++   +  S    PD  T
Sbjct: 473 EIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADS-GVVPDIMT 531

Query: 265 FSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           ++ +I    C+ K ++ A  +F E+   G  P+     +LI  + +  R +D  R L+++
Sbjct: 532 YNVLIN-GFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQM 590

Query: 324 PELGITPDDRFCGCLL 339
            + G TP      CL+
Sbjct: 591 VKNGCTPSSAVYKCLM 606



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 117/280 (41%), Gaps = 11/280 (3%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +D  +  T+++    +G       +  ++   GV P+++TYN L++   +AK       +
Sbjct: 492 MDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKL 551

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++E+   G SP+  TY +L+  + R    ED   V  +M + G   S  +Y  L+     
Sbjct: 552 FRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCR 611

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    AF ++     S   Q D       + +     +  E E     +LE  F+ N F
Sbjct: 612 KGKLSVAFSLWLKYLRSLPSQED-----ETLKLAEEHFEKGELEKAVRCLLEMNFKLNNF 666

Query: 299 VL---TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK--L 353
            +   T  +    +A+R+++ ++    L E  +  +   C  L+N + +    E+     
Sbjct: 667 EIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIF 726

Query: 354 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
           +  +EK    +  +   LL    ++ D  K A +L N ++
Sbjct: 727 LYTLEKGFMLMPRICNQLLRSLILQ-DKMKHALDLLNRMN 765


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 14/230 (6%)

Query: 118  RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
            R +P+   +++L+  +  AGN      V+ EMK  G+ PN+ TY+ ++D + R+ +  + 
Sbjct: 1277 RFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRA 1336

Query: 176  KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-A 234
              ++ EM D G  PN  T+ +L+R + +A   E  L VY +MK  G       YN L+ +
Sbjct: 1337 HDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIES 1396

Query: 235  MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
             C D    +EA +I   +K  + C  ++ +F+ +    S  G V+ A  MF +M +    
Sbjct: 1397 HCRD-DNLEEAVKILNSVK--KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCR 1453

Query: 295  PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 336
            PN      L++ +   + TD V++    + E  I P+          FCG
Sbjct: 1454 PNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCG 1503



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 36/210 (17%)

Query: 120  DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
            DPNA  F+ L++++  AG  +  L VY +MK +G  P+ ITYN L+++  R     +   
Sbjct: 1349 DPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVK 1408

Query: 178  I----------------------------------YKEMTDNGLSPNWNTYASLLRAYGR 203
            I                                  + +M D    PN  TY  L+R +  
Sbjct: 1409 ILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFAD 1468

Query: 204  ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
             +  +  L + +EM E  ++ +   Y  L++    +G+ + A+  F++M   +  +P   
Sbjct: 1469 KKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLP 1528

Query: 264  TFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
             +  ++      G++ + E +  +M+  GF
Sbjct: 1529 VYEMVLQQLRKAGQLKKHEELVEKMVNRGF 1558



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 21/246 (8%)

Query: 159  YNNLLDTMGRAKR---PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            Y  ++D  G+ ++    WQ+  + K  T N   P   T+  L+R Y +A    + +  + 
Sbjct: 1181 YMEMIDLAGKVRQFDLAWQLIDLMK--TRNVEIPV-ETFTILVRRYVKAGLAAEAVHAFN 1237

Query: 216  EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
             M++ G +     ++ +++  +      EA   F+ +K  +  +PD   ++S++      
Sbjct: 1238 RMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLK--DRFEPDVVVYTSLVHGWCRA 1295

Query: 276  GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDD 332
            G +SEAE +F EM  AG  PN++  + +I      G+  R  DV    + + ++G  P+ 
Sbjct: 1296 GNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDV---FSEMIDVGCDPNA 1352

Query: 333  RFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG----YVVKLLLEEQDIEGDFKKEATEL 388
                 L+ V  +  + E  K+++ V     +LG     +    L E     D  +EA ++
Sbjct: 1353 ITFNNLMRVHVKAGRTE--KVLQ-VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKI 1409

Query: 389  FNSISK 394
             NS+ K
Sbjct: 1410 LNSVKK 1415



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 119  IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
            ++ ++F+ +       G+ +    ++ +MK +  +PN +TYN L+      K    V  +
Sbjct: 1419 LNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKL 1478

Query: 179  YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLLAMCA 237
             KEM +N + PN NTY  L+  +    +  +  S ++EM +EK ++ S+ +Y  +L    
Sbjct: 1479 RKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLR 1538

Query: 238  DVGYTDEAFEIFEDM 252
              G   +  E+ E M
Sbjct: 1539 KAGQLKKHEELVEKM 1553


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 39/301 (12%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           N F+ LI  Y +  N +  L +  +M   G  P+ +TYN +L  + +  +  QV+ +  +
Sbjct: 212 NTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQ 271

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M ++GL PN NTY  L+  Y + ++ ++   V   M  KGM   V  YNT++    D G 
Sbjct: 272 MKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGK 331

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITIC----------------------------- 272
            DEA  + + M+S +   PD  T++++I  C                             
Sbjct: 332 IDEAVRLRDKMESFK-LVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHN 390

Query: 273 ------SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
                    GK+ EA  +  +M+E+GF P+ F   ++I  Y KA +  +  + ++ +   
Sbjct: 391 IMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRK 450

Query: 327 GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 386
           G+  D      LL+ M    +++L        K+  K GY++  +     I G FK E  
Sbjct: 451 GLKLDTFTLNTLLHTMCL--EKQLDDAYTLTMKAR-KRGYILDEVTYGTLIMGYFKDEQA 507

Query: 387 E 387
           +
Sbjct: 508 D 508



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 36/275 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  L D+  + K   D   ++TLI         D    + EEMKA GVK N +T+
Sbjct: 330 GKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTH 389

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++       +  +   +  +M ++G SP+  TY +++  Y +A    +   +  EM  
Sbjct: 390 NIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGR 449

Query: 220 KGMQLSVTLYNTLL-AMCAD-----------------------------VGY-----TDE 244
           KG++L     NTLL  MC +                             +GY      D 
Sbjct: 450 KGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADR 509

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A +++E+MK +        T++++I      GK  +A    NE+LE G  P+      +I
Sbjct: 510 ALKLWEEMKET-GIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIII 568

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             Y      +   +  N++ E  + PD   C  LL
Sbjct: 569 HGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILL 603



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 8/206 (3%)

Query: 107 GLYDRARNEKWRIDPNAFS-------TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  D A N   ++  + FS       T+I  Y  AG       + +EM   G+K +  T 
Sbjct: 400 GKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTL 459

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL TM   K+     T+  +    G   +  TY +L+  Y +    +  L ++ EMKE
Sbjct: 460 NTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKE 519

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G+  ++  YNT++      G TD+A +   ++   +   PD  T + +I      G V 
Sbjct: 520 TGIVATIITYNTIIRGLCLSGKTDQAVDKLNEL-LEKGLVPDESTSNIIIHGYCWEGAVE 578

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           +A    N+M+E   +P++F    L++
Sbjct: 579 KAFQFHNKMVEHSLKPDIFTCNILLR 604



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 117/273 (42%), Gaps = 15/273 (5%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ L  +AR   + +D   + TLI  Y      D  L ++EEMK  G+   +ITYN ++ 
Sbjct: 475 AYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIR 534

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +  + +  Q      E+ + GL P+ +T   ++  Y      E     + +M E  ++ 
Sbjct: 535 GLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKP 594

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            +   N LL      G  ++   +F +   S+    D+ T++ +I+      ++ +A  +
Sbjct: 595 DIFTCNILLRGLCREGMLEKGLTLF-NTWISKGKPMDTVTYNIIISSFCKERRLEDAFDL 653

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV-------------VRALNRLPELGITPD 331
             EM     EP+ +   +++    KA RT++              V+  +  PELG T D
Sbjct: 654 MTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELG-TSD 712

Query: 332 DRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 364
             +   + ++ TQ   ++  KL +  E+    L
Sbjct: 713 MMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSL 745



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 90/193 (46%), Gaps = 6/193 (3%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV---KTIYKEMTDNGLSPNWNTYASLLR 199
           ++ +MK +  +PN++T N LL+ + R+     +   + ++++    G+ PN NT+  L+ 
Sbjct: 160 IFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIH 219

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
            Y      E+ L +  +M E G       YNT+L          +  ++   MK+S    
Sbjct: 220 GYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNS-GLF 278

Query: 260 PDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
           P+  T++ ++    C+ K + EA  +   M   G  P+++   ++++      + D+ VR
Sbjct: 279 PNRNTYNILVH-GYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVR 337

Query: 319 ALNRLPELGITPD 331
             +++    + PD
Sbjct: 338 LRDKMESFKLVPD 350



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/252 (16%), Positives = 104/252 (41%), Gaps = 1/252 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +  A+ + D    +  ++D    +TL+         D    +  + +  G   + +
Sbjct: 433 KAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEV 492

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+    + ++  +   +++EM + G+     TY +++R    +   +  +    E+
Sbjct: 493 TYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNEL 552

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+    +  N ++      G  ++AF+ F +     + +PD +T + ++      G 
Sbjct: 553 LEKGLVPDESTSNIIIHGYCWEGAVEKAFQ-FHNKMVEHSLKPDIFTCNILLRGLCREGM 611

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +   +FN  +  G   +      +I  + K +R +D    +  +    + PD      
Sbjct: 612 LEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNA 671

Query: 338 LLNVMTQTPKEE 349
           ++  +T+  + E
Sbjct: 672 IVTGLTKAGRTE 683



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 47/243 (19%), Positives = 101/243 (41%), Gaps = 22/243 (9%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMI 157
           G VE AF  +++       + P+ F+  I L G    G  +  L ++    + G   + +
Sbjct: 575 GAVEKAFQFHNKMVEHS--LKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTV 632

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++ +  + +R      +  EM    L P+  TY +++    +A   E+   +  + 
Sbjct: 633 TYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKF 692

Query: 218 KEKGMQL-----------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            EKG Q+           S  +Y+  ++     G   +A ++F+  +  +    + +T+ 
Sbjct: 693 AEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAE-QKGVSLNKYTYI 751

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAG---FEPNLFVLTSLIQCYG---KAQRTDDVVRAL 320
            ++     R K     ++   M+ A    F+ N      ++ C+G   + +  + V+R L
Sbjct: 752 KLMDGLLKRRKSFTTTSLLPFMVSATIQFFDRNPMRYAHILWCFGFELEIEVPEGVLRCL 811

Query: 321 NRL 323
            +L
Sbjct: 812 YKL 814


>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rubella]
          Length = 440

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+P+  +F+TL+++YG A  F   ++++  M+   ++  ++TYN+++   G+     
Sbjct: 183 KMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLEHE 242

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 243 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 302

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 303 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 357

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +VV   +++  LG  PD      +LN
Sbjct: 358 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLN 404



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
           GL+D  R      D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            +     +  +I+  +  +G +P+   Y +++  +G+A+   +  S+  EMK  G+  + 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
           T Y+TLL M  +     EA  +F +M+  + C  D  T + MI +        EA+ +F 
Sbjct: 121 TSYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLSMAKEADKLFW 179

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQ 311
            M + G EP++    +L++ YG A+
Sbjct: 180 GMRKMGIEPSVVSFNTLLRVYGDAE 204



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 29  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 88

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 89  NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMRE 148

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ SV  +NTLL +  D     E
Sbjct: 149 IKCLLDLTTCNIMIDVYGQLSMAKEADKLFWGMRKMGIEPSVVSFNTLLRVYGDAELFGE 208

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N +    T++SMI I     +  +A  +  EM   G EPN    +++I
Sbjct: 209 AIHLFRLMQ-RKNIEQTVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTII 267

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 268 SIWGKVGKLDRAAMLFQKLRSSGVEID 294



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 307 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIT 362

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ N  A +L AYG+ +  +    VY EM
Sbjct: 363 VFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 422

Query: 218 KEKGMQLSVTLYNTLLAM 235
           +E G   S  ++  +L++
Sbjct: 423 QEVGCVFSDEVHFQMLSL 440


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 120/250 (48%), Gaps = 4/250 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG+++     Y RA   K  +D  +++T+IK    +   D    ++EE+K  G  PN++
Sbjct: 88  KAGDLDTG---YFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVV 144

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++D + +A R       ++EM+ +   P   TY  ++    +A+   D   V+ +M
Sbjct: 145 AYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQM 204

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +KG       Y TL+   +     DEA ++  D+  ++  +P + T+ S++        
Sbjct: 205 VQKGCVPDTITYTTLIDGFSKASKMDEARKLL-DVMLTKGPEPTAVTYGSIVHGFCKLDM 263

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           ++EA+ +  +M E G EP LF+ TSL+  Y    R ++  + L  +   G  PD      
Sbjct: 264 INEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTS 323

Query: 338 LLNVMTQTPK 347
           L++++  T +
Sbjct: 324 LIDLLFSTGR 333



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 103/238 (43%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           SY    G  E A+ +           D   +++LI L  + G      +V++ M   G  
Sbjct: 291 SYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCA 350

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ +TY  ++    +         I + M  +G+ P+   Y SL+  Y +    +    V
Sbjct: 351 PDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGV 410

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y  M   G++ +   +N L+      G TD AF +F++M   E   P   +++ +I    
Sbjct: 411 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLG 470

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G+VSEA   F EM++ G  P     TSLI    KA R  +  + +  + +LG+ PD
Sbjct: 471 KAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 528



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI  +  A   D    + + M   G +P  +TY +++    +     + K + 
Sbjct: 212 DTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVI 271

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M + G  P    + SLL  Y      E+   V  EM  +G    V LY +L+ +    
Sbjct: 272 AQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFST 331

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA  +F+ M   + C PD+ T+ ++I   S  G V  A  +   M ++G  P+ F 
Sbjct: 332 GRVPEARHVFDSM-IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFA 390

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SL+  Y K +R D      +R+   GI P+
Sbjct: 391 YNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 422



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 2/221 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ GNVE A  + +         D  A+++L+  Y      D    VY+ M A G+KPN 
Sbjct: 364 SKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNA 423

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +T+N L+  + +  +  +  +++KEM +   + P   +Y  L+   G+A    +    ++
Sbjct: 424 VTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQ 483

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM ++G+      Y +L+   A  G   EA ++ EDM       PD   +S++IT     
Sbjct: 484 EMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM-VKLGVNPDVQAYSALITGLIDS 542

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             V  A  +F EM++ G  PN      L + +  A R  D+
Sbjct: 543 SMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDL 583



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 6/186 (3%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEM-KAIGVKPNMIT 158
           V+ AFG+YDR       I PNA +  + ++G    G  D   ++++EM +   V P +++
Sbjct: 404 VDQAFGVYDRMVASG--IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVS 461

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+D +G+A R  +    ++EM D G+ P  +TY SL+ +  +A    +   +  +M 
Sbjct: 462 YTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMV 521

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G+   V  Y+ L+    D    D A+++F++M     C P+  T+  +       G+ 
Sbjct: 522 KLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMM-KRGCAPNEVTYKVLRRGFRAAGRA 580

Query: 279 SEAEAM 284
            + EA+
Sbjct: 581 LDLEAV 586



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 85/214 (39%), Gaps = 34/214 (15%)

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-------- 201
           +G +P +++YN ++  +    +  +    +  M DNG  P+   + +L+  +        
Sbjct: 1   MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 60

Query: 202 ------------------------GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
                                   G  + G+     +R +  K   L V  Y T++   A
Sbjct: 61  GHKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKA-SLDVISYTTVIKGLA 119

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           D    DEA E+FE++K++  C P+   ++++I      G++ +    F EM  +   P  
Sbjct: 120 DSKRIDEACELFEELKTA-GCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTR 178

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              T +I    KAQ   D  +   ++ + G  PD
Sbjct: 179 TTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPD 212


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 145/313 (46%), Gaps = 13/313 (4%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN F   TLIK Y     ++  + + + M A GV P++  YN L+  + RAK+  + K
Sbjct: 482 VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAK 541

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  +M + G+ PN +TY + +  Y ++   +     +++M   G+  +  +Y  L+   
Sbjct: 542 MLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGH 601

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            DVG T EA   F+ M   +   PD   +S++I   S  GK  EA  +F + L+ G  P+
Sbjct: 602 CDVGNTVEALSTFKCM-LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPD 660

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
           +F+  SLI  + K    +   +  + +   GI P+      L+N + +    E+ K  E 
Sbjct: 661 VFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLG--EVTKAREL 718

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKK----EATELFNS-ISKDVK-KAYCNC-LIDLCV 409
            ++   K   V  ++     I+G  K     EA +LF+  ISK +    Y  C LID C 
Sbjct: 719 FDEIEEK-DLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCG 777

Query: 410 NLNLLENACKLLE 422
               LE A  L  
Sbjct: 778 KEGNLEKALSLFH 790



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 121/272 (44%), Gaps = 40/272 (14%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+    I      G  D  L V + M   G+ P+  TY  L+D   + KR  + K I
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           ++ M  +GL+PN  TY +L+  + +    E+ L +  EM  +G++L+V  YN ++   A 
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSW----------------------------------- 263
            G   +A  +F +M  +   +PD+W                                   
Sbjct: 394 AGEMAKAMSLFNEMLMA-GLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPF 452

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+S +I+       + +A  + ++M+  G +PN+F+  +LI+ Y +  R +  +  L  +
Sbjct: 453 TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512

Query: 324 PELGITPDDRFC-GCLLNVMTQTPKEELGKLV 354
              G+ P D FC  CL+  + +  K E  K++
Sbjct: 513 IANGVLP-DLFCYNCLIIGLCRAKKVEEAKML 543



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 113/235 (48%), Gaps = 2/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G  + A G++ +        D   +++LI  +   G+ +    +Y+EM   G+ PN+
Sbjct: 637 SKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNI 696

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + YN L++ + +     + + ++ E+ +  L P+  TY++++  Y ++    +   ++ E
Sbjct: 697 VVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDE 756

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  KG+     +Y  L+  C   G  ++A  +F +  + +        F+S+I      G
Sbjct: 757 MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE--AQQKSVGSLSAFNSLIDSFCKHG 814

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           KV EA  +F++M++    PN+   T LI  YGKA+  ++  +    +    I P+
Sbjct: 815 KVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 869



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 163/381 (42%), Gaps = 55/381 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+E A  + D       +++   ++ +I     AG     ++++ EM   G++P+  
Sbjct: 358 KEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTW 417

Query: 158 TYNNLLD------TMGRA-------------KRPW----------------QVKTIYKEM 182
           TYN L+D       M +A               P+                +   +  +M
Sbjct: 418 TYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM 477

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             NG+ PN   Y +L++AY +    E  + + + M   G+   +  YN L+         
Sbjct: 478 IRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKV 537

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           +EA  +  DM   +  +P++ T+ + I + S  G++  AE  F +ML +G  PN  + T 
Sbjct: 538 EEAKMLLVDM-GEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTI 596

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEELGKLVECVEKS 360
           LI+ +     T + +     + E G+ PD R    +++ +++    KE +G  ++ +   
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL--- 653

Query: 361 NSKLGYVVKLLLEEQDI-----EGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLE 415
             K G V  + L    I     EGD +K A++L++ +  +          ++ V   L+ 
Sbjct: 654 --KTGVVPDVFLYNSLISGFCKEGDIEK-ASQLYDEMLHNGINP------NIVVYNTLIN 704

Query: 416 NACKLLELGLTLEVYTDIQSR 436
             CKL E+    E++ +I+ +
Sbjct: 705 GLCKLGEVTKARELFDEIEEK 725



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 145/332 (43%), Gaps = 21/332 (6%)

Query: 41  LQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAG 100
           ++  S  +     +  TK +        KTG  P  +++    S  +   KE       G
Sbjct: 626 IRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLY---NSLISGFCKE-------G 675

Query: 101 NVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           ++E A  LYD   +    I+PN   ++TLI      G       +++E++   + P+++T
Sbjct: 676 DIEKASQLYDEMLHNG--INPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVT 733

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ ++D   ++    +   ++ EM   G+SP+   Y  L+   G+    E  LS++ E +
Sbjct: 734 YSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQ 793

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           +K +  S++ +N+L+      G   EA E+F+DM   +   P+  T++ +I        +
Sbjct: 794 QKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDM-VDKKLTPNIVTYTILIDAYGKAEMM 851

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
            EAE +F +M      PN    TSL+  Y +      ++     +   GI  D    G  
Sbjct: 852 EEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYG-- 909

Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVVKL 370
             VM     +E GK +E ++  N  L   +KL
Sbjct: 910 --VMASAYCKE-GKSLEALKLLNKSLVEGIKL 938



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 108/233 (46%), Gaps = 2/233 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + GN+E A  L+  A+ +K     +AF++LI  +   G       ++++M    + PN++
Sbjct: 778  KEGNLEKALSLFHEAQ-QKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIV 836

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            TY  L+D  G+A+   + + ++ +M    + PN  TY SLL +Y +       +S++++M
Sbjct: 837  TYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDM 896

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + +G+      Y  + +     G + EA ++  +    E  + +   F ++I       +
Sbjct: 897  EARGIACDAIAYGVMASAYCKEGKSLEALKLL-NKSLVEGIKLEDDVFDALIFHLCKEKQ 955

Query: 278  VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +S    + +EM +     +     +L+  + K+   D+  + L  +  LG  P
Sbjct: 956  ISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 1008



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 124/287 (43%), Gaps = 12/287 (4%)

Query: 45  SVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEM 104
           SV LQ     + +K S  PQY H  +  + +  +  +    +A  + EK   TR   +E+
Sbjct: 100 SVRLQNFFYWSSSKMS-TPQYLHSYSILAIR--LCNSGLIHQADNMLEKLLQTRKPPLEI 156

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
              L  R   E    +   F   I  +   G  +   +V+    + G  P +I  NNL+ 
Sbjct: 157 LDSLV-RCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMR 215

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKG 221
            + +A        +Y  M +  + P+  TY ++++A+   G    G+  LS   EM EK 
Sbjct: 216 DLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLS---EM-EKE 271

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            + ++  YN  +      G  DEA E+ + +   +   PD  T++ ++     + +  EA
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEV-KKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEA 330

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           + +F  M  +G  PN F  T+LI  + K    ++ +R  + +   G+
Sbjct: 331 KLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGL 377


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 3/239 (1%)

Query: 108 LYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
           L+  A +   R  PN  ++S +I  + T G  D   N++ EM   G+ P+++TY  ++D 
Sbjct: 184 LHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDG 243

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
           + +A+   + + ++++M DNG  PN  TY  L+  Y      ++ + +  EM  +G++  
Sbjct: 244 LCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPD 303

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
              Y +LL      G   EA   F+ M   +  +P   T+  +I   + +G +SE  +  
Sbjct: 304 CYTYGSLLNYLCKNGRCREARFFFDSM-IRKGIKPKVSTYGILIHGYATKGALSEMHSFL 362

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           + M+E G  P+  +       Y K    D  +   N++ + G++P+    G L++ + +
Sbjct: 363 DLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCK 421



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 105/228 (46%), Gaps = 1/228 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D + F+     Y   G  D  ++++ +M+  G+ PN++ Y  L+D + +  R    +  +
Sbjct: 373 DHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKF 432

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M + G++PN   + SL+         E    +  EM ++G+  +   +NTL+    +V
Sbjct: 433 NQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNV 492

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   E   +  D+      +PD+++++ +I+     G+  EAE +F+ M+  G  P    
Sbjct: 493 GRVMEGRRLI-DLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVT 551

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
             +L+  Y  A R DD       +   G+TP       +L+ + QT +
Sbjct: 552 YNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKR 599



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 18/244 (7%)

Query: 108 LYDRARNEKWRIDPNAF-------STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           L+DRA     ++  N F       + LI  Y + G +   + + EEM A G+KP+  TY 
Sbjct: 249 LFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYG 308

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           +LL+ + +  R  + +  +  M   G+ P  +TY  L+  Y       +  S    M E 
Sbjct: 309 SLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVEN 368

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+     ++N   +  A  G  D+A +IF  M+      P+   + ++I      G+V +
Sbjct: 369 GLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR-QHGLSPNVVNYGALIDALCKLGRVDD 427

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYG-----KAQRTDDVVRALNRLPELGITPDDRFC 335
           AE  FN+M+  G  PN+ V  SL+  YG     K +R +++V     + + GI P+  F 
Sbjct: 428 AEVKFNQMINEGVTPNIVVFNSLV--YGLCTVDKWERAEELVY---EMLDQGICPNAVFF 482

Query: 336 GCLL 339
             L+
Sbjct: 483 NTLI 486



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 119/267 (44%), Gaps = 9/267 (3%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PNA  F+TLI      G       + + M+ +GV+P+  +Y  L+       R  + +
Sbjct: 475 ICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAE 534

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++  M   GLSP   TY +LL  Y  A   +D   ++REM  KG+   V  YNT+L   
Sbjct: 535 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 594

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                  EA E++ +M +S   + D +T++ ++        V EA  MF  +   G + N
Sbjct: 595 FQTKRFSEAKELYLNMINS-GTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLN 653

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPKEELGKLVE 355
           +   T +I    K  R +D +     +P  G+ P+   +     N++ +   EE   L  
Sbjct: 654 IITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFS 713

Query: 356 CVEKSNSK-----LGYVVKLLLEEQDI 377
            +EK+ +      L  +V+ LL   DI
Sbjct: 714 AMEKNGTAPNSQMLNALVRRLLHRGDI 740



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 40/273 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV-YEEMKAIGVKPNM 156
           R G++E  F  +       WR+D  A + L+K           ++V  + M  +G  P+ 
Sbjct: 102 RMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDT 161

Query: 157 ITYNNLL--------------------DTMGRAKRPWQVK------------------TI 178
           ++Y  LL                    D  GR   P  V                    +
Sbjct: 162 VSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNL 221

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + EM D G+ P+  TY +++    +A+  +    V+++M + G + +   YN L+     
Sbjct: 222 FLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLS 281

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           +G   E  ++ E+M S+   +PD +T+ S++      G+  EA   F+ M+  G +P + 
Sbjct: 282 IGKWKEVVQMLEEM-SARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVS 340

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               LI  Y       ++   L+ + E G++PD
Sbjct: 341 TYGILIHGYATKGALSEMHSFLDLMVENGLSPD 373



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 129/300 (43%), Gaps = 8/300 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G ++ A  ++++ R      +   +  LI      G  D     + +M   GV PN+
Sbjct: 385 AKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNI 444

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSV 213
           + +N+L+  +    +  + + +  EM D G+ PN   +NT    L   GR   G   + +
Sbjct: 445 VVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDL 504

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
              M+  G++     Y  L++     G TDEA ++F+ M S     P   T+++++    
Sbjct: 505 ---MEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSI-GLSPTEVTYNTLLHGYC 560

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
              ++ +A  +F EML  G  P +    +++    + +R  +       +   G   D  
Sbjct: 561 SASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIY 620

Query: 334 FCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
               +LN + ++   +E  K+ + +     +L  +   ++    ++G  K++A +LF +I
Sbjct: 621 TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAI 680


>gi|156070758|gb|ABU45173.1| unknown [Solanum melongena]
          Length = 427

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 134/290 (46%), Gaps = 8/290 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM- 182
            S++I+ YG A  FD  L +Y +M  +G   + I++N LL     +K   +V  ++ E+ 
Sbjct: 103 LSSIIRSYGVARMFDHALKIYHQMDDLGTPRSAISFNVLLSACMHSKLYDRVAQLFDEIP 162

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G  P+  +Y  L+R+Y      E  +  ++EM+EKG++++   + T+L      G +
Sbjct: 163 VKYGFLPDKVSYGVLIRSYCEMGLPEMAMERFKEMEEKGVEITAVAFTTILHSFYKKGKS 222

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA-EAMFNEMLEAGFEPNLFVLT 301
           DEA  ++ +M  S  C PD   ++  + I + +G   E  +A+  EM  AG +P+     
Sbjct: 223 DEAERVWNEM-VSRGCGPDVGAYN--VKIMNIQGSKPEGVKALIEEMSNAGLKPDTISYN 279

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
            L+ CY K Q  D+  +    L   G  P+      L+  + +  + E G  V     S 
Sbjct: 280 YLMTCYCKNQLMDEAQKVYEDLKTNGCNPNAATFRTLIFYLCKKGRFETGYKVFRESVSV 339

Query: 362 SKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNL 411
            K+   + L   +  +EG  KK        +S+ VKK +   L+   + L
Sbjct: 340 HKIPDFITL---KYLVEGLVKKSRWRDAKGMSRTVKKKFPPNLVKAWIKL 386



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 4/197 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++  LI+ Y   G  +  +  ++EM+  GV+   + +  +L +  +  +  + + ++
Sbjct: 170 DKVSYGVLIRSYCEMGLPEMAMERFKEMEEKGVEITAVAFTTILHSFYKKGKSDEAERVW 229

Query: 180 KEMTDNGLSPNWNTY-ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            EM   G  P+   Y   ++   G    G   L    EM   G++     YN L+     
Sbjct: 230 NEMVSRGCGPDVGAYNVKIMNIQGSKPEGVKAL--IEEMSNAGLKPDTISYNYLMTCYCK 287

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               DEA +++ED+K++  C P++ TF ++I     +G+      +F E +     P+  
Sbjct: 288 NQLMDEAQKVYEDLKTN-GCNPNAATFRTLIFYLCKKGRFETGYKVFRESVSVHKIPDFI 346

Query: 299 VLTSLIQCYGKAQRTDD 315
            L  L++   K  R  D
Sbjct: 347 TLKYLVEGLVKKSRWRD 363



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 5/199 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  EMA   +     +   I   AF+T++  +   G  D    V+ EM + G  P++  Y
Sbjct: 185 GLPEMAMERFKEMEEKGVEITAVAFTTILHSFYKKGKSDEAERVWNEMVSRGCGPDVGAY 244

Query: 160 N-NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           N  +++  G   +P  VK + +EM++ GL P+  +Y  L+  Y + +  ++   VY ++K
Sbjct: 245 NVKIMNIQG--SKPEGVKALIEEMSNAGLKPDTISYNYLMTCYCKNQLMDEAQKVYEDLK 302

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
             G   +   + TL+      G  +  +++F +  S     PD  T   ++     + + 
Sbjct: 303 TNGCNPNAATFRTLIFYLCKKGRFETGYKVFRESVSVHKI-PDFITLKYLVEGLVKKSRW 361

Query: 279 SEAEAMFNEMLEAGFEPNL 297
            +A+ M +  ++  F PNL
Sbjct: 362 RDAKGM-SRTVKKKFPPNL 379


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 119/265 (44%), Gaps = 5/265 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G    A  L++  R    +    A++ L+K Y   G      ++  EM+  GV P+  T
Sbjct: 288 SGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 347

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ L+D    A R    + + KEM    + PN   ++ LL  +      + T  V +EMK
Sbjct: 348 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 407

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
             G++     YN ++         D A   F+ M  SE  +PD  T++++I  C C+ G+
Sbjct: 408 SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRM-LSEGIEPDRVTWNTLID-CHCKHGR 465

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
              AE MF  M   G  P       +I  YG  +R DD+ R L ++   GI P+      
Sbjct: 466 HIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTT 525

Query: 338 LLNVMTQTPKEELGKLVECVEKSNS 362
           L++V  ++ +      +EC+E+  S
Sbjct: 526 LVDVYGKSGR--FNDAIECLEEMKS 548



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 1/228 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +I  +G     D  +  ++ M + G++P+ +T+N L+D   +  R    + ++
Sbjct: 414 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 473

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M   G  P   TY  ++ +YG     +D   +  +MK +G+  +V  + TL+ +    
Sbjct: 474 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 533

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A E  E+MKS    +P S  ++++I   + RG   +A   F  M   G +P+L  
Sbjct: 534 GRFNDAIECLEEMKSV-GLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLA 592

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           L SLI  +G+ +R  +    L  + E G+ PD      L+  + +  K
Sbjct: 593 LNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDK 640



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 4/247 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A   +DR  +E    D   ++TLI  +   G       ++E M+  G  P   TYN 
Sbjct: 431 LDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNI 490

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++++ G  +R   +K +  +M   G+ PN  T+ +L+  YG++    D +    EMK  G
Sbjct: 491 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG 550

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ S T+YN L+   A  G +++A   F  M +S+  +P     +S+I       + +EA
Sbjct: 551 LKPSSTMYNALINAYAQRGLSEQAVNAFRVM-TSDGLKPSLLALNSLINAFGEDRRDAEA 609

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL--- 338
            A+   M E G +P++   T+L++   +  +   V      +   G  PD +    L   
Sbjct: 610 FAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSA 669

Query: 339 LNVMTQT 345
           L  M QT
Sbjct: 670 LRYMKQT 676



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 9/239 (3%)

Query: 115 EKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E   + PN+F  S L+  +   G +     V +EMK+IGVKP+   YN ++DT G+    
Sbjct: 372 EAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCL 431

Query: 173 WQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               T +  M   G+ P+   WNT       +GR    E+   ++  M+ +G     T Y
Sbjct: 432 DHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE---MFEAMERRGCLPCATTY 488

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N ++    D    D+   +   MKS +   P+  T ++++ +    G+ ++A     EM 
Sbjct: 489 NIMINSYGDQERWDDMKRLLGKMKS-QGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMK 547

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
             G +P+  +  +LI  Y +   ++  V A   +   G+ P       L+N   +  ++
Sbjct: 548 SVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRD 606



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 119/267 (44%), Gaps = 7/267 (2%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT--LSVY 214
           +TYN L+    R     +   +  +M  +G   ++  Y+ ++++  R+   +    L +Y
Sbjct: 169 LTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLY 228

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           +E++   ++L V L N ++   A  G   +A ++   M  +      + T  S+I+  + 
Sbjct: 229 KEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLL-GMAQATGLSAKTATLVSIISALAD 287

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
            G+  EAEA+F E+ ++G +P      +L++ Y K     D    ++ + + G++PD+  
Sbjct: 288 SGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 347

Query: 335 CGCLLNVMTQTPKEELGKLV--ECVEKSNSKLGYVVKLLLEEQDIEGDFKK--EATELFN 390
              L++      + E  ++V  E          +V   LL      G+++K  +  +   
Sbjct: 348 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 407

Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENA 417
           SI     + + N +ID     N L++A
Sbjct: 408 SIGVKPDRQFYNVVIDTFGKFNCLDHA 434


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 2/182 (1%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G + ++ TYN  LD + +A         +++M   G  P+  TY+ +LR   +A   +  
Sbjct: 33  GYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKA 92

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             +  +++E G++L+V  Y+ ++  C      D+A EIF+ M S   C PD  TF+S++ 
Sbjct: 93  KELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLK 152

Query: 271 -ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            +CS   ++SEA  +F  M +AG EPN+   ++L+    KA R D+  R    + E    
Sbjct: 153 GLCSGE-RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCV 211

Query: 330 PD 331
           PD
Sbjct: 212 PD 213



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 4/200 (2%)

Query: 108 LYDRARNEK-WRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           L+ R ++ K +   PN   ++ ++     A   D    +  EM   G+ P+++TY+ L+D
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +  +  +   + +EM+  G+ P+  T AS+L A  +A   +  LS    MK +G   
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            +  YNTLL      G  DEA      M +++ C PD ++++ +IT     G+ + A A+
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK-CTPDVFSYTIIITALCRSGQAAGAHAI 501

Query: 285 FNEMLEAGFEPNLFVLTSLI 304
           F EM++ G  P+  +  SL+
Sbjct: 502 FQEMVKRGVLPDTVLYHSLL 521



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 13/217 (5%)

Query: 106 FGLYDRARN-----EKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G  DRA +      K  + P++F  ++++     AG  D  L+  E MKA G  P+++T
Sbjct: 387 LGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVT 446

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN LLD + +A R  +  T   +M     +P+  +Y  ++ A  R+       ++++EM 
Sbjct: 447 YNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMV 506

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
           ++G+     LY++LL   A  G  D A E+ +    +  C+PD +    M+    C+ GK
Sbjct: 507 KRGVLPDTVLYHSLLDGLARNGLEDLALELLK----TSLCKPD-FVMHKMVLDGLCKAGK 561

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             +A  +   M +AGF  + F   S++    K  + D
Sbjct: 562 AEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVD 598



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 100/209 (47%), Gaps = 2/209 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A   ++A+  + + +   +  D   +S +++    AG  D    +  +++  GVK N+
Sbjct: 49  AKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNV 108

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ITY+ ++D   +A R      I+K M+   G  P+  T+ SLL+         +   ++ 
Sbjct: 109 ITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFE 168

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M + G + +V  Y+TLL      G  DEA  ++E+M   ++C PD   ++S +T     
Sbjct: 169 YMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEM-VEKSCVPDLVAYTSFVTGLCKA 227

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
            +V+EA     +M+  G + +    +++I
Sbjct: 228 NRVAEACDCCRKMVTKGSKADAVAFSTVI 256



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F++L+K   +         ++E M   G +PN+I+Y+ LLD + +A R  +   ++
Sbjct: 143 DVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLW 202

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM +    P+   Y S +    +A    +     R+M  KG +     ++T++ +    
Sbjct: 203 EEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKK 262

Query: 240 GYT-----------------DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           G+                  DEA + FE+M  S N  P +  F+++I       ++ +  
Sbjct: 263 GHAEEAQNQMIEHLCRSGMLDEACKTFEEM-ISRNHPPSAELFNTLIHAVCKSKRLPDGV 321

Query: 283 AMFNE---MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            +F     M E    PNL     ++    KA++ D+    +N +   G++PD      L+
Sbjct: 322 LLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALV 381

Query: 340 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE--LFNSISKDVK 397
           + + +     LGKL    +            LLEE   EG F    T+  + N++SK  K
Sbjct: 382 DGLCK-----LGKLDRACD------------LLEEMSKEGVFPDSFTDASILNALSKAGK 424

Query: 398 KAY 400
             Y
Sbjct: 425 VDY 427



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 4/212 (1%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY--- 179
           A + +I+    +G  D     +EEM +    P+   +N L+  + ++KR      ++   
Sbjct: 268 AQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRM 327

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           K M +    PN  TY  ++    +A+  ++   +  EM   G+   V  Y+ L+     +
Sbjct: 328 KSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKL 387

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A ++ E+M S E   PDS+T +S++   S  GKV  A +    M   G  P+L  
Sbjct: 388 GKLDRACDLLEEM-SKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVT 446

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +L+    KA R D+ +  L ++     TPD
Sbjct: 447 YNTLLDGLCKAGRIDEAITFLAKMVAAKCTPD 478



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 132/281 (46%), Gaps = 9/281 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF-DGCLNVYEEMKAIG---VK 153
           R+G ++ A   ++   +         F+TLI     +    DG L +++ MK++      
Sbjct: 278 RSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVL-LFQRMKSMKEFYCP 336

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN+ TYN ++D + +AK+  + + +  EM + GLSP+  TY++L+    +    +    +
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             EM ++G+        ++L   +  G  D A    E MK+  +  PD  T+++++    
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS-TPDLVTYNTLLDGLC 455

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G++ EA     +M+ A   P++F  T +I    ++ +          + + G+ PD  
Sbjct: 456 KAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTV 515

Query: 334 FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV-KLLLE 373
               LL+ + +   E+L   +E ++ S  K  +V+ K++L+
Sbjct: 516 LYHSLLDGLARNGLEDLA--LELLKTSLCKPDFVMHKMVLD 554



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 107/247 (43%), Gaps = 19/247 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
           +AG ++ A  L  + R    +++   +S +I     A   D  L +++ M + G   P++
Sbjct: 85  KAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDV 144

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+N+LL  +   +R  +   +++ M   G  PN  +Y++LL    +A   ++   ++ E
Sbjct: 145 VTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEE 204

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CS-- 273
           M EK     +  Y + +          EA +    M  ++  + D+  FS++I I C   
Sbjct: 205 MVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKM-VTKGSKADAVAFSTVIGILCKKG 263

Query: 274 -------------CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
                        CR G + EA   F EM+     P+  +  +LI    K++R  D V  
Sbjct: 264 HAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLL 323

Query: 320 LNRLPEL 326
             R+  +
Sbjct: 324 FQRMKSM 330



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 4/194 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG V+ A    +  +      D   ++TL+     AG  D  +    +M A    P++
Sbjct: 420 SKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDV 479

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +Y  ++  + R+ +      I++EM   G+ P+   Y SLL   G AR G + L++   
Sbjct: 480 FSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLD--GLARNGLEDLAL-EL 536

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K    +    ++  +L      G  ++A E+ E M  +     D++T+ S+++     G
Sbjct: 537 LKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADA-GFPADAFTYISVVSGLRKLG 595

Query: 277 KVSEAEAMFNEMLE 290
           KV +A  + ++  E
Sbjct: 596 KVDKARQLVDDASE 609



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++KG Q SV  YN  L   A       A+E F+ M+      PD +T+S ++      G+
Sbjct: 30  RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQ-RRGYPPDDFTYSIVLRGLCKAGE 88

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +A+ +  ++ E+G + N+   + +I    KA R DD +     +   G        GC
Sbjct: 89  LDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGG--------GC 140

Query: 338 LLNVMT 343
           + +V+T
Sbjct: 141 VPDVVT 146


>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Brachypodium distachyon]
          Length = 684

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 99/194 (51%), Gaps = 3/194 (1%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ +I  +  AG  D    + +EM+  GV PN++T+N L+    +       K + K +
Sbjct: 423 SYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKML 482

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            ++GL P+  T+ SL+         +D    + EM E G++ +   YN L+      G+ 
Sbjct: 483 MEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHV 542

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSS-MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
           ++A ++   MK  +   PD+++F++ +++ C  + KV +A  +FN ML  G  P+ +   
Sbjct: 543 NKAIDLLNKMK-KDGITPDAYSFNAPILSFCRMK-KVDKARNIFNAMLRLGVVPDNYTYN 600

Query: 302 SLIQCYGKAQRTDD 315
           SLI+     +R D+
Sbjct: 601 SLIKALCDERRIDE 614



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +L+ ++GR    +    V+ +M   G++ S  +YN L+      G  D A+  F+ M  +
Sbjct: 146 ALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQM-PA 204

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           + CQPD +T+++++     RG + EA  +  +M  AG  PN+F  T L+  +  A R +D
Sbjct: 205 DGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPED 264

Query: 316 VVRALNRLPELGITPDD 332
            V   + + E G++P++
Sbjct: 265 AVHVFDTMKEKGVSPNE 281



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 88/182 (48%), Gaps = 1/182 (0%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G+   + +YN ++D   +A    +   I KEM + G+ PN  T+ +L+  Y +     + 
Sbjct: 416 GLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNA 475

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
            +V + + E G+   +  + +L+         D+AF+ F +M +    +P++ T++ ++ 
Sbjct: 476 KAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEM-AEWGVRPNAHTYNVLMH 534

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G V++A  + N+M + G  P+ +   + I  + + ++ D      N +  LG+ P
Sbjct: 535 ALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVP 594

Query: 331 DD 332
           D+
Sbjct: 595 DN 596



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 141/372 (37%), Gaps = 76/372 (20%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            RAG V+ A+  + +   +  + D   ++TL+      G  D  L +  +M+  G++PN+
Sbjct: 187 VRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNV 246

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL----RAYGRAR------- 205
            TY  L+D    A RP     ++  M + G+SPN  +Y +L+    R  GR +       
Sbjct: 247 FTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHGAFRCLGRHKAYVMLTE 306

Query: 206 ------------------------YGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CAD 238
                                     ++ + V ++M  +G  L   ++  +++    C +
Sbjct: 307 WLGREPPPHHSAWQCMLYCLSKNEMAKEVVEVTKKMNSRGYLLDNAIFGIVVSCAVKCLE 366

Query: 239 V----GYTDE--------AFEIF-EDMKSSENCQPDS-----------------WTFSSM 268
           +    G  D+         F+++   +KS   C+  S                  T  +M
Sbjct: 367 LSDLCGLLDDFVKKGGNPGFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNM 426

Query: 269 ITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +  C  + G V +A  +  EM E G  PNL    +LI  Y K     +    L  L E G
Sbjct: 427 VIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHG 486

Query: 328 ITPDDRFCGCLLNVMTQTPKEELGKLVEC----VEKSNSKLGYVVKLLLEEQDIEGDFKK 383
           + PD      L+N +  T   +L    +C     E       +   +L+      G   K
Sbjct: 487 LIPDIITFTSLINGLCHT--HQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNK 544

Query: 384 EATELFNSISKD 395
            A +L N + KD
Sbjct: 545 -AIDLLNKMKKD 555



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 1/181 (0%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  P    Y  ++ ++   K   +     K M  +GL     +Y  ++  + +A   +  
Sbjct: 381 GGNPGFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKA 440

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             + +EM+EKG+  ++  +NTL++  + +G    A  + + M       PD  TF+S+I 
Sbjct: 441 AEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLK-MLMEHGLIPDIITFTSLIN 499

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                 ++ +A   FNEM E G  PN      L+     A   +  +  LN++ + GITP
Sbjct: 500 GLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITP 559

Query: 331 D 331
           D
Sbjct: 560 D 560



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 14/228 (6%)

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           E++  G + +      L+ + GR         ++ +M   GL P+   Y +L+ A  RA 
Sbjct: 131 EVRGCGCEVSEELLRALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAG 190

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             +     +++M   G Q     YNTL+      G  DEA  +   M+ +   +P+ +T+
Sbjct: 191 AVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGA-GIRPNVFTY 249

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI----QCYGKAQRTDDVVRALN 321
           + ++      G+  +A  +F+ M E G  PN     +L+    +C G+ +    +   L 
Sbjct: 250 TMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHGAFRCLGRHKAYVMLTEWLG 309

Query: 322 RLPELGITPDDRFCGCLLNVMTQTPKEELGK-LVECVEKSNSKLGYVV 368
           R P     P      C+L  ++   K E+ K +VE  +K NS+ GY++
Sbjct: 310 REPP----PHHSAWQCMLYCLS---KNEMAKEVVEVTKKMNSR-GYLL 349


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 118/237 (49%), Gaps = 5/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G + +A  ++D     KW + P+  +F+TLI  Y   G+ D    +   M A G +P+
Sbjct: 148 KEGEMRLAQSVFDAI--TKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPD 205

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY+ L++ + +  +  +   ++ EM DNGL PN  T+ +L+  + +    +  + +Y+
Sbjct: 206 VYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYK 265

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M  +G+   +  YNTL+      G   +  ++ ++M  +   +PD  +++++I      
Sbjct: 266 QMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMN-GLKPDKISYTTLIDGSCKE 324

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           G +  A  + N+M++     +    T+LI C  +  R  D  + L  +  +G+ PD+
Sbjct: 325 GDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDN 381



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 1/214 (0%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R D   FS L+  Y  +G     +  +   K   ++    T   +L+ +   +    V  
Sbjct: 63  RSDFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWD 122

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
            YKE+ + G   +   +  L++ + +        SV+  + + G++ SV  +NTL+    
Sbjct: 123 FYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYI 182

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            +G  DE F +   M +S   QPD +T+S +I      GK+ EA  +FNEML+ G  PN 
Sbjct: 183 KLGDLDEGFRLKSAMHAS-GAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNG 241

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              T+LI  + K ++ D  +    ++   G++PD
Sbjct: 242 VTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPD 275



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 1/190 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           + Y+E+   G   ++  +N L+    +       ++++  +T  GL P+  ++ +L+  Y
Sbjct: 122 DFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGY 181

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            +    ++   +   M   G Q  V  Y+ L+      G  DEA E+F +M  +    P+
Sbjct: 182 IKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDN-GLVPN 240

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             TF+++I       KV  A  ++ +ML  G  P+L    +LI    K      V   ++
Sbjct: 241 GVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLID 300

Query: 322 RLPELGITPD 331
            +   G+ PD
Sbjct: 301 EMIMNGLKPD 310



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 54/124 (43%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++    L D       + D  +++TLI      G+ +  L +  +M    ++ + +
Sbjct: 288 KKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDV 347

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+  + R  R    + + +EM   GL P+  TY  ++  + + R  +    + REM
Sbjct: 348 AYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREM 407

Query: 218 KEKG 221
           +  G
Sbjct: 408 QRDG 411



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 45/96 (46%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++E+A  L ++   E  R+D  A++ LI      G       +  EM ++G+KP+  
Sbjct: 323 KEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNG 382

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
           TY  +++   + +       + +EM  +G  P   T
Sbjct: 383 TYTMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418


>gi|328768990|gb|EGF79035.1| hypothetical protein BATDEDRAFT_90007 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 761

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 2/218 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            + LI +   A      L  +  ++ +G+ P+++ YN+LLD+  RA        ++  M 
Sbjct: 138 LTQLIHINAIAKRPKQALESFNHIEKVGLTPDVVAYNHLLDSYSRAGDLNGAVAVFSRMQ 197

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ P+  ++++L+ A    R       +Y EMK K +Q +  +Y TL+  CA      
Sbjct: 198 TAGIFPDLVSFSTLINACVAKRDLNGAFKLYHEMKSKNIQPNQIIYTTLINGCAKTKDFA 257

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A++ F  M+ +E   PD+  F+ MI ICS       A  +F EM E G E + + LTSL
Sbjct: 258 RAWKTFNFMR-TEISLPDAVAFNLMIHICSKTEDAERAIDLFKEMSERGLEISQYTLTSL 316

Query: 304 IQ-CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           IQ C  +    ++    L ++   G  P  R    +L+
Sbjct: 317 IQACSSRHDYYNESFVLLEQMAASGFVPSIRTYNVILS 354



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 118/260 (45%), Gaps = 27/260 (10%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG++  A  ++ R +      D  +FSTLI       + +G   +Y EMK+  ++PN 
Sbjct: 181 SRAGDLNGAVAVFSRMQTAGIFPDLVSFSTLINACVAKRDLNGAFKLYHEMKSKNIQPNQ 240

Query: 157 ITYNNLLDTMGRAK---RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           I Y  L++   + K   R W  KT     T+  L P+   +  ++    +    E  + +
Sbjct: 241 IIYTTLINGCAKTKDFARAW--KTFNFMRTEISL-PDAVAFNLMIHICSKTEDAERAIDL 297

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADV-GYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           ++EM E+G+++S     +L+  C+    Y +E+F + E M +S    P   T++ +++  
Sbjct: 298 FKEMSERGLEISQYTLTSLIQACSSRHDYYNESFVLLEQMAAS-GFVPSIRTYNVILSGA 356

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  G +     ++N+++E   E  L     +IQ              LNR     I+PD+
Sbjct: 357 ARFGDILRGRLIWNDIVERMREQPLSSNPDVIQ--------------LNR-----ISPDE 397

Query: 333 RFCGCLLNVMTQTPKEELGK 352
                +L + T+  K E  K
Sbjct: 398 YIYASMLRLYTKAIKIETQK 417


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           + +  +N   +I P  FS LI  Y  +G  +  +  + +MK  G KP++ TYN++L  M 
Sbjct: 118 ILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMV 177

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           + +       +Y +M     +PN  T+  LL    +    +D L ++ EM +KG+  +  
Sbjct: 178 QKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTM 237

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +Y  +L+       TD+   +   MK S  C PDS T ++++      G++ EA A+   
Sbjct: 238 IYTIILSGLCQAKRTDDVHRLLNTMKVS-GCCPDSITCNALLDGFCKLGQIDEAFALLQL 296

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + G+   +   +SLI    +A+R D+V     ++ + GI PD
Sbjct: 297 FEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPD 340



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+N ++D + +         I +E+ ++ +     T++ L+ AY ++   E  +  + +
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK+ G +  V  YN++L +         A  ++  M    N  P+  TF  ++      G
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKL-NYNPNRATFVILLNGLCKNG 215

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K  +A  MF+EM + G  PN  + T ++    +A+RTDDV R LN +   G  PD   C 
Sbjct: 216 KTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCN 275

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK 382
            LL+   +  + +E   L++  EK     GYV+ +      I+G F+
Sbjct: 276 ALLDGFCKLGQIDEAFALLQLFEKE----GYVLGIKGYSSLIDGLFR 318



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 12/251 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ AF L      E + +    +S+LI     A  +D       +M   G++P+++
Sbjct: 283 KLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVV 342

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+              +  +MT  GLSP+   Y +L++ +      +   S+  E+
Sbjct: 343 LYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEI 402

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            +     +   Y  L+  MC + G  DEA +IF  M++   C P   TF+++I      G
Sbjct: 403 SKNDCFPTSCTYTILICGMCRN-GLLDEARQIFNQMENL-GCSPSIMTFNALIDGLCKAG 460

Query: 277 KVSEAEAMFNEMLEAGFEPNLFV--------LTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           ++ EA  +F +M E G  P+LF+        +      + +  R +D  R L+++ + G 
Sbjct: 461 ELEEARHLFYKM-EIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGC 519

Query: 329 TPDDRFCGCLL 339
           TP      CL+
Sbjct: 520 TPSSAVYKCLM 530



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G V+ A  + +         D   ++ LIK +   G  D   ++  E+      P   T
Sbjct: 354 VGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCT 413

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+  M R     + + I+ +M + G SP+  T+ +L+    +A   E+   ++ +M 
Sbjct: 414 YTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM- 472

Query: 219 EKGMQLSVTLYNTLLAMCAD-----------VGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           E G   S+ L    L+  AD           V   ++AF + + M  +  C P S  +  
Sbjct: 473 EIGKNPSLFLR---LSQGADRVMDTANGFHRVDREEDAFRVLDQMVKN-GCTPSSAVYKC 528

Query: 268 MITICSCRGKVSEAEAMFNEMLEA 291
           ++T    +GK+S A +++ + L +
Sbjct: 529 LMTWSCRKGKLSVAFSLWLKYLRS 552


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 147/311 (47%), Gaps = 26/311 (8%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA  ++T+I  +   G+ +   +++ EM   G+ P++ TYN +++ + +A+   + + I
Sbjct: 214 PNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAI 273

Query: 179 YKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
            ++M D G+ P NW TY SL+  Y      ++ + V ++M  +G+   V   N+L+A   
Sbjct: 274 LRQMVDKGVLPDNW-TYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLC 332

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G   +A ++F+ M + +  + D +++  M+   + +G + +   +FN ML  G  P+ 
Sbjct: 333 KHGKIKDARDVFDSM-AMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDS 391

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
            +   LI+ Y K    D      N + E G+ PD      ++  + +     +GK+ + V
Sbjct: 392 HIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCR-----IGKMDDAV 446

Query: 358 EKSNSKLGYVV-------KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDL-CV 409
           EK N  +   V         L++     GD  K    +   ++K ++        D+ C 
Sbjct: 447 EKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRP-------DIGCF 499

Query: 410 NLNLLENACKL 420
           N  ++ N CKL
Sbjct: 500 NF-IINNLCKL 509



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 124/262 (47%), Gaps = 8/262 (3%)

Query: 89  KLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 148
           K+    Y T+   V++   L++   ++    D + F+ LIK Y   G  D    ++ EM+
Sbjct: 360 KIMLNGYATKGCLVDLT-ELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMR 418

Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRAR 205
             GV+P+++TY+ ++  + R  +       + +M D G++P+ +TY  L++ +   G   
Sbjct: 419 EQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLL 478

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             +D   +  +M  KGM+  +  +N ++     +G   +A  IF D   S    P+   +
Sbjct: 479 KAKD---LVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIF-DFTISIGLHPNVMVY 534

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++++      GK+  A  +F+ M+ AG +PN+ V  +L+  Y K  R D+ +     +  
Sbjct: 535 NTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILH 594

Query: 326 LGITPDDRFCGCLLNVMTQTPK 347
            GI P       +L+ + Q  +
Sbjct: 595 KGIKPSTTLYNIILHGLFQAGR 616



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 105/208 (50%), Gaps = 2/208 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +E A  ++D   +   + +   + TL+  Y   G  D  L+++ E+   G+KP+   
Sbjct: 544 VGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTL 603

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +L  + +A R    K  + EMT++G++ +  TY+ +L    +    ++ + +++E+ 
Sbjct: 604 YNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELH 663

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              +++ +T  N ++A    +   +EA ++F  + S     P   T+S M+T     G V
Sbjct: 664 AMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASI-SRSGLVPSVVTYSIMMTNLIKEGLV 722

Query: 279 SEAEAMFNEMLEAGFE-PNLFVLTSLIQ 305
            EA+ MF+ M  AG E PN  +L  +++
Sbjct: 723 EEADDMFSSMENAGCEQPNSQLLNHVVR 750



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 143/329 (43%), Gaps = 20/329 (6%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G +P S+I+          +  K+Y  + G ++ A  +++  R +    D   +ST+I  
Sbjct: 386 GIAPDSHIF---------NVLIKAY-AKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAA 435

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
               G  D  +  + +M   GV P++ TY+ L+          + K +  +M + G+ P+
Sbjct: 436 LCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPD 495

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
              +  ++    +     D  +++      G+  +V +YNTL+     VG  + A  +F+
Sbjct: 496 IGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFD 555

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            M S+   QP+   + +++      G++ E  ++F E+L  G +P+  +   ++    +A
Sbjct: 556 VMVSA-GIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQA 614

Query: 311 QRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK 369
            RT       + + E GI  D   +   L  +   +  +E   L + +   N K+     
Sbjct: 615 GRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTL 674

Query: 370 LLLEEQDIEGDFK----KEATELFNSISK 394
            ++    I G F+    +EA +LF SIS+
Sbjct: 675 NIM----IAGMFQIRRVEEAKDLFASISR 699



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/333 (19%), Positives = 143/333 (42%), Gaps = 8/333 (2%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           + K G   ++ I  N    +  +    +Y T      R G ++ A   +++  ++     
Sbjct: 401 YAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPS 460

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
            + +  LI+ + T G+     ++  +M   G++P++  +N +++ + +  R    + I+ 
Sbjct: 461 ISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFD 520

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
                GL PN   Y +L+  Y      E+ L V+  M   G+Q +V +Y TL+     VG
Sbjct: 521 FTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVG 580

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             DE   +F ++   +  +P +  ++ ++      G+   A+  F+EM E+G   + +  
Sbjct: 581 RIDEGLSLFREIL-HKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTY 639

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
           + ++    K   +D+ +     L  + +  D      ++  M Q  + EE   L   + +
Sbjct: 640 SIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISR 699

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           S      V   ++    I+    +EA ++F+S+
Sbjct: 700 SGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSM 732



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 6/185 (3%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P + TY  L+D   RA RP      + ++   GL  +    ++LLR    A+   + L
Sbjct: 104 LSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEAL 163

Query: 212 SVY-REMKEKGMQLSVTLYNTLL-AMCAD--VGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
            +    M   G    V  Y  +L ++C+D   G  DE   +  +      C P++  +++
Sbjct: 164 DILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAE--GGAVCLPNAVAYNT 221

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           +I      G V++A  +FNEM++ G  P+L     ++    KA+  D     L ++ + G
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281

Query: 328 ITPDD 332
           + PD+
Sbjct: 282 VLPDN 286


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN   +S+L++ Y  +G ++    V+ EM   G++P+++ Y  L+D++ +  +  +  
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +   M   GL PN  TY  L+    +    ++ + V ++M EKG+   V  YNTL+   
Sbjct: 241 GVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 237 ADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           +DV   DEA  + E+M   +N  +P+  TF+S+I      G++ +A  +   M E G   
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMV 360

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           NL     LI    +  +    +  ++ +  LG+ PD
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPD 396



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 5/200 (2%)

Query: 121 PNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA S  + +     +   D  + +   M++ GV+ +++TY  L+  +  A    +   +
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM ++G+ PN   Y+SLL+ Y ++   ED   V+ EM EKG++  V +Y  L+     
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNL 297
           VG   +A  +  DM      +P+  T++ +I  C C+ G V EA  +  +M E G  P++
Sbjct: 233 VGKAKKAHGVM-DMMVRRGLEPNVVTYNVLIN-CMCKEGSVKEAIGVLKKMSEKGVAPDV 290

Query: 298 FVLTSLIQCYGKAQRTDDVV 317
               +LI+        D+ +
Sbjct: 291 VTYNTLIKGLSDVLEMDEAM 310



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 1/179 (0%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +PN ++Y  L+  +   +   Q   + + M   G+  +  TY +L+R    A   +  + 
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +  EM E G++ +V +Y++LL      G  ++  ++F +M S +  +PD   ++ +I   
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEM-SEKGIEPDVVMYTGLIDSL 230

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              GK  +A  + + M+  G EPN+     LI C  K     + +  L ++ E G+ PD
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 104/256 (40%), Gaps = 37/256 (14%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   F+++I+     G       V   M+  G   N++TYN L+  + R  +  +  
Sbjct: 323 VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAM 382

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGR---ARYGEDTLSVYRE----------------M 217
            +  EMT  GL P+  TY+ L++ + +       ED LS  R+                M
Sbjct: 383 ELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAM 442

Query: 218 KEKGMQ---------------LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            E+GM                L V  Y+T++      G    A E+ + +   E   PD+
Sbjct: 443 CEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSI-VDEGLTPDA 501

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T+S +I + +  G +  A  +  +M  +GF P++ V  SLIQ Y      + V+  +  
Sbjct: 502 VTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIRE 561

Query: 323 LPELGITPDDRFCGCL 338
           +    I  D +    L
Sbjct: 562 MITKNIALDSKIISTL 577



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 107 GLYDRARN------EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           G+ +RARN        + +D  A+ST+I     AG+      + + +   G+ P+ +TY+
Sbjct: 446 GMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYS 505

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            +++   ++        + K+MT +G  P+   + SL++ Y         L + REM  K
Sbjct: 506 IVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITK 565

Query: 221 GMQLSVTLYNTL 232
            + L   + +TL
Sbjct: 566 NIALDSKIISTL 577


>gi|302775192|ref|XP_002971013.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
 gi|300160995|gb|EFJ27611.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
          Length = 413

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 2/245 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG    AF + +   + K  I  NA+++LI      G+    + ++E MK   V P +
Sbjct: 3   SRAGRRRTAFKVLEWLSDRKRGIHANAYNSLITGLMKDGDEADAIAIFERMKHDRVAPTL 62

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            TY  ++  +   +       ++ E+  +G L P+   Y ++L AYGR    E  L  + 
Sbjct: 63  YTYTAVMRALSHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWE 122

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M+++G   +V  Y  L++        D A + +  M +S+  +     +  ++ +C+ +
Sbjct: 123 RMQKEGCVENVGTYCLLVSTFVQTNQADLALDAYARM-NSQGLKATDGIYRGLVCVCATQ 181

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G+   A   F EMLE+G +P +     L++  GKA + + V+  L R+   G+ PD    
Sbjct: 182 GRWLVALTFFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTV 241

Query: 336 GCLLN 340
             +LN
Sbjct: 242 NAVLN 246



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++A   Y R  ++  +     +  L+ +  T G +   L  ++EM   G KP ++TYN L
Sbjct: 150 DLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNVL 209

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +  +G+A +   V  +   M  +G++P++ T  ++L     AR  +  +  +  +K  GM
Sbjct: 210 MRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGM 269

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +L   +YN +L  C      + A  + ++M+ +    P+  TF  ++  C    +V  A 
Sbjct: 270 KLDREVYNVILVACQKSKNWEAALSLVQEMEQT-GIAPNEVTFGPLLVACENAKQVEVAL 328

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGK 309
            ++  M +    PN  V+ SLI+  GK
Sbjct: 329 RLYEHMKQRRCVPNTHVVASLIRACGK 355



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 103/238 (43%), Gaps = 6/238 (2%)

Query: 105 AFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNN 161
           A  +++R +++  R+ P    ++ +++       ++    ++ E+   G +KP++  YN 
Sbjct: 46  AIAIFERMKHD--RVAPTLYTYTAVMRALSHVQGWESAHRMFSELVVHGSLKPDVAMYNT 103

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +L   GR  +  +V   ++ M   G   N  TY  L+  + +    +  L  Y  M  +G
Sbjct: 104 MLAAYGRGHKLERVLQTWERMQKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQG 163

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +  +Y  L+ +CA  G    A   F++M  S  C+P   T++ ++      GK    
Sbjct: 164 LKATDGIYRGLVCVCATQGRWLVALTFFKEMLES-GCKPTIVTYNVLMRALGKAGKWEIV 222

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             +   M  +G  P+ + + +++     A+  D  +   + +   G+  D      +L
Sbjct: 223 LDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGMKLDREVYNVIL 280



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           A   + A   +   ++   ++D   ++ ++     + N++  L++ +EM+  G+ PN +T
Sbjct: 251 AREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVT 310

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +  LL     AK+      +Y+ M      PN +  ASL+RA G+    +   ++YR   
Sbjct: 311 FGPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYRVSS 370

Query: 219 EKGMQLSVTLYNTLL-AMCADVGY 241
                 +V +YN L+ A C    Y
Sbjct: 371 P-----NVYVYNALIDAYCRSQKY 389


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 3/233 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GNV  A GL D     ++ +D   +  LI      G+    +    +M+    KPN++ Y
Sbjct: 161 GNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVY 220

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + ++D + +     +   +  EM+  G+ PN  TYA L++        ++T S+  EM +
Sbjct: 221 STIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIK 280

Query: 220 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            GM+L +   N L+ A C + G   +A  +   M  +    PD +T++S+I I   + K+
Sbjct: 281 MGMRLDLQTLNILVDAFCKE-GKVMQAKSVIGFMILTGE-GPDVFTYNSLIHIYCLQNKM 338

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +EA  +F+ M+  G  P++ V TSLI  + K +  + V+  L  + ++G  PD
Sbjct: 339 NEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPD 391



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 128/297 (43%), Gaps = 4/297 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+   A     +     W+ +   +ST++      G     LN+  EM   GV+PN++
Sbjct: 194 KTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLV 253

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +    R  +  ++  EM   G+  +  T   L+ A+ +        SV   M
Sbjct: 254 TYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFM 313

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G    V  YN+L+ +       +EA  +F  M  S  C PD   F+S+I    C+ K
Sbjct: 314 ILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLM-VSRGCLPDIVVFTSLIH-GWCKDK 371

Query: 278 -VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +++   +  EM + GF P++   T+LI  + +A R          + + G  P+ + C 
Sbjct: 372 NINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCA 431

Query: 337 CLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
            +L+ + +     E   L E +EKSN  L  V+  +L +          A ELF+S+
Sbjct: 432 VILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSL 488



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 85/209 (40%), Gaps = 36/209 (17%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F++LI  +    N +  +++ EEM  +G  P+++T+  L+    +A RP   K ++
Sbjct: 356 DIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELF 415

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-------------------- 219
             M   G  PN  T A +L    +     + +S+   M++                    
Sbjct: 416 LNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSA 475

Query: 220 ---------------KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                          KG+Q++V  Y  ++      G  D+A ++  +M+ +  C PD+ T
Sbjct: 476 GKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEEN-GCLPDNCT 534

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGF 293
           ++  +     + +++ +      M + GF
Sbjct: 535 YNVFVQGLLTKKEIARSIKYLTIMRDKGF 563


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 114/278 (41%), Gaps = 36/278 (12%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  +    + E+ R     F  +I  +  AG     L+V++ M+  G  P + T+
Sbjct: 565 GTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTF 624

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+  +   ++  +   I  EM   G+SPN +TY +++  Y            + ++++
Sbjct: 625 NALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRD 684

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---------------------- 257
           +G+QL V  Y  LL  C   G    A  + ++M S++N                      
Sbjct: 685 EGLQLDVYTYEALLKACCKSGRMQSALAVTKEM-SAQNIPRNTFVYNILIDGWARRGDVW 743

Query: 258 -------------CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
                         +PD  T++S I  C   G +  A  M  EM  +G +PN+   T+LI
Sbjct: 744 EAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLI 803

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
             + +A   +  +R    +   G+ PD     CL+  +
Sbjct: 804 HGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTAL 841



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 112/232 (48%), Gaps = 1/232 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N++ A  L      E      + + T++  Y   GN + CL V+E +K  G  P++++Y 
Sbjct: 426 NMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYG 485

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L++   +  +  +   + K M   G+  N  TY+ L+  + + +   +  +++ ++ + 
Sbjct: 486 CLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKD 545

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++  V LYN ++     +G  D A  + ++M+  E  +P S TF  +I   +  G++  
Sbjct: 546 GLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQ-KERHRPTSRTFMPIIHGFARAGEMKR 604

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           A  +F+ M  +G  P +    +LI    + ++ +  +  L+ +   G++P++
Sbjct: 605 ALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNE 656



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 105/225 (46%), Gaps = 10/225 (4%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           N+   ++ +E +K    KP+   Y  ++    R     + +  ++ M   G+ P  + Y 
Sbjct: 290 NWQDVVSAFERIK----KPSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYT 345

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           SL+ AY   R  E+ LS  R+MKE+G+++S+  Y+ ++   A +G  D A   F++ K  
Sbjct: 346 SLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAK-D 404

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
            +   ++  + +MI        + +AEA+  EM   G +  + +  +++  Y      + 
Sbjct: 405 RHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEK 464

Query: 316 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
            +    RL E G  P     GCL+N+  +     +GK+ + +E S
Sbjct: 465 CLTVFERLKECGFAPSVVSYGCLINLYAK-----VGKISKALEVS 504



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 7/220 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+   AF  + + R+E  ++D   +  L+K    +G     L V +EM A  +  N   Y
Sbjct: 670 GDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVY 729

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   R    W+   + ++M   G+ P+ +TY S + A  +A        +  EM+ 
Sbjct: 730 NILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMET 789

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++ +V  Y TL+   A     ++A   F++MK +   +PD   +  ++T    R  V+
Sbjct: 790 SGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLA-GLKPDKAVYHCLMTALLSRATVT 848

Query: 280 EAE------AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
           EA       ++  EM+E+G   ++       +   K +RT
Sbjct: 849 EAYVRPGILSICKEMIESGLIVDMGTAVHWSKSLRKIERT 888



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +++    +  + D   ++ +I+ +   G  D  + + +EM+    +P   T+  ++ 
Sbjct: 535 AFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIH 594

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              RA    +   ++  M  +G  P  +T+ +L+      R  E  + +  EM   G+  
Sbjct: 595 GFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSP 654

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y T++   A +G T +AFE F  ++  E  Q D +T+ +++  C   G++  A A+
Sbjct: 655 NEHTYTTIMHGYAALGDTGKAFEYFTKLR-DEGLQLDVYTYEALLKACCKSGRMQSALAV 713

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EM       N FV   LI  + +     +    + ++ + G+ PD
Sbjct: 714 TKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPD 760



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 110/251 (43%), Gaps = 9/251 (3%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           SY  R G++  A   ++  R        + +++LI  Y    + +  L+   +MK  GV+
Sbjct: 314 SYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVE 373

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
            +++TY+ ++    +          +KE  D     N   Y +++ AY +    +   ++
Sbjct: 374 MSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEAL 433

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
            REM+ +G+   + +Y+T++     VG  ++   +FE +K      P   ++  +I + +
Sbjct: 434 VREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKEC-GFAPSVVSYGCLINLYA 492

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-- 331
             GK+S+A  +   M  AG + N+   + LI  + K +   +       + + G+ PD  
Sbjct: 493 KVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVV 552

Query: 332 ------DRFCG 336
                   FCG
Sbjct: 553 LYNNIIRAFCG 563


>gi|21618238|gb|AAM67288.1| unknown [Arabidopsis thaliana]
          Length = 463

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLIK Y      D    V   M+  G++P++ TYN+L+    +     +V  ++
Sbjct: 42  DVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLF 101

Query: 180 KEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            EM  +GLSP+  +Y +L+  Y +  R+GE    ++ ++   G+   +  YN LL     
Sbjct: 102 DEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCK 161

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            G+TD A E+F+ +KS    +P+  T++ +I  +C  R +V   + M  E+ ++G+ PN 
Sbjct: 162 SGHTDNAIELFKHLKS--RVKPELMTYNILINGLCKSR-RVGSVDWMMRELKKSGYTPNA 218

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC-LLNVMTQTPKEE 349
              T++++ Y K +R +  ++   ++ + G T D  F  C +++ + +T + E
Sbjct: 219 VTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDG-FANCAVVSALIKTGRAE 270



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L+     +G+ D  + +++ +K+  VKP ++TYN L++ + +++R   V  + +E
Sbjct: 150 DTYNILLDALCKSGHTDNAIELFKHLKS-RVKPELMTYNILINGLCKSRRVGSVDWMMRE 208

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +  +G +PN  TY ++L+ Y + +  E  L ++ +MK++G          +++     G 
Sbjct: 209 LKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGR 268

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            +EA+E   ++  S     D  ++++++ +    G +   + +  E+   G +P+ +  T
Sbjct: 269 AEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHT 328

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            ++        T    + L  + E+G+ P    C CL++
Sbjct: 329 IIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLID 367


>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Brachypodium distachyon]
          Length = 502

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 8/248 (3%)

Query: 97  TRAGNVEMAFGLYDRAR-NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +R+G+ + AF L DR +     R D   +S LIK    A +FD   ++  +M   G++PN
Sbjct: 197 SRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPN 256

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TYN L+D  G+A R  ++++   EM      P+  T  S LRA+G +   E   S Y 
Sbjct: 257 TVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMESCYE 316

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           + +  G+  ++  YN LL         ++   + E M+        SWT  +   +    
Sbjct: 317 KFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYY----SWTIVTYNVVIDAF 372

Query: 276 GKVSEAEAM---FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           G+  + E M   F  M     +PN   L SLI+ YG+A +   +   L  +     T D 
Sbjct: 373 GRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSDTTLDI 432

Query: 333 RFCGCLLN 340
            F  CL++
Sbjct: 433 VFFNCLVD 440



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 116/230 (50%), Gaps = 4/230 (1%)

Query: 133 TAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
            A  ++  L V+E M+  +  +P +  Y  L+  +G+ K+P +   +++ M D G +PN 
Sbjct: 127 AALRWESALKVFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNL 186

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
            +Y +L+ AY R+   +   S+   MK   G +  V  Y+ L+  C      D+  ++  
Sbjct: 187 ESYTALVSAYSRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLA 246

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           DM +    +P++ T+++++      G+ +E E+   EML    +P+++ + S ++ +G +
Sbjct: 247 DM-ACGGIRPNTVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSS 305

Query: 311 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
            + + +     +    GI+P+ +    LL+   +    E++G ++E ++K
Sbjct: 306 GQIEMMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQK 355



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +G +EM    Y++ +     I PN   ++ L+  YG A  ++    V E M+       +
Sbjct: 305 SGQIEMMESCYEKFQASG--ISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTI 362

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN ++D  GRA    Q++ I++ M  + + PN  T  SL+RAYGRA   +   +V R 
Sbjct: 363 VTYNVVIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRI 422

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           ++     L +  +N L+     VG   E +++   MK  E   PD  T ++MI
Sbjct: 423 IENSDTTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMK-LERVSPDKVTCTTMI 474



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 61/130 (46%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +I  +G AG+ +    ++  MK+  +KPN +T  +L+   GRA +  +++T+ + + 
Sbjct: 365 YNVVIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIE 424

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           ++  + +   +  L+ AYGR     +   V   MK + +        T++      G  D
Sbjct: 425 NSDTTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDKVTCTTMIKWFLVKGIDD 484

Query: 244 EAFEIFEDMK 253
              +   D+K
Sbjct: 485 HRVQHLRDLK 494


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 117/223 (52%), Gaps = 8/223 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            G +E A  ++D   +    I+PN   + TL+  Y   G  D  L+++ EM   G+KP+ 
Sbjct: 550 VGKMEKALRVFDAMVSAG--IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPST 607

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           I Y+ ++D +  A R    K  + EMT++G++ +  TY  +LR   + R  ++ + +++E
Sbjct: 608 ILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKE 667

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++   +++++   NT++         +EA ++F  +  S    P   T+S MIT     G
Sbjct: 668 LRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSR-LVPSVVTYSIMITNLIKEG 726

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
            V EAE MF+ M  AG EPN  +L  +++   +  + +++VRA
Sbjct: 727 LVEEAEDMFSSMQNAGCEPNSRLLNHVVR---ELLKKNEIVRA 766



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 144/309 (46%), Gaps = 22/309 (7%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  A++T+I  +   G+ +   ++++EM   G+ P+++TYN+++  + +A+   + +  
Sbjct: 220 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 279

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            ++M +  + PN  TY +L+  Y      ++ + V++EM+   +   V   + L+     
Sbjct: 280 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 339

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA ++F+ M + +   PD ++++ M+   + +G + +   +F+ ML  G  P+ +
Sbjct: 340 YGKIKEARDVFDTM-AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFY 398

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
               LI+ Y      D  +   N + + G+ PD      ++  + +     +GK+ + +E
Sbjct: 399 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR-----IGKMDDAME 453

Query: 359 KSNSKLG-------YVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNL 411
           K N  +        Y    L++     G   K A EL + I  +         +D+    
Sbjct: 454 KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLK-AKELISEIMNNGMH------LDIVFFS 506

Query: 412 NLLENACKL 420
           +++ N CKL
Sbjct: 507 SIINNLCKL 515



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 42/250 (16%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCL----NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +P+ FS  I L G A    GCL    ++++ M   G+ P+  T+N L+          + 
Sbjct: 359 NPDVFSYNIMLNGYATK--GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 416

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--------------- 220
             I+ EM D+G+ P+  TY +++ A  R    +D +  + +M ++               
Sbjct: 417 MIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG 476

Query: 221 --------------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
                               GM L +  +++++     +G   +A  IF D+  +    P
Sbjct: 477 FCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHP 535

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D+  ++ ++      GK+ +A  +F+ M+ AG EPN+    +L+  Y K  R D+ +   
Sbjct: 536 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 595

Query: 321 NRLPELGITP 330
             + + GI P
Sbjct: 596 REMLQRGIKP 605



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/333 (19%), Positives = 141/333 (42%), Gaps = 8/333 (2%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +   G   K+ I  N       K    +Y T      R G ++ A   +++  ++    D
Sbjct: 407 YANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 466

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
             A++ LI+ + T G+      +  E+   G+  +++ ++++++ + +  R    + I+ 
Sbjct: 467 KYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFD 526

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
              + GL P+   Y  L+  Y      E  L V+  M   G++ +V  Y TL+     +G
Sbjct: 527 LTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIG 586

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             DE   +F +M      +P +  +S +I      G+   A+  F+EM E+G   ++   
Sbjct: 587 RIDEGLSLFREM-LQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTY 645

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
             +++   K +  D+ +     L  + +  +      +++ M QT + EE   L   + +
Sbjct: 646 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 705

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           S      V   ++    I+    +EA ++F+S+
Sbjct: 706 SRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSM 738



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
           LSP  +TYA L+    RA   E  L+ + ++   G+++++ + N LL    +   TDEA 
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF--EPNLFVLTSLI 304
           +I         C PD +++S ++     +GK  +A+ +   M E G    PN+    ++I
Sbjct: 170 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 229

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             + K    +        + + GI PD
Sbjct: 230 DGFFKEGDVNKACDLFKEMVQRGIPPD 256



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 17/240 (7%)

Query: 104 MAFGLYDRA--RNEKWRI---DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +A  L++RA  R +  R+     + ++ L+     A   +  L  + ++   G++ N+I 
Sbjct: 92  LAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIII 151

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 214
            N+LL+    AKR  +   I    T + G  P+  +Y+ LL++    G++   +D L   
Sbjct: 152 ANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLL--- 208

Query: 215 REMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TI 271
           R M E G   S  V  YNT++      G  ++A ++F++M       PD  T++S++  +
Sbjct: 209 RMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEM-VQRGIPPDLVTYNSVVHAL 267

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           C  R  + +AEA   +M+     PN +   +LI  Y    +  + VR    +    I PD
Sbjct: 268 CKARA-MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 326



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 2/183 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P   TY  L+D   RA RP      + ++   GL  N      LL  +  A+  ++ L
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 212 SVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMI 269
            +      E G    V  Y+ LL    D G + +A ++   M +    C P+   ++++I
Sbjct: 170 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 229

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
                 G V++A  +F EM++ G  P+L    S++    KA+  D     L ++    + 
Sbjct: 230 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 289

Query: 330 PDD 332
           P++
Sbjct: 290 PNN 292


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 11/280 (3%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPN 122
           + G +P +    +  + +   +    Y+T      RAG V+ A G+ D  +     +DPN
Sbjct: 181 RVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAG--VDPN 238

Query: 123 A--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              ++  I  Y      +   ++YE M   GV  +++T + L+  + R  R  +   +++
Sbjct: 239 VATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFR 298

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM   G +PN  TY +L+ +  +A  G++ LS+  EM  +G+ + +  Y  L+      G
Sbjct: 299 EMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQG 358

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            TDE  +       S+N  P+  T++ +I        V EAE +  EM E    PN+   
Sbjct: 359 KTDEVKDTLR-FALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTF 417

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           +S+I  + K    D        + E GI P+    G L++
Sbjct: 418 SSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 1/220 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           RN   + D + ++T+I  +   G     L +  EMK   +KPN+ITYN L+  +      
Sbjct: 581 RNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAV 640

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + K +  EM   G SP+  T+  +L+A  ++R  +  L ++  M   G+   +T+YNTL
Sbjct: 641 EKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTL 700

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           L +    G T +A  + E+M  S    PD+ TF+++I        +  A A + +ML   
Sbjct: 701 LQVLCYHGMTRKATVVLEEMLGS-GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQN 759

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             PN+    +L+       R  +    L  + + G+ P++
Sbjct: 760 ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNN 799



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 4/220 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  L DR       +D   ++TLI  Y   G+    L+V + M A G+  +++
Sbjct: 147 RNGQVDAAAALADRG-GGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVV 205

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+    RA +    + +   M + G+ PN  TY   +  Y R +  E+   +Y  M
Sbjct: 206 GYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGM 265

Query: 218 KEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
              G+ L V   + L+A +C D G   EA+ +F +M       P+  T+ ++I   +  G
Sbjct: 266 VRNGVLLDVVTLSALVAGLCRD-GRFSEAYALFREMDKV-GAAPNHVTYCTLIDSLAKAG 323

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           +  E  ++  EM+  G   +L   T+L+   GK  +TD+V
Sbjct: 324 RGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEV 363



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 131/318 (41%), Gaps = 9/318 (2%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  R   VE AF LY+        +D    S L+      G F     ++ EM  +G  P
Sbjct: 248 YYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAP 307

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N +TY  L+D++ +A R  ++ ++  EM   G+  +  TY +L+   G+    ++     
Sbjct: 308 NHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTL 367

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           R      +  +   Y  L+         DEA ++  +M+  ++  P+  TFSS+I     
Sbjct: 368 RFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEME-EKSISPNVVTFSSVINGFVK 426

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           RG + +A      M E G  PN+    +LI  + K Q  D  +   + +   G+  +   
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFI 486

Query: 335 CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV-----VKLLLEEQDIEGDFKKEATEL 388
              L+N + Q  K EE   L +    S   L +V     +  L +  D+   FK     +
Sbjct: 487 VDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELM 546

Query: 389 FNSISKD--VKKAYCNCL 404
             ++  D  V   + NCL
Sbjct: 547 DRNMLPDAVVYNVFINCL 564



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 1/204 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+ LI  +  + + D     Y +M    + PN+ T+N LL  +    R  +  T+ 
Sbjct: 728 DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVL 787

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM  +GL PN  TY  L   +G+     + + +Y EM  KG    V+ YN L++     
Sbjct: 788 IEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKA 847

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A E+F+DM+      P S T+  +++  S     +E +    +M E GF P+   
Sbjct: 848 GMMTQAKELFKDMQ-KRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGT 906

Query: 300 LTSLIQCYGKAQRTDDVVRALNRL 323
           L+ + + + K   T    R L  L
Sbjct: 907 LSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 5/234 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  L+  A      +D   ++TLI     AG+        +E+    + P+ + Y
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N  ++ +    +  + K+   EM + GL P+ +TY +++ ++ R       L +  EMK 
Sbjct: 558 NVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             ++ ++  YNTL+A     G  ++A  +  +M S+    P S T   ++  CS   ++ 
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSA-GFSPSSLTHRRVLQACSQSRRLD 676

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQ--CYGKAQRTDDVVRALNRLPELGITPD 331
               +   M+ AG   ++ V  +L+Q  CY    R   VV  L  +   GI PD
Sbjct: 677 VILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVV--LEEMLGSGIAPD 728



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E+  I PN   FS++I  +   G  D        MK  G+ PN++TY  L+D   + +  
Sbjct: 406 EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQ 465

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                +Y +M   G+  N     SL+    +    E+ ++++++    G+ L    Y TL
Sbjct: 466 DAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTL 525

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G    AF+  +++    N  PD+  ++  I      GK  EA++   EM   G
Sbjct: 526 IDGLFKAGDMPTAFKFGQELM-DRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMG 584

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +P+     ++I  + +   T   ++ L+ +    I P+
Sbjct: 585 LKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPN 623



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 89/193 (46%), Gaps = 5/193 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           ++ +++ AF  Y +  ++   I PN   F+TL+    + G       V  EM+  G++PN
Sbjct: 741 KSSHLDNAFATYAQMLHQN--ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TY+ L    G+     +   +Y EM   G  P  +TY +L+  + +A        +++
Sbjct: 799 NLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFK 858

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M+++G+  +   Y+ L++  + +    E  +  +DMK  +   P   T S +    S  
Sbjct: 859 DMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMK-EKGFSPSKGTLSFICRAFSKP 917

Query: 276 GKVSEAEAMFNEM 288
           G   +A+ +   +
Sbjct: 918 GMTWQAQRLLKNL 930


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 113/232 (48%), Gaps = 2/232 (0%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +  + F  +++ Y  A      +  +E+M   G+K  +  YN L+DT+ ++K+  + + I
Sbjct: 197 LSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAI 256

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           YKEM   G   P+  TY  L+  +G  +      ++Y+EM + G++  V  Y  L++   
Sbjct: 257 YKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFC 316

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  DEA ++F +M++S  C P    +  +I       ++ EA   F +  ++GF   +
Sbjct: 317 KSGKCDEAIKVFYEMEAS-GCMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEV 375

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
               +++  Y +A + +   + ++ + E  I P+ R    +L+ + ++ K E
Sbjct: 376 PTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFE 427



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 16/261 (6%)

Query: 73  SPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG 132
           S  ++  +  +  RA K+KE        ++   FGL     +  W ID  + S  +K   
Sbjct: 198 SKDTFKLIVRRYARARKVKEAVETFEKMSI---FGLKTELSDYNWLIDTLSKSKQVK--- 251

Query: 133 TAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
                     +Y+EMK  G   P++ TY  L++  G  K    VKT+Y+EM D G+ P+ 
Sbjct: 252 ------KAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDV 305

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
             Y  L+ A+ ++   ++ + V+ EM+  G   S  +Y  L+         DEA + FE 
Sbjct: 306 VAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEQ 365

Query: 252 MKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            K S    P      + +    CR  K   A  M +EM E    PN      ++    K+
Sbjct: 366 YKKSGF--PMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKS 423

Query: 311 QRTDDVVRALNRLPELGITPD 331
           Q+ ++      R+   G  P 
Sbjct: 424 QKFEEAYNVFQRMGMDGCEPQ 444



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 1/210 (0%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P+ +  LI   G+    D  L  +E+ K  G    + T N ++    RA +      +  
Sbjct: 340 PHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVD 399

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM +  + PN  TY  +L    +++  E+  +V++ M   G +  +  Y  ++ M    G
Sbjct: 400 EMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNG 459

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             D A  +++ M       P    FS++I       ++ EA   F EML+ G  P   + 
Sbjct: 460 RVDMALNVWKQM-GERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLF 518

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           ++L +   +  R        ++L  +  TP
Sbjct: 519 SNLKEALVEGGRISLAQEMASKLDAIRKTP 548



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/184 (18%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A   +++ +   + ++    + ++  Y  A  F+    + +EM+   + PN  TY+ +L 
Sbjct: 359 ALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILH 418

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + ++++  +   +++ M  +G  P  NTY  ++  +      +  L+V+++M E+G+  
Sbjct: 419 YLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLP 478

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            + +++ L+         +EA   F++M   +  +P    FS++       G++S A+ M
Sbjct: 479 CMHMFSALINGLCFENRLEEACVYFQEM-LDKGIRPPGQLFSNLKEALVEGGRISLAQEM 537

Query: 285 FNEM 288
            +++
Sbjct: 538 ASKL 541



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 4/137 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RA   E AF + D  R  + +I PN+  +  ++     +  F+   NV++ M   G +P 
Sbjct: 387 RASKFEHAFKMVDEMR--ECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQ 444

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY  ++       R      ++K+M + G+ P  + +++L+         E+    ++
Sbjct: 445 LNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQ 504

Query: 216 EMKEKGMQLSVTLYNTL 232
           EM +KG++    L++ L
Sbjct: 505 EMLDKGIRPPGQLFSNL 521



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 52/106 (49%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  ++   E A+ ++ R   +      N ++ ++ ++ + G  D  LNV+++M   GV P
Sbjct: 419 YLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLP 478

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
            M  ++ L++ +    R  +    ++EM D G+ P    +++L  A
Sbjct: 479 CMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEA 524


>gi|410110139|gb|AFV61149.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           salviifolia]
          Length = 378

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 121 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 180

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 181 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 240

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 241 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGE 295

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             ++ V   +I    K ++  +V    +++  LG  PD      +LN
Sbjct: 296 VKDITVFERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSDVIAIVLN 342



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMK  GV PN  +Y+ LL 
Sbjct: 7   AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLS 66

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 67  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 126

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 127 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 186

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 187 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 245

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 246 AGLVAHAKRLLHELKRPDNIPRD 268



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 36/231 (15%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           ++   ++++  +K  G  P+++ YN +++  G+AK   + +++  EM   G+ PN  +Y+
Sbjct: 3   DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 62

Query: 196 SLLRAYGRARYGEDTLSVYREMKE-----------------------------------K 220
           +LL  Y   +   + LSV+ EM+E                                    
Sbjct: 63  TLLSMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 122

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++ +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +
Sbjct: 123 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEK 181

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A  +  EM   G EPN    +++I  +GK  + D       +L   G+  D
Sbjct: 182 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEID 232



 Score = 42.0 bits (97), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG V  A     R  +E  R D     T I +   AG  +    V+ +    G   ++ 
Sbjct: 245 RAGLVAHA----KRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDIT 300

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++  + + K+   V  ++ +M   G  P+ +  A +L AYG+ +  +    VY EM
Sbjct: 301 VFERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 360

Query: 218 KEKGMQLSVTLYNTLLAM 235
           +E G   S  ++  +L++
Sbjct: 361 QEVGCVFSDEVHFQMLSL 378


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 1/224 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A   +D+   + +++D  ++ TLI     AG       +  +++   VKP+++ Y
Sbjct: 145 GEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMY 204

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             ++  + + K       +Y EM   G+SPN  TY +L+  +      ++  S+  EMK 
Sbjct: 205 TTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKL 264

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           K +   V  +N L+   A  G  DEA  +FE+MK  +N  P+  T++S+I        + 
Sbjct: 265 KNINPDVYTFNILIDALAKEGKIDEAMSLFEEMK-HKNMFPNIVTYTSLIDGLCKNHHLE 323

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            A A+  +M E G +PN++  T L+    K  R ++  +    L
Sbjct: 324 RAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHL 367



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 109/231 (47%), Gaps = 1/231 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           ++  AF ++       +  +    +TLIK     G     L+ ++++ A G + + ++Y 
Sbjct: 111 HITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYG 170

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L++ + +A     V  + +++  + + P+   Y +++    + +   D   +Y EM  K
Sbjct: 171 TLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVK 230

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+  +V  Y TL+     +G   EAF +  +MK  +N  PD +TF+ +I   +  GK+ E
Sbjct: 231 GISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMK-LKNINPDVYTFNILIDALAKEGKIDE 289

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A ++F EM      PN+   TSLI    K    +  +    ++ E GI P+
Sbjct: 290 AMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPN 340



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 1/194 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GN++ AF L +  + +    D   F+ LI      G  D  ++++EEMK   + PN++TY
Sbjct: 250 GNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTY 309

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +L+D + +     +   + K+M + G+ PN  +Y  LL A  +    E+    ++ +  
Sbjct: 310 TSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLV 369

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG  L+V  YN ++      G   +  ++   M+  + C P++ TF ++I     + +  
Sbjct: 370 KGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKME-GKGCMPNAITFKTIICALLEKDEND 428

Query: 280 EAEAMFNEMLEAGF 293
           +AE    EM+  G 
Sbjct: 429 KAEKFLREMIARGL 442



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 3/189 (1%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           +  M  +   P    +NN+L ++ + KR   V +++K+   NG++P+  T + L+  +  
Sbjct: 49  FNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCH 108

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
             +     SV+  + ++G   +    NTL+      G    A   F D   ++  Q D  
Sbjct: 109 LTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALH-FHDKVVAQGFQLDQV 167

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
           ++ ++I    C+   ++A A     LE    +P+L + T++I C  K +   D     + 
Sbjct: 168 SYGTLIN-GLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSE 226

Query: 323 LPELGITPD 331
           +   GI+P+
Sbjct: 227 MIVKGISPN 235



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/155 (18%), Positives = 71/155 (45%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  L++  +++    +   +++LI       + +  + + ++MK  G++PN+ 
Sbjct: 283 KEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVY 342

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  LLD + +  R    K  ++ +   G   N  TY  ++    +A    D + +  +M
Sbjct: 343 SYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKM 402

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           + KG   +   + T++    +    D+A +   +M
Sbjct: 403 EGKGCMPNAITFKTIICALLEKDENDKAEKFLREM 437


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           +++ L+++   +G  D     Y +M   G  PN  TY  LL ++ +A+R  + +++++ M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G SPN  +Y+ L+    R +  ++   +  EM + G Q +V  Y +LL+    +G  
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EA ++F  M     C PD   ++ +I   S +G + EA  +F EMLE G  P +F   S
Sbjct: 139 KEAVDLFSRM-VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
           L+  + +      V      +   G  P+        D FC
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 118/232 (50%), Gaps = 5/232 (2%)

Query: 121 PNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN F+   L+  +   G+      ++ EM+++G  P++++YN L+  M    +P + + +
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRL 284

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM  +G+ P+  +Y  L+  Y ++   +  + ++ E+ + G++     Y+T++     
Sbjct: 285 LREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCR 344

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNL 297
            G    AF +F+DM ++ +  PD+     ++ I  CRG +++E+  +F  M++    P +
Sbjct: 345 AGKVGAAFVVFKDMIANGS-APDAAVVIPLV-IGLCRGERLTESCELFQAMVKFECVPLI 402

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
                L+    KA+R+DDV    + L E G +PD      +L  + ++  +E
Sbjct: 403 PEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKE 454



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 107/235 (45%), Gaps = 3/235 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  L+ R        D   ++ LI  +   G+      ++EEM   G  P + 
Sbjct: 134 KMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVF 193

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+LL    R     +V++++K+M   G  PN  T+ +LL  + +     +   ++ EM
Sbjct: 194 TYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEM 253

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +  G    V  YNTL+  MC+  G   EA  +  +M  S    PD  +++ +I   S  G
Sbjct: 254 RSLGCPPDVVSYNTLMRGMCSK-GKPHEAQRLLREMIRS-GVGPDIVSYNILIDGYSKSG 311

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +  A  +F E+ ++G EP+ F  +++I C  +A +          +   G  PD
Sbjct: 312 ALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPD 366



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 1/174 (0%)

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++YN LL+ + ++ R   V   Y +M   G  PN  TY  LLR+  +A+  E+  SV+R 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  +G   +V  Y+ L+A        DEA E+  +M    + QP+  T+ S+++     G
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGH-QPNVVTYGSLLSGLCKMG 136

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           K+ EA  +F+ M+  G  P+  V   LI  + K     +  R    + E G  P
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP 190



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 38/248 (15%)

Query: 121 PNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRP--- 172
           PN FS  I + G       D    +  EM   G +PN++TY +LL     MG+ K     
Sbjct: 85  PNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDL 144

Query: 173 -----------------------------WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
                                         +   +++EM + G  P   TY SLL  + R
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSR 204

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
                   S++++M  +G   ++  +N LL     +G   EA  +F +M+S   C PD  
Sbjct: 205 KGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL-GCPPDVV 263

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           ++++++     +GK  EA+ +  EM+ +G  P++     LI  Y K+   D  ++    +
Sbjct: 264 SYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEI 323

Query: 324 PELGITPD 331
           P+ G+ PD
Sbjct: 324 PKSGLEPD 331


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 4/241 (1%)

Query: 116 KWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K RI+P+ F+   LI  +   GN D    +Y++M    + PN +TYN+L++ +    R +
Sbjct: 234 KRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLY 293

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             K  +  M   G  PN  TY +L+  + ++R  ED + +++ M  +G+      YNTL+
Sbjct: 294 HAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLI 353

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                VG    A +IF  M S     PD  T   ++      G++  A   FN+M     
Sbjct: 354 HGYCQVGKLRVAKDIFSWMVSC-GVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEK 412

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPKEELGK 352
              +     +I    KA + ++      RLP  G+ PD R +   +L +    P+ E  +
Sbjct: 413 YLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADE 472

Query: 353 L 353
           L
Sbjct: 473 L 473



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 139/299 (46%), Gaps = 8/299 (2%)

Query: 119  IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
            ++PN   ++T+I       + +  L ++  M+  G+  + +TYN L+  +  + R     
Sbjct: 716  LEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAA 775

Query: 177  TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             + ++M    + PN   + +L+  + +     +  ++Y+EM  + +  ++  YN+L+   
Sbjct: 776  RLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGF 835

Query: 237  ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
               G   +A  +F D+  S+ C PD  T++++IT      +V +   +F EM   G   +
Sbjct: 836  CIQGRLGDAKHMF-DLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGD 894

Query: 297  LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
             F   +LI  Y +A + +   +  NR+ + G+ PD      LL+ +    K E+   +VE
Sbjct: 895  AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVE 954

Query: 356  CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK----AYCNCLIDLCVN 410
             ++K+   +  +   ++ +     D  KEA  LF S+++   K    AY   +  LC N
Sbjct: 955  DLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRN 1013



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 1/229 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++   L+ +  N     D  +F+ LI  +     F   L +  +M  +G +P+++T  +L
Sbjct: 632 DIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSL 691

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L+   +  R  +  ++   M + GL PN   Y +++    + R   + L ++  M++KG+
Sbjct: 692 LNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGI 751

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
                 YNTL++   + G   +A  +  DM       P+   F+++I      G + EA+
Sbjct: 752 VADAVTYNTLISGLCNSGRWTDAARLLRDM-VKRKIDPNVIFFTALIDTFVKEGNLLEAK 810

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++ EM+     PN+    SLI  +    R  D     + +   G  PD
Sbjct: 811 NLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPD 859



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 3/192 (1%)

Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K +IDPN   F+ LI  +   GN     N+Y+EM    V PN++TYN+L++      R  
Sbjct: 783 KRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLG 842

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             K ++  M   G  P+  TY +L+  + +++  ED + ++ EM  +G+      YNTL+
Sbjct: 843 DAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLI 902

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G  + A ++F  M       PD  T++ ++      GK+ +A  M  ++ +   
Sbjct: 903 HGYCQAGKLNVAQKVFNRMVDC-GVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQM 961

Query: 294 EPNLFVLTSLIQ 305
           + ++     +IQ
Sbjct: 962 DVDIITYNIIIQ 973



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 2/233 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +F+ LI  +         L++  +M  +G  P+++T+ +LL       R     ++ 
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCAD 238
             M  +G  PN   Y +L+    +       L +  EM++KG +   +  YNTLL     
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCY 218

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   +A  I  DM +     PD +TF+++I     +G + EA+ ++ +ML++   PN  
Sbjct: 219 SGEWRQAARILRDM-TKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTV 277

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
              SLI       R     +  + +   G  P+      L+N   ++ + E G
Sbjct: 278 TYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDG 330



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 126/286 (44%), Gaps = 10/286 (3%)

Query: 31  DSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKL 90
           D   +YS T+L    V L    SS+  K          + G++P+S  + +  S      
Sbjct: 520 DLYYYYSDTTLWSSLVGLIPIASSSSVKGFVRRHLLLLERGNNPESRSF-SGASHHHHHH 578

Query: 91  KEKSYDTRAGN------VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 144
               Y  R  +       + AFGL+      +       F+ ++        FD  + ++
Sbjct: 579 HHHHYRERLRSELHCIKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLF 638

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
            +M+ +G+  ++ ++  L+    R  R      +  +M   G  P+  T  SLL  + + 
Sbjct: 639 HKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQG 698

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
              ++ +S+   M E G++ +V +YNT++  +C +    + A EIF  M+  +    D+ 
Sbjct: 699 NRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRD-LNNALEIFYGME-KKGIVADAV 756

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           T++++I+     G+ ++A  +  +M++   +PN+   T+LI  + K
Sbjct: 757 TYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVK 802



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 12/219 (5%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMGRAKRPWQVK 176
           +PN   ++TLI      G+ +  L +  EM+  G +  +++TYN LL  +  +    Q  
Sbjct: 167 EPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAA 226

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            I ++MT   ++P+  T+ +L+ A+ +    ++   +Y++M +  +  +   YN+L+   
Sbjct: 227 RILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGL 286

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEP 295
              G    A + F D+ +S+ C P+  T++++I   C  R +V +   +F  M   G   
Sbjct: 287 CMHGRLYHAKKTF-DLMASKGCFPNVVTYNTLINGFCKSR-RVEDGMKLFQRMYREGLVG 344

Query: 296 NLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPD 331
           + F   +LI  Y   GK +   D+    + +   G+TPD
Sbjct: 345 DTFTYNTLIHGYCQVGKLRVAKDI---FSWMVSCGVTPD 380



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 91/208 (43%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ L+        ++  +   ++M+  G+  ++ ++  L+    R  R     +I  +M 
Sbjct: 68  FTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMM 127

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G  P+  T+ SLL  +       D  S+   M + G + +V +YNTL+      G  +
Sbjct: 128 KLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVN 187

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A E+  +M+       D  T+++++T     G+  +A  +  +M +    P++F  T+L
Sbjct: 188 IALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTAL 247

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I  + K    D+      ++ +  I P+
Sbjct: 248 IDAFVKQGNLDEAQELYKQMLQSSIGPN 275



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 93/234 (39%), Gaps = 40/234 (17%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            + GN++ A  LY +       I PN   +++LI      G        ++ M + G  P
Sbjct: 252 VKQGNLDEAQELYKQMLQSS--IGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFP 309

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTL 211
           N++TYN L++   +++R      +++ M   GL  +  TY +L+  Y   G+ R  +D  
Sbjct: 310 NVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIF 369

Query: 212 S--------------------------------VYREMKEKGMQLSVTLYNTLLAMCADV 239
           S                                 + +M+     L +  YN ++      
Sbjct: 370 SWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKA 429

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
              +EA+E+F  +   E  +PD+ T++ MI      G   EA+ +F  M E G 
Sbjct: 430 DKVEEAWELFCRL-PVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 72/156 (46%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            ++  VE    L+    ++    D   ++TLI  Y  AG  +    V+  M   GV P+++
Sbjct: 872  KSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIV 931

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            TYN LLD +    +  +   + +++  N +  +  TY  +++   R    ++   ++R +
Sbjct: 932  TYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSL 991

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
              KG++L    Y T+++     G   EA ++   MK
Sbjct: 992  TRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMK 1027



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 10/157 (6%)

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D+AF +F +M  S    P    F+ ++T  +   K      +F++M   G   +L+  T 
Sbjct: 597 DDAFGLFCEMLQSRPI-PSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTI 655

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361
           LI C+ +  R    +  L ++ +LG  P     G LLN   Q  + +E   LV+    S 
Sbjct: 656 LIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVD----SM 711

Query: 362 SKLGYVVKLLLEEQDIEGDFKKE----ATELFNSISK 394
           ++LG    +++    I G  K      A E+F  + K
Sbjct: 712 AELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEK 748


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 116/249 (46%), Gaps = 3/249 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPN 155
           R GN+ MA+ L ++  NE    +    +T++     AG     L  + E + +    K N
Sbjct: 258 RVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGN 317

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TY+ L+  +           ++ E    G SP+   Y +++    +A   ED  S+  
Sbjct: 318 AVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            MKE G +L    YN L+A         EA+E+ ++MK     +PD  T++++++     
Sbjct: 378 SMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEV-GIRPDVCTYNTLLSGSCKA 436

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G  +  + +  +M++ G +P++    +L+  Y K  + D+ +R L  + E GI P++   
Sbjct: 437 GDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIY 496

Query: 336 GCLLNVMTQ 344
             L++ + +
Sbjct: 497 NTLIDFLCK 505



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 109/226 (48%), Gaps = 1/226 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+AG +E A  +    +   +++D  A++ LI  +           + +EMK +G++P++
Sbjct: 364 TQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDV 423

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN LL    +A     V  +  +M D+G  P+  T+ +L+  Y +    ++ L + R 
Sbjct: 424 CTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRS 483

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G+  +  +YNTL+      G  D A E+F++MK  ++   +  TF++++     + 
Sbjct: 484 MDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMK-EKSVPANVTTFNALLKGLRDKN 542

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
              +A  + ++M E    P+   +  L++       TD + R + +
Sbjct: 543 MPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQ 588



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 40/254 (15%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--KAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R D   +  L+     AG     L V + M  + + ++P+++T N ++D + ++ R  + 
Sbjct: 169 RPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEA 228

Query: 176 KTIYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
               ++     +G  PN  TY  L+ A+ R         +  +M+ +G+  ++   NT++
Sbjct: 229 LAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIV 288

Query: 234 AMCADVGYTDEAFEIFEDMKS------------------------------------SEN 257
                 G T  A E F + ++                                    SE 
Sbjct: 289 GGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEG 348

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             PD+  + +MI+  +  G++ +A +M + M EAGF+ +      LI  + + +R  +  
Sbjct: 349 HSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAY 408

Query: 318 RALNRLPELGITPD 331
             L  + E+GI PD
Sbjct: 409 ELLQEMKEVGIRPD 422


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 14/295 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +  ++E+A  + D  ++      P +F+ LI  +    NF+    V EE K  G +P++
Sbjct: 292 VKGQSIEIAHNVLDEFKSSVPLSSP-SFNILINGWCKVRNFEKARKVMEERKEHGFEPDV 350

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYNN +++    K   +V  + +EM  NG  PN  TY  LL  YG+A      L  Y  
Sbjct: 351 FTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYER 410

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK+ G+      Y++L+ +    G   +A E+F+DM   +    D  T+++MI+      
Sbjct: 411 MKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDM-PKQGVVRDVVTYNTMISTACAHS 469

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K   A  +  EM E   +P+L     L++   K +R   +   L+ + +  + PD     
Sbjct: 470 KEETALRLLKEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYT 529

Query: 337 CLLNVMTQTPKEELGKLVEC-------VEKSNSKLGYVVKLLLEEQDIEGDFKKE 384
            L+  ++ +     GKLVE        V K  + +   VKLL  + +I+   K++
Sbjct: 530 LLVQSLSNS-----GKLVEACTFFEEMVSKGFTPMETTVKLLTRKLEIKSMLKEK 579



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 3/239 (1%)

Query: 105 AFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           A+G +  A+ +   +  P  ++ ++ + G A  FD    + +EMK I     + T + ++
Sbjct: 194 AYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMKRIEGYVCLDTMSKVM 253

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
               +A+R       ++ M   G+  +      LL A  + +  E   +V  E K   + 
Sbjct: 254 RRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIEIAHNVLDEFKS-SVP 312

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           LS   +N L+     V   ++A ++ E+ K     +PD +T+++ I          + + 
Sbjct: 313 LSSPSFNILINGWCKVRNFEKARKVMEERK-EHGFEPDVFTYNNFIESYCHDKDFRKVDE 371

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
           +  EM   G  PN    T L+  YGKA +    +    R+ + GI PD  F   L+ ++
Sbjct: 372 VLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYIL 430



 Score = 38.9 bits (89), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 3/155 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A  ++D    +    D   ++T+I         +  L + +EM+    KP++ 
Sbjct: 432 KAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEMEETSCKPDLQ 491

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ LL    + KR   +K +   M  + L P+  TY  L+++   +    +  + + EM
Sbjct: 492 TYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNSGKLVEACTFFEEM 551

Query: 218 KEKG---MQLSVTLYNTLLAMCADVGYTDEAFEIF 249
             KG   M+ +V L    L + + +   D+  E+ 
Sbjct: 552 VSKGFTPMETTVKLLTRKLEIKSMLKEKDQIEELM 586


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 142/282 (50%), Gaps = 7/282 (2%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
            Y  + G++  A  L+ + +      D   +++LI  YG  G  D    ++EEMK +G +
Sbjct: 260 GYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCE 319

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P++ITYN L++   + ++  +      EM ++GL PN  TY++L+ A  +    +  +  
Sbjct: 320 PDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKF 379

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             +M+  G+  +   Y +L+      GY  +A ++ ++M   +    +  T+++++    
Sbjct: 380 LLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQ-VGFNVVTYTTLLDGLC 438

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G++ EAE +F  M++AG  PNL   T+L+  + K +R ++ +  L  + E  I PD  
Sbjct: 439 KEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLL 498

Query: 334 FCGCLL-NVMTQTPKEE----LGKLVECVEKSNSKLGYVVKL 370
             G ++  + +Q   EE    + ++  C  ++NS + Y +++
Sbjct: 499 LYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVI-YTIRM 539



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 3/219 (1%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN--VYEEMKAIGVKPNMITYNNLLDTMGRA 169
           +R  ++R+ P A S    LY  A    G L+   + +M   G+  ++ TYN ++  M + 
Sbjct: 206 SRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKE 265

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
                 K+++ +M   GL+P+  TY SL+  YG+    +++  ++ EMK+ G +  V  Y
Sbjct: 266 GDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITY 325

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           N L+          +AF    +MK+S   +P+  T+S++I        + +A     +M 
Sbjct: 326 NALINCFCKYEQMPKAFHFLHEMKNS-GLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMR 384

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             G  PN F  TSLI    KA    D ++  + + ++ +
Sbjct: 385 RVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQV 423



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 15/257 (5%)

Query: 130 LYGTA-------GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           LYGT           + C  V  EMKA G++ N + Y   +D   +  +  +   + +EM
Sbjct: 499 LYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEM 558

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-VTLYNTLLAMCADVGY 241
            D G+     T+  L+    +    E+ +  +  M +  +Q + V +   L+       Y
Sbjct: 559 CDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNY 618

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            + A ++F++M+  +N  PD   ++++I          EA  + + M E G E +L   T
Sbjct: 619 IEAAKKLFDEMQD-KNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYT 677

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           SL+    +          LN +   GI PD+  C  LL         ELG + E +E  +
Sbjct: 678 SLVWGLSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLR-----KYYELGSIDEAIELHD 732

Query: 362 SKLGYV-VKLLLEEQDI 377
             L  V +  LLEEQ++
Sbjct: 733 ELLKKVPLDELLEEQNL 749



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 1/153 (0%)

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  MT   + P   +  + L    +   G+ +   +R+M   G+  SV  YN ++     
Sbjct: 205 FSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCK 264

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    A  +F  MK      PD  T++S+I      G + E+  +F EM + G EP++ 
Sbjct: 265 EGDMVTAKSLFHQMKQM-GLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVI 323

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +LI C+ K ++       L+ +   G+ P+
Sbjct: 324 TYNALINCFCKYEQMPKAFHFLHEMKNSGLKPN 356



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 107/272 (39%), Gaps = 37/272 (13%)

Query: 96  DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + +AG +  A  L D     +   +   ++TL+      G      +++  M   GV PN
Sbjct: 402 NCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPN 461

Query: 156 MITYNNLLDTMGRAKRP--------------------------W---------QVKTIYK 180
           + TY  L+    + KR                           W         + + +  
Sbjct: 462 LKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMS 521

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM   G+  N   Y   + AY +     + L++ +EM + G+++++  +  L+      G
Sbjct: 522 EMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKG 581

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFV 299
             +EA + F  M +  N QP++    + +    C+   +  A+ +F+EM +    P+   
Sbjct: 582 LVEEAIDYFARM-ADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIA 640

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            T+LI    K +   + +   +R+ ELG+  D
Sbjct: 641 YTALIDGNLKHKDFQEALNIRSRMSELGMELD 672



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY-GTAGN--FDGCLNVYEEMKAIGVKP 154
           + G VE A   +  AR   + + PN  +    L  G   N   +    +++EM+   + P
Sbjct: 579 KKGLVEEAIDYF--ARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVP 636

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + I Y  L+D   + K   +   I   M++ G+  + + Y SL+    +    +      
Sbjct: 637 DKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFL 696

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            EM  KG+     L   LL    ++G  DEA E+ +++
Sbjct: 697 NEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDEL 734


>gi|359487106|ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 571

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 114/236 (48%), Gaps = 4/236 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +++ +   G +  C   +EEM   GV  ++ +Y+  +D   ++ +PW+   +Y
Sbjct: 317 DVKIYNIILRGWFKMGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLY 376

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KEM   G+  +   Y +++RA G +   + ++ V+REMKE G + +V  YNT++ +  + 
Sbjct: 377 KEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCEN 436

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA+ +F+ M+  +   P+  T+        C  K  +    F+ M+ +G  P +  
Sbjct: 437 GRIREAYGVFDQMR-EKGYAPNVITYHCFF---GCIEKPKQILRTFDRMINSGVRPRMDT 492

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 355
              L++ +G+      V     ++ E G +PD      L++ + Q    +L +  E
Sbjct: 493 YVMLMKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYE 548



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 4/196 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G    A  LY   + +  R+D  A++T+I+  G +   D  + V+ EMK +G +PN++
Sbjct: 365 KSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVV 424

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++  +    R  +   ++ +M + G +PN  TY      +G     +  L  +  M
Sbjct: 425 TYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYHCF---FGCIEKPKQILRTFDRM 481

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++  +  Y  L+      G+    F +++ M+  + C PD+  ++++I     +G 
Sbjct: 482 INSGVRPRMDTYVMLMKKFGRWGFLRPVFIVWKKME-EQGCSPDACAYNALIDALVQKGM 540

Query: 278 VSEAEAMFNEMLEAGF 293
           V  A     EML  G 
Sbjct: 541 VDLARKYEEEMLAKGL 556



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 92/212 (43%), Gaps = 4/212 (1%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PNMITYNNLLDTMGRAKRPWQVKTIYK 180
           + ++ +I + G    FD    + + MKA  V  PN +T+  +      A    +    Y 
Sbjct: 213 DTYNGMIDILGKFFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRYAAAHLVEEAMNAYY 272

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY-REMKEKGMQLSVTLYNTLLAMCADV 239
              +  L     +Y++L+ A    ++  +   ++ +E K+      V +YN +L     +
Sbjct: 273 RTEEFNLRDE-TSYSNLIDALCEYKHVIEAEELFLKESKDLVFNDDVKIYNIILRGWFKM 331

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G+  +  E +E+M     C+   +++S  + I    GK   A  ++ EM + G   ++  
Sbjct: 332 GWWKKCREFWEEMDRRGVCK-SLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVA 390

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             ++I+  G ++  D  +R    + E+G  P+
Sbjct: 391 YNTVIRAIGLSEGVDFSIRVFREMKEVGCEPN 422


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 107/220 (48%), Gaps = 3/220 (1%)

Query: 114 NEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           N K + +P+   +++L+  +  AG+     +V+ EMK  G+ PN+ TY+ ++D + R+ +
Sbjct: 243 NLKHKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQ 302

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
             +   ++ EM D G +PN  T+ +L+R + RA   E  L VY +MK       +  YN 
Sbjct: 303 ITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNF 362

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           L+          EA ++   M +  +C P++ +F+ +    +    V+ A  MF  M E 
Sbjct: 363 LIETHCKDDNLGEAIKVLNSM-AKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEV 421

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G +PN      L++ +   +  D + +    + E  + P+
Sbjct: 422 GCKPNTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPN 461



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 123/273 (45%), Gaps = 12/273 (4%)

Query: 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           E +   P  ++ +I L G    F     + + MKA  V+  ++T++ L+    RA    +
Sbjct: 142 EGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAE 201

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
               +  M D G + +   +++++    + R   +  S +  +K K  +  V +Y +L+ 
Sbjct: 202 AVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHK-FEPDVIVYTSLVH 260

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                G   EA  +F +MK +    P+ +T+S +I      G+++ A  +F EML+AG  
Sbjct: 261 GWCRAGDISEAESVFREMKMA-GISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCN 319

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           PN     +LI+ + +A RT+ V++  N++  L    D      L+   T    + LG+ +
Sbjct: 320 PNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIE--THCKDDNLGEAI 377

Query: 355 ECVEK--------SNSKLGYVVKLLLEEQDIEG 379
           + +          + S    + + + + QD+ G
Sbjct: 378 KVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNG 410



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 107/233 (45%), Gaps = 2/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G +  A  ++    +     +   F+ LI+++  AG  +  L VY +MK +    ++I
Sbjct: 299 RSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLI 358

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L++T  +     +   +   M  N  +PN +++  + R   +++       ++  M
Sbjct: 359 TYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARM 418

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE G + +   YN L+ M A     D  F++ ++M   E  +P+  T+  +I +    G 
Sbjct: 419 KEVGCKPNTVTYNILMRMFAVPKSADMIFKLKKEM-DEEEVEPNFNTYRELIALYCGMGH 477

Query: 278 VSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            + A   F EM+ E   +P++ +   +++   KA +       ++++ E G  
Sbjct: 478 WNHAYMFFREMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDKMVERGFA 530



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 108/241 (44%), Gaps = 9/241 (3%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN ++D  G+ K+      +   M    +     T++ L+R Y RA    + +  +  M+
Sbjct: 151 YNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVHAFNRME 210

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G    +  ++ ++++        EA   F+++K     +PD   ++S++      G +
Sbjct: 211 DYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLK--HKFEPDVIVYTSLVHGWCRAGDI 268

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDDRFC 335
           SEAE++F EM  AG  PN++  + +I      G+  R  DV      + + G  P+    
Sbjct: 269 SEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDV---FAEMLDAGCNPNSVTF 325

Query: 336 GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
             L+ V  +  + E++ ++   +++       +    L E   + D   EA ++ NS++K
Sbjct: 326 NNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSMAK 385

Query: 395 D 395
           +
Sbjct: 386 N 386


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 3/209 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y   G  +G  + + +MK+  +KP+ ITYN L++ + +A+R    + +  EM 
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
           DNG++P   T+ +L+ AYGR    E    V  EM+E G++ +V  Y +++ A C + G  
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN-GKI 311

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EA  I +DM   ++  P++  ++++I      G   +A  +  +M   G  P++     
Sbjct: 312 PEAVAILDDM-FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 370

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           LI+      +  +    +N L    + PD
Sbjct: 371 LIKGLCNQSQISEAEEIINSLSNHRLIPD 399



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+TLI  YG  G  + C  V  EM+  G+KPN+++Y ++++   +  +  +   I  +M 
Sbjct: 263 FNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMF 322

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
              + PN   Y +++ AY      +    +  +MK  G+  S+  YN L+    +     
Sbjct: 323 HKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQIS 382

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA EI   + S+    PD+ +++++I+ C  RG + +A  +   M + G +  +     L
Sbjct: 383 EAEEIINSL-SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 441

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           I   G A R +++     ++ +  + P +     + N+M + 
Sbjct: 442 ISGLGGAGRLNEMEYLYQKMMQNNVVPSN----AIHNIMVEA 479



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E AF  + + ++   + D   ++ LI     A       ++  EM+  GV P + 
Sbjct: 202 QTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 261

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+D  GR  +  +   +  EM +NGL PN  +Y S++ A+ +     + +++  +M
Sbjct: 262 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM 321

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             K +  +  +YN ++    + G  D+AF + E MKS+    P   T++ +I     + +
Sbjct: 322 FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN-GISPSIVTYNLLIKGLCNQSQ 380

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +SEAE + N +      P+     +LI         D  +    R+ + GI
Sbjct: 381 ISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGI 431



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 117/285 (41%), Gaps = 36/285 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A  ++D         +   ++T+I  +   G+ +    + ++M   G+KPN I
Sbjct: 27  RAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAI 86

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL  + RA R  +   +  EM    + P+  TY+ L     R    +  LS++ + 
Sbjct: 87  TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 146

Query: 218 KEKGMQL-----------------------------------SVTLYNTLLAMCADVGYT 242
            + G+ +                                   +  +YNTL+      G  
Sbjct: 147 LKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 206

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           + AF  F  MK S + +PD  T++++I       +++ A+ +  EM + G  P +    +
Sbjct: 207 EGAFSTFGQMK-SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNT 265

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           LI  YG+  + +     L+ + E G+ P+    G ++N   +  K
Sbjct: 266 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 310



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 3/229 (1%)

Query: 121 PNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNAFS  + + G   AG     + V++EM    V PN ITYN ++D   +         +
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             +M  +GL PN  TY  LL    RA    +T ++  EM  + M      Y+ L    + 
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G +     +F     +     D +T S ++      GKVS AE +   ++ AG  P   
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRV 191

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           +  +LI  Y +    +       ++    I PD      L+N + +  +
Sbjct: 192 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 240



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N +   D  +++TLI      GN D  L++ + M   G+K  + TY+ L+  +G A R  
Sbjct: 393 NHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLN 452

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEK 220
           +++ +Y++M  N + P+   +  ++ AY  ++YG +  +  + +EM +K
Sbjct: 453 EMEYLYQKMMQNNVVPSNAIHNIMVEAY--SKYGNEIKAEDLRKEMLQK 499


>gi|18422700|ref|NP_568665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635755|sp|Q56XR6.2|PP421_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46680
 gi|332008030|gb|AED95413.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 468

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLIK Y      D    V   M+  G++P++ TYN+L+    +     +V  ++
Sbjct: 47  DVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLF 106

Query: 180 KEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            EM  +GLSP+  +Y +L+  Y +  R+GE    ++ ++   G+   +  YN LL     
Sbjct: 107 DEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCK 166

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            G+TD A E+F+ +KS    +P+  T++ +I  +C  R +V   + M  E+ ++G+ PN 
Sbjct: 167 SGHTDNAIELFKHLKS--RVKPELMTYNILINGLCKSR-RVGSVDWMMRELKKSGYTPNA 223

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC-LLNVMTQTPKEE 349
              T++++ Y K +R +  ++   ++ + G T D  F  C +++ + +T + E
Sbjct: 224 VTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDG-FANCAVVSALIKTGRAE 275



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L+     +G+ D  + +++ +K+  VKP ++TYN L++ + +++R   V  + +E
Sbjct: 155 DTYNILLDALCKSGHTDNAIELFKHLKS-RVKPELMTYNILINGLCKSRRVGSVDWMMRE 213

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +  +G +PN  TY ++L+ Y + +  E  L ++ +MK++G          +++     G 
Sbjct: 214 LKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGR 273

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            +EA+E   ++  S     D  ++++++ +    G +   + +  E+   G +P+ +  T
Sbjct: 274 AEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHT 333

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            ++        T    + L  + E+G+ P    C CL++
Sbjct: 334 IIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLID 372


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 123/251 (49%), Gaps = 8/251 (3%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++T+I      G      N++ EM   GV P+++TY +++D + +A+   + + +
Sbjct: 225 PNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELV 284

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            ++M  NG  PN  TY  ++  Y  +   ++T  ++REM  +G+  ++   N+ ++    
Sbjct: 285 LRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCK 344

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G + EA E F+ M +++  +P+  T+S ++   +  G   +   +FN M   G   +  
Sbjct: 345 HGKSKEAAEFFDSM-AAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQR 403

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
           V   +I  YGK    D+ +    ++ E G+ PD    G ++   ++     +G+L + ++
Sbjct: 404 VFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSR-----MGRLADAMD 458

Query: 359 KSNSKLGYVVK 369
           K N  +   +K
Sbjct: 459 KFNQMIAMGLK 469



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 2/213 (0%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   +S L+  Y T G F   LN++  M+  G+  +   +N ++D  G+     +   I
Sbjct: 365 PNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLI 424

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M + G+ P+  TY  ++ A+ R     D +  + +M   G++    +Y++L+     
Sbjct: 425 FTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCM 484

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   +A E+  +M S    +P+   F+S+I      G+V EA  +F+ ++  G  P++ 
Sbjct: 485 HGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVI 544

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              SLI  YG   + +     L+ +   GI PD
Sbjct: 545 TFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPD 577



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 3/248 (1%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
            Y T    V+M   L++         D   F+ +I  YG  G  D  + ++ +M+  GV 
Sbjct: 376 GYATEGCFVDM-LNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVI 434

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+  TY  ++    R  R       + +M   GL P    Y SL++ +           +
Sbjct: 435 PDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKEL 494

Query: 214 YREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
             EM  +G+ + ++  +N+++      G   EA +IF D       +PD  TF+S+I   
Sbjct: 495 VSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIF-DFVIHIGERPDVITFNSLIDGY 553

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              GK+ +A  + + M+ AG EP++    +LI  Y +  R DD +     +   G+ P  
Sbjct: 554 GLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTT 613

Query: 333 RFCGCLLN 340
              G +L+
Sbjct: 614 ITYGIILH 621



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 105/207 (50%), Gaps = 1/207 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +E AFG+ D   +     D  +++TLI  Y   G  D  L ++ EM + GVKP  IT
Sbjct: 556 VGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTIT 615

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  +L  +    R    K +  EM ++G + + +T   +L    R    ++ +++++++ 
Sbjct: 616 YGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLG 675

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              ++ ++ + NT++     V   +EA E+F+ + S+    P++ T+  MI      G V
Sbjct: 676 AMNVKFNIAIINTMIDAMYKVRKREEAKELFDSI-SATGLVPNASTYGVMIKNLLKEGSV 734

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            EA+ MF+ M ++G  P+  +L  +I+
Sbjct: 735 EEADNMFSLMEKSGCAPSSRLLNYIIR 761



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 1/186 (0%)

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
           K+ G  PN++TYN ++  + R     +   ++ EM   G+ P+  TY S++ A  +AR  
Sbjct: 219 KSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAM 278

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           +    V R+M   G Q +   YN ++   +  G   E   +F +M +S+   P+  T +S
Sbjct: 279 DKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREM-TSQGLMPNIVTCNS 337

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            ++     GK  EA   F+ M   G +PNL   + L+  Y       D++   N +   G
Sbjct: 338 YMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNG 397

Query: 328 ITPDDR 333
           I  D R
Sbjct: 398 IVADQR 403



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 124/266 (46%), Gaps = 11/266 (4%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+++I      G      ++++ +  IG +P++IT+N+L+D  G   +  +   +
Sbjct: 506 PNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGV 565

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
              M   G+ P+  +Y +L+  Y R    +D L ++ EM  KG++ +   Y  +L    +
Sbjct: 566 LDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFN 625

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNL 297
            G T  A ++  +M  S      S     +I    CR     EA AMF ++     + N+
Sbjct: 626 DGRTVGAKKMCHEMIESGTTMDIST--CGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNI 683

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVEC 356
            ++ ++I    K ++ ++     + +   G+ P+    G ++ N++ +   EE   +   
Sbjct: 684 AIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSL 743

Query: 357 VEKSNSK-----LGYVVKLLLEEQDI 377
           +EKS        L Y++++LLE+ +I
Sbjct: 744 MEKSGCAPSSRLLNYIIRVLLEKGEI 769



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 93/198 (46%), Gaps = 2/198 (1%)

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           EE +     P + TYN L+D   R +RP     ++      GL  +    + LL+    A
Sbjct: 108 EEARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHA 167

Query: 205 RYGEDTLSVY-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDS 262
           +  +D +++    M E G++     YNT++    +   +  A ++   M K S  C P+ 
Sbjct: 168 KRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNV 227

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T++++I      G+VS+A  +F+EM++ G  P++   TS+I    KA+  D     L +
Sbjct: 228 VTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQ 287

Query: 323 LPELGITPDDRFCGCLLN 340
           +   G  P+     C+++
Sbjct: 288 MISNGFQPNKVTYNCMIH 305



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 7/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V  A  L+     +    D   ++++I     A   D    V  +M + G +PN +
Sbjct: 239 REGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKV 298

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW---NTYASLLRAYGRARYGEDTLSVY 214
           TYN ++     + +  +   +++EMT  GL PN    N+Y S L  +G+++   +    +
Sbjct: 299 TYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSK---EAAEFF 355

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             M  KG + ++  Y+ LL   A  G   +   +F  M+ +     D   F+ +I     
Sbjct: 356 DSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGN-GIVADQRVFNIVIDAYGK 414

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           RG + E   +F +M E G  P+      +I  + +  R  D +   N++  +G+ P+
Sbjct: 415 RGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPE 471


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 116/249 (46%), Gaps = 3/249 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPN 155
           R GN+ MA+ L ++  NE    +    +T++     AG     L  + E + +    K N
Sbjct: 258 RVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGN 317

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TY+ L+  +           ++ E    G SP+   Y +++    +A   ED  S+  
Sbjct: 318 AVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            MKE G +L    YN L+A         EA+E+ ++MK     +PD  T++++++     
Sbjct: 378 SMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEV-GIRPDVCTYNTLLSGSCKA 436

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G  +  + +  +M++ G +P++    +L+  Y K  + D+ +R L  + E GI P++   
Sbjct: 437 GDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIY 496

Query: 336 GCLLNVMTQ 344
             L++ + +
Sbjct: 497 NTLIDFLCK 505



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+AG +E A  +    +   +++D  A++ LI  +           + +EMK +G++P++
Sbjct: 364 TQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDV 423

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN LL    +A     V  +  +M D+G  P+  T+ +L+  Y +    ++ L + R 
Sbjct: 424 CTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRS 483

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G+  +  +YNTL+      G  D A E+F++MK  ++   +  TF++++     + 
Sbjct: 484 MDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMK-EKSVPANVTTFNALLKGLRDKN 542

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
              +A  + ++M E    P+   +  L++
Sbjct: 543 MPEKAFELMDQMREERCFPDYVTVDVLME 571



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 40/254 (15%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--KAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R D   +  L+     AG     L V + M  + + ++P+++T N ++D + ++ R  + 
Sbjct: 169 RPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEA 228

Query: 176 KTIYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
               ++     +G  PN  TY  L+ A+ R         +  +M+ +G+  ++   NT++
Sbjct: 229 LAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIV 288

Query: 234 AMCADVGYTDEAFEIFEDMKS------------------------------------SEN 257
                 G T  A E F + ++                                    SE 
Sbjct: 289 GGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEG 348

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             PD+  + +MI+  +  G++ +A +M + M EAGF+ +      LI  + + +R  +  
Sbjct: 349 HSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAY 408

Query: 318 RALNRLPELGITPD 331
             L  + E+GI PD
Sbjct: 409 ELLQEMKEVGIRPD 422


>gi|255661208|gb|ACU25773.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN ++   G+     +  
Sbjct: 180 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKAN 239

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM + G+ PN  TY++++  +G+    +    ++++++  G+++   LY T++   
Sbjct: 240 NLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAY 299

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG   +
Sbjct: 300 ERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKD 354

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           + V   +I  + K ++  +VV    ++  LG   D      +LN
Sbjct: 355 ITVFERMIDLFSKYKKYPNVVEVFEKMRGLGYFSDSNVISLVLN 398



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 123/267 (46%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G+KP+++ Y
Sbjct: 23  GLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRAGIKPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N++++  G+AK   + +++  EM + G+ P+  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  ++ + +  T+++M+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPNAITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVEID 288



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +   G+ P+   Y S++  +G+A+   +  S+  EM+E G+      Y+TLL M  + 
Sbjct: 68  SRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +        EA+ +F  M + G EPN+  
Sbjct: 128 QKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +D LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K +   +PD   ++SMI +        EA ++ +EM EAG  P+    ++L
Sbjct: 62  KAISIFSRLKRA-GIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + Q+  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 11/232 (4%)

Query: 98  RAGNVEMAFGLYDR-----ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           RAG ++ A+  + +     A++E  + D  +++T+I   G AG  D    +++EM   G 
Sbjct: 244 RAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGC 303

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            P++ TYN L+  + +        T++ +M      PN  TY  L+R        +  + 
Sbjct: 304 TPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMK 363

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +   MK +G +  V  YN L+    + G  ++A  +FE M   E+C P+  T++ +I+  
Sbjct: 364 LMERMKGEGCEPVVQTYNVLIRYSFEEGEIEKALCLFERMSKGEDCLPNQDTYNIIISAM 423

Query: 273 SCRGK---VSEAEAMFNEMLEAGFEPNLFVLTSL---IQCYGKAQRTDDVVR 318
             R +   ++ A  M  EM+E G+ P  F+L  +   +   G  Q + D++R
Sbjct: 424 FVRKRAEDMATAARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQISRDLLR 475



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 95/182 (52%), Gaps = 6/182 (3%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+++TYN L D   RAK   +   + ++M ++G++P   TY  +L+ + RA   +   + 
Sbjct: 195 PDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNF 254

Query: 214 YREMKEKGM-----QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           + +MK++G      +  +  Y T++      G  D+A ++F++M S E C P   T++++
Sbjct: 255 FLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEM-SKEGCTPSVATYNAL 313

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I +   +G V +A  +F++M+   + PN+   T LI+      + D  ++ + R+   G 
Sbjct: 314 IQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGC 373

Query: 329 TP 330
            P
Sbjct: 374 EP 375



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N+LLD +G+++   +  ++ + + +    P+  TY +L   + RA+     L + R+M 
Sbjct: 166 FNSLLDALGKSRHASKAASLVRAL-ERRFPPDVVTYNTLADGWCRAKDTSRALDLLRQMA 224

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS----SENCQPDSWTFSSMITICSC 274
           E G+  + T YN +L      G    A+  F  MK      E+C+PD  +++++I     
Sbjct: 225 ESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGV 284

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
            G++ +A  +F+EM + G  P++    +LIQ   K    +D V
Sbjct: 285 AGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAV 327


>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
          Length = 458

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 117/226 (51%), Gaps = 1/226 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I  +   G+ D   + Y EM    + PN++TY++++  + +A+   +   + 
Sbjct: 203 DVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMDKAMEVL 262

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  NG+ P+  TY+S+L  Y  +   ++ +    +M+  G++ +V  Y +L+      
Sbjct: 263 NTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDGVEPNVVTYRSLMNYLCKN 322

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A +IF+ M +    +PD  T+ +++   + +G + E  A+ + M+  G +P+  V
Sbjct: 323 GRCTKARKIFDSM-TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 381

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
              LI  Y K ++ D  +   +++ + G+ P+    G +++V+ ++
Sbjct: 382 FNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 427



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 3/216 (1%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           RI PN   +S++I     A   D  + V   M   GV P+ +TY+++L     + +P + 
Sbjct: 234 RISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKED 293

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
                +M  +G+ PN  TY SL+    +         ++  M ++G++  +  Y TLL  
Sbjct: 294 IGTLNKMRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQG 353

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            A  G   E   +  D+      QPD   F+ +I   + + KV +A  +F++M + G  P
Sbjct: 354 YATKGALVEMHALL-DLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNP 412

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           N+    ++I    K+   DD +    ++ + G+TP+
Sbjct: 413 NVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 448



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 97/214 (45%), Gaps = 1/214 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L++  + +  G  P++++Y  +++   +     +  + Y EM    +SPN  TY+S++ A
Sbjct: 189 LHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAA 248

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
             +A+  +  + V   M + G+      Y+++L      G   E       M+S +  +P
Sbjct: 249 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRS-DGVEP 307

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           +  T+ S++      G+ ++A  +F+ M + G EP++    +L+Q Y       ++   L
Sbjct: 308 NVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALL 367

Query: 321 NRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
           + +   GI PD      L+    +  K +   LV
Sbjct: 368 DLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLV 401



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 5/238 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           RAG +++ F        + +R++   F+ L+K L       D    V   M  +   P++
Sbjct: 107 RAGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDV 166

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRARYGEDTLSV 213
            +   LL  +    R  +   +   M D+   G  P+  +Y +++  + +    +   S 
Sbjct: 167 FSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 226

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y EM  + +  +V  Y++++A        D+A E+   M  +    PD  T+SS++    
Sbjct: 227 YHEMLGRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYSSILHGYC 285

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G+  E     N+M   G EPN+    SL+    K  R     +  + + + G+ PD
Sbjct: 286 SSGQPKEDIGTLNKMRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPD 343



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 106 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
            G  ++ R++   ++PN   + +L+      G       +++ M   G++P++ TY  LL
Sbjct: 294 IGTLNKMRSDG--VEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLL 351

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
                     ++  +   M  NG+ P+ + +  L+ AY +    +  + V+ +M++ G+ 
Sbjct: 352 QGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 411

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            +V  Y T++ +    G  D+A   FE M
Sbjct: 412 PNVVCYGTVIDVLCKSGSVDDAMLYFEQM 440



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           + Y T+   VEM   L D       + D + F+ LI  Y      D  + V+ +M+  G+
Sbjct: 352 QGYATKGALVEM-HALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 410

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
            PN++ Y  ++D + ++         +++M D GL+PN
Sbjct: 411 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 448



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/135 (19%), Positives = 62/135 (45%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           +Y  + G    A  ++D         D   + TL++ Y T G       + + M   G++
Sbjct: 317 NYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQ 376

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+   +N L+    + ++  Q   ++ +M  +GL+PN   Y +++    ++   +D +  
Sbjct: 377 PDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLY 436

Query: 214 YREMKEKGMQLSVTL 228
           + +M ++G+  ++ L
Sbjct: 437 FEQMIDEGLTPNIIL 451


>gi|449525305|ref|XP_004169658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like [Cucumis sativus]
          Length = 600

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 120/256 (46%), Gaps = 6/256 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R    E+A   Y +     ++   +    +I      G +D  L V+++M   G++PN 
Sbjct: 301 VRCNQNELAIDTYVKMVQNSFKPGNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNS 360

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +++N L++ +G+AK      ++Y  M   G SP+  T+ +LL A  +A    D + ++  
Sbjct: 361 VSFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGALYKANRYSDAIHLFEF 420

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K + +QL++ +YNT+L  C+ +G  + A +I  +M+ S      + +++ ++T C    
Sbjct: 421 VKREKVQLNIHIYNTILMSCSKLGLWERAVQILWEMEVS-GLSISTSSYNIVMTACEMAR 479

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K   A  ++  M+     P+ F   SLI+C       D+V   LN+       PD     
Sbjct: 480 KPEIALQVYERMVHQKLTPDTFTHLSLIRCCIWGSLWDEVELLLNK-----SAPDVSVYN 534

Query: 337 CLLNVMTQTPKEELGK 352
            ++  M    K +L K
Sbjct: 535 VVIQGMCLRGKSDLAK 550


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A  +Y+       R +   ++ LI  YG A + +  + +Y ++      P+++
Sbjct: 301 KAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVV 360

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+++L+D   R  +      I+KEM  + + PN  T++ ++ +  +     + L   RE+
Sbjct: 361 TFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLREL 420

Query: 218 KEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             +  +     +YN ++ +    G  +EA  I  DM+  + C PD +T++ +I     +G
Sbjct: 421 NMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEE-KGCHPDKYTYTILIIGHCMKG 479

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           ++ EA  +F++M+E G  P+   + S I C  KA   ++V
Sbjct: 480 RIPEAITLFHKMVETGCRPDKITVNSFISCVLKAGMPNEV 519



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++++I  Y  AG  +  L+VY +M   G +PN +TYN L++  G+A        +
Sbjct: 287 PNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRM 346

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           Y+++      P+  T++SL+  Y R    +D + +++EM +  +Q +V  ++ ++     
Sbjct: 347 YRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCK 406

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
              + EA     ++    +  P ++ ++ +I I    G+V EA  +  +M E G  P+ +
Sbjct: 407 QNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKY 466

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLL 339
             T LI  +    R  + +   +++ E G  PD    + F  C+L
Sbjct: 467 TYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCVL 511



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 107/236 (45%), Gaps = 3/236 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM 156
           R GN + A  L +R        D    + L+     A   +   ++   ++  GV  PN+
Sbjct: 230 RVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNV 289

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY +++    +A R     ++Y +M ++G  PN  TY  L+  YG+A   E  + +YR+
Sbjct: 290 VTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQ 349

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +  +     V  +++L+      G  D+A  I+++M    + QP+ +TFS +I     + 
Sbjct: 350 LILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEM-GQHHIQPNVYTFSIIIHSLCKQN 408

Query: 277 KVSEAEAMFNEM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +EA     E+ + A   P  F+   +I    K  + ++    +  + E G  PD
Sbjct: 409 RSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPD 464



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 10/250 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT-AGNFDGCLNVYEEMKAIGVKPNM 156
           R+G    A  L+D+  ++   +    F + +    T AG  D  + +  +    G +   
Sbjct: 123 RSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTKASQFGRRIEP 182

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYR 215
             YNNLL+ +    R      +++    +GL SP+  ++  +++   R    +  L +  
Sbjct: 183 YAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVE 242

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M E G       +N L+         +   ++   ++    C P+  T++S+I+     
Sbjct: 243 RMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKA 302

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD---- 331
           G++ +A +++N+MLE+G  PN      LI  YGKA   +  VR   +L      PD    
Sbjct: 303 GRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTF 362

Query: 332 ----DRFCGC 337
               D +C C
Sbjct: 363 SSLIDGYCRC 372


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 3/209 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y   G  +G  + + +MK+  +KP+ ITYN L++ + +A+R    + +  EM 
Sbjct: 241 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 300

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
           DNG++P   T+ +L+ AYGR    E    V  EM+E G++ +V  Y +++ A C + G  
Sbjct: 301 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN-GKI 359

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EA  I +DM   ++  P++  ++++I      G   +A  +  +M   G  P++     
Sbjct: 360 PEAVAILDDM-FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 418

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           LI+      +  +    +N L    + PD
Sbjct: 419 LIKGLCNQSQISEAEEIINSLSNHRLIPD 447



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+TLI  YG  G  + C  V  EM+  G+KPN+++Y ++++   +  +  +   I  +M 
Sbjct: 311 FNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMF 370

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
              + PN   Y +++ AY      +    +  +MK  G+  S+  YN L+    +     
Sbjct: 371 HKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQIS 430

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA EI   + S+    PD+ +++++I+ C  RG + +A  +   M + G +  +     L
Sbjct: 431 EAEEIINSL-SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 489

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           I   G A R +++     ++ +  + P +     + N+M + 
Sbjct: 490 ISGLGGAGRLNEMEYLYQKMMQNNVVPSN----AIHNIMVEA 527



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 1/231 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E AF  + + ++   + D   ++ LI     A       ++  EM+  GV P + 
Sbjct: 250 QTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 309

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+D  GR  +  +   +  EM +NGL PN  +Y S++ A+ +     + +++  +M
Sbjct: 310 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM 369

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             K +  +  +YN ++    + G  D+AF + E MKS+    P   T++ +I     + +
Sbjct: 370 FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSN-GISPSIVTYNLLIKGLCNQSQ 428

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           +SEAE + N +      P+     +LI         D  +    R+ + GI
Sbjct: 429 ISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGI 479



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 117/285 (41%), Gaps = 36/285 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A  ++D         +   ++T+I  +   G+ +    + ++M   G+KPN I
Sbjct: 75  RAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAI 134

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL  + RA R  +   +  EM    + P+  TY+ L     R    +  LS++ + 
Sbjct: 135 TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 194

Query: 218 KEKGMQL-----------------------------------SVTLYNTLLAMCADVGYT 242
            + G+ +                                   +  +YNTL+      G  
Sbjct: 195 LKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 254

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           + AF  F  MK S + +PD  T++++I       +++ A+ +  EM + G  P +    +
Sbjct: 255 EGAFSTFGQMK-SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNT 313

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           LI  YG+  + +     L+ + E G+ P+    G ++N   +  K
Sbjct: 314 LIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 358



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 40/286 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NM 156
           R  +V  AFG+   A     R D  A++  ++    AG+    + +   M   G  P N 
Sbjct: 7   RHADVRRAFGILASA---GARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNA 63

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +YN ++  M RA R      ++ EMT+  + PN  TY +++  + +    E    +  +
Sbjct: 64  FSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQ 123

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-------- 268
           M   G++ +   YN LL+     G   E   + ++M +S+   PD +T+S +        
Sbjct: 124 MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM-ASQKMVPDGFTYSILFDGLSRNG 182

Query: 269 ----------------ITI----CS------CR-GKVSEAEAMFNEMLEAGFEPNLFVLT 301
                           +TI    CS      C+ GKVS AE +   ++ AG  P   +  
Sbjct: 183 DSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYN 242

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           +LI  Y +    +       ++    I PD      L+N + +  +
Sbjct: 243 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 288



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N +   D  +++TLI      GN D  L++ + M   G+K  + TY+ L+  +G A R  
Sbjct: 441 NHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLN 500

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEK 220
           +++ +Y++M  N + P+   +  ++ AY  ++YG +  +  + +EM +K
Sbjct: 501 EMEYLYQKMMQNNVVPSNAIHNIMVEAY--SKYGNEIKAEDLRKEMLQK 547


>gi|193848521|gb|ACF22711.1| PPR protein [Brachypodium distachyon]
          Length = 292

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A   ++R R E    D   ++TLI  +   G  D  + ++EEM+     P   TYN +++
Sbjct: 47  AMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMIN 106

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G  +R   V+T+  EM + GL PN  TY +L+  YGR+   ++ +     MK  G++ 
Sbjct: 107 LLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKP 166

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           S T+Y+ L+   A  G  D A  + + M+ ++  +  +   +S++       +V EA ++
Sbjct: 167 SPTMYHALVNAYAQRGLADHALNVVKAMR-ADGLEASTVVLNSLMNAFGEDRRVVEAFSV 225

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              M E    P++   T+L++   + ++ D V      +   G  PD
Sbjct: 226 LQFMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCAPD 272



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 2/178 (1%)

Query: 168 RAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
           R +  WQ    + +EM  +G+ P+ + Y  ++  +G+       +  +  M+E+G++  V
Sbjct: 4   RDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDV 63

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             +NTL+      G  D A E+FE+M+ S NC P + T++ MI +   + +    E M +
Sbjct: 64  VTWNTLIDAHRKGGRHDRAMELFEEMRES-NCPPGTTTYNIMINLLGEQERWVGVETMLS 122

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           EM E G  PN+   T+L+  YG++ R  + +  +  +   G+ P       L+N   Q
Sbjct: 123 EMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQ 180



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 106/232 (45%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+ + AF +         + D + ++ +I  +G        ++ +  M+  G++P+++T+
Sbjct: 7   GDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTW 66

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   +  R  +   +++EM ++   P   TY  ++   G         ++  EMKE
Sbjct: 67  NTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKE 126

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+  ++  Y TL+ +    G   EA E  E MK ++  +P    + +++   + RG   
Sbjct: 127 QGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMK-ADGLKPSPTMYHALVNAYAQRGLAD 185

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            A  +   M   G E +  VL SL+  +G+ +R  +    L  + E  + PD
Sbjct: 186 HALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPD 237



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L++  R          ++ +I L G    + G   +  EMK  G+ PN+I
Sbjct: 75  KGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNII 134

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D  GR+ R  +     + M  +GL P+   Y +L+ AY +    +  L+V + M
Sbjct: 135 TYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM 194

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G++ S  + N+L+    +     EAF + + MK + + +PD  T+++++       +
Sbjct: 195 RADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKEN-DLRPDVITYTTLMKALIRIEQ 253

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +   ++ EM+ +G  P+
Sbjct: 254 FDKVPVIYEEMITSGCAPD 272


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           +M + L D  +  K  ++ + FS + + Y  A      L  +E M+  G+KP +  +N L
Sbjct: 137 KMIWNLVDEMKQRKL-LNGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISDFNKL 195

Query: 163 LDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +D + ++K    + + ++ +M    L PN  +Y  L+  + + +       V REMK+ G
Sbjct: 196 IDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDG 255

Query: 222 MQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
            Q  V  Y  ++ A C    Y DEA  I+ DM  S+N  P    + + IT      ++ E
Sbjct: 256 FQPDVVTYGIIINAYCKAKKY-DEAIGIYHDM-LSKNVNPSPHIYCTFITGLGNGSRMDE 313

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           A   F +   +GF P      +++  Y  + R DD  R +  + ELGI P+ R    +L
Sbjct: 314 AFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIIL 372



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 103/218 (47%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           +++ ++ D   +  +I  Y  A  +D  + +Y +M +  V P+   Y   +  +G   R 
Sbjct: 252 KDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGSRM 311

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +    +++   +G  P   TY +++ AY  +   +D   +  EMKE G+  +   Y+ +
Sbjct: 312 DEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDII 371

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           L      G T EA+ +F+ M S   C+P   T++ M+ +     ++  A  ++NEM + G
Sbjct: 372 LVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKG 431

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             P + + ++LI       + DD  R   ++ ++GI P
Sbjct: 432 ILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRP 469



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 2/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   + A G+Y    ++     P+ + T I   G     D     +E+ KA G  P   
Sbjct: 272 KAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAP 331

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++     + R      I  EM + G+ PN  TY  +L    +    ++  SV++ M
Sbjct: 332 TYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRM 391

Query: 218 -KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             E G + SV+ Y  ++ M  +    D A  ++ +MK  +   P    FS++I       
Sbjct: 392 SSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMK-DKGILPGIHMFSTLIISLCHEN 450

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           K+ +A   F +ML+ G  P   + ++  +    A   + V+    ++ +L  TP
Sbjct: 451 KLDDACRYFQQMLDVGIRPTANMFSAFKRALMAAGMENTVIHFAKKVDKLRNTP 504



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 141/310 (45%), Gaps = 19/310 (6%)

Query: 22  TFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVN 81
           T + SF+R  +L   SK++    S ++Q  Q  NP++  +   +P   +       +   
Sbjct: 2   TLSRSFRRFPNLFPLSKSTSHFESPTVQFIQ--NPSRSLKFHIFPFHTS-------LLHK 52

Query: 82  PKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 141
           P +P A  +      T    V+++       RN    + P     ++     AG      
Sbjct: 53  PNNPHAETICRILSTTPESPVDVSL------RNFPVEVSPELVVAVLNKLSNAGILALSF 106

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
             + E K  G   N   ++ L++ +G+ ++   +  +  EM    L  N +T++ + R Y
Sbjct: 107 FRWAE-KQQGFNHNTEIFHALIEALGKIRQFKMIWNLVDEMKQRKLL-NGDTFSLIARRY 164

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQP 260
            RA+  ++ L  +  M++ G++  ++ +N L+  +C    + ++A E+F+ M+   N +P
Sbjct: 165 VRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQW-NLEP 223

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           +  +++ +I   S +  + + + +  EM + GF+P++     +I  Y KA++ D+ +   
Sbjct: 224 NLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIY 283

Query: 321 NRLPELGITP 330
           + +    + P
Sbjct: 284 HDMLSKNVNP 293


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 118/237 (49%), Gaps = 5/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G + +A  ++D     KW + P+  +F+TLI  Y   G+ D    +   M A G +P+
Sbjct: 148 KEGEMRLAQSVFDAI--TKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPD 205

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY+ L++ + +  +  +   ++ EM DNGL PN  T+ +L+  + +    +  + +Y+
Sbjct: 206 VYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYK 265

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M  +G+   +  YNTL+      G   +  ++ ++M  +   +PD  +++++I      
Sbjct: 266 QMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMN-GLKPDKISYTTLIDGSCKE 324

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           G +  A  + N+M++     +    T+LI C  +  R  D  + L  +  +G+ PD+
Sbjct: 325 GDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDN 381



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   FS L+  Y  +G     +  +   K   ++    T   +L+ +   +    V   Y
Sbjct: 65  DFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFY 124

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KE+ + G   +   +  L++ + +        SV+  + + G++ SV  +NTL+     +
Sbjct: 125 KEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKL 184

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  DE F +   M +S   QPD +T+S +I      GK+ EA  +FNEML+ G  PN   
Sbjct: 185 GDLDEGFRLKSAMHAS-GAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVT 243

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            T+LI  + K ++ D  +    ++   G++PD
Sbjct: 244 FTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPD 275



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 1/190 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           + Y+E+   G   ++  +N L+    +       ++++  +T  GL P+  ++ +L+  Y
Sbjct: 122 DFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGY 181

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            +    ++   +   M   G Q  V  Y+ L+      G  DEA E+F +M  +    P+
Sbjct: 182 IKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDN-GLVPN 240

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
             TF+++I       KV  A  ++ +ML  G  P+L    +LI    K      V   ++
Sbjct: 241 GVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLID 300

Query: 322 RLPELGITPD 331
            +   G+ PD
Sbjct: 301 EMIMNGLKPD 310



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 54/124 (43%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++    L D       + D  +++TLI      G+ +  L +  +M    ++ + +
Sbjct: 288 KKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDV 347

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+  + R  R    + + +EM   GL P+  TY  ++  + + R  +    + REM
Sbjct: 348 AYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREM 407

Query: 218 KEKG 221
           +  G
Sbjct: 408 QRDG 411



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 45/96 (46%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++E+A  L ++   E  R+D  A++ LI      G       +  EM ++G+KP+  
Sbjct: 323 KEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNG 382

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
           TY  +++   + +       + +EM  +G  P   T
Sbjct: 383 TYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 1/210 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           N F+ +I  Y     F   +     M      P+ +TYN +LDT+ +  R    + +  +
Sbjct: 209 NTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMD 268

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   GL PN NTY  L+  Y +  + ++  +V   M +  +   V  YN L+    + G 
Sbjct: 269 MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            +EAF++ ++M++ +   PD  +++++I  C    K+SEA  +  EM E G +PN     
Sbjct: 329 IEEAFKLRDEMENLK-LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHN 387

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +++ Y K  + DD    + ++ E G +PD
Sbjct: 388 IMVKWYCKEGKMDDASNTITKMEESGFSPD 417



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 36/234 (15%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   +E A+ L   AR   + ID  ++ TLI  Y   GN D  L +++EMK   + P+ +
Sbjct: 465 REKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTV 524

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++  + +  +  Q  +   E+ ++GL P+  TY ++L  Y R    E     + +M
Sbjct: 525 TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKM 584

Query: 218 KE-----------------------------------KGMQLSVTLYNTLLAMCADVGYT 242
            E                                   KG  +    YNTL+      G  
Sbjct: 585 VENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRL 644

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           D+AF +  +M+  E   PD +T++++IT  +  G++ EAE   ++MLE G  P+
Sbjct: 645 DDAFNLLSEMEEKE-LGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPD 697



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 117/276 (42%), Gaps = 38/276 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E AF L D   N K   D  +++TLI              + EEM   GVKPN +T+
Sbjct: 327 GRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTH 386

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++    +  +         +M ++G SP+  TY +L+  Y +A    +      EM  
Sbjct: 387 NIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR 446

Query: 220 KGMQL-SVTLYNTLLAMCAD-----------------------------VGY-----TDE 244
           K M++ SVTL   L  +C +                             VGY      D 
Sbjct: 447 KNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDR 506

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           A +++++MK  E   P + T++ +I  +C C GK  +A +  NE+LE+G  P+     ++
Sbjct: 507 ALKLWDEMKEKE-IIPSTVTYNCIIGGLCQC-GKTEQAISKLNELLESGLLPDETTYNTI 564

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           +  Y +    +   +  N++ E    PD   C  LL
Sbjct: 565 LHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILL 600



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 10/266 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW--QVKT 177
           D   ++T++      G      ++  +MK+ G+ PN  TYN L+   G  K  W  +   
Sbjct: 242 DNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILV--YGYCKMGWLKEAAN 299

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + + MT N L P+  TY  L+         E+   +  EM+   +   V  YNTL+  C 
Sbjct: 300 VIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCL 359

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           +     EAF++ E+M S +  +P++ T + M+      GK+ +A     +M E+GF P+ 
Sbjct: 360 EWSKISEAFKLLEEM-SEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDC 418

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356
               +LI  Y KA    +  R ++ +    +  D      +L  + +  K EE  KL+  
Sbjct: 419 VTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLS- 477

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFK 382
              S  K GY +  +     I G FK
Sbjct: 478 ---SARKRGYFIDEVSYGTLIVGYFK 500



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 8/206 (3%)

Query: 107 GLYDRARNEKWRIDPNAFS-------TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  D A N   +++ + FS       TLI  Y  AGN        +EM    +K + +T 
Sbjct: 397 GKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTL 456

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +L T+ R K+  +   +       G   +  +Y +L+  Y +    +  L ++ EMKE
Sbjct: 457 NTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKE 516

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           K +  S   YN ++      G T++A     ++  S    PD  T+++++      G V 
Sbjct: 517 KEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLES-GLLPDETTYNTILHGYCREGDVE 575

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           +A    N+M+E  F+P++F    L++
Sbjct: 576 KAFQFHNKMVENSFKPDVFTCNILLR 601


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 1/207 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G +E AFG+ D   +     D    +TL+  Y  +G  D  L ++ EM    VKP  +T
Sbjct: 561 VGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVT 620

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN +LD + RA R    K ++ EM D+G + + +TY  LL+   R    ++ ++++ ++ 
Sbjct: 621 YNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLG 680

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
               +  +T+ NT++     V   +EA ++F  + S+    P+  T+  MI      G V
Sbjct: 681 AMDCKFDITILNTMINALYKVRRREEANDLFAAI-STSGLVPNVSTYGVMIRNLLKEGSV 739

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            EA+ MF+ M ++G  P+  +L  +I+
Sbjct: 740 EEADTMFSSMEKSGCAPSSRLLNDIIR 766



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 123/264 (46%), Gaps = 38/264 (14%)

Query: 105 AFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           A  +  R   E  R  P+  +F+T+I  +   G      N++ EM   GV P++ TYN++
Sbjct: 214 ALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSI 273

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +D + +A+   + + + ++M D G+ P+  TY +++  Y  + + +++  ++R+M  KG+
Sbjct: 274 VDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGL 333

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS---------------- 266
                 +++ ++     G + +A EIF+ M +++   PD  ++S                
Sbjct: 334 IPDTVTFSSFMSSLCKHGRSKDAEEIFQYM-TTKGHMPDIVSYSILLHGYATEGRFADMN 392

Query: 267 ---------SMITICSC----------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
                     +++ C C          RG + EA  +F EM   G  PN+   ++LI  +
Sbjct: 393 NLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAF 452

Query: 308 GKAQRTDDVVRALNRLPELGITPD 331
            +  R  D +   +++  +GI P+
Sbjct: 453 CRMGRLADAMEKFSQMISIGIEPN 476



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 97/212 (45%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++S L+  Y T G F    N++  M   G+  N    N L+    +     +   ++
Sbjct: 371 DIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVF 430

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM   G+ PN  TY++L+ A+ R     D +  + +M   G++ +  +Y++L+      
Sbjct: 431 TEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMH 490

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A E   +M S    +P+   FSS+I      G+V +A+ +FN ++  G  P +  
Sbjct: 491 GDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVT 550

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SLI  Y    + +     L+ +  +GI PD
Sbjct: 551 FNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPD 582



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 98/198 (49%), Gaps = 8/198 (4%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +  + LI  +   G  D  + V+ EM+  GV+PN++TY+ L+    R  R       + +
Sbjct: 408 HCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQ 467

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQL-SVTLYNTLL-AMCA 237
           M   G+ PN   Y SL+  +G   +G+         EM  KG+   ++  +++++ ++C 
Sbjct: 468 MISIGIEPNTAVYHSLI--HGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCI 525

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           + G   +A ++F  +    + +P   TF+S+I      GK+ +A  + + M+  G EP++
Sbjct: 526 E-GRVMDAQDVFNLVIHIGD-RPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDV 583

Query: 298 FVLTSLIQCYGKAQRTDD 315
               +L+  Y K+ + DD
Sbjct: 584 VTNNTLVSGYCKSGKIDD 601



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 128/285 (44%), Gaps = 15/285 (5%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKRPWQV 175
           I+PN   + +LI  +   G+         EM + G+ +PN++ +++++ ++    R    
Sbjct: 473 IEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDA 532

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + ++  +   G  P   T+ SL+  Y      E    V   M   G++  V   NTL++ 
Sbjct: 533 QDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSG 592

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  D+   +F +M   +  +P + T++ ++      G+ S A+ MF+EM+++G   
Sbjct: 593 YCKSGKIDDGLILFREMLH-KKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAV 651

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-PKEELGKLV 354
           ++     L++   +   TD+ +   ++L  +    D      ++N + +   +EE   L 
Sbjct: 652 DIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLF 711

Query: 355 ECVEKSN-----SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
             +  S      S  G +++ LL+E  +E     EA  +F+S+ K
Sbjct: 712 AAISTSGLVPNVSTYGVMIRNLLKEGSVE-----EADTMFSSMEK 751



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 51/249 (20%)

Query: 134 AGNF--DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA-------KRPWQVKTIYKEMTD 184
           AG F  D   ++++E+   G   +  + N+ L  + RA         P  V  ++  +  
Sbjct: 53  AGTFCTDDAHHLFDELLRQGTPVHNRSLNDFLAALARAPDSVSCSNGPALVLALFNRICR 112

Query: 185 NGLSP-----NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
               P        TY  L+    RAR  +   +    +   G++       T L      
Sbjct: 113 EEAGPRVAPLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHA 172

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICS--------------------C---- 274
             TDEA ++     S  +C PD+ +++++I ++C                     C    
Sbjct: 173 KRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDV 232

Query: 275 ------------RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
                       +G+VS+A  +FNEM++ G  P++    S++    KA+  D     L +
Sbjct: 233 VSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQ 292

Query: 323 LPELGITPD 331
           + + G+ PD
Sbjct: 293 MVDKGVEPD 301



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/138 (18%), Positives = 65/138 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A  ++    +    +D + +  L+K        D  + ++ ++ A+  K ++ 
Sbjct: 630 RAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDIT 689

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
             N +++ + + +R  +   ++  ++ +GL PN +TY  ++R   +    E+  +++  M
Sbjct: 690 ILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSM 749

Query: 218 KEKGMQLSVTLYNTLLAM 235
           ++ G   S  L N ++ M
Sbjct: 750 EKSGCAPSSRLLNDIIRM 767


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 111 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           RA ++     P     L+  Y  +G       V   M+  G+ P++   N LL  + RA 
Sbjct: 37  RALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRAD 96

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
               +  + + M   G+SP+  TY++L+ AY + R  +    V  EM+E+G  L+   YN
Sbjct: 97  AMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYN 156

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEML 289
            L+A     G  +EAF   +DM+      PD +T+ ++I  +C  R + +EA+A+ +EM 
Sbjct: 157 VLIAGLCRSGAVEEAFGFKKDMEDY-GLVPDGFTYGALINGLCKSR-RSNEAKALLDEMS 214

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            A  +PN+ V  +LI  + +    D+  + +  +   G+ P+
Sbjct: 215 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 256



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 125/266 (46%), Gaps = 2/266 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  L  +   +  R D   ++ +I+ +    N      +  EM+  G+ PN+ 
Sbjct: 269 KMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVY 328

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ ++  + ++  P +   + +EMT  GL PN   YA L+  Y R         ++ +M
Sbjct: 329 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 388

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +  +   +  YN+L+   + VG  +E+ + F  M+      P+ +T+S +I      G 
Sbjct: 389 TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ-ERGLLPNEFTYSGLIHGYLKNGD 447

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  AE +   ML+ G +PN  +   L++ Y K+   + V      + + G+  D+R  G 
Sbjct: 448 LESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGI 507

Query: 338 LLNVMTQTPKEELG-KLVECVEKSNS 362
           L++ ++ +   E   +++  +EK+ S
Sbjct: 508 LIHNLSSSGNMEAAFRVLSEIEKNGS 533



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 136/277 (49%), Gaps = 4/277 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ LI  +   GN D    + +EM A GV+PN ITY+NL+  + +  +  +  
Sbjct: 218 LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRAS 277

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + K+M  +   P+  TY  ++  + R    +D   +  EM+  G+  +V  Y+ ++   
Sbjct: 278 LLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGL 337

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  ++A ++ E+M +++  +P+++ ++ +I+     G VS A  +F++M +    P+
Sbjct: 338 CQSGEPEKASDLLEEM-TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPD 396

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVE 355
           L+   SLI    K  R ++  +   ++ E G+ P++  + G +   +     E   +LV+
Sbjct: 397 LYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQ 456

Query: 356 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
            +  +  K   V+ + L E   + D  ++ +  F S+
Sbjct: 457 RMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 493



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 5/237 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           ++ G VE +   +  A+ ++  + PN F  S LI  Y   G+ +    + + M   G+KP
Sbjct: 408 SKVGRVEESTKYF--AQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP 465

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N + Y +LL++  ++    +V + +K M D G+  +   Y  L+     +   E    V 
Sbjct: 466 NDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVL 525

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            E+++ G    V +Y++L++        ++AF I ++M S +   P+   ++++I     
Sbjct: 526 SEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM-SKKGVDPNIVCYNALIDGLCK 584

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G +S A  +FN +L  G  PN    TSLI    K     +     N +   GITPD
Sbjct: 585 SGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPD 641



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 2/220 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           + +GN+E AF +           D + +S+LI       + +    + +EM   GV PN+
Sbjct: 513 SSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNI 572

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + YN L+D + ++      + ++  +   GL PN  TY SL+    +     +   +Y E
Sbjct: 573 VCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNE 632

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G+     +Y+ L   C+  G  ++A  + E+M    +    S  F++++     RG
Sbjct: 633 MLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS--FNNLVDGFCKRG 690

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
           K+ E   + + ++  G  PN   + ++I    +A +  +V
Sbjct: 691 KMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEV 730



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 100/243 (41%), Gaps = 36/243 (14%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ LI     +G  +      ++M+  G+ P+  TY  L++ + +++R  + K +  EM+
Sbjct: 155 YNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 214

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
              L PN   YA+L+  + R    ++   + +EM   G+Q +   Y+ L+     +G  D
Sbjct: 215 CAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMD 274

Query: 244 -----------------------------------EAFEIFEDMKSSENCQPDSWTFSSM 268
                                              +AF +  +M+++    P+ +T+S M
Sbjct: 275 RASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENA-GISPNVYTYSIM 333

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I      G+  +A  +  EM   G +PN FV   LI  Y +           +++ ++ +
Sbjct: 334 IHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNV 393

Query: 329 TPD 331
            PD
Sbjct: 394 LPD 396



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 25/227 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++  AF LY+         D   +S L     +AG+ +  + + EEM   G   ++ 
Sbjct: 619 KVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASIS 677

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           ++NNL+D   +  +  +   +   +   GL PN  T  +++     A    +  +++ E+
Sbjct: 678 SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL 737

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP----------DSWTFSS 267
           ++K  + +   +++L     + G      ++ +DM   ++C+           D     S
Sbjct: 738 QQKTSESAARHFSSLFMDMINQGKI--PLDVVDDM-IRDHCKEGNLDKALMLRDVIVAKS 794

Query: 268 MITICS---------CR-GKVSEAEAMFNEMLEAG-FEPNLFVLTSL 303
               CS         CR GK+SEA  +  EM + G  +P L  L  +
Sbjct: 795 APMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVALLGI 841



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 8/192 (4%)

Query: 160 NNLLDTMGRA--KRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           N LL  M RA    P  + +I++ ++D+G  SP       L+  Y ++   +D   V   
Sbjct: 15  NGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPA--VLDVLVDTYKKSGRVQDAAEVVLM 72

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCR 275
           M+++G+  S+   N LL            +++ E M  +    PD +T+S++I   C  R
Sbjct: 73  MRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGA-GISPDVYTYSTLIEAYCKVR 131

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            +   A+ +  EM E G   N      LI    ++   ++       + + G+ PD    
Sbjct: 132 -EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTY 190

Query: 336 GCLLNVMTQTPK 347
           G L+N + ++ +
Sbjct: 191 GALINGLCKSRR 202


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 106/210 (50%), Gaps = 4/210 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+TLI       N +   ++ ++M A GVK +++TYN L+D + +A R  + + + + M 
Sbjct: 155 FNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMK 214

Query: 184 DNGLSPNWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
            +G +P+   Y+S +  YG  + G+  D   V  +M++     +V  YNT+L      G 
Sbjct: 215 ASGCAPDVVAYSSFV--YGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGK 272

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D A E+ E M SS+ C  +   +S+++      G+  EA ++   M  AG  P++   +
Sbjct: 273 IDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYS 332

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           SL+    KA + ++ V A+  +   G  P+
Sbjct: 333 SLVNGLCKAGKIEEAVEAVREMAMEGCKPN 362



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 9/241 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A  L +R +      D  A+S+ +     +G       V E+M+     PN++
Sbjct: 199 KAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVV 258

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN +LD + ++ +      + ++M + +G   N   Y++++    +    ++  SV   
Sbjct: 259 TYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCR 275
           M   G +  V  Y++L+      G  +EA E   +M + E C+P++ T+ S++  +CSC 
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREM-AMEGCKPNAVTYCSLVHGLCSC- 376

Query: 276 GKVSEAEAMFNEMLEAGFE-----PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           G+++EAE M  EM   G       P++    +LI    KA R DD ++   R+   G  P
Sbjct: 377 GRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDP 436

Query: 331 D 331
           D
Sbjct: 437 D 437



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 2/209 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  N+EMA  L  +      + D   ++TL+     AG       + E MKA G  P+++
Sbjct: 164 REKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVV 223

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y++ +  + ++ +      + ++M D+   PN  TY ++L    ++   +  L +  +M
Sbjct: 224 AYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQM 283

Query: 218 KEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
               G  L+V  Y+T++     +G T EA  + E M  +  C+PD  T+SS++      G
Sbjct: 284 ASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARA-GCRPDVVTYSSLVNGLCKAG 342

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           K+ EA     EM   G +PN     SL+ 
Sbjct: 343 KIEEAVEAVREMAMEGCKPNAVTYCSLVH 371



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 111/231 (48%), Gaps = 9/231 (3%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           +R  +   D   +STL+  Y  AG  +    + +E+ + G++P+ + Y  ++ ++ ++ R
Sbjct: 73  SRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSAR 132

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
             +   + +EM   G  P   T+ +L+    R +  E   S+ ++M   G++  V  YNT
Sbjct: 133 LGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNT 192

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           L+      G   EA ++ E MK+S  C PD   +SS +      GKV +A  +  +M ++
Sbjct: 193 LMDGLCKAGRLQEAEQLLERMKAS-GCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDS 251

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
             +PN+    +++    K+ + D  +  + ++     + D    GC LNV+
Sbjct: 252 HHDPNVVTYNTILDGLCKSGKIDTALEMMEQMA----SSD----GCGLNVV 294



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 112/217 (51%), Gaps = 9/217 (4%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN+  F+ L+  +   G    C  + E M A  ++PN+++YN LL+ + + +R  + + +
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 179 YKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-M 235
            ++M   G   +P+  TY++LL  Y +A   E++  + +E+  +G++    +Y  ++A +
Sbjct: 68  VRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASL 127

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-AEAMFNEMLEAGFE 294
           C      +    + E +++   C P   TF+++I+ C CR K  E A+++  +M  +G +
Sbjct: 128 CKSARLGEALELLEEMIRA--GCCPTLITFNTLISGC-CREKNLEMADSLLQKMAASGVK 184

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++    +L+    KA R  +  + L R+   G  PD
Sbjct: 185 ADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPD 221



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKP 154
           ++G V  A  + ++ R+     DPN   ++T++     +G  D  L + E+M +  G   
Sbjct: 234 KSGKVLDAHQVLEQMRDSHH--DPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGL 291

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N++ Y+ ++D + +  R  + +++ + M   G  P+  TY+SL+    +A   E+ +   
Sbjct: 292 NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAV 351

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM----KSSENCQPDSWTFSSMIT 270
           REM  +G + +   Y +L+      G   EA  + E+M        +C P   T++++I 
Sbjct: 352 REMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIG 411

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
                G++ +A   F  M   G +P+    +++++   ++ R 
Sbjct: 412 GLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRA 454



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 95/197 (48%), Gaps = 7/197 (3%)

Query: 98  RAGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++G ++ A  + ++ A ++   ++   +ST++      G      +V E M   G +P++
Sbjct: 269 KSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDV 328

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY++L++ + +A +  +     +EM   G  PN  TY SL+          +   +  E
Sbjct: 329 VTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEE 388

Query: 217 MKEKGMQL-----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
           M   G        SV+ YN L+      G  D+A + F+ M+S + C PD  ++S+++  
Sbjct: 389 MSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRS-QGCDPDGVSYSTIVEG 447

Query: 272 CSCRGKVSEAEAMFNEM 288
            +  G+  +AE + +E+
Sbjct: 448 LARSGRALQAEMILSEV 464



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 5/159 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  + A  + +       R D   +S+L+     AG  +  +    EM   G KPN +TY
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLS-----PNWNTYASLLRAYGRARYGEDTLSVY 214
            +L+  +    R  + + + +EM+  G       P+ +TY +L+    +A   +D L  +
Sbjct: 367 CSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFF 426

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           + M+ +G       Y+T++   A  G   +A  I  +++
Sbjct: 427 QRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 116/249 (46%), Gaps = 3/249 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPN 155
           R GN+ MA+ L ++  NE    +    +T++     AG     L  + E + +    K N
Sbjct: 258 RVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGN 317

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TY+ L+  +           ++ E    G SP+   Y +++    +A   ED  S+  
Sbjct: 318 AVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            MKE G +L    YN L+A         EA+E+ ++MK     +PD  T++++++     
Sbjct: 378 SMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEV-GIRPDVCTYNTLLSGSCKA 436

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G  +  + +  +M++ G +P++    +L+  Y K  + D+ +R L  + E GI P++   
Sbjct: 437 GDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIY 496

Query: 336 GCLLNVMTQ 344
             L++ + +
Sbjct: 497 NTLIDFLCK 505



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 109/226 (48%), Gaps = 1/226 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T+AG +E A  +    +   +++D  A++ LI  +           + +EMK +G++P++
Sbjct: 364 TQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDV 423

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN LL    +A     V  +  +M D+G  P+  T+ +L+  Y +    ++ L + R 
Sbjct: 424 CTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRS 483

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G+  +  +YNTL+      G  D A E+F++MK  ++   +  TF++++     + 
Sbjct: 484 MDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMK-EKSVPANVTTFNALLKGLRDKN 542

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
              +A  + ++M E    P+   +  L++       TD + R + +
Sbjct: 543 MPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQ 588



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 40/254 (15%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--KAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R D   +  L+     AG     L V + M  + + ++P+++T N ++D + ++ R  + 
Sbjct: 169 RPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEA 228

Query: 176 KTIYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
               ++     +G  PN  TY  L+ A+ R         +  +M+ +G+  ++   NT++
Sbjct: 229 LAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIV 288

Query: 234 AMCADVGYTDEAFEIFEDMKS------------------------------------SEN 257
                 G T  A E F + ++                                    SE 
Sbjct: 289 GGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEG 348

Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
             PD+  + +MI+  +  G++ +A +M + M EAGF+ +      LI  + + +R  +  
Sbjct: 349 HSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAY 408

Query: 318 RALNRLPELGITPD 331
             L  + E+GI PD
Sbjct: 409 ELLQEMKEVGIRPD 422


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 44/282 (15%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G VE A  L    + +   +D   +STLI  + + G  D    +++EM   G+ PN++
Sbjct: 57  KEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVV 116

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARY-------- 206
            Y+ L++   +     +   +   MT+ G+ P+  TY  ++      GRAR         
Sbjct: 117 VYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLM 176

Query: 207 ---GE---------------------DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              GE                     D   ++  M EKG +L V  YNTL+    + G  
Sbjct: 177 TEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKL 236

Query: 243 DEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
           DEA ++F  +    N  +PD  TF+++I      G++ +A  +++ M+E G   NLF   
Sbjct: 237 DEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCH 296

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
            LI  Y K+   D  +    R+ +LG+ P         D FC
Sbjct: 297 ILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFC 338



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 110/234 (47%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  +YD         +      LI  Y  +G  D  + +++ +  +G+ P+  
Sbjct: 269 KEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSST 328

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ ++D   +       K ++  M  +GLSP    Y +L+ +  +    E    +++EM
Sbjct: 329 TYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEM 388

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KE   +     +N ++      G    A E+  DM+      PD++T+SS I   S  G+
Sbjct: 389 KESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQM-GLTPDAYTYSSFINRLSKLGQ 447

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + EA+  F+ M+ +G  P+  V  SLI+ +G     ++V+  L ++ ++G+  D
Sbjct: 448 MEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILD 501



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 90/184 (48%), Gaps = 1/184 (0%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           MK I + P++++YN +++ + + KR  +   +  EM  +   PN  TY  L+    +   
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            E+ + +  EMK KG+++ V +Y+TL++     G  D    +F++M   +   P+   +S
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEM-LEKGISPNVVVYS 119

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            +I     +G   EA A+ + M E G +P+++  T +I    K  R    +   + + E 
Sbjct: 120 CLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179

Query: 327 GITP 330
           G  P
Sbjct: 180 GEEP 183



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 108/236 (45%), Gaps = 3/236 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPN 155
           + G +  AF +++    +  R++  +++TLI      G  D  + ++  +   G  V+P+
Sbjct: 197 KEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPD 256

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +IT+N ++  + +  R  +   IY  M + G   N  T   L+  Y ++   +  + +++
Sbjct: 257 VITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWK 316

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            + + G+  S T Y+ ++     +   + A  +F  MK S    P  + +++++      
Sbjct: 317 RVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKIS-GLSPTLFDYNTLMASLCKE 375

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + +A  +F EM E+  EP+      +I    KA         LN + ++G+TPD
Sbjct: 376 SSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPD 431



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 1/208 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++T+I         +  +++  EM+    +PN  TY  L+D + +  R  +   + 
Sbjct: 9   DIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLL 68

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM   GL  +   Y++L+  +      +   +++ EM EKG+  +V +Y+ L+      
Sbjct: 69  GEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKK 128

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA  +   M +    QPD +T++ MI      G+  +A  +F+ M E G EP+   
Sbjct: 129 GLWREATAVLHTM-TERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELG 327
              LI    K     D  +    + E G
Sbjct: 188 YNVLINGLCKEGCIGDAFKIFETMLEKG 215



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 71/136 (52%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +  ++E A  L+   +      D  +F+ +I     AG+      +  +M+ +G+ P+  
Sbjct: 374 KESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAY 433

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++ ++ + +  +  + K  +  M  +G++P+ + Y SL++ +G     E+ +++ R+M
Sbjct: 434 TYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQM 493

Query: 218 KEKGMQLSVTLYNTLL 233
            + G+ L + + N++L
Sbjct: 494 ADMGVILDLEITNSIL 509


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 9/238 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++ MA   +D   +E   +D  A++T I      G+     ++ EEM A G  P++I
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLI 515

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 214
            YN ++D + +     +   + ++M  +G+ P++ TY S++ A+   GR R G +   ++
Sbjct: 516 IYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGRE---IF 572

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICS 273
            EM  KG+  SV  Y  L+   A  G  + AF  F +M+  +   P+  T++S+I  +C 
Sbjct: 573 YEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQ-EKGILPNVITYNSLINGLCK 631

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            R ++ +A   F EM+E G  PN +  T LI          + +    ++ + G+ PD
Sbjct: 632 VR-RMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD 688



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 107/215 (49%), Gaps = 3/215 (1%)

Query: 96  DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + + G+   AF L +    + +  D   ++ ++      GN +    + ++M + GV P+
Sbjct: 489 ELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPD 548

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVY 214
            +TY +++       R  + + I+ EM   GL+P+  TY  L+  + G+ R  E     +
Sbjct: 549 YVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRL-ERAFIYF 607

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM+EKG+  +V  YN+L+     V   D+A+  F +M   +   P+ ++++ +I     
Sbjct: 608 SEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEM-VEKGIFPNKYSYTILINENCN 666

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
            G   EA +++ +ML+ G +P+    ++L++  GK
Sbjct: 667 MGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGK 701



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 1/206 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           VE    ++D+    +   D    + ++++          + VY  M   G+KP ++TYN 
Sbjct: 180 VEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LLD+  +  +  Q   +  EM   G +PN  TY  L+    +    E    +  EM + G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +++S   YN L+    + G   EA  + E+M   +   P   T++S I      G++S+A
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEM-VLKGASPTVATYNSFIYGLCKLGRMSDA 358

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCY 307
               ++ML     P++    +LI  Y
Sbjct: 359 MQQLSDMLANNLLPDVVSYNTLIYGY 384



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 7/238 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G  E A GL         ++    ++ LI  Y   G     L++ EEM   G  P +
Sbjct: 280 SKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTV 339

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN+ +  + +  R         +M  N L P+  +Y +L+  Y R         ++ E
Sbjct: 340 ATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDE 399

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++   +  ++  YNTLL      G  + A ++  +M  +E   PD  T++ ++      G
Sbjct: 400 LRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEM-INEGIAPDIVTYTILVNGSCKMG 458

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPD 331
            +S A+  F+EML  G E + +   + I   G+  +  D  RA +   E+   G  PD
Sbjct: 459 SLSMAQEFFDEMLHEGLELDSYAYATRI--VGEL-KLGDTSRAFSLQEEMLAKGFPPD 513



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 5/209 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+    L    +      +   ++ LI      G F+    +  EM   G+K +  
Sbjct: 246 KGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAY 305

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYR 215
           TYN L+          +  ++ +EM   G SP   TY S +  YG  + G   D +    
Sbjct: 306 TYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFI--YGLCKLGRMSDAMQQLS 363

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M    +   V  YNTL+     +G   +AF +F++++S     P   T+++++     +
Sbjct: 364 DMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY-LFPTIVTYNTLLDGLCRQ 422

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           G++  A+ +  EM+  G  P++   T L+
Sbjct: 423 GELEVAQQLKVEMINEGIAPDIVTYTILV 451



 Score = 38.9 bits (89), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 26/130 (20%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           ++SV + + L+ + +     ++   +F+ M  S    PD    + ++ I   +  +S+A 
Sbjct: 161 EVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSR-LSPDVKNCNRILRILRDKDLMSKAV 219

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
            ++  M E G +P +    +L+  Y K  +    +  L+ +   G  P+D     L+N +
Sbjct: 220 EVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGL 279

Query: 343 TQTPKEELGK 352
           ++  + E  K
Sbjct: 280 SKKGEFEQAK 289


>gi|449447683|ref|XP_004141597.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like [Cucumis sativus]
          Length = 600

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 120/256 (46%), Gaps = 6/256 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R    E+A   Y +     ++   +    +I      G +D  L V+++M   G++PN 
Sbjct: 301 VRCNQNELAIDTYVKMVQNSFKPGNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNS 360

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +++N L++ +G+AK      ++Y  M   G SP+  T+ +LL A  +A    D + ++  
Sbjct: 361 VSFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGALYKANRYSDAIHLFEF 420

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K + +QL++ +YNT+L  C+ +G  + A +I  +M+ S      + +++ ++T C    
Sbjct: 421 VKREKVQLNIHIYNTILMSCSKLGLWERAVQILWEMEVS-GLSISTSSYNIVMTACEMAR 479

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K   A  ++  M+     P+ F   SLI+C       D+V   LN+       PD     
Sbjct: 480 KPEIALQVYERMVHQKHTPDTFTHLSLIRCCIWGSLWDEVELLLNK-----SAPDVSVYN 534

Query: 337 CLLNVMTQTPKEELGK 352
            ++  M    K +L K
Sbjct: 535 VVIQGMCLRGKSDLAK 550


>gi|357153642|ref|XP_003576519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Brachypodium distachyon]
          Length = 620

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 116/246 (47%), Gaps = 5/246 (2%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           RIDPN   +ST+I +    G       ++  MK  GV+PN+ TYN L+ +  +     + 
Sbjct: 190 RIDPNVVTYSTMICVLCEEGCVIEAERLFIMMKETGVQPNLYTYNALMSSHCKRDGVNRT 249

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
            T+Y+E+  +GL PN     +L+  +  A    D  + + EM   G+  +V +YN+L+  
Sbjct: 250 LTLYQELLKSGLVPNAVIITTLIGGFFLANRISDVKNAFLEMHRYGIAPTVPVYNSLIDG 309

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               GY  EA  +++DM     C PD +T S ++    C G+V  A      M ++G   
Sbjct: 310 AFRSGYAQEALTVYQDMTRVGLC-PDEFTCSIIVRGLCCGGQVQVATRFLELMQQSGINL 368

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE--LGKL 353
           N     +LI  + K     + +    R+ E+GI P+      L++  ++  K E  +G  
Sbjct: 369 NAAAYNALIDEHCKDGNLAEALATCTRMNEVGIEPNVVTYSSLIDGHSKKRKMEIAMGIY 428

Query: 354 VECVEK 359
           +E V K
Sbjct: 429 MEMVAK 434



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 11/217 (5%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA   +TLI  +  A       N + EM   G+ P +  YN+L+D   R+    +  T+
Sbjct: 263 PNAVIITTLIGGFFLANRISDVKNAFLEMHRYGIAPTVPVYNSLIDGAFRSGYAQEALTV 322

Query: 179 YKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-A 234
           Y++MT  GL P+  T + ++R     G+ +     L +   M++ G+ L+   YN L+  
Sbjct: 323 YQDMTRVGLCPDEFTCSIIVRGLCCGGQVQVATRFLEL---MQQSGINLNAAAYNALIDE 379

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
            C D G   EA      M      +P+  T+SS+I   S + K+  A  ++ EM+  G E
Sbjct: 380 HCKD-GNLAEALATCTRMNEV-GIEPNVVTYSSLIDGHSKKRKMEIAMGIYMEMVAKGVE 437

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           PN+   T++I  + K    D   R    + E GI+ +
Sbjct: 438 PNVLTYTAMIHGHAKFGDLDAAFRLHKEMAEKGISSN 474



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
              L+      G  D  L+V+  +  +   P +   N +LD + +A+R  +V  ++ EM 
Sbjct: 96  LGVLVIALSQMGLHDDALSVFCRLPTL---PALPACNAILDGLVKARRFDRVWKLFDEML 152

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ P+  TY +L+ A            V+ +M  + +  +V  Y+T++ +  + G   
Sbjct: 153 SRGMVPSLVTYNTLVNACRHEGDMTKAWEVWNQMVARRIDPNVVTYSTMICVLCEEGCVI 212

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  +F  MK +   QP+ +T++++++    R  V+    ++ E+L++G  PN  ++T+L
Sbjct: 213 EAERLFIMMKET-GVQPNLYTYNALMSSHCKRDGVNRTLTLYQELLKSGLVPNAVIITTL 271

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
           I  +  A R  DV  A   +   GI P
Sbjct: 272 IGGFFLANRISDVKNAFLEMHRYGIAP 298



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 105/229 (45%), Gaps = 23/229 (10%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G V++A    +  +     ++  A++ LI  +   GN    L     M  +G++PN++T
Sbjct: 348 GGQVQVATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEALATCTRMNEVGIEPNVVT 407

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYRE 216
           Y++L+D   + ++      IY EM   G+ PN  TY +++  +G A++G  +    +++E
Sbjct: 408 YSSLIDGHSKKRKMEIAMGIYMEMVAKGVEPNVLTYTAMI--HGHAKFGDLDAAFRLHKE 465

Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFE---------------DMKSSENCQP 260
           M EKG+  +    + L+  +C +    D    I +               +  + E+C  
Sbjct: 466 MAEKGISSNAITVSVLVDGLCRESRVQDAVMFIMKYAGQKKPGDINSFCSNYTTEEDCSI 525

Query: 261 -DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI--QC 306
            +S T+ ++I      G+  EA   F+ M E+   P+ F  + LI  QC
Sbjct: 526 LNSVTYMTLIYGLYIDGQYHEAGKFFSCMRESDMVPDSFTYSLLIRGQC 574



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 7/139 (5%)

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           ++L    +AR  +    ++ EM  +GM  S+  YNTL+  C   G   +A+E++  M  +
Sbjct: 130 AILDGLVKARRFDRVWKLFDEMLSRGMVPSLVTYNTLVNACRHEGDMTKAWEVWNQM-VA 188

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
               P+  T+S+MI +    G V EAE +F  M E G +PNL+   +L+  + K    D 
Sbjct: 189 RRIDPNVVTYSTMICVLCEEGCVIEAERLFIMMKETGVQPNLYTYNALMSSHCK---RDG 245

Query: 316 VVRALNRLPEL---GITPD 331
           V R L    EL   G+ P+
Sbjct: 246 VNRTLTLYQELLKSGLVPN 264


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 105/228 (46%), Gaps = 1/228 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D + F+     Y   G  D  ++++ +M+  G+ PN++ Y  L+D + +  R    +  +
Sbjct: 308 DHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKF 367

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M + G++PN   + SL+         E    +  EM ++G+  +   +NTL+    +V
Sbjct: 368 NQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNV 427

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   E   +  D+      +PD+++++ +I+     G+  EAE +F+ M+  G  P    
Sbjct: 428 GRVMEGRRLI-DLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVT 486

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
             +L+  Y  A R DD       +   G+TP       +L+ + QT +
Sbjct: 487 YNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKR 534



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 120/269 (44%), Gaps = 13/269 (4%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PNA  F+TLI      G       + + M+ +GV+P+  +Y  L+     A R  + +
Sbjct: 410 ICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAE 469

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++  M   GLSP   TY +LL  Y  A   +D   ++REM  KG+   V  YNT+L   
Sbjct: 470 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 529

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                  EA E++ +M +S   + D +T++ ++        V EA  MF  +   G + N
Sbjct: 530 FQTKRFSEAKELYLNMINSGT-KCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLN 588

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD---RFCGCLLNVMTQTPKEELGKL 353
           +   T +I    K  R +D +     +P  G+ P+    R      N++ +   EE   L
Sbjct: 589 IITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVA--ENLIEEGSLEEFDSL 646

Query: 354 VECVEKSNSK-----LGYVVKLLLEEQDI 377
              +EK+ +      L  +V+ LL   DI
Sbjct: 647 FSAMEKNGTAPNSQMLNALVRRLLHRGDI 675



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 107/227 (47%), Gaps = 4/227 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A G++ +  +   + + + ++ LI  Y + G +   + + E+M A G+KP+  TY +LL+
Sbjct: 226 AEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLN 285

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +       ++ +    M +NGLSP+ + +     AY +    +  + ++ +M++ G+  
Sbjct: 286 YLCALS---EMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSP 342

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  Y  L+     +G  D+A   F  M  +E   P+   F+S++       K   AE +
Sbjct: 343 NVVNYGALIDALCKLGRVDDAEVKFNQM-INEGVTPNIVVFNSLVYGLCTVDKWERAEEL 401

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EML+ G  PN     +LI       R  +  R ++ +  +G+ PD
Sbjct: 402 VYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPD 448



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 6/179 (3%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN++TY  ++D + +A+   + + ++++M DNG+ PN +TY  L+  Y      ++ + +
Sbjct: 205 PNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQM 264

Query: 214 YREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
             +M  +G++     Y +LL  +CA           F D+       PD   F+   +  
Sbjct: 265 LEKMSARGLKPDCYTYGSLLNYLCA-----LSEMHSFLDLMVENGLSPDHHIFNIFFSAY 319

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  G + +A  +FN+M + G  PN+    +LI    K  R DD     N++   G+TP+
Sbjct: 320 AKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPN 378



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 117/255 (45%), Gaps = 10/255 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY-EEMKAIGVKPNM 156
           R G ++ +F  +       WR++    + L+K           ++V  + M  +G  P+ 
Sbjct: 110 RMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDT 169

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLS--PNWNTYASLLRAYGRARYGEDTLSV 213
           ++Y+ LL       R  +   + + M  D+G S  PN  TY +++    +A+  +    V
Sbjct: 170 VSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGV 229

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-IC 272
           +++M + G++ +   YN L+     +G   E  ++ E M S+   +PD +T+ S++  +C
Sbjct: 230 FQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKM-SARGLKPDCYTYGSLLNYLC 288

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +    +SE  +  + M+E G  P+  +       Y K    D  +   N++ + G++P+ 
Sbjct: 289 A----LSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNV 344

Query: 333 RFCGCLLNVMTQTPK 347
              G L++ + +  +
Sbjct: 345 VNYGALIDALCKLGR 359



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 129/300 (43%), Gaps = 8/300 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            + G ++ A  ++++ R      +   +  LI      G  D     + +M   GV PN+
Sbjct: 320 AKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNI 379

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSV 213
           + +N+L+  +    +  + + +  EM D G+ PN   +NT    L   GR   G   + +
Sbjct: 380 VVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDL 439

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
              M+  G++     Y  L++     G TDEA ++F+ M S     P   T+++++    
Sbjct: 440 ---MEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSI-GLSPTEVTYNTLLHGYC 495

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
              ++ +A  +F EML  G  P +    +++    + +R  +       +   G   D  
Sbjct: 496 SASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIY 555

Query: 334 FCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
               +LN + ++   +E  K+ + +     +L  +   ++    ++G  K++A +LF +I
Sbjct: 556 TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAI 615



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYG 207
           +I V PN  TY+ L+  + R  R       +  +   G   N      LL+      R G
Sbjct: 91  SIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVG 150

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQPDSWTF 265
           E    + + M E G       Y+ LL    +    +EA E+   M +    +C P+  T+
Sbjct: 151 EAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTY 210

Query: 266 SSMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           +++I    C+ ++   AE +F +M++ G +PN      LI  Y    +  +VV+ L ++ 
Sbjct: 211 TTVID-GLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMS 269

Query: 325 ELGITPDDRFCGCLLNVM 342
             G+ PD    G LLN +
Sbjct: 270 ARGLKPDCYTYGSLLNYL 287


>gi|62320562|dbj|BAD95174.1| hypothetical protein [Arabidopsis thaliana]
          Length = 468

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLIK Y      D    V   M+  G++P++ TYN+L+    +     +V  ++
Sbjct: 47  DVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLVLNRVLQLF 106

Query: 180 KEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            EM  +GLSP+  +Y +L+  Y +  R+GE    ++ ++   G+   +  YN LL     
Sbjct: 107 DEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCK 166

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            G+TD A E+F+ +KS    +P+  T++ +I  +C  R +V   + M  E+ ++G+ PN 
Sbjct: 167 SGHTDNAIELFKHLKS--RVKPELMTYNILINGLCKSR-RVGSVDWMMRELKKSGYTPNA 223

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC-LLNVMTQTPKEE 349
              T++++ Y K +R +  ++   ++ + G T D  F  C +++ + +T + E
Sbjct: 224 VTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDG-FANCAVVSALIKTGRAE 275



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + ++ L+     +G+ D  + +++ +K+  VKP ++TYN L++ + +++R   V  + +E
Sbjct: 155 DTYNILLDALCKSGHTDNAIELFKHLKS-RVKPELMTYNILINGLCKSRRVGSVDWMMRE 213

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +  +G +PN  TY ++L+ Y + +  E  L ++ +MK++G          +++     G 
Sbjct: 214 LKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGR 273

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            +EA+E   ++  S     D  ++++++ +    G +   + +  E+   G +P+ +  T
Sbjct: 274 AEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHT 333

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
            ++        T    + L  + E+G+ P    C CL++
Sbjct: 334 IIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLID 372


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 112/237 (47%), Gaps = 2/237 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ AF ++   R +        ++ LI        F   + +  ++  +G+ PN++TY
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTY 336

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++     ++      ++ ++  +GLSP   TY +L+  Y +       L + +EM+E
Sbjct: 337 NILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEE 396

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           + +  S   Y  L+   A + +T++A E+   M+ S    PD +T+S ++      G + 
Sbjct: 397 RCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKS-GLVPDVYTYSVLLHGLCVHGNMK 455

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFC 335
           EA  +F  + E   +PN  +  ++I  Y K   +   +R LN + + G+ P+   FC
Sbjct: 456 EASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFC 512



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 103/216 (47%), Gaps = 3/216 (1%)

Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           K  +D  +F  +IK    AG F     +   ++  G+ PN++ Y  L+D   +       
Sbjct: 153 KVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLA 212

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           K ++ +M   GL PN +TY+ L+  + +     +   +Y  MK  G+  +   YN L++ 
Sbjct: 213 KNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISE 272

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFE 294
             + G  D+AF++F +M+  +       T++ +I    CRG K  EA  + +++ + G  
Sbjct: 273 YCNDGMVDKAFKVFAEMR-EKGIACGVMTYNILIG-GLCRGKKFGEAVKLVHKVNKVGLS 330

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           PN+     LI  +   ++ D  VR  N+L   G++P
Sbjct: 331 PNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSP 366



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 3/217 (1%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  + PN   ++ LI  +      D  + ++ ++K+ G+ P ++TYN L+    + +   
Sbjct: 326 KVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLA 385

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
               + KEM +  ++P+  TY  L+ A+ R  + E    ++  M++ G+   V  Y+ LL
Sbjct: 386 GALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLL 445

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G   EA ++F+ +    + QP+S  +++MI      G    A  + NEM+++G 
Sbjct: 446 HGLCVHGNMKEASKLFKSL-GEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGM 504

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            PN+    S I    + ++  +    L ++   G+ P
Sbjct: 505 VPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKP 541



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 6/187 (3%)

Query: 158 TYNNLLDTMGRA----KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           TY  L DT+  A        Q  T    M   G  P  NT+ +LL    R+ Y +    +
Sbjct: 87  TYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWI 146

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + E+K K + L    +  ++  C + GY  + F +   M       P+   ++++I  C 
Sbjct: 147 FNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLA-MLEEFGLSPNVVIYTTLIDGCC 204

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G V  A+ +F +M   G  PN    + L+  + K     +  +    +   GI P+  
Sbjct: 205 KDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAY 264

Query: 334 FCGCLLN 340
              CL++
Sbjct: 265 AYNCLIS 271



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 112/276 (40%), Gaps = 15/276 (5%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           + T++  Y  + + D  L     M   G  P   T+NNLL  + R+    +   I+ E+ 
Sbjct: 92  YDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELK 151

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
              +   + ++  +++    A Y      +   ++E G+  +V +Y TL+  C   G   
Sbjct: 152 SKVVLDAY-SFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVM 210

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A  +F  M +     P+  T+S ++     +G   E   M+  M  +G  PN +    L
Sbjct: 211 LAKNLFCKM-NRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCL 269

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL-LNVMTQ--TPKEELGKLVECVEKS 360
           I  Y      D   +    + E GI      CG +  N++       ++ G+ V+ V K 
Sbjct: 270 ISEYCNDGMVDKAFKVFAEMREKGIA-----CGVMTYNILIGGLCRGKKFGEAVKLVHKV 324

Query: 361 NSKLGYVVKLLLEEQDIEG--DFKK--EATELFNSI 392
           N K+G    ++     I G  D +K   A  LFN +
Sbjct: 325 N-KVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQL 359



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 115 EKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  + P+ ++  + L+G    GN      +++ +  + ++PN + YN ++    +    
Sbjct: 430 EKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSS 489

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
           ++   +  EM  +G+ PN  ++ S +    R    ++   +  +M   G++ SV+LY  +
Sbjct: 490 YRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549

Query: 233 LAMCADV 239
             +  DV
Sbjct: 550 HKVKGDV 556


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 7/250 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G VE AF + +   +     D  +++  I+   + G  +    V+E M   G KP+M TY
Sbjct: 260 GKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTY 319

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             ++D   +         + + M    + PN   Y  ++  + ++   E+ L +Y+ + +
Sbjct: 320 GIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILK 379

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKV 278
            G+  S   YNT++     +   DEA E+  +M +  E  +P   T+S +I      GKV
Sbjct: 380 DGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMII---HGLGKV 436

Query: 279 SEAEAMFN---EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
              E  F+   EM++ G  P+ F  TSLIQ    A +    +  L  + + GI PDD   
Sbjct: 437 GMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTY 496

Query: 336 GCLLNVMTQT 345
           G L+ ++ ++
Sbjct: 497 GTLVQILCRS 506



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 143/320 (44%), Gaps = 12/320 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ ++     AGN+D  L  YE+M A   +P ++TY  L+D + +A +  +   ++
Sbjct: 105 DSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVF 164

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM   G  P+   Y+SL+    +A   ++   +   M  +G   +   Y +++A     
Sbjct: 165 EEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKC 224

Query: 240 GYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G   EA +  ++M+        D+++F  ++T     GKV EA A+  EM +    P+  
Sbjct: 225 GRIQEAVKTIQEMRRRRLRPRVDTYSF--IVTGYIGMGKVEEAFAVMEEMADRDCAPDTI 282

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKLVECV 357
             T  I+      R ++  +    + E G  PD    G ++ N   +        ++  +
Sbjct: 283 SYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLM 342

Query: 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENA 417
           +K+  K    +  ++ +  ++    +EA EL+  I KD        ++   V  N + NA
Sbjct: 343 DKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKD-------GILPSTVTYNTVINA 395

Query: 418 -CKLLELGLTLEVYTDIQSR 436
            CKL ++   LE+  ++Q R
Sbjct: 396 LCKLKKMDEALELLREMQRR 415



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 89/193 (46%), Gaps = 6/193 (3%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           +K  + PN   ++ ++  +  +   +  L +Y+ +   G+ P+ +TYN +++ + + K+ 
Sbjct: 343 DKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKM 402

Query: 173 WQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
            +   + +EM      L P+  TY+ ++   G+    E    +  EM + G+      Y 
Sbjct: 403 DEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYT 462

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
           +L+   A  G    A E+ E+M  +    PD  T+ +++ I  CR  V  A  +  EM+ 
Sbjct: 463 SLIQTLAGAGKVSRAMELLEEMLKA-GIFPDDHTYGTLVQIL-CRSDVDAAWDLLQEMMR 520

Query: 291 AGFEPNLFVLTSL 303
            G  PN F   ++
Sbjct: 521 NGHTPNEFTFKAV 533



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 101/236 (42%), Gaps = 15/236 (6%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            R G +  A G +  + +E     PN  +F+ L++ +    +F+    +  EMKA G+  
Sbjct: 8   VRGGQLSDALGFFQSSISE-----PNVSSFNILLRGFAARDDFEVVNALLREMKARGITS 62

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-------SPNWNTYASLLRAYGRARYG 207
           N  T+  +L  +   +   +  + +   T+          +P+  TY +++    +A   
Sbjct: 63  NGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNY 122

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           +  L  Y +M     + ++  Y  L+         + A ++FE+M    + +PD   +SS
Sbjct: 123 DAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGH-KPDIIAYSS 181

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           +I   S  G+V EA  + + M+  G  P     TS++    K  R  + V+ +  +
Sbjct: 182 LIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEM 237



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 17/179 (9%)

Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD------VGY 241
           PN +++  LLR +      E   ++ REMK +G+  +   +  +L A+CA       V Y
Sbjct: 27  PNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSALCARRDLDKAVSY 86

Query: 242 ----TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
               T+EA  +FE +++     PDS T+++++      G        + +M+ +  EP L
Sbjct: 87  FNSRTEEACRLFEAIEA-----PDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTL 141

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355
              T L+    KA + +        +   G  PD      L++ +++  + +E  KLV+
Sbjct: 142 LTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVD 200


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 135/280 (48%), Gaps = 3/280 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D + F+ +   Y      D  ++++++M+   + PN++TY  L+D + +  R       +
Sbjct: 341 DHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKF 400

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M D G++P+   ++SL+         E    ++ E+ ++G++L    +NTL+      
Sbjct: 401 NQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCRE 460

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA  +  D+      +PD  ++++++      G++ EA  + + ++  G +P+   
Sbjct: 461 GRVMEAQRLI-DLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVT 519

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358
             +L+  Y KA+R DD       +   G+TPD      +L+ + QT +  E  +L   + 
Sbjct: 520 YNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMI 579

Query: 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK 397
            S +++      ++     + +F  EA ++F+S+ SKD++
Sbjct: 580 NSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQ 619



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 3/211 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+ A G++    ++  R + + ++ LI  Y + G +   + + +EM   G++P+  
Sbjct: 214 KAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCY 273

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  LLD + +  R  + + I+  +   G+ PN   Y  LL  Y       +  S    M
Sbjct: 274 IYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLM 333

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+     ++N +    A     DEA  IF+ M+  +   P+  T+ ++I      G+
Sbjct: 334 VGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMR-QQRLSPNIVTYGALIDALCKLGR 392

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
           V +A   FN+M++ G  P++FV +SL+  YG
Sbjct: 393 VDDAVLKFNQMIDEGMTPDIFVFSSLV--YG 421



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 34/212 (16%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN++TY  ++D + +A+   + K +++ M D G+ PN +TY  L+  Y      ++ + +
Sbjct: 200 PNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQM 259

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE----------------------- 250
            +EM   G+Q    +Y  LL      G   EA  IF+                       
Sbjct: 260 LQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYAT 319

Query: 251 -----------DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
                      D+       PD   F+ M    + +  + EA  +F++M +    PN+  
Sbjct: 320 EGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVT 379

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +LI    K  R DD V   N++ + G+TPD
Sbjct: 380 YGALIDALCKLGRVDDAVLKFNQMIDEGMTPD 411



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 117/247 (47%), Gaps = 11/247 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V  A  L D       R D  +++TL+  +   G  D    + + + +IG+KP+ +
Sbjct: 459 REGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKV 518

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDTLSVYRE 216
           TYN LL    +A+R     ++++EM   GL+P+  TY ++L   +   R+ E    +Y  
Sbjct: 519 TYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAK-ELYLS 577

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M     Q+++  YN ++       + DEAF++F  +  S++ Q D +T + MI      G
Sbjct: 578 MINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSL-CSKDLQLDIFTANIMIGALLKGG 636

Query: 277 KVSEAEAMFNEMLEAGFEPNL----FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +  +A  +F  +   G  P++     +  +LI+  G  +  D++  A+    E G  P+ 
Sbjct: 637 RKEDAMDLFATISAYGLVPDVETYCLIAENLIK-EGSLEELDELFSAME---ENGTAPNS 692

Query: 333 RFCGCLL 339
           R    L+
Sbjct: 693 RMLNALV 699



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 113/250 (45%), Gaps = 10/250 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVY-EEMKAIGVKPN 155
           R G ++  F  +       WR+ D   FS L+K    A   D   ++    M   G  P+
Sbjct: 104 RMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPD 163

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG---LSPNWNTYASLLRAYGRARYGEDTLS 212
           + +Y+ LL      KR  +   +   M D+G    +PN  TY +++    +A+  +    
Sbjct: 164 VFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKG 223

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           V++ M +KG++ +   Y  L+     +G   E  ++ ++M S+   QPD + ++ ++   
Sbjct: 224 VFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEM-STHGLQPDCYIYAVLLDYL 282

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              G+ +EA  +F+ ++  G +PN+ +   L+  Y       ++   L+ +   G++PD 
Sbjct: 283 CKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDH 342

Query: 333 RFCGCLLNVM 342
                + N+M
Sbjct: 343 H----IFNIM 348



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 109/237 (45%), Gaps = 1/237 (0%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D    +  + +   +  L+  Y T G+     +  + M   GV P
Sbjct: 281 YLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSP 340

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +   +N +     +     +   I+ +M    LSPN  TY +L+ A  +    +D +  +
Sbjct: 341 DHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKF 400

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M ++GM   + ++++L+     V   ++A E+F ++   +  + D+  F++++     
Sbjct: 401 NQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVL-DQGIRLDTVFFNTLMCNLCR 459

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+V EA+ + + ML  G  P++    +L+  +    R D+  + L+ +  +G+ PD
Sbjct: 460 EGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPD 516


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 1/213 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ A  L+D   +   + +   F+ LI  +G  GN    + +YE+M  +G  P+++
Sbjct: 297 KLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVV 356

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+D   R     Q   +++EM    LSPN  TYA L+ A  +     +  +  R +
Sbjct: 357 TFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHL 416

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K   +     +YN ++      G  DEA  I  +M+  + C+PD  TF+ +I     +G+
Sbjct: 417 KSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKK-CRPDKITFTILIIGNCMKGR 475

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           + EA + F +M+E    P+   + SLI C  KA
Sbjct: 476 MVEAISTFYKMIEINCVPDEITINSLISCLLKA 508



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D  R++    D +    L+  Y   G  D   N   E+   G+K +   YNNLL+ + 
Sbjct: 131 VFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLV 190

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     +   +++E  +    P+  ++  L+R   R    +     ++ M   G    + 
Sbjct: 191 KQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIV 250

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YNTL+     V    +  ++ ++    +   PD  T++S+I+     G +  A  +F+E
Sbjct: 251 SYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDE 310

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M+ +G +PN F    LI  +GK       +    ++  LG  PD
Sbjct: 311 MVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPD 354



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 2/212 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           N +  L++     G  D    V++ M++ G+ P+      L+ +  R  +    K    E
Sbjct: 110 NTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNE 169

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +   G+  +   Y +LL    +    ++ + ++RE  E      V  +N L+     +G 
Sbjct: 170 VHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGE 229

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE-MLEAGFEPNLFVL 300
            D+AFE F++M  +  C PD  +++++I       ++S+   +  E ML  G  P++   
Sbjct: 230 IDKAFEFFQNM-GNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITY 288

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           TS+I  Y K           + +   GI P+D
Sbjct: 289 TSIISGYCKLGDMKAASELFDEMVSSGIKPND 320



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 3/155 (1%)

Query: 179 YKEMTDNGLSPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           + E +   LS N  +NTY  L+R   +    +    V+  M+  G+    ++   L++  
Sbjct: 95  FFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSY 154

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           A +G  D A     ++      +   + +++++ +   +  V EA  +F E LE  F P+
Sbjct: 155 ARMGKLDSAKNFLNEVHCY-GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPD 213

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++    LI+   +    D        +   G  PD
Sbjct: 214 VYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPD 248


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 109/225 (48%), Gaps = 3/225 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ + + Y  A      +  +E+M+  G++P +  +N LLD + +++   + + ++ +M 
Sbjct: 182 FALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMK 241

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
           D    P+  +Y  LL  +G+ +       VYREMK++G +     Y  L+ A C    Y 
Sbjct: 242 DRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRY- 300

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           D A E+F  M++++ C P    + ++I       +++EA   F     +GF P      +
Sbjct: 301 DAAVELFHKMEANK-CMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNA 359

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           ++  Y ++ R DD  R ++ + + G+ P  R    +L+ + +  +
Sbjct: 360 VVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARR 404



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 118/268 (44%), Gaps = 35/268 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++ +VE A  ++D+ ++ K+R D  +++ L++ +G   N      VY EMK  G +P+ +
Sbjct: 226 KSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAV 285

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN-------------------------------- 185
           TY  L++   +A+R      ++ +M  N                                
Sbjct: 286 TYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERS 345

Query: 186 ---GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G +P   TY +++ +Y ++   +D   +  EM++ G+      Y+ +L        T
Sbjct: 346 KASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRT 405

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EA+ +F+ M S   C+P   T+  ++ +     +V  A  +++EM   G  P + + ++
Sbjct: 406 KEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFST 465

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
           LI       + D+  +  + + ++GI P
Sbjct: 466 LINSLCYENKLDEACKYFHEMLDMGIRP 493



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 2/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   + A  L+ +    K    P+ + TLI   G+       L  +E  KA G  P   
Sbjct: 296 KARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAP 355

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++ +  ++ R      I  EM   G+ P   TY  +L    +AR  ++   V++ M
Sbjct: 356 TYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGM 415

Query: 218 K-EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             E G + SV+ Y  ++ M  +    D A  ++++MK+ +   P    FS++I       
Sbjct: 416 SSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKA-KGVLPGMHMFSTLINSLCYEN 474

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           K+ EA   F+EML+ G  P   + ++L Q      + D V+    +L ++  T
Sbjct: 475 KLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQDMVLILAQKLDKIRTT 527



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 113/236 (47%), Gaps = 6/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDP--NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RA  V+ A   +++   EK+ + P  + F+ L+     + + +    V+++MK    +P+
Sbjct: 191 RARKVKEAVETFEKM--EKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPD 248

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + +Y  LL+  G+ +   ++  +Y+EM D G  P+  TY  L+ A+ +AR  +  + ++ 
Sbjct: 249 IKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFH 308

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M+      +  +Y TL+          EA + FE  K+S    P++ T+++++      
Sbjct: 309 KMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKAS-GFTPEAPTYNAVVGSYCQS 367

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL-PELGITP 330
            ++ +A  + +EM + G  P       ++    KA+RT +  R    +  E G  P
Sbjct: 368 MRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEP 423


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 141/296 (47%), Gaps = 2/296 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G+  +A  L  +      + D   +ST+I      G  D  +++++EM+  G+K +++
Sbjct: 182 KSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLV 241

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN+L+  + +A +      + K+MT   + PN  T+  L+  + +    ++   +Y+EM
Sbjct: 242 TYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEM 301

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG+  +   YN+L+          EA  +  D+    NC PD  TF+S+I       +
Sbjct: 302 ITKGISPNTITYNSLMDGYCMQNRLSEANNML-DLMVRNNCSPDIVTFTSLIKGYCKVKR 360

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           V E   +F ++ + G   N    + L+Q + ++ + +        +  LG+ PD    G 
Sbjct: 361 VDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGI 420

Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           LL+ +    K E+  ++ E ++KS   L  V+  ++ E   +G   ++A  LF S+
Sbjct: 421 LLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSL 476



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 110/230 (47%), Gaps = 12/230 (5%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +I PN   F+ LI ++   G       +Y+EM   G+ PN ITYN+L+D      R  + 
Sbjct: 270 KIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEA 329

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
             +   M  N  SP+  T+ SL++ Y + +  ++ + ++R++ ++G+  +   Y+ L+  
Sbjct: 330 NNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQG 389

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  + A E+F++M  S    PD  T+  ++      GK+ +A  +F ++ ++    
Sbjct: 390 FCQSGKLEIAEELFQEM-VSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNL 448

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
           ++ + T +I+   K  + +D       LP  G+ P         NVMT T
Sbjct: 449 DIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKP---------NVMTYT 489



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 36/225 (16%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS----- 196
           +V  ++  +G +P+  T+N L++ +    +  +   +   M +NG  PN  TY S     
Sbjct: 121 SVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGI 180

Query: 197 -----------LLRAYGRARYGEDT-------------------LSVYREMKEKGMQLSV 226
                      LLR         D                    +S+++EM+ KG++ S+
Sbjct: 181 CKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSL 240

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             YN+L+      G  ++  ++ +DM +S    P+  TF+ +I +    GK+ EA  ++ 
Sbjct: 241 VTYNSLVGGLCKAGKWNDGVQLLKDM-TSRKIIPNVITFNVLIDVFVKEGKLQEANELYK 299

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EM+  G  PN     SL+  Y    R  +    L+ +     +PD
Sbjct: 300 EMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPD 344



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 1/224 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           FS       +   F+  L+  ++M+  G+  N+ T N +++   R  +     ++  ++ 
Sbjct: 68  FSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVM 127

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G  P+  T+ +L+          + + +   M E G Q +V  YN+++      G T 
Sbjct: 128 KLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTS 187

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A ++   M    N + D +T+S++I      G +  A ++F EM   G + +L    SL
Sbjct: 188 LALDLLRKM-DERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSL 246

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           +    KA + +D V+ L  +    I P+      L++V  +  K
Sbjct: 247 VGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGK 290



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 36/208 (17%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +S L++ +  +G  +    +++EM ++GV P+++TY  LLD                 + 
Sbjct: 383 YSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDG----------------LC 426

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           DNG                     E  L ++ ++++  M L + +Y  ++      G  +
Sbjct: 427 DNG-------------------KLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVE 467

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A+ +F  +   +  +P+  T++ MI+    +G +SEA  +  +M E G EPN     +L
Sbjct: 468 DAWNLFCSL-PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTL 526

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I+ + +        + +  +   G + D
Sbjct: 527 IRAHLRDGDLTASAKLIEEMKSCGFSAD 554



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 60/122 (49%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  +++  +  K  +D   ++ +I+     G  +   N++  +   GVKPN++TY
Sbjct: 429 GKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 488

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             ++  + +     +   + ++M ++G  PN  TY +L+RA+ R      +  +  EMK 
Sbjct: 489 TVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 548

Query: 220 KG 221
            G
Sbjct: 549 CG 550


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 1/213 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ A  L+D   +   + +   F+ LI  +G  GN    + +YE+M  +G  P+++
Sbjct: 297 KLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVV 356

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+ +L+D   R     Q   +++EM    LSPN  TYA L+ A  +     +  +  R +
Sbjct: 357 TFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHL 416

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K   +     +YN ++      G  DEA  I  +M+  + C+PD  TF+ +I     +G+
Sbjct: 417 KSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKK-CRPDKITFTILIIGNCMKGR 475

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           + EA + F +M+E    P+   + SLI C  KA
Sbjct: 476 MVEAISTFYKMIEINCVPDEITINSLISCLLKA 508



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++D  R++    D +    L+  Y   G  D   N   E+   G+K +   YNNLL+ + 
Sbjct: 131 VFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLV 190

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     +   +++E  +    P+  ++  L+R   R    +     ++ M   G    + 
Sbjct: 191 KQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIV 250

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YNTL+     V    +  ++ ++    +   PD  T++S+I+     G +  A  +F+E
Sbjct: 251 SYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDE 310

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M+ +G +PN F    LI  +GK       +    ++  LG  PD
Sbjct: 311 MVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPD 354



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 2/212 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           N +  L++     G  D    V++ M++ G+ P+      L+ +  R  +    K    E
Sbjct: 110 NTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNE 169

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +   G+  +   Y +LL    +    ++ + ++RE  E      V  +N L+     +G 
Sbjct: 170 VHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGE 229

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE-MLEAGFEPNLFVL 300
            D+AFE F++M  +  C PD  +++++I       ++S+   +  E ML  G  P++   
Sbjct: 230 IDKAFEFFQNM-GNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITY 288

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           TS+I  Y K           + +   GI P+D
Sbjct: 289 TSIISGYCKLGDMKAASELFDEMVSSGIKPND 320



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 3/155 (1%)

Query: 179 YKEMTDNGLSPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           + E +   LS N  +NTY  L+R   +    +    V+  M+  G+    ++   L++  
Sbjct: 95  FFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSY 154

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           A +G  D A     ++      +   + +++++ +   +  V EA  +F E LE  F P+
Sbjct: 155 ARMGKLDSAKNFLNEVHCY-GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPD 213

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++    LI+   +    D        +   G  PD
Sbjct: 214 VYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPD 248


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 2/218 (0%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           + R+ PN   F+ L+  + + G     L     M+  G+ P+ +TYN LL+   R     
Sbjct: 201 ELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLG 260

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           + + +   M  +G++P   TY +L+ A+ R  + +    V   M   G +  +  YN L 
Sbjct: 261 EARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLA 320

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G  DEAF + ++M+      PD  T+++++  C      S+A  +  EM + G 
Sbjct: 321 VGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGV 380

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +P L     +++   K  + ++ +  L ++ E G+ PD
Sbjct: 381 KPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPD 418



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 156/368 (42%), Gaps = 47/368 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +  A  L  R + +        ++TL+  +   G       V E M A G +P++ 
Sbjct: 255 RKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLR 314

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN L   + +A +  +   +  EM     + P+  TY +L+ A  + R   D L +  E
Sbjct: 315 TYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++KG++ ++  +N ++      G  +EA    E + + E   PD  T++++I      G
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKI-AEEGLAPDVITYNTLIDAYCKAG 433

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V++A  + +EM+  G + + F L +++    K +R +D    L+  P+ G  PD+   G
Sbjct: 434 NVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYG 493

Query: 337 CLL-------------------------------NVMT------QTPKEELGKLVECVEK 359
            ++                               N +       +  KE + KL E VEK
Sbjct: 494 TVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEK 553

Query: 360 S----NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID-LCVNLNLL 414
                 +    ++    +E D+E  F+     + NS   DV    CN L++ LC++   L
Sbjct: 554 GLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDV--VTCNTLMNGLCLH-GKL 610

Query: 415 ENACKLLE 422
           + A KL E
Sbjct: 611 DKALKLFE 618



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 98/208 (47%), Gaps = 1/208 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++ T++  Y    N +  L ++++M    + P++ TYN L+  + R +R  +     
Sbjct: 488 DEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKL 547

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            E+ + GL P+  TY  ++ AY +    E+    + +M E   +  V   NTL+      
Sbjct: 548 NELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLH 607

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D+A ++FE     +  + D  T++++I      G V  A   F++M   G +P+ F 
Sbjct: 608 GKLDKALKLFESW-VEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFT 666

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELG 327
              ++    +A R+++    L++L + G
Sbjct: 667 YNVVLSALSEAGRSEEAHNMLHKLADSG 694



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 4/184 (2%)

Query: 151 GVKPNMITYNNLLDTMGRAKR--PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
           GV+P++   N +L  + R+    P     +++ + +  L PN  T+  L+  +       
Sbjct: 166 GVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLA 225

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           D L+    M+  G+      YNTLL      G   EA  +   MK  +   P   T++++
Sbjct: 226 DALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMK-RDGIAPTQPTYNTL 284

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           ++  +  G + +A  +   M   GFEP+L     L     +A + D+  R  + +  L  
Sbjct: 285 VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLST 344

Query: 329 T-PD 331
             PD
Sbjct: 345 ALPD 348


>gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa]
 gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 114/246 (46%), Gaps = 2/246 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ L+ +  T+ N  G   V +  KA+G+K +   Y  L+ T  ++ +   +  ++ EM 
Sbjct: 45  FNMLMSVCATSQNSAGAFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 104

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G+ PN +TY +L+    RA         Y  M+ K ++    ++N L+  C   G  D
Sbjct: 105 NAGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 164

Query: 244 EAFEIFEDMKS-SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            AF++  +M   ++   PD  T  ++I  C+  G+V  A+ ++N + +   +    V T 
Sbjct: 165 RAFDVLAEMTGEAQPIDPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTI 224

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG-KLVECVEKSN 361
            I    +    +   +  + +   G+ PD+ F   L++V     K +   ++++  +   
Sbjct: 225 AINSCSQIGDWEFACKVFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKG 284

Query: 362 SKLGYV 367
           ++LG +
Sbjct: 285 AQLGII 290



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 9/247 (3%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N   AF +   A+    + D   ++TLI     +G  D    V+ EM   GV+PN+ TY 
Sbjct: 57  NSAGAFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYG 116

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+D   RA +  +    Y  M    + P+   + +L+ A G++   +    V  EM  +
Sbjct: 117 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGE 176

Query: 221 GMQLS---VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              +    +T+   L+  C + G  D A E++ +M    N +     ++  I  CS  G 
Sbjct: 177 AQPIDPDHITV-GALIKACTNAGQVDRAQEVY-NMVHKYNIKGTPEVYTIAINSCSQIGD 234

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD----VVRALNRLPELGITPDDR 333
              A  +F++M   G  P+   L++LI   G A + D     +  A  +  +LGI P   
Sbjct: 235 WEFACKVFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSS 294

Query: 334 FCGCLLN 340
             G   N
Sbjct: 295 LMGACCN 301



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 41/266 (15%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--KAIGVKP 154
            RAG V  AFG Y   R++  + D   F+ LI   G +G  D   +V  EM  +A  + P
Sbjct: 123 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPIDP 182

Query: 155 NMITYNNLLDT---MGRAKRPWQVKT--------------------------------IY 179
           + IT   L+      G+  R  +V                                  ++
Sbjct: 183 DHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACKVF 242

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +MT  G+ P+    ++L+   G A   +    + +E K KG QL +  Y++L+  C + 
Sbjct: 243 DDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACCNA 302

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               +  E++ED+KS +  +P   T +++IT      ++ +A  + +EM   G  PN   
Sbjct: 303 KNWQKGLELYEDIKSMK-IKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPNTIT 361

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPE 325
            + L      ++R DD+   L  L +
Sbjct: 362 YSIL---SVASERKDDLEAGLMLLSQ 384



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
           +P  +T+  L+     ++       V +  K  G++    LY TL++ CA  G  D  FE
Sbjct: 39  NPTLSTFNMLMSVCATSQNSAGAFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFE 98

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           +F +M ++   +P+  T+ ++I  C+  G+V++A   +  M     +P+  V  +LI   
Sbjct: 99  VFHEMVNA-GVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 157

Query: 308 GKAQRTDDVVRALNRLPELG-----ITPDDRFCGCLLNVMT 343
           G++   D   RA + L E+      I PD    G L+   T
Sbjct: 158 GQSGAVD---RAFDVLAEMTGEAQPIDPDHITVGALIKACT 195



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 92/210 (43%), Gaps = 3/210 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G V+  F ++    N     + + +  LI     AG        Y  M++  VKP+ 
Sbjct: 88  AKSGKVDAMFEVFHEMVNAGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 147

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + +N L+   G++    +   +  EMT     + P+  T  +L++A   A   +    VY
Sbjct: 148 VVFNALITACGQSGAVDRAFDVLAEMTGEAQPIDPDHITVGALIKACTNAGQVDRAQEVY 207

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             + +  ++ +  +Y   +  C+ +G  + A ++F+DM + +   PD    S++I +   
Sbjct: 208 NMVHKYNIKGTPEVYTIAINSCSQIGDWEFACKVFDDM-TRKGVVPDEMFLSALIDVAGH 266

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
            GK+  A  +  E    G +  +   +SL+
Sbjct: 267 AGKMDAAFEIIQEAKAKGAQLGIIPYSSLM 296



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 68/139 (48%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            AG ++ AF +   A+ +  ++    +S+L+     A N+   L +YE++K++ +KP + 
Sbjct: 266 HAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACCNAKNWQKGLELYEDIKSMKIKPTVA 325

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N L+  +    +  +   +  EM   GL PN  TY+ L  A  R    E  L +  + 
Sbjct: 326 TMNALITALCDGDQLPKALEVLSEMKAWGLRPNTITYSILSVASERKDDLEAGLMLLSQA 385

Query: 218 KEKGMQLSVTLYNTLLAMC 236
           K+  +  ++ +   +++MC
Sbjct: 386 KKDCVAPTLIMSKCIISMC 404


>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 915

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 1/236 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +RAG    A  L +       + D  +F+  ++ +  AG+     ++ +EMK+ G+  ++
Sbjct: 444 SRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDV 503

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ++Y   +    +A        + KEM + G+ PN   Y S L A GRA   +    + R+
Sbjct: 504 VSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRK 563

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G+    T Y   +  C+  G  D+A E  E M S E   P++ T++  +  C   G
Sbjct: 564 MGETGVVRDATSYTGAIVACSRNGDGDKALEWLETM-SKEGIAPEAITYNYAMAACGRSG 622

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
              +AE + NEM   G  PN    ++ +   GKA R  DV+  L  +   G+  D+
Sbjct: 623 NDRQAEWLLNEMRGQGVTPNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADE 678



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 1/184 (0%)

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
           KA GVKPN +T+N+ +  + RA R  + K +  EM++ GL P+  ++ + ++ +  A   
Sbjct: 425 KAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDP 484

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
            +T S+  EMK +G+ + V  Y T ++ CA  G    A ++ ++M+ +   +P++  ++S
Sbjct: 485 RNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEA-GVEPNTVVYNS 543

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            +  C   GK   AE +  +M E G   +    T  I    +    D  +  L  + + G
Sbjct: 544 ALDACGRAGKPKVAEKLLRKMGETGVVRDATSYTGAIVACSRNGDGDKALEWLETMSKEG 603

Query: 328 ITPD 331
           I P+
Sbjct: 604 IAPE 607



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 35/228 (15%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA-----KRP 172
           R D  A++  I   G AG     + +  EM    VKP+++ + + +  +G       +  
Sbjct: 254 RPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRST 313

Query: 173 WQVKT------------------------------IYKEMTDNGLSPNWNTYASLLRAYG 202
           W  K                               + +EM   G SPN   YAS + A  
Sbjct: 314 WGRKGADEGGEGGDKPIASAVADPKPTRAHEKALELIQEMRREGPSPNSQCYASAITACA 373

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           RA      + +  +M+E G+  +  + N  +  C      DEA ++   M+ +   +P++
Sbjct: 374 RAHDPRSAMRLLADMREDGVPPNDVVLNAAVDACGKGDAPDEALKLLRGMEKAYGVKPNT 433

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            TF+S I+  S  G+  EA+A+ NEM E G +P+ F   + +Q +  A
Sbjct: 434 VTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAA 481



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG  ++A  L  +        D  +++  I      G+ D  L   E M   G+ P  I
Sbjct: 550 RAGKPKVAEKLLRKMGETGVVRDATSYTGAIVACSRNGDGDKALEWLETMSKEGIAPEAI 609

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN  +   GR+    Q + +  EM   G++PN  +Y++ + A G+A    D LS+  EM
Sbjct: 610 TYNYAMAACGRSGNDRQAEWLLNEMRGQGVTPNRISYSAAMFALGKAGRLPDVLSLLEEM 669

Query: 218 KEKGMQLSVTLYNTLL---AMCADVGYTDEAFEIFEDMKS 254
             +G++     Y+  +   ++  D+G    A ++F +M++
Sbjct: 670 HREGVEADEVTYHIAVDAASIARDLGC---AMDLFREMRA 706



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%)

Query: 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
           G +GN      +  EM+  GV PN I+Y+  +  +G+A R   V ++ +EM   G+  + 
Sbjct: 619 GRSGNDRQAEWLLNEMRGQGVTPNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADE 678

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
            TY   + A   AR     + ++REM+ +G+ ++
Sbjct: 679 VTYHIAVDAASIARDLGCAMDLFREMRARGLPVT 712


>gi|18491213|gb|AAL69509.1| unknown protein [Arabidopsis thaliana]
          Length = 320

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 111/218 (50%), Gaps = 4/218 (1%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
           +++ +   G +  C   +++M   GV  ++ +Y+  +D M ++ +PW+   +YKEM    
Sbjct: 67  ILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRR 126

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
           +  +   Y +++RA G ++  E  + V+REM+E+G + +V  +NT++ +  + G   +A+
Sbjct: 127 MKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAY 186

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
            + ++M     CQPDS T+  + +      K SE  ++F  M+ +G  P +     L++ 
Sbjct: 187 RMLDEM-PKRGCQPDSITYMCLFSRLE---KPSEILSLFGRMIRSGVRPKMDTYVMLMRK 242

Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           + +      V+     + E G TPD      +++ + Q
Sbjct: 243 FERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQ 280



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 4/199 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G    A  LY   ++ + ++D  A++T+I+  G +   +  + V+ EM+  G +PN+ 
Sbjct: 108 KSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVA 167

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N ++  +    R      +  EM   G  P+  TY  L   + R     + LS++  M
Sbjct: 168 THNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCL---FSRLEKPSEILSLFGRM 224

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++  +  Y  L+      G+      +++ MK S +  PDS  ++++I     +G 
Sbjct: 225 IRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGD-TPDSAAYNAVIDALIQKGM 283

Query: 278 VSEAEAMFNEMLEAGFEPN 296
           +  A     EM+E G  P 
Sbjct: 284 LDMAREYEEEMIERGLSPR 302


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 110/230 (47%), Gaps = 1/230 (0%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            +++A  L+   +      D   ++ ++   G +   +  L V +EM   G +   +TYN 
Sbjct: 782  IDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNT 841

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            ++  + ++KR  Q   +Y  +   G SP   TY  LL    ++    D  +++ EM E G
Sbjct: 842  IISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYG 901

Query: 222  MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             + + T+YN LL      G T+   ++FE M   +   PD  +++ +I      G++++ 
Sbjct: 902  CEPNCTIYNILLNGHRIAGNTENVCQLFEKM-VEQGINPDIKSYTILIDTLCTAGRLNDG 960

Query: 282  EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               F ++ E G EP+L V   LI   GK++R ++ V   N + + GI P+
Sbjct: 961  LCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPN 1010



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 136/298 (45%), Gaps = 7/298 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G++   F   D  + +  + +   F+T+    G  G           M+  G+  N  
Sbjct: 116 RVGDMAQVF---DLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAY 172

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + ++    +   +YK M ++G+SP+  TY+ L+ A+G+ R  +  L +  EM
Sbjct: 173 TYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEM 232

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G++ +V  Y   + +       DEA+ I   M+ S  C+PD  T + +I +    G+
Sbjct: 233 EARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDS-GCKPDVVTHTVIIQVLCDAGR 291

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +S+A+A+F +M  +  +P+     +L+   G +  +  VV   N +   G   +      
Sbjct: 292 LSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTA 351

Query: 338 LLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
           +++ + Q  +  E L    E  EK  S   Y    L+    ++ D    A ELFN ++
Sbjct: 352 VVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLI-SGFLKADMFDRALELFNHMN 408



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 123/256 (48%), Gaps = 8/256 (3%)

Query: 143  VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
            ++ + K +GV     +YN+L+  +         + ++ EM   G  P+  TY  +L A G
Sbjct: 753  LFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMG 812

Query: 203  RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            ++   E+ L V +EM  KG + +   YNT+++        ++A +++ ++ S E   P  
Sbjct: 813  KSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMS-EGFSPTP 871

Query: 263  WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
             T+  ++      GK+ +AE +FNEMLE G EPN  +   L+  +  A  T++V +   +
Sbjct: 872  CTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEK 931

Query: 323  LPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK 382
            + E GI PD +    L++ +    +   G    C  +   +LG    L++    I+G  K
Sbjct: 932  MVEQGINPDIKSYTILIDTLCTAGRLNDGL---CYFRQLHELGLEPDLIVYNLLIDGLGK 988

Query: 383  ----KEATELFNSISK 394
                +EA  LFN + K
Sbjct: 989  SERIEEAVSLFNEMKK 1004



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 176/417 (42%), Gaps = 25/417 (5%)

Query: 121 PNAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN ++ +  I  YG +G     +  YE MK+ G+ P++   N +L ++  + R    K +
Sbjct: 414 PNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRV 473

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E+   G+SP+  TY  +++   +A   ++ ++ + +M E G    V   N+L+     
Sbjct: 474 FYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYK 533

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  +EA+++F  +K  +  +P + T++++++     GKV E   +  EM    + PNL 
Sbjct: 534 GGKGNEAWQLFHKLKEMK-IEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLI 592

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
              +++ C  K    +  +  L  + E G  PD      ++  + +  + E    + C  
Sbjct: 593 TYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQM 652

Query: 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENAC 418
           K      Y     +    ++    KEA    +++ + + KA CN  +D     +L+E   
Sbjct: 653 KKILAPDYATLCTILPSFVKNGLMKEA---LHTVKEYILKAGCN--VDKSSFHSLMEGIL 707

Query: 419 KLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLL 478
           K   +  ++E   +I SR        L  L         H+  +   KALE+ + F    
Sbjct: 708 KKAGVEKSIEFAENIASRGILLNDFFLCPL-------IRHLCKH--KKALEAHQLFNKFK 758

Query: 479 GINTGHGKHKYS-------DKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKS 528
           G+        Y+       D+ L  + E    E+       PD+  + L  +A  KS
Sbjct: 759 GLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKR-LGCGPDEFTYNLILDAMGKS 814



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 1/235 (0%)

Query: 97   TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
             ++  +E A  LY    +E +   P  +  L+     +G      N++ EM   G +PN 
Sbjct: 847  VKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNC 906

Query: 157  ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
              YN LL+    A     V  ++++M + G++P+  +Y  L+     A    D L  +R+
Sbjct: 907  TIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQ 966

Query: 217  MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + E G++  + +YN L+         +EA  +F +MK  +   P+ +T++S+I      G
Sbjct: 967  LHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMK-KKGIIPNLYTYNSLILHLGKAG 1025

Query: 277  KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            K +EA  M+ E+L  G++P++F   +LI+ Y  +  TD+   A  ++   G  P+
Sbjct: 1026 KAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPN 1080



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 1/170 (0%)

Query: 99   AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            AGN E    L+++   +    D  +++ LI    TAG  +  L  + ++  +G++P++I 
Sbjct: 919  AGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIV 978

Query: 159  YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            YN L+D +G+++R  +  +++ EM   G+ PN  TY SL+   G+A    +   +Y E+ 
Sbjct: 979  YNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELL 1038

Query: 219  EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
             KG + SV  YN L+   +  G TD A+  +  M     CQP+S T+  +
Sbjct: 1039 RKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVG-GCQPNSSTYMQL 1087



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 113/268 (42%), Gaps = 34/268 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A   + A+ +  +  +   + D    + +I++   AG       V+ +MKA   KP+ +
Sbjct: 253 QAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRV 312

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD  G +     V  ++  M  +G + N  +Y +++ A  +    ++ L+V+ EM
Sbjct: 313 TYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEM 372

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS----------------------- 254
           KEKGM      YN+L++        D A E+F  M +                       
Sbjct: 373 KEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQS 432

Query: 255 -----------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                      S+   PD    ++++   +  G++  A+ +F E+   G  P+    T +
Sbjct: 433 LKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMM 492

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I+C  KA + D+ +   + + E G  PD
Sbjct: 493 IKCCSKASKADEAMNFFSDMVESGCVPD 520



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 112/238 (47%), Gaps = 2/238 (0%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           +Y  ++G    A   Y+  +++    D  A + ++     +G       V+ E+KA+GV 
Sbjct: 424 NYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVS 483

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ ITY  ++    +A +  +    + +M ++G  P+     SL+    +   G +   +
Sbjct: 484 PDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQL 543

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + ++KE  ++ +   YNTLL+     G   E  ++ E+M  +    P+  T+++++   S
Sbjct: 544 FHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIY-PPNLITYNTVLDCLS 602

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G+V+ A  M   M E G  P+L    +++    K +R ++  R   ++ ++ + PD
Sbjct: 603 KNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKI-LAPD 659



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 23/244 (9%)

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           L+R   + +   +   ++ + K  G+ L    YN+L+    D    D A ++F +MK   
Sbjct: 737 LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRL- 795

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
            C PD +T++ ++       +V E   +  EM   G+E       ++I    K++R +  
Sbjct: 796 GCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQA 855

Query: 317 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGY-------VVK 369
           +     L   G +P     G LL+ + ++     GK+V+     N  L Y       +  
Sbjct: 856 IDLYYNLMSEGFSPTPCTYGPLLDGLLKS-----GKMVDAENLFNEMLEYGCEPNCTIYN 910

Query: 370 LLLEEQDIEGDFKKEATELF-----NSISKDVKKAYCNCLIDLCVNLNLLENAC---KLL 421
           +LL    I G+  +   +LF       I+ D+ K+Y   +  LC    L +  C   +L 
Sbjct: 911 ILLNGHRIAGN-TENVCQLFEKMVEQGINPDI-KSYTILIDTLCTAGRLNDGLCYFRQLH 968

Query: 422 ELGL 425
           ELGL
Sbjct: 969 ELGL 972


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  LY +  +E +   P  +  L+      GN +    +++EM   G +PN   YN LL+
Sbjct: 158 AINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLN 217

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
               A    +V  +++ M + G++P+  +Y  ++          D LS ++++ + G++ 
Sbjct: 218 GYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEP 277

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            +  YN L+      G  +EA  ++ DM+  +   P+ +T++S+I      GK +EA  M
Sbjct: 278 DLITYNLLIHGLGKSGRLEEALSLYNDMEK-KGIAPNLYTYNSLILYLGKAGKAAEAGKM 336

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + E+L  G++PN+F   +LI+ Y  +   ++   A  R+   G  P+
Sbjct: 337 YEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPN 383



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 3/214 (1%)

Query: 120 DPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           DP+ F+   ++   G +   +  L + EEM   G K   +TYN ++  + ++K   +   
Sbjct: 101 DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAIN 160

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +Y ++   G SP   TY  LL    +    ED  +++ EM E G + +  +YN LL    
Sbjct: 161 LYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYR 220

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G T++  E+FE M   +   PD  +++ +I      G++++  + F ++ + G EP+L
Sbjct: 221 IAGDTEKVCELFESM-VEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDL 279

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                LI   GK+ R ++ +   N + + GI P+
Sbjct: 280 ITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPN 313



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 105/199 (52%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+E A  L+D         +   ++ L+  Y  AG+ +    ++E M   G+ P++ 
Sbjct: 186 KDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIK 245

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  ++DT+    R     + +K++TD GL P+  TY  L+   G++   E+ LS+Y +M
Sbjct: 246 SYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 305

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++KG+  ++  YN+L+      G   EA +++E++  ++  +P+ +T++++I   S  G 
Sbjct: 306 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELL-AKGWKPNVFTYNALIRGYSVSGS 364

Query: 278 VSEAEAMFNEMLEAGFEPN 296
              A A +  M+  G  PN
Sbjct: 365 PENAFAAYGRMIVGGCRPN 383



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 3/231 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +E    + +   N+ ++     ++T+I     +   D  +N+Y ++ + G  P   TY  
Sbjct: 120 IEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGP 179

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LLD + +       + ++ EM + G  PN   Y  LL  Y  A   E    ++  M E+G
Sbjct: 180 LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 239

Query: 222 MQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           M   +  Y  ++  +CAD G  ++    F+ + +    +PD  T++ +I      G++ E
Sbjct: 240 MNPDIKSYTVVIDTLCAD-GRLNDGLSYFKQL-TDMGLEPDLITYNLLIHGLGKSGRLEE 297

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           A +++N+M + G  PNL+   SLI   GKA +  +  +    L   G  P+
Sbjct: 298 ALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPN 348



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 88/170 (51%), Gaps = 1/170 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG+ E    L++    +    D  +++ +I      G  +  L+ ++++  +G++P++IT
Sbjct: 222 AGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLIT 281

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+  +G++ R  +  ++Y +M   G++PN  TY SL+   G+A    +   +Y E+ 
Sbjct: 282 YNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELL 341

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            KG + +V  YN L+   +  G  + AF  +  M     C+P+S T+  +
Sbjct: 342 AKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVG-GCRPNSSTYMQL 390



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           ++G +E A  LY+    EK  I PN   +++LI   G AG       +YEE+ A G KPN
Sbjct: 291 KSGRLEEALSLYNDM--EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPN 348

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           + TYN L+     +  P      Y  M   G  PN +TY  L
Sbjct: 349 VFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 390



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 16/206 (7%)

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           ++ +  G+ L    YN L+    D    D A E+F +MK    C PD +T+  ++     
Sbjct: 58  KKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRL-GCDPDEFTYHLILDAMGK 116

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             ++ +   +  EM   G++       ++I    K++  D+ +    +L   G +P    
Sbjct: 117 SMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCT 176

Query: 335 CGCLLNVMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389
            G LL+ + +    E       +++EC  + N     +  +LL    I GD +K   ELF
Sbjct: 177 YGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCA---IYNILLNGYRIAGDTEK-VCELF 232

Query: 390 NSISK-----DVKKAYCNCLIDLCVN 410
            S+ +     D+ K+Y   +  LC +
Sbjct: 233 ESMVEQGMNPDI-KSYTVVIDTLCAD 257


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 2/228 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+T+I  Y   G  +  L +   M+ +G++ ++ TYN L   + R  R    K +   M 
Sbjct: 326 FNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMA 385

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           + G++PN+ +Y +L+  + +     +   ++R+M+ KG + SV  YN ++      G   
Sbjct: 386 EKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIR 445

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA E F+     +   PD +T++ ++      GKV  A  +F EM   G +PN+   T+L
Sbjct: 446 EA-ERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTAL 504

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-TQTPKEEL 350
           +    K  R+++  +  + +   G+TPDD     L+  + T + K+ L
Sbjct: 505 VSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSLHTDSRKDPL 552



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 120/281 (42%), Gaps = 14/281 (4%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           + P + S ++  +  +G+ D    + +E+   GV  N   YN+LLD+  R +    V  +
Sbjct: 146 VTPLSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGL 205

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            KEM + G+ P   TY  L+    RA       +VY EMK K +   V  Y+ ++     
Sbjct: 206 LKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCR 265

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G    A E+F++       +P+  T+ ++I      G++  AE +  +M   G   N  
Sbjct: 266 GGNVRRASEVFDEC-VGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQI 324

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGI-----TPDDRFCG-CLLNVMTQTPKEELGK 352
           V  ++I  Y +    +  +     + ++GI     T +   CG C +N M     E+  K
Sbjct: 325 VFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRM-----EDAKK 379

Query: 353 LVECVEKSNSKLGYV-VKLLLEEQDIEGDFKKEATELFNSI 392
           L+  + +      YV    L+     EGD   EA  LF  +
Sbjct: 380 LLHIMAEKGVAPNYVSYTTLISIHAKEGDM-VEARRLFRDM 419



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  + P+   ++ L+  +   G  D  L ++EEMK  G KPN++ Y  L+  + +  R 
Sbjct: 455 EKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRS 514

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLL 198
            +   +Y +M   GL+P+   Y+ L+
Sbjct: 515 EEAFQLYDDMLAAGLTPDDTLYSVLV 540


>gi|222618027|gb|EEE54159.1| hypothetical protein OsJ_00969 [Oryza sativa Japonica Group]
          Length = 610

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 12/220 (5%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ L+K +  AG  +    V   M+A G  P+++TYN L     +    W+ +
Sbjct: 221 VRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAE 280

Query: 177 TIYKEMTDN-GLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            +  EM    GL  +  T+  ++  Y R  R GE  L   R+MK+ G+  +V ++NTLL 
Sbjct: 281 ELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGE-ALRCVRQMKDSGVLPNVIVFNTLLK 339

Query: 235 M---CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
                 D+   D+   + E        +PD  T+S  +   S  G +++   +F++M+EA
Sbjct: 340 GFLDANDMAAVDDVLGLMEQF----GIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEA 395

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G EP+  V + L + Y +AQ+ +     L ++  LG+ P+
Sbjct: 396 GIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPN 435



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 13/248 (5%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R D   F+ LI     A       N +  M   G +P   T+N L+   G A RP + + 
Sbjct: 146 RPDSIFFNALINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQR 205

Query: 178 IYKEMTDNG------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
           ++  M   G      + PN  TY  L++A+  A   E+   V   M+  G    V  YNT
Sbjct: 206 VFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNT 265

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLE 290
           L +  A    T  A E+  +M      +    T+  +I    CR G++ EA     +M +
Sbjct: 266 LASAYAKNDETWRAEELVVEMAQQAGLRTSERTW-GIIVGGYCREGRLGEALRCVRQMKD 324

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 350
           +G  PN+ V  +L++ +  A     V   L  + + GI PD       LN ++      +
Sbjct: 325 SGVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALS-----SM 379

Query: 351 GKLVECVE 358
           G + +C++
Sbjct: 380 GHMAKCMK 387



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +I     +  M  A+RP Q  + ++ + D+G  P+  TY +LL A    R  +    +  
Sbjct: 79  VIARTRQMRAMIDARRPHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLA 138

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           E+++ G++     +N L+    +     EA   F  M  S  C+P + TF+++I      
Sbjct: 139 EVEDAGLRPDSIFFNALINALVEARRMGEATNTFLRMGHS-GCRPTASTFNTLIKGYGIA 197

Query: 276 GKVSEAEAMFNEM------LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           G+  E++ +F+ M       EA   PNL     L++ +  A R ++  R + R+   G  
Sbjct: 198 GRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGAD 257

Query: 330 PD 331
           PD
Sbjct: 258 PD 259



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 29/177 (16%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TL+K +  A +     +V   M+  G+KP+++TY++ L+ +       +   +
Sbjct: 329 PNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKV 388

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M + G+ P+   Y+ L + Y RA+  E    + R+M   G++ +V  + T+++    
Sbjct: 389 FDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVIS---- 444

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
                                   WTF ++I   S   +  +AE +   M +AG  P
Sbjct: 445 -----------------------GWTFETLIWGYSELKQPWKAEEVLQMMQDAGVRP 478



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 97/218 (44%), Gaps = 14/218 (6%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G +P+++TY  LL  +   +    +  +  E+ D GL P+   + +L+ A   AR   + 
Sbjct: 109 GHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALVEARRMGEA 168

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-----KSSENCQPDSWTF 265
            + +  M   G + + + +NTL+      G  +E+  +F+ M           +P+  T+
Sbjct: 169 TNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTY 228

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           + ++      G++ EA  +   M  +G +P++    +L   Y K    D+  RA   + E
Sbjct: 229 NILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAK---NDETWRAEELVVE 285

Query: 326 L----GITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
           +    G+   +R  G ++    +  +  LG+ + CV +
Sbjct: 286 MAQQAGLRTSERTWGIIVGGYCREGR--LGEALRCVRQ 321



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G++     ++D+        DP  +S L K Y  A   +    +  +M  +GV+PN++T+
Sbjct: 380 GHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTF 439

Query: 160 NNLL-----DTM----GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
             ++     +T+       K+PW+ + + + M D G+ P   TY  +  A+
Sbjct: 440 TTVISGWTFETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAW 490


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 111/212 (52%), Gaps = 2/212 (0%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P   S ++++ G A   +  L+V+ ++K    +P   TYN+++  + +     +V  +Y 
Sbjct: 153 PAELSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYN 212

Query: 181 EM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           EM ++    P+  TY++L+ A+ +    +  + ++ EMKE G+Q +  +Y TL+ +   V
Sbjct: 213 EMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKV 272

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  +EA  + ++M+ +  C    +T++ +I      G+V +A   +  ML+ G +P++ +
Sbjct: 273 GKVEEALGLVKEMR-ARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVL 331

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +LI   G++    D ++  + +  L   P+
Sbjct: 332 MNNLINILGRSNHLRDAIKLFDEMKLLNCAPN 363



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 126/292 (43%), Gaps = 41/292 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G VE A GL    R  +  +    ++ LI+  G +G  +     Y+ M   G KP+++
Sbjct: 271 KVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVV 330

Query: 158 TYNNLLDTMGR-----------------------------------AKRPW-QVKTIYKE 181
             NNL++ +GR                                   AK P  +  + ++ 
Sbjct: 331 LMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFER 390

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +G+ P+  TY+ L+  Y +    E  L +  EM EKG       Y +L+        
Sbjct: 391 MKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKR 450

Query: 242 TDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            D A E+F+++K  ENC   S   ++ MI      G+++EA  +FNEM + G  P+++  
Sbjct: 451 YDVANELFQELK--ENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAY 508

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEEL 350
            +L+    +A+R D+       + E G TPD      +LN + +T  PK  L
Sbjct: 509 NALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGAL 560



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 84/147 (57%), Gaps = 1/147 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            ++ +IK +G  G  +  +N++ EMK +G  P++  YN L+  M RA+R  +  ++++ M
Sbjct: 472 VYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTM 531

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            +NG +P+ N++  +L    R    +  L ++ +MK   ++  V  +NT+L   +  G  
Sbjct: 532 EENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLF 591

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMI 269
           +EA ++ ++M SS+  Q D  T+SS++
Sbjct: 592 EEAAKLMQEM-SSKGFQYDLITYSSIL 617



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 114/270 (42%), Gaps = 38/270 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNM 156
           +A  V  A  ++ + +  K R   + ++++I +    G+ +    +Y EM   +   P+ 
Sbjct: 165 KAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDT 224

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN------------------------ 192
           +TY+ L+    +  R      ++ EM +NGL P                           
Sbjct: 225 VTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKE 284

Query: 193 -----------TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
                      TY  L+R  G++   ED    Y+ M + G +  V L N L+ +     +
Sbjct: 285 MRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNH 344

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             +A ++F++MK   NC P+  T++++I ++   +  +SEA + F  M + G  P+ F  
Sbjct: 345 LRDAIKLFDEMKLL-NCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTY 403

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + LI  Y K  R +  +  L  + E G  P
Sbjct: 404 SILIDGYCKTNRVEKALLLLEEMDEKGFPP 433



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 1/213 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +   VE A  L +    + +   P A+ +LI   G A  +D    +++E+K      +  
Sbjct: 412 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSAR 471

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++   G+  R  +   ++ EM   G +P+   Y +L+    RA   ++  S++R M
Sbjct: 472 VYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTM 531

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +E G    +  +N +L   A  G    A E+F  MK+S   +PD  +F++++   S  G 
Sbjct: 532 EENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNS-TIKPDVVSFNTILGCLSRAGL 590

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
             EA  +  EM   GF+ +L   +S+++  GK 
Sbjct: 591 FEEAAKLMQEMSSKGFQYDLITYSSILEAVGKV 623



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 10/234 (4%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L+D  +    +     ++TL+ +Y   G  +  L + +EM+A      + TY  L+ 
Sbjct: 243 AIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIR 302

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +G++ R       YK M  +G  P+     +L+   GR+ +  D + ++ EMK      
Sbjct: 303 GLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAP 362

Query: 225 SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           +V  YNT++ ++        EA   FE MK  +   P S+T+S +I       +V +A  
Sbjct: 363 NVVTYNTIIKSLFEAKAPLSEASSWFERMK-KDGIVPSSFTYSILIDGYCKTNRVEKALL 421

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  EM E GF P      SLI   G A+R D        L E         CGC
Sbjct: 422 LLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKE--------NCGC 467



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 3/221 (1%)

Query: 113 RNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
           R +K  I P++F  S LI  Y      +  L + EEM   G  P    Y +L++T+G AK
Sbjct: 390 RMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAK 449

Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
           R      +++E+ +N    +   YA +++ +G+     + ++++ EMK+ G    V  YN
Sbjct: 450 RYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYN 509

Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
            L+         DEAF +F  M+ +  C PD  + + ++   +  G    A  MF +M  
Sbjct: 510 ALMTGMVRAERMDEAFSLFRTMEEN-GCTPDINSHNIILNGLARTGGPKGALEMFTKMKN 568

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  +P++    +++ C  +A   ++  + +  +   G   D
Sbjct: 569 STIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYD 609



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 115/281 (40%), Gaps = 41/281 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G VE A+  Y     +  + D    + LI + G + +    + +++EMK +   PN++
Sbjct: 306 KSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVV 365

Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN ++ ++  AK P  +  + ++ M  +G+ P+  TY+ L+  Y +    E  L +  E
Sbjct: 366 TYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEE 425

Query: 217 MKEKGMQ-----------------------------------LSVTLYNTLLAMCADVGY 241
           M EKG                                      S  +Y  ++      G 
Sbjct: 426 MDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGR 485

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            +EA  +F +MK    C PD + +++++T      ++ EA ++F  M E G  P++    
Sbjct: 486 LNEAINLFNEMKKL-GCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHN 544

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCL 338
            ++    +       +    ++    I PD    +   GCL
Sbjct: 545 IILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCL 585



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 92/188 (48%), Gaps = 9/188 (4%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +   +   +V    ++M     +      + ++R  G+A+     LSV+ ++
Sbjct: 120 TYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQV 179

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K +  + + + YN+++ M    G+ ++  E++ +M S  +C PD+ T+S++I+  +   +
Sbjct: 180 KGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNR 239

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
              A  +F+EM E G +P   + T+L+  Y K  + ++          LG+  + R   C
Sbjct: 240 DDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEA---------LGLVKEMRARRC 290

Query: 338 LLNVMTQT 345
           LL V T T
Sbjct: 291 LLTVFTYT 298


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 1/224 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  AF LY    +E    D   +S LI  +   G     ++++ +M    +KP++ T+N 
Sbjct: 194 VNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNI 253

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+D   +  +  + KT++  M   G+ PN  TY SL+  Y   +      S++  M + G
Sbjct: 254 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGG 313

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +      YN ++     +   DEA  +F+ M   +N  P+  T++S+I      GK+S A
Sbjct: 314 VNPDTQSYNIMINGFCKIKKVDEAMNLFKKM-HCKNIIPNVVTYTSLIDGLCKSGKISYA 372

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
             + +EM + G  P++   +S++    K  + D  +  L +L +
Sbjct: 373 LKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKD 416



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 165/388 (42%), Gaps = 56/388 (14%)

Query: 21  RTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWV 80
           +T   SFQ+  +L++ +     + ++      S N   H +NP  P  + G    S + +
Sbjct: 18  QTLNSSFQQIYTLNYITIIKNDEHNL----VSSFNRLLHQKNPTPPIFEFGKILGSLVKI 73

Query: 81  NPKSPRASKLKEKSYDTRAGNV----------------EMAFGLYDRARNEKWRIDPNA- 123
           N      S  ++      A N+                 ++F ++     + +  DPN  
Sbjct: 74  NCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGY--DPNVI 131

Query: 124 -FSTLIK------LYGT-------AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
             +TLIK       YGT        G     L +   +    V+PN++ YN ++D+M + 
Sbjct: 132 TLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKV 191

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
           K   +   +Y EM   G+SP+  TY++L+  +      +D + ++ +M  + ++  V  +
Sbjct: 192 KLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTF 251

Query: 230 NTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           N L+   C D G   E   +F  M   +  +P+  T+ S++       +V++A ++FN M
Sbjct: 252 NILVDGFCKD-GKMKEGKTVFA-MMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTM 309

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
            + G  P+      +I  + K ++ D+ +    ++    I P         NV+T T   
Sbjct: 310 AQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIP---------NVVTYT--- 357

Query: 349 ELGKLVECVEKSNSKLGYVVKLLLEEQD 376
               L++ + KS  K+ Y +KL+ E  D
Sbjct: 358 ---SLIDGLCKS-GKISYALKLVDEMHD 381



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 115/243 (47%), Gaps = 9/243 (3%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G ++ A  L+++   E  + D   F+ L+  +   G       V+  M   G+KPN++T
Sbjct: 226 VGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVT 285

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y +L+D     K+  +  +I+  M   G++P+  +Y  ++  + + +  ++ ++++++M 
Sbjct: 286 YCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMH 345

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            K +  +V  Y +L+      G    A ++ ++M       PD  T+SS++       +V
Sbjct: 346 CKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEM-HDRGVPPDIITYSSILDALCKNHQV 404

Query: 279 SEAEAM--------FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +A A+        F ++   G+  +++  T +IQ +      ++ +  L+++ + G  P
Sbjct: 405 DKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIP 464

Query: 331 DDR 333
           D +
Sbjct: 465 DAK 467


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 2/237 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ AF ++   R +        ++ LI        F   + +  ++  +G+ PN++TY
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTY 336

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L++      +      ++ ++  +GLSP   TY +L+  Y +       L + +EM+E
Sbjct: 337 NILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEE 396

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           + +  S   Y  L+   A + YTD+A E+   M+ S    PD +T+S +I      G + 
Sbjct: 397 RCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKS-GLVPDVYTYSVLIHGXCVNGNMK 455

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFC 335
           EA   F  + E   +PN  +  ++I  Y K   +   +R LN +   G+ P+   FC
Sbjct: 456 EASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFC 512



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 5/218 (2%)

Query: 116 KWRIDPNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K ++  NA+S  I + G   AG F     +   ++  G+ PN++ Y  L+D   +     
Sbjct: 151 KSKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVM 210

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
             K ++ +M   GL PN +TY+ L+  + +     +   +Y  M   G+  +   YN L+
Sbjct: 211 LAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLI 270

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAG 292
           +   + G  D+AF++F +M+  +       T++ +I    CRG K  EA  + +++ + G
Sbjct: 271 SEYCNDGMVDKAFKVFAEMR-EKGIACGVMTYNILIG-GLCRGKKFGEAVKLVHKVNKVG 328

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             PN+     LI  +    + D  VR  N+L   G++P
Sbjct: 329 LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSP 366



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 91/199 (45%), Gaps = 1/199 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G ++ A  L+++ ++         ++TLI  Y    N  G L++ +EM+   +  + +T
Sbjct: 346 VGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVT 405

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+D   R     +   ++  M  +GL P+  TY+ L+         ++    ++ + 
Sbjct: 406 YTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLG 465

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E  +Q +  +YNT++      G +  A  +  +M  S    P+  +F S + +     K 
Sbjct: 466 EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHS-GMVPNVASFCSTMGLLCRDEKW 524

Query: 279 SEAEAMFNEMLEAGFEPNL 297
            EAE +  +M+ +G +P++
Sbjct: 525 KEAELLLGQMINSGLKPSV 543



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 8/150 (5%)

Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
           Y +++ AY  +   +  L+    M  +G       +N LL +     Y D+A+ IF  +K
Sbjct: 92  YDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVLK 151

Query: 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
           S      ++++F  MIT C   G       +   + E G  PN+ + T+LI       + 
Sbjct: 152 SK--VVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLID---GCCKN 206

Query: 314 DDVVRALN---RLPELGITPDDRFCGCLLN 340
            DV+ A N   ++  LG+ P+      L+N
Sbjct: 207 GDVMLAKNLFCKMDRLGLVPNQHTYSVLMN 236



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 2/182 (1%)

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ +++    +    Q  T    M   G +P  NT+ +LL    R+ Y +    ++  +K
Sbjct: 92  YDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVLK 151

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            K + L+   +  ++  C + GY    F +   ++      P+   ++++I  C   G V
Sbjct: 152 SK-VVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEF-GLSPNVVIYTTLIDGCCKNGDV 209

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
             A+ +F +M   G  PN    + L+  + K     +  +    +   GI P+     CL
Sbjct: 210 MLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCL 269

Query: 339 LN 340
           ++
Sbjct: 270 IS 271



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/127 (19%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 115 EKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  + P+ ++  + ++G    GN       ++ +  + ++PN + YN ++    +    
Sbjct: 430 EKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSS 489

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
           ++   +  EM  +G+ PN  ++ S +    R    ++   +  +M   G++ SV+LY  +
Sbjct: 490 YRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549

Query: 233 LAMCADV 239
             +  DV
Sbjct: 550 HKVKGDV 556


>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
 gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ ++    TA   D  L +Y  +    ++PN  T++ ++    + K P + K +  +M 
Sbjct: 144 FNDVLMALVTANESDLVLKLYSGLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVLDQMM 203

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G +PN  T   L+ ++ +    ++T  V+  M   G + ++  YN LL     VG  D
Sbjct: 204 QKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYVGRID 263

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EAFE+ ED+K +   +PD +T+++M+      G+  EA  + NE +E G  PN+    +L
Sbjct: 264 EAFELMEDIKKT-TVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVVTFNTL 322

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  Y K  R       L  + +    PD
Sbjct: 323 LDGYAKEGRPLKGFGVLKLMKQRKCMPD 350



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 12/230 (5%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G ++ AF L +  +      D   ++ ++  +   G  D  + +  E   +G+ PN++T
Sbjct: 259 VGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVVT 318

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVYR 215
           +N LLD   +  RP +   + K M      P++ +Y++LL     +G+   G   L ++ 
Sbjct: 319 FNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGLLLWGKVLAG---LRIFN 375

Query: 216 EMKEKGMQLSVTLYNTLL-AMC----ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           EM+  G++    L N+L+  +C     +    + A+E+FE MK        S T++ +I 
Sbjct: 376 EMEGSGLEADERLMNSLVRGLCRKSIKENDLVEVAYEVFEKMKKRGFVIEQS-TYALVIQ 434

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
                 KV +A    ++M+  G+ P L  + ++IQ      + D     L
Sbjct: 435 ALWVAKKVDDAFINLHQMVRLGYIPRLITINNVIQALCVGGKVDKAFYVL 484



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 99/253 (39%), Gaps = 43/253 (16%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +PN    + LI  +   G       V+E M  IG KPN+ TYN LL  M    R  +   
Sbjct: 208 NPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYVGRIDEAFE 267

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + +++    + P+  TY +++  + +    ++ + +  E  E G+  +V  +NTLL   A
Sbjct: 268 LMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVVTFNTLLDGYA 327

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM--------- 288
             G   + F + + MK  + C PD  ++S+++      GKV     +FNEM         
Sbjct: 328 KEGRPLKGFGVLKLMKQRK-CMPDYISYSTLLHGLLLWGKVLAGLRIFNEMEGSGLEADE 386

Query: 289 -------------------------------LEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
                                           + GF         +IQ    A++ DD  
Sbjct: 387 RLMNSLVRGLCRKSIKENDLVEVAYEVFEKMKKRGFVIEQSTYALVIQALWVAKKVDDAF 446

Query: 318 RALNRLPELGITP 330
             L+++  LG  P
Sbjct: 447 INLHQMVRLGYIP 459



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 87/177 (49%), Gaps = 1/177 (0%)

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N+  +N++L  +  A     V  +Y  ++   L PN  T++ ++R + + +   +   V 
Sbjct: 140 NISDFNDVLMALVTANESDLVLKLYSGLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVL 199

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M +KG   +V     L+     +G     F++FE M     C+P+  T++ ++     
Sbjct: 200 DQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRI-GCKPNIQTYNCLLKGMCY 258

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G++ EA  +  ++ +   EP+++  T+++  + K  R+D+ +  LN   E+G+ P+
Sbjct: 259 VGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPN 315


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 124/278 (44%), Gaps = 11/278 (3%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNA- 123
           G +P +    +  + +   +    Y+T      RAG V+ A G+ D  +     +DPN  
Sbjct: 183 GDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAG--VDPNVA 240

Query: 124 -FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            ++  I  Y      +   ++YE M   GV  +++T + L+  + R  R  +   +++EM
Sbjct: 241 TYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREM 300

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G +PN  TY +L+ +  +A  G++ LS+  EM  +G+ + +  Y  L+      G T
Sbjct: 301 DKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKT 360

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           DE  +       S+N  P+  T++ +I        V EAE +  EM E    PN+   +S
Sbjct: 361 DEVKDTLR-FALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSS 419

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           +I  + K    D        + E GI P+    G L++
Sbjct: 420 VINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 1/220 (0%)

Query: 113 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           RN   + D + ++T+I  +   G     L +  EMK   +KPN+ITYN L+  +      
Sbjct: 581 RNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAV 640

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            + K +  EM   G SP+  T+  +L+A  ++R  +  L ++  M   G+   +T+YNTL
Sbjct: 641 EKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTL 700

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           L +    G T +A  + E+M  S    PD+ TF+++I        +  A A + +ML   
Sbjct: 701 LQVLCYHGMTRKATVVLEEMLGS-GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQN 759

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             PN+    +L+       R  +    L  + + G+ P++
Sbjct: 760 ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNN 799



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 131/318 (41%), Gaps = 9/318 (2%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  R   VE AF LY+        +D    S L+      G F     ++ EM  +G  P
Sbjct: 248 YYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAP 307

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N +TY  L+D++ +A R  ++ ++  EM   G+  +  TY +L+   G+    ++     
Sbjct: 308 NHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTL 367

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           R      +  +   Y  L+         DEA ++  +M+  ++  P+  TFSS+I     
Sbjct: 368 RFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEME-EKSISPNVVTFSSVINGFVK 426

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           RG + +A      M E G  PN+    +LI  + K Q  D  +   + +   G+  +   
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFI 486

Query: 335 CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV-----VKLLLEEQDIEGDFKKEATEL 388
              L+N + Q  K EE   L +    S   L +V     +  L +  D+   FK     +
Sbjct: 487 VDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELM 546

Query: 389 FNSISKD--VKKAYCNCL 404
             ++  D  V   + NCL
Sbjct: 547 DRNMLPDAVVYNVFINCL 564



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 1/204 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+ LI  +  + + D     Y +M    + PN+ T+N LL  +    R  +  T+ 
Sbjct: 728 DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVL 787

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM  +GL PN  TY  L   +G+     + + +Y EM  KG    V+ YN L++     
Sbjct: 788 IEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKA 847

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A E+F+DM+      P S T+  +++  S     +E +    +M E GF P+   
Sbjct: 848 GMMTQAKELFKDMQ-KRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGT 906

Query: 300 LTSLIQCYGKAQRTDDVVRALNRL 323
           L+ + + + K   T    R L  L
Sbjct: 907 LSFICRAFSKPGMTWQAQRLLKNL 930



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 5/234 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E A  L+  A      +D   ++TLI     AG+        +E+    + P+ + Y
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N  ++ +    +  + K+   EM + GL P+ +TY +++ ++ R       L +  EMK 
Sbjct: 558 NVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             ++ ++  YNTL+A     G  ++A  +  +M S+    P S T   ++  CS   ++ 
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSA-GFSPSSLTHRRVLQACSQSRRLD 676

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQ--CYGKAQRTDDVVRALNRLPELGITPD 331
               +   M+ AG   ++ V  +L+Q  CY    R   VV  L  +   GI PD
Sbjct: 677 VILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVV--LEEMLGSGIAPD 728



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 3/219 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E+  I PN   FS++I  +   G  D        MK  G+ PN++TY  L+D   + +  
Sbjct: 406 EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQ 465

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                +Y +M   G+  N     SL+    +    E+ ++++++    G+ L    Y TL
Sbjct: 466 DAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTL 525

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +      G    AF+  +++    N  PD+  ++  I      GK  EA++   EM   G
Sbjct: 526 IDGLFKAGDMPTAFKFGQELM-DRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMG 584

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +P+     ++I  + +   T   ++ L+ +    I P+
Sbjct: 585 LKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPN 623



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 89/193 (46%), Gaps = 5/193 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           ++ +++ AF  Y +  ++   I PN   F+TL+    + G       V  EM+  G++PN
Sbjct: 741 KSSHLDNAFATYAQMLHQN--ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TY+ L    G+     +   +Y EM   G  P  +TY +L+  + +A        +++
Sbjct: 799 NLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFK 858

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M+++G+  +   Y+ L++  + +    E  +  +DMK  +   P   T S +    S  
Sbjct: 859 DMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMK-EKGFSPSKGTLSFICRAFSKP 917

Query: 276 GKVSEAEAMFNEM 288
           G   +A+ +   +
Sbjct: 918 GMTWQAQRLLKNL 930


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN   +S+L++ Y  +G ++    V+ EM   G++P+++ Y  L+D++ +  +  +  
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +   M   GL PN  TY  L+    +    ++ + V ++M EKG+   V  YNTL+   
Sbjct: 241 GVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 237 ADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           +DV   DEA  + E+M   +N  +P+  TF+S+I      G++ +A  +   M E G   
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMV 360

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           NL     LI    +  +    +  ++ +  LG+ PD
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPD 396



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 5/198 (2%)

Query: 121 PNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA S  + +     +   D  + +   M++ GV+ +++TY  L+  +  A    +   +
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
             EM ++G+ PN   Y+SLL+ Y ++   ED   V+ EM EKG++  V +Y  L+     
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNL 297
           VG   +A  +  DM      +P+  T++ +I  C C+ G V EA  +  +M E G  P++
Sbjct: 233 VGKAKKAHGVM-DMMVRRGLEPNVVTYNVLIN-CMCKEGSVKEAIGVLKKMSEKGVAPDV 290

Query: 298 FVLTSLIQCYGKAQRTDD 315
               +LI+        D+
Sbjct: 291 VTYNTLIKGLSDVLEMDE 308



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 1/179 (0%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +PN ++Y  L+  +   +   Q   + + M   G+  +  TY +L+R    A   +  + 
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +  EM E G++ +V +Y++LL      G  ++  ++F +M S +  +PD   ++ +I   
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEM-SEKGIEPDVVMYTGLIDSL 230

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              GK  +A  + + M+  G EPN+     LI C  K     + +  L ++ E G+ PD
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 104/256 (40%), Gaps = 37/256 (14%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   F+++I+     G       V   M+  G   N++TYN L+  + R  +  +  
Sbjct: 323 VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAM 382

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGR---ARYGEDTLSVYRE----------------M 217
            +  EMT  GL P+  TY+ L++ + +       ED LS  R+                M
Sbjct: 383 ELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAM 442

Query: 218 KEKGMQ---------------LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
            E+GM                L V  Y+T++      G    A E+ + +   E   PD+
Sbjct: 443 CEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSI-VDEGLTPDA 501

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
            T+S +I + +  G +  A  +  +M  +GF P++ V  SLIQ Y      + V+  +  
Sbjct: 502 VTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIRE 561

Query: 323 LPELGITPDDRFCGCL 338
           +    I  D +    L
Sbjct: 562 MITKNIALDSKIISTL 577



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 107 GLYDRARN------EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           G+ +RARN        + +D  A+ST+I     AG+      + + +   G+ P+ +TY+
Sbjct: 446 GMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYS 505

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            +++   ++        + K+MT +G  P+   + SL++ Y         L + REM  K
Sbjct: 506 IVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITK 565

Query: 221 GMQLSVTLYNTL 232
            + L   + +TL
Sbjct: 566 NIALDSKIISTL 577


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 147/334 (44%), Gaps = 30/334 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++  A  +++  R    R    +F+TLI     + N D    + + M+   + P++ 
Sbjct: 235 KEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVF 294

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+  + +  R    + ++ EM   GL PN  T+ +L+    R+R  +  ++ Y +M
Sbjct: 295 TYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQM 354

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++  + +YNTLL     VG  ++A ++ ++MK     +PD  T++++I      G 
Sbjct: 355 LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMV-GMKPDKITYTTLIDGYCKEGD 413

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  +   M E G   +    T+LI  + +  R  D  R L  + E G+ PDD     
Sbjct: 414 LESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTM 473

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT--ELFNSISKD 395
           +++                 +K N K+G+    LL+E  I G      T   L N + K 
Sbjct: 474 VID--------------GYCKKGNVKMGFK---LLKEMQINGHKPGVITYNVLMNGLCKQ 516

Query: 396 VKKAYCNCLIDLCVNLN----------LLENACK 419
            +    N L++  +NL           LLE  CK
Sbjct: 517 GQMKNANMLLEAMLNLGVTPDDITYNILLEGHCK 550



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 3/253 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +++A  L+D  +    R +   F+ LI     +   D  +N Y +M  +GVKP+++
Sbjct: 305 KEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLV 364

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LL+ + +     + + +  EM   G+ P+  TY +L+  Y +    E  + + + M
Sbjct: 365 MYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGM 424

Query: 218 KEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            E+G+ L    +  L++  C D G   +A     +M  +   +PD  T++ +I     +G
Sbjct: 425 NEEGVVLDNVAFTALISGFCRD-GRVRDAERTLREMVEA-GMKPDDATYTMVIDGYCKKG 482

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V     +  EM   G +P +     L+    K  +  +    L  +  LG+TPDD    
Sbjct: 483 NVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYN 542

Query: 337 CLLNVMTQTPKEE 349
            LL    +  K E
Sbjct: 543 ILLEGHCKNGKAE 555



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 1/179 (0%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LLD M  +  P  + T Y E+ + G  P    Y  L+  + +     D   ++ E++++G
Sbjct: 194 LLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRG 253

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +   +NTL+         DE F + + M+ +    PD +T+S +I      G++  A
Sbjct: 254 LRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENR-IYPDVFTYSVLIHGLCKEGRLDVA 312

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           E +F+EM + G  PN    T+LI    +++R D  +   +++  +G+ PD      LLN
Sbjct: 313 EQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLN 371



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 103/233 (44%), Gaps = 1/233 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G V  A   +   RN  ++I  +    L+     + +       Y E+   G  P +  
Sbjct: 166 SGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQY 225

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L++   +       K I+ E+   GL P   ++ +L+    ++R  ++   + + M+
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           E  +   V  Y+ L+      G  D A ++F++M+     +P+  TF+++I       ++
Sbjct: 286 ENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQ-QRGLRPNGITFTALIDGQYRSRRM 344

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             A   +++ML  G +P+L +  +L+    K    +   + ++ +  +G+ PD
Sbjct: 345 DSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPD 397



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +I  Y   GN      + +EM+  G KP +ITYN L++ + +  +      + 
Sbjct: 467 DDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLL 526

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
           + M + G++P+  TY  LL  + +    ED L +     EKG+ +    Y +L++
Sbjct: 527 EAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKL---RNEKGLIVDYAYYTSLVS 578


>gi|15220166|ref|NP_178170.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75264854|sp|Q9M8M3.1|PP136_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g80550, mitochondrial; Flags: Precursor
 gi|6730729|gb|AAF27119.1|AC018849_7 unknown protein; 31926-33272 [Arabidopsis thaliana]
 gi|332198297|gb|AEE36418.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 448

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 111/218 (50%), Gaps = 4/218 (1%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
           +++ +   G +  C   +++M   GV  ++ +Y+  +D M ++ +PW+   +YKEM    
Sbjct: 195 ILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRR 254

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
           +  +   Y +++RA G ++  E  + V+REM+E+G + +V  +NT++ +  + G   +A+
Sbjct: 255 MKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAY 314

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
            + ++M     CQPDS T+  + +      K SE  ++F  M+ +G  P +     L++ 
Sbjct: 315 RMLDEM-PKRGCQPDSITYMCLFSRLE---KPSEILSLFGRMIRSGVRPKMDTYVMLMRK 370

Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           + +      V+     + E G TPD      +++ + Q
Sbjct: 371 FERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQ 408



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 4/198 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G    A  LY   ++ + ++D  A++T+I+  G +   +  + V+ EM+  G +PN+ 
Sbjct: 236 KSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVA 295

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N ++  +    R      +  EM   G  P+  TY  L   + R     + LS++  M
Sbjct: 296 THNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCL---FSRLEKPSEILSLFGRM 352

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++  +  Y  L+      G+      +++ MK S +  PDS  ++++I     +G 
Sbjct: 353 IRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGD-TPDSAAYNAVIDALIQKGM 411

Query: 278 VSEAEAMFNEMLEAGFEP 295
           +  A     EM+E G  P
Sbjct: 412 LDMAREYEEEMIERGLSP 429


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 133/278 (47%), Gaps = 11/278 (3%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNE-KWRIDPNAFS-- 125
           K G   K+YI  +    R       +Y++    +  A  + DRA       + PN F+  
Sbjct: 23  KEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAM-DRAMEVLTVMVMPNCFTYN 81

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
           +++  Y ++G  +  + ++ +M + G++P+++TYN+L+D + +  +  + + I+  M   
Sbjct: 82  SIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKR 141

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           GL P+  TY +LL  Y       +   +   M + GMQL   ++N L+         DE 
Sbjct: 142 GLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEV 201

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
             +F  M+  +   P++  + ++I      G++ +A   F +M++ G  PN+ V TSLI 
Sbjct: 202 VLVFSKMR-QQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIH 260

Query: 306 C---YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
               Y K ++ ++++     + + GI P+  F   +L+
Sbjct: 261 ALCTYDKWEKAEELIF---EILDQGINPNIVFFNTILD 295



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 2/238 (0%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
            Y ++   VEM   L    +N   ++D + F+ LI  Y      D  + V+ +M+  G+ 
Sbjct: 156 GYASKGALVEMHDLLALMVQN-GMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLT 214

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           PN + Y  ++D + +  R       +++M D GL+PN   Y SL+ A       E    +
Sbjct: 215 PNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEEL 274

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
             E+ ++G+  ++  +NT+L      G   E+ ++F D+       PD  T+S++I    
Sbjct: 275 IFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLF-DLLGHIGVNPDVITYSTLIDGYC 333

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             GK+  A  +   M+  G +P+    ++LI  Y K  R +D +     +   G+ PD
Sbjct: 334 LAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPD 391



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 106/215 (49%), Gaps = 11/215 (5%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---RPWQVK 176
           D  +++T+I      G+ D     Y EM    V P+ +TYN+++  + +A+   R  +V 
Sbjct: 10  DVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVL 69

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           T+        + PN  TY S++  Y  +   E  + ++R+M   G++  V  YN+L+   
Sbjct: 70  TVM-------VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYL 122

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G   EA +IF+ M      +PD  T+ +++   + +G + E   +   M++ G + +
Sbjct: 123 CKNGKCTEARKIFDSM-VKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLD 181

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             V   LI  Y K ++ D+VV   +++ + G+TP+
Sbjct: 182 HHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPN 216



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 68/136 (50%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  +  L+D   +     D   +STLI  Y  AG  DG + +   M ++G+KP+ +
Sbjct: 299 KEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSV 358

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++   +  R      ++KEM  NG++P+  TY  +L    R R       +Y  +
Sbjct: 359 TYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARI 418

Query: 218 KEKGMQLSVTLYNTLL 233
            E G QL ++ YN +L
Sbjct: 419 TESGTQLELSTYNIIL 434



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 2/128 (1%)

Query: 76  SYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 135
            +I VNP     S L +      AG ++ A  L     +   + D   +STLI  Y    
Sbjct: 314 GHIGVNPDVITYSTLIDGY--CLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKIN 371

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
             +  L +++EM++ GV P++ITYN +L  + R +R    K +Y  +T++G     +TY 
Sbjct: 372 RMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYN 431

Query: 196 SLLRAYGR 203
            +L  + +
Sbjct: 432 IILMDFAK 439


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 1/211 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+T I  +   G  +  + ++ +M+  GV PN++TYN ++D +G + R  +     
Sbjct: 251 DVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFK 310

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           ++M + G+ P   TY+ L++   +A+   D   V +EM EKG   +V +YN L+    + 
Sbjct: 311 EKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEA 370

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A EI +D+  S+     S T++++I      G+   AE +  EML  GF  N   
Sbjct: 371 GSLNKAIEI-KDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGS 429

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            TS+I         D  +R +  +    ++P
Sbjct: 430 FTSVICLLCSHHMFDSALRFVGEMLLRNMSP 460



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 5/235 (2%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNM 156
           AG +E  F +        + +D  +++TLI   G  GN   D      +EM   G+KP+ 
Sbjct: 510 AGKLEEGFRIQKEILGRGFVMDRVSYNTLIS--GCCGNKKLDEAFMFMDEMVKKGLKPDN 567

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY+ L+  +    +  +    + +   NG+ P+  TY+ ++    +A   E+   ++ E
Sbjct: 568 YTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDE 627

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M    +Q +  +YN L+      G    A E+ EDMK  +   P+S T++S+I   S   
Sbjct: 628 MMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMK-HKGISPNSATYTSLIKGMSIIS 686

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +V EA+ +  EM   G EPN+F  T+LI  YGK  +   V   L  +    + P+
Sbjct: 687 RVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN 741



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF   D    +  + D   +S LI+        +  +  + + K  G+ P++ TY+ ++D
Sbjct: 551 AFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMID 610

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              +A+R  + + ++ EM  N L PN   Y  L+ AY R+      L +  +MK KG+  
Sbjct: 611 GCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISP 670

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y +L+   + +   +EA  + E+M+  E  +P+ + ++++I      G++ + E +
Sbjct: 671 NSATYTSLIKGMSIISRVEEAKLLLEEMR-MEGLEPNVFHYTALIDGYGKLGQMVKVECL 729

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EM      PN    T +I  Y +     +  R L+ + E GI PD
Sbjct: 730 LREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPD 776



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 1/167 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           +++EM +  ++PN + YN+L+    R+ R      + ++M   G+SPN  TY SL++   
Sbjct: 624 LFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMS 683

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
                E+   +  EM+ +G++ +V  Y  L+     +G   +   +  +M S +N  P+ 
Sbjct: 684 IISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHS-KNVHPNK 742

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
            T++ MI   +  G V+EA  + +EM E G  P+       I  Y K
Sbjct: 743 ITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLK 789



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 5/181 (2%)

Query: 127 LIKLYGTAGNFDGC---LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           LI++Y T    DGC   L+V+  +   G+ P+  T N LL ++ RA    +    +  + 
Sbjct: 186 LIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAF-HVV 244

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+SP+   + + + A+ +    E+ + ++ +M+E G+  +V  YNT++      G  D
Sbjct: 245 CKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYD 304

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EAF +F++       +P   T+S ++   +   ++ +A  +  EM E GF PN+ V  +L
Sbjct: 305 EAF-MFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNL 363

Query: 304 I 304
           I
Sbjct: 364 I 364



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 1/162 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+D   +   + +   ++ LI  Y  +G     L + E+MK  G+ PN  TY +L+  M 
Sbjct: 624 LFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMS 683

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
              R  + K + +EM   GL PN   Y +L+  YG+         + REM  K +  +  
Sbjct: 684 IISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKI 743

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
            Y  ++   A  G   EA  +  +M+  +   PDS T+   I
Sbjct: 744 TYTVMIGGYARDGNVTEASRLLHEMR-EKGIVPDSITYKEFI 784



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 123/316 (38%), Gaps = 51/316 (16%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G  ++A  L     +  + ++  +F+++I L  +   FD  L    EM    + P   
Sbjct: 404 KSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGG 463

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
               L+  + +  +  +   ++ +  + G   +  T  +LL     A   E+   + +E+
Sbjct: 464 LLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEI 523

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-----------------------KS 254
             +G  +    YNTL++ C      DEAF   ++M                       K 
Sbjct: 524 LGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKV 583

Query: 255 SENCQ-----------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            E  Q           PD +T+S MI  C    +  E + +F+EM+    +PN  V   L
Sbjct: 584 EEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHL 643

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSK 363
           I  Y ++ R    +     +   GI+P+      L+  M+         ++  VE++   
Sbjct: 644 IGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMS---------IISRVEEA--- 691

Query: 364 LGYVVKLLLEEQDIEG 379
                KLLLEE  +EG
Sbjct: 692 -----KLLLEEMRMEG 702



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           L V+  +  KGM  S T  N LL          +  E F  +   +   PD + F++ I 
Sbjct: 203 LDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVV--CKGVSPDVYLFTTAIN 260

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                GKV EA  +F++M EAG  PN+    ++I   G + R D+      ++ E G+ P
Sbjct: 261 AFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEP 320



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           VE A  L +  R E   ++PN F  + LI  YG  G       +  EM +  V PN ITY
Sbjct: 688 VEEAKLLLEEMRMEG--LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITY 745

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
             ++    R     +   +  EM + G+ P+  TY   +  Y
Sbjct: 746 TVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGY 787


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 1/242 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++ MAF      +   +R     ++ ++     AG  D   ++ +EM   GV PN  
Sbjct: 487 KIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNER 546

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L++              +  + + GL P+   YASLL+A  +A   + TL++  EM
Sbjct: 547 SYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEM 606

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G+ ++  +YN LL   A  G   EA +I + M+  E   PD  +++S I  C   G 
Sbjct: 607 AAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRH-EGLTPDIHSYTSFINACCKAGD 665

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +A     +M + G +PNL   T+LI  +  A   +  +   + +   G+ PD     C
Sbjct: 666 MLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHC 725

Query: 338 LL 339
           ++
Sbjct: 726 IM 727



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 16/246 (6%)

Query: 92  EKSYDTRA------GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE 145
           E+SY T        G++ +AF  ++R +    + D  A+++L+K    AG     L +  
Sbjct: 545 ERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITA 604

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           EM A GV  N   YN LLD   +    W+   I ++M   GL+P+ ++Y S + A  +A 
Sbjct: 605 EMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAG 664

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
                     +MK++G+Q ++  Y TL+   A   Y ++A   +++MKS+    PD   +
Sbjct: 665 DMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYDEMKSA-GMIPDKPLY 723

Query: 266 SSMITICSCRGKVSEAEAMFN-------EMLEAGFEPNLFVLTSLIQCYGKAQR-TDDVV 317
             ++T    R  V+  E +F+       EM++ G   +        +   KA+R + D+ 
Sbjct: 724 HCIMTSLLSRAAVAR-ETVFDGVLRVTSEMVDQGICVDFATAKHWQRFLIKAERQSGDLT 782

Query: 318 RALNRL 323
           RA+ R+
Sbjct: 783 RAVERI 788



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 122/310 (39%), Gaps = 80/310 (25%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF-------------------- 137
           R G+VE A   + RA +E W  +   ++ +I  Y  AGN                     
Sbjct: 274 RLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLG 333

Query: 138 ---------------DGCLNVYEEMKA---IGVKPNMITYN---NLLDTMGRAKRPWQVK 176
                          D CLNV+  +KA    G+ P +++Y    NL   +G+  +  Q+ 
Sbjct: 334 LYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQIS 393

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 235
               EM D G+  N  TY+ ++  Y +     +  SV+ +M   G++     YN L+ A 
Sbjct: 394 N---EMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAF 450

Query: 236 CAD----------------------------------VGYTDEAFEIFEDMKSSENCQPD 261
           C +                                  +G    AFE   DMK +   +P 
Sbjct: 451 CKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMA-GFRPS 509

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
           + T++ ++   +  G++  A ++ +EM+ AG  PN    T+LI+ Y          +  N
Sbjct: 510 AATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFN 569

Query: 322 RLPELGITPD 331
           R+ E+G+ PD
Sbjct: 570 RIKEVGLKPD 579



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 108/248 (43%), Gaps = 1/248 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G ++ A  + +   ++  + +   +S +I  Y   G+     +V+E+M   G+KP+ 
Sbjct: 381 SKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDG 440

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           ITYN L++   +  +  +   +   M      P   TY  ++  + +           R+
Sbjct: 441 ITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRD 500

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           MK  G + S   YN ++   A  G  D A  I ++M  +    P+  +++++I   +C G
Sbjct: 501 MKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVA-GVHPNERSYTTLIEGYACIG 559

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            +  A   FN + E G +P++    SL++   KA R    +     +   G+  ++    
Sbjct: 560 DMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYN 619

Query: 337 CLLNVMTQ 344
            LL+   Q
Sbjct: 620 ILLDGWAQ 627



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 15/242 (6%)

Query: 111 RARNEKWR---IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
           RA  E  R   I+PN  +++ LI  Y  A +  G +   EEM+A GV PN  TY+ ++  
Sbjct: 212 RAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISG 271

Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWN----TYASLLRAYGRARYGEDTLSVYREMKEKG 221
            GR       +  ++      LS NW+     Y +++ AY +A   E   ++   M+E+G
Sbjct: 272 YGRLGDVEAAERWFQR----ALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQG 327

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS--SENCQPDSWTFSSMITICSCRGKVS 279
           ++ ++ LYN L+         D+   +F  +K+       P   ++  +I + S  GK+ 
Sbjct: 328 LEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMD 387

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           +A  + NEM + G + N    + +I  Y +   T +       +   GI PD      L+
Sbjct: 388 KALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILM 447

Query: 340 NV 341
           N 
Sbjct: 448 NA 449



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 9/212 (4%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           KP    +  L++  G+       +  ++ M   G+ PN ++Y +L+ AY  A+     ++
Sbjct: 189 KPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIA 248

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
              EM+ +G+  +   Y+ +++    +G  + A   F+    SEN   +   ++++I   
Sbjct: 249 CVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQ-RALSENWHHNDVIYNNIIHAY 307

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD---DVVRALNRLPELGIT 329
              G +  AEA+   M E G E  L +   L+  Y   +  D   +V R L    E G++
Sbjct: 308 CKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLS 367

Query: 330 PDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
           P     GCL+N+ ++     LGK+ + ++ SN
Sbjct: 368 PTVVSYGCLINLYSK-----LGKMDKALQISN 394


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 108/234 (46%), Gaps = 3/234 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG V  A  ++   + +    DP+ ++T++     AG       +  +  A G +PN++ 
Sbjct: 155 AGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVV 214

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+D             +++ M  NG SPN  TY  L+  + ++R  +  + ++  M 
Sbjct: 215 YNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMV 274

Query: 219 EKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + G+  +V  Y  L+   C+D G  D A+ + + M++S    P+ WT S +I       +
Sbjct: 275 DAGLVPNVVTYTALIQGQCSD-GQLDCAYRLLQSMENS-GLVPNEWTCSVLIDALCKHER 332

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EA+ +   +++ G + N  V TSLI    KA R     R +  L   G  PD
Sbjct: 333 VGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPD 386



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 11/237 (4%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D +A+++ +  Y  AG       ++  M   G      TY  LL  +  A    +  +++
Sbjct: 106 DSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVF 165

Query: 180 KEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             M  +G +P+ + YA+++      GR R  E  LS   +   +G + +V +YN L+   
Sbjct: 166 AGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLS---DAMAEGFEPNVVVYNALIDGY 222

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEP 295
            +VG  + A ++FE M  +  C P+  T++ +I+  C  R K+  A  +F+ M++AG  P
Sbjct: 223 CNVGDLELAVDVFERMDVN-GCSPNVRTYTELISGFCKSR-KLDRAMMLFSRMVDAGLVP 280

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
           N+   T+LIQ      + D   R L  +   G+ P++  C  L++ + +   E +G+
Sbjct: 281 NVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCK--HERVGE 335



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 1/174 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  L     ++ +  D + +S+LI            + V ++M   GV+P+ +
Sbjct: 364 KAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPV 423

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D + R       K I  +M   G+ P+  TY   +R+Y      ED   +   M
Sbjct: 424 TYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHM 483

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            + G+  ++  YN L+   A++G T +AF  F+ M ++  C+P+  +++ ++ +
Sbjct: 484 VDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVAN-GCKPNEESYTVLLRL 536



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 97/219 (44%), Gaps = 4/219 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  ++  G       +  +++   +++LI     AG F     + + + + G  P+  
Sbjct: 332 RVGEAQLLLG---SLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAH 388

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY++L+D + R K   +   +  +M + G+ P+  TY  ++    R    + +  +  +M
Sbjct: 389 TYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKM 448

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++  V  Y   +      G  ++A  +   M     C P+  T++++I   +  G 
Sbjct: 449 IAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVC-PNLVTYNALICGYANLGL 507

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
            S+A + F  M+  G +PN    T L++   K + ++++
Sbjct: 508 TSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNI 546



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           EEM  + +   +  YN  L ++ R  R  + K +  EM    L+P+ + Y S++    R 
Sbjct: 567 EEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRL 626

Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSW 263
           +   + L+    M + G    +  Y  +++   + G    A ++F DM S E N +  +W
Sbjct: 627 KMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAW 686

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
               +I     +G V+E  ++ + M E  + P+
Sbjct: 687 RI--LIDGLLQKGYVAECSSLLSVMEEKNYRPS 717


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 118/256 (46%), Gaps = 13/256 (5%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G ++ A  L+++   E  + D   F+ L+  +   G      NV + M    +KPN+ T
Sbjct: 256 VGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVST 315

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N L+D   + ++  + KT++  M   G+ PN  TY SL+  Y   +       ++  M 
Sbjct: 316 FNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMS 375

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           ++G+  +V  YN ++     +   D+A ++F +M   ++  PD  T++S+I      GK+
Sbjct: 376 QRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEM-HHKHIIPDVVTYNSLIDGLCKSGKI 434

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
           S A  + NEM + G  PN+    S++               L +L + GI P+      L
Sbjct: 435 SYAFQLVNEMHDRGQPPNIITYNSILNA------------LLTKLKDQGIQPNMHTDTIL 482

Query: 339 LNVMTQTPKEELGKLV 354
           +  + Q+ K E  + V
Sbjct: 483 IKGLCQSGKLEAARKV 498



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 109/233 (46%), Gaps = 3/233 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  A   +D+     + +D  ++ TLI      G     L +   +    V+ N + Y
Sbjct: 152 GQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMY 211

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++D M + K       +Y EM    +SP+  TY++L+R +      +D + ++ +M  
Sbjct: 212 NTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMIL 271

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKV 278
           + ++  V  +N L+      G   +A  +  DM   ++ +P+  TF++++   C  R K+
Sbjct: 272 ENIKPDVYTFNILVDGFCKEGRLKKAKNVL-DMMMIQDIKPNVSTFNTLVDGFCKDR-KM 329

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            E + +F  M++ G +PN+    SL+  Y   ++ +   +  N + + G+T +
Sbjct: 330 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTAN 382



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN   F+ LI  +   G      +V  ++  +G +P++IT N  +       +  Q  
Sbjct: 99  INPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQAL 158

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
             + ++   G   +  +Y +L+    +       L + R +  K +QL+  +YNT++   
Sbjct: 159 NFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGM 218

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           +   + ++AF+++ +M  ++   PD  T+S++I      GK+ +A  +FN+M+    +P+
Sbjct: 219 SKDKHVNDAFDLYSEM-VAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPD 277

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
           ++    L+  + K  R       L+ +    I P+        D FC
Sbjct: 278 VYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFC 324



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 111/252 (44%), Gaps = 15/252 (5%)

Query: 90  LKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNV 143
           L + SY T      + G    A  L  R   +  +++   ++T+I       + +   ++
Sbjct: 171 LDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDL 230

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-- 201
           Y EM A  + P+++TY+ L+       +      ++ +M    + P+  T+  L+  +  
Sbjct: 231 YSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCK 290

Query: 202 -GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQ 259
            GR +  ++ L +   M  + ++ +V+ +NTL+   C D     E   +F  M   +  +
Sbjct: 291 EGRLKKAKNVLDM---MMIQDIKPNVSTFNTLVDGFCKD-RKMKEGKTVFA-MMMKQGIK 345

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           P+  T+ S++       +V++A+ +FN M + G   N+     +I  + K ++ D  ++ 
Sbjct: 346 PNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKL 405

Query: 320 LNRLPELGITPD 331
              +    I PD
Sbjct: 406 FIEMHHKHIIPD 417



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 12/131 (9%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           ++++ +I  +      D  + ++ EM    + P+++TYN+L+D + ++ +      +  E
Sbjct: 384 HSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNE 443

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M D G  PN  TY S+L A            +  ++K++G+Q ++     L+      G 
Sbjct: 444 MHDRGQPPNIITYNSILNA------------LLTKLKDQGIQPNMHTDTILIKGLCQSGK 491

Query: 242 TDEAFEIFEDM 252
            + A ++FED+
Sbjct: 492 LEAARKVFEDL 502


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 9/238 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++ MA   +D   +E   +D  A++T I      G+     ++ EEM A G  P++I
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLI 515

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 214
            YN ++D + +     +   + ++M  +G+ P++ TY S++ A+   GR R G +   ++
Sbjct: 516 IYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGRE---IF 572

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICS 273
            EM  KG+  SV  Y  L+   A  G  + AF  F +M+  +   P+  T++S+I  +C 
Sbjct: 573 YEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQ-EKGILPNVITYNSLINGLCK 631

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            R ++ +A   F EM+E G  PN +  T LI          + +    ++ + G+ PD
Sbjct: 632 VR-RMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD 688



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 107/215 (49%), Gaps = 3/215 (1%)

Query: 96  DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + + G+   AF L +    + +  D   ++ ++      GN +    + ++M + GV P+
Sbjct: 489 ELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPD 548

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-GRARYGEDTLSVY 214
            +TY +++       R  + + I+ EM   GL+P+  TY  L+  + G+ R  E     +
Sbjct: 549 YVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRL-ERAFIYF 607

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM+EKG+  +V  YN+L+     V   D+A+  F +M   +   P+ ++++ +I     
Sbjct: 608 SEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEM-VEKGIFPNKYSYTILINENCN 666

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
            G   EA +++ +ML+ G +P+    ++L++  GK
Sbjct: 667 MGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGK 701



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 1/206 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           VE    ++D+    +   D    + ++++          + VY  M   G+KP ++TYN 
Sbjct: 180 VEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LLD+  +  +  Q   +  EM   G +PN  TY  L+    +    E    +  EM + G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +++S   YN L+    + G   EA  + E+M   +   P   T++S I      G++S+A
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEM-VLKGASPTVATYNSFIYGLCKLGRMSDA 358

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCY 307
               ++ML     P++    +LI  Y
Sbjct: 359 MQQLSDMLANNLLPDVVSYNTLIYGY 384



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 1/198 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G  E A GL         ++    ++ LI  Y   G     L++ EEM   G  P +
Sbjct: 280 SKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTV 339

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN+ +  + +  R         +M  N L P+  +Y +L+  Y R         ++ E
Sbjct: 340 ATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDE 399

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++   +  ++  YNTLL      G  + A ++  +M  +E   PD  T++ ++      G
Sbjct: 400 LRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEM-INEGIAPDIVTYTILVNGSCKMG 458

Query: 277 KVSEAEAMFNEMLEAGFE 294
            +S A+  F+EML  G E
Sbjct: 459 SLSMAQEFFDEMLHEGLE 476



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 5/209 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+    L    +      +   ++ LI      G F+    +  EM   G+K +  
Sbjct: 246 KGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAY 305

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYR 215
           TYN L+          +  ++ +EM   G SP   TY S +  YG  + G   D +    
Sbjct: 306 TYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFI--YGLCKLGRMSDAMQQLS 363

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M    +   V  YNTL+     +G   +AF +F++++S     P   T+++++     +
Sbjct: 364 DMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY-LFPTIVTYNTLLDGLCRQ 422

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           G++  A+ +  EM+  G  P++   T L+
Sbjct: 423 GELEVAQQLKVEMINEGIAPDIVTYTILV 451


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 3/238 (1%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++ + L ++ R+ K  ++   F  +++ Y  +      +  +  M+   V PN+  +N+L
Sbjct: 94  QIMWDLVNKMRSLKI-LNVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSL 152

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           L  + ++K   + + I+  M D  + P+  TY+ LL  +G+A        ++REM + G 
Sbjct: 153 LSALCKSKNVVKAQEIFNGMKDQFI-PDSKTYSILLEGWGKAPNLPKAREIFREMVDMGC 211

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
              +  Y  ++ +    G  DEA  I ++M SS  C+P S+ +S ++       ++ +A 
Sbjct: 212 DPDIVTYGIMVDILCKAGRVDEAVGIVKEMDSSV-CKPTSFIYSVLVHTYGIENRIEDAV 270

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             F +M     E ++ V  +LI  + K  +  +  R LN +   GI P+ R C  +LN
Sbjct: 271 YTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILN 328



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 121/293 (41%), Gaps = 43/293 (14%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +S L++ +G A N      ++ EM  +G  P+++TY  ++D + +A R  +   I 
Sbjct: 179 DSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIV 238

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMC-- 236
           KEM  +   P    Y+ L+  YG     ED +  + +M+   ++  V +YN L+ A C  
Sbjct: 239 KEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKV 298

Query: 237 --------------------------------ADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                                              G TDEAF +F  M   + C PD+ T
Sbjct: 299 NKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRM--IKVCDPDADT 356

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           ++ MI +     K+  A  ++  M    F P++   + LI    K          L  + 
Sbjct: 357 YTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMI 416

Query: 325 ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI 377
           E GI P     G L  ++ +  +E++ + ++       K+  +VK  L +Q+I
Sbjct: 417 EKGIRPSSVTFGKLKQLLIKEGREDVLEFLQ------EKMNLLVKEPLCDQEI 463


>gi|115435438|ref|NP_001042477.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|17385740|dbj|BAB78680.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|113532008|dbj|BAF04391.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|215740499|dbj|BAG97155.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 636

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 12/220 (5%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ L+K +  AG  +    V   M+A G  P+++TYN L     +    W+ +
Sbjct: 221 VRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAE 280

Query: 177 TIYKEMTDN-GLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            +  EM    GL  +  T+  ++  Y R  R GE  L   R+MK+ G+  +V ++NTLL 
Sbjct: 281 ELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGE-ALRCVRQMKDSGVLPNVIVFNTLLK 339

Query: 235 M---CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
                 D+   D+   + E        +PD  T+S  +   S  G +++   +F++M+EA
Sbjct: 340 GFLDANDMAAVDDVLGLMEQF----GIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEA 395

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G EP+  V + L + Y +AQ+ +     L ++  LG+ P+
Sbjct: 396 GIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPN 435



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 13/248 (5%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R D   F+ LI     A       N +  M   G +P   T+N L+   G A RP + + 
Sbjct: 146 RPDSIFFNALINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQR 205

Query: 178 IYKEMTDNG------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
           ++  M   G      + PN  TY  L++A+  A   E+   V   M+  G    V  YNT
Sbjct: 206 VFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNT 265

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLE 290
           L +  A    T  A E+  +M      +    T+  +I    CR G++ EA     +M +
Sbjct: 266 LASAYAKNDETWRAEELVVEMAQQAGLRTSERTW-GIIVGGYCREGRLGEALRCVRQMKD 324

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 350
           +G  PN+ V  +L++ +  A     V   L  + + GI PD       LN ++      +
Sbjct: 325 SGVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALS-----SM 379

Query: 351 GKLVECVE 358
           G + +C++
Sbjct: 380 GHMAKCMK 387



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 88/177 (49%), Gaps = 3/177 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TL+K +  A +     +V   M+  G+KP+++TY++ L+ +       +   +
Sbjct: 329 PNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKV 388

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M + G+ P+   Y+ L + Y RA+  E    + R+M   G++ +V  + T+++    
Sbjct: 389 FDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWCS 448

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           V     A  ++  M+ +   +P+  TF ++I   S   +  +AE +   M +AG  P
Sbjct: 449 VADMGNAVRVYAAMRDA-GVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRP 504



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +I     +  M  A+RP Q  + ++ + D+G  P+  TY +LL A    R  +    +  
Sbjct: 79  VIARTRQMRAMIDARRPHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLA 138

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           E+++ G++     +N L+    +     EA   F  M  S  C+P + TF+++I      
Sbjct: 139 EVEDAGLRPDSIFFNALINALVEARRMGEATNTFLRMGHS-GCRPTASTFNTLIKGYGIA 197

Query: 276 GKVSEAEAMFNEM------LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           G+  E++ +F+ M       EA   PNL     L++ +  A R ++  R + R+   G  
Sbjct: 198 GRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGAD 257

Query: 330 PD 331
           PD
Sbjct: 258 PD 259



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 1/223 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           + + A+    R     +  ++  Y   G     L    +MK  GV PN+I +N LL    
Sbjct: 283 VVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFL 342

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            A     V  +   M   G+ P+  TY+  L A     +    + V+ +M E G++    
Sbjct: 343 DANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQ 402

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +Y+ L          ++A E+   M      +P+  TF+++I+       +  A  ++  
Sbjct: 403 VYSILAKGYVRAQQPEKAEELLRQM-GRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAA 461

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           M +AG  PNL    +LI  Y + ++       L  + + G+ P
Sbjct: 462 MRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRP 504



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 97/218 (44%), Gaps = 14/218 (6%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G +P+++TY  LL  +   +    +  +  E+ D GL P+   + +L+ A   AR   + 
Sbjct: 109 GHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALVEARRMGEA 168

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-----KSSENCQPDSWTF 265
            + +  M   G + + + +NTL+      G  +E+  +F+ M           +P+  T+
Sbjct: 169 TNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTY 228

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           + ++      G++ EA  +   M  +G +P++    +L   Y K    D+  RA   + E
Sbjct: 229 NILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAK---NDETWRAEELVVE 285

Query: 326 L----GITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
           +    G+   +R  G ++    +  +  LG+ + CV +
Sbjct: 286 MAQQAGLRTSERTWGIIVGGYCREGR--LGEALRCVRQ 321



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G++     ++D+        DP  +S L K Y  A   +    +  +M  +GV+PN++T+
Sbjct: 380 GHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTF 439

Query: 160 NNLLD------TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
             ++        MG A R      +Y  M D G+ PN  T+ +L+  Y   +       V
Sbjct: 440 TTVISGWCSVADMGNAVR------VYAAMRDAGVRPNLRTFETLIWGYSELKQPWKAEEV 493

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
            + M++ G++   T Y  +      VG  + A
Sbjct: 494 LQMMQDAGVRPKQTTYCLVADAWKAVGLVENA 525


>gi|125525011|gb|EAY73125.1| hypothetical protein OsI_00999 [Oryza sativa Indica Group]
          Length = 634

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 12/220 (5%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ L+K +  AG  +    V   M+A G  P+++TYN L     +    W+ +
Sbjct: 221 VRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAE 280

Query: 177 TIYKEMTDN-GLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            +  EM    GL  +  T+  ++  Y R  R GE  L   R+MK+ G+  +V ++NTLL 
Sbjct: 281 ELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGE-ALRCVRQMKDSGVLPNVIVFNTLLK 339

Query: 235 M---CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
                 D+   D+   + E        +PD  T+S  +   S  G +++   +F++M+EA
Sbjct: 340 GFLDANDMAAVDDVLGLMEQF----GIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEA 395

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G EP+  V + L + Y +AQ+ +     L ++  LG+ P+
Sbjct: 396 GIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPN 435



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 13/248 (5%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           R D   F+ LI     A       N +  M   G +P   T+N L+   G A RP + + 
Sbjct: 146 RPDSIFFNALINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQR 205

Query: 178 IYKEMTDNG------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
           ++  M   G      + PN  TY  L++A+  A   E+   V   M+  G    V  YNT
Sbjct: 206 VFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNT 265

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLE 290
           L +  A    T  A E+  +M      +    T+  +I    CR G++ EA     +M +
Sbjct: 266 LASAYAKNDETWRAEELVVEMAQQAGLRTSERTW-GIIVGGYCREGRLGEALRCVRQMKD 324

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 350
           +G  PN+ V  +L++ +  A     V   L  + + GI PD       LN ++      +
Sbjct: 325 SGVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALS-----SM 379

Query: 351 GKLVECVE 358
           G + +C++
Sbjct: 380 GHMAKCMK 387



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 88/177 (49%), Gaps = 3/177 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TL+K +  A +     +V   M+  G+KP+++TY++ L+ +       +   +
Sbjct: 329 PNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKV 388

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + +M + G+ P+   Y+ L + Y RA+  E    + R+M   G++ +V  + T+++    
Sbjct: 389 FDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWCS 448

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           V     A  ++  M+ +   +P+  TF ++I   S   +  +AE +   M +AG  P
Sbjct: 449 VADMGNAVRVYAAMRDA-GVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRP 504



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +I     +  M  A+RP Q  + ++ + D+G  P+  TY +LL A    R  +    +  
Sbjct: 79  VIARTRQMRAMIDARRPHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLA 138

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           E+++ G++     +N L+    +     EA   F  M  S  C+P + TF+++I      
Sbjct: 139 EVEDAGLRPDSIFFNALINALVEARRMGEATNTFLRMGHS-GCRPTASTFNTLIKGYGIA 197

Query: 276 GKVSEAEAMFNEM------LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           G+  E++ +F+ M       EA   PNL     L++ +  A R ++  R + R+   G  
Sbjct: 198 GRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGAD 257

Query: 330 PD 331
           PD
Sbjct: 258 PD 259



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 1/223 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           + + A+    R     +  ++  Y   G     L    +MK  GV PN+I +N LL    
Sbjct: 283 VVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFL 342

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            A     V  +   M   G+ P+  TY+  L A     +    + V+ +M E G++    
Sbjct: 343 DANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQ 402

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
           +Y+ L          ++A E+   M      +P+  TF+++I+       +  A  ++  
Sbjct: 403 VYSILAKGYVRAQQPEKAEELLRQM-GRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAA 461

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           M +AG  PNL    +LI  Y + ++       L  + + G+ P
Sbjct: 462 MRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRP 504



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 97/218 (44%), Gaps = 14/218 (6%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G +P+++TY  LL  +   +    +  +  E+ D GL P+   + +L+ A   AR   + 
Sbjct: 109 GHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALVEARRMGEA 168

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-----KSSENCQPDSWTF 265
            + +  M   G + + + +NTL+      G  +E+  +F+ M           +P+  T+
Sbjct: 169 TNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTY 228

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           + ++      G++ EA  +   M  +G +P++    +L   Y K    D+  RA   + E
Sbjct: 229 NILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAK---NDETWRAEELVVE 285

Query: 326 L----GITPDDRFCGCLLNVMTQTPKEELGKLVECVEK 359
           +    G+   +R  G ++    +  +  LG+ + CV +
Sbjct: 286 MAQQAGLRTSERTWGIIVGGYCREGR--LGEALRCVRQ 321



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G++     ++D+        DP  +S L K Y  A   +    +  +M  +GV+PN++T+
Sbjct: 380 GHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTF 439

Query: 160 NNLLD------TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
             ++        MG A R      +Y  M D G+ PN  T+ +L+  Y   +       V
Sbjct: 440 TTVISGWCSVADMGNAVR------VYAAMRDAGVRPNLRTFETLIWGYSELKQPWKAEEV 493

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
            + M++ G++   T Y  +      VG  + A
Sbjct: 494 LQMMQDAGVRPKQTTYCLVADAWKAVGLVENA 525


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 110/216 (50%), Gaps = 3/216 (1%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +I+PN   F++LI  +   G       +++EM    + PN++TYN+L++      R  + 
Sbjct: 321 KINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEA 380

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + I+  M      P+  TY +L++ + +A+  E+ + ++REM ++G+  +   YNTL+  
Sbjct: 381 QQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 440

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G  D A +IF+ M  S+   PD  T+S ++      GK+ +A  +F  + ++  EP
Sbjct: 441 LFQAGDCDMAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 499

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           N++    +I+   KA + +D       L   G+ P+
Sbjct: 500 NIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 535



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 132/267 (49%), Gaps = 8/267 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G++++A  L  +   EK +I+ N   ++T+I       + D   +++ +M+  G+KP+
Sbjct: 233 KRGDIDLALSLLKKM--EKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 290

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TYN+L+  +    R      +  +M +  ++PN  T+ SL+ A+ +     +   ++ 
Sbjct: 291 VFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 350

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSC 274
           EM ++ +  ++  YN+L+         DEA +IF  M  S++C PD  T++++I   C  
Sbjct: 351 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM-VSKDCLPDVVTYNTLIKGFCKA 409

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           + +V E   +F EM + G   N     +LIQ   +A   D   +   ++   G+ PD   
Sbjct: 410 K-RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIIT 468

Query: 335 CGCLLNVMTQTPKEELGKLV-ECVEKS 360
              LL+ + +  K E   +V E ++KS
Sbjct: 469 YSILLDGLCKYGKLEKALVVFEYLQKS 495



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 115/235 (48%), Gaps = 3/235 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   + +A  +  +     +  D    S+L+  Y         + + ++M  +G KP+ +
Sbjct: 128 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTV 187

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N L+  +    +  +   +   M   G  P+  TY +++    +    +  LS+ ++M
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 247

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-G 276
           ++  ++ +V +YNT++       + D+AF++F  M+ ++  +PD +T++S+I+ C C  G
Sbjct: 248 EKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKME-TKGIKPDVFTYNSLIS-CLCNYG 305

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + S+A  + ++M+E    PN+    SLI  + K  +  +  +  + + +  I P+
Sbjct: 306 RWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 360



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           FS L+        FD  +++ E+M+ +G+  N  TY+ LL+   R  +      +  +M 
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMM 143

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G  P+  T +SLL  Y   +   + +++  +M E G +     +NTL+          
Sbjct: 144 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKAS 203

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  + + M  +  CQPD +T+ +++     RG +  A ++  +M +   E N+ +  ++
Sbjct: 204 EAVALIDRM-VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTI 262

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLLN 340
           I    K +  DD     N++   GI PD    +    CL N
Sbjct: 263 IDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCN 303



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 99/188 (52%), Gaps = 5/188 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLIK +  A   +  + ++ EM   G+  N +TYN L+  + +A      + I+
Sbjct: 395 DVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 454

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           K+M  +G+ P+  TY+ LL   G  +YG  E  L V+  +++  M+ ++  YN ++    
Sbjct: 455 KKMVSDGVPPDIITYSILLD--GLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMC 512

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  ++ +++F  + S +  +P+   +++MI+    +G   EA+A+F EM E G  P+ 
Sbjct: 513 KAGKVEDGWDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDS 571

Query: 298 FVLTSLIQ 305
               +LI+
Sbjct: 572 GCYNTLIR 579



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 96/196 (48%), Gaps = 1/196 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  VE    L+          +   ++TLI+    AG+ D    ++++M + GV P++I
Sbjct: 408 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 467

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ LLD + +  +  +   +++ +  + + PN  TY  ++    +A   ED   ++  +
Sbjct: 468 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             KG++ +V +Y T+++     G  +EA  +F +MK  +   PDS  ++++I      G 
Sbjct: 528 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK-EDGTLPDSGCYNTLIRARLRDGD 586

Query: 278 VSEAEAMFNEMLEAGF 293
            + +  +  EM   GF
Sbjct: 587 KAASAELIKEMRSCGF 602



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPN 155
           + G +E A  +++    +K +++PN ++  I + G   AG  +   +++  +   GVKPN
Sbjct: 478 KYGKLEKALVVFEYL--QKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 535

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--V 213
           +I Y  ++    R     +   +++EM ++G  P+   Y +L+RA  R R G+   S  +
Sbjct: 536 VIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRA--RLRDGDKAASAEL 593

Query: 214 YREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM+  G     +  + ++ M  D
Sbjct: 594 IKEMRSCGFVGDASTISMVINMLHD 618


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 117/260 (45%), Gaps = 3/260 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GN++ A  +  + + E+ R     F  +I  +  AG     L +++ M+  G  P + TY
Sbjct: 543 GNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTY 602

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+  +   ++  +   I  EM   G+ PN +TY +L++ Y      E     +  ++ 
Sbjct: 603 NALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRN 662

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+++ V  Y  LL  C   G    A  + ++M S++N   +++ ++ +I   + RG V 
Sbjct: 663 EGLEIDVYTYEALLKSCCKSGRMQSALAVTKEM-SAKNIPRNTFVYNILIDGWARRGDVW 721

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA  +  +M + G  P++   TS I    KA         +  +   GI P+ +    L+
Sbjct: 722 EAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLI 781

Query: 340 NVMTQTPKEELGKLVECVEK 359
           N   +    E  K + C E+
Sbjct: 782 NGWARASMPE--KALSCFEE 799



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 153/341 (44%), Gaps = 10/341 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T  GN E    ++DR +   +     ++  LI LY   G     L + + MK  G+K NM
Sbjct: 435 TMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNM 494

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY+ L++   + K      +++++ T +GL P+   Y +++ A+      +  + + R+
Sbjct: 495 KTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQ 554

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+++  + +   +  ++   A  G    A EIF+ M+ S  C P   T++++I     + 
Sbjct: 555 MQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRS-GCIPTVHTYNALILGLVEKR 613

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++++A A+ +EM  AG  PN    T+L+Q Y     T+   +    L   G+  D     
Sbjct: 614 QMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYE 673

Query: 337 CLLNVMTQTPKEE--LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
            LL    ++ + +  L    E   K+  +  +V  +L++     GD   EA +L   + K
Sbjct: 674 ALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDV-WEAADLMQQMRK 732

Query: 395 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 435
           +        L D+    + +   CK  ++    E+  ++++
Sbjct: 733 E------GLLPDIHTYTSFINACCKAGDMQKATEIIQEMEA 767



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 130/301 (43%), Gaps = 26/301 (8%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           N+   +  +E +K    KP    Y  ++   GR       +  ++ M   G+ P+ + Y+
Sbjct: 268 NWQAVVTAFERIK----KPARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYS 323

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS- 254
           SL+ AY   R  E+ L   R+MKE+G+++++  Y+ ++   A +G  D A   FE+ K  
Sbjct: 324 SLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEK 383

Query: 255 --SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
             S N         +   IC+    +  AEA+  EM E G +  + +  +++  Y     
Sbjct: 384 LPSLNAVIYGGIIYAHCQICN----MDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGN 439

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE----ELGKLVEC--VEKSNSKLGY 366
            +  +   +RL E G  P     GCL+N+ T+  K     E+ K+++   ++ +      
Sbjct: 440 EEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSM 499

Query: 367 VVKLLLEEQDIEGDFKKEATELFNSISKDVKKA----YCNCLIDLCVNLNLLENACKLLE 422
           ++   L+ +D    F      +F   +KD  K     Y N +   C   N+    C + +
Sbjct: 500 LINGFLKLKDWANAFS-----VFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQ 554

Query: 423 L 423
           +
Sbjct: 555 M 555



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 13/258 (5%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+ E AF  +   RNE   ID   +  L+K    +G     L V +EM A  +  N   Y
Sbjct: 648 GDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVY 707

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   R    W+   + ++M   GL P+ +TY S + A  +A   +    + +EM+ 
Sbjct: 708 NILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEA 767

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++ ++  Y TL+   A     ++A   FE+MK +   +PD   +  ++T    R   +
Sbjct: 768 SGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLA-GFKPDKAVYHCLVTSLLSRATFA 826

Query: 280 EAE------AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT-DDVVRALNRLPELGITPDD 332
           ++       ++  EM+E+    ++       +C  K +RT  ++  AL +       P D
Sbjct: 827 QSYVYSGLLSVCREMIESEMIVDMGTAVHWSRCLRKIERTGGELTEALQK-----TFPPD 881

Query: 333 RFCGCLLNVMTQTPKEEL 350
                +L+V ++T   +L
Sbjct: 882 WTSHNVLDVNSETETADL 899



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+V  A  L  + R E    D + +++ I     AG+      + +EM+A G+KPN+ 
Sbjct: 716 RRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLK 775

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGED-----TL 211
           TY  L++   RA  P +  + ++EM   G  P+   Y  L+ +   RA + +       L
Sbjct: 776 TYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCLVTSLLSRATFAQSYVYSGLL 835

Query: 212 SVYREMKEKGM 222
           SV REM E  M
Sbjct: 836 SVCREMIESEM 846


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 2/182 (1%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G + ++ TYN  LD + +A         +++M   G  P+  TY+ +LR   +A   +  
Sbjct: 33  GYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKA 92

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             +  +++E G++L+V  Y+ ++  C      D+A EIF+ M +   C PD  TF+S++ 
Sbjct: 93  KELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLK 152

Query: 271 -ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            +CS   ++SEA  +F  M +AG EPN+   ++L+    KA R D+  R    + E    
Sbjct: 153 GLCSGE-RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCV 211

Query: 330 PD 331
           PD
Sbjct: 212 PD 213



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 4/200 (2%)

Query: 108 LYDRARNEK-WRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           L+ R ++ K +   PN   ++ ++     A   D    +  EM   G+ P+++TY+ L+D
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +  +  +   + +EM+  G+ P+  T AS+L A  +A   +  LS    MK +G   
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            +  YNTLL      G  DEA      M +++ C PD ++++ +IT     G+ + A A+
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK-CTPDVFSYTIIITALCRSGQAAGAHAI 501

Query: 285 FNEMLEAGFEPNLFVLTSLI 304
           F EM++ G  P+  +  SL+
Sbjct: 502 FQEMVKRGVLPDTVLYHSLL 521



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 13/217 (5%)

Query: 106 FGLYDRARN-----EKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G  DRA +      K  + P++F  ++++     AG  D  L+  E MKA G  P+++T
Sbjct: 387 LGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVT 446

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN LLD + +A R  +  T   +M     +P+  +Y  ++ A  R+       ++++EM 
Sbjct: 447 YNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMV 506

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
           ++G+     LY++LL   A  G  D A E+ +    +  C+PD +    M+    C+ GK
Sbjct: 507 KRGVLPDTVLYHSLLDGLARNGLEDLALELLK----TSLCKPD-FVMHKMVVDGLCKAGK 561

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
             +A  +   M +AGF  + F   ++++   K  + D
Sbjct: 562 AEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVD 598



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 100/209 (47%), Gaps = 2/209 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            +A   ++A+  + + +   +  D   +S +++    AG  D    +  +++  GVK N+
Sbjct: 49  AKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNV 108

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMT-DNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ITY+ ++D   +A R      I+K M+   G  P+  T+ SLL+         +   ++ 
Sbjct: 109 ITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFE 168

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M + G + +V  Y+TLL      G  DEA  ++E+M   ++C PD   ++S +T     
Sbjct: 169 YMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEM-VEKSCVPDLVAYTSFVTGLCKA 227

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
            +V+EA     +M+  G + +    +++I
Sbjct: 228 NRVAEACDCCRKMVTKGSKADAVAFSTVI 256



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F++L+K   +         ++E M   G +PN+I+Y+ LLD + +A R  +   ++
Sbjct: 143 DVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLW 202

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           +EM +    P+   Y S +    +A    +     R+M  KG +     ++T++ +    
Sbjct: 203 EEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKK 262

Query: 240 GYT-----------------DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           G+                  DEA + FE+M  S N  P +  F+++I       ++ +  
Sbjct: 263 GHAEEAQNQMIEHLCRSGMLDEACKTFEEM-ISRNHPPSAELFNTLIHAVCKSKRLPDGV 321

Query: 283 AMFNE---MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            +F     M E    PNL     ++    KA++ D+    +N +   G++PD      L+
Sbjct: 322 LLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALV 381

Query: 340 NVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE--LFNSISKDVK 397
           + + +     LGKL    +            LLEE   EG F    T+  + N++SK  K
Sbjct: 382 DGLCK-----LGKLDRACD------------LLEEMSKEGVFPDSFTDASILNALSKAGK 424

Query: 398 KAY 400
             Y
Sbjct: 425 VDY 427



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 4/212 (1%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY--- 179
           A + +I+    +G  D     +EEM +    P+   +N L+  + ++KR      ++   
Sbjct: 268 AQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRM 327

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           K M +    PN  TY  ++    +A+  ++   +  EM   G+   V  Y+ L+     +
Sbjct: 328 KSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKL 387

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A ++ E+M S E   PDS+T +S++   S  GKV  A +    M   G  P+L  
Sbjct: 388 GKLDRACDLLEEM-SKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVT 446

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +L+    KA R D+ +  L ++     TPD
Sbjct: 447 YNTLLDGLCKAGRIDEAITFLAKMVAAKCTPD 478



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 109/232 (46%), Gaps = 6/232 (2%)

Query: 124 FSTLIKLYGTAGNF-DGCLNVYEEMKAIG---VKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           F+TLI     +    DG L +++ MK++      PN+ TYN ++D + +AK+  + + + 
Sbjct: 304 FNTLIHAVCKSKRLPDGVL-LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM + GLSP+  TY++L+    +    +    +  EM ++G+        ++L   +  
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A    E MK+  +  PD  T+++++      G++ EA     +M+ A   P++F 
Sbjct: 423 GKVDYALSHLETMKARGS-TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFS 481

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
            T +I    ++ +          + + G+ PD      LL+ + +   E+L 
Sbjct: 482 YTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLA 533



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 19/247 (7%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM 156
           +AG ++ A  L  + R    +++   +S +I     A   D  L +++ M A G   P++
Sbjct: 85  KAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDV 144

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+N+LL  +   +R  +   +++ M   G  PN  +Y++LL    +A   ++   ++ E
Sbjct: 145 VTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEE 204

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CS-- 273
           M EK     +  Y + +          EA +    M  ++  + D+  FS++I I C   
Sbjct: 205 MVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKM-VTKGSKADAVAFSTVIGILCKKG 263

Query: 274 -------------CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
                        CR G + EA   F EM+     P+  +  +LI    K++R  D V  
Sbjct: 264 HAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLL 323

Query: 320 LNRLPEL 326
             R+  +
Sbjct: 324 FQRMKSM 330



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 4/194 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG V+ A    +  +      D   ++TL+     AG  D  +    +M A    P++
Sbjct: 420 SKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDV 479

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +Y  ++  + R+ +      I++EM   G+ P+   Y SLL   G AR G + L++   
Sbjct: 480 FSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLD--GLARNGLEDLAL-EL 536

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +K    +    ++  ++      G  ++A E+ E M  +     D++T+ +++      G
Sbjct: 537 LKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADA-GFPADAFTYINVVRGLRKLG 595

Query: 277 KVSEAEAMFNEMLE 290
           KV +A  + ++  E
Sbjct: 596 KVDKARQLVDDASE 609



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++KG Q SV  YN  L   A       A+E F+ M+      PD +T+S ++      G+
Sbjct: 30  RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQ-RRGYPPDDFTYSIVLRGLCKAGE 88

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +A+ +  ++ E+G + N+   + +I    KA R DD +     +   G        GC
Sbjct: 89  LDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGG--------GC 140

Query: 338 LLNVMT 343
           + +V+T
Sbjct: 141 VPDVVT 146


>gi|224081867|ref|XP_002306508.1| predicted protein [Populus trichocarpa]
 gi|222855957|gb|EEE93504.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 114/229 (49%), Gaps = 4/229 (1%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ +++ +   G +  C   +EEM    V  ++ +Y+  +D + ++ +PW+   +YKEM 
Sbjct: 191 YNMILRGWFKMGWWGKCREFWEEMDRKEVCKDLHSYSIYMDILCKSGKPWKAVKLYKEMK 250

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+  +   Y +++ A G +   +  L VYREM+E G Q +V   NT++ +  + G   
Sbjct: 251 SKGIKLDVVAYNTVINAIGLSEGVDFVLRVYREMRELGCQPNVVTCNTVIKLLCENGRIK 310

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA+++ ++M  S    PD +T+        C  K  E   +F++M+E G  P +     L
Sbjct: 311 EAYKMLDEMPQS-YIAPDVFTYHCFF---RCLEKPKEILCLFDQMIENGVCPRMDTYVML 366

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
           ++ +G+      V     ++ +LG +PD+     L++ + Q    ++ +
Sbjct: 367 MRKFGRWGFLRPVFLVWKKMEKLGCSPDEFAYNALIDALIQKGMVDMAR 415



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 4/196 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G    A  LY   +++  ++D  A++T+I   G +   D  L VY EM+ +G +PN++
Sbjct: 235 KSGKPWKAVKLYKEMKSKGIKLDVVAYNTVINAIGLSEGVDFVLRVYREMRELGCQPNVV 294

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N ++  +    R  +   +  EM  + ++P+  TY    R   + +   + L ++ +M
Sbjct: 295 TCNTVIKLLCENGRIKEAYKMLDEMPQSYIAPDVFTYHCFFRCLEKPK---EILCLFDQM 351

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+   +  Y  L+      G+    F +++ M+    C PD + ++++I     +G 
Sbjct: 352 IENGVCPRMDTYVMLMRKFGRWGFLRPVFLVWKKMEKL-GCSPDEFAYNALIDALIQKGM 410

Query: 278 VSEAEAMFNEMLEAGF 293
           V  A     EM+  G 
Sbjct: 411 VDMARKYDEEMMAKGL 426


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +  + F  +++ Y  A      +  +E+M + G+K ++  YN L+D + ++K+  +   I
Sbjct: 193 LSKDTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAI 252

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +KEM  NG   P+  TY  L+  +G  +      SVY+EM + G++  V  Y TL++   
Sbjct: 253 FKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFC 312

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  DEA ++F +M+++  C P    +  +I       ++ EA   F     +GF   +
Sbjct: 313 KSGKCDEAIKVFREMEAN-GCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEV 371

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
               +++  Y ++ +     + ++ + + GI P+ R    +L  + ++ K E
Sbjct: 372 PTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIE 423



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 113/245 (46%), Gaps = 2/245 (0%)

Query: 97  TRAGNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +++  V+ A  ++ +  RN ++  D   ++ L++ +G   +     +VY+EM   G+KP+
Sbjct: 241 SKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPD 300

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ Y  L+ +  ++ +  +   +++EM  NG  P+ + Y  L+   G     ++ L  + 
Sbjct: 301 VVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFE 360

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
             K  G  + V   N ++           AF++ ++M+ +    P++ T+  ++      
Sbjct: 361 LSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKT-GIGPNARTYDIILQYLIKS 419

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            K+ EA  +F  M   G EP L   T ++  +   +R D  ++   ++ E G+ P     
Sbjct: 420 QKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMF 479

Query: 336 GCLLN 340
             L+N
Sbjct: 480 SSLIN 484



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 1/175 (0%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P+ +  LI   G+    D  L  +E  KA G    + T N ++    R+ +      +  
Sbjct: 336 PHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVD 395

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM   G+ PN  TY  +L+   +++  E+  +V++ M  +G +  +  Y  ++ M     
Sbjct: 396 EMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNE 455

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
             D A ++++ MK  +   P    FSS+I       ++ EA   F EML+ G  P
Sbjct: 456 RVDMALKVWKQMKE-KGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRP 509



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           + ++  Y  +  F     + +EM+  G+ PN  TY+ +L  + ++++  +   +++ M  
Sbjct: 375 NAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGM 434

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
            G  P  NTY  ++  +      +  L V+++MKEKG+   + ++++L+         +E
Sbjct: 435 EGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEE 494

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           A   F++M   +  +P    FS++       G++S A+ M
Sbjct: 495 ACVYFQEM-LDKGIRPPGQLFSNLKEALIEGGRISLAQDM 533



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  ++  +E A+ ++ R   E      N ++ ++ ++ +    D  L V+++MK  GV P
Sbjct: 415 YLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLP 474

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGED 209
            M  +++L++ +    R  +    ++EM D G+ P    +++L  A    GR    +D
Sbjct: 475 CMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALIEGGRISLAQD 532



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 4/137 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R+   + AF + D  R  K  I PNA  +  +++    +   +   NV++ M   G +P 
Sbjct: 383 RSSKFQHAFKMVDEMR--KTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQ 440

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY  ++      +R      ++K+M + G+ P  + ++SL+         E+    ++
Sbjct: 441 LNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQ 500

Query: 216 EMKEKGMQLSVTLYNTL 232
           EM +KG++    L++ L
Sbjct: 501 EMLDKGIRPPGQLFSNL 517


>gi|125528270|gb|EAY76384.1| hypothetical protein OsI_04314 [Oryza sativa Indica Group]
          Length = 665

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 112/227 (49%), Gaps = 15/227 (6%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIG----------VKPNMITYNNLLDTMGRAKRPW 173
           ++T++++YG AG F   ++++  M++            +KPN++TYN ++   G++    
Sbjct: 344 YNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDE 403

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +  ++ ++M  NG+ PN  TY+++L  + +A   +    ++ +++E G ++   LY T++
Sbjct: 404 KAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMV 463

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G   ++  +  D+K SE+   +     + I I +  G+V EA  +F    +AG 
Sbjct: 464 VAYERAGLVSQSKRLLHDLKDSEDVPKE-----TAIKILANAGRVEEAAWLFRRAADAGD 518

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +  V   +I  + K++R   V+   + + + G  PD       +N
Sbjct: 519 VRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKAGSLPDSETIAITMN 565



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 12/246 (4%)

Query: 98  RAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNF-DGCLNVYEEMKAIGVKPN 155
           R G+   A  L+ R R     + D  A++  I  Y  +    D    +  +M + GV P+
Sbjct: 210 RGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLHDMPSDGVAPD 269

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
             +Y+ +L  + R  R     +++  M T   + P+ + +  +L AYG+     +   ++
Sbjct: 270 AESYSPILAALARRGRHLAAVSLFTHMRTVARVKPDLSVFNIVLNAYGQLDLAREADRLF 329

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---------CQPDSWTF 265
             M+  G+  SV  YNT+L +  D G   EA  +F  M+S+ +          +P+  T+
Sbjct: 330 WSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTY 389

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++MI I     +  +A ++  +M   G +PN    ++++  + KA + D   +   +L E
Sbjct: 390 NTMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLRE 449

Query: 326 LGITPD 331
            G   D
Sbjct: 450 AGTEID 455



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 2/215 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG + +A GL    R+     D  ++STL+     AG+ D  L     M+   V P+++
Sbjct: 140 RAGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLV 199

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDT-LSVYR 215
            ++NL+    R     +   ++  +    G+ P+   Y + + AY ++    D    +  
Sbjct: 200 LFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLH 259

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+      Y+ +LA  A  G    A  +F  M++    +PD   F+ ++      
Sbjct: 260 DMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRTVARVKPDLSVFNIVLNAYGQL 319

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
               EA+ +F  M  AG  P++    ++++ YG A
Sbjct: 320 DLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDA 354



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 128/291 (43%), Gaps = 25/291 (8%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPN 155
           TRAG+++ A        ++    D   FS LI L    G+    L ++  ++ A G+KP+
Sbjct: 174 TRAGHLDHALTFLPLMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPD 233

Query: 156 MITYNNLL------DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           +  YN  +      D +  A R      +  +M  +G++P+  +Y+ +L A  R      
Sbjct: 234 LKAYNAAIAAYCKSDLLRDANR-----LLLHDMPSDGVAPDAESYSPILAALARRGRHLA 288

Query: 210 TLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            +S++  M+    ++  ++++N +L     +    EA  +F  M+ +    P   T+++M
Sbjct: 289 AVSLFTHMRTVARVKPDLSVFNIVLNAYGQLDLAREADRLFWSMRRA-GVAPSVVTYNTM 347

Query: 269 ITICSCRGKVSEAEAMFNEMLEAG----------FEPNLFVLTSLIQCYGKAQRTDDVVR 318
           + +    G   EA  +F  M  A            +PN+    ++I  YGK+   +    
Sbjct: 348 LRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDEKAGS 407

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 368
            +  +   GI P+      +L++  +  K +  GKL E + ++ +++  V+
Sbjct: 408 LVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVL 458



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 41/205 (20%)

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +I YN LL +  RA        +  EM D G++P+  +Y++LL A  RA + +  L+   
Sbjct: 128 LIPYNLLLRSACRAGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLP 187

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE----------DMKS----------- 254
            M++  +   + L++ L+ +    G   +A  +F           D+K+           
Sbjct: 188 LMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKS 247

Query: 255 ---------------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLF 298
                          S+   PD+ ++S ++   + RG+   A ++F  M   A  +P+L 
Sbjct: 248 DLLRDANRLLLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRTVARVKPDLS 307

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRL 323
           V   ++  YG+     D+ R  +RL
Sbjct: 308 VFNIVLNAYGQL----DLAREADRL 328



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 31/171 (18%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-------- 148
            +AG ++ A  L+++ R     IDP  + T++  Y  AG       +  ++K        
Sbjct: 432 VKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSEDVPKE 491

Query: 149 -AIGVKPNM----------------------ITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
            AI +  N                         Y  ++D   +++R   V  ++ EM   
Sbjct: 492 TAIKILANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKA 551

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           G  P+  T A  + A+G+ +  +   ++YR M+E+G   S  ++  ++++ 
Sbjct: 552 GSLPDSETIAITMNAHGKLKEFDKAAALYRAMREEGCVFSDRVHFQMVSLL 602


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 151/328 (46%), Gaps = 28/328 (8%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +A + LIK +G  G  +  L V+ +MK  G++P + TYN L++ +  A      + +++ 
Sbjct: 188 SAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEV 247

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M    + P+  TY ++++ Y +A   +  +   R+M+ +G +     Y T++  C    Y
Sbjct: 248 MESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC----Y 303

Query: 242 TDEAF----EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            D  F     ++++M   +  Q     FS +I      GK++E   +F  M+  G +PN+
Sbjct: 304 ADSDFGSCVALYQEM-DEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNV 362

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
            + T LI  Y K+   +D +R L+R+ + G  PD      ++N + +      G++ E +
Sbjct: 363 AIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN-----GRVEEAL 417

Query: 358 EKSNSKL--GYVVKLLLEEQDIEGDFK----KEATELFNSISKD--VKKAYC-NCLIDLC 408
           +  ++    G  +  +     I+G  K     EA  LF  +S+    + +YC N LID  
Sbjct: 418 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477

Query: 409 VNLNLLENACKLL-----ELGLTLEVYT 431
                ++ A  L      E G    VYT
Sbjct: 478 TKHRKVDEAIALFKRMEEEEGCDQTVYT 505



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 2/225 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
            LY     +  ++ P+AFS +I      G  +    V+E M   G KPN+  Y  L+D  
Sbjct: 313 ALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGY 372

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            ++        +   M D G  P+  TY+ ++    +    E+ L  +   +  G+ ++ 
Sbjct: 373 AKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINS 432

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y++L+      G  DEA  +FE+M S + C  DS+ ++++I   +   KV EA A+F 
Sbjct: 433 MFYSSLIDGLGKAGRVDEAERLFEEM-SEKGCTRDSYCYNALIDAFTKHRKVDEAIALFK 491

Query: 287 EM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            M  E G +  ++  T L+    K  R ++ ++  + + + GITP
Sbjct: 492 RMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITP 536



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 3/235 (1%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E  RI P+   ++T+IK Y  AG     +    +M+  G + + ITY  ++         
Sbjct: 249 ESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDF 308

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                +Y+EM + G+    + ++ ++    +     +  +V+  M  KG + +V +Y  L
Sbjct: 309 GSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVL 368

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +   A  G  ++A  +   M   E  +PD  T+S ++      G+V EA   F+     G
Sbjct: 369 IDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG 427

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
              N    +SLI   GKA R D+  R    + E G T D      L++  T+  K
Sbjct: 428 LAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRK 482



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 97/213 (45%), Gaps = 2/213 (0%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ LI  Y  +G+ +  + +   M   G KP+++TY+ +++ + +  R  +    
Sbjct: 360 PNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 419

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +     +GL+ N   Y+SL+   G+A   ++   ++ EM EKG       YN L+     
Sbjct: 420 FHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 479

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               DEA  +F+ M+  E C    +T++ +++      +  EA  +++ M++ G  P   
Sbjct: 480 HRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAA 539

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +L      + +     + L+ L  +G+  D
Sbjct: 540 CFRALSTGLCLSGKVARACKILDELAPMGVILD 572


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 104/238 (43%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           SY    G  E A+ +           D   +++LI L  + G      +V++ M   G  
Sbjct: 546 SYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCA 605

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P+ +TY  ++    +         I + M  +G+ P+   Y SL+  Y +    +    V
Sbjct: 606 PDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGV 665

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           Y  M   G++ +   +N L+      G TD AF +F++M   +   P   +++ +I    
Sbjct: 666 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLG 725

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             G+VSEA + F EM++ G  P     TSLI    KA R  +  + +  + +LG+ PD
Sbjct: 726 KAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 783



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 107 GLYDRARNEKWR------IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           GLYD  R E+ +      +D  +++T+IK    +   D    ++E++K  G  PN++ Y 
Sbjct: 343 GLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYT 402

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            ++D + +A R       +++M+ +   P   TY  ++    +A+   D   V+ +M +K
Sbjct: 403 AVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQK 462

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G       Y TL+   +     DEA ++  D+  ++  +P + T+ S++        ++E
Sbjct: 463 GCVPDTITYTTLIDGFSKASKMDEARKLL-DVMLTKGPEPTAVTYGSIVHGFCKLDMINE 521

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A+ +  +M E G EP LF+ TSL+  Y    R ++  + L  +   G  PD      L++
Sbjct: 522 AKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLID 581

Query: 341 VMTQTPK 347
           ++  T +
Sbjct: 582 LLFSTGR 588



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI  +  A   D    + + M   G +P  +TY +++    +     + K + 
Sbjct: 467 DTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVI 526

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M + G  P    + SLL  Y      E+   V  EM  +G    V LY +L+ +    
Sbjct: 527 AQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFST 586

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA  +F+ M   + C PD+ T+ ++I   S  G V  A  +   M ++G  P+ F 
Sbjct: 587 GRVPEARHVFDSM-IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFA 645

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SL+  Y K +R D      +R+   GI P+
Sbjct: 646 YNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 677



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 37/231 (16%)

Query: 121 PNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           P+  +  I L G   A   D  + ++ EM ++G +P +++YN ++  +    +  +    
Sbjct: 18  PDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKF 77

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRA---------------RYGEDT------------- 210
           +  M DNG  P+   + +L+  + +A               R+  D              
Sbjct: 78  FNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCKA 137

Query: 211 ------LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
                   +  EM   G       Y  L+     +G  DEA+E+FE M+ S  C  D  T
Sbjct: 138 GDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKS-GCLGDYVT 196

Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           F ++I   S  GK+ EA  ++ EM+E G+EP L V  SLI    KA + D+
Sbjct: 197 FMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDE 247



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 2/221 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ GNVE A  + +         D  A+++L+  Y      D    VY+ M A G+KPN 
Sbjct: 619 SKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNA 678

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +T+N L+  + +  +  +  +++KEM + + + P   +Y  L+   G+A    +  S ++
Sbjct: 679 VTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQ 738

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM ++G+      Y +L+   A  G   EA ++ EDM       PD   +S++IT     
Sbjct: 739 EMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM-VKLGVNPDVQAYSALITGLIDS 797

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             V  A  +F EM++ G  PN      L + +  A R  D+
Sbjct: 798 SMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDL 838



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 117/261 (44%), Gaps = 2/261 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++ A  L+++ +      +  A++ +I     AG  +  L  +E+M      P   TY  
Sbjct: 379 IDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTV 438

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++D + +A+       ++++M   G  P+  TY +L+  + +A   ++   +   M  KG
Sbjct: 439 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 498

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            + +   Y +++     +   +EA E+   M+    C+P  + F+S+++    +G+  EA
Sbjct: 499 PEPTAVTYGSIVHGFCKLDMINEAKEVIAQMR-ERGCEPGLFIFTSLLSYYLSKGRAEEA 557

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
             +  EM   G  P++ + TSLI       R  +     + + E G  PD    G ++  
Sbjct: 558 YQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQN 617

Query: 342 MTQTPK-EELGKLVECVEKSN 361
            ++    E  G+++E + KS 
Sbjct: 618 FSKIGNVEAAGEILELMAKSG 638



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 110/234 (47%), Gaps = 2/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  ++   L ++A  +++R D   ++++I  Y  AG+ D    + EEM A G  P+  
Sbjct: 102 KAGQPQVGHMLLNQAL-KRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAA 160

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D + +  R  +   +++ M  +G   ++ T+ +L+ A       ++   +YREM
Sbjct: 161 AYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREM 220

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E+G +  + + ++L+      G  DEA EI++ + + +         S M   C   G+
Sbjct: 221 IERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKL-GR 279

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V +   +  +M+E    P++     L+  + +A R DD +     L   G  P+
Sbjct: 280 VDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPN 333



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 94/186 (50%), Gaps = 6/186 (3%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEM-KAIGVKPNMIT 158
           V+ AFG+YDR       I PNA +  + ++G    G  D   ++++EM +   V P +++
Sbjct: 659 VDQAFGVYDRMVASG--IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVS 716

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+D +G+A R  +  + ++EM D G+ P  +TY SL+ +  +A    +   +  +M 
Sbjct: 717 YTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMV 776

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G+   V  Y+ L+    D    D A+++F++M     C P+  T+  +       G+ 
Sbjct: 777 KLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMM-KRGCAPNEVTYKVLRRGFRAAGRA 835

Query: 279 SEAEAM 284
            + EA+
Sbjct: 836 LDLEAV 841



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 121/273 (44%), Gaps = 9/273 (3%)

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KEM   GL P+      +L    +AR  +  + ++ EM   G + ++  YNT+++  A +
Sbjct: 9   KEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASI 68

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              DEA++ F  M  +  C+PD   F+++I      G+      + N+ L+  F P++F+
Sbjct: 69  DKMDEAYKFFNSMIDN-GCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFL 126

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358
            TS+I  Y KA   D   + L  +   G  PD      L++ + +  + +E  +L E + 
Sbjct: 127 YTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMR 186

Query: 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENAC 418
           KS     YV  + L E         EA EL+  + +   + Y      L V  +L+   C
Sbjct: 187 KSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPY------LEVQDSLIFALC 240

Query: 419 KLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLG 451
           K  ++    E+Y  + ++      +   SL  G
Sbjct: 241 KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDG 273



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           E+ L   +EM   G+   V   N +L         D+A E+F +M S   C+P   ++++
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSM-GCEPTIVSYNT 60

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           +I+  +   K+ EA   FN M++ G EP++   T+LI  + KA
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKA 103


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           EK  +DP+   F+TLI  YG AG  + C  V  +M+  G+K N+I++ +++    +  + 
Sbjct: 432 EKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKI 491

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
            +   I  +M    + PN   Y S++ AY  +   E    +  +MK  G+  S+  YN L
Sbjct: 492 PEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLL 551

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           L         DEA E+  ++ +++  +PD  +++++I+ C  +G    A  +  EM +  
Sbjct: 552 LKGLCKNSQIDEAEELIYNL-TNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYD 610

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDV 316
             P L     L+   G A R  D+
Sbjct: 611 IRPTLRTYHPLLSALGSAGRVHDM 634



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 108/208 (51%), Gaps = 1/208 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++TLI  Y    +  G  +++E+MK+  ++P+ ITYN L++ + + +   + + +  EM 
Sbjct: 373 YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEME 432

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G+ P+  T+ +L+ AYGRA   E   +V  +M++KG++ +V  + +++      G   
Sbjct: 433 KSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIP 492

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA  I +DM   ++  P++  ++S+I      G   +A  +  +M  +G   ++F    L
Sbjct: 493 EAVAILDDM-IHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLL 551

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++   K  + D+    +  L   G+ PD
Sbjct: 552 LKGLCKNSQIDEAEELIYNLTNQGLRPD 579



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 117/266 (43%), Gaps = 36/266 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R+G    A  ++D   +     +   ++T+I  +   G+ +    + ++M   G KPN++
Sbjct: 207 RSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVV 266

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL  + RA R  + + +  EMT   + P+  TY+ L     R       LS++ E 
Sbjct: 267 TYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGES 326

Query: 218 KEKGMQL-----------------------------------SVTLYNTLLAMCADVGYT 242
            +KG+ +                                   +  +YNTL+     V   
Sbjct: 327 LKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDL 386

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
             AF IFE MK S + +PD  T++++I        ++EAE +  EM ++G +P++    +
Sbjct: 387 QGAFSIFEQMK-SRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNT 445

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGI 328
           LI  YG+A + +     L+ + + GI
Sbjct: 446 LIDAYGRAGQLEKCFTVLSDMQDKGI 471



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 109/250 (43%), Gaps = 6/250 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKP-N 155
           R  +V  AFGL   A     R D  A++  ++    AG+ D  L +   M ++ G  P +
Sbjct: 138 RHADVRAAFGLLVAA---GARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPD 194

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             +YN ++  + R+ +      ++ EM D G++PN  TY +++  + +    E    +  
Sbjct: 195 AFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRD 254

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M + G + +V  YN LL+     G  DE   + ++M +S +  PD +T+S +    +  
Sbjct: 255 QMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEM-TSYSMLPDGFTYSILFDGLTRT 313

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G      ++F E L+ G     +  + L+    K  +     + L  L   G+ P     
Sbjct: 314 GDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIY 373

Query: 336 GCLLNVMTQT 345
             L+N   Q 
Sbjct: 374 NTLINGYCQV 383



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 100/233 (42%), Gaps = 1/233 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR G+      L+  +  +   I     S L+      G       V E +   G+ P  
Sbjct: 311 TRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTT 370

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN L++   + +      +I+++M    + P+  TY +L+    +     +   +  E
Sbjct: 371 AIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVME 430

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G+  SV  +NTL+      G  ++ F +  DM+  +  + +  +F S++      G
Sbjct: 431 MEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQ-DKGIKSNVISFGSVVKAFCKNG 489

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           K+ EA A+ ++M+     PN  V  S+I  Y ++  T+     + ++   G++
Sbjct: 490 KIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVS 542


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + GN+++AF ++DR   +    DPN+  +S LI    + G  +  +++ EEM   G++P 
Sbjct: 249 KNGNLDLAFEMFDRMVKDG--CDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPT 306

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +  Y   + ++  A R  +   +  +M   G  PN  TY +L+    R    E  + VY 
Sbjct: 307 VHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYH 366

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+  +   Y+ L+      G  + A  IFE M S ++  P++ T++ +I      
Sbjct: 367 KMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSL-PNTETYNVIIKGFCSI 425

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G + +A A+F++ML+AG  PN+     +I  Y K    ++ +R L  +   G+  D
Sbjct: 426 GYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLD 481



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 1/222 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++ A  ++D+        +   ++ +I +Y   G  +  + + E MK  G+K +  TY
Sbjct: 426 GYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTY 485

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            NL+    R  +     +++ EM ++G+SPN  TY +++  Y      +D L+++ +M E
Sbjct: 486 ANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVE 545

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   S   YN +++  +      EA E F      +   P+  T++S I      G+ S
Sbjct: 546 SGNVPSSGTYNMMISGFSKTNRISEA-ENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTS 604

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
            A  +F+EM +  + PNL   +SLI    +  + +D  R L+
Sbjct: 605 LAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLD 646



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 114/245 (46%), Gaps = 11/245 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +  A  L +  +    ++D   ++ LI  +   G  +   +++ EM   G+ PN++
Sbjct: 459 KQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVV 518

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN +++      +      ++ +M ++G  P+  TY  ++  + +     +  +   +M
Sbjct: 519 TYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKM 578

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G+  +V  Y + +      G T  AF+IF +MK  +   P+  T+SS+I      G+
Sbjct: 579 VKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYF-PNLCTYSSLIDGLCQEGQ 637

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPELGITPDDRF 334
             +AE     +L+ G EPN+   T+L++     G+    D +V ++ +    G+ P +  
Sbjct: 638 AEDAE----RLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKK---KGLQPSEEI 690

Query: 335 CGCLL 339
              LL
Sbjct: 691 YRALL 695



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 109/238 (45%), Gaps = 13/238 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           +R G +E AF L++        I PN   ++ +I  Y T    D  L ++ +M   G  P
Sbjct: 493 SRGGKLEHAFSLFNEMVEHG--ISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVP 550

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS-- 212
           +  TYN ++    +  R  + +    +M   GL PN  TY S +   G  + G  +L+  
Sbjct: 551 SSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFID--GLCKNGRTSLAFK 608

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           ++ EMK++    ++  Y++L+      G  ++A  + +D      C+P+  T+++++   
Sbjct: 609 IFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD-----GCEPNVDTYTTLVRGL 663

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             +G+  EA+ +   M + G +P+  +  +L+    K    +  ++  + +   G  P
Sbjct: 664 CGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQP 721



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 38/230 (16%)

Query: 123 AFSTLIKLYGTAGNFDGC-LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +FSTL+   G   + DG   +VY EM   G++PN+ T+N ++  +    +  + + I   
Sbjct: 169 SFSTLLIQLGKF-DMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGH 227

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +   G  P+  TY SL+                                  +  C + G 
Sbjct: 228 IFHYGACPDTFTYTSLI----------------------------------IGHCKN-GN 252

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D AFE+F+ M   + C P+S T+S++I      G++ EA  M  EM++ G EP +   T
Sbjct: 253 LDLAFEMFDRM-VKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYT 311

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
             I     A R+ + V+ L ++ + G  P+ +    L++ +++  K E+ 
Sbjct: 312 IPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVA 361



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 5/168 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G   +AF ++   +   +  +   +S+LI      G  +      E +   G +PN+ 
Sbjct: 599 KNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDA----ERLLDDGCEPNVD 654

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  +    R ++   + + M   GL P+   Y +LL    +    E  L ++  M
Sbjct: 655 TYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSM 714

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWT 264
              G Q  ++ Y  L+       +  +A  +F+ M K   N     WT
Sbjct: 715 VTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWT 762


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 100/199 (50%), Gaps = 1/199 (0%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G +PN  TYN+++D   +         I K+    G  P+  TY SL+  + +    +  
Sbjct: 395 GFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQA 454

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           ++V+++   KG++ S+ +YNTL+      G    A ++  +M + + C+PD WT++ +I 
Sbjct: 455 MAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM-AEKGCKPDIWTYNLIIN 513

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G +S+A  +  + +  G  P++F   +L+  Y +  + D  +  +NR+   G+TP
Sbjct: 514 GLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTP 573

Query: 331 DDRFCGCLLNVMTQTPKEE 349
           D      LLN + +T K E
Sbjct: 574 DVITYNTLLNGLCKTAKSE 592



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 116/242 (47%), Gaps = 2/242 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TL+  Y      D  + +   M + G+ P++ITYN LL+ + +  +  +V  I+
Sbjct: 539 DIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIF 598

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           K MT+ G +PN  TY +++ +   ++   + + +  EMK KG+   V  + TL+     V
Sbjct: 599 KAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKV 658

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A+ +F  M+   +    + T++ +I+  S +  +  A  +F+EM + G +P+ + 
Sbjct: 659 GDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYT 718

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECV 357
              LI  + K    +   + L    E G  P     G +LN +    K  E +G +   V
Sbjct: 719 YRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMV 778

Query: 358 EK 359
           +K
Sbjct: 779 QK 780



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 1/204 (0%)

Query: 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187
           ++ YG  G     ++ +E M      P++ +YN +++ +       Q   +Y  M D  +
Sbjct: 162 MRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKV 221

Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
             +  TY   ++++ R       L + R M   G   +   Y T++    + G  D A E
Sbjct: 222 ESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARE 281

Query: 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           +F++M     C PD  TF+ ++     +G V E+E +F+++L+ G  PNLF     IQ  
Sbjct: 282 LFDEMLECCLC-PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGL 340

Query: 308 GKAQRTDDVVRALNRLPELGITPD 331
            K    D  VR L  +   G+ PD
Sbjct: 341 CKEGSLDRAVRLLGCVSREGLRPD 364



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 110/235 (46%), Gaps = 2/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   ++ A  L +R  ++    D   ++TL+         +  + +++ M   G  PN+I
Sbjct: 552 RQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNII 611

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN +++++  +K+  +   +  EM   GL+P+  ++ +L+  + +    +    ++R M
Sbjct: 612 TYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGM 671

Query: 218 -KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            K+  +  +   YN +++  ++      A  +F +MK +  C PD++T+  +I      G
Sbjct: 672 EKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKN-GCDPDNYTYRVLIDGFCKTG 730

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            V++      E +E GF P+L     ++ C     +  + V  ++ + +  I PD
Sbjct: 731 NVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPD 785



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 38/271 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R G ++ A   ++R   + +  DP+ +S   ++ +    G F+    VY  MK   V+ +
Sbjct: 167 RKGKIQEAVDTFERM--DLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESD 224

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TY   + +  R  RP+    + + M   G   N   Y +++  +      +    ++ 
Sbjct: 225 VYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFD 284

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM----------------------- 252
           EM E  +   VT +N L+      G+  E+  +F+ +                       
Sbjct: 285 EMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEG 344

Query: 253 -----------KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
                       S E  +PD  T++++I     + +V EAE   ++M+  GFEPN F   
Sbjct: 345 SLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYN 404

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           S+I  Y K     D  R L      G  PD+
Sbjct: 405 SIIDGYCKKGMVVDANRILKDAVFKGFKPDE 435



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 10/236 (4%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  P++ TYN L+D   R  +      +   M   G++P+  TY +LL    +    E+ 
Sbjct: 535 GCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEV 594

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + +++ M EKG   ++  YNT++    +    +EA ++  +MK S+   PD  +F ++IT
Sbjct: 595 MEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMK-SKGLTPDVVSFGTLIT 653

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS--LIQCYGKAQRTDDVVRALNRLPELGI 328
                G +  A  +F  M E  ++ +    T   +I  + +       +R  + + + G 
Sbjct: 654 GFCKVGDLDGAYGLFRGM-EKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGC 712

Query: 329 TPDDRFCGCLLNVMTQTPKEELGK--LVECVEK----SNSKLGYVVKLLLEEQDIE 378
            PD+     L++   +T     G   L+E +EK    S +  G V+  L  E  ++
Sbjct: 713 DPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQ 768



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 41/219 (18%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT---DNGLSPNWNTYASLLRAYGRARYG 207
           G K  + TY ++L  +G   +  +++ +  EM    DN L      Y   +R YGR    
Sbjct: 114 GFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEG--VYVEAMRFYGRKGKI 171

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT--- 264
           ++ +  +  M       SV  YN ++ +  + GY ++A +++  MK  +  + D +T   
Sbjct: 172 QEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKK-VESDVYTYTI 230

Query: 265 --------------------------FSSMITICSCR------GKVSEAEAMFNEMLEAG 292
                                     FS+ +  C+        G    A  +F+EMLE  
Sbjct: 231 RIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECC 290

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             P++     L+    K     +  R  +++ + G+ P+
Sbjct: 291 LCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPN 329


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 115/237 (48%), Gaps = 3/237 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  L D  R +    D   ++ LI      G+ D  LN+   + + G KP+ +TY  +L 
Sbjct: 305 AMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLK 364

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           ++  ++R  +V+ +  EMT N  +P+  T+ +++ +  +    +  + V   M E G   
Sbjct: 365 SLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVA 424

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEA 283
            +  Y+++L    DVG  D+A E+   +KS   C+PD+  +++++  +CS   +   AE 
Sbjct: 425 DIVTYSSILDGLCDVGRVDDAVELLSRLKSY-GCKPDTIAYTTVLKGLCSTE-QWERAEE 482

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           +  EML +   P+     +++    +    D  +R + ++ E G +PD     C+++
Sbjct: 483 LMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIID 539



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 14/331 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG +E A  L +      +  D   F+ LI+     G     L V+++M   G  P+++
Sbjct: 231 RAGRIEDARRLIN---GMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVV 287

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ LLD   +     Q   +  EM   G  P+  TY  L+ A       ++ L++   +
Sbjct: 288 TYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNL 347

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
              G +     Y  +L ++C    +  E  E+  +M +S NC PD  TF++++T    +G
Sbjct: 348 PSHGCKPDAVTYTPVLKSLCGSERWK-EVEELLAEM-TSNNCAPDEVTFNTIVTSLCQQG 405

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V  A  + + M E G   ++   +S++       R DD V  L+RL   G  PD     
Sbjct: 406 LVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYT 465

Query: 337 CLLNVMTQTPK----EELGKLVECVEKSNSKLGY--VVKLLLEEQDIEGDFKKEATELFN 390
            +L  +  T +    EEL   + C +    ++ +  VV  L ++  ++   +       N
Sbjct: 466 TVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSEN 525

Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENACKLL 421
             S D+     NC+ID   N + +++A +LL
Sbjct: 526 GCSPDIVTY--NCIIDGLCNESCIDDAMELL 554



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 10/235 (4%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGN-------FDGCLNVYEEMKAIGVKPNMITY 159
           GL DRA     ++  N  S  I  Y    +        D  + +  ++++ G KP+++T+
Sbjct: 510 GLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTF 569

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LL  +    R    + +   M  +   P+  T+ +++ +  +       +   + M E
Sbjct: 570 NTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAE 629

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G   + + Y+ ++      G    A E+   M    N  PD  T++++I+  +  GK+ 
Sbjct: 630 NGCVPNSSTYSIVVDALLKAGKAQAALELLSGMT---NGTPDLITYNTVISNLTKAGKME 686

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           EA  +   M+  G  P+     SL     +   TD  VR L R+ + G++PD  F
Sbjct: 687 EALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTF 741



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 98/232 (42%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G V+ A  + D         D   +S+++      G  D  + +   +K+ G KP+ I Y
Sbjct: 405 GLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 464

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             +L  +   ++  + + +  EM  +   P+  T+ +++ +  +    +  + V  +M E
Sbjct: 465 TTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSE 524

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G    +  YN ++    +    D+A E+  D++S   C+PD  TF++++       +  
Sbjct: 525 NGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSC-GCKPDIVTFNTLLKGLCGVDRWE 583

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +AE +   M+ +   P+     ++I    +       +  L  + E G  P+
Sbjct: 584 DAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPN 635



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 11/178 (6%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN+  +S ++     AG     L +   M      P++ITYN ++  + +A +  +   +
Sbjct: 634 PNSSTYSIVVDALLKAGKAQAALELLSGMT--NGTPDLITYNTVISNLTKAGKMEEALDL 691

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARY-GED-TLSVYREMKEKGMQLSVTLYN-TLLAM 235
            + M  NGL P+  TY SL  AYG  R  G D  + + R +++ G+    T YN  LL  
Sbjct: 692 LRVMVSNGLCPDTTTYRSL--AYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGF 749

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
           C D   TD A + F  M SS  C PD  T+  ++   +  G + EA+ +   +   G 
Sbjct: 750 CRD-RRTDLAIDCFAHMVSS-GCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 14/256 (5%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+TL+K       ++    +   M      P+ +T+N ++ ++ +     Q     K M 
Sbjct: 569 FNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMA 628

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +NG  PN +TY+ ++ A  +A   +  L +   M      L    YNT+++     G  +
Sbjct: 629 ENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDL--ITYNTVISNLTKAGKME 686

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           EA ++   M S+  C PD+ T+ S+   +C   G    A  M   + + G  P+      
Sbjct: 687 EALDLLRVMVSNGLC-PDTTTYRSLAYGVCREDG-TDRAVRMLRRVQDTGLSPDTTFYND 744

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEK--- 359
           ++  + + +RTD  +     +   G  PD+     LL  +        G L++  ++   
Sbjct: 745 VLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAY------GGLLDEAKRLLA 798

Query: 360 SNSKLGYVVKLLLEEQ 375
           S   LG + K L+EE+
Sbjct: 799 SLCSLGVLDKKLIEEE 814



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 2/157 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  + A  L     N     D   ++T+I     AG  +  L++   M + G+ P+  
Sbjct: 648 KAGKAQAALELLSGMTNGTP--DLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTT 705

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY +L   + R     +   + + + D GLSP+   Y  +L  + R R  +  +  +  M
Sbjct: 706 TYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHM 765

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
              G     + Y  LL   A  G  DEA  +   + S
Sbjct: 766 VSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCS 802


>gi|115440859|ref|NP_001044709.1| Os01g0833000 [Oryza sativa Japonica Group]
 gi|20805252|dbj|BAB92918.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113534240|dbj|BAF06623.1| Os01g0833000 [Oryza sativa Japonica Group]
          Length = 665

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 112/227 (49%), Gaps = 15/227 (6%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIG----------VKPNMITYNNLLDTMGRAKRPW 173
           ++T++++YG AG F   ++++  M++            +KPN++TYN ++   G++    
Sbjct: 344 YNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDE 403

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +  ++ ++M  NG+ PN  TY+++L  + +A   +    ++ +++E G ++   LY T++
Sbjct: 404 KAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMV 463

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G   ++  +  D+K SE+   +     + I I +  G+V EA  +F    +AG 
Sbjct: 464 VAYERAGLVSQSKRLLHDLKDSEDVPKE-----TAIKILANAGRVEEAAWLFRRAADAGD 518

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +  V   +I  + K++R   V+   + + + G  PD       +N
Sbjct: 519 VRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKAGSLPDSETIAITMN 565



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 12/246 (4%)

Query: 98  RAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNF-DGCLNVYEEMKAIGVKPN 155
           R G+   A  L+ R R     + D  A++  I  Y  +    D    +  +M + GV P+
Sbjct: 210 RGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLHDMPSDGVAPD 269

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVY 214
             +Y+ +L  + R  R     +++  M     + P+ + +  +L AYG+     +   ++
Sbjct: 270 AESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAYGQLDLAREADRLF 329

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---------CQPDSWTF 265
             M+  G+  SV  YNT+L +  D G   EA  +F  M+S+ +          +P+  T+
Sbjct: 330 WSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTY 389

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++MI I     +  +A ++  +M   G +PN    ++++  + KA + D   +   +L E
Sbjct: 390 NTMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLRE 449

Query: 326 LGITPD 331
            G   D
Sbjct: 450 AGTEID 455



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 2/215 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG + +A GL    R+     D  ++STL+     AG+ D  L     M+   V P+++
Sbjct: 140 RAGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLV 199

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDT-LSVYR 215
            ++NL+    R     +   ++  +    G+ P+   Y + + AY ++    D    +  
Sbjct: 200 LFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLH 259

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+      Y+ +LA  A  G    A  +F  M++    +PD   F+ ++      
Sbjct: 260 DMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAYGQL 319

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
               EA+ +F  M  AG  P++    ++++ YG A
Sbjct: 320 DLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDA 354



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 128/291 (43%), Gaps = 25/291 (8%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPN 155
           TRAG+++ A        ++    D   FS LI L    G+    L ++  ++ A G+KP+
Sbjct: 174 TRAGHLDHALTFLPLMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPD 233

Query: 156 MITYNNLL------DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           +  YN  +      D +  A R      +  +M  +G++P+  +Y+ +L A  R      
Sbjct: 234 LKAYNAAIAAYCKSDLLRDANR-----LLLHDMPSDGVAPDAESYSPILAALARRGRHLA 288

Query: 210 TLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            +S++  M+    ++  ++++N +L     +    EA  +F  M+ +    P   T+++M
Sbjct: 289 AVSLFTHMRAVARVKPDLSVFNIVLNAYGQLDLAREADRLFWSMRRA-GVAPSVVTYNTM 347

Query: 269 ITICSCRGKVSEAEAMFNEMLEAG----------FEPNLFVLTSLIQCYGKAQRTDDVVR 318
           + +    G   EA  +F  M  A            +PN+    ++I  YGK+   +    
Sbjct: 348 LRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDEKAGS 407

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 368
            +  +   GI P+      +L++  +  K +  GKL E + ++ +++  V+
Sbjct: 408 LVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVL 458



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 41/205 (20%)

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +I YN LL +  RA        +  EM D G++P+  +Y++LL A  RA + +  L+   
Sbjct: 128 LIPYNLLLRSACRAGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLP 187

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE----------DMKS----------- 254
            M++  +   + L++ L+ +    G   +A  +F           D+K+           
Sbjct: 188 LMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKS 247

Query: 255 ---------------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLF 298
                          S+   PD+ ++S ++   + RG+   A ++F  M   A  +P+L 
Sbjct: 248 DLLRDANRLLLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLS 307

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRL 323
           V   ++  YG+     D+ R  +RL
Sbjct: 308 VFNIVLNAYGQL----DLAREADRL 328



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 31/171 (18%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-------- 148
            +AG ++ A  L+++ R     IDP  + T++  Y  AG       +  ++K        
Sbjct: 432 VKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSEDVPKE 491

Query: 149 -AIGVKPNM----------------------ITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
            AI +  N                         Y  ++D   +++R   V  ++ EM   
Sbjct: 492 TAIKILANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKA 551

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           G  P+  T A  + A+G+ +  +   ++YR M+E+G   S  ++  ++++ 
Sbjct: 552 GSLPDSETIAITMNAHGKLKEFDKAAALYRAMREEGCVFSDRVHFQMVSLL 602


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 128/285 (44%), Gaps = 20/285 (7%)

Query: 69  KTGSSPKSYIWVNPKSPRASKLKEKSYD---TRAGNVEMAFGLYDRARNEKWRIDPNAFS 125
           K+G + ++Y ++  K    +K+   S     ++AGN + A  L ++  NE  + D   +S
Sbjct: 575 KSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYS 634

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
            L++        +  L++ ++M   GVK N++ Y  ++  M +  +    K+++ EM  +
Sbjct: 635 VLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISS 694

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G  P+  TY   + +Y +    E+   +  EM+  G+   V  Y+  +  C  +GY D A
Sbjct: 695 GHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRA 754

Query: 246 FEIFEDMKSSENCQPDSWTF----SSMITICSCRGKVSEAEAMFN------------EML 289
           F   + M  + +C+P+ WT+       + +        +   M+N             M+
Sbjct: 755 FSTLKRMVDA-SCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMM 813

Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           + G  P +   +S+I  + KA R ++    L+ +    I+P++  
Sbjct: 814 KHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEI 858



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 2/247 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++ +A   +   R    ++D    + L+  Y    +      +   M  +G + N  
Sbjct: 191 KKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEY 250

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L+  +  A+   +   +   M  +G S N + Y  L++   +     D   +  EM
Sbjct: 251 SYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEM 310

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+  SV  YN ++      G   +A  I + +     C PD WT++S+I    C GK
Sbjct: 311 PLRGVVPSVWTYNAMIDGYCKSGRMKDALGI-KALMEQNGCNPDDWTYNSLI-YGLCGGK 368

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EAE + N  +  GF P +   T+LI  Y KA+R DD +R  + +       D +  G 
Sbjct: 369 LDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGV 428

Query: 338 LLNVMTQ 344
           L+NV+ +
Sbjct: 429 LINVLIK 435



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 36/226 (15%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F+ LI  Y  A   D  L V   M +   K ++  Y  L++ + +  R  + K    EM 
Sbjct: 391 FTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMF 450

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            NGL+PN   Y S++  Y +                 GM                VG   
Sbjct: 451 ANGLAPNVVIYTSIIDGYCKV----------------GM----------------VGAAL 478

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           E F++ E     E C P++WT+ S+I       K+ +A A+  +M E G  P +   T+L
Sbjct: 479 EVFKLME----HEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTL 534

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           IQ   K    D+  R    + + G+TPD++    L + + ++ + E
Sbjct: 535 IQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAE 580



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 10/212 (4%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
           A++TLI+       FD    ++E M+  G+ P+   YN L D + ++ R  +    Y  +
Sbjct: 530 AYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEA---YSFL 586

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G+     TY SL+  + +A   +    +  +M  +G +  +  Y+ LL         
Sbjct: 587 VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKL 646

Query: 243 DEAFEIFEDMK-SSENCQPDSWT--FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           +EA  I + M  S   C   ++T   S MI      GK   A+++FNEM+ +G +P+   
Sbjct: 647 NEALSILDQMTVSGVKCNIVAYTIIISEMIK----EGKHDHAKSLFNEMISSGHKPSATT 702

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            T  I  Y K  + ++    +  +   G+TPD
Sbjct: 703 YTVFISSYCKIGQIEEAEHLIGEMERDGVTPD 734



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 118/283 (41%), Gaps = 13/283 (4%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           ++ + ++ LIK     G       + +EM   GV P++ TYN ++D   ++ R      I
Sbjct: 282 LNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGI 341

Query: 179 YKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
              M  NG +P+  TY SL+     G+    E+ L+       +G   +V  +  L+   
Sbjct: 342 KALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEELLN---GAIARGFTPTVITFTNLINGY 398

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
                 D+A  +  +M SS NC+ D   +  +I +   + ++ EA+   NEM   G  PN
Sbjct: 399 CKAERIDDALRVKSNMISS-NCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPN 457

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVEC 356
           + + TS+I  Y K       +     +   G  P+    G L+  + Q  K  L K +  
Sbjct: 458 VVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKK--LHKAMAL 515

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKE----ATELFNSISKD 395
           + K     G    ++     I+G  KK     A  LF  + K+
Sbjct: 516 ITKMQED-GITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKN 557



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 113/276 (40%), Gaps = 5/276 (1%)

Query: 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           ++D  A+  LI +               EM A G+ PN++ Y +++D   +         
Sbjct: 420 KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALE 479

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++K M   G  PN  TY SL+    + +     +++  +M+E G+   V  Y TL+    
Sbjct: 480 VFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQC 539

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
                D AF +FE M+ +    PD   ++ ++T   C  K   AE  ++ ++  G     
Sbjct: 540 KKHEFDNAFRLFEMMEKN-GLTPDEQAYN-VLTDALC--KSGRAEEAYSFLVRKGVVLTK 595

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356
              TSL+  + KA  TD     + ++   G   D      LL  + +  K  E   +++ 
Sbjct: 596 VTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQ 655

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
           +  S  K   V   ++  + I+      A  LFN +
Sbjct: 656 MTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEM 691



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 91/217 (41%), Gaps = 19/217 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G  + A  L++   +   +     ++  I  Y   G  +   ++  EM+  GV P+++
Sbjct: 677 KEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVV 736

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-----ARYGEDT-- 210
           TY+  ++  G      +  +  K M D    PN  TY  LL+ + +     A Y + +  
Sbjct: 737 TYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGM 796

Query: 211 ---------LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
                      +   M + G+  +V  Y++++A        +EA  + + M   +   P+
Sbjct: 797 WNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLG-KAISPN 855

Query: 262 SWTFSSMITICSCRGKVSEAEAMF-NEMLEAGFEPNL 297
              ++ +I  C C  K+   +  F  +M+E GF+P L
Sbjct: 856 EEIYTMLIK-CCCDIKLFGKDVSFVTDMIEFGFQPQL 891



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           E M   G+ P ++TY++++    +A R  +   +   M    +SPN   Y  L++     
Sbjct: 810 ERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDI 869

Query: 205 R-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
           + +G+D +S   +M E G Q  +  Y+ L+    D G  D A  +F D+
Sbjct: 870 KLFGKD-VSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDL 917



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 79/218 (36%), Gaps = 23/218 (10%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  L      +    D   +   I   G  G  D   +  + M     +PN  
Sbjct: 712 KIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCW 771

Query: 158 TYNNLL--------------DTMG-----RAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           TY  LL              DT G          WQ   + + M  +GL+P   TY+S++
Sbjct: 772 TYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQ---LLERMMKHGLNPTVVTYSSII 828

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             + +A   E+   +   M  K +  +  +Y  L+  C D+    +      DM      
Sbjct: 829 AGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEF-GF 887

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
           QP   ++  +I      G    A+++F ++L   +  N
Sbjct: 888 QPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHN 925


>gi|125572530|gb|EAZ14045.1| hypothetical protein OsJ_03970 [Oryza sativa Japonica Group]
          Length = 665

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 112/227 (49%), Gaps = 15/227 (6%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIG----------VKPNMITYNNLLDTMGRAKRPW 173
           ++T++++YG AG F   ++++  M++            +KPN++TYN ++   G++    
Sbjct: 344 YNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDE 403

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +  ++ ++M  NG+ PN  TY+++L  + +A   +    ++ +++E G ++   LY T++
Sbjct: 404 KAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMV 463

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G   ++  +  D+K SE+   +     + I I +  G+V EA  +F    +AG 
Sbjct: 464 VAYERAGLVSQSKRLLHDLKDSEDVPKE-----TAIKILANAGRVEEAAWLFRRAADAGD 518

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
             +  V   +I  + K++R   V+   + + + G  PD       +N
Sbjct: 519 VRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKAGSLPDSETIAITMN 565



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 12/246 (4%)

Query: 98  RAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNF-DGCLNVYEEMKAIGVKPN 155
           R G+   A  L+ R R     + D  A++  I  Y  +    D    +  +M + GV P+
Sbjct: 210 RGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLHDMPSDGVAPD 269

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVY 214
             +Y+ +L  + R  R     +++  M     + P+ + +  +L AYG+     +   ++
Sbjct: 270 AESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAYGQLDLAREADRLF 329

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---------CQPDSWTF 265
             M+  G+  SV  YNT+L +  D G   EA  +F  M+S+ +          +P+  T+
Sbjct: 330 WSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTY 389

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           ++MI I     +  +A ++  +M   G +PN    ++++  + KA + D   +   +L E
Sbjct: 390 NTMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLRE 449

Query: 326 LGITPD 331
            G   D
Sbjct: 450 AGTEID 455



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 2/215 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G + +A GL    R+     D  ++STL+     AG+ D  L     M+   V P+++
Sbjct: 140 RPGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLV 199

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDT-LSVYR 215
            ++NL+    R     +   ++  +    G+ P+   Y + + AY ++    D    +  
Sbjct: 200 LFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLH 259

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+      Y+ +LA  A  G    A  +F  M++    +PD   F+ ++      
Sbjct: 260 DMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAYGQL 319

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
               EA+ +F  M  AG  P++    ++++ YG A
Sbjct: 320 DLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDA 354



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 128/291 (43%), Gaps = 25/291 (8%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPN 155
           TRAG+++ A        ++    D   FS LI L    G+    L ++  ++ A G+KP+
Sbjct: 174 TRAGHLDHALTFLPLMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPD 233

Query: 156 MITYNNLL------DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           +  YN  +      D +  A R      +  +M  +G++P+  +Y+ +L A  R      
Sbjct: 234 LKAYNAAIAAYCKSDLLRDANR-----LLLHDMPSDGVAPDAESYSPILAALARRGRHLA 288

Query: 210 TLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            +S++  M+    ++  ++++N +L     +    EA  +F  M+ +    P   T+++M
Sbjct: 289 AVSLFTHMRAVARVKPDLSVFNIVLNAYGQLDLAREADRLFWSMRRA-GVAPSVVTYNTM 347

Query: 269 ITICSCRGKVSEAEAMFNEMLEAG----------FEPNLFVLTSLIQCYGKAQRTDDVVR 318
           + +    G   EA  +F  M  A            +PN+    ++I  YGK+   +    
Sbjct: 348 LRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDEKAGS 407

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 368
            +  +   GI P+      +L++  +  K +  GKL E + ++ +++  V+
Sbjct: 408 LVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVL 458



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 41/205 (20%)

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           +I YN LL +  R         +  EM D G++P+  +Y++LL A  RA + +  L+   
Sbjct: 128 LIPYNLLLRSACRPGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLP 187

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE----------DMKS----------- 254
            M++  +   + L++ L+ +    G   +A  +F           D+K+           
Sbjct: 188 LMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKS 247

Query: 255 ---------------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLF 298
                          S+   PD+ ++S ++   + RG+   A ++F  M   A  +P+L 
Sbjct: 248 DLLRDANRLLLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLS 307

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRL 323
           V   ++  YG+     D+ R  +RL
Sbjct: 308 VFNIVLNAYGQL----DLAREADRL 328



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 31/171 (18%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-------- 148
            +AG ++ A  L+++ R     IDP  + T++  Y  AG       +  ++K        
Sbjct: 432 VKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSEDVPKE 491

Query: 149 -AIGVKPNM----------------------ITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
            AI +  N                         Y  ++D   +++R   V  ++ EM   
Sbjct: 492 TAIKILANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKA 551

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           G  P+  T A  + A+G+ +  +   ++YR M+E+G   S  ++  ++++ 
Sbjct: 552 GSLPDSETIAITMNAHGKLKEFDKAAALYRAMREEGCVFSDRVHFQMVSLL 602


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 126/256 (49%), Gaps = 6/256 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++TLI  +   GN D  + ++ +M      P++ TYN L+D   + +RP     +
Sbjct: 269 PNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKL 328

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            +EM   G  PN+ TY +L+ +  ++    D  ++ + M  +  + S   +N ++ M   
Sbjct: 329 LQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK 388

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNL 297
           VG  D A+E+F+ M +   C PD +T++ MI+  +CR  ++ +A  +   M EAG  P++
Sbjct: 389 VGQLDLAYELFQLM-TDRGCLPDIYTYNIMIS-GACRANRIDDARQLLERMTEAGCPPDV 446

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356
               S++    KA + D+       L   G   D   C  L++ + ++ + ++  KL+  
Sbjct: 447 VTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLRE 506

Query: 357 VEKSNSKLGYVVKLLL 372
           +E++ S    V   +L
Sbjct: 507 MERNGSAPDVVAYTIL 522



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           + E+M   G  PN++TYN L++   +     +   ++ +M +N  SP+  TY  L+  Y 
Sbjct: 258 ILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYC 317

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
           +    +D   + +EM + G + +   YNTL+      G   +AF + + M    +C+P  
Sbjct: 318 KQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQ-MMLRRDCKPSH 376

Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
           +TF+ MI +    G++  A  +F  M + G  P+++    +I    +A R DD  + L R
Sbjct: 377 FTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLER 436

Query: 323 LPELGITPD 331
           + E G  PD
Sbjct: 437 MTEAGCPPD 445



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 2/181 (1%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G K +  T N LL    R K+  +   ++K       SP+  TY++L+  + +AR  +  
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQA 186

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             +  EM+++G+     +YNT++    D G  D A   + DM+   NC P   T++ ++ 
Sbjct: 187 YRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ--RNCAPSVITYTILVD 244

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                 ++S+A  +  +M+EAG  PN+    +LI  + K    D+ V   N++ E   +P
Sbjct: 245 ALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSP 304

Query: 331 D 331
           D
Sbjct: 305 D 305



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 165/386 (42%), Gaps = 17/386 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G    AF L         +     F+ +I ++   G  D    +++ M   G  P++
Sbjct: 352 VKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDI 411

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN ++    RA R    + + + MT+ G  P+  TY S++    +A   ++   VY  
Sbjct: 412 YTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEV 471

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           ++  G  L V   +TL+         D+A ++  +M+ + +  PD   ++ +I       
Sbjct: 472 LRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS-APDVVAYTILIHGFCKAD 530

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ ++ A F+EML+ G  P +   + +I    K+ R  D    L  + E G+TPD     
Sbjct: 531 QLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYT 590

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
            +++ + ++   +E  +L + ++++      V   +L ++  +     EA  L   +  D
Sbjct: 591 SVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESD 650

Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR----SPTQWSLHLKSLSLG 451
                  CL D     ++ +   K  E      ++  ++SR    +P  +SL L  L   
Sbjct: 651 ------GCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAE 704

Query: 452 AAL-TALHIWINDLSKALESGEEFPP 476
             +  A+ IW     +ALE+G +  P
Sbjct: 705 EKMDQAMEIW----EEALEAGADVDP 726



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 2/219 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R    + A+ L+   R      D   +STLI  +  A +F     + +EM+  G+ P+ 
Sbjct: 143 VRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHN 202

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             YN ++  +    R       Y++M  N  +P+  TY  L+ A  ++    D   +  +
Sbjct: 203 AVYNTIIKGLCDNGRVDSALVHYRDMQRN-CAPSVITYTILVDALCKSARISDASLILED 261

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G   +V  YNTL+     +G  DEA  +F  M  + +C PD +T++ +I     + 
Sbjct: 262 MIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLEN-SCSPDVFTYNILIDGYCKQE 320

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           +  +   +  EM++ G EPN     +L+    K+ +  D
Sbjct: 321 RPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYID 359



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 85/218 (38%), Gaps = 19/218 (8%)

Query: 23  FTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG--------KTGSSP 74
           F  + Q D SL+F+S+  L K  V    T S    K  ++ +   G        + G +P
Sbjct: 526 FCKADQLDKSLAFFSEM-LDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTP 584

Query: 75  KSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA 134
            + ++    S      K  SYD        A+ LY   +          ++ L+      
Sbjct: 585 DAIVYT---SVIDGLCKSDSYDE-------AYELYKLMKQTGCAPTVVTYNVLVDKLCKV 634

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
              D  +++ E M++ G  P+ +TYN++ D   ++    +   +++ M   G SP    Y
Sbjct: 635 SRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMY 694

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
           + LL         +  + ++ E  E G  +   +  TL
Sbjct: 695 SLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 110/234 (47%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A     +      +I    +++LI  +   GN    ++ ++EM   G+KP ++
Sbjct: 413 RRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVV 472

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y +L+       +  +   +Y EMT  G++PN  T+ +L+ A  RA    D   ++ EM
Sbjct: 473 SYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEM 532

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E+ M  +   YN ++      G T +AFE+   M   +   PD++T+  +I+     G+
Sbjct: 533 LEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQM-VQKGLVPDTYTYRPLISSLCSTGR 591

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V EA+   +++    F+ N    ++L+  Y K  R  D +     + + G+  D
Sbjct: 592 VCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMD 645



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 113/230 (49%), Gaps = 1/230 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E+  G+ D      +     A S+L++     G      ++   +K +G  P++  YN L
Sbjct: 313 EVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNAL 372

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++++ +  +  + + ++KEM + GL  N  TY+ L+ ++ R    +  +    +M   G+
Sbjct: 373 INSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGI 432

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
           +++V  YN+L+     +G    A   F++M   +  +P   +++S+I+    +GK+ EA 
Sbjct: 433 KITVYPYNSLINGHCKLGNLSAAVSFFDEM-IDKGLKPTVVSYTSLISGYCNKGKLHEAF 491

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            +++EM   G  PN +  T+LI    +A R  D  R  + + E  + P++
Sbjct: 492 RLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNE 541



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 12/273 (4%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR--------AGNVEMAFGLYDRARNEKWR 118
           H K G++ K++  +N    +   L   +Y  R         G V  A    D    E ++
Sbjct: 551 HCKEGNTVKAFELLNQMVQKG--LVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFK 608

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           ++   +S L+  Y   G     L V  EM   GV  +++ Y  L+D   + +    V  +
Sbjct: 609 LNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGL 668

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            K M D  L P+   Y S++  Y +A   +    ++  M ++G   ++  Y TL+     
Sbjct: 669 LKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCK 728

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  D+A  ++++M  S N  P+  T+   +   +  G + +A  + N+ML+ G   N  
Sbjct: 729 AGLMDKAELLWKEMLVS-NSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTV 786

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               L++ + K  R ++  + L+ + +  I PD
Sbjct: 787 SYNILVRGFCKLGRVEEATKLLDEMIDNAIFPD 819



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RA  +  AF L+D    +    +   ++ +I+ +   GN      +  +M   G+ P+  
Sbjct: 518 RANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTY 577

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+ ++    R  + K    ++       N   Y++LL  Y +     D L V REM
Sbjct: 578 TYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREM 637

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G+ + +  Y  L+        T   F + ++M   +  +PD   ++SMI   S  G 
Sbjct: 638 VKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNM-HDQRLRPDKVIYTSMIDGYSKAGS 696

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
           V +A  +++ M++ G  PN+   T+LI    KA   D
Sbjct: 697 VKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMD 733



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 3/227 (1%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V+M   L+    +   R D   +  +I+ +    NF     + + M++  +  N++ YN 
Sbjct: 209 VDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDL--NVVVYNV 266

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+  + + KR W+   I   +   GL+ +  TY +L+    + +  E    V  EM E G
Sbjct: 267 LIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELG 326

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
              +    ++L+      G   +AF++   +K      P  + ++++I      GK  EA
Sbjct: 327 FVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKV-GAMPSLFVYNALINSLCKDGKFDEA 385

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           E +F EM E G   N    + LI  + +  + D  +  L ++   GI
Sbjct: 386 ELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGI 432



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 22/229 (9%)

Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
           D  L ++ E+ ++G++P++  Y  ++ +    K   + K + + M  + L  N   Y  L
Sbjct: 210 DMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDL--NVVVYNVL 267

Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL-LAMC------ADVGYTDEAFEIFE 250
           +    + +   + + +   + +KG+  S   Y TL L +C         G  DE  E+  
Sbjct: 268 IHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIEL-- 325

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
                    P     SS++     +GKV +A  + N + + G  P+LFV  +LI    K 
Sbjct: 326 ------GFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKD 379

Query: 311 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLV 354
            + D+       + E G+  +D     L++   +  K +     LGK++
Sbjct: 380 GKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMI 428


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
            STLI+     G     + ++  +   G KP +ITY  L+  + R KR   + ++  ++ 
Sbjct: 50  MSTLIR----KGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVE 105

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +NG+ P+   + +++ A+  +    + + ++R+MKE G + + + +NTL+     VG   
Sbjct: 106 ENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPH 165

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA ++ E M    N +P+  T++ +I     + ++ EA  + ++M+ +G +P++    +L
Sbjct: 166 EAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTL 225

Query: 304 IQCYGKAQRTDDVVRALNRLPELG--ITPDDRFCGCLL 339
            + + +   TD+  R + ++ +    + P++R CG ++
Sbjct: 226 ARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIII 263



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 126/317 (39%), Gaps = 43/317 (13%)

Query: 54  SNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRA--SKLKEKSYDTRAGNVEMAFGLYDR 111
           +N +K S NP+    +T    +  I +   S +   S+ K  S   R G    A  +++ 
Sbjct: 13  NNQSKSSSNPE----ETCDESRCLICMGSNSCQTVISRTKLMSTLIRKGKPHEAVTIFNS 68

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI-------------- 157
              E  +     ++TL+        F+   ++  +++  GVKP+ I              
Sbjct: 69  LTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGK 128

Query: 158 ---------------------TYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYA 195
                                T+N L+   G   RP +   + + M  +G + PN  TY 
Sbjct: 129 VHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYN 188

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
            L++A+      E+  +V  +M   GMQ  +  YNTL    A  G TD A  +   M+  
Sbjct: 189 ILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQY 248

Query: 256 EN-CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
            N  +P+  T   +I      G ++EA     +M E G  PN  V  SLI+ Y     TD
Sbjct: 249 NNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTD 308

Query: 315 DVVRALNRLPELGITPD 331
            V  AL  + E GI PD
Sbjct: 309 GVEEALTLMEEFGIKPD 325



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 11/217 (5%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN   ++ LI+ + T    +   NV  +M   G++P+++TYN L     +       +
Sbjct: 180 VKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAE 239

Query: 177 TIYKEMT--DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            +  +M   +N + PN  T   ++R Y +     + L    +MKE G+  +  ++N+L+ 
Sbjct: 240 RLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIK 299

Query: 235 MCADVGYTD---EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
              D+  TD   EA  + E+       +PD  T+S+++   S  G +   E +F++M++A
Sbjct: 300 GYLDITDTDGVEEALTLMEEF----GIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKA 355

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             EP++   + L + Y +A + D     LN + + G+
Sbjct: 356 EIEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYGL 392



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 1/218 (0%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           N K + +      +I+ Y   GN    L    +MK +GV PN + +N+L+          
Sbjct: 249 NNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTD 308

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
            V+     M + G+ P+  TY++++ A+  +   ++   ++ +M +  ++  +  Y+ L 
Sbjct: 309 GVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILA 368

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G  D+A  +   M +    Q +   F+++I+     GK+  A  ++ +M E G 
Sbjct: 369 KGYVRAGQPDKAEALLNSM-TKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGT 427

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             NL    +LI  YG+A++       L  + E G+ P+
Sbjct: 428 PLNLKTYETLIWGYGEAKQPWKAEELLVTMEESGVAPE 465



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 3/201 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+  A     + +      +P  F++LIK Y    + DG       M+  G+KP+++
Sbjct: 268 KEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVV 327

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ +++    +      + I+ +M    + P+   Y+ L + Y RA   +   ++   M
Sbjct: 328 TYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSM 387

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRG 276
            + G+Q +V ++ T+++     G  D A  ++E M  +E   P +  T+ ++I       
Sbjct: 388 TKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKM--NEMGTPLNLKTYETLIWGYGEAK 445

Query: 277 KVSEAEAMFNEMLEAGFEPNL 297
           +  +AE +   M E+G  P +
Sbjct: 446 QPWKAEELLVTMEESGVAPEM 466


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 1/181 (0%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P+  T+NNL++  G      +   + K+MTDNG+ P+  T+  +L AY         L
Sbjct: 1   IPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKAL 60

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMIT 270
           S +  MK   ++   T  N ++     V    +A EIF  M+   + C+PD  TF+S+I 
Sbjct: 61  SYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIH 120

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + S RG++ + +A+F+ ML  G +PN+    +LI  Y       +     + +   G  P
Sbjct: 121 LYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCP 180

Query: 331 D 331
           D
Sbjct: 181 D 181



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 133/325 (40%), Gaps = 72/325 (22%)

Query: 111 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN---------- 160
           R +  + R D   F+++I LY   G  + C  V+  M A G+KPN+++YN          
Sbjct: 102 REKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHG 161

Query: 161 -------------------------NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
                                    +L+ T GR+++P + + ++  M  N   PN  +Y 
Sbjct: 162 MDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYN 221

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA------------------ 237
           +L+ AYG   Y    + + REM++ G+  +V    TLLA C                   
Sbjct: 222 ALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELR 281

Query: 238 -----------------DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
                            ++G  ++A  ++  M+ ++  +PDS TF+ +I+ C    K  E
Sbjct: 282 GIHLNTIACNSAIGSYMNIGEYEKAINLYRSME-NKTTKPDSVTFTILISGCCRMSKYEE 340

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A   F EML+     +  + +S+I  Y K  +        N L   G  PD      ++N
Sbjct: 341 ALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMIN 400

Query: 341 VMTQTPK-EELGKLVECVEKSNSKL 364
             + +   E++  L + +E +N +L
Sbjct: 401 AYSASEMWEKVCALYQEMEANNIQL 425



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 38/245 (15%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL-------------------- 163
           F+ LI   G+ GN+   L V ++M   GV P+++T+N +L                    
Sbjct: 8   FNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMK 67

Query: 164 ------DT---------MGRAKRPWQVKTIYKEMTD--NGLSPNWNTYASLLRAYGRARY 206
                 DT         + + K+  Q   I+  M +  +   P+  T+ S++  Y     
Sbjct: 68  GTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQ 127

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
            ED  +V+  M  +G++ ++  YN L++  A  G   EAF +F++MK S  C PD  +++
Sbjct: 128 IEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFC-PDVVSYT 186

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           S+I+      + + A  +F+ M     +PNL    +L+  YG        V  L  + + 
Sbjct: 187 SLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQD 246

Query: 327 GITPD 331
           GI P+
Sbjct: 247 GIHPN 251



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 99/229 (43%), Gaps = 3/229 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  E A  LY    N+  + D   F+ LI        ++  L  ++EM  + +  +   Y
Sbjct: 301 GEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIY 360

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           ++++    +  +  + ++++  +  +G  P+  TY +++ AY  +   E   ++Y+EM+ 
Sbjct: 361 SSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEA 420

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKV 278
             +QL     + L+              + E MK  E   P +   F  M++ CS     
Sbjct: 421 NNIQLDSIACSALMKAFNKGNQASNVLILAEIMK--EKGIPFNDANFFEMLSACSILRDW 478

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
            +A  + N M  +    +L  +  L+Q  GK+ +T+ +++   R   LG
Sbjct: 479 RKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALG 527



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/233 (18%), Positives = 99/233 (42%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R    E A   +    + +  +    +S++I  Y   G      +++  +K  G  P+++
Sbjct: 334 RMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLV 393

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  +++    ++   +V  +Y+EM  N +  +    ++L++A+ +     + L +   M
Sbjct: 394 TYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIM 453

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG+  +   +  +L+ C+ +    +A ++   M+ S +      T + ++      GK
Sbjct: 454 KEKGIPFNDANFFEMLSACSILRDWRKATDLINLMEPSFHLVSLG-TINHLLQFLGKSGK 512

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                 +F   +  G   N+   + L++    A +    +  L  + + GI P
Sbjct: 513 TEIMIKLFYRFVALGSSVNINTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQP 565


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 116/236 (49%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G+ + A+  Y    +   RI PN   +S++I         D  + V++ M   GV PN
Sbjct: 210 KGGDPDKAYATYREMLDR--RILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPN 267

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             TY +L+     + +  +     ++M  NG+ PN  TY+S +    +     +   ++ 
Sbjct: 268 CFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFD 327

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
            M ++G++  +T Y++LL   A  G   E   +F+ M  S+  QPD + F+++I   + +
Sbjct: 328 SMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDM-QPDHYVFNTLIYASAKQ 386

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           GKV EA  +F++M + G +PN    ++LI  Y K  R ++ +     +   G++P+
Sbjct: 387 GKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPN 442



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 106/213 (49%), Gaps = 3/213 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  ++ST+I      G+ D     Y EM    + PN++ Y++++  + + +   +   +
Sbjct: 196 PNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEV 255

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M  NG++PN  TY SL+  +  +    + +    +M   G++ +V  Y++ +     
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK 315

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   EA +IF+ M      +PD  T+SS++   +  G + E   +F+ M+++  +P+ +
Sbjct: 316 NGRCTEARKIFDSM-VKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHY 374

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           V  +LI    K  + D+ +   +++ + G+ P+
Sbjct: 375 VFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPN 407



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 80/157 (50%), Gaps = 1/157 (0%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  PN+++Y+ ++D + +   P +    Y+EM D  + PN   Y+S++ A  + +  +  
Sbjct: 193 GCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKA 252

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + V+  M + G+  +   Y +L+      G   EA +  E M  S   +P+  T+SS + 
Sbjct: 253 MEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKM-CSNGVEPNVVTYSSFMD 311

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
                G+ +EA  +F+ M++ G +P++   +SL+  Y
Sbjct: 312 YLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGY 348



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 109/236 (46%), Gaps = 4/236 (1%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLN-VYEEMKAIGVKPNMI 157
           AG +++ F        + +R++P  F+ L+K        D  ++ V   M  +   PN+ 
Sbjct: 103 AGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVF 162

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++  +L  +    R  +   +   M D+G    PN  +Y++++    +    +   + YR
Sbjct: 163 SHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYR 222

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM ++ +  +V +Y++++A        D+A E+ + M  +    P+ +T++S++      
Sbjct: 223 EMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKN-GVTPNCFTYTSLVHGFCSS 281

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G+++EA     +M   G EPN+   +S +    K  R  +  +  + + + G+ PD
Sbjct: 282 GQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPD 337



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 1/110 (0%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
            Y      VEM  GL+D       + D   F+TLI      G  D  + V+ +M+  G+K
Sbjct: 347 GYAIEGALVEM-HGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLK 405

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           PN +TY+ L++   +  R      +++EM  NG+SPN+ TY  +L+   R
Sbjct: 406 PNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFR 455



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 68/155 (43%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  + G    A  ++D       + D   +S+L+  Y   G       +++ M    ++P
Sbjct: 312 YLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQP 371

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +   +N L+    +  +  +   ++ +M   GL PN  TY++L+  Y +    E+ L+++
Sbjct: 372 DHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALF 431

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           +EM   G+  +   YN +L      G T  A E +
Sbjct: 432 QEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFY 466


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 106/207 (51%), Gaps = 1/207 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            G ++ AFG+ D   +     D   +STLI  Y  +G  D  L ++ EM    VKP  +T
Sbjct: 601 VGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVT 660

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y+ +LD + RA R    K ++ EM ++G + + +TY  +L+   R    ++ ++++ ++ 
Sbjct: 661 YSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLG 720

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
              ++  + + NT++     V   +EA ++F  + S+    P++ T+  MI      G V
Sbjct: 721 AMNLKFEIAILNTMIHALYKVKRREEAHDLFASV-SASGLVPNASTYGVMIINLLKEGSV 779

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            EA+ MF+ M + G  P+  +L  +I+
Sbjct: 780 EEADIMFSSMEKTGCAPSSRLLNDIIR 806



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 95/188 (50%), Gaps = 1/188 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +I  Y   G +     +++EM   G+ P+++T+N+L+D++ + KR  +   I+
Sbjct: 341 DEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIF 400

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +   G  P+  +Y+ LL  Y       D  +++  M + G+      +N L+   A  
Sbjct: 401 HSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKR 460

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  DEA  IF +M+  +   P+  T++++I      G++++A    ++M+  G +PN  V
Sbjct: 461 GMMDEALLIFTEMR-GQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVV 519

Query: 300 LTSLIQCY 307
             SLIQ +
Sbjct: 520 YHSLIQGF 527



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 6/199 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D + F+ LI  +   G  D  L ++ EM+  GV PN++TY  ++  + R  R        
Sbjct: 446 DSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKL 505

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYREMKEKGM-QLSVTLYNTLLAMC 236
            +M   GL PN   Y SL++ +    +G+      +  EM ++G+ + ++T +++++   
Sbjct: 506 SQMISIGLKPNTVVYHSLIQGF--CTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSL 563

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
            + G    A ++F ++      +PD +TF+S+I      GK+ +A  + + M+ AG EP+
Sbjct: 564 CNEGRVMNAQDVF-NLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPD 622

Query: 297 LFVLTSLIQCYGKAQRTDD 315
           +   ++LI  Y K+ R DD
Sbjct: 623 VVTYSTLINGYFKSGRIDD 641



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 97/212 (45%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++S L+  Y T G F    N++  M   G+  +   +N L++   +     +   I+
Sbjct: 411 DIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIF 470

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM   G+SPN  TYA+++ A  R     D +    +M   G++ +  +Y++L+      
Sbjct: 471 TEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTH 530

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +A E+  +M      +P+   FSS+I      G+V  A+ +FN ++  G  P++F 
Sbjct: 531 GDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFT 590

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SLI  Y    + D     L+ +   G  PD
Sbjct: 591 FNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPD 622



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 116/241 (48%), Gaps = 8/241 (3%)

Query: 121 PNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           P+  S  + ++G    G      N++ EM   GV PN++TYN+++  + +A+   + + +
Sbjct: 270 PDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELV 329

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            ++M DN + P+  TY +++  Y      ++   +++EM  +G+   +  +N+L+     
Sbjct: 330 LRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCK 389

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
              + EA EIF  + +++  +PD  ++S ++   +  G+  +   +F+ M + G   +  
Sbjct: 390 HKRSKEAAEIFHSI-ATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSH 448

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
               LI  + K    D+ +     +   G++P+      ++  + +     +G+L + +E
Sbjct: 449 CFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCR-----MGRLADAME 503

Query: 359 K 359
           K
Sbjct: 504 K 504



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 145/346 (41%), Gaps = 62/346 (17%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  ++   R +    +   ++T+I      G     +    +M +IG+KPN +
Sbjct: 459 KRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTV 518

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAY---GRARYGEDTLSV 213
            Y++L+          + K +  EM D G+  PN   ++S++ +    GR    +D   V
Sbjct: 519 VYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQD---V 575

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT--- 270
           +  +   G +  +  +N+L+     VG  D+AF + + M S+   +PD  T+S++I    
Sbjct: 576 FNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSA-GTEPDVVTYSTLINGYF 634

Query: 271 ---------------ICSC-----------------RGKVSEAEAMFNEMLEAGFEPNLF 298
                          +C                    G+ S A+ MF+EM+E+G   ++ 
Sbjct: 635 KSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSIS 694

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-----PKEELGKL 353
             T ++Q   +   TD+ +   ++L  + +    +F   +LN M         +EE   L
Sbjct: 695 TYTIILQGLCRNNCTDEAITLFHKLGAMNL----KFEIAILNTMIHALYKVKRREEAHDL 750

Query: 354 VECVEKSN-----SKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
              V  S      S  G ++  LL+E  +E     EA  +F+S+ K
Sbjct: 751 FASVSASGLVPNASTYGVMIINLLKEGSVE-----EADIMFSSMEK 791



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 1/176 (0%)

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS-VYRE 216
           TY  L+D   RA+RP      +  +   GL  +     + L+    A+  ++ LS +   
Sbjct: 167 TYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSMLLHR 226

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G       YNT++        + EA ++   M   + C PD  +++ +I      G
Sbjct: 227 MSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEG 286

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           ++S+A  +FNEM++ G  PN+    S++    KA+  D     L ++ +  I PD+
Sbjct: 287 EISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDE 342


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 149/321 (46%), Gaps = 25/321 (7%)

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           +TL+K Y   G+ D  L ++++M   G+ PN +TY  +++   +     +   IY +M +
Sbjct: 333 TTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKN 392

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
             +SP      SL+R Y +AR  E+   ++ E    G+  +V  YN+LL+     G   E
Sbjct: 393 KDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIA-NVFTYNSLLSWLCKEGKMSE 451

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  I+E M   +  +P   ++++MI     +G +  A  +F EMLE G +PNL   + L+
Sbjct: 452 ACSIWEKM-VRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLM 510

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM-----TQTPKEELGKLVECVEK 359
             Y K   T+      +R+    I P D  C  ++N +     T   ++ L KLV+    
Sbjct: 511 DGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQ---- 566

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNL----NLLE 415
                G++   +     I+G F KE      S++  +      C I +  N+    NL+ 
Sbjct: 567 ----EGFIPTCMTYNCIIDG-FVKEG-----SVNSALAVYTEMCKIGVSPNVFTYTNLIN 616

Query: 416 NACKLLELGLTLEVYTDIQSR 436
             CK   + L L+V  +++++
Sbjct: 617 GFCKSNNMDLALKVMDEMKNK 637



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 115/246 (46%), Gaps = 5/246 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            + G+V  A  +Y      K  + PN F+   LI  +  + N D  L V +EMK  G++ 
Sbjct: 584 VKEGSVNSALAVYTEMC--KIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIEL 641

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           ++  Y  L+D   R         +  E+ + GLSPN   Y+S++  + + +  E  L ++
Sbjct: 642 DVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLH 701

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           + M  +G+   + +Y TL++     G    A E++ +M  ++   PD  T+S +I     
Sbjct: 702 KRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEM-LAKGIMPDLITYSVLIHGLCN 760

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           +G++  A+ +  +M      P +F+  +LI  + K     +  R  N + + G+ PDD  
Sbjct: 761 KGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTT 820

Query: 335 CGCLLN 340
              L+N
Sbjct: 821 YDILVN 826



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 123/236 (52%), Gaps = 6/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + GN++ A+ +Y++ +N+   I P  F+  +LI+ Y  A + +    +++E  A G+  N
Sbjct: 376 KNGNMDKAYEIYNQMKNKD--ISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI-AN 432

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + TYN+LL  + +  +  +  +I+++M   G+ P+  +Y +++  + +    +    V+ 
Sbjct: 433 VFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFV 492

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM EKG++ ++  Y+ L+      G T+ AF +++ M+  EN  P  +T + +I      
Sbjct: 493 EMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMR-GENIAPSDFTCNIIINGLCKA 551

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           G+ SE++    ++++ GF P       +I  + K    +  +     + ++G++P+
Sbjct: 552 GRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPN 607



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 5/236 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPN 155
           + G+ E AFGLYDR R E   I P+ F+  I + G   AG      +  +++   G  P 
Sbjct: 515 KKGDTEYAFGLYDRMRGEN--IAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPT 572

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            +TYN ++D   +         +Y EM   G+SPN  TY +L+  + ++   +  L V  
Sbjct: 573 CMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMD 632

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK KG++L VT+Y  L+      G    A ++  +++      P+   +SSMI+     
Sbjct: 633 EMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEV-GLSPNKVVYSSMISGFRKL 691

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             +  A  +   M+  G   +L + T+LI    K  +          +   GI PD
Sbjct: 692 QNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPD 747



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 107/234 (45%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+++ A G++     +  + +   +S L+  Y   G+ +    +Y+ M+   + P+  
Sbjct: 480 QQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDF 539

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N +++ + +A R  + +   K++   G  P   TY  ++  + +       L+VY EM
Sbjct: 540 TCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEM 599

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G+  +V  Y  L+         D A ++ ++MK ++  + D   + ++I     +G 
Sbjct: 600 CKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMK-NKGIELDVTVYCALIDGFCRKGD 658

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  A  + +E+ E G  PN  V +S+I  + K Q  +  +    R+   GI  D
Sbjct: 659 MVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCD 712



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 100/225 (44%), Gaps = 1/225 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L + +R   +  D   F+ L+  Y      +  ++ +  +    + P +   N  L  + 
Sbjct: 141 LIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELV 200

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     + + +Y +M   G+  +  T + ++RA  R    E+    +RE K KG++L   
Sbjct: 201 KNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDAR 260

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y+ ++        +  A  +  +M+  +   P    F+ +I +C  +GK+ EA  +  E
Sbjct: 261 AYSIVIEAVCKKPDSVAALGLLREMR-DKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGE 319

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           ML  G   N+ V T+L++ Y K    D  +   +++ E GI P++
Sbjct: 320 MLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNN 364



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 12/238 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +E A G +  A+N+   +D  A+S +I+      +    L +  EM+  G  P+ +
Sbjct: 236 REGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEV 295

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +  ++    +  +  +   +  EM   G   N     +L++ Y +    +  L ++ +M
Sbjct: 296 IFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKM 355

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            E G+  +   Y  ++  C   G  D+A+EI+  MK +++  P  +  +S+I     RG 
Sbjct: 356 NENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMK-NKDISPTVFNVNSLI-----RGY 409

Query: 278 V-----SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           +      EA  +F+E +  G   N+F   SL+    K  +  +      ++   G+ P
Sbjct: 410 LKARSPEEASKLFDEAVACGI-ANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRP 466



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 101/227 (44%), Gaps = 1/227 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +  A  +Y++  ++  + D    S +I+     G  +     + E K  GV+ +   Y+ 
Sbjct: 205 IREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSI 264

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +++ + +         + +EM D G  P+   +  ++    +     + + V  EM   G
Sbjct: 265 VIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCG 324

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             ++V +  TL+      G  D A E+F+ M  +  C P++ T++ +I  C   G + +A
Sbjct: 325 KPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGIC-PNNVTYAVIIEWCCKNGNMDKA 383

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             ++N+M      P +F + SLI+ Y KA+  ++  +  +     GI
Sbjct: 384 YEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI 430


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 135/306 (44%), Gaps = 12/306 (3%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            R   V+ A GL+     ++WR  P+A  +++LI  +  AG +   +N+ ++M    + P
Sbjct: 164 ARHNQVDQARGLFFEM--QEWRCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAAIPP 221

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           +  TYNN+++  G A    +   + K+M  NG+ P+  T+  +L A+            +
Sbjct: 222 SRATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYF 281

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICS 273
             MK   +       N ++     VG   +A ++   M+     C PD  T++S+I    
Sbjct: 282 EMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYY 341

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G+V   +A+F+ M+  G +PN+    +L+  Y       +       L + G+ PD  
Sbjct: 342 VCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVV 401

Query: 334 FCGCLLNVMTQTPKEELGKLVECVEKSNS----KLGYVVKLLLEEQDIEGDFKKEATELF 389
               LLN   ++ + E  + V    + NS    K+ Y    L++     G F KEA  L 
Sbjct: 402 SYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSY--NALIDAYGSAGMF-KEAISLL 458

Query: 390 NSISKD 395
           + + KD
Sbjct: 459 HEMEKD 464



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 5/214 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            + G    A  L +  R ++ +  P+   ++++I  Y   G  + C  V++ M A GVKP
Sbjct: 304 VKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKP 363

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N+++YN LL          +   I+K +  NGL P+  +Y +LL AYGR+   E    V+
Sbjct: 364 NIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVF 423

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS- 273
            EM++   + +   YN L+      G   EA  +  +M+  +   PD  + S+++  C  
Sbjct: 424 NEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEME-KDGIPPDVVSISTLLAACGR 482

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307
           CR + ++ + +       G E N+    S I  Y
Sbjct: 483 CR-QTTKIDTVLEAAKFRGIELNIVAYNSGIGSY 515



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 129/315 (40%), Gaps = 71/315 (22%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G VE    ++D    E  + +  +++ L+  Y + G       +++ +K  G++P++++Y
Sbjct: 344 GQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSY 403

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             LL+  GR+ +P + + ++ EM  N   PN  +Y +L+ AYG A   ++ +S+  EM++
Sbjct: 404 TTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEK 463

Query: 220 KGMQLSVTLYNTLLAMCA-----------------------------------DVGYTDE 244
            G+   V   +TLLA C                                      G  ++
Sbjct: 464 DGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEK 523

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMIT---------------------------------I 271
           A +++  M +S N  PD+ T++ +I+                                 I
Sbjct: 524 ALKLYATMMAS-NVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLI 582

Query: 272 CSC--RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
           CS   + K++EAE+ F  M  +G  P++   T++IQ Y        V      +    I 
Sbjct: 583 CSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAIL 642

Query: 330 PDDRFCGCLLNVMTQ 344
           PD   C  L+  + +
Sbjct: 643 PDAIICSSLMEALNK 657



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 109/285 (38%), Gaps = 69/285 (24%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AFG++   +    R D  +++TL+  YG +   +    V+ EM+    KPN ++YN L+D
Sbjct: 384 AFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALID 443

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G A    +  ++  EM  +G+ P+  + ++LL A GR R      +V    K +G++L
Sbjct: 444 AYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIEL 503

Query: 225 SVTL-----------------------------------YNTLLAMCADVGYTDEAFEIF 249
           ++                                     YN L++    +G   E+ + F
Sbjct: 504 NIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFF 563

Query: 250 EDM----------------------------------KSSENCQPDSWTFSSMITICSCR 275
           EDM                                    +  C PD  T+++MI   +  
Sbjct: 564 EDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDH 623

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           G  +    +F EM      P+  + +SL++   K  +   V++ +
Sbjct: 624 GSWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQLM 668



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 1/140 (0%)

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
           + Y  +++ + R    +    ++ EM+E   +    +YN+L+   A  G    A  I +D
Sbjct: 154 DIYGMMIQLHARHNQVDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDD 213

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M  +    P   T+++++  C   G   +A  +  +M+  G  P+L     ++  +    
Sbjct: 214 MLRAA-IPPSRATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGF 272

Query: 312 RTDDVVRALNRLPELGITPD 331
           +          +    I PD
Sbjct: 273 QYTKATGYFEMMKGANIAPD 292


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 1/227 (0%)

Query: 105  AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
            A  LY +  +E +   P  +  L+      GN +    +++EM   G +PN   YN LL+
Sbjct: 855  AINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLN 914

Query: 165  TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                A    +V  +++ M + G++P+  +Y  ++          D LS ++++ + G++ 
Sbjct: 915  GYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEP 974

Query: 225  SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
             +  YN L+      G  +EA  ++ DM+  +   P+ +T++S+I      GK +EA  M
Sbjct: 975  DLITYNLLIHGLGKSGRLEEALSLYNDMEK-KGIAPNLYTYNSLILYLGKAGKAAEAGKM 1033

Query: 285  FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + E+L  G++PN+F   +LI+ Y  +   ++   A  R+   G  P+
Sbjct: 1034 YEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPN 1080



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 3/214 (1%)

Query: 120  DPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
            DP+ F+   ++   G +   +  L + EEM   G K   +TYN ++  + ++K   +   
Sbjct: 798  DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAIN 857

Query: 178  IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
            +Y ++   G SP   TY  LL    +    ED  +++ EM E G + +  +YN LL    
Sbjct: 858  LYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYR 917

Query: 238  DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
              G T++  E+FE M   +   PD  +++ +I      G++++  + F ++ + G EP+L
Sbjct: 918  IAGDTEKVCELFESM-VEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDL 976

Query: 298  FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                 LI   GK+ R ++ +   N + + GI P+
Sbjct: 977  ITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPN 1010



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 105/199 (52%), Gaps = 1/199 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + GN+E A  L+D         +   ++ L+  Y  AG+ +    ++E M   G+ P++ 
Sbjct: 883  KDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIK 942

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +Y  ++DT+    R     + +K++TD GL P+  TY  L+   G++   E+ LS+Y +M
Sbjct: 943  SYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 1002

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++KG+  ++  YN+L+      G   EA +++E++  ++  +P+ +T++++I   S  G 
Sbjct: 1003 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEEL-LAKGWKPNVFTYNALIRGYSVSGS 1061

Query: 278  VSEAEAMFNEMLEAGFEPN 296
               A A +  M+  G  PN
Sbjct: 1062 PENAFAAYGRMIVGGCRPN 1080



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 101/213 (47%), Gaps = 3/213 (1%)

Query: 121 PNAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN ++ +  I  +G +G     L  YE MK+ G+ P+++  N +L  + +  R    K +
Sbjct: 414 PNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRV 473

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E+   G+SP+  TY  +++   +A   ++ + ++ EM E      V   N+L+ M   
Sbjct: 474 FHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYK 533

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  +EA++IF ++K   N +P   T+++++      GKV E   +   M    F PN+ 
Sbjct: 534 AGRGNEAWKIFYELKEM-NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNII 592

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +++ C  K    +  +  L  +   G  PD
Sbjct: 593 TYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPD 625



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 4/226 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+V   F L  R   +  + +   F T+    G  G           MK  G+  N  
Sbjct: 116 RVGDVAQVFDLMQR---QIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAY 172

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + ++    +   +YK M  +G+ P   TY+ L+ A+G+ R  E  + +  EM
Sbjct: 173 TYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEM 232

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G++ +V  Y   + +    G  +EA+ I   M+  E C+PD  T + +I I    G+
Sbjct: 233 EARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKME-EEGCKPDVVTNTVLIQILCDAGR 291

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           +++A+ +F +M  +  +P+     +L+   G +  +  V    N L
Sbjct: 292 LADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNAL 337



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 3/231 (1%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            +E    + +   N+ ++     ++T+I     +   D  +N+Y ++ + G  P   TY  
Sbjct: 817  IEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGP 876

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            LLD + +       + ++ EM + G  PN   Y  LL  Y  A   E    ++  M E+G
Sbjct: 877  LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 936

Query: 222  MQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
            M   +  Y  ++  +CAD G  ++    F+ + +    +PD  T++ +I      G++ E
Sbjct: 937  MNPDIKSYTVVIDTLCAD-GRLNDGLSYFKQL-TDMGLEPDLITYNLLIHGLGKSGRLEE 994

Query: 281  AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            A +++N+M + G  PNL+   SLI   GKA +  +  +    L   G  P+
Sbjct: 995  ALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPN 1045



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 1/254 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           + E   GL         R +  +++  I++ G AG  +    +  +M+  G KP+++T  
Sbjct: 221 DAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNT 280

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+  +  A R    K ++ +M  +   P+  TY +LL   G +        ++  +K  
Sbjct: 281 VLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKAD 340

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   +V  Y   +     VG  DEA ++F++MK  +   P  ++++S+I+      + + 
Sbjct: 341 GYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQ-KGIIPQQYSYNSLISGFLKADRFNR 399

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A  +FN M   G  PN +     I  +GK+  +   ++    +   GI PD      +L 
Sbjct: 400 ALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLY 459

Query: 341 VMTQTPKEELGKLV 354
            + +T +  + K V
Sbjct: 460 GLAKTGRLGMAKRV 473



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 106/235 (45%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A+ +  +   E  + D    + LI++   AG      +V+ +MKA   KP+ +
Sbjct: 253 QAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRV 312

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD  G +     V  I+  +  +G + N  +Y + + A  +    ++ L V+ EM
Sbjct: 313 TYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEM 372

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+KG+      YN+L++        + A E+F  M +     P+ +T    I      G+
Sbjct: 373 KQKGIIPQQYSYNSLISGFLKADRFNRALELFNHM-NIHGPTPNGYTHVLFINYHGKSGE 431

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             +A   +  M   G  P++    +++    K  R     R  + L  +GI+PD+
Sbjct: 432 SLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDN 486



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 88/170 (51%), Gaps = 1/170 (0%)

Query: 99   AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            AG+ E    L++    +    D  +++ +I      G  +  L+ ++++  +G++P++IT
Sbjct: 919  AGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLIT 978

Query: 159  YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            YN L+  +G++ R  +  ++Y +M   G++PN  TY SL+   G+A    +   +Y E+ 
Sbjct: 979  YNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELL 1038

Query: 219  EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
             KG + +V  YN L+   +  G  + AF  +  M     C+P+S T+  +
Sbjct: 1039 AKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVG-GCRPNSSTYMQL 1087



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 14/299 (4%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIG 151
           +Y  ++G    A   Y+  +++   I P+  +    LYG A  G       V+ E+KA+G
Sbjct: 424 NYHGKSGESLKALKRYELMKSKG--IVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMG 481

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P+ ITY  ++    +A    +   I+ EM +N  +P+     SL+    +A  G +  
Sbjct: 482 ISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAW 541

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            ++ E+KE  ++ +   YNTLLA     G   E  ++ E M S+ +  P+  T+++++  
Sbjct: 542 KIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSN-SFPPNIITYNTVLD- 599

Query: 272 CSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           C C+ G+V+ A  M   M   G  P+L    +++    K  R D+      ++ ++ + P
Sbjct: 600 CLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKV-LAP 658

Query: 331 D-DRFCGCLLN-VMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 387
           D    C  L + V +   KE L  + E + + +SK+       L    +EG  K++ TE
Sbjct: 659 DYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSL----MEGILKRDGTE 713



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
            ++G +E A  LY+    EK  I PN   +++LI   G AG       +YEE+ A G KPN
Sbjct: 988  KSGRLEEALSLYNDM--EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPN 1045

Query: 156  MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
            + TYN L+     +  P      Y  M   G  PN +TY  L
Sbjct: 1046 VFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 19/224 (8%)

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+ L    YN L+    D    D A E+F +MK    C PD +T+  ++       ++ +
Sbjct: 761 GVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRL-GCDPDEFTYHLILDAMGKSMRIED 819

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              +  EM   G++       ++I    K++  D+ +    +L   G +P     G LL+
Sbjct: 820 MLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLD 879

Query: 341 VMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK- 394
            + +    E       +++EC  + N     +  +LL    I GD +K   ELF S+ + 
Sbjct: 880 GLLKDGNIEDAEALFDEMLECGCEPNCA---IYNILLNGYRIAGDTEK-VCELFESMVEQ 935

Query: 395 ----DVKKAYCNCLIDLCVNLNL---LENACKLLELGLTLEVYT 431
               D+ K+Y   +  LC +  L   L    +L ++GL  ++ T
Sbjct: 936 GMNPDI-KSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLIT 978


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 110/229 (48%), Gaps = 2/229 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + F  +++ Y  A      +  +E+M   G+K ++  YN L+D + ++K+  +   I+KE
Sbjct: 214 DTFRLIVRRYARARKVKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKE 273

Query: 182 MTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           M  NG   P+  TY  L+  +G  +      SVY+EM + G+Q  V  Y  L++     G
Sbjct: 274 MKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSG 333

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             DEA ++F +M+++  C P    +  +I       ++ EA   F     +GF   +   
Sbjct: 334 KCDEAIKVFREMETN-GCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTC 392

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
            +++  Y ++ +     + ++ + + GI P+ R    +L+ + ++ K E
Sbjct: 393 NAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIE 441



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 115/245 (46%), Gaps = 2/245 (0%)

Query: 97  TRAGNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +++  V+ A  ++ +  RN ++  D   ++ L++ +G   +     +VY+EM   G++P+
Sbjct: 259 SKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPD 318

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ Y  L+ +  ++ +  +   +++EM  NG  P+ + Y  L+   G     ++ L  + 
Sbjct: 319 VVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEALKYFE 378

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
             K  G  + V   N ++           AF++ ++M+ S    P+S T+  ++      
Sbjct: 379 LSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKS-GIGPNSRTYDIILHHLIKS 437

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            K+ EA  +F  M + G EP L   T ++  +   +R D  ++  N++ E G+ P     
Sbjct: 438 QKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMF 497

Query: 336 GCLLN 340
             L+N
Sbjct: 498 SALIN 502



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 1/236 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G  + A  ++           P+ +  LI   G+    D  L  +E  KA G    + 
Sbjct: 331 KSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVP 390

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N ++    R+ +      +  EM  +G+ PN  TY  +L    +++  E+  +V++ M
Sbjct: 391 TCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGM 450

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            + G +  +  Y  ++ M       D A +++  MK  +   P    FS++I       +
Sbjct: 451 SKDGCEPQLNTYTMMVGMFCSNERVDVALKVWNQMK-EKGVLPCMHMFSALINGLCFENR 509

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           + EA A F EML+ G  P   + ++L +   +  R         +L EL  TP  R
Sbjct: 510 LEEACAYFQEMLDRGIRPPGQLFSNLKEALIEGGRISLAQEMALKLDELRKTPMRR 565


>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 426

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 130/288 (45%), Gaps = 39/288 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++   R  K  +D    + +I +YG  G       ++  M+ IG++PN+++YN LL 
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLR 192

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G A+   +   +++ M    +  N  TY S++  YG+    E   ++ +EM+ +G++ 
Sbjct: 193 VYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEP 252

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----------------------------- 255
           +   Y+T++++   VG  D A  +F+ +++S                             
Sbjct: 253 NSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAKRLL 312

Query: 256 -ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
            E  +PD+    + I I +  G++ EA  +F + ++AG   ++ V   LI  + K ++  
Sbjct: 313 HELKRPDNIPRDTAIHILAAAGRLEEATWVFRQAIDAGEVKDITVFERLIHLFSKYKKYS 372

Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 362
           +VV   +++ E    PD      +LN          GKL E  EK+NS
Sbjct: 373 NVVEVFDKMRERRYFPDSNVIALVLNA--------YGKLHE-FEKANS 411



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y S++  + +A+   +  S+  EM+  G+      Y TLL M  + 
Sbjct: 68  SRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KRFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 118/248 (47%), Gaps = 8/248 (3%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFAPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N++++   +AK   + +++  EM   G+ P+  +Y +LL  +   +   + LSV+ EM+E
Sbjct: 83  NSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVENKRFLEALSVFAEMRE 142

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
               L +T  N ++ +   +G   EA ++F  M+     +P+  ++++++ +        
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKI-GIEPNVVSYNTLLRVYGDAELFG 201

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           EA  +F  M     E N+    S++  YGK    +     +  +   GI P+      ++
Sbjct: 202 EAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 340 NVMTQTPK 347
           ++  +  K
Sbjct: 262 SIWVKVGK 269



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 106/227 (46%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++++I ++  A  F    ++  EM+  GV P+ ++Y  LL 
Sbjct: 63  AISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLT 122

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                KR  +  +++ EM +     +  T   ++  YG+    ++   ++  M++ G++ 
Sbjct: 123 MHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEP 182

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +V  YNTLL +  D     EA  +F  M+  +N + +  T++SM+ I     +  +A  +
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EM   G EPN    +++I  + K  + D       +L   G+  D
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEID 288



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   ++SMI +        EA ++ NEM  AG  P+    T+L
Sbjct: 62  KAISIFSRLKRS-GFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  + + +R  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 83/179 (46%), Gaps = 13/179 (7%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I+PN+  +ST+I ++   G  D    ++++++  GV+ + + Y  ++    RA      K
Sbjct: 250 IEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAK 309

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            +  E+      P  +T   +L A GR    E+   V+R+  + G    +T++  L+ + 
Sbjct: 310 RLLHELKRPDNIPR-DTAIHILAAAGRL---EEATWVFRQAIDAGEVKDITVFERLIHLF 365

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE---AEAMFNEMLEAG 292
           +         E+F+ M+      PDS   + +  + +  GK+ E   A +++ EM + G
Sbjct: 366 SKYKKYSNVVEVFDKMRERRYF-PDS---NVIALVLNAYGKLHEFEKANSVYMEMQDEG 420



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 10/160 (6%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +GKT    K+   +     R  +    +Y T      + G ++ A  L+ + RN    ID
Sbjct: 229 YGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEID 288

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
              + T+I  Y  AG       +  E+K    +P+ I  +  +  +  A R  +   +++
Sbjct: 289 QVLYQTMIVAYERAGLVAHAKRLLHELK----RPDNIPRDTAIHILAAAGRLEEATWVFR 344

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
           +  D G   +   +  L+  + + +   + + V+ +M+E+
Sbjct: 345 QAIDAGEVKDITVFERLIHLFSKYKKYSNVVEVFDKMRER 384


>gi|297839881|ref|XP_002887822.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333663|gb|EFH64081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 407

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 112/218 (51%), Gaps = 4/218 (1%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
           +++ +   G +  C   +++M   GV  ++ +Y+  +D M ++ +PW+   +YKEM    
Sbjct: 155 ILRGWSKLGWWGKCKEYWDKMDTEGVPKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRR 214

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
           +  +   Y +++RA G ++  E  + V+REM+E+G + +V  +NT++ +  + G   +A+
Sbjct: 215 IKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAY 274

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
            + ++M   + CQPDS ++  + +      K SE  ++F  M+ +G  P +     L++ 
Sbjct: 275 RMLDEM-PKKGCQPDSISYMCLFSRLE---KPSEILSLFGRMIRSGVRPKMDTYVMLMRK 330

Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           + +      V+     + E G TPD      +++ + Q
Sbjct: 331 FERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQ 368



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 32/187 (17%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G    A  LY   ++ + ++D  A++T+I+  G +   +  + V+ EM+  G +PN+ 
Sbjct: 196 KSGKPWKAVKLYKEMKSRRIKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVA 255

Query: 158 TYN----------------NLLDTM----------------GRAKRPWQVKTIYKEMTDN 185
           T+N                 +LD M                 R ++P ++ +++  M  +
Sbjct: 256 THNTIIKLLCEDGRMRDAYRMLDEMPKKGCQPDSISYMCLFSRLEKPSEILSLFGRMIRS 315

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G+ P  +TY  L+R + R  + +  L V++ MKE G       YN ++      G  D A
Sbjct: 316 GVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMA 375

Query: 246 FEIFEDM 252
            E  E+M
Sbjct: 376 REYEEEM 382


>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Brachypodium distachyon]
          Length = 606

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 114/229 (49%), Gaps = 2/229 (0%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P +  T   L    G++    ++Y++M+  G+KP++++Y+ L+   G+A+R  +   +++
Sbjct: 281 PQSTVTFNSLMSFEGDYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFE 340

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM D G+ P   +Y  LL A+  +   E+  +V++ M+   ++  +  Y T+L    +  
Sbjct: 341 EMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCSYTTMLLAYVNAS 400

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             D A + F  +K  +  +P+   + +++   S    V +   ++  M   G EPN  + 
Sbjct: 401 DMDGAEKFFRRIK-EDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMRMQGVEPNQTIF 459

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
           T+++  +G+     + V   N +   G  PD +    LL+ + +TP+E+
Sbjct: 460 TTIMDVHGRNSDFGNAVIWFNEMETRGYPPDKKAKNILLS-LAKTPEEQ 507



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 99/197 (50%), Gaps = 1/197 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+ +    +YD+ +    + D  ++S LIK YG A   +    V+EEM   G++P   +Y
Sbjct: 295 GDYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSY 354

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N LLD    +    + +T++K M  + + P+  +Y ++L AY  A   +     +R +KE
Sbjct: 355 NILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKE 414

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++ +V +Y TL+   + +   ++   ++E M+  +  +P+   F++++ +        
Sbjct: 415 DGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERMR-MQGVEPNQTIFTTIMDVHGRNSDFG 473

Query: 280 EAEAMFNEMLEAGFEPN 296
            A   FNEM   G+ P+
Sbjct: 474 NAVIWFNEMETRGYPPD 490



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 159/366 (43%), Gaps = 38/366 (10%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W      F  L+  YG  G+F     V + M   G +P +I+   L++  GRAK+  + +
Sbjct: 137 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAE 196

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM---KEKGMQLSVTLYNTLL 233
            ++  M  +G  P+  TY  +L++       ++  +++ ++   K    +    +++ ++
Sbjct: 197 AVFHRMQTSGPEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMI 256

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDS-WTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
            M    G   +A ++F  M  SE   P S  TF+S++   S  G   E  +++++M  AG
Sbjct: 257 YMYKKSGDYAQARKLFAQM--SERGIPQSTVTFNSLM---SFEGDYKEVSSIYDQMQRAG 311

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP-KEELG 351
            +P++   + LI+ YGKA+R ++       + + GI P  +    LL+    +   EE  
Sbjct: 312 LKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQ 371

Query: 352 KLVECVEKSNSK---LGYVVKLL--LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 406
            + + + +   +     Y   LL  +   D++G     A + F  I +D          +
Sbjct: 372 TVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDG-----AEKFFRRIKED------GLRPN 420

Query: 407 LCVNLNLLENACKLLELGLTLEVY--TDIQSRSPTQ------WSLHLKSLSLGAALTALH 458
           + V   L++   KL  +   + VY    +Q   P Q        +H ++   G A+    
Sbjct: 421 VVVYGTLMKGYSKLDNVEKVMRVYERMRMQGVEPNQTIFTTIMDVHGRNSDFGNAV---- 476

Query: 459 IWINDL 464
           IW N++
Sbjct: 477 IWFNEM 482



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 69/150 (46%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G VE A  ++   R  +   D  +++T++  Y  A + DG    +  +K  G++PN++ 
Sbjct: 364 SGLVEEAQTVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVVV 423

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+    +     +V  +Y+ M   G+ PN   + +++  +GR     + +  + EM+
Sbjct: 424 YGTLMKGYSKLDNVEKVMRVYERMRMQGVEPNQTIFTTIMDVHGRNSDFGNAVIWFNEME 483

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
            +G        N LL++        EA E+
Sbjct: 484 TRGYPPDKKAKNILLSLAKTPEEQQEANEL 513


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 1/227 (0%)

Query: 105  AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
            A  LY +  +E +   P  +  L+      GN +    +++EM   G +PN   YN LL+
Sbjct: 855  AINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLN 914

Query: 165  TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                A    +V  +++ M + G++P+  +Y  ++          D LS ++++ + G++ 
Sbjct: 915  GYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEP 974

Query: 225  SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
             +  YN L+      G  +EA  ++ DM+  +   P+ +T++S+I      GK +EA  M
Sbjct: 975  DLITYNLLIHGLGKSGRLEEALSLYNDMEK-KGIAPNLYTYNSLILYLGKAGKAAEAGKM 1033

Query: 285  FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + E+L  G++PN+F   +LI+ Y  +   ++   A  R+   G  P+
Sbjct: 1034 YEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPN 1080



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 3/214 (1%)

Query: 120  DPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
            DP+ F+   ++   G +   +  L + EEM   G K   +TYN ++  + ++K   +   
Sbjct: 798  DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAIN 857

Query: 178  IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
            +Y ++   G SP   TY  LL    +    ED  +++ EM E G + +  +YN LL    
Sbjct: 858  LYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYR 917

Query: 238  DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
              G T++  E+FE M   +   PD  +++ +I      G++++  + F ++ + G EP+L
Sbjct: 918  IAGDTEKVCELFESM-VEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDL 976

Query: 298  FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                 LI   GK+ R ++ +   N + + GI P+
Sbjct: 977  ITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPN 1010



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 105/199 (52%), Gaps = 1/199 (0%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
            + GN+E A  L+D         +   ++ L+  Y  AG+ +    ++E M   G+ P++ 
Sbjct: 883  KDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIK 942

Query: 158  TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +Y  ++DT+    R     + +K++TD GL P+  TY  L+   G++   E+ LS+Y +M
Sbjct: 943  SYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 1002

Query: 218  KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++KG+  ++  YN+L+      G   EA +++E++  ++  +P+ +T++++I   S  G 
Sbjct: 1003 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEEL-LAKGWKPNVFTYNALIRGYSVSGS 1061

Query: 278  VSEAEAMFNEMLEAGFEPN 296
               A A +  M+  G  PN
Sbjct: 1062 PENAFAAYGRMIVGGCRPN 1080



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 101/213 (47%), Gaps = 3/213 (1%)

Query: 121 PNAFSTL--IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN ++ +  I  +G +G     L  YE MK+ G+ P+++  N +L  + +  R    K +
Sbjct: 414 PNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRV 473

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + E+   G+SP+  TY  +++   +A   ++ + ++ EM E      V   N+L+ M   
Sbjct: 474 FHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYK 533

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  +EA++IF ++K   N +P   T+++++      GKV E   +   M    F PN+ 
Sbjct: 534 AGRGNEAWKIFYELKEM-NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNII 592

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              +++ C  K    +  +  L  +   G  PD
Sbjct: 593 TYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPD 625



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 4/226 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+V   F L  R   +  + +   F T+    G  G           MK  G+  N  
Sbjct: 116 RVGDVAQVFDLMQR---QIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAY 172

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + ++    +   +YK M  +G+ P   TY+ L+ A+G+ R  E  + +  EM
Sbjct: 173 TYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEM 232

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +G++ +V  Y   + +    G  +EA+ I   M+  E C+PD  T + +I I    G+
Sbjct: 233 EARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKME-EEGCKPDVVTNTVLIQILCDAGR 291

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           +++A+ +F +M  +  +P+     +L+   G +  +  V    N L
Sbjct: 292 LADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNAL 337



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 3/231 (1%)

Query: 102  VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
            +E    + +   N+ ++     ++T+I     +   D  +N+Y ++ + G  P   TY  
Sbjct: 817  IEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGP 876

Query: 162  LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
            LLD + +       + ++ EM + G  PN   Y  LL  Y  A   E    ++  M E+G
Sbjct: 877  LLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQG 936

Query: 222  MQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
            M   +  Y  ++  +CAD G  ++    F+ + +    +PD  T++ +I      G++ E
Sbjct: 937  MNPDIKSYTVVIDTLCAD-GRLNDGLSYFKQL-TDMGLEPDLITYNLLIHGLGKSGRLEE 994

Query: 281  AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            A +++N+M + G  PNL+   SLI   GKA +  +  +    L   G  P+
Sbjct: 995  ALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPN 1045



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 1/254 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           + E   GL         R +  +++  I++ G AG  +    +  +M+  G KP+++T  
Sbjct: 221 DAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNT 280

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+  +  A R    K ++ +M  +   P+  TY +LL   G +        ++  +K  
Sbjct: 281 VLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKAD 340

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G   +V  Y   +     VG  DEA ++F++MK  +   P  ++++S+I+      + + 
Sbjct: 341 GYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQ-KGIIPQQYSYNSLISGFLKADRFNR 399

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A  +FN M   G  PN +     I  +GK+  +   ++    +   GI PD      +L 
Sbjct: 400 ALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLY 459

Query: 341 VMTQTPKEELGKLV 354
            + +T +  + K V
Sbjct: 460 GLAKTGRLGMAKRV 473



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 106/235 (45%), Gaps = 1/235 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG +E A+ +  +   E  + D    + LI++   AG      +V+ +MKA   KP+ +
Sbjct: 253 QAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRV 312

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LLD  G +     V  I+  +  +G + N  +Y + + A  +    ++ L V+ EM
Sbjct: 313 TYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEM 372

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           K+KG+      YN+L++        + A E+F  M +     P+ +T    I      G+
Sbjct: 373 KQKGIIPQQYSYNSLISGFLKADRFNRALELFNHM-NIHGPTPNGYTHVLFINYHGKSGE 431

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
             +A   +  M   G  P++    +++    K  R     R  + L  +GI+PD+
Sbjct: 432 SLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDN 486



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 88/170 (51%), Gaps = 1/170 (0%)

Query: 99   AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            AG+ E    L++    +    D  +++ +I      G  +  L+ ++++  +G++P++IT
Sbjct: 919  AGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLIT 978

Query: 159  YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            YN L+  +G++ R  +  ++Y +M   G++PN  TY SL+   G+A    +   +Y E+ 
Sbjct: 979  YNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELL 1038

Query: 219  EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
             KG + +V  YN L+   +  G  + AF  +  M     C+P+S T+  +
Sbjct: 1039 AKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVG-GCRPNSSTYMQL 1087



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 14/299 (4%)

Query: 94  SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIG 151
           +Y  ++G    A   Y+  +++   I P+  +    LYG A  G       V+ E+KA+G
Sbjct: 424 NYHGKSGESLKALKRYELMKSKG--IVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMG 481

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           + P+ ITY  ++    +A    +   I+ EM +N  +P+     SL+    +A  G +  
Sbjct: 482 ISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAW 541

Query: 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
            ++ E+KE  ++ +   YNTLLA     G   E  ++ E M S+ +  P+  T+++++  
Sbjct: 542 KIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSN-SFPPNIITYNTVLD- 599

Query: 272 CSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           C C+ G+V+ A  M   M   G  P+L    +++    K  R D+      ++ ++ + P
Sbjct: 600 CLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKV-LAP 658

Query: 331 D-DRFCGCLLN-VMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE 387
           D    C  L + V +   KE L  + E + + +SK+       L    +EG  K++ TE
Sbjct: 659 DYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSL----MEGILKRDGTE 713



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 98   RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
            ++G +E A  LY+    EK  I PN   +++LI   G AG       +YEE+ A G KPN
Sbjct: 988  KSGRLEEALSLYNDM--EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPN 1045

Query: 156  MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
            + TYN L+     +  P      Y  M   G  PN +TY  L
Sbjct: 1046 VFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 106/248 (42%), Gaps = 19/248 (7%)

Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
           ++R + + +       + ++ +  G+ L    YN L+    D    D A E+F +MK   
Sbjct: 737 IIRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRL- 795

Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
            C PD +T+  ++       ++ +   +  EM   G++       ++I    K++  D+ 
Sbjct: 796 GCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEA 855

Query: 317 VRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLL 371
           +    +L   G +P     G LL+ + +    E       +++EC  + N     +  +L
Sbjct: 856 INLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCA---IYNIL 912

Query: 372 LEEQDIEGDFKKEATELFNSISK-----DVKKAYCNCLIDLCVNLNL---LENACKLLEL 423
           L    I GD +K   ELF S+ +     D+ K+Y   +  LC +  L   L    +L ++
Sbjct: 913 LNGYRIAGDTEK-VCELFESMVEQGMNPDI-KSYTVVIDTLCADGRLNDGLSYFKQLTDM 970

Query: 424 GLTLEVYT 431
           GL  ++ T
Sbjct: 971 GLEPDLIT 978


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 108/223 (48%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+TLI  Y      D  + + + M   GV P++ITYN++L+ + +A +   V   +
Sbjct: 459 DVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTF 518

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           K M + G  PN  TY  L  ++ +AR  E+ L++  EM+ KG+   V  + TL+    D 
Sbjct: 519 KLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDN 578

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D A+++F+ +           T++ MI   + +  ++ AE +FN+M E GF P+ + 
Sbjct: 579 GDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYT 638

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
              +I  + K    +     L    E G+ P     G +LN +
Sbjct: 639 YRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCL 681



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 106/229 (46%), Gaps = 7/229 (3%)

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           YG  G     ++V+E M     +P++ +YN +++ +   +   Q   +Y  M D G+ P+
Sbjct: 86  YGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPD 145

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             T+   ++++ R         +   M  +G + S   Y T++    +  +  EA E+FE
Sbjct: 146 VYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFE 205

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
           +M     C PD   F+ +I     +G V E+E + N++L+ G  PNLF +   IQ + + 
Sbjct: 206 EMLGLGIC-PDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQR 264

Query: 311 QRTDDVVRALNRLPELGITPD-----DRFCGCLLNVMTQTPKEELGKLV 354
              ++ +R L+ +   G+TPD        CG   N      +  L K+V
Sbjct: 265 AMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMV 312



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 1/199 (0%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G +P+  TYN+++D   +         I ++    G  P+ +TY SL+    +    +  
Sbjct: 315 GYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRA 374

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           ++V+ E  EKG++ ++ L NTL+   +  G   +A ++  +M S   C PD WT++ +I 
Sbjct: 375 INVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEM-SENGCSPDIWTYNLVIN 433

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G VS+A+ +  + +  G  P++F   +LI  Y K  + D+ +  ++R+   G++P
Sbjct: 434 GLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSP 493

Query: 331 DDRFCGCLLNVMTQTPKEE 349
           D      +LN + +  K E
Sbjct: 494 DVITYNSILNGLCKAGKYE 512



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D + + +LI      G+ D  +NV+ E    G+KPN++  N L+  + +     Q   + 
Sbjct: 354 DESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLM 413

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM++NG SP+  TY  ++    +     D  ++  +   KG    V  +NTL+      
Sbjct: 414 NEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKK 473

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              D A EI + M  +    PD  T++S++      GK  +    F  M+E G  PN+  
Sbjct: 474 LKLDNAIEIVDRM-WNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIIT 532

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              L + + KA++ ++ +  +  +   G+TPD
Sbjct: 533 YNILTESFCKARKVEEALNLIEEMQNKGLTPD 564



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 112/247 (45%), Gaps = 8/247 (3%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  + DR  N     D   +++++     AG ++  +  ++ M   G  PN+ITYN L +
Sbjct: 479 AIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTE 538

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQ 223
           +  +A++  +   + +EM + GL+P+   + +L++ +      +    +++ + E+    
Sbjct: 539 SFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFS 598

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
            ++  YN ++   A     + A ++F  M       PDS+T+  MI      G ++   +
Sbjct: 599 HTIATYNIMINAFAGKLNMNMAEKLFNKM-CENGFSPDSYTYRVMIDGFCKTGNINSGYS 657

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
                +E G  P+L     ++ C    +R  + V  ++ +   GI P+      ++N + 
Sbjct: 658 FLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPE------VVNTIF 711

Query: 344 QTPKEEL 350
           +  K+E+
Sbjct: 712 EADKKEV 718



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 39/225 (17%)

Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
           ++EEM  +G+ P+++ +N L+ T+ R     + + +  ++   G+SPN  T    ++ + 
Sbjct: 203 LFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFC 262

Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPD 261
           +     + + +   +  +G+   V  YNTL+  +C +     EA      M  +E  +PD
Sbjct: 263 QRAMLNEAIRLLDGVG-RGLTPDVITYNTLICGLCKNFKVV-EAEHYLRKM-VNEGYEPD 319

Query: 262 SWTFSSMI-----------------------------TICS-----CR-GKVSEAEAMFN 286
            +T++S+I                             T CS     C+ G +  A  +FN
Sbjct: 320 GFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFN 379

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           E +E G +PNL +  +L++   +       ++ +N + E G +PD
Sbjct: 380 EAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPD 424



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 41/219 (18%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM---TDNGLSPNWNTYASLLRAYGRARYG 207
           G K  ++TY  +++ +G       ++ +  E     DNGL      Y   +R YGR    
Sbjct: 35  GFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEG--VYIGAMRNYGRKGKI 92

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF-- 265
           ++ + V+  M     + SV  YN ++ +  +  Y D+A +++  M+  +   PD +TF  
Sbjct: 93  QEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMR-DKGIVPDVYTFTI 151

Query: 266 ---------------------------SSMITICSCRGKV------SEAEAMFNEMLEAG 292
                                      SS +  C+  G         EA  +F EML  G
Sbjct: 152 RMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLG 211

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             P++     LI    +     +  R LN++ + G++P+
Sbjct: 212 ICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPN 250



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/285 (20%), Positives = 108/285 (37%), Gaps = 43/285 (15%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A  +++R           +++ ++ +      FD    VY  M+  G+ P++ 
Sbjct: 88  RKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVY 147

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+   + +  R  RP   + +   M   G   +   Y +++  +    +  +   ++ EM
Sbjct: 148 TFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEM 207

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM---KSSEN-----------CQ---- 259
              G+   +  +N L+      G+  E+  +   +     S N           CQ    
Sbjct: 208 LGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAML 267

Query: 260 ---------------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
                          PD  T++++I       KV EAE    +M+  G+EP+ F   S+I
Sbjct: 268 NEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSII 327

Query: 305 QCY---GKAQRTDDVVR--ALNRLPELGITPDDRFCGCLLNVMTQ 344
             Y   G  Q  D ++R  A       G  PD+     L+N + Q
Sbjct: 328 DGYCKLGMMQNADQILRDGAFK-----GFVPDESTYCSLINGLCQ 367



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 3/227 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+++ A  +++ A  +  + +    +TL+K     G     L +  EM   G  P++ TY
Sbjct: 369 GDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTY 428

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++ + +         +  +    G  P+  T+ +L+  Y +    ++ + +   M  
Sbjct: 429 NLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWN 488

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKV 278
            G+   V  YN++L      G  ++    F+ M   + C P+  T++ +  + C  R KV
Sbjct: 489 HGVSPDVITYNSILNGLCKAGKYEDVMGTFKLM-MEKGCVPNIITYNILTESFCKAR-KV 546

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
            EA  +  EM   G  P++    +L++ +      D   +   R+ E
Sbjct: 547 EEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDE 593



 Score = 42.7 bits (99), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNM 156
           +A  VE A  L +  +N+    D   F TL+K +   G+ DG   +++ + +       +
Sbjct: 542 KARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTI 601

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TYN +++           + ++ +M +NG SP+  TY  ++  + +        S    
Sbjct: 602 ATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLV 661

Query: 217 MKEKGMQLSVTLYNTLL 233
             EKG+  S+T +  +L
Sbjct: 662 KIEKGLIPSLTTFGRVL 678


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 151/328 (46%), Gaps = 28/328 (8%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +A + LIK +G  G  +  L V+ +MK  G++P + TYN L++ +  A      + +++ 
Sbjct: 170 SAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEV 229

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M    + P+  TY ++++ Y +A   +  +   R+M+ +G +     Y T++  C    Y
Sbjct: 230 MESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC----Y 285

Query: 242 TDEAF----EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
            D  F     ++++M   +  Q     FS +I      GK++E   +F  M+  G +PN+
Sbjct: 286 ADSDFGSCVALYQEM-DEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNV 344

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
            + T LI  Y K+   +D +R L+R+ + G  PD      ++N + +      G++ E +
Sbjct: 345 AIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN-----GRVEEAL 399

Query: 358 EKSNSKL--GYVVKLLLEEQDIEGDFK----KEATELFNSISKD--VKKAYC-NCLIDLC 408
           +  ++    G  +  +     I+G  K     EA  LF  +S+    + +YC N LID  
Sbjct: 400 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 459

Query: 409 VNLNLLENACKLL-----ELGLTLEVYT 431
                ++ A  L      E G    VYT
Sbjct: 460 TKHRKVDEAIALFKRMEEEEGCDQTVYT 487



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 2/225 (0%)

Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
            LY     +  ++ P+AFS +I      G  +    V+E M   G KPN+  Y  L+D  
Sbjct: 295 ALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGY 354

Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
            ++        +   M D G  P+  TY+ ++    +    E+ L  +   +  G+ ++ 
Sbjct: 355 AKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINS 414

Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
             Y++L+      G  DEA  +FE+M S + C  DS+ ++++I   +   KV EA A+F 
Sbjct: 415 MFYSSLIDGLGKAGRVDEAERLFEEM-SEKGCTRDSYCYNALIDAFTKHRKVDEAIALFK 473

Query: 287 EM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            M  E G +  ++  T L+    K  R ++ ++  + + + GITP
Sbjct: 474 RMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITP 518



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 3/235 (1%)

Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
           E  RI P+   ++T+IK Y  AG     +    +M+  G + + ITY  ++         
Sbjct: 231 ESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDF 290

Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
                +Y+EM + G+    + ++ ++    +     +  +V+  M  KG + +V +Y  L
Sbjct: 291 GSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVL 350

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
           +   A  G  ++A  +   M   E  +PD  T+S ++      G+V EA   F+     G
Sbjct: 351 IDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG 409

Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
              N    +SLI   GKA R D+  R    + E G T D      L++  T+  K
Sbjct: 410 LAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRK 464



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 104/229 (45%), Gaps = 3/229 (1%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   ++ LI  Y  +G+ +  + +   M   G KP+++TY+ +++ + +  R  +    
Sbjct: 342 PNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 401

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +     +GL+ N   Y+SL+   G+A   ++   ++ EM EKG       YN L+     
Sbjct: 402 FHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 461

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               DEA  +F+ M+  E C    +T++ +++      +  EA  +++ M++ G  P   
Sbjct: 462 HRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAA 521

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
              +L      + +     + L+ L  +G+  D   C  ++N + +  +
Sbjct: 522 CFRALSTGLCLSGKVARACKILDELAPMGVILDAA-CEDMINTLCKAGR 569


>gi|410110101|gb|AFV61130.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           viburnoides]
          Length = 337

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 113/218 (51%), Gaps = 7/218 (3%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 120 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 179

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G ++   L+ T++
Sbjct: 180 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMI 239

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G    A  +  ++K     +PD+    + I I +  G++ EA  +F + ++AG 
Sbjct: 240 VAYERAGLVAHAKRLLHELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGE 294

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             ++ V   +I    K ++  +VV   +++  LG  PD
Sbjct: 295 VKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 332



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 118/263 (44%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++ +I ++G A  F    ++  EMKA GV PN  +Y+ LL 
Sbjct: 6   AISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLT 65

Query: 165 TMGRAKRPWQVKTIYKEMTD-----------------------------------NGLSP 189
                K+  +  +++ EM +                                    G+ P
Sbjct: 66  MYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 125

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 126 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 185

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+ S   +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 186 QEMQ-SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYER 244

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 245 AGLVAHAKRLLHELKRPDNIPRD 267



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 96/196 (48%), Gaps = 1/196 (0%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           ++   ++++  +K  G  P+++ YN +++  G+AK   + +++  EM   G+ PN  +Y+
Sbjct: 2   DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYS 61

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +LL  Y   +   + LSV+ EM+E    L +T  N ++ +   +G   EA ++F  M+  
Sbjct: 62  TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 121

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
              +P+  ++++++ +        EA  +F  M     E N+    S++  YGK    + 
Sbjct: 122 -GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 180

Query: 316 VVRALNRLPELGITPD 331
               +  +   GI P+
Sbjct: 181 ANNLIQEMQSRGIEPN 196


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 6/254 (2%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L  +      + D   F+++I  +  +GN    + ++ +MK  G KP   T+N L+   G
Sbjct: 70  LISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYG 129

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
            A +  +   + + + D G+ PN  TY  L+RA+      E+  ++  +M   GMQ    
Sbjct: 130 NAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAV 189

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YNTL    A+ G T  A E+  +M  +    P+  T S ++      G + +A      
Sbjct: 190 TYNTLARAYAEKGETIRAEEMILEM-LNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFR 248

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           M E G  PNLFV  SLI+ +     T+ V   L  + E G+ PD      ++N  +    
Sbjct: 249 MKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSA-- 306

Query: 348 EELGKLVECVEKSN 361
              G++ +C E  N
Sbjct: 307 ---GRMDKCKEIFN 317



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 129/280 (46%), Gaps = 38/280 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           + +GN++ A  L+ + +    +   + F+TLIK YG AG  +  L + E ++  GVKPN 
Sbjct: 94  SESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQ 153

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG-------------- 202
            TYN L+      +   +   +  +M  +G+ P+  TY +L RAY               
Sbjct: 154 RTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILE 213

Query: 203 ----RARYGEDTLS------------------VYREMKEKGMQLSVTLYNTLLAMCADVG 240
               R    E T S                  V+R MKE G+  ++ ++N+L+    D  
Sbjct: 214 MLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFR-MKELGVLPNLFVFNSLIKGFLDTM 272

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
            T+   E+   M+ +   +PD  TFS+++   S  G++ + + +FN+M++A  EP++   
Sbjct: 273 DTEGVDEVLTLMEEN-GVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAF 331

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           + L + Y +A   +     L  + + G+ P+   C  +++
Sbjct: 332 SILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVIS 371



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G KP +ITY  L+  + R K    +  +  ++ +NG+ P+   + S++ A+  +   ++ 
Sbjct: 43  GHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEA 102

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + ++R+MKE G + + + +NTL+    + G T+EA ++ E ++     +P+  T++ ++ 
Sbjct: 103 MKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDG-GVKPNQRTYNILVR 161

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDD-VVRALNRLPEL 326
               +  + EA  M  +M+ +G +P+     +L + Y   G+  R ++ ++  LNR    
Sbjct: 162 AWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRR--- 218

Query: 327 GITPDDRFCGCLLN 340
            +TP++R C  ++N
Sbjct: 219 -VTPNERTCSIIVN 231



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 112/227 (49%), Gaps = 1/227 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  +++   +E  +     ++TL+        F   L +  +++  G+KP+ I +N++++
Sbjct: 32  AHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIIN 91

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
               +    +   ++++M ++G  P  +T+ +L++ YG A   E+ L +   +++ G++ 
Sbjct: 92  AFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKP 151

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   YN L+    +    +EA+ +   M +S   QPD+ T++++    + +G+   AE M
Sbjct: 152 NQRTYNILVRAWCNKENMEEAWNMVYKMVAS-GMQPDAVTYNTLARAYAEKGETIRAEEM 210

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             EML     PN    + ++  Y K     D  R + R+ ELG+ P+
Sbjct: 211 ILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPN 257



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 19/250 (7%)

Query: 87  ASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVY 144
           A    EK    RA   EM   + +R      R+ PN    S ++  Y   GN        
Sbjct: 195 ARAYAEKGETIRAE--EMILEMLNR------RVTPNERTCSIIVNGYCKEGNMVDASRFV 246

Query: 145 EEMKAIGVKPNMITYNNL----LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
             MK +GV PN+  +N+L    LDTM        V  +   M +NG+ P+  T+++++ A
Sbjct: 247 FRMKELGVLPNLFVFNSLIKGFLDTMDTE----GVDEVLTLMEENGVRPDVVTFSTIMNA 302

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           +  A   +    ++ +M +  ++  +  ++ L       G  ++A  I   M+      P
Sbjct: 303 WSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKY-GVHP 361

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           +    +++I+     GK+  A  ++ +M E G  PNL    +LI  YG+A++       L
Sbjct: 362 NVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELL 421

Query: 321 NRLPELGITP 330
             + E G+ P
Sbjct: 422 QVMEEKGVFP 431



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 7/111 (6%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
            RAG  E A  +    R  K+ + PN    +T+I  + +AG  +  + VYE+M  IGV P
Sbjct: 339 VRAGEPEKAESILTSMR--KYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSP 396

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT---YASLLRAYG 202
           N+ TY  L+   G AK+P + + + + M + G+ P   T    A   RA G
Sbjct: 397 NLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGTMQLIADAWRAIG 447



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/80 (21%), Positives = 44/80 (55%)

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           + ++ +   +GK  EA ++FN +++ G +P L   T+L+    + +    ++R ++++ E
Sbjct: 17  TKLMNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEE 76

Query: 326 LGITPDDRFCGCLLNVMTQT 345
            G+ PD      ++N  +++
Sbjct: 77  NGMKPDSILFNSIINAFSES 96


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 118/244 (48%), Gaps = 2/244 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  LYD A ++ +  D   + TLI      G     + +  +M+  GV+PN+I YN ++D
Sbjct: 145 ALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVD 204

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQ 223
            + +     +   +  EM   G+  +  TY SL+  +  A   +  + +  EM  K  ++
Sbjct: 205 GLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVR 264

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
             V  +N L+     +G   EA  +F  M      +PD  + ++++     RG +SEA+ 
Sbjct: 265 PDVYTFNILVDALCKLGMVAEARNVFGLM-IKRGLEPDVVSCNALMNGWCLRGCMSEAKE 323

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           +F+ M+E G  PN+   ++LI  Y K +  D+ +R L  + +  + PD     CLL+ ++
Sbjct: 324 VFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLS 383

Query: 344 QTPK 347
           ++ +
Sbjct: 384 KSGR 387



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 2/237 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNM 156
           + G V  A GL      +   ID   +++LI  +  AG F G + +  EM     V+P++
Sbjct: 208 KEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDV 267

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T+N L+D + +     + + ++  M   GL P+  +  +L+  +       +   V+  
Sbjct: 268 YTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDR 327

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E+G   +V  Y+TL+     V   DEA  +  +M    N  PD+ T++ ++   S  G
Sbjct: 328 MVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQ-RNLVPDTVTYNCLLDGLSKSG 386

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           +V     +   M  +G  P+L     L+  Y K +  D  +     + + GI+P+ R
Sbjct: 387 RVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIR 443



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 1/198 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++DR        +  ++STLI  Y      D  L +  EM    + P+ +TYN LLD + 
Sbjct: 324 VFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLS 383

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           ++ R      + + M  +G +P+  TY  LL  Y +    +  L++++ + + G+  ++ 
Sbjct: 384 KSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIR 443

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YN L+      G    A EIF+ + S + C+P+  T++ MI      G + EAEA+  E
Sbjct: 444 TYNILIDGLCKGGRMKAAKEIFQ-LLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLE 502

Query: 288 MLEAGFEPNLFVLTSLIQ 305
           M++ GF PN      L++
Sbjct: 503 MVDDGFPPNAVTFDPLVR 520



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 2/243 (0%)

Query: 99  AGNVEMAFGLYDR-ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           AG  + A  L +     E  R D   F+ L+      G      NV+  M   G++P+++
Sbjct: 244 AGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVV 303

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           + N L++         + K ++  M + G  PN  +Y++L+  Y + +  ++ L +  EM
Sbjct: 304 SCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEM 363

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++ +      YN LL   +  G     +++ E M++S    PD  T++ ++     R  
Sbjct: 364 HQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQ-APDLITYNVLLDDYLKREC 422

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + +A A+F  +++ G  PN+     LI    K  R          L   G  P+ R    
Sbjct: 423 LDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNI 482

Query: 338 LLN 340
           ++N
Sbjct: 483 MIN 485



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 49/107 (45%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           +++G V   + L +  R      D   ++ L+  Y      D  L +++ +   G+ PN+
Sbjct: 383 SKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNI 442

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
            TYN L+D + +  R    K I++ ++  G  PN  TY  ++    R
Sbjct: 443 RTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRR 489



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN   ++ LI      G       +++ +   G +PN+ TYN +++ + R     + +
Sbjct: 438 ISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAE 497

Query: 177 TIYKEMTDNGLSPNWNTYASLLRA 200
            +  EM D+G  PN  T+  L+RA
Sbjct: 498 ALLLEMVDDGFPPNAVTFDPLVRA 521


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 2/223 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + FS  ++ +  A      + ++E MK    K  + T N+LLD++GRAK   + + +++ 
Sbjct: 164 DTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFEN 223

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           +     +PN  TY  LL  + + +   +  SV+ EM +KG +  +  +N +L        
Sbjct: 224 LKGR-FTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQ 282

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
             +A ++F  MK ++   PD  +++ +I     + K+ EA   F EM+++G +P+  V T
Sbjct: 283 RSDAIKLFMVMK-AKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYT 341

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
            LI  +G  +R D V   L  + E G  PD      L+ +MT+
Sbjct: 342 CLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTR 384



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 109/250 (43%), Gaps = 2/250 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  +++  +   +++     + L+   G A        ++E +K     PN+ TY  LL+
Sbjct: 182 AVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKG-RFTPNLRTYTVLLN 240

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              + K   +  +++ EM D G  P+   +  +L    R++   D + ++  MK KG   
Sbjct: 241 GWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSP 300

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
            V  Y  L+         +EA E F++M  S  C+PD+  ++ +IT    R ++     +
Sbjct: 301 DVRSYTILIRYLCRQSKMEEAVEYFQEMIDS-GCKPDAAVYTCLITGFGNRKRMDMVYDL 359

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
             EM E G  P+     +LI+   + +  DD  R   ++ + GI P       ++    Q
Sbjct: 360 LKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQ 419

Query: 345 TPKEELGKLV 354
           T   E+G+ V
Sbjct: 420 TRNYEMGRAV 429



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 114 NEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
           N K R  PN   ++ L+  +    N     +V+ EM   G KP+++ +N +L+ + R+K+
Sbjct: 223 NLKGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQ 282

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
                 ++  M   G SP+  +Y  L+R   R    E+ +  ++EM + G +    +Y  
Sbjct: 283 RSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTC 342

Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
           L+    +    D  +++ ++MK  E C PD  T++++I + +      +A  ++ +M ++
Sbjct: 343 LITGFGNRKRMDMVYDLLKEMKE-EGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQS 401

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDD 332
           G EP +     +++ Y +  R  ++ RA+ + +   G  PDD
Sbjct: 402 GIEPTIHTYNMIMKSYFQT-RNYEMGRAVWDEMSRKGFCPDD 442



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  R   +E A   +    +   + D   ++ LI  +G     D   ++ +EMK  G  P
Sbjct: 311 YLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPP 370

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           + +TYN L+  M R K P     IYK+MT +G+ P  +TY  ++++Y + R  E   +V+
Sbjct: 371 DGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVW 430

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
            EM  KG       Y  L+      G + EA +  E+M
Sbjct: 431 DEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEEM 468



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 2/179 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++ LI+        +  +  ++EM   G KP+   Y  L+   G  KR   V  + 
Sbjct: 301 DVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLL 360

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KEM + G  P+  TY +L++   R +  +D   +Y++M + G++ ++  YN ++      
Sbjct: 361 KEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQT 420

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNL 297
              +    ++++M     C PD  +++ +I     +G+  EA     EMLE G + P L
Sbjct: 421 RNYEMGRAVWDEMSRKGFC-PDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKAPQL 478



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 1/188 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           + ++  MKA G  P++ +Y  L+  + R  +  +    ++EM D+G  P+   Y  L+  
Sbjct: 287 IKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITG 346

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           +G  +  +    + +EMKE+G       YN L+ +   +   D+A  I++ M  S   +P
Sbjct: 347 FGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQS-GIEP 405

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
              T++ ++             A+++EM   GF P+    T LI       R+ +  + L
Sbjct: 406 TIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYL 465

Query: 321 NRLPELGI 328
             + E G+
Sbjct: 466 EEMLEKGM 473



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 54/277 (19%), Positives = 110/277 (39%), Gaps = 48/277 (17%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM----------------------- 222
           G   +  TY S++    + R  E  +S+  EM  KG+                       
Sbjct: 124 GFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERKKAV 183

Query: 223 -----------QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
                      ++ V   N LL          EA  +FE++K      P+  T++ ++  
Sbjct: 184 AMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKG--RFTPNLRTYTVLLNG 241

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                 + EA +++NEM++ GF+P++     +++   ++++  D ++    +   G +PD
Sbjct: 242 WCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPD 301

Query: 332 DRFCGCLLNVM-TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390
            R    L+  +  Q+  EE  +  + +  S  K    V   L    I G   ++  ++  
Sbjct: 302 VRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCL----ITGFGNRKRMDMVY 357

Query: 391 SISKDVKKAYC-------NCLIDLCVNLNLLENACKL 420
            + K++K+  C       N LI L   L + ++A ++
Sbjct: 358 DLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARI 394


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 2/265 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  VE A       +   +R    +++T+I+ Y     F     +  EM+A G  PN I
Sbjct: 300 KANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSI 359

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR-E 216
           TY  ++ ++   K   +   +   M  +G  P+   Y  L+    RA   E+   V+R E
Sbjct: 360 TYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVE 419

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M E G+ ++ + YN+++AM       D+A E+ ++M+SS  C PD  T+  ++  C  RG
Sbjct: 420 MPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRG 479

Query: 277 KVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
            V E   +  EM+ +     +    T LIQ   +A   +        +    ITP  R C
Sbjct: 480 DVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTC 539

Query: 336 GCLLNVMTQTPKEELGKLVECVEKS 360
             LL  + +    E  + +E + K+
Sbjct: 540 LLLLEEVKKKNMHESAERIEHIMKT 564



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 38/243 (15%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G K +   Y+  +D +G+AK+  ++K   + M  + L    NT A ++R +  A   E+ 
Sbjct: 180 GHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLV-TLNTVAKIMRRFAGAGEWEEA 238

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + ++  + E G++ +    N LL         ++A  +   +KS  +  P++ TF+  I 
Sbjct: 239 VGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKS--HITPNAHTFNIFIH 296

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK--------------------- 309
                 +V EA     EM   GF P +   T++I+CY +                     
Sbjct: 297 GWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPP 356

Query: 310 -------------AQRT-DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 355
                        AQ+  ++ +R   R+   G  PD  F  CL++ + +  + E  + V 
Sbjct: 357 NSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF 416

Query: 356 CVE 358
            VE
Sbjct: 417 RVE 419


>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 426

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 121/266 (45%), Gaps = 30/266 (11%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++   R  K  +D    + +I +YG  G       ++  M+ +G++PN+++YN LL 
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 192

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G A+   +   +++ M    +  N  TY S++  YG+    E   ++ +EM+ +G++ 
Sbjct: 193 VYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEP 252

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----------------------------- 255
           +   Y+T++++   VG  D A  +F+ ++SS                             
Sbjct: 253 NSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLL 312

Query: 256 -ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
            E  +PD+      I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++  
Sbjct: 313 HELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIXVFERMIHLFSKYKKYG 372

Query: 315 DVVRALNRLPELGITPDDRFCGCLLN 340
           +VV   +++  LG  PD      +LN
Sbjct: 373 NVVEVFDKMRGLGYFPDSNVIALILN 398



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   R   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENRKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 RKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 109/249 (43%), Gaps = 32/249 (12%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPD---------------SWTFSS----------- 267
                 G    A  +  ++K  +N   D               +W F             
Sbjct: 297 VAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIX 356

Query: 268 ----MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
               MI + S   K      +F++M   G+ P+  V+  ++  YGK    D        +
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416

Query: 324 PELGITPDD 332
            E+G    D
Sbjct: 417 QEVGCVFSD 425



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 38.5 bits (88), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 10/160 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +           + +  Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                 I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++ +
Sbjct: 321 IPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIXVFERMIHLFSKYKKYGNVVEVFDK 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 381 MRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVG 420


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 1/245 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR  +      L  +      + D   F+ +I     +GN D  + ++E+MK  G KP  
Sbjct: 388 TRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTA 447

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            T+N L+   G+  +  +   +   M  D  L PN  T   L++A+   R  E+  ++  
Sbjct: 448 STFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVY 507

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M+  G++  V  +NTL    A +G T  A ++          +P+  T  +++      
Sbjct: 508 KMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE 567

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           GK+ EA   F  M E G  PNLFV  SLI+ +      D V   ++ + E G+ PD    
Sbjct: 568 GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTF 627

Query: 336 GCLLN 340
             L+N
Sbjct: 628 STLMN 632



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 38/272 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG----------------- 139
           + +GN++ A  ++++ +    +   + F+TLIK YG  G  +                  
Sbjct: 423 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPN 482

Query: 140 -------------------CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIY 179
                                N+  +M++ GVKP+++T+N L     R       +  I 
Sbjct: 483 DRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMII 542

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  N + PN  T  +++  Y      E+ L  +  MKE G+  ++ ++N+L+    ++
Sbjct: 543 PRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNI 602

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              D   E+  D+      +PD  TFS+++   S  G +   E ++ +MLE G +P++  
Sbjct: 603 NDMDGVGEVV-DLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHA 661

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + L + Y +A   +   + LN++ + G+ P+
Sbjct: 662 FSILAKGYARAGEPEKAEQILNQMRKFGVRPN 693



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 90/171 (52%), Gaps = 2/171 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L++ +    RP +  +I+  + + G  P+  TY +L+ A  R ++    LS+  ++++ G
Sbjct: 348 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 407

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++    L+N ++   ++ G  D+A +IFE MK S  C+P + TF+++I      GK+ E+
Sbjct: 408 LKPDTILFNAIINASSESGNLDQAMKIFEKMKES-GCKPTASTFNTLIKGYGKIGKLEES 466

Query: 282 EAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + + ML +   +PN      L+Q +   ++ ++    + ++   G+ PD
Sbjct: 467 SRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPD 517



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 100/202 (49%), Gaps = 5/202 (2%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G KP++ITY  L+  + R K    + ++  ++  NGL P+   + +++ A   +   +  
Sbjct: 372 GHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 431

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + ++ +MKE G + + + +NTL+     +G  +E+  + + M   E  QP+  T + ++ 
Sbjct: 432 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQ 491

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELG 327
               + K+ EA  +  +M   G +P++    +L + Y +   T   +D++  + R+    
Sbjct: 492 AWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNK 549

Query: 328 ITPDDRFCGCLLNVMTQTPKEE 349
           + P+ R CG ++N   +  K E
Sbjct: 550 VKPNVRTCGTIVNGYCEEGKME 571



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 88/172 (51%), Gaps = 4/172 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G +E A   + R +  +  + PN   F++LIK +    + DG   V + M+  GVKP+++
Sbjct: 568 GKMEEALRFFYRMK--ELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 625

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T++ L++         + + IY +M + G+ P+ + ++ L + Y RA   E    +  +M
Sbjct: 626 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 685

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           ++ G++ +V +Y  +++     G   +A ++++ M       P+  T+ ++I
Sbjct: 686 RKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLI 737



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPW 173
           IDP+  AFS L K Y  AG  +    +  +M+  GV+PN++ Y  ++    + G  K+  
Sbjct: 655 IDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 714

Query: 174 QVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           QV   YK+M    GLSPN  TY +L+  +G A+       + ++M+ K +
Sbjct: 715 QV---YKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNV 761



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVK 153
            RAG  E A  + ++ R  K+ + PN   ++ +I  + +AG     + VY++M  I G+ 
Sbjct: 670 ARAGEPEKAEQILNQMR--KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLS 727

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
           PN+ TY  L+   G AK+PW+ + + K+M    + P   T
Sbjct: 728 PNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKT 767



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           RG+  EA ++FN ++E G +P+L   T+L+    + +    ++  ++++ + G+ PD   
Sbjct: 355 RGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTIL 414

Query: 335 CGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
              ++N  +++   ++  K+ E +++S  K
Sbjct: 415 FNAIINASSESGNLDQAMKIFEKMKESGCK 444


>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 116/228 (50%), Gaps = 5/228 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           F++L+    T  + + CL     M+A  +KP++ITY  L++   +A+R  +   +++EM 
Sbjct: 251 FNSLMAFQKTVADAEACLR---HMQAAKIKPDVITYTGLINAYSKARRVEEAHVVFREMV 307

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +GL P+   Y +LL AY + +  E   S+++ M +   +  +  Y TLLA  A+ G   
Sbjct: 308 ASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMK 367

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  + + MK +   +P+  T+ +++   +    ++     F ++ +AG +PN  + T L
Sbjct: 368 KAERLLKRMKQA-GLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNSTIFTLL 426

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV-MTQTPKEEL 350
           ++ +G+ +  +  +    ++ + G   D R    L++   T   K+E+
Sbjct: 427 VRTFGQQEDFESALSWFKKMLDSGCPADQRSRAALMDACQTSEQKQEV 474



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 40/265 (15%)

Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           W    + F+ +I  YG  G        + EM+ +G++PN+  + +LL+   R     + +
Sbjct: 103 WNFGIHDFNLMIAAYGKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAE 162

Query: 177 TIYKEMTDNGLSPNWNTYAS------------------------------------LLRA 200
           +IY+EM   G +P   TY                                      +L  
Sbjct: 163 SIYQEMLKTGPAPTEVTYQVYINALCKAERFNDAERIFKCLDESAEAKPDARLYNLMLHT 222

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           YG+A    +  +++R+MK  G+ ++V  +N+L+A    V    +A      M++++  +P
Sbjct: 223 YGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMAFQKTVA---DAEACLRHMQAAK-IKP 278

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           D  T++ +I   S   +V EA  +F EM+ +G  P+     +L+  Y K +  +      
Sbjct: 279 DVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLF 338

Query: 321 NRLPELGITPDDRFCGCLLNVMTQT 345
             + +    PD R    LL     T
Sbjct: 339 KSMGQDRCRPDIRSYTTLLAAYANT 363



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 3/209 (1%)

Query: 118 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           +I P+   ++ LI  Y  A   +    V+ EM A G++P+ I YN LLD   + K     
Sbjct: 275 KIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGA 334

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           ++++K M  +   P+  +Y +LL AY      +    + + MK+ G++ +V  Y TL+  
Sbjct: 335 ESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQG 394

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              V   +   + FED++ +   +P+S  F+ ++     +     A + F +ML++G   
Sbjct: 395 YTSVHDINAMLQTFEDLQKA-GIKPNSTIFTLLVRTFGQQEDFESALSWFKKMLDSGCPA 453

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           +     +L+     +++  +V+     LP
Sbjct: 454 DQRSRAALMDACQTSEQKQEVLEYFGSLP 482



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 80/192 (41%), Gaps = 1/192 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++A  VE A  ++        R    A++TL+  Y      +G  ++++ M     +P++
Sbjct: 291 SKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDI 350

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            +Y  LL          + + + K M   GL PN  TY +L++ Y         L  + +
Sbjct: 351 RSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFED 410

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +++ G++ + T++  L+         + A   F+ M  S  C  D  + ++++  C    
Sbjct: 411 LQKAGIKPNSTIFTLLVRTFGQQEDFESALSWFKKMLDS-GCPADQRSRAALMDACQTSE 469

Query: 277 KVSEAEAMFNEM 288
           +  E    F  +
Sbjct: 470 QKQEVLEYFGSL 481


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 107/217 (49%), Gaps = 3/217 (1%)

Query: 117 WRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           +++ P+   ++ L+K     G  D  L ++ ++   G  P+ I Y  L+D   + + P  
Sbjct: 514 YKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPAT 573

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
              I+K M  NG+ P+   Y  L+  + R    E+ L + RE+ + G++  +  YNT++ 
Sbjct: 574 GLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMIC 633

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
               +    +A ++FE +K     QP++ TF+ +I      G++ +A  +F+ MLE G E
Sbjct: 634 GYCSLKIFSKAIKLFEVLKCGRT-QPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPE 692

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           PN+   + LI  Y K + T+       ++    ++P+
Sbjct: 693 PNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPN 729



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 136/311 (43%), Gaps = 45/311 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG +E    L+  A     ++D   FS+++  Y   G+    + VY  M   G+ PN++
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--------GRARYG-- 207
           TY+ L++ + R  R  +   ++ ++   GL P+  TY+SL+  +        G   YG  
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIM 441

Query: 208 -------------------------EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                                    ++ L  + +  ++G+ L+  L+N L+  C  +  T
Sbjct: 442 LRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRT 501

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +  +++  M   +   PD  T++ ++   + +G++ EA A+F ++L+ GF P+  +  +
Sbjct: 502 RDGLKMYILMGMYK-VIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCT 560

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 362
           LI  + K +     ++    +   GI PD     C+ NV+      E      CVE    
Sbjct: 561 LIDGFCKKRDPATGLQIFKLMQSNGIFPDI----CIYNVLINMFFRE-----GCVENVLE 611

Query: 363 KLGYVVKLLLE 373
            L  ++K  LE
Sbjct: 612 LLREIIKYGLE 622



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 105/213 (49%), Gaps = 7/213 (3%)

Query: 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
           G A +F      ++ M   G  PN++T++ L++   +  R  +  ++Y  M + G+ P+ 
Sbjct: 257 GVASDF------FDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDL 310

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
             Y+ L+    RA   E+  S++     +G+++ V ++++++     VG   +A E++  
Sbjct: 311 VIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTR 370

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M   E   P+  T+S +I      G+V EA  +F ++L+ G EP++   +SLI  + K++
Sbjct: 371 ML-KEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSE 429

Query: 312 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
              D       +   G  PD   C  L+N +++
Sbjct: 430 NLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSR 462



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 113/264 (42%), Gaps = 23/264 (8%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC---------LNVYEEM 147
           +R G ++ A   + +A      ++   F+ LI         DGC         L +Y  M
Sbjct: 461 SRQGMMDEALRFFFQAVKRGLTLNNYLFNALI---------DGCFRLKRTRDGLKMYILM 511

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
               V P+++TY  L+  +    R  +   ++ ++   G SP+   Y +L+  + + R  
Sbjct: 512 GMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDP 571

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
              L +++ M+  G+   + +YN L+ M    G  +   E+  ++      +PD  T+++
Sbjct: 572 ATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREI-IKYGLEPDIVTYNT 630

Query: 268 MITICS-CRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           M  IC  C  K+        E+L+ G  +PN    T LI  Y K  R DD +   + + E
Sbjct: 631 M--ICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLE 688

Query: 326 LGITPDDRFCGCLLNVMTQTPKEE 349
            G  P+     CL++   +T   E
Sbjct: 689 RGPEPNILTYSCLIDGYFKTENTE 712



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 3/228 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF LY+    +    D   +S LI     AG  +   +++    A GVK +++ +++++D
Sbjct: 294 AFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMD 353

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R     +   +Y  M   G+SPN  TY+ L+    R     +   V+ ++ ++G++ 
Sbjct: 354 AYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEP 413

Query: 225 SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           SV  Y++L+   C      D  F ++  M    +  PD    S +I   S +G + EA  
Sbjct: 414 SVLTYSSLIDGFCKSENLRD-GFGLYGIMLRKGHV-PDVVVCSMLINGLSRQGMMDEALR 471

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            F + ++ G   N ++  +LI    + +RT D ++    +    + PD
Sbjct: 472 FFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPD 519



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 3/183 (1%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K+ ++P+   ++T+I  Y +   F   + ++E +K    +PN IT+  L+D   +  R  
Sbjct: 618 KYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMD 677

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
               I+  M + G  PN  TY+ L+  Y +    E    +Y +M    +  ++  Y+ L+
Sbjct: 678 DAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILI 737

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G  +EA   F+      +  PD   +  +I      G+++EA  +++ ML  G 
Sbjct: 738 DGLCKKGLMEEASLAFQ-CAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGI 796

Query: 294 EPN 296
            P+
Sbjct: 797 MPD 799



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 15/220 (6%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           GN+E+    +   RN  +  +P+  +S L+  Y   G  D  ++ +  M  +GV  +   
Sbjct: 120 GNLEVLGEFHGSFRN--YGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYA 177

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            + +LD +  + R   +   Y+EM           Y  +  ++ +    E  L+ +R + 
Sbjct: 178 ASEMLDLLIDSDRIDVILENYEEMCK-----GLGVYEFVFNSFLKRGEVEKGLNFHRALV 232

Query: 219 EKGMQLSVTLYNTL---LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           E+G+   +   N +   L M   +G   + F    DM       P+  TFS++I +    
Sbjct: 233 ERGLVPKIVDCNKILKGLCMGNQIGVASDFF----DMMVRSGPSPNLVTFSTLINVYCKE 288

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
            ++ EA +++N M+E G  P+L + + LI    +A + ++
Sbjct: 289 LRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEE 328


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 107/217 (49%), Gaps = 3/217 (1%)

Query: 117 WRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           +++ P+   ++ L+K     G  D  L ++ ++   G  P+ I Y  L+D   + + P  
Sbjct: 514 YKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPAT 573

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
              I+K M  NG+ P+   Y  L+  + R    E+ L + RE+ + G++  +  YNT++ 
Sbjct: 574 GLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMIC 633

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
               +    +A ++FE +K     QP++ TF+ +I      G++ +A  +F+ MLE G E
Sbjct: 634 GYCSLKIFSKAIKLFEVLKCGRT-QPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPE 692

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           PN+   + LI  Y K + T+       ++    ++P+
Sbjct: 693 PNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPN 729



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 136/311 (43%), Gaps = 45/311 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG +E    L+  A     ++D   FS+++  Y   G+    + VY  M   G+ PN++
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--------GRARYG-- 207
           TY+ L++ + R  R  +   ++ ++   GL P+  TY+SL+  +        G   YG  
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIM 441

Query: 208 -------------------------EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                                    ++ L  + +  ++G+ L+  L+N L+  C  +  T
Sbjct: 442 LRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRT 501

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +  +++  M   +   PD  T++ ++   + +G++ EA A+F ++L+ GF P+  +  +
Sbjct: 502 RDGLKMYILMGMYK-VIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCT 560

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 362
           LI  + K +     ++    +   GI PD     C+ NV+      E      CVE    
Sbjct: 561 LIDGFCKKRDPATGLQIFKLMQSNGIFPDI----CIYNVLINMFFRE-----GCVENVLE 611

Query: 363 KLGYVVKLLLE 373
            L  ++K  LE
Sbjct: 612 LLREIIKYGLE 622



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 105/213 (49%), Gaps = 7/213 (3%)

Query: 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
           G A +F      ++ M   G  PN++T++ L++   +  R  +  ++Y  M + G+ P+ 
Sbjct: 257 GVASDF------FDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDL 310

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
             Y+ L+    RA   E+  S++     +G+++ V ++++++     VG   +A E++  
Sbjct: 311 VIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTR 370

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M   E   P+  T+S +I      G+V EA  +F ++L+ G EP++   +SLI  + K++
Sbjct: 371 ML-KEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSE 429

Query: 312 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
              D       +   G  PD   C  L+N +++
Sbjct: 430 NLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSR 462



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 113/264 (42%), Gaps = 23/264 (8%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGC---------LNVYEEM 147
           +R G ++ A   + +A      ++   F+ LI         DGC         L +Y  M
Sbjct: 461 SRQGMMDEALRFFFQAVKRGLTLNNYLFNALI---------DGCFRLKRTRDGLKMYILM 511

Query: 148 KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207
               V P+++TY  L+  +    R  +   ++ ++   G SP+   Y +L+  + + R  
Sbjct: 512 GMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDP 571

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
              L +++ M+  G+   + +YN L+ M    G  +   E+  ++      +PD  T+++
Sbjct: 572 ATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKY-GLEPDIVTYNT 630

Query: 268 MITICS-CRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           M  IC  C  K+        E+L+ G  +PN    T LI  Y K  R DD +   + + E
Sbjct: 631 M--ICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLE 688

Query: 326 LGITPDDRFCGCLLNVMTQTPKEE 349
            G  P+     CL++   +T   E
Sbjct: 689 RGPEPNILTYSCLIDGYFKTENTE 712



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 3/228 (1%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF LY+    +    D   +S LI     AG  +   +++    A GVK +++ +++++D
Sbjct: 294 AFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMD 353

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              R     +   +Y  M   G+SPN  TY+ L+    R     +   V+ ++ ++G++ 
Sbjct: 354 AYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEP 413

Query: 225 SVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           SV  Y++L+   C      D  F ++  M    +  PD    S +I   S +G + EA  
Sbjct: 414 SVLTYSSLIDGFCKSENLRD-GFGLYGIMLRKGHV-PDVVVCSMLINGLSRQGMMDEALR 471

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            F + ++ G   N ++  +LI    + +RT D ++    +    + PD
Sbjct: 472 FFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPD 519



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 3/183 (1%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K+ ++P+   ++T+I  Y +   F   + ++E +K    +PN IT+  L+D   +  R  
Sbjct: 618 KYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMD 677

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
               I+  M + G  PN  TY+ L+  Y +    E    +Y +M    +  ++  Y+ L+
Sbjct: 678 DAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILI 737

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G  +EA   F+      +  PD   +  +I      G+++EA  +++ ML  G 
Sbjct: 738 DGLCKKGLMEEASLAFQ-CAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGI 796

Query: 294 EPN 296
            P+
Sbjct: 797 MPD 799



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 15/220 (6%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           GN+E+    +   RN  +  +P+  +S L+  Y   G  D  ++ +  M  +GV  +   
Sbjct: 120 GNLEVLGEFHGSFRN--YGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYA 177

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
            + +LD +  + R   +   Y+EM   GL      Y  +  ++ +    E  L+ +R + 
Sbjct: 178 ASEMLDLLIDSDRIDVILENYEEMC-KGLG----VYEFVFNSFLKRGEVEKGLNFHRALV 232

Query: 219 EKGMQLSVTLYNTL---LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           E+G+   +   N +   L M   +G   + F    DM       P+  TFS++I +    
Sbjct: 233 ERGLVPKIVDCNKILKGLCMGNQIGVASDFF----DMMVRSGPSPNLVTFSTLINVYCKE 288

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
            ++ EA +++N M+E G  P+L + + LI    +A + ++
Sbjct: 289 LRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEE 328


>gi|156070779|gb|ABU45192.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 406

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 12/281 (4%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM- 182
            S++I+ YG AG FD  L +Y++M  +G   + I++N LL      K+  +V+ ++ EM 
Sbjct: 103 LSSIIRSYGIAGMFDHALKIYDQMDDLGTPRSAISFNVLLSACVNTKQYDRVRQLFDEMP 162

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G  P+  +Y  L+R+Y      E  +   +EM+EKG++++   + TLL      G  
Sbjct: 163 VKYGFLPDKVSYGILIRSYCEMGLPEKAMERLKEMEEKGVEITAITFTTLLHAFYKKGMG 222

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA-EAMFNEMLEAGFEPNLFVLT 301
           DEA +++ +M  ++ C PD   ++  + I + +G   E  +A+  EM  AG +P+     
Sbjct: 223 DEAEKVWNEM-VNKGCGPDVGAYN--VKIRNIQGGDPEGVKALIEEMNNAGLKPDTISYN 279

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--ECVEK 359
            L+ CY +    D+  +    L   G  P+      L+  + +  + E G  V  E V  
Sbjct: 280 YLMTCYCENGLMDEAQKVYEDLETNGCNPNAATFRSLILYLCKKGRFETGYKVFKESVRV 339

Query: 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAY 400
           +       +K L     +EG  K+E  +    +S+ VKK +
Sbjct: 340 NKMPDFNTLKCL-----VEGLVKREKLKDAKGMSRTVKKKF 375



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 10/215 (4%)

Query: 109 YDRARN------EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           YDR R        K+   P+  ++  LI+ Y   G  +  +   +EM+  GV+   IT+ 
Sbjct: 151 YDRVRQLFDEMPVKYGFLPDKVSYGILIRSYCEMGLPEKAMERLKEMEEKGVEITAITFT 210

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            LL    +     + + ++ EM + G  P+   Y   +R   +    E   ++  EM   
Sbjct: 211 TLLHAFYKKGMGDEAEKVWNEMVNKGCGPDVGAYNVKIRNI-QGGDPEGVKALIEEMNNA 269

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G++     YN L+    + G  DEA +++ED++++  C P++ TF S+I     +G+   
Sbjct: 270 GLKPDTISYNYLMTCYCENGLMDEAQKVYEDLETN-GCNPNAATFRSLILYLCKKGRFET 328

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
              +F E +     P+   L  L++   K ++  D
Sbjct: 329 GYKVFKESVRVNKMPDFNTLKCLVEGLVKREKLKD 363



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 57/136 (41%)

Query: 85  PRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVY 144
           P       K  + + G+ E    L +   N   + D  +++ L+  Y   G  D    VY
Sbjct: 239 PDVGAYNVKIRNIQGGDPEGVKALIEEMNNAGLKPDTISYNYLMTCYCENGLMDEAQKVY 298

Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
           E+++  G  PN  T+ +L+  + +  R      ++KE       P++NT   L+    + 
Sbjct: 299 EDLETNGCNPNAATFRSLILYLCKKGRFETGYKVFKESVRVNKMPDFNTLKCLVEGLVKR 358

Query: 205 RYGEDTLSVYREMKEK 220
              +D   + R +K+K
Sbjct: 359 EKLKDAKGMSRTVKKK 374


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 110/216 (50%), Gaps = 3/216 (1%)

Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R  P+  A S+L++     G  +  LN+ + +   GV PN+  YN L+D++ + ++  + 
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEA 386

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + ++  M   GL PN  TY+ L+  + R    +  LS   EM + G++LSV  YN+L+  
Sbjct: 387 ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLING 446

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
               G    A     +M  ++  +P   T++S++     +GK+++A  +++EM   G  P
Sbjct: 447 HCKFGDISAAEGFMAEM-INKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAP 505

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +++  T+L+    +A    D V+  N + E  + P+
Sbjct: 506 SIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPN 541



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 3/256 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++  A G      N+K       +++L+  Y + G  +  L +Y EM   G+ P++ 
Sbjct: 449 KFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIY 508

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+  LL  + RA        ++ EM +  + PN  TY  ++  Y             +EM
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            EKG+      Y  L+      G   EA ++F D     NC+ +   ++ ++      GK
Sbjct: 569 TEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGK 627

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EA ++  EM++ G + +L     LI    K +        L  + + G+ PDD     
Sbjct: 628 LEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTS 687

Query: 338 LLNVMTQTP--KEELG 351
           +++  ++T   KE  G
Sbjct: 688 MIDAKSKTGDFKEAFG 703



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 9/251 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG +  A  L++     +W + PN   ++ +I+ Y   G+        +EM   G+ P+
Sbjct: 519 RAGLIRDAVKLFNEM--AEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPD 576

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
             +Y  L+  +    +  + K     +       N   Y  LL  + R    E+ LSV +
Sbjct: 577 TYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQ 636

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEA--FEIFEDMKSSENCQPDSWTFSSMITICS 273
           EM ++G+ L +  Y  L+     + + D    F + ++M      +PD   ++SMI   S
Sbjct: 637 EMVQRGVDLDLVCYGVLID--GSLKHKDRKLFFGLLKEMH-DRGLKPDDVIYTSMIDAKS 693

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G   EA  +++ M+  G  PN    T++I    KA   ++     +++  +   P+  
Sbjct: 694 KTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQV 753

Query: 334 FCGCLLNVMTQ 344
             GC L+++T+
Sbjct: 754 TYGCFLDILTK 764



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 105/228 (46%), Gaps = 12/228 (5%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           +F   + ++ +M ++G++P++  Y  ++ ++   K   + K +   M   G   N   Y 
Sbjct: 207 HFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYN 266

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
            L+    + +   + + + +++  K ++  V  Y TL+     V    + FEI  +M   
Sbjct: 267 VLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKV----QEFEIGLEMMDE 322

Query: 256 ENC---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
             C    P     SS++     RGK+ EA  +   +++ G  PNLFV  +LI    K ++
Sbjct: 323 MLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRK 382

Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVE 355
             +     +R+ ++G+ P+D     L+++  +  K +     LG++V+
Sbjct: 383 FHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVD 430



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 1/200 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G+ + AFG++D   NE    +   ++ +I     AG  +    +  +M+ +   PN 
Sbjct: 693 SKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQ 752

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TY   LD + + +   Q           GL  N  TY  L+R + R    E+   +   
Sbjct: 753 VTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITR 812

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M   G+      Y T++          +A E++  M + +  +PD   ++++I  C   G
Sbjct: 813 MIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSM-TEKGIRPDRVAYNTLIHGCCVAG 871

Query: 277 KVSEAEAMFNEMLEAGFEPN 296
           ++ +A  + NEML  G  PN
Sbjct: 872 EMGKATELRNEMLRQGLIPN 891



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 1/231 (0%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           ++ FGL     +   + D   ++++I      G+F     +++ M   G  PN +TY  +
Sbjct: 664 KLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAV 723

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           ++ + +A    + + +  +M      PN  TY   L    +                KG+
Sbjct: 724 INGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGL 783

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
             +   YN L+      G  +EA E+   M   +   PD  T+++MI     R  V +A 
Sbjct: 784 LANTATYNMLIRGFCRQGRIEEASELITRM-IGDGVSPDCITYTTMINELCRRNDVKKAI 842

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
            ++N M E G  P+     +LI     A          N +   G+ P+++
Sbjct: 843 ELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNK 893



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 1/226 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A G+      +  + D   + TL+        F+  L + +EM  +   P+    ++L++
Sbjct: 281 AVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVE 340

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            + +  +  +   + K + D G+SPN   Y +L+ +  + R   +   ++  M + G++ 
Sbjct: 341 GLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRP 400

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
           +   Y+ L+ M    G  D A     +M  +   +   + ++S+I      G +S AE  
Sbjct: 401 NDVTYSILIDMFCRRGKLDTALSFLGEMVDT-GLKLSVYPYNSLINGHCKFGDISAAEGF 459

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
             EM+    EP +   TSL+  Y    + +  +R  + +   GI P
Sbjct: 460 MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAP 505


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 4/256 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
            ++ +AF ++       +  D    +TLIK     G     L  ++++ A G + + ++Y
Sbjct: 107 AHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSY 166

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L++ + +A     V  + +++  + + P+   Y +++ +  + +   D   VY EM  
Sbjct: 167 GTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIV 226

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-- 277
           KG+   V  Y TL+     +G   EAF +  +MK  +N  PD +TFS +I      GK  
Sbjct: 227 KGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMK-LKNINPDVYTFSVLIDALGKEGKKK 285

Query: 278 -VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V EA ++F EM      P++    SLI    K    +  +  L  + E GI PD     
Sbjct: 286 MVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYT 345

Query: 337 CLLNVMTQTPKEELGK 352
            LL+ + +  + E+ K
Sbjct: 346 ILLDGLCKGGRLEIAK 361



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 4/197 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN---FDGCLNVYEEMKAIGVKPNM 156
           G ++ AF L +  + +    D   FS LI   G  G     D  ++++EEMK   + P++
Sbjct: 247 GKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDI 306

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +TYN+L+D + +     +   + KEM ++G+ P+  +Y  LL    +    E     ++ 
Sbjct: 307 VTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQH 366

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +  KG  L+V  YN ++      G   EA ++   M+  + C P++ TF ++I   S + 
Sbjct: 367 LLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKME-GKGCMPNAITFRTIICALSEKD 425

Query: 277 KVSEAEAMFNEMLEAGF 293
           +  +AE +  EM+  G 
Sbjct: 426 ENDKAEKILREMIARGL 442



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 4/212 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK--- 176
           D   ++TLI  +   G      ++  EMK   + P++ T++ L+D +G+  +   V    
Sbjct: 232 DVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAM 291

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
           ++++EM    + P+  TY SL+    +  + E  +++ +EMKE G+Q  V  Y  LL   
Sbjct: 292 SLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGL 351

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  + A E F+ +   + C  + W ++ MI      G   EA  + ++M   G  PN
Sbjct: 352 CKGGRLEIAKEFFQHL-LVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPN 410

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
                ++I    +    D   + L  +   G+
Sbjct: 411 AITFRTIICALSEKDENDKAEKILREMIARGL 442



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 124/294 (42%), Gaps = 22/294 (7%)

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           P    +NN+L ++ + KR   V +++K+   NG++P+  T + L+  +    +     SV
Sbjct: 56  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 115

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           +  + ++G        NTL+      G   +    F D   ++  Q D  ++ ++I    
Sbjct: 116 FANILKRGFHPDAITLNTLIKGLCFRGEIKKTL-YFHDQVVAQGFQLDQVSYGTLINGLC 174

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             G+      +  ++     +P++ +  ++I    K +   D     + +   GI+PD  
Sbjct: 175 KAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVV 234

Query: 334 FCGCLLN---VMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK--KEATEL 388
               L++   +M +  KE    L E   K+ +   Y   +L++    EG  K   EA  L
Sbjct: 235 TYTTLIHGFCIMGKM-KEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSL 293

Query: 389 F------NSISKDVKKAYCNCLID-LCVNLNLLENACKLL----ELGLTLEVYT 431
           F      N I   V     N LID LC N + LE A  LL    E G+  +VY+
Sbjct: 294 FEEMKHKNMIPDIVTY---NSLIDGLCKN-HHLERAIALLKEMKEHGIQPDVYS 343


>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
 gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
          Length = 370

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 4/212 (1%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
           P AF+ ++   G    FD   +V + MKA  V+  + T++ L+    RA    +    + 
Sbjct: 147 PEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEAIHAFN 206

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
            M D    P+   ++ L+    R R   +    +  +K+K  +  V +Y  L+      G
Sbjct: 207 RMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDK-FEPDVIVYTNLVRGWCRAG 265

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              EA  +F +MK +   +P+ +T+S +I ++C C G+++ A  +F EML+AG +PN   
Sbjct: 266 NISEAERVFGEMKVA-GIKPNVYTYSIVIDSLCRC-GQITRAHDVFAEMLDAGCQPNSIT 323

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             SL++ + KA RT+ V++  N++  LG  PD
Sbjct: 324 YNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPD 355



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 5/216 (2%)

Query: 99  AGNVEM---AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           AG V M   A+ + D  +     I    FS L++ Y  AG     ++ +  M+    KP+
Sbjct: 157 AGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEAIHAFNRMEDYNCKPD 216

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            I ++ L+  + R +R  + +  +  + D    P+   Y +L+R + RA    +   V+ 
Sbjct: 217 KIAFSILISILCRKRRASEAQEFFDSLKDK-FEPDVIVYTNLVRGWCRAGNISEAERVFG 275

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EMK  G++ +V  Y+ ++      G    A ++F +M  +  CQP+S T++S++ I    
Sbjct: 276 EMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDA-GCQPNSITYNSLMRIHVKA 334

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           G+  +   ++N+M   G EP+      LI+ + K +
Sbjct: 335 GRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDE 370



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 49/104 (47%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAGN+  A  ++   +    + +   +S +I      G      +V+ EM   G +PN I
Sbjct: 263 RAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSI 322

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           TYN+L+    +A R  +V  +Y +M   G  P+  TY  L+  +
Sbjct: 323 TYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETH 366


>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 918

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 3/259 (1%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N++ A  +  + + E++R     F  +I  +  AG     L +++ M+  G  P + TYN
Sbjct: 534 NMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYN 593

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+  +   ++  +   I  +M   G+ PN +TY +L++ Y      E     +  ++ +
Sbjct: 594 ALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNE 653

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G+++ V  Y  LL  C   G    A  + ++M S++N   +++ ++ +I   + RG V E
Sbjct: 654 GLEIDVYTYEALLKSCCKSGRMQSALAVTKEM-SAKNIPRNTFVYNILIDGWARRGDVWE 712

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           A  +  +M + G  P++   TS +    KA         +  +   GI P+ +    L+N
Sbjct: 713 AADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLIN 772

Query: 341 VMTQTPKEELGKLVECVEK 359
              +    E  K + C E+
Sbjct: 773 GWARASMPE--KALSCFEE 789



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 154/341 (45%), Gaps = 10/341 (2%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           T  GN E    ++DR +   +     ++  LI LY   G     L + + MK  G+K NM
Sbjct: 425 TMIGNEEKCLIVFDRLKECGFSPSVISYGCLINLYTKIGKVSKALQISKMMKMSGIKHNM 484

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            TY+ L++   + K      +++++ T +GL P+   Y +++ A+      +  + + ++
Sbjct: 485 KTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQ 544

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M+++  + +   +  ++   A  G    A EIF+ M+ S  C P   T++++I     + 
Sbjct: 545 MQKERYRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRS-GCIPTVHTYNALILGLVEKR 603

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           K+++A A+ ++M  AG  PN    T+L+Q Y     T+   +  + L   G+  D     
Sbjct: 604 KMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYE 663

Query: 337 CLLNVMTQTPKEE--LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
            LL    ++ + +  L    E   K+  +  +V  +L++     GD   EA +L   + K
Sbjct: 664 ALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDV-WEAADLMQQMRK 722

Query: 395 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 435
           +        L D+    + +   CK  ++    E+  ++++
Sbjct: 723 E------GVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEA 757



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 7/220 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+ E AF  +   RNE   ID   +  L+K    +G     L V +EM A  +  N   Y
Sbjct: 638 GDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVY 697

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   R    W+   + ++M   G+ P+ +TY S + A  +A   +    + +EM+ 
Sbjct: 698 NILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEA 757

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++ ++  Y TL+   A     ++A   FE+MK +E  +PD   +  ++T    R   +
Sbjct: 758 FGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAE-LKPDKAAYHCLMTSLLSRATFA 816

Query: 280 EAE------AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
           ++       ++  EM+E+    ++       +C  K +RT
Sbjct: 817 QSYVYSGLLSVCREMIESEMTVDMGTAVHWSRCLRKIERT 856



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 5/212 (2%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           N+   +  +E +K    KP    Y  ++    R       +  ++ M   G+ P+ + Y+
Sbjct: 258 NWQAVVTAFERIK----KPARKEYGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYS 313

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           SL+ AY   R  E+ L   R+MKE+G+++++  Y+ ++   A +G  D A   F++ K  
Sbjct: 314 SLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEK 373

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
                ++ T+ S+I        +  AEA+  EM   G +  + +  +++  Y      + 
Sbjct: 374 LPSL-NAVTYGSIIYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEK 432

Query: 316 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
            +   +RL E G +P     GCL+N+ T+  K
Sbjct: 433 CLIVFDRLKECGFSPSVISYGCLINLYTKIGK 464



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 110/250 (44%), Gaps = 9/250 (3%)

Query: 95  YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           Y  R G++  A   ++  +        + +S+LI  Y    + +  L+   +MK  G++ 
Sbjct: 283 YYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEM 342

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
            ++TY+ ++    +  +       +KE  +   S N  TY S++ A+ +    +   ++ 
Sbjct: 343 TIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVTYGSIIYAHCQTCNMDRAEALV 402

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           REM+ +G+   + +Y+T++     +G  ++   +F+ +K      P   ++  +I + + 
Sbjct: 403 REMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKEC-GFSPSVISYGCLINLYTK 461

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--- 331
            GKVS+A  +   M  +G + N+   + LI  + K +   +         + G+ PD   
Sbjct: 462 IGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVL 521

Query: 332 -----DRFCG 336
                  FCG
Sbjct: 522 YNNIITAFCG 531



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G+V  A  L  + R E    D + +++ +     AG+      + +EM+A G+KPN+ 
Sbjct: 706 RRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLK 765

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGED-----TL 211
           TY  L++   RA  P +  + ++EM    L P+   Y  L+ +   RA + +       L
Sbjct: 766 TYTTLINGWARASMPEKALSCFEEMKLAELKPDKAAYHCLMTSLLSRATFAQSYVYSGLL 825

Query: 212 SVYREMKEKGMQLSV 226
           SV REM E  M + +
Sbjct: 826 SVCREMIESEMTVDM 840


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 2/229 (0%)

Query: 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174
           EK  +  + FS  ++ +  A      + ++E MK    +  + T N LLD++GRAK   +
Sbjct: 168 EKRLLTLDTFSIAMRAFAAAKERKKAVGIFELMKNHKYRVGVETINALLDSLGRAKLGKE 227

Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
            + ++ ++ +   +PN  TY  LL  + R +   +   ++ EM ++G +  +  +N +L 
Sbjct: 228 AQALFGKL-EGRFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLE 286

Query: 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
                    +A + FE MK+ +   PD  +++ +I     + K+ EA   F EM+++G  
Sbjct: 287 GLLRSKKRSDAIKFFEVMKA-KGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCH 345

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           P+  V T L+  YG  +R D V   L  + E G  PD +    L+ +MT
Sbjct: 346 PDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMT 394



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 118/249 (47%), Gaps = 11/249 (4%)

Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R  PN   ++ L+  +    N      ++ EM   G KP+++T+N +L+ + R+K+    
Sbjct: 238 RFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDA 297

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
              ++ M   G SP+  +Y  L+R   +    ++ +  + EM + G      +Y  L+  
Sbjct: 298 IKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTG 357

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
             +    D  +E+ ++MK  + C PD  T++++I + + +    +A  ++ +M++ G EP
Sbjct: 358 YGNHKRMDMVYELLKEMKE-KGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEP 416

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR----FCGCLLNVMTQTPKEELG 351
           ++     +++ Y + +  +      + + + G  PDD     F G L+   +Q   EE  
Sbjct: 417 SIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLI---SQGRSEEAC 473

Query: 352 K-LVECVEK 359
           K L E +EK
Sbjct: 474 KYLEEMIEK 482



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 2/179 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++ LI+           +  + EM   G  P+   Y  L+   G  KR   V  + 
Sbjct: 312 DVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELL 371

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           KEM + G  P+  TY +L++     R  +D + +Y++M + G++ S+  YN ++     +
Sbjct: 372 KEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRI 431

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNL 297
              +    ++++M     C PD  +++  I     +G+  EA     EM+E G + P L
Sbjct: 432 RNYEMGHAVWDEMSKKGFC-PDDNSYTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQL 489



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 3/232 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R  N+  A  +++   +E ++ D    + +++    +      +  +E MKA G  P++ 
Sbjct: 255 RVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVR 314

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +Y  L+  + +  +  +    + EM D+G  P+   Y  L+  YG  +  +    + +EM
Sbjct: 315 SYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEM 374

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           KEKG       YN L+ +       D+A  I++ M  +   +P   ++ +MI     R +
Sbjct: 375 KEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQN-GIEPSIHSY-NMIMKSYFRIR 432

Query: 278 VSE-AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
             E   A+++EM + GF P+    T  I       R+++  + L  + E G+
Sbjct: 433 NYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEEACKYLEEMIEKGM 484



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 69/154 (44%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           ++M + L    + +    D   ++ LIKL  +    D  + +Y++M   G++P++ +YN 
Sbjct: 364 MDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNM 423

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           ++ +  R +       ++ EM+  G  P+ N+Y   +         E+      EM EKG
Sbjct: 424 IMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEEACKYLEEMIEKG 483

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           M+     YN   A  +  G  D   E+ + MK S
Sbjct: 484 MKAPQLDYNKFAADFSRAGKPDILEELAQKMKFS 517



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
           G   +  TY S++    +AR  E  +S+  EM EK + L++  ++  +   A      +A
Sbjct: 135 GFVHDSRTYHSMMIILAKARQFETMMSMLEEMGEKRL-LTLDTFSIAMRAFAAAKERKKA 193

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-EAEAMFNEMLEAGFEPNLFVLTSLI 304
             IFE MK+ +  +    T ++++     R K+  EA+A+F + LE  F PNL   T L+
Sbjct: 194 VGIFELMKNHK-YRVGVETINALLDSLG-RAKLGKEAQALFGK-LEGRFTPNLRTYTVLL 250

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             + + +   +  R  N + + G  PD
Sbjct: 251 NGWCRVKNLMEAGRIWNEMLDEGFKPD 277


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 110/232 (47%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  A  L+D      ++ + +++S +IK     G     + + E MK +G +P+++ Y
Sbjct: 175 GKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIY 234

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++D + + +   +   I+ +M   G+ P   TY SL+         ++   +  EMK 
Sbjct: 235 NTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKG 294

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
             +   +  ++ L+ +    G   EA  I + M +    +PD  T+++++     R +V 
Sbjct: 295 GNIMPDLVAFSVLIDIMCKEGEVSEARVILKTM-TEMGVEPDVATYNTLMNGYCLRMEVV 353

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA  +F  M+  G  P++F  + L+  Y KA+R D+  +  + +   G+ PD
Sbjct: 354 EARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPD 405



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 106 FGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
           +G     +  K  ++PN   FSTLI  +   G     + +++ M A G KPN+ +Y+ ++
Sbjct: 144 YGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIII 203

Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
             + R  +  +V  + + M   G  P+   Y +++    + R   + + ++ +MK  G+ 
Sbjct: 204 KGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGIL 263

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
            +V  Y +L+    ++G   EAF +  +MK   N  PD   FS +I I    G+VSEA  
Sbjct: 264 PTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGG-NIMPDLVAFSVLIDIMCKEGEVSEARV 322

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYG------KAQRTDDVVRALNRLPEL 326
           +   M E G EP++    +L+  Y       +A++  +V+ +  R+P++
Sbjct: 323 ILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDV 371



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 1/169 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +FS L+  Y  A   D    +++EM   G+ P+ ++YN L+  + +A+RP + + ++
Sbjct: 370 DVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELF 429

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           K+M  NG  PN  TY+ LL    +  Y +  + ++R M+  G++  +  YN ++      
Sbjct: 430 KDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKY 489

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
           G   +A E+F ++ S +  QP++W  +  I      G + EA   F +M
Sbjct: 490 GKFKDARELFAEL-SVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQM 537



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 1/231 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AFGL +  +      D  AFS LI +    G       + + M  +GV+P++ TYN L++
Sbjct: 285 AFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMN 344

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                    + + +++ M   G  P+  +++ L+  Y +A+  ++   ++ EM  +G+  
Sbjct: 345 GYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIP 404

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               YNTL++         EA E+F+DM S+    P+  T+S ++   S +G + +A  +
Sbjct: 405 DTVSYNTLISGLCQARRPLEAEELFKDMHSN-GYPPNLVTYSILLDCLSKQGYLDQAMGL 463

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           F  M  +G +P+L     +I    K  +  D       L   G+ P++  C
Sbjct: 464 FRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVC 514



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 3/213 (1%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  + + LI  +    + D   +V  ++  +G++PN+IT++ L++      +  +   ++
Sbjct: 125 DVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELF 184

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD 238
             M   G  PN ++Y+ +++   R     + + +   MK  G +  V +YNT++  +C D
Sbjct: 185 DVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKD 244

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
               +EA  IF  MK +    P   T++S+I      G+  EA  + NEM      P+L 
Sbjct: 245 -RLVNEAVHIFCKMKGT-GILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLV 302

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + LI    K     +    L  + E+G+ PD
Sbjct: 303 AFSVLIDIMCKEGEVSEARVILKTMTEMGVEPD 335



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 74/165 (44%), Gaps = 9/165 (5%)

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +  M +    P+   +  L  A  R ++ +  +S+ ++M+  G+   V     L+     
Sbjct: 79  FNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCR 138

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           + + D  F +   +      +P+  TFS++I      GK+  A  +F+ M+  G++PN+ 
Sbjct: 139 LCHVDYGFSVLGKI-IKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVH 197

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
             + +I+   +  +T +V++ L  +  +G  PD        DR C
Sbjct: 198 SYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLC 242



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 91/199 (45%), Gaps = 3/199 (1%)

Query: 133 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192
           T  N +  L+ +  M      P+++ +  L   + R K    V ++ K+M   G+S +  
Sbjct: 68  TFRNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVL 127

Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFED 251
           +   L+  + R  + +   SV  ++ + G++ +V  ++TL+   C + G    A E+F D
Sbjct: 128 SLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIE-GKIGRAIELF-D 185

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           +  +   +P+  ++S +I      GK +E   +   M   G EP++ +  +++    K +
Sbjct: 186 VMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDR 245

Query: 312 RTDDVVRALNRLPELGITP 330
             ++ V    ++   GI P
Sbjct: 246 LVNEAVHIFCKMKGTGILP 264


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 112/234 (47%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG VE+AF L+ R   + ++ D   +S ++       N +   +++ +M      P+  
Sbjct: 363 RAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAY 422

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y +L+    R +       +++ M D+G+SPN  T   L+  +G+ R  ++      ++
Sbjct: 423 NYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKV 482

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           ++ G+  ++ +Y  ++     V  +D  + IF DM       PD+  +S +I       K
Sbjct: 483 RQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADM-IKRGYVPDTVVYSIIIDSFVKALK 541

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + EA  +F++ML+ G +PN+F  TSLI       R  +VV     +   G+TPD
Sbjct: 542 LPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPD 595



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 108/210 (51%), Gaps = 3/210 (1%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            F+ +I+ +   G     + V++ MK  G+ P+  +Y+ L+D + +         +  EM
Sbjct: 283 CFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEM 342

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             NG++P   +Y+SLL    RA   E    ++R ++E+G +    +Y+ +L  C      
Sbjct: 343 ARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNI 402

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLT 301
           +   +++ DM    N  PD++ ++S+I    CR + +++A  +F  ML++G  PN+   T
Sbjct: 403 EVVCDLWNDM-VHHNFVPDAYNYTSLIY-AFCRHRNLTDALGVFELMLDSGVSPNVVTCT 460

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            L+  +GK +  D+    L+++ + GI P+
Sbjct: 461 ILVDGFGKERMIDEAFLFLHKVRQFGIVPN 490



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 105/240 (43%), Gaps = 1/240 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N+E+   L++   +  +  D   +++LI  +    N    L V+E M   GV PN++T  
Sbjct: 401 NIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCT 460

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            L+D  G+ +   +      ++   G+ PN   Y  ++    +    +    ++ +M ++
Sbjct: 461 ILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKR 520

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
           G      +Y+ ++          EAF +F  M   E  +P+ +T++S+I       ++ E
Sbjct: 521 GYVPDTVVYSIIIDSFVKALKLPEAFRLFHKML-DEGTKPNVFTYTSLINGLCHDDRLPE 579

Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
              +F  M+  G  P+  + TSLI CY K       +     + +LG++ D     CL+ 
Sbjct: 580 VVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIG 639



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 1/192 (0%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
            +G++       +  D   +S +I  +  A        ++ +M   G KPN+ TY +L++
Sbjct: 510 VWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLIN 569

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
            +    R  +V T++K M   GL+P+   Y SL+  Y +    +  L ++R M + G+  
Sbjct: 570 GLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSA 629

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
              LY  L+   + V   D A  + E+M +++   P   T++++I      G   +A   
Sbjct: 630 DAFLYTCLIGGFSKVLAMDGAQCLMEEM-TNKGLTPSVVTYTNLIIGYFKIGDERKANMT 688

Query: 285 FNEMLEAGFEPN 296
           +N ML+AG  P+
Sbjct: 689 YNSMLQAGITPD 700



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 6/241 (2%)

Query: 102 VEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           ++ AF    + R  ++ I PN   +  +I         D    ++ +M   G  P+ + Y
Sbjct: 472 IDEAFLFLHKVR--QFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVY 529

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + ++D+  +A +  +   ++ +M D G  PN  TY SL+          + +++++ M  
Sbjct: 530 SIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIW 589

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G+     LY +L+           A EIF  M        D++ ++ +I   S    + 
Sbjct: 590 EGLTPDRILYTSLIVCYCKRSNMKAALEIFRGM-GKLGLSADAFLYTCLIGGFSKVLAMD 648

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            A+ +  EM   G  P++   T+LI  Y K           N + + GITPD +   C+L
Sbjct: 649 GAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITPDAKL-SCIL 707

Query: 340 N 340
            
Sbjct: 708 G 708



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 3/205 (1%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT--IYKEMTDNGLSPNWNTYASLLR 199
           +++++MK+ G  PN+ +Y+ L+       R +  +   +  EM   G+ PN  TY + L 
Sbjct: 195 SLFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLY 254

Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
              R R      +  + + ++G   +   +N ++      G   EA E+F+ MK      
Sbjct: 255 GLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKG-GLV 313

Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           PD+ ++S ++     +G V     +  EM   G  P L   +SL+    +A + +     
Sbjct: 314 PDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFEL 373

Query: 320 LNRLPELGITPDDRFCGCLLNVMTQ 344
             RL E G   D      +LN   Q
Sbjct: 374 FRRLEEQGFKHDHIVYSIILNGCCQ 398



 Score = 42.7 bits (99), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 8/137 (5%)

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
             YA+++R +      ED L  Y E K+ G++L   L N LL    +      A  +F+D
Sbjct: 142 QVYATIIRIFVELSMFEDALLTYTEAKKVGVELQ--LCNFLLKCLVERNQIIYARSLFDD 199

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEA--MFNEMLEAGFEPNLFVLTSLIQCYGK 309
           MKSS    P+ +++S +++  +   ++  AEA  + +EM   G +PN     + +  YG 
Sbjct: 200 MKSSGP-SPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYL--YGL 256

Query: 310 AQRTDDVVRALNRLPEL 326
           + RT  V  A N L  L
Sbjct: 257 S-RTRQVASAWNFLQML 272


>gi|410110059|gb|AFV61109.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia salsoloides]
          Length = 433

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 129/289 (44%), Gaps = 41/289 (14%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++   R  K  +D    + +I +YG  G       ++  M+ +G++PN+++YN LL 
Sbjct: 136 ALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 195

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G A+   +   +++ M    +  N  TY S++  YG+    E   ++ +EM+ +G++ 
Sbjct: 196 VYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQGRGIEP 255

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-------------- 270
           +   Y+T++++   VG  D A  +F+ ++SS   + D   F +MI               
Sbjct: 256 NSITYSTIISIWGKVGKLDRAAMLFQKLRSS-GVEIDQILFQTMIVAYERAGLVAHAKRL 314

Query: 271 -----------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313
                            I +  G++ EA  +F   ++AG   ++ V   +I  + K ++ 
Sbjct: 315 LHELKSPDNIPRDTAIHILAGAGRIEEATYVFRRAIDAGEVKDITVFERMIHLFSKYKKY 374

Query: 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 362
            +VV   +++  LG  PD      +LN          GKL E  +K+NS
Sbjct: 375 ANVVEVFDKMRGLGYFPDSNVIALVLNA--------YGKLHE-FDKANS 414



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 101/202 (50%), Gaps = 1/202 (0%)

Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
           D  R+     D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   + 
Sbjct: 1   DEMRDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
               +  +I+  +  +G +P+   Y + +  +G+A+   +  S+  EM+  G+  +   Y
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASY 120

Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
           +TLL M  +     EA  +F +++  + C  D  T + MI +    G   EA+ +F  M 
Sbjct: 121 STLLTMYVENKKFLEALSVFSELREMK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMR 179

Query: 290 EAGFEPNLFVLTSLIQCYGKAQ 311
           + G EPN+    +L++ YG A+
Sbjct: 180 KMGIEPNVVSYNTLLRVYGDAE 201



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 26  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 85

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N  ++  G+AK   + +++  EM   G+ PN  +Y++LL  Y   +   + LSV+ E++E
Sbjct: 86  NAXINVFGKAKLFREARSLISEMRIAGVMPNTASYSTLLTMYVENKKFLEALSVFSELRE 145

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 146 MKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 205

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 206 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQGRGIEPNSITYSTII 264

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 265 SIWGKVGKLDRAAMLFQKLRSSGVEID 291



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 114/263 (43%), Gaps = 36/263 (13%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++ R +   +  D  A++  I ++G A  F    ++  EM+  GV PN  +Y+ LL 
Sbjct: 66  AISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASYSTLLT 125

Query: 165 TMGRAKRPWQVKTIYKE-----------------------------------MTDNGLSP 189
                K+  +  +++ E                                   M   G+ P
Sbjct: 126 MYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 185

Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
           N  +Y +LLR YG A    + + ++R M+ K ++ +V  YN+++ +       ++A  + 
Sbjct: 186 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 245

Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
           ++M+     +P+S T+S++I+I    GK+  A  +F ++  +G E +  +  ++I  Y +
Sbjct: 246 QEMQ-GRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYER 304

Query: 310 AQRTDDVVRALNRLPELGITPDD 332
           A       R L+ L      P D
Sbjct: 305 AGLVAHAKRLLHELKSPDNIPRD 327



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/249 (20%), Positives = 110/249 (44%), Gaps = 32/249 (12%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 180 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 239

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM   G+ PN  TY++++  +G+    +    ++++++  G+++   L+ T++
Sbjct: 240 KANNLIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 299

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSW------------------------------ 263
                 G    A  +  ++KS +N   D+                               
Sbjct: 300 VAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRRAIDAGEVKDIT 359

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
            F  MI + S   K +    +F++M   G+ P+  V+  ++  YGK    D        +
Sbjct: 360 VFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANSVYMEM 419

Query: 324 PELGITPDD 332
            E+G    D
Sbjct: 420 QEVGCVFSD 428



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           EM D  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   + 
Sbjct: 2   EMRDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
              +A  IF  +K S    PD   +++ I +        EA ++ +EM  AG  PN    
Sbjct: 62  DYSKAISIFSRLKRS-GFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASY 120

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           ++L+  Y + ++  + +   + L E+    D   C  +++V  Q
Sbjct: 121 STLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQ 164


>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 689

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 145/305 (47%), Gaps = 20/305 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG + M   L+ +A ++  ++D   FS+ I +Y   G      +VY+ M   G+ PN++
Sbjct: 225 KAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVV 284

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVY 214
           TY  L+  + +  R ++   IY ++   GL P+  TY+SL+     YG  R G    ++Y
Sbjct: 285 TYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSG---FALY 341

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            +M + G    V +Y  L+      G    A   F      ++ +P+   F+S+I     
Sbjct: 342 EDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALR-FSVKTLGQSIRPNVVVFNSLIDGWCR 400

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-R 333
             +  EA  +F  M   G +P++  +T+L++      R  + +    R+ ++G+ PD   
Sbjct: 401 LNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPDAVA 460

Query: 334 FCGCLLNVMTQTPKEELG-KLVECVEKSN-----SKLGYVVKLLLEEQDIEGDFKKEATE 387
           FC  L++   +  K  +G +L + ++++      +    V+ LL + Q +E     EA++
Sbjct: 461 FC-TLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQSVE-----EASK 514

Query: 388 LFNSI 392
            FN++
Sbjct: 515 FFNNL 519



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ AF L+          D  A+STLI  Y  AG       ++ +    GVK +++
Sbjct: 190 KRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVV 249

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            +++ +D   +         +YK M   G+SPN  TY  L++   +     +   +Y ++
Sbjct: 250 VFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIYCQI 309

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            ++G++ SV  Y++L+      G     F ++EDM       PD   +  ++     +G 
Sbjct: 310 LKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDM-IKMGYPPDVVIYGVLVDGLCKQGL 368

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  A     + L     PN+ V  SLI  + +  R D+ ++    +   GI PD
Sbjct: 369 MLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPD 422



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 93/190 (48%), Gaps = 1/190 (0%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G  PN++T+  L++   +     +   ++K M   G++P+   Y++L+  Y +A      
Sbjct: 173 GPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMG 232

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
             ++ +   KG++L V ++++ + +    GY   AF++++ M   +   P+  T++ +I 
Sbjct: 233 HKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRM-LCQGISPNVVTYTILIK 291

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G++ EA  ++ ++L+ G EP++   +SLI  + K             + ++G  P
Sbjct: 292 GLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPP 351

Query: 331 DDRFCGCLLN 340
           D    G L++
Sbjct: 352 DVVIYGVLVD 361



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 99/259 (38%), Gaps = 36/259 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  AFG+Y +            +S+LI  +   GN      +YE+M  +G  P+++ Y
Sbjct: 297 GRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVVIY 356

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
             L+D + +            +     + PN   + SL+  + R    ++ L V+R M  
Sbjct: 357 GVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGI 416

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM----------- 268
            G++  V    TL+ +    G   E   +F  M      +PD+  F ++           
Sbjct: 417 YGIKPDVATITTLMRVTVMEGRLKEGLFLFFRM-FKMGLEPDAVAFCTLMDAFCKNMKPT 475

Query: 269 -----------------ITICSC------RGK-VSEAEAMFNEMLEAGFEPNLFVLTSLI 304
                            I +C+       +G+ V EA   FN +LE   EP++    ++I
Sbjct: 476 IGLQLFDLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMI 535

Query: 305 QCYGKAQRTDDVVRALNRL 323
             Y   +R D+  R    L
Sbjct: 536 CGYCSLRRLDEAARIFEML 554



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 5/203 (2%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I PN   F++LI  +      D  L V+  M   G+KP++ T   L+       R  +  
Sbjct: 384 IRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGL 443

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            ++  M   GL P+   + +L+ A+ +       L ++  M+   +   + + N ++ + 
Sbjct: 444 FLFFRMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLL 503

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEP 295
                 +EA + F ++   +  +PD  T+++MI   CS R ++ EA  +F  +    F P
Sbjct: 504 FKGQSVEEASKFFNNLLEGKM-EPDIVTYNTMICGYCSLR-RLDEAARIFEMLKFTPFGP 561

Query: 296 NLFVLTSLIQCYGKAQRTDDVVR 318
           N   LT LI    K    D  +R
Sbjct: 562 NAVTLTILIHTLCKNSDMDGALR 584


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 6/235 (2%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A+ +++    E    +  +++ LI  +   G  D  L ++ +MK  G  P++ TY  L+ 
Sbjct: 244 AYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVA 303

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
                 +  +    ++EM +NG+ PN  TY  L+  + +    ++ + +   M EKG+  
Sbjct: 304 AFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVS 363

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGK-VSEAE 282
           SV  +N L+      G  ++A  + + MK ++ C P+S T++ +  IC  CR K +  A 
Sbjct: 364 SVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVC-PNSRTYNEL--ICGFCRKKSMDRAM 420

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCG 336
           A+ N+M E    PNL    +LI    KA+  D   R  + + + G  PD R FC 
Sbjct: 421 ALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCA 475



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 121/270 (44%), Gaps = 5/270 (1%)

Query: 64  QYPHGKTGS----SPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRI 119
            Y HG   +     P  +I V     RA++    S      +   A  + +   + ++ +
Sbjct: 94  HYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEARFVLNLLTHHEFSL 153

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
              +++ L  +    G  D    ++++M   GV+PN+I++N +++   +       K  +
Sbjct: 154 SVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYF 213

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +   G   +  TY SL+  Y +     D   V+  M ++G   +   Y  L+    +V
Sbjct: 214 CGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEV 273

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  DEA E+F  MK  + C PD  T++ ++      GK +EA   F EM+E G EPN++ 
Sbjct: 274 GKIDEALELFFQMK-EDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYT 332

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
            T LI  + K  + D+ +  L+ + E G+ 
Sbjct: 333 YTVLIDYFCKVGKMDEGMEMLSTMLEKGLV 362



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 106/256 (41%), Gaps = 3/256 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +A  V+ A+ L+     + +  D   F   I      G  +    V+E +K    + N  
Sbjct: 447 KARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEF 506

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  L+D   +A++      ++K M   G  PN  T+  LL    +    ED +S+   M
Sbjct: 507 LYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVM 566

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
            +   + +V  Y  L+         D A  +F D   S  CQP+  T+++ I     +G+
Sbjct: 567 GKFDAKPTVHTYTILIEEILRESDFDRA-NMFLDQMISSGCQPNVVTYTAFIKAYCRQGR 625

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           + EAE M  ++ E G   + F+   L+  YG   + D     L R+ + G  P  +    
Sbjct: 626 LLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSI 685

Query: 338 LLN--VMTQTPKEELG 351
           LL   +  +  KE +G
Sbjct: 686 LLKHLIFEKYNKEGMG 701



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 119/304 (39%), Gaps = 62/304 (20%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G VE A  +++  + +    +   ++ LI  Y  A  F     +++ M   G  PN I
Sbjct: 482 KMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSI 541

Query: 158 TYNNLLD----------------TMGR--AKRPWQVKTIYKE-----------------M 182
           T+N LLD                 MG+  AK      TI  E                 M
Sbjct: 542 TFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQM 601

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
             +G  PN  TY + ++AY R     +   +  ++KE+G+ L   +Y+ L+     +G  
Sbjct: 602 ISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQL 661

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMI-------------------TICSCRG----KVS 279
           D AF +   M  +  C+P   T+S ++                   T  S       K++
Sbjct: 662 DSAFGVLIRMFDT-GCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIA 720

Query: 280 EAE---AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           + E    +F +M+E G  PN+   + LI+   K +      R  N + E GI+P +    
Sbjct: 721 DFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHN 780

Query: 337 CLLN 340
            LL+
Sbjct: 781 SLLS 784



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 32/229 (13%)

Query: 93  KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
           K+Y  R G +  A  +  + + E   +D   +  L+  YG  G  D    V   M   G 
Sbjct: 618 KAY-CRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGC 676

Query: 153 KPNMITYNNLLDTMGRAK--------------------RPWQVK------TIYKEMTDNG 186
           +P+  TY+ LL  +   K                      W++        ++++M + G
Sbjct: 677 EPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQG 736

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
             PN NTY+ L++   +  +      ++  MKE G+  S  ++N+LL+ C  +G  +EA 
Sbjct: 737 CVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEAL 796

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSC--RGKVSEAEAMFNEMLEAGF 293
            + + M    +    +   S  + +C    +G   +AE +F  +L  G+
Sbjct: 797 RLLDSMMEYNHL---AHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGY 842



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 12/249 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  + D  +  K   +   ++ LI  +    + D  + +  +M    + PN++
Sbjct: 377 KRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLV 436

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + +A+       ++  M  +G  P+  T+ + +    +    E    V+  +
Sbjct: 437 TYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESL 496

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           KEK  + +  LY  L+   C    ++D A  +F+ M   E C P+S TF+ ++      G
Sbjct: 497 KEKHAEANEFLYTALIDGYCKAEKFSD-AHLLFKRM-LFEGCFPNSITFNVLLDGLRKEG 554

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           KV +A ++ + M +   +P +   T LI+   +  R  D  RA N   +  I+      G
Sbjct: 555 KVEDAMSLVDVMGKFDAKPTVHTYTILIE---EILRESDFDRA-NMFLDQMISS-----G 605

Query: 337 CLLNVMTQT 345
           C  NV+T T
Sbjct: 606 CQPNVVTYT 614



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 14/139 (10%)

Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
           LSVT YN L  + +  G  DE   +F+DM + +  +P+  +F++M+      G V  A+A
Sbjct: 153 LSVTSYNRLFMVLSRFGLIDELNCLFKDMLN-DGVEPNLISFNTMVNAHCKIGNVVVAKA 211

Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
            F  +++ GF  + F  TSLI  Y K     D  +    +P+          GCL N ++
Sbjct: 212 YFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQE---------GCLRNEVS 262

Query: 344 QTPKE----ELGKLVECVE 358
            T       E+GK+ E +E
Sbjct: 263 YTNLIHGFCEVGKIDEALE 281


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 98  RAGNVEMA----FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
           RA N+  A    F +  R+ N   ++    F++LI+ YG AG F   +N+++ MK +G+ 
Sbjct: 115 RARNLNAARNFLFSIEKRS-NGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTMKKMGIS 173

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLS 212
           P+++T+N+LL  + +  R      ++ EM    G++P+  T+ +L+  + +    +   +
Sbjct: 174 PSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFT 233

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITI 271
           +++EM+       V  YNT++      G    A  +   M K +    P+  ++++++  
Sbjct: 234 IFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRG 293

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
              + ++ EA  +F+EML  G +PN     +LI+   +A R D++
Sbjct: 294 YCMKQEIDEALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEI 338



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 5/203 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   MA  ++D  R   + + P++  F+TLI  +      D    +++EM+     P+
Sbjct: 188 KRGRTGMAHDMFDEMR-RTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPD 246

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSV 213
           ++TYN ++D + RA +      +   M      + PN  +Y +LLR Y   +  ++ L V
Sbjct: 247 VVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLV 306

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + EM  +G++ +   YNTL+   ++    DE         +     PD+ TF+ +I    
Sbjct: 307 FHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAHC 366

Query: 274 CRGKVSEAEAMFNEMLEAGFEPN 296
             G +  A  +F EML     P+
Sbjct: 367 DAGHLDAAMKVFQEMLNMKLHPD 389



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 9/204 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG V++A  L +    +   + PN  +++TL++ Y      D  L V+ EM   G+KPN
Sbjct: 259 RAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGLKPN 318

Query: 156 MITYNNLLDTMGRAKRPWQVKT-IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
            +TYN L+  +  A R  ++K  +         SP+  T+  L++A+  A + +  + V+
Sbjct: 319 AVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAHCDAGHLDAAMKVF 378

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------NCQPDSWTFSSM 268
           +EM    +      Y+ L+         D+A  +F ++   E       C+P +  ++ M
Sbjct: 379 QEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFNELFEKEVLLGKNECKPLAAAYNLM 438

Query: 269 ITICSCRGKVSEAEAMFNEMLEAG 292
                  GK  +AE +F ++++ G
Sbjct: 439 FEYLCANGKAKQAEKVFRQLMKRG 462



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 97/210 (46%), Gaps = 40/210 (19%)

Query: 162 LLDTMGRAKRPWQVKTIY--KEMTDNGLSPNWNTY-ASLLRAYGRARYGEDTLSVYREMK 218
           +L+ +GRA+     +      E   NG     + Y  SL+R+YG A   ++++++++ MK
Sbjct: 109 MLEFLGRARNLNAARNFLFSIEKRSNGCVKLQDRYFNSLIRSYGNAGLFQESVNLFQTMK 168

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICS---- 273
           + G+  SV  +N+LL++    G T  A ++F++M+ +    PDS+TF+++I+  C     
Sbjct: 169 KMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMV 228

Query: 274 -----------------------------CR-GKVSEAEAMFNEMLE--AGFEPNLFVLT 301
                                        CR GKV  A  + N ML+      PN+   T
Sbjct: 229 DQAFTIFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYT 288

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +L++ Y   Q  D+ +   + +   G+ P+
Sbjct: 289 TLLRGYCMKQEIDEALLVFHEMLTRGLKPN 318


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 1/245 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR  +      L  +      + D   F+ +I     +GN D  + ++E+MK  G KP  
Sbjct: 365 TRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTA 424

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            T+N L+   G+  +  +   +   M  D  L PN  T   L++A+   R  E+  ++  
Sbjct: 425 STFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVY 484

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M+  G++  V  +NTL    A +G T  A ++          +P+  T  +++      
Sbjct: 485 KMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE 544

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           GK+ EA   F  M E G  PNLFV  SLI+ +      D V   ++ + E G+ PD    
Sbjct: 545 GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTF 604

Query: 336 GCLLN 340
             L+N
Sbjct: 605 STLMN 609



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 38/272 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG----------------- 139
           + +GN++ A  ++++ +    +   + F+TLIK YG  G  +                  
Sbjct: 400 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPN 459

Query: 140 -------------------CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIY 179
                                N+  +M++ GVKP+++T+N L     R       +  I 
Sbjct: 460 DRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMII 519

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  N + PN  T  +++  Y      E+ L  +  MKE G+  ++ ++N+L+    ++
Sbjct: 520 PRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNI 579

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              D   E+  D+      +PD  TFS+++   S  G +   E ++ +MLE G +P++  
Sbjct: 580 NDMDGVGEVV-DLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHA 638

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + L + Y +A   +   + LN++ + G+ P+
Sbjct: 639 FSILAKGYARAGEPEKAKQILNQMRKFGVRPN 670



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 90/171 (52%), Gaps = 2/171 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L++ +    RP +  +I+  + + G  P+  TY +L+ A  R ++    LS+  ++++ G
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++    L+N ++   ++ G  D+A +IFE MK S  C+P + TF+++I      GK+ E+
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKES-GCKPTASTFNTLIKGYGKIGKLEES 443

Query: 282 EAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + + ML +   +PN      L+Q +   ++ ++    + ++   G+ PD
Sbjct: 444 SRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPD 494



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 100/202 (49%), Gaps = 5/202 (2%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G KP++ITY  L+  + R K    + ++  ++  NGL P+   + +++ A   +   +  
Sbjct: 349 GHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 408

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + ++ +MKE G + + + +NTL+     +G  +E+  + + M   E  QP+  T + ++ 
Sbjct: 409 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQ 468

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELG 327
               + K+ EA  +  +M   G +P++    +L + Y +   T   +D++  + R+    
Sbjct: 469 AWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNK 526

Query: 328 ITPDDRFCGCLLNVMTQTPKEE 349
           + P+ R CG ++N   +  K E
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKME 548



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 88/172 (51%), Gaps = 4/172 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G +E A   + R +  +  + PN   F++LIK +    + DG   V + M+  GVKP+++
Sbjct: 545 GKMEEALRFFYRMK--ELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T++ L++         + + IY +M + G+ P+ + ++ L + Y RA   E    +  +M
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQM 662

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           ++ G++ +V +Y  +++     G   +A ++++ M       P+  T+ ++I
Sbjct: 663 RKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLI 714



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPW 173
           IDP+  AFS L K Y  AG  +    +  +M+  GV+PN++ Y  ++    + G  K+  
Sbjct: 632 IDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 691

Query: 174 QVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           QV   YK+M    GLSPN  TY +L+  +G A+       + ++M+ K +
Sbjct: 692 QV---YKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNV 738



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVK 153
            RAG  E A  + ++ R  K+ + PN   ++ +I  + +AG     + VY++M  I G+ 
Sbjct: 647 ARAGEPEKAKQILNQMR--KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLS 704

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
           PN+ TY  L+   G AK+PW+ + + K+M    + P   T
Sbjct: 705 PNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKT 744



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           RG+  EA ++FN ++E G +P+L   T+L+    + +    ++  ++++ + G+ PD   
Sbjct: 332 RGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTIL 391

Query: 335 CGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
              ++N  +++   ++  K+ E +++S  K
Sbjct: 392 FNAIINASSESGNLDQAMKIFEKMKESGCK 421


>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 650

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 90/161 (55%), Gaps = 1/161 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           L+++ + +    D   ++ LI  +G  G  D  +N++EE++    KP++I+YN+L++ +G
Sbjct: 464 LFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLG 523

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +     +    +KEM + GL+P+  TY++L+  +G+    E   S++ EM  KG Q ++ 
Sbjct: 524 KNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIV 583

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
            YN LL      G T EA +++  MK  +   PDS T++ +
Sbjct: 584 TYNILLDCLEKSGRTAEAVDLYTKMK-QQGLTPDSITYTVL 623



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 12/228 (5%)

Query: 120 DPNAFSTLIKLYGTAG---NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           DP  ++ +I +   +     FD   ++ + M    V  N+ T N L+   G  +      
Sbjct: 132 DPFLYNRIILILSRSNLSDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGDTEDLQMCL 191

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 235
            + K+    GL  N  TY  LL+AY R+R       VY E++  G +L +  YN LL A+
Sbjct: 192 RLVKKW---GLKMNSFTYKCLLQAYLRSRDSSKAFDVYCEIRRGGHKLDIFAYNMLLDAL 248

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
             D    ++A ++FEDMK   +C+ D ++++ MI      GK  EA  +FNEM+  G   
Sbjct: 249 AKD----EKACQVFEDMKK-RHCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMITEGLTL 303

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
           N+    +L+Q   K +  D  ++  +R+ E G  P++     +LN++ 
Sbjct: 304 NVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLV 351



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 109/213 (51%), Gaps = 7/213 (3%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           +++ ++++    AG     + +  ++   GV  + + YN +   +G+ K+   +  ++++
Sbjct: 408 DSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEK 467

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M  +G SP+  TY  L+ ++GR    ++ ++++ E++    +  +  YN+L+      G 
Sbjct: 468 MKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGD 527

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE---AMFNEMLEAGFEPNLF 298
            DEA   F++M+  +   PD  T+S   T+  C GK    E   ++F EML  G +PN+ 
Sbjct: 528 VDEAHVRFKEMQ-EKGLNPDVVTYS---TLMECFGKTERVEMAYSLFEEMLVKGCQPNIV 583

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
               L+ C  K+ RT + V    ++ + G+TPD
Sbjct: 584 TYNILLDCLEKSGRTAEAVDLYTKMKQQGLTPD 616



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 1/205 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG    A  +  +   +    D   ++T+    G         +++E+MK  G  P++ T
Sbjct: 420 AGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFT 479

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           YN L+ + GR     +   I++E+  +   P+  +Y SL+   G+    ++    ++EM+
Sbjct: 480 YNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ 539

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           EKG+   V  Y+TL+         + A+ +FE+M   + CQP+  T++ ++      G+ 
Sbjct: 540 EKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEM-LVKGCQPNIVTYNILLDCLEKSGRT 598

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSL 303
           +EA  ++ +M + G  P+    T L
Sbjct: 599 AEAVDLYTKMKQQGLTPDSITYTVL 623



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 33/286 (11%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G  + A GL++    E   ++   ++TL+++       D  + V+  M   G +PN  
Sbjct: 282 RIGKYDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEY 341

Query: 158 TYN---NLLDTMGRAKRPWQVKTIYKEMTDNGL---------------------SPNW-- 191
           TY+   NLL   G+  R   +  I K     G+                        W  
Sbjct: 342 TYSLVLNLLVAEGQLVRLDGIVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSF 401

Query: 192 ------NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
                 ++Y S+L +   A    + + +  ++ EKG+     +YNT+ +    +      
Sbjct: 402 PVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHI 461

Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
            ++FE MK  +   PD +T++ +I+     G+V EA  +F E+  +  +P++    SLI 
Sbjct: 462 HDLFEKMKK-DGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLIN 520

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
           C GK    D+       + E G+ PD      L+    +T + E+ 
Sbjct: 521 CLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMA 566



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 107/232 (46%), Gaps = 10/232 (4%)

Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
           E A  +++  +    R D  +++ +I+  G  G +D  + ++ EM   G+  N++ YN L
Sbjct: 252 EKACQVFEDMKKRHCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTL 311

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKE 219
           +  + + K   +   ++  M + G  PN  TY+   +LL A G+    +  + + +    
Sbjct: 312 MQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEGQLVRLDGIVEISKRYMT 371

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           +G      +Y+ L+   + +G+  EA  +F DM S    + +  ++ SM+      GK  
Sbjct: 372 QG------IYSYLVRTLSKLGHVSEAHRLFCDMWSFP-VKGERDSYMSMLESLCGAGKTI 424

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA  M +++ E G   +  +  ++    GK ++   +     ++ + G +PD
Sbjct: 425 EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPD 476



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 69/135 (51%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V+ A  +++       + D  ++++LI   G  G+ D     ++EM+  G+ P+++
Sbjct: 489 RVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVV 548

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L++  G+ +R     ++++EM   G  PN  TY  LL    ++    + + +Y +M
Sbjct: 549 TYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDLYTKM 608

Query: 218 KEKGMQLSVTLYNTL 232
           K++G+      Y  L
Sbjct: 609 KQQGLTPDSITYTVL 623



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 4/112 (3%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G+V+ A   +   + +    D   +STL++ +G     +   +++EEM   G +PN++
Sbjct: 524 KNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIV 583

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR----AYGRAR 205
           TYN LLD + ++ R  +   +Y +M   GL+P+  TY  L R    ++G++R
Sbjct: 584 TYNILLDCLEKSGRTAEAVDLYTKMKQQGLTPDSITYTVLERLQSGSHGKSR 635


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 106/274 (38%), Gaps = 34/274 (12%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GN++ A  +    + E+ R     F  +I  +  AG     L +++ M+  G  P + T+
Sbjct: 553 GNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTF 612

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+  +   ++  +   I  EM   G+SP+ +TY +++  Y            + +M+ 
Sbjct: 613 NALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRN 672

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS------------------------ 255
           +G+QL V  Y  LL  C   G    A  +  +M +                         
Sbjct: 673 EGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWE 732

Query: 256 ----------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
                     E  QPD  T++S I  C   G +  A     EM  AG +PN+   T+LI 
Sbjct: 733 AADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIH 792

Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
            +  A   +  +     L   G+ PD     CL+
Sbjct: 793 GWANASLPEKALSCFEELKLAGLKPDKAVYHCLM 826



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 124/271 (45%), Gaps = 7/271 (2%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
            K G++  +  W      R + L    Y        +A N++ A  L      E      
Sbjct: 375 AKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEEEGIDAPL 434

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + + T++  Y    N + CL V++ +K  G  P++ITY  L++   +  +  +   + K 
Sbjct: 435 DIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKM 494

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   G+  N  TY+ L+  + + +   +  +V+ ++ + G++  V LYN ++     +G 
Sbjct: 495 MKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGN 554

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            D A  + ++M+  E C+P S TF  +I   +  G++  A  +F+ M  +G  P +    
Sbjct: 555 MDRAIHMVKEMQ-KERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFN 613

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
           +L+    + ++ +  V  L+ +   G++PD+
Sbjct: 614 ALVLGLVEKRKMEKAVEILDEMALAGVSPDE 644



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 5/229 (2%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           AF +++    +  + D   ++ +IK +   GN D  +++ +EM+    +P   T+  ++ 
Sbjct: 523 AFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIH 582

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
              RA    +   I+  M  +G  P  +T+ +L+      R  E  + +  EM   G+  
Sbjct: 583 GFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSP 642

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
               Y T++   A +G T +AFE F  M+ +E  Q D +T+ +++  C   G++  A A+
Sbjct: 643 DEHTYTTIMHGYAALGDTGKAFEYFTKMR-NEGLQLDVFTYEALLKACCKSGRMQSALAV 701

Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTD--DVVRALNRLPELGITPD 331
             EM       N FV   LI   G A+R D  +    + ++ + G+ PD
Sbjct: 702 TREMNAQKIPRNTFVYNILID--GWARRGDIWEAADLMQQMNQEGVQPD 748



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 7/219 (3%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G+   AF  + + RNE  ++D   +  L+K    +G     L V  EM A  +  N   Y
Sbjct: 658 GDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVY 717

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N L+D   R    W+   + ++M   G+ P+ +TY S + A  +A           EM+ 
Sbjct: 718 NILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEA 777

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
            G++ +V  Y TL+   A+    ++A   FE++K +   +PD   +  ++T    R  V+
Sbjct: 778 AGVKPNVKTYTTLIHGWANASLPEKALSCFEELKLA-GLKPDKAVYHCLMTSLLSRATVA 836

Query: 280 EAE------AMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
           EA       ++  EM+E     ++       +C  K +R
Sbjct: 837 EAYIYSGILSICREMIEFELTVDMGTAVYWSKCLRKIER 875



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 106/225 (47%), Gaps = 10/225 (4%)

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
           N+   ++ +E +K    KP+   +  ++    R     + +  ++ M   G+ P+ + Y 
Sbjct: 278 NWQAVVSAFERIK----KPSRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYT 333

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           SL+ AY   R  E+ LS  R+M E+G+++S+  Y+ ++   A  G  + A   F+  K  
Sbjct: 334 SLIHAYAVGRDMEEALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAK-E 392

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
            +   +++ + ++I        +  AEA+  EM E G +  L +  +++  Y   +  + 
Sbjct: 393 RHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEK 452

Query: 316 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
            +    RL E G  P     GCL+N+ T+     +GK+ + +E S
Sbjct: 453 CLIVFKRLKECGFAPSVITYGCLINMYTK-----IGKVSKALEVS 492



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 116/278 (41%), Gaps = 44/278 (15%)

Query: 95  YDTRAGNVEMAFGLYD--RARNEKWRIDP--NAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150
           Y  R G++  A   ++  RAR     IDP  + +++LI  Y    + +  L+   +M   
Sbjct: 303 YYARRGDMHRARQTFESMRARG----IDPSSHVYTSLIHAYAVGRDMEEALSCVRKMNEE 358

Query: 151 GVKPNMITYNNLLDTMGR-----AKRPW------------------------------QV 175
           G++ +++TY+ ++    +     A   W                              + 
Sbjct: 359 GIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQACNMDRA 418

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + + +EM + G+    + Y +++  Y   R  E  L V++ +KE G   SV  Y  L+ M
Sbjct: 419 EALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINM 478

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
              +G   +A E+ + MKS    + +  T+S +I         + A A+F ++++ G +P
Sbjct: 479 YTKIGKVSKALEVSKMMKSV-GIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKP 537

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           ++ +  ++I+ +      D  +  +  + +    P  R
Sbjct: 538 DVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSR 575



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 68/149 (45%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G ++ A  +      +K   +   ++ LI  +   G+     ++ ++M   GV+P++ 
Sbjct: 691 KSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIH 750

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY + ++   +A    +     +EM   G+ PN  TY +L+  +  A   E  LS + E+
Sbjct: 751 TYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEEL 810

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
           K  G++    +Y+ L+          EA+
Sbjct: 811 KLAGLKPDKAVYHCLMTSLLSRATVAEAY 839


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 2/218 (0%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           + R+ PN   F+ L+  + + G     L     M+  G+ P+ +TYN LL+   R     
Sbjct: 201 ELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLG 260

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           + + +   M  +G++P   TY +L+ A+ R  + +    V   M   G +  +  YN L 
Sbjct: 261 EARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLA 320

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
                 G  DEAF + ++M+      PD  T+++++  C      S+A  +  EM + G 
Sbjct: 321 MGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGV 380

Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +P L     +++   K  + ++ +  L ++ E G+ PD
Sbjct: 381 KPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPD 418



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 157/368 (42%), Gaps = 47/368 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +  A  L  R + +        ++TL+  +   G       V E M A G +P++ 
Sbjct: 255 RKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLR 314

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN L   + +A +  +   +  EM   G + P+  TY +L+ A  + R   D L +  E
Sbjct: 315 TYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++KG++ ++  +N ++      G  +EA    E + + E   PD  T++++I      G
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKI-AEEGLAPDVITYNTLIDAYCKAG 433

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V++A  + +EM+  G + + F L +++    K +R +D    L+  P+ G  PD+   G
Sbjct: 434 NVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYG 493

Query: 337 CLL-------------------------------NVMT------QTPKEELGKLVECVEK 359
            ++                               N +       +  KE + KL E VEK
Sbjct: 494 TVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEK 553

Query: 360 S----NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID-LCVNLNLL 414
                 +    ++    +E D+E  F+     + NS   DV    CN L++ LC++   L
Sbjct: 554 GLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDV--VTCNTLMNGLCLH-GKL 610

Query: 415 ENACKLLE 422
           + A KL E
Sbjct: 611 DKALKLFE 618



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 97/208 (46%), Gaps = 1/208 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  ++ T++  Y    N +  L ++++M    + P++ TYN L+  + R +R  +     
Sbjct: 488 DEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKL 547

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            E  + GL P+  TY  ++ AY +    E+    + +M E   +  V   NTL+      
Sbjct: 548 NEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLH 607

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  D+A ++FE     +  + D  T++++I      G V  A   F++M   G +P+ F 
Sbjct: 608 GKLDKALKLFESW-VEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFT 666

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELG 327
              ++    +A R+++    L++L + G
Sbjct: 667 YNVVLSALSEAGRSEEAHNMLHKLADSG 694



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 4/184 (2%)

Query: 151 GVKPNMITYNNLLDTMGRAKR--PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
           GV+P++   N +L  + R+    P     +++ + +  L PN  T+  L+  +       
Sbjct: 166 GVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLA 225

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           D L+    M+  G+      YNTLL      G   EA  +   MK  +   P   T++++
Sbjct: 226 DALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKR-DGIAPTQPTYNTL 284

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           ++  +  G + +A  +   M   GFEP+L     L     +A + D+  R  + +  LG 
Sbjct: 285 VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGT 344

Query: 329 T-PD 331
             PD
Sbjct: 345 ALPD 348


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 1/245 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           TR  +      L  +      + D   F+ +I     +GN D  + ++E+MK  G KP  
Sbjct: 365 TRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTA 424

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
            T+N L+   G+  +  +   +   M  D  L PN  T   L++A+   R  E+  ++  
Sbjct: 425 STFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVY 484

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M+  G++  V  +NTL    A +G T  A ++          +P+  T  +++      
Sbjct: 485 KMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE 544

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           GK+ EA   F  M E G  PNLFV  SLI+ +      D V   ++ + E G+ PD    
Sbjct: 545 GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTF 604

Query: 336 GCLLN 340
             L+N
Sbjct: 605 STLMN 609



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 38/272 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG----------------- 139
           + +GN++ A  ++++ +    +   + F+TLIK YG  G  +                  
Sbjct: 400 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPN 459

Query: 140 -------------------CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIY 179
                                N+  +M++ GVKP+++T+N L     R       +  I 
Sbjct: 460 DRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMII 519

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             M  N + PN  T  +++  Y      E+ L  +  MKE G+  ++ ++N+L+    ++
Sbjct: 520 PRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNI 579

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              D   E+  D+      +PD  TFS+++   S  G +   E ++ +MLE G +P++  
Sbjct: 580 NDMDGVGEVV-DLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHA 638

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            + L + Y +A   +   + LN++ + G+ P+
Sbjct: 639 FSILAKGYARAGEPEKAEQILNQMRKFGVRPN 670



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 90/171 (52%), Gaps = 2/171 (1%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L++ +    RP +  +I+  + + G  P+  TY +L+ A  R ++    LS+  ++++ G
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++    L+N ++   ++ G  D+A +IFE MK S  C+P + TF+++I      GK+ E+
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKES-GCKPTASTFNTLIKGYGKIGKLEES 443

Query: 282 EAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + + ML +   +PN      L+Q +   ++ ++    + ++   G+ PD
Sbjct: 444 SRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPD 494



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 100/202 (49%), Gaps = 5/202 (2%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
           G KP++ITY  L+  + R K    + ++  ++  NGL P+   + +++ A   +   +  
Sbjct: 349 GHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 408

Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
           + ++ +MKE G + + + +NTL+     +G  +E+  + + M   E  QP+  T + ++ 
Sbjct: 409 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQ 468

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELG 327
               + K+ EA  +  +M   G +P++    +L + Y +   T   +D++  + R+    
Sbjct: 469 AWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNK 526

Query: 328 ITPDDRFCGCLLNVMTQTPKEE 349
           + P+ R CG ++N   +  K E
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKME 548



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 88/172 (51%), Gaps = 4/172 (2%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G +E A   + R +  +  + PN   F++LIK +    + DG   V + M+  GVKP+++
Sbjct: 545 GKMEEALRFFYRMK--ELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T++ L++         + + IY +M + G+ P+ + ++ L + Y RA   E    +  +M
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
           ++ G++ +V +Y  +++     G   +A ++++ M       P+  T+ ++I
Sbjct: 663 RKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLI 714



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPW 173
           IDP+  AFS L K Y  AG  +    +  +M+  GV+PN++ Y  ++    + G  K+  
Sbjct: 632 IDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 691

Query: 174 QVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           QV   YK+M    GLSPN  TY +L+  +G A+       + ++M+ K +
Sbjct: 692 QV---YKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNV 738



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVK 153
            RAG  E A  + ++ R  K+ + PN   ++ +I  + +AG     + VY++M  I G+ 
Sbjct: 647 ARAGEPEKAEQILNQMR--KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLS 704

Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
           PN+ TY  L+   G AK+PW+ + + K+M    + P   T
Sbjct: 705 PNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKT 744



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
           RG+  EA ++FN ++E G +P+L   T+L+    + +    ++  ++++ + G+ PD   
Sbjct: 332 RGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTIL 391

Query: 335 CGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
              ++N  +++   ++  K+ E +++S  K
Sbjct: 392 FNAIINASSESGNLDQAMKIFEKMKESGCK 421


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 111/232 (47%), Gaps = 5/232 (2%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +V  AF LY    ++   I PN   +S LI  +   G     ++++ ++    +KP+  T
Sbjct: 92  HVNDAFDLYSEMVSKG--ISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYT 149

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           +N L+D   + ++  + KT++  M   G+ P+  TY SL+  Y   +      S++  M 
Sbjct: 150 FNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMA 209

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + G+   +  YN L+     +   D+A  +F +M   +N  P+  T++S+I   S  G++
Sbjct: 210 QGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEM-HCKNIIPNVVTYNSLIDGLSKSGRI 268

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           S A  + ++M + G  PN+    S+I    K  + D  +  + +  + GI P
Sbjct: 269 SYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQP 320



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 105/233 (45%), Gaps = 3/233 (1%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  AF  +D+     + +D  ++ TLI      G     L++ + +    V+ N + Y
Sbjct: 21  GQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMY 80

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++  M + K       +Y EM   G+SPN  TY++L+  +      +D + ++ ++  
Sbjct: 81  NTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIIL 140

Query: 220 KGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
           + ++     +N L+   C D     E   +F  M   +   PD  T++S++       +V
Sbjct: 141 ENIKPDGYTFNILVDGFCKD-RKMKEGKTVFA-MMMKQGIIPDVVTYNSLVDGYRLVKEV 198

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + A+++FN M + G  P++     LI  + K ++ D  +   N +    I P+
Sbjct: 199 NTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPN 251



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 121/268 (45%), Gaps = 9/268 (3%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAF 124
           G   +++++ +        L + SY T      + G    A  L  R   +  +++   +
Sbjct: 21  GQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMY 80

Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
           +T+I       + +   ++Y EM + G+ PN++TY+ L+       +      ++ ++  
Sbjct: 81  NTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIIL 140

Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
             + P+  T+  L+  + + R  ++  +V+  M ++G+   V  YN+L+     V   + 
Sbjct: 141 ENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNT 200

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           A  IF  M +     PD  +++ +I   C  + KV +A  +FNEM      PN+    SL
Sbjct: 201 AKSIFNTM-AQGGVNPDIRSYNILINGFCKIK-KVDKAMNLFNEMHCKNIIPNVVTYNSL 258

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           I    K+ R    ++ ++++ + G+ P+
Sbjct: 259 IDGLSKSGRISYALQLVDQMHDRGVPPN 286



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++ LI  +      D  +N++ EM    + PN++TYN+L+D + ++ R      + 
Sbjct: 216 DIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLV 275

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            +M D G+ PN  TY S++ A  +    +  +++  + K++G+Q S+  Y  L+      
Sbjct: 276 DQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKG 335

Query: 240 GYTDEAFEIFEDM 252
           G   +A  IFED+
Sbjct: 336 GRLKDARNIFEDL 348



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
           +G  PN IT N L+  +    +  Q    + ++   G   +  +Y +L+  +G  + GE 
Sbjct: 1   MGYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLI--HGLCKVGET 58

Query: 210 --TLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
              L + + +  K +QL+  +YNT++  MC D  + ++AF+++ +M  S+   P+  T+S
Sbjct: 59  RAALDLLQRVDGKLVQLNAVMYNTVIYGMCKD-KHVNDAFDLYSEM-VSKGISPNVVTYS 116

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
           ++I+     GK+ +A  +FN+++    +P+ +    L+  + K ++  +       + + 
Sbjct: 117 ALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQ 176

Query: 327 GITPD 331
           GI PD
Sbjct: 177 GIIPD 181


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 1/230 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V  AF LY    ++    D   +S LI  +   G  +  + ++ +M +  + P++ T++ 
Sbjct: 212 VNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSI 271

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+D   +  R  + K +   M   G+ P+  TY SL+  Y   +      S++  M + G
Sbjct: 272 LVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGG 331

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           +  +V  YN ++     +   DEA  +F++M   +N  PD  T++S+I      GK+S A
Sbjct: 332 VTANVQSYNIMINGFCKIKKVDEAMNLFKEMH-CKNIIPDVVTYNSLIDGLCKSGKISYA 390

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             + +EM + G   +     S++    K  + D  +  L ++ + GI PD
Sbjct: 391 LKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 440



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 105/216 (48%), Gaps = 1/216 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  A GL+++  +E+   D   FS L+  +   G      NV   M   G+KP+++TY
Sbjct: 245 GKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTY 304

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
            +L+D     K+  + K+I+  M   G++ N  +Y  ++  + + +  ++ +++++EM  
Sbjct: 305 CSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHC 364

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           K +   V  YN+L+      G    A ++ ++M        D  T++S++       +V 
Sbjct: 365 KNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMH-DRGVPHDKITYNSILDALCKNHQVD 423

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           +A A+  +M + G +P+++  T LI    K  R  D
Sbjct: 424 KAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKD 459



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 112/260 (43%), Gaps = 1/260 (0%)

Query: 72  SSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY 131
           SS    + +NP  P     K      +    + A  L+          D   F+ LI  +
Sbjct: 42  SSFNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCF 101

Query: 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
              G+     +V+  +   G +PN IT   L+  +    +  Q    + ++   G   N 
Sbjct: 102 SQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNK 161

Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
             Y +L+    +       L + R +  K +Q +V +YNT++     V   +EAF+++ +
Sbjct: 162 VCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 221

Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
           M  S+   PD  T+S++I+     GK+++A  +FN+M+     P+++  + L+  + K  
Sbjct: 222 M-VSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEG 280

Query: 312 RTDDVVRALNRLPELGITPD 331
           R  +    L  + + GI PD
Sbjct: 281 RVKEAKNVLAMMMKQGIKPD 300



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/253 (19%), Positives = 116/253 (45%), Gaps = 1/253 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G+   +F ++     + +  +    +TLIK     G     L+ ++++ A+G   N 
Sbjct: 102 SQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNK 161

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + Y  L++ + +  +      + + +    + PN   Y +++ +  + +   +   +Y E
Sbjct: 162 VCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 221

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  KG+   V  Y+ L++    +G  ++A  +F  M  SE   PD +TFS ++      G
Sbjct: 222 MVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKM-ISEEINPDVYTFSILVDGFCKEG 280

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           +V EA+ +   M++ G +P++    SL+  Y   ++ +      N + + G+T + +   
Sbjct: 281 RVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYN 340

Query: 337 CLLNVMTQTPKEE 349
            ++N   +  K +
Sbjct: 341 IMINGFCKIKKVD 353



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 104/232 (44%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +  A   +D+     + ++   + TLI      G     L +   +    V+PN++ Y
Sbjct: 140 GQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMY 199

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++D+M + K   +   +Y EM   G+SP+  TY++L+  +       D + ++ +M  
Sbjct: 200 NTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMIS 259

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           + +   V  ++ L+      G   EA  +   M   +  +PD  T+ S++       +V+
Sbjct: 260 EEINPDVYTFSILVDGFCKEGRVKEAKNVLA-MMMKQGIKPDVVTYCSLMDGYCLVKQVN 318

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +A+++FN M + G   N+     +I  + K ++ D+ +     +    I PD
Sbjct: 319 KAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPD 370



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 112/237 (47%), Gaps = 3/237 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A  +      +  + D   + +L+  Y      +   +++  M   GV  N+ 
Sbjct: 278 KEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQ 337

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN +++   + K+  +   ++KEM    + P+  TY SL+    ++      L +  EM
Sbjct: 338 SYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEM 397

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            ++G+      YN++L A+C +    D+A  +   MK  E  QPD +T++ +I      G
Sbjct: 398 HDRGVPHDKITYNSILDALCKN-HQVDKAIALLTKMK-DEGIQPDMYTYTILIDGLCKGG 455

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           ++ +A+ +F ++L  G+   ++  T +IQ +      D  +  L+++ + G  P+ +
Sbjct: 456 RLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAK 512



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 1/192 (0%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           V+ A  L+     +    D   +++LI     +G     L + +EM   GV  + ITYN+
Sbjct: 352 VDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNS 411

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           +LD + +  +  +   +  +M D G+ P+  TY  L+    +    +D  +++ ++  KG
Sbjct: 412 ILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKG 471

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
             ++V  Y  ++    D    D+A  +   M+ +  C P++ T+  +I     + +   A
Sbjct: 472 YNITVYTYTVMIQGFCDNDLFDKALALLSKMEDN-GCIPNAKTYEIIILSLFEKDENDMA 530

Query: 282 EAMFNEMLEAGF 293
           E +  EM+  G 
Sbjct: 531 EKLLREMIARGL 542



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/236 (17%), Positives = 95/236 (40%), Gaps = 46/236 (19%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           +  +  I   P +  +  +L ++ +        ++++EM  NG++ +  T+  L+  + +
Sbjct: 44  FNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQ 103

Query: 204 ARYGEDTLSVYREMKEK-----------------------------------GMQLSVTL 228
             +   + SV+  + +K                                   G  L+   
Sbjct: 104 LGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVC 163

Query: 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNE 287
           Y TL+     VG T  A ++   +   +  QP+   ++++I ++C  +  V+EA  +++E
Sbjct: 164 YGTLINGLCKVGQTSAALQLLRRV-DGKLVQPNVVMYNTIIDSMCKVK-LVNEAFDLYSE 221

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
           M+  G  P++   ++LI  +    + +D +   N++    I PD        D FC
Sbjct: 222 MVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFC 277


>gi|449445824|ref|XP_004140672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g36240-like [Cucumis sativus]
 gi|449487417|ref|XP_004157616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g36240-like [Cucumis sativus]
          Length = 486

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 1/209 (0%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            ++ LI  +  +G FD  L  Y  M +  VKP++ T+N L+    R  +  Q   ++KEM
Sbjct: 186 VYNILINGFVKSGRFDKALGFYSRMLSDRVKPDVYTFNILISGYCRNSQFVQALELFKEM 245

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
            + G SPN  ++ +L++ + R R  ED +++  EM E G + S      L+   +  G  
Sbjct: 246 REKGCSPNVISFNTLIKGFFRERKFEDGIALAYEMIELGCKFSSVTCEILMDGLSREGKI 305

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EA EI  D  S +   P  + +  ++ +   +G   +A  + +E+   G  P+    T+
Sbjct: 306 FEACEILLDF-SRKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVPSFITSTT 364

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           LI    K  R +D +    R+ E+G+ PD
Sbjct: 365 LIDGLRKEGRVNDAMNVTERMLEVGMIPD 393



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 114/295 (38%), Gaps = 41/295 (13%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            ++G  + A G Y R  +++ + D   F+ LI  Y     F   L +++EM+  G  PN+
Sbjct: 195 VKSGRFDKALGFYSRMLSDRVKPDVYTFNILISGYCRNSQFVQALELFKEMREKGCSPNV 254

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNG------------------------------ 186
           I++N L+    R ++      +  EM + G                              
Sbjct: 255 ISFNTLIKGFFRERKFEDGIALAYEMIELGCKFSSVTCEILMDGLSREGKIFEACEILLD 314

Query: 187 ------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
                 L  +++ Y  +    G+   G+  + V  E+  +G   S     TL+      G
Sbjct: 315 FSRKQVLPKDYDYYGVVEMLCGKGNAGK-AMEVVDELWMEGNVPSFITSTTLIDGLRKEG 373

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
             ++A  + E M       PDS TF+S++  +C+ R K  EA  +       GFEP+   
Sbjct: 374 RVNDAMNVTERMLEV-GMIPDSVTFNSLLQDLCNVR-KTVEANKLRLLASSKGFEPDNKT 431

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
             +L+  Y       +  R +  + +    PD      L++ +  T K+   KLV
Sbjct: 432 YYTLVSGYTMEGNKVEGQRLVEEMLDKEFIPDIATYNRLMDRLLNTHKKR-SKLV 485


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 16/241 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNV-YEEMKAIGVKP 154
           R G V+ A  L ++  N      PN   F+TLI  Y + G  D    V +E M ++G  P
Sbjct: 352 RMGKVDEARMLLNKVPN------PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGP 405

Query: 155 NMITYNNLLDTMGRAKRPWQV--KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           ++ TYN L+  +G  K+ + V  + +  EM   G  PN  TY  L+  + +    E+  +
Sbjct: 406 DIFTYNTLI--LGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARN 463

Query: 213 VYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
           V  EM  KG+ L+   YN L+ A+C D    D A  +F DM SS+ C+PD +TF+S+I  
Sbjct: 464 VLDEMSGKGLALNAVGYNCLISALCKDEKVQD-ALNMFGDM-SSKGCKPDIFTFNSLIFG 521

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                K  EA  ++ +ML  G   N     +LI  + +     + ++ +N +   G   D
Sbjct: 522 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLD 581

Query: 332 D 332
           D
Sbjct: 582 D 582



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 106/234 (45%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  + D    +   ++   ++ LI            LN++ +M + G KP++ 
Sbjct: 454 KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 513

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N+L+  + +  +  +   +Y++M   G+  N  TY +L+ A+ R    ++ L +  +M
Sbjct: 514 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 573

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G  L    YN L+      G  ++   +FEDM  S+   P++ + + +I      G 
Sbjct: 574 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMM-SKGLNPNNISCNILINGLCRTGN 632

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  A     +M+  G  P++    SLI    K  R  + +   ++L   GI PD
Sbjct: 633 IQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 686



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 3/232 (1%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +PN   ++ LI  +   G  +   NV +EM   G+  N + YN L+  + + ++      
Sbjct: 439 EPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALN 498

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++ +M+  G  P+  T+ SL+    +    E+ L +Y++M  +G+  +   YNTL+    
Sbjct: 499 MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL 558

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G   EA ++  DM     C  D  T++ +I      G + +  A+F +M+  G  PN 
Sbjct: 559 RRGAMQEALKLVNDM-LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNN 617

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
                LI    +       +  L  +   G+TPD      L+N + +T + +
Sbjct: 618 ISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQ 669



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 1/226 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI      G       +  EM+  G +PN+ITY  L+D   +  R  + + + 
Sbjct: 406 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 465

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM+  GL+ N   Y  L+ A  +    +D L+++ +M  KG +  +  +N+L+     V
Sbjct: 466 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKV 525

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              +EA  +++DM   E    ++ T++++I     RG + EA  + N+ML  G   +   
Sbjct: 526 NKFEEALGLYQDM-LLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 584

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
              LI+   +A   +  +     +   G+ P++  C  L+N + +T
Sbjct: 585 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRT 630



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 6/231 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA  + TLI      G  +  L + EEM  +G  P++ T+N+ +  + +  R  +   +
Sbjct: 268 PNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKL 327

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
              M   G +PN  TY  L+  +G  R G+  +   R +  K    +V L+NTL+     
Sbjct: 328 VDRMLLRGFTPNSFTYGVLM--HGLCRMGK--VDEARMLLNKVPNPNVVLFNTLINGYVS 383

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEA  +  +   S  C PD +T++++I     +G +  A  + NEM   G EPN+ 
Sbjct: 384 RGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVI 443

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             T LI  + K  R ++    L+ +   G+  +     CL++ + +  K +
Sbjct: 444 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQ 494



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +    E A GLY     E    +   ++TLI  +   G     L +  +M   G   + I
Sbjct: 524 KVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDI 583

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + RA    +   ++++M   GL+PN  +   L+    R    +  L   R+M
Sbjct: 584 TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM 643

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+   +  YN+L+      G   EA  +F+ ++    C PD+ T++++I+     G 
Sbjct: 644 IHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGIC-PDAITYNTLISWHCKEGM 702

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +A  + +  +++GF PN
Sbjct: 703 FDDAHLLLSRGVDSGFIPN 721



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 2/227 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMI 157
           AG  +    L  + + E      + F  ++K YG AG       +  +M+ +   +P   
Sbjct: 142 AGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFR 201

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN +LD +     P  V  ++ EM   G+SP   T+  +++A       +   ++ ++M
Sbjct: 202 SYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDM 261

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   +  +Y TL+   + VG  +E      +      C PD  TF+  I       +
Sbjct: 262 TRHGCVPNAIVYQTLIHALSKVGRVNEV-LKLLEEMLLMGCIPDVNTFNDAIHGLCKMLR 320

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           + EA  + + ML  GF PN F    L+    +  + D+    LN++P
Sbjct: 321 IHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP 367



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 9/261 (3%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + +  LI   G AG F     +  +MK  G+      +  ++   GRA  P Q   +  +
Sbjct: 130 DVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLD 189

Query: 182 MTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           M       P + +Y  +L         +   +V+ EM  KG+  +V  +  ++     V 
Sbjct: 190 MRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVN 249

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             D A  + +DM +   C P++  + ++I   S  G+V+E   +  EML  G  P++   
Sbjct: 250 EVDSACALLKDM-TRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTF 308

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
              I    K  R  +  + ++R+   G TP+    G L++ + +  K +E   L+  V  
Sbjct: 309 NDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN 368

Query: 360 SNSKL------GYVVKLLLEE 374
            N  L      GYV +  L+E
Sbjct: 369 PNVVLFNTLINGYVSRGRLDE 389



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/149 (18%), Positives = 60/149 (40%)

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           T  G    ++ Y  L+   G A   + T ++  +MK++G+    +L+  ++      G  
Sbjct: 121 TQKGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLP 180

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +A  +  DM+   +C+P   +++ ++ +            +F EML  G  P ++    
Sbjct: 181 GQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGV 240

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +++        D     L  +   G  P+
Sbjct: 241 VMKALCLVNEVDSACALLKDMTRHGCVPN 269


>gi|359487102|ref|XP_002274044.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 390

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 111/229 (48%), Gaps = 4/229 (1%)

Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
           +++ +   G +  C   +EEM   GV  ++ +Y+  +D   ++ +PW+   +YKEM   G
Sbjct: 143 ILRGWFKMGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKG 202

Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
           +  +   Y +++RA G +   + ++ V+REMKE G + +V  YNT++ +  + G   EA+
Sbjct: 203 IRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCENGRIREAY 262

Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
            +F+ M+  +   P+  T+        C  K  +    F+ M+ +G  P +     L++ 
Sbjct: 263 GVFDQMR-EKGYAPNVITYHCFF---GCIEKPKQILRTFDRMINSGVRPRMDTYVMLMKK 318

Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 355
           +G+      V     ++ E G +PD      L++ + Q    +L +  E
Sbjct: 319 FGRWGFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYE 367



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 92/195 (47%), Gaps = 4/195 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G    A  LY   + +  R+D  A++T+I+  G +   D  + V+ EMK +G +PN++
Sbjct: 184 KSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVV 243

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++  +    R  +   ++ +M + G +PN  TY      +G     +  L  +  M
Sbjct: 244 TYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYHCF---FGCIEKPKQILRTFDRM 300

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++  +  Y  L+      G+    F +++ M+  + C PD+  ++++I     +G 
Sbjct: 301 INSGVRPRMDTYVMLMKKFGRWGFLRPVFIVWKKME-EQGCSPDACAYNALIDALVQKGM 359

Query: 278 VSEAEAMFNEMLEAG 292
           V  A     EML  G
Sbjct: 360 VDLARKYEEEMLAKG 374


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 1/208 (0%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
           N   +M   G++P+  TYN ++    +  +      I K+    G  P+  TY SL+   
Sbjct: 279 NYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGV 338

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            +    +  L+++ E   KG++ S+ LYNTL+   +  G   +A ++  DM S E   PD
Sbjct: 339 CQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDM-SKEGMSPD 397

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
            WT++ +I      G VS+A  + N  +  G+ P++F   +LI  Y K  + D+ +  L+
Sbjct: 398 IWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILD 457

Query: 322 RLPELGITPDDRFCGCLLNVMTQTPKEE 349
            +   G+TPD      +LN + +  K E
Sbjct: 458 SMWSHGVTPDVITYNSILNGLCKAAKPE 485



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 115/269 (42%), Gaps = 35/269 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V  A  L + A  + +  D   F+TLI  Y      D  + + + M + GV P++I
Sbjct: 410 KMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVI 469

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN++L+ + +A +P  V   +K + + G  PN  TY  L+ +  +AR   + L +  E+
Sbjct: 470 TYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEI 529

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS---------------------- 255
           + +G+      + T+++   + G  DEA+++F  M+                        
Sbjct: 530 RNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLD 589

Query: 256 -------------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                        + C PDS+T+  MI      G V+       + +E GF P+L     
Sbjct: 590 MDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGR 649

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +I C     R  + V  ++ +   G+ P+
Sbjct: 650 VINCLCVQHRVHEAVGIVHLMVRTGVVPE 678



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 111/254 (43%), Gaps = 13/254 (5%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           R G V+ A  +++R   + +  +P+ FS   ++ +    G F+    VY  MK  G+ P+
Sbjct: 88  RKGKVQEAVDVFERM--DFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPD 145

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           + T+   + +  R KRP     +   M   G   N   Y +++  +    Y  +   ++ 
Sbjct: 146 VCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFN 205

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           +M   G+   +  +N L+ +    G+  E  ++   +  +  C P+ +TF+  I     +
Sbjct: 206 KMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVC-PNLFTFNIFIQGLCRK 264

Query: 276 G-------KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           G       KV EAE   ++M+  G EP+ F   ++I  Y K  +  D  R L      G 
Sbjct: 265 GVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGF 324

Query: 329 TPDD-RFCGCLLNV 341
            PD+  +C  ++ V
Sbjct: 325 VPDEFTYCSLIIGV 338



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 101/217 (46%), Gaps = 8/217 (3%)

Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
            + + ++ YG  G     ++V+E M     +P++ +YN +++ +       Q   +Y  M
Sbjct: 78  VYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRM 137

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
              G++P+  T+   ++++ R +     L +   M  +G +L+  +Y T+++   +  Y 
Sbjct: 138 KHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQ 197

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            EA+E+F  M       P   TF+ ++ I   +G + E E + N++L+ G  PNLF    
Sbjct: 198 VEAYELFNKMLRL-GIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNI 256

Query: 303 LIQCY-------GKAQRTDDVVRALNRLPELGITPDD 332
            IQ         G   +  +    L+++   G+ PDD
Sbjct: 257 FIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDD 293



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 102/235 (43%), Gaps = 1/235 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G ++ A  +   A+ + +  D   + +LI      G+ D  L ++EE    G+KP++
Sbjct: 304 SKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSI 363

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           + YN L+  + +     +   +  +M+  G+SP+  TY  ++    +     D  ++   
Sbjct: 364 VLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNA 423

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
              KG    +  +NTL+         D A  I + M  S    PD  T++S++       
Sbjct: 424 AIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSM-WSHGVTPDVITYNSILNGLCKAA 482

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           K  +    F  ++E G  PN+     LI+   KA++  + +  L  +   G+ PD
Sbjct: 483 KPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPD 537



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 8/184 (4%)

Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM---TDNGLSPNWNTYASLLRAYGRARYG 207
           G K   +TY  +++ +G       ++ +  EM    DN L      Y S +R YGR    
Sbjct: 35  GFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEG--VYVSAMRNYGRKGKV 92

Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267
           ++ + V+  M     + S+  YN ++ +  + GY ++A +++  MK  E   PD  TF+ 
Sbjct: 93  QEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMK-HEGIAPDVCTFTI 151

Query: 268 MITICSCRGKVSEAEA-MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            I    CR K   A   + N M   G E N  V  ++I  + +     +     N++  L
Sbjct: 152 RIK-SFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRL 210

Query: 327 GITP 330
           GI P
Sbjct: 211 GIFP 214


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 114/224 (50%), Gaps = 5/224 (2%)

Query: 98  RAGNVEMAFGL---YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           RA N+ +A       +R  N   ++    F++LI+ YG AG F   + +++ MK +G+ P
Sbjct: 112 RARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISP 171

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSV 213
           +++T+N+LL  + +  R      ++ EM    G++P+  T+ +L+  + +    ++   +
Sbjct: 172 SVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRI 231

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITIC 272
           +++M+       V  YNT++      G    A  +   M K + +  P+  ++++++   
Sbjct: 232 FKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGY 291

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
             + ++ EA  +F++ML  G +PN     +LI+   +A R D++
Sbjct: 292 CMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEI 335



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 6/204 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   MA  L+D  R   + + P++  F+TLI  +      D    ++++M+     P+
Sbjct: 185 KRGRTGMAHDLFDEMR-RTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPD 243

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSV 213
           ++TYN ++D + RA +      +   M      + PN  +Y +L+R Y   +  ++ + V
Sbjct: 244 VVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLV 303

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSWTFSSMITIC 272
           + +M  +G++ +   YNTL+   ++    DE  +I      +     PD+ TF+ +I   
Sbjct: 304 FHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAH 363

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPN 296
              G +  A  +F EML     P+
Sbjct: 364 CDAGHLDAAMKVFQEMLNMKLHPD 387



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG V++A  +      +   + PN  +++TL++ Y      D  + V+ +M + G+KPN
Sbjct: 256 RAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPN 315

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSV 213
            +TYN L+  +  A R  ++K I     D     +P+  T+  L++A+  A + +  + V
Sbjct: 316 AVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKV 375

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------NCQPDSWTFSS 267
           ++EM    +      Y+ L+         D A  +F ++   E       C+P +  ++ 
Sbjct: 376 FQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNP 435

Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFE 294
           M       GK  +AE +F ++++ G +
Sbjct: 436 MFEYLCANGKTKQAEKVFRQLMKRGVQ 462


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 3/261 (1%)

Query: 71  GSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130
           G +P   + + P +P  S +            E+A  ++ R        D  +++TLI  
Sbjct: 16  GHAPMRLLMLPPSTPTTSLID--VLPAECTGPELALAVFGRLLRTGLGPDVCSYNTLIDG 73

Query: 131 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190
           +   G  D    ++ +M    V P+++TYN+L+D + + K   + + + ++M D G+ PN
Sbjct: 74  FSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPN 133

Query: 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250
             TY SL+  Y  A   ++++ V++EM   G+   V   N+ +          EA +IF+
Sbjct: 134 NKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFD 193

Query: 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310
            M   +  +P+  ++S+++   +  G  +   ++ N M+  G  PN      LI  Y + 
Sbjct: 194 SM-VLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARC 252

Query: 311 QRTDDVVRALNRLPELGITPD 331
              D  +     +   G+ PD
Sbjct: 253 GMMDKAMLIFEDMQNKGMIPD 273



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 133/302 (44%), Gaps = 29/302 (9%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN  ++STL+  Y   G F    ++   M + G+ PN   +N L++   R     +   I
Sbjct: 202 PNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLI 261

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           +++M + G+ P+  T+A+++ +  R    +D L  +  M + G+  S  +Y  L+  C +
Sbjct: 262 FEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCN 321

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   +A E+  +M + +   P    FSS+I      G+V+E + + + M++ G  PN+ 
Sbjct: 322 HGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVV 381

Query: 299 VLTSLIQCYG--------------------------KAQRTDDVVRALNRLPELGITPDD 332
              SL++ Y                            A+RT    +  + + E G T   
Sbjct: 382 TFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVSI 441

Query: 333 RFCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 391
           +  G +L  + +    +E   L+E +   N K   +   ++    ++   ++EA ELF +
Sbjct: 442 QTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAA 501

Query: 392 IS 393
           IS
Sbjct: 502 IS 503



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 115/317 (36%), Gaps = 65/317 (20%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G ++ A  +++  +N+    D   F+T+I      G  D  L+ +  M  IGV P+  
Sbjct: 251 RCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEA 310

Query: 158 TYNNLL-----------------DTMGRAKRPWQVK-------TIYKE------------ 181
            Y  L+                 + M +   P  VK        ++KE            
Sbjct: 311 VYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDL 370

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTL--------------------------SVYR 215
           M   G  PN  T+ SL+  Y      E+ L                           ++ 
Sbjct: 371 MVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKKMFH 430

Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           EM E G  +S+  Y  +L        TDEA  + E +  + N + D  TF+ +I+     
Sbjct: 431 EMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKL-FAMNVKFDIITFNIVISAMLKV 489

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G+  EA+ +F  +   G  P +     +I    K +  ++       + + G  PD R  
Sbjct: 490 GRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLL 549

Query: 336 GCLLNVMTQTPKEELGK 352
             ++ ++ +  K E+ K
Sbjct: 550 NHIVRMLLK--KAEVAK 564


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 15/216 (6%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA  ++ LI+ +   G     ++V+ +MK+ G+ PN  T N LL  +    +      +
Sbjct: 23  PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKL 82

Query: 179 YKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           ++EM      P   ++  LLR +   GRA      +  ++EMK  G++  +  Y+ LL+ 
Sbjct: 83  FREMQAGPFLPTSASHNILLRGFFMAGRA------IEFFKEMKASGVEPDLESYHILLSA 136

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
            +D G   EA  +F  M     C PD  T++ ++      G+  EA+++  E+L+AG+EP
Sbjct: 137 LSDSGRMAEAHALFSAM----TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEP 192

Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           N+F  + +I CY K  + ++      ++ E    P+
Sbjct: 193 NVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPN 228



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 104/202 (51%), Gaps = 4/202 (1%)

Query: 149 AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
           A+   P+++TYN L+D   +  + ++ +++ KE+   G  PN  TY+ ++  Y +    E
Sbjct: 152 AMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVE 211

Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
           +   V+ +M E     +   +NTL+A     G  ++A ++F +M+    C+    T++++
Sbjct: 212 EAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKI-GCKATIVTYNTL 270

Query: 269 I-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           I ++C  RG V  A  +FN++  AG  P +    SLIQ  G ++R +D +R L  +   G
Sbjct: 271 IDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ--GFSERANDGLRLLCHMHAEG 328

Query: 328 ITPDDRFCGCLLNVMTQTPKEE 349
             PD     CL++ +    + E
Sbjct: 329 CKPDVITYNCLISGLCSANRVE 350



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 32/213 (15%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-WQVKT 177
           PNA  F+TLI  +  AG  +  + ++ EM+ IG K  ++TYN L+D++ + +   +    
Sbjct: 227 PNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVD 286

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++ ++   GL+P   TY SL++  G +    D L +   M  +G +  V  YN L++   
Sbjct: 287 LFNKLEGAGLTPTIVTYNSLIQ--GFSERANDGLRLLCHMHAEGCKPDVITYNCLISGLC 344

Query: 238 DVGYTDEAFEIFEDMKSSENC---------------------------QPDSWTFSSMIT 270
                ++A  +F  M  + N                             PD  TF+++I 
Sbjct: 345 SANRVEDAQRLFNGMACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAPDMTTFNTIIL 404

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
                G + +A  +  +ML+ GF PN +   +L
Sbjct: 405 AFCKAGAMHDAREVMKDMLKHGFYPNTYTTYAL 437


>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 426

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 120/266 (45%), Gaps = 30/266 (11%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++   R  K  +D    + +I +YG  G       ++  M+ +GV+PN+++YN LL 
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLR 192

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
               A+   +   +++ M    +  N  TY S++  YG+    E   ++ +EM+ +G++ 
Sbjct: 193 VYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEP 252

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----------------------------- 255
           +   Y+T++++   VG  D A  +FE ++SS                             
Sbjct: 253 NAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLL 312

Query: 256 -ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
            E   PD+    + I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++  
Sbjct: 313 HELKTPDNIPRDTAIQILAGSGRMEEATWVFRQAIDAGEVKDITVFEQMIDLFSKYRKYS 372

Query: 315 DVVRALNRLPELGITPDDRFCGCLLN 340
           +VV   +++  LG  PD      +LN
Sbjct: 373 NVVEVFDKMRGLGYFPDSNVIALVLN 398



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 107 GLYDRA-------RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A        +++ R D   +S LI+L     ++   ++++  +K  G+ P+++ Y
Sbjct: 23  GLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDLVVY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N++++  G+AK   + +++  EM   G+ P+  +Y +LL  Y   +   + LSV+ EM+E
Sbjct: 83  NSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVENKKFIEALSVFAEMRE 142

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
               L +T  N ++ +   +G   EA ++F  M+     +P+  ++++++ + S      
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKL-GVEPNVVSYNTLLRVYSDAELFG 201

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA  +F  M     E N+    S++  YGK    +     +  +   GI P+
Sbjct: 202 EAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPN 253



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V+ ++  Y+NL++   +     +  +I+
Sbjct: 8   DKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G++P+   Y S++  +G+A+   +  S+  EM+  G+      Y TLL M  + 
Sbjct: 68  SRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFIEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ Y  A+
Sbjct: 187 YNTLLRVYSDAE 198



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +D LS  ++M+   ++  + LY+ L+ +   +    
Sbjct: 2   ERALSPDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   ++SMI +        EA ++  EM   G  P+    T+L
Sbjct: 62  KAISIFSRLKRS-GITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 37/192 (19%)

Query: 67  HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
           +GKT    K+   +     R  +    +Y T      + G ++ A  L+++ R+    ID
Sbjct: 229 YGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEID 288

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMK-----------------------------AI- 150
              + T+I  Y  AG       +  E+K                             AI 
Sbjct: 289 QVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIQILAGSGRMEEATWVFRQAID 348

Query: 151 -GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
            G   ++  +  ++D   + ++   V  ++ +M   G  P+ N  A +L AYG+    E 
Sbjct: 349 AGEVKDITVFEQMIDLFSKYRKYSNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHDFEK 408

Query: 210 TLSVYREMKEKG 221
              VY EM+++G
Sbjct: 409 ANDVYLEMQDEG 420


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 4/217 (1%)

Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
           R+ PN   F+ L+  + + G     L+    M+  G+ P+ +TYN LL+   R     + 
Sbjct: 199 RLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 258

Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
           + +   M  +G++P   TY +L+ AY R  + +    V   M   G +  +  YN L A 
Sbjct: 259 RALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAG 318

Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC-SCRGKVSEAEAMFNEMLEAGFE 294
               G  DEAF + ++M+      PD  T++++   C  CR   S+A  +  EM E G +
Sbjct: 319 LCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCS-SDALRLLEEMREKGVK 377

Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
             L     +I+   K    +  +  LN++ + G+ PD
Sbjct: 378 ATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPD 414



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 157/369 (42%), Gaps = 49/369 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G +  A  L  R + +        ++TL+  Y   G       V E M A G +P++ 
Sbjct: 251 RKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLW 310

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TYN L   + +A +  +   +  EM   G L P+  TY +L  A  + R   D L +  E
Sbjct: 311 TYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEE 370

Query: 217 MKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
           M+EKG++ ++  +N ++  +C D G  + A      M + +   PD  T++++I      
Sbjct: 371 MREKGVKATLVTHNIVIKGLCKD-GELEGALGCLNKM-ADDGLAPDVITYNTLIHAHCKA 428

Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
           G +++A  + +EM+  G + + F L +++    K +R ++    L   P+ G  PD+   
Sbjct: 429 GNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSY 488

Query: 336 GCLLNVMTQ-------------------TP------------------KEELGKLVECVE 358
           G ++    +                   TP                  KE + KL E +E
Sbjct: 489 GTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELME 548

Query: 359 KS----NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID-LCVNLNL 413
           K     ++    ++    +E D+E  F+     + NS   DV    CN L++ LC+N   
Sbjct: 549 KGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDV--VTCNTLMNGLCLN-GK 605

Query: 414 LENACKLLE 422
           L+ A KL E
Sbjct: 606 LDKALKLFE 614



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 122/270 (45%), Gaps = 9/270 (3%)

Query: 65  YPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNV------EMAFGLYDRARNEKWR 118
           + H K G+  K+Y  ++    R  KL   + +T   N+      E A GL        + 
Sbjct: 423 HAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFM 482

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
            D  ++ T++  Y    N +  L +++EM    + P++ TYN L+  + R  R  +    
Sbjct: 483 PDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDK 542

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCA 237
             E+ + GL P+  TY  ++ AY +    E+    + +M E   +  V   NTL+  +C 
Sbjct: 543 LNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCL 602

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           + G  D+A ++FE     +  + D  T++++I      G V  A   F +M   G +P+ 
Sbjct: 603 N-GKLDKALKLFESW-VEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDA 660

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
           F    ++    +A RT++    L++L E G
Sbjct: 661 FTYNVVLSALSEAGRTEEAQNMLHKLAESG 690



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 2/189 (1%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           L+ +  + A+ + PN  T+N L+ T           +    M   GLSP+  TY +LL A
Sbjct: 189 LDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNA 248

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
           + R     +  ++   MK+ G+  +   YNTL++  A +G+  +A ++ E M ++   +P
Sbjct: 249 HCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAM-TANGFEP 307

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRA 319
           D WT++ +       GKV EA  + +EM   G   P++    +L     K + + D +R 
Sbjct: 308 DLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRL 367

Query: 320 LNRLPELGI 328
           L  + E G+
Sbjct: 368 LEEMREKGV 376


>gi|387219093|gb|AFJ69255.1| hypothetical protein NGATSA_2006000, partial [Nannochloropsis
           gaditana CCMP526]
          Length = 479

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 120 DPNAFSTLIKLYGTA-GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           D   +S L++ Y T  G+      V E M   GV PN  TYN L++   +A      + +
Sbjct: 99  DVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEGYVKAGEMDWAEDV 158

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            + M   GL+P    Y  L+ AY R R       +   MK++G+Q +V ++ TL+   A 
Sbjct: 159 LERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVFTTLMNAYAK 218

Query: 239 VGYTDEAFEIF--------EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
            G  + A  +         E+   S++C+P+  T+S+++ + +  G  + AE +   M  
Sbjct: 219 RGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGLAAGAEGVLTRMTA 278

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           AG+ PN+   T+L+  Y +A   +     L R+   G++P+
Sbjct: 279 AGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPN 319



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 2/190 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           +KPN ITYN+LL     A      + + K M   GLSP+  T+ +L+ A+   R      
Sbjct: 26  LKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAE 85

Query: 212 SVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
            +   M+E G+   V  Y+ LL       G   +A E+ E M + +   P+S+T++ +I 
Sbjct: 86  KMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERM-ARDGVAPNSYTYNYLIE 144

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G++  AE +   M   G  P       L+  Y + +      + L+R+ + G+  
Sbjct: 145 GYVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQA 204

Query: 331 DDRFCGCLLN 340
           + +    L+N
Sbjct: 205 NVQVFTTLMN 214



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 10/202 (4%)

Query: 114 NEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
            E   + PNA  +++L+  Y  AG+  G   V + M   G+ P+  T+N L+      + 
Sbjct: 21  GEGGNLKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARRE 80

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAY----GRARYGEDTLSVYREMKEKGMQLSVT 227
               + +   M ++G+  +  TY+ LL+ Y    G     E+ L     M   G+  +  
Sbjct: 81  VRAAEKMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLE---RMARDGVAPNSY 137

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YN L+      G  D A ++ E M++     P S  +  ++   + R     AE + + 
Sbjct: 138 TYNYLIEGYVKAGEMDWAEDVLERMRTV-GLAPTSMNYCVLMDAYTRRRDARGAEKILDR 196

Query: 288 MLEAGFEPNLFVLTSLIQCYGK 309
           M + G + N+ V T+L+  Y K
Sbjct: 197 MKKEGVQANVQVFTTLMNAYAK 218



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 23/158 (14%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +PN   +STL+ +Y  AG   G   V   M A G  PN+IT+  L+    RA  P   + 
Sbjct: 247 EPNVHTYSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAEL 306

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + K M   G+SPN  TY +LL A  R    E       E++E+  +  + +Y+T+     
Sbjct: 307 VLKRMEAAGVSPNVLTYNTLLSATSRMGLREG------EVEERRAKRVLQVYDTMRRSAG 360

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
             G  ++A              PD  T++ ++T C  R
Sbjct: 361 KGGGLEKA--------------PDEATYTVLLT-CLLR 383



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 16/117 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A G+  R     W  +   F+TL+  Y  AG+ +G   V + M+A GV PN++
Sbjct: 262 RAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNVL 321

Query: 158 TYNNLLDT---MG---------RAKRPWQVKTIYKEMTDNG----LSPNWNTYASLL 198
           TYN LL     MG         RAKR  QV    +     G     +P+  TY  LL
Sbjct: 322 TYNTLLSATSRMGLREGEVEERRAKRVLQVYDTMRRSAGKGGGLEKAPDEATYTVLL 378


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 16/241 (6%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNV-YEEMKAIGVKP 154
           R G V+ A  L ++  N      PN   F+TLI  Y + G  D    V +E M ++G  P
Sbjct: 334 RMGKVDEARMLLNKVPN------PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGP 387

Query: 155 NMITYNNLLDTMGRAKRPWQV--KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           ++ TYN L+  +G  K+ + V  + +  EM   G  PN  TY  L+  + +    E+  +
Sbjct: 388 DIFTYNTLI--LGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARN 445

Query: 213 VYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271
           V  EM  KG+ L+   YN L+ A+C D    D A  +F DM SS+ C+PD +TF+S+I  
Sbjct: 446 VLDEMSGKGLALNAVGYNCLISALCKDEKVQD-ALNMFGDM-SSKGCKPDIFTFNSLIFG 503

Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
                K  EA  ++ +ML  G   N     +LI  + +     + ++ +N +   G   D
Sbjct: 504 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLD 563

Query: 332 D 332
           D
Sbjct: 564 D 564



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 106/234 (45%), Gaps = 1/234 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  + D    +   ++   ++ LI            LN++ +M + G KP++ 
Sbjct: 436 KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 495

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T+N+L+  + +  +  +   +Y++M   G+  N  TY +L+ A+ R    ++ L +  +M
Sbjct: 496 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 555

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G  L    YN L+      G  ++   +FEDM  S+   P++ + + +I      G 
Sbjct: 556 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMM-SKGLNPNNISCNILINGLCRTGN 614

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  A     +M+  G  P++    SLI    K  R  + +   ++L   GI PD
Sbjct: 615 IQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 668



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 3/232 (1%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +PN   ++ LI  +   G  +   NV +EM   G+  N + YN L+  + + ++      
Sbjct: 421 EPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALN 480

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           ++ +M+  G  P+  T+ SL+    +    E+ L +Y++M  +G+  +   YNTL+    
Sbjct: 481 MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL 540

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G   EA ++  DM     C  D  T++ +I      G + +  A+F +M+  G  PN 
Sbjct: 541 RRGAMQEALKLVNDM-LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNN 599

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
                LI    +       +  L  +   G+TPD      L+N + +T + +
Sbjct: 600 ISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQ 651



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 1/226 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++TLI      G       +  EM+  G +PN+ITY  L+D   +  R  + + + 
Sbjct: 388 DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 447

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM+  GL+ N   Y  L+ A  +    +D L+++ +M  KG +  +  +N+L+     V
Sbjct: 448 DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKV 507

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
              +EA  +++DM   E    ++ T++++I     RG + EA  + N+ML  G   +   
Sbjct: 508 NKFEEALGLYQDM-LLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 566

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345
              LI+   +A   +  +     +   G+ P++  C  L+N + +T
Sbjct: 567 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRT 612



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 1/199 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +    E A GLY     E    +   ++TLI  +   G     L +  +M   G   + I
Sbjct: 506 KVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDI 565

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN L+  + RA    +   ++++M   GL+PN  +   L+    R    +  L   R+M
Sbjct: 566 TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM 625

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
             +G+   +  YN+L+      G   EA  +F+ ++    C PD+ T++++I+     G 
Sbjct: 626 IHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGIC-PDAITYNTLISWHCKEGM 684

Query: 278 VSEAEAMFNEMLEAGFEPN 296
             +A  + +  +++GF PN
Sbjct: 685 FDDAHLLLSRGVDSGFIPN 703



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 6/231 (2%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PNA  + TLI      G  +  L + EEM  +G  P++ T+N+ +  + +  R  +   +
Sbjct: 250 PNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKL 309

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
              M   G +PN  TY  L+  +G  R G+  +   R +  K    +V L+NTL+     
Sbjct: 310 VDRMLLRGFTPNSFTYGVLM--HGLCRMGK--VDEARMLLNKVPNPNVVLFNTLINGYVS 365

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G  DEA  +  +   S  C PD +T++++I     +G +  A  + NEM   G EPN+ 
Sbjct: 366 RGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVI 425

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             T LI  + K  R ++    L+ +   G+  +     CL++ + +  K +
Sbjct: 426 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQ 476



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 2/227 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMI 157
           AG  +    L  + + E      + F  ++K YG AG       +  +M+ +   +P   
Sbjct: 124 AGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFR 183

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           +YN +LD +     P  V  ++ EM   G+SP   T+  +++A       +   ++ ++M
Sbjct: 184 SYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDM 243

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G   +  +Y TL+     VG  +E      +      C PD  TF+  I       +
Sbjct: 244 TRHGCVPNAIVYQTLIHALXKVGRVNEV-LKLLEEMLLMGCIPDVNTFNDAIHGLCKMLR 302

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
           + EA  + + ML  GF PN F    L+    +  + D+    LN++P
Sbjct: 303 IHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP 349



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 9/261 (3%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           + +  LI   G AG F     +  +MK  G+      +  ++   GRA  P Q   +  +
Sbjct: 112 DVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLD 171

Query: 182 MTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
           M       P + +Y  +L         +   +V+ EM  KG+  +V  +  ++     V 
Sbjct: 172 MRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVN 231

Query: 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 300
             D A  + +DM +   C P++  + ++I      G+V+E   +  EML  G  P++   
Sbjct: 232 EVDSACALLKDM-TRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTF 290

Query: 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359
              I    K  R  +  + ++R+   G TP+    G L++ + +  K +E   L+  V  
Sbjct: 291 NDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN 350

Query: 360 SNSKL------GYVVKLLLEE 374
            N  L      GYV +  L+E
Sbjct: 351 PNVVLFNTLINGYVSRGRLDE 371



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/149 (17%), Positives = 59/149 (39%)

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
           T  G    ++ Y  L+   G A   +   ++  +MK++G+    +L+  ++      G  
Sbjct: 103 TQKGYCHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLP 162

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
            +A  +  DM+   +C+P   +++ ++ +            +F EML  G  P ++    
Sbjct: 163 GQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGV 222

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
           +++        D     L  +   G  P+
Sbjct: 223 VMKALCLVNEVDSACALLKDMTRHGCVPN 251


>gi|222613030|gb|EEE51162.1| hypothetical protein OsJ_31934 [Oryza sativa Japonica Group]
          Length = 404

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 106/207 (51%), Gaps = 4/207 (1%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
           +V +++KA G+ P++ TYN+L+D     G A   + V  + KEM + G+SP   T+  L+
Sbjct: 147 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 206

Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
             Y +       + V+ EMK++G+  SV  YN+L++     G  +E  ++ E+M+     
Sbjct: 207 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL-GL 265

Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            P+  TF  ++     +G +++A    + M E   EP++ +   LI  Y +  + +D + 
Sbjct: 266 SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMA 325

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQT 345
               + + GI+P+     CL+   +++
Sbjct: 326 VKEAMAKKGISPNVTTYNCLITGFSRS 352



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 6/200 (3%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           I P A  F  LI  Y    N    + V+EEMK  G+  +++TYN+L+  +    +  +  
Sbjct: 195 ISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGV 254

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM D GLSPN  T+  +L+ + +     D       M E+ ++  V +YN L+ + 
Sbjct: 255 KLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVY 314

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
             +G  ++A  + E M + +   P+  T++ +IT  S  G    A  + +EM E G E +
Sbjct: 315 RRLGKMEDAMAVKEAM-AKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEAD 373

Query: 297 LF---VLTSLIQCYGKAQRT 313
           +    VL   + C G+   T
Sbjct: 374 VVTYNVLIGALCCKGEESMT 393



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 1/179 (0%)

Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
           N   A  +++  + +        +++LI    + G  +  + + EEM+ +G+ PN IT+ 
Sbjct: 214 NTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFG 273

Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
            +L    +             MT+  + P+   Y  L+  Y R    ED ++V   M +K
Sbjct: 274 CVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKK 333

Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           G+  +VT YN L+   +  G    A  + ++MK  +  + D  T++ +I    C+G+ S
Sbjct: 334 GISPNVTTYNCLITGFSRSGDWRSASGLLDEMK-EKGIEADVVTYNVLIGALCCKGEES 391



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G VE    L +    E   + PN   F  ++K +   G      +  + M    V+P+++
Sbjct: 248 GKVEEGVKLMEEM--EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVV 305

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+D   R  +      + + M   G+SPN  TY  L+  + R+        +  EM
Sbjct: 306 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 365

Query: 218 KEKGMQLSVTLYNTLL-AMCA----DVGYTDEAFEI 248
           KEKG++  V  YN L+ A+C      + +  +AF I
Sbjct: 366 KEKGIEADVVTYNVLIGALCCKGEESMTFIKQAFAI 401


>gi|413953500|gb|AFW86149.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
          Length = 1039

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 1/220 (0%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           +G +  A  +YDR  +         F+T+I +YG  G  D  + ++   + +G+  +   
Sbjct: 759 SGKLHSAVSIYDRMVSSGVSQSMQTFNTMISVYGKGGKLDKAVEMFAAAQELGLPIDEKM 818

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y N+L   G+A R  +   ++K M ++G+ P   ++ S++ AY  +    +  SV++EM+
Sbjct: 819 YTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLFSEAKSVFQEMQ 878

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK-SSENCQPDSWTFSSMITICSCRGK 277
           + G       Y  L+    +     EA E    M  SS N  P    FS +I      G+
Sbjct: 879 DCGHAPDSFSYLALIRAYTEAKLYTEAEEAIRTMTLSSSNTTPSCPHFSHLILAFLKEGR 938

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
           V EA  ++ +M+E G  P+L    ++++ Y      DD +
Sbjct: 939 VGEARRIYGQMMEVGVAPDLACCRAMMRVYVDRGLVDDGI 978



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 111/230 (48%), Gaps = 3/230 (1%)

Query: 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
            ++ ++D   ++T IK    +G     +++Y+ M + GV  +M T+N ++   G+  +  
Sbjct: 739 RDEVQLDTALYNTFIKSMLESGKLHSAVSIYDRMVSSGVSQSMQTFNTMISVYGKGGKLD 798

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   ++    + GL  +   Y ++L  YG+A   ++   +++ MKE G++     +N+++
Sbjct: 799 KAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMI 858

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML--EA 291
              A  G   EA  +F++M+   +  PDS+++ ++I   +     +EAE     M    +
Sbjct: 859 NAYATSGLFSEAKSVFQEMQDCGHA-PDSFSYLALIRAYTEAKLYTEAEEAIRTMTLSSS 917

Query: 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
              P+    + LI  + K  R  +  R   ++ E+G+ PD   C  ++ V
Sbjct: 918 NTTPSCPHFSHLILAFLKEGRVGEARRIYGQMMEVGVAPDLACCRAMMRV 967



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 111/236 (47%), Gaps = 1/236 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V++A   +          D  A  TL+  Y   G  +  +  Y  ++  G+ P + 
Sbjct: 185 RVGKVKLAEETFLEMLQVGCEPDAVACGTLLCAYARWGRHEDMMLFYSAVRGRGLVPPIS 244

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN ++ ++ + K   +V  ++K+M + G  PN  TY  ++ +  +    E+ + ++ EM
Sbjct: 245 VYNYMISSLQKQKLHGKVIHVWKQMLEAGAPPNQFTYTVVIGSLVKEDLLEEAVDLFGEM 304

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           + +        Y+ L++  +  G  ++A  +FE+MK  +   P ++T +S++ +      
Sbjct: 305 RRRRFVPEEATYSLLISASSRHGKGEQALRLFEEMK-GQGIAPSNYTCASLLALHCKNED 363

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
             +A A+F++M  +   P+  +   LI+ YGK    ++  +    + + G+  D++
Sbjct: 364 YPKALALFSDMESSKVIPDEVIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQ 419



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 2/234 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G+ + A  +YD+      + D +A +TLI  YG A   +    +++   A       
Sbjct: 618 AREGSTDEARFIYDQLTELGTKPDDSAVATLIVQYGQAKQLERAQELFDSASA-SFPDGA 676

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +  N ++D   +  R      ++ EM D G   N  T + L+    +    ++  ++   
Sbjct: 677 LVCNAMVDAFCKCGRAEDAYHLFMEMADQGSYRNAVTASILVTHLTKHGKFQEVENIMHG 736

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
                +QL   LYNT +    + G    A  I++ M SS   Q    TF++MI++    G
Sbjct: 737 CFRDEVQLDTALYNTFIKSMLESGKLHSAVSIYDRMVSSGVSQ-SMQTFNTMISVYGKGG 795

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           K+ +A  MF    E G   +  + T+++  YGKA R  +      R+ E GI P
Sbjct: 796 KLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRP 849



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 1/187 (0%)

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
           +P+++ Y  LL   GR  +    +  + EM   G  P+     +LL AY R    ED + 
Sbjct: 170 EPSVVAYTVLLRLYGRVGKVKLAEETFLEMLQVGCEPDAVACGTLLCAYARWGRHEDMML 229

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
            Y  ++ +G+   +++YN +++         +   +++ M  +    P+ +T++ +I   
Sbjct: 230 FYSAVRGRGLVPPISVYNYMISSLQKQKLHGKVIHVWKQMLEA-GAPPNQFTYTVVIGSL 288

Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
                + EA  +F EM    F P     + LI    +  + +  +R    +   GI P +
Sbjct: 289 VKEDLLEEAVDLFGEMRRRRFVPEEATYSLLISASSRHGKGEQALRLFEEMKGQGIAPSN 348

Query: 333 RFCGCLL 339
             C  LL
Sbjct: 349 YTCASLL 355



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 102/237 (43%), Gaps = 10/237 (4%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           ++ S LI      G+ D    +Y+++  +G KP+      L+   G+AK+  + + ++  
Sbjct: 608 SSVSLLISRLAREGSTDEARFIYDQLTELGTKPDDSAVATLIVQYGQAKQLERAQELFDS 667

Query: 182 MT----DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
            +    D  L  N     +++ A+ +    ED   ++ EM ++G   +    + L+    
Sbjct: 668 ASASFPDGALVCN-----AMVDAFCKCGRAEDAYHLFMEMADQGSYRNAVTASILVTHLT 722

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G   E   I       E  Q D+  +++ I      GK+  A ++++ M+ +G   ++
Sbjct: 723 KHGKFQEVENIMHGCFRDE-VQLDTALYNTFIKSMLESGKLHSAVSIYDRMVSSGVSQSM 781

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
               ++I  YGK  + D  V       ELG+  D++    +L++  +  + +   L+
Sbjct: 782 QTFNTMISVYGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLM 838



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 108/271 (39%), Gaps = 34/271 (12%)

Query: 106 FGLYDRARNEKWRI-------DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
            GLY+ AR     I       D   +  + +++  AG+ D  L V E MK  GVKP+  +
Sbjct: 396 LGLYEEARQTFGEIEKAGLLNDEQTYVAMAQVHLNAGDCDRALEVLESMKTRGVKPSRFS 455

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTD--NGLSPNWNTYASLLRAY---GRARYGEDTLSV 213
           Y+ LL      +     +  ++ ++   +GL P+      +LR Y   GR       +SV
Sbjct: 456 YSALLRCHVAKEDVVAAEDTFRALSQSQHGL-PDAFCCNDMLRLYMRLGRLDKARALVSV 514

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
              ++E G QL   L  T++      G  ++A ++ ED++   N +P       ++    
Sbjct: 515 L--LREDGFQLDENLSTTVMEFYCKSGMVEDAEKLLEDIQ--RNRKPVKVPTLLLLVEMY 570

Query: 274 CRGK---------------VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
            R +                S A    N +L+      L  ++ LI    +   TD+   
Sbjct: 571 ARNRPSVVLEERSSSRALGSSAASVALNSLLD--MPGGLSSVSLLISRLAREGSTDEARF 628

Query: 319 ALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
             ++L ELG  PDD     L+    Q  + E
Sbjct: 629 IYDQLTELGTKPDDSAVATLIVQYGQAKQLE 659


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 44/282 (15%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  L +  + + +  D   + TLI  +   GN D    +++EM   G+  N++
Sbjct: 226 KDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVV 285

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLS-- 212
           TY+ L+  + R  +  +  T+   M ++G+ P+  TY  L+      GRA +  D L+  
Sbjct: 286 TYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLM 345

Query: 213 ------------------------------VYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                                         + R M EKG +  V  YNTL+    D G  
Sbjct: 346 VEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKV 405

Query: 243 DEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
           DEA ++F  M  +ENC +P+ +TF+ +I      G++++A  +  +M++ G   NL    
Sbjct: 406 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 465

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
            L+    KA +  + +    ++ +LG  P+        D FC
Sbjct: 466 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC 507



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 128/286 (44%), Gaps = 38/286 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G V+ A  L++   + +  ++PN F+   LI      G     + ++ +M   G   N++
Sbjct: 403 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 462

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL    +A +  +   ++K++ D G  PN  TY+ L+  + + R       ++ EM
Sbjct: 463 TYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM 522

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD---------------- 261
           +  G+  ++  YNTL+A     G  ++A  +F++M ++ NC+PD                
Sbjct: 523 RTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNA-NCEPDIISFNTMIDGTLKAGD 581

Query: 262 -------------------SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                              + TFS++I   S  G++ EA++    M+ +GF P+  V  S
Sbjct: 582 FQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDS 641

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           L++       T +++  L+++   G   D +    +L  +  + +E
Sbjct: 642 LLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQE 687



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 112/257 (43%), Gaps = 3/257 (1%)

Query: 76  SYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 135
           +++ V P     S L E   D  A   ++ FG+        + ++    + ++K     G
Sbjct: 101 THVDVLPSFGSLSALIECFAD--AQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNG 158

Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
                + +  EM    V P++++YN L++ + +AK+  +   +  EM   G  PN  T  
Sbjct: 159 GVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCT 218

Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
           +L+    +    ++ + +   MK+KG    V LY TL++   + G  D   E+F++M   
Sbjct: 219 TLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEM-LG 277

Query: 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
           +    +  T+S ++      G+  EA  + N M E G  P++   T LI    K  R   
Sbjct: 278 KGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATH 337

Query: 316 VVRALNRLPELGITPDD 332
            +  LN + E G  P +
Sbjct: 338 AMDLLNLMVEKGEEPSN 354



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 105/272 (38%), Gaps = 5/272 (1%)

Query: 60  SQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRI 119
           +Q PQ   G  G   K    VN        +  K    R G V  A GL      +    
Sbjct: 122 AQKPQLGFGVVGLVLKRGFTVNV---FIMNIVLKGL-CRNGGVFEAMGLIREMGRKSVSP 177

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D  +++TLI     A      + +  EM+A G  PN +T   L+D + +  R  +   + 
Sbjct: 178 DIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELL 237

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + M   G   +   Y +L+  +      +    ++ EM  KG+  +V  Y+ L+     +
Sbjct: 238 EAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRL 297

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   EA  +   M +     PD  T++ +I      G+ + A  + N M+E G EP+   
Sbjct: 298 GQWKEANTVLNAM-AEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVT 356

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              L+    K     D  + L  + E G   D
Sbjct: 357 YNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 388



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 107/234 (45%), Gaps = 17/234 (7%)

Query: 121 PNA-FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           PN+ F+  + L+ +A +F+             + P+  T N L+D + R++      ++Y
Sbjct: 51  PNSQFTEAVSLFHSALDFN-------------LLPSWATCNFLVDALARSRNYGLAFSVY 97

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
           + MT   + P++ + ++L+  +  A+  +    V   + ++G  ++V + N +L      
Sbjct: 98  RRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRN 157

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
           G   EA  +  +M   ++  PD  +++++I  +C  + K+ EA  +  EM  AG  PN  
Sbjct: 158 GGVFEAMGLIREM-GRKSVSPDIVSYNTLINGLCKAK-KLKEAVGLLLEMEAAGCFPNSV 215

Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
             T+L+    K  R D+ +  L  + + G   D    G L++        + GK
Sbjct: 216 TCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 269



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 1/147 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++E A  L+    N     D  +F+T+I     AG+F     +  +M  +G++P+ +
Sbjct: 543 KEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDAL 602

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T++ L++ + +     + K+  + M  +G +P+   Y SLL+         + +++  +M
Sbjct: 603 TFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQM 662

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTD 243
             KG  L   + +T+L  +C  +   D
Sbjct: 663 AAKGTVLDRKIVSTILTCLCHSIQEVD 689


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 147/334 (44%), Gaps = 30/334 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++  A  +++  R    R    +F+TLI     + N D    + + M+   + P++ 
Sbjct: 235 KEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVF 294

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY+ L+  + +  R    + ++ EM   GL PN  T+ +L+    R+R  +  ++ Y +M
Sbjct: 295 TYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQM 354

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
              G++  + +YNTLL     VG  ++A ++ ++M+     +PD  T++++I      G 
Sbjct: 355 LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMV-GMKPDKITYTTLIDGYCKEGD 413

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
           +  A  +   M E G   +    T+LI  + +  R  D  R L  + E G+ PDD     
Sbjct: 414 LESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTM 473

Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT--ELFNSISKD 395
           +++   +              K N K+G+    LL+E  I G      T   L N + K 
Sbjct: 474 VIDGYCK--------------KGNVKMGFK---LLKEMQINGHKPGVITYNVLMNGLCKQ 516

Query: 396 VKKAYCNCLIDLCVNLN----------LLENACK 419
            +    N L++  +NL           LLE  CK
Sbjct: 517 GQMKNANMLLEAMLNLGVTPDDITYNILLEGHCK 550



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 3/253 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +++A  L+D  +    R +   F+ LI     +   D  +N Y +M  +GVKP+++
Sbjct: 305 KEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLV 364

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN LL+ + +     + + +  EM   G+ P+  TY +L+  Y +    E  + + + M
Sbjct: 365 MYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGM 424

Query: 218 KEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            E+G+ L    +  L++  C D G   +A     +M  +   +PD  T++ +I     +G
Sbjct: 425 NEEGVVLDNVAFTALISGFCRD-GRVRDAERTLREMVEA-GMKPDDATYTMVIDGYCKKG 482

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            V     +  EM   G +P +     L+    K  +  +    L  +  LG+TPDD    
Sbjct: 483 NVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYN 542

Query: 337 CLLNVMTQTPKEE 349
            LL    +  K E
Sbjct: 543 ILLEGHCKNGKAE 555



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 1/179 (0%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LLD M  +  P  + T Y E+ + G  P    Y  L+  + +     D   ++ E++++G
Sbjct: 194 LLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRG 253

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
           ++ +   +NTL+         DE F + + M+ +    PD +T+S +I      G++  A
Sbjct: 254 LRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENR-IYPDVFTYSVLIHGLCKEGRLDVA 312

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
           E +F+EM + G  PN    T+LI    +++R D  +   +++  +G+ PD      LLN
Sbjct: 313 EQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLN 371



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 90/189 (47%), Gaps = 3/189 (1%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           Y E+   G  P +  YN L++   +       K I+ E+   GL P   ++ +L+    +
Sbjct: 211 YSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCK 270

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           +R  ++   + + M+E  +   V  Y+ L+      G  D A ++F++M+     +P+  
Sbjct: 271 SRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQ-QRGLRPNGI 329

Query: 264 TFSSMITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
           TF+++I    CR  ++  A   +++ML  G +P+L +  +L+    K    +   + ++ 
Sbjct: 330 TFTALID-GQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDE 388

Query: 323 LPELGITPD 331
           +  +G+ PD
Sbjct: 389 MRMVGMKPD 397



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   ++ +I  Y   GN      + +EM+  G KP +ITYN L++ + +  +      + 
Sbjct: 467 DDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLL 526

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
           + M + G++P+  TY  LL  + +    ED L +     EKG+ +    Y +L++
Sbjct: 527 EAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKL---RNEKGLIVDYAYYTSLVS 578


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 110/232 (47%), Gaps = 2/232 (0%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +  + F  +++ Y  A      +  +E+M + G+K ++  YN L+D + ++K+  +   I
Sbjct: 186 LSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAI 245

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +KEM   G   P+  TY  L+  +G  +      +VY+EM + G++  V  Y  L++   
Sbjct: 246 FKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFC 305

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  DEA ++F +M+ S  C P    +  +I       ++ EA   F    E+GF   +
Sbjct: 306 KSGKCDEAIKVFHEMEES-GCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEV 364

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
               ++I  Y +A       + ++ + + GI P+ R    +LN + ++ K E
Sbjct: 365 PTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIE 416



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 116/246 (47%), Gaps = 4/246 (1%)

Query: 97  TRAGNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +++  V+ A  ++ +  R  ++  D   ++ L++ +G   +      VY+EM   G+KP+
Sbjct: 234 SKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPD 293

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ Y  L+    ++ +  +   ++ EM ++G  P+ + Y  L+   G     ++ L  ++
Sbjct: 294 VVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQ 353

Query: 216 EMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             KE G  + V   N ++ A C  + +   AF++ ++M+ S    P++ T+  ++     
Sbjct: 354 LSKESGFPMEVPTCNAVIGAYCRALEF-HHAFKMVDEMRKS-GIGPNTRTYDIILNHLIK 411

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             K+ EA  +F  M   G EP L   T ++  +   +R D  ++   ++ E G+ P    
Sbjct: 412 SEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHM 471

Query: 335 CGCLLN 340
              L+N
Sbjct: 472 FSALIN 477



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G  + A  ++           P+ +  LI   G+    D  L  ++  K  G    + 
Sbjct: 306 KSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVP 365

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N ++    RA        +  EM  +G+ PN  TY  +L    ++   E+  ++++ M
Sbjct: 366 TCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRM 425

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +  +  Y  ++ M       D A ++++ MK  +   P    FS++I       +
Sbjct: 426 ERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMK-EKGVLPCMHMFSALINGLCFENR 484

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + EA   F EML+ G  P   + ++L +   +  R         RL  L  TP
Sbjct: 485 LEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLEMLRRTP 537


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 119/243 (48%), Gaps = 14/243 (5%)

Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
           +E A GL    + + +  +   ++TLI  Y   GN +  + V  +M   G++PN+IT++ 
Sbjct: 384 MEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST 443

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           L+D   +A +      +Y EM   GL P+   Y +L+  + +    ++   +++EM+E G
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAG 503

Query: 222 MQLSVTLYNTLL-AMCADVGYTDEAFEIF-----EDMKSSEN-------CQPDSWTFSSM 268
           +  +V   + L+  +C D G   +A ++F      D   S+        C P+   ++++
Sbjct: 504 LHPNVFTLSCLIDGLCKD-GRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTAL 562

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I      G++ +A   F++M  +G  P++F    +IQ + +A    DV+     + ++GI
Sbjct: 563 IQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGI 622

Query: 329 TPD 331
            P+
Sbjct: 623 IPN 625



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 24/256 (9%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-----NFDGCLNVYEEMKAIGV 152
           +AGN+  A  L+     EK  I P+ F+  I + G  G       DG L   +EMK  G 
Sbjct: 345 KAGNLSEALSLHSEI--EKHEILPDVFTYSILIKGLCGVDRMEEADGLL---QEMKKKGF 399

Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
            PN +TYN L+D   +     +   +  +MT+ G+ PN  T+++L+  Y +A   E  + 
Sbjct: 400 LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMG 459

Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
           +Y EM  KG+   V  Y  L+      G T EAF + ++M+ +    P+ +T S +I   
Sbjct: 460 LYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEA-GLHPNVFTLSCLIDGL 518

Query: 273 SCRGKVSEAEAMF-------------NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319
              G++S+A  +F             NE+  +   PN  + T+LIQ      R     + 
Sbjct: 519 CKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKF 578

Query: 320 LNRLPELGITPDDRFC 335
            + +   G+ PD   C
Sbjct: 579 FSDMRCSGLRPDVFTC 594



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 3/202 (1%)

Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
           + PN F  + LI  Y  AGN    L+++ E++   + P++ TY+ L+  +    R  +  
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388

Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
            + +EM   G  PN  TY +L+  Y +    E  + V  +M EKG++ ++  ++TL+   
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448

Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  + A  ++ +M   +   PD   ++++I      G   EA  +  EM EAG  PN
Sbjct: 449 CKAGKMEAAMGLYTEM-VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPN 507

Query: 297 LFVLTSLIQCYGKAQRTDDVVR 318
           +F L+ LI    K  R  D ++
Sbjct: 508 VFTLSCLIDGLCKDGRISDAIK 529



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 97/195 (49%), Gaps = 1/195 (0%)

Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
           +M + GV PN+  YN L+D   +A    +  +++ E+  + + P+  TY+ L++      
Sbjct: 323 DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
             E+   + +EMK+KG   +   YNTL+      G  ++A E+   M + +  +P+  TF
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM-TEKGIEPNIITF 441

Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
           S++I      GK+  A  ++ EM+  G  P++   T+LI  + K   T +  R    + E
Sbjct: 442 STLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQE 501

Query: 326 LGITPDDRFCGCLLN 340
            G+ P+     CL++
Sbjct: 502 AGLHPNVFTLSCLID 516



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 5/199 (2%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           G FD    VY +M A G  PN++TY  L+D   R     +   ++ EM +  + P    Y
Sbjct: 172 GRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIY 231

Query: 195 ASLLRAY-GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
             L+R   G +R  E   S++R M+  GM  ++  YNT++     + +  +A E++ +M 
Sbjct: 232 TILIRGLCGESRISEAE-SMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEM- 289

Query: 254 SSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
             +   P+  TF  +I  +C     VS A     +M   G  PN+FV   LI  Y KA  
Sbjct: 290 LGDGLLPNVVTFGILIDGLCKTDEMVS-ARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN 348

Query: 313 TDDVVRALNRLPELGITPD 331
             + +   + + +  I PD
Sbjct: 349 LSEALSLHSEIEKHEILPD 367



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 106/224 (47%), Gaps = 1/224 (0%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           ++   RN     +   ++T++  Y    +    L +Y EM   G+ PN++T+  L+D + 
Sbjct: 250 MFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLC 309

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +       +    +M   G+ PN   Y  L+  Y +A    + LS++ E+++  +   V 
Sbjct: 310 KTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVF 369

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            Y+ L+     V   +EA  + ++MK  +   P++ T++++I      G + +A  + ++
Sbjct: 370 TYSILIKGLCGVDRMEEADGLLQEMK-KKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           M E G EPN+   ++LI  Y KA + +  +     +   G+ PD
Sbjct: 429 MTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD 472



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 22/238 (9%)

Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GR 168
           +R E  +  PN F  LI  +   G  +  L VY +M    V P M   N +LD +   GR
Sbjct: 117 SRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGR 173

Query: 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR---EMKEKGMQLS 225
               W+V   Y +M   G SPN  TY +L+   G  R G D L  +R   EM EK +  +
Sbjct: 174 FDTMWKV---YGDMVARGASPNVVTYGTLID--GCCRQG-DFLKAFRLFDEMIEKKIFPT 227

Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
           V +Y  L+          EA  +F  M++S    P+ +T+++M+        V +A  ++
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNS-GMLPNLYTYNTMMDGYCKIAHVKKALELY 286

Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA---LNRLPELGITPDDRFCGCLLN 340
            EML  G  PN+     LI    K   TD++V A   L  +   G+ P+     CL++
Sbjct: 287 XEMLGDGLLPNVVTFGILIDGLCK---TDEMVSARKFLIDMASFGVVPNIFVYNCLID 341



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 142/347 (40%), Gaps = 52/347 (14%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   + TLI      G+F     +++EM    + P ++ Y  L+  +    R  + +++
Sbjct: 191 PNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESM 250

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT----------- 227
           ++ M ++G+ PN  TY +++  Y +  + +  L +Y EM   G+  +V            
Sbjct: 251 FRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCK 310

Query: 228 ------------------------LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
                                   +YN L+      G   EA  +  +++  E   PD +
Sbjct: 311 TDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE-ILPDVF 369

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+S +I       ++ EA+ +  EM + GF PN     +LI  Y K    +  +   +++
Sbjct: 370 TYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM 429

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEE--LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDF 381
            E GI P+      L++   +  K E  +G   E V K     G +  ++     I+G F
Sbjct: 430 TEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK-----GLLPDVVAYTALIDGHF 484

Query: 382 KKEATELFNSISKDVKKA-------YCNCLIDLCVNLNLLENACKLL 421
           K   T+    + K++++A         +CLID       + +A KL 
Sbjct: 485 KDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531


>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
 gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
 gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 426

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 121/266 (45%), Gaps = 30/266 (11%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++   R  K  +D    + +I +YG  G       ++  M+ +G++PN+++YN LL 
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 192

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G A+   +   +++ M    +  N  TY S++  YG+    E   ++ +EM+ +G++ 
Sbjct: 193 VYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEP 252

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----------------------------- 255
           +   Y+T++++   VG  D A  +F+ ++SS                             
Sbjct: 253 NSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLL 312

Query: 256 -ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
            E  +PD+      I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++  
Sbjct: 313 HELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYG 372

Query: 315 DVVRALNRLPELGITPDDRFCGCLLN 340
           +VV   +++  LG  PD      +LN
Sbjct: 373 NVVEVFDKMRGLGYFPDSNVIALILN 398



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++PN  +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 109/249 (43%), Gaps = 32/249 (12%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPD---------------SWTFSS----------- 267
                 G    A  +  ++K  +N   D               +W F             
Sbjct: 297 VAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 268 ----MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
               MI + S   K      +F++M   G+ P+  V+  ++  YGK    D        +
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416

Query: 324 PELGITPDD 332
            E+G    D
Sbjct: 417 QEVGCVFSD 425



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  PN    ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 38.5 bits (88), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 10/160 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +           + +  Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                 I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++ +
Sbjct: 321 IPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDK 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 381 MRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVG 420


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 44/282 (15%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  L +  + + +  D   + TLI  +   GN D    +++EM   G+  N++
Sbjct: 80  KDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVV 139

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLS-- 212
           TY+ L+  + R  +  +  T+   M ++G+ P+  TY  L+      GRA +  D L+  
Sbjct: 140 TYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLM 199

Query: 213 ------------------------------VYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
                                         + R M EKG +  V  YNTL+    D G  
Sbjct: 200 VEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKV 259

Query: 243 DEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
           DEA ++F  M  +ENC +P+ +TF+ +I      G++++A  +  +M++ G   NL    
Sbjct: 260 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 319

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC 335
            L+    KA +  + +    ++ +LG  P+        D FC
Sbjct: 320 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC 361



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 128/286 (44%), Gaps = 38/286 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           G V+ A  L++   + +  ++PN F+   LI      G     + ++ +M   G   N++
Sbjct: 257 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 316

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN LL    +A +  +   ++K++ D G  PN  TY+ L+  + + R       ++ EM
Sbjct: 317 TYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM 376

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD---------------- 261
           +  G+  ++  YNTL+A     G  ++A  +F++M ++ NC+PD                
Sbjct: 377 RTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNA-NCEPDIISFNTMIDGTLKAGD 435

Query: 262 -------------------SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
                              + TFS++I   S  G++ EA++    M+ +GF P+  V  S
Sbjct: 436 FQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDS 495

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
           L++       T +++  L+++   G   D +    +L  +  + +E
Sbjct: 496 LLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQE 541



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 1/192 (0%)

Query: 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200
           + +  EM    V P++++YN L++ + +AK+  +   +  EM   G  PN  T  +L+  
Sbjct: 18  MGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDG 77

Query: 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
             +    ++ + +   MK+KG    V LY TL++   + G  D   E+F++M   +    
Sbjct: 78  LCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEM-LGKGISA 136

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
           +  T+S ++      G+  EA  + N M E G  P++   T LI    K  R    +  L
Sbjct: 137 NVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL 196

Query: 321 NRLPELGITPDD 332
           N + E G  P +
Sbjct: 197 NLMVEKGEEPSN 208



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 7/237 (2%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R G V  A GL      +    D  +++TLI     A      + +  EM+A G  PN +
Sbjct: 10  RNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSV 69

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 214
           T   L+D + +  R  +   + + M   G   +   Y +L+  +   G    G++   ++
Sbjct: 70  TCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKE---LF 126

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
            EM  KG+  +V  Y+ L+     +G   EA  +   M +     PD  T++ +I     
Sbjct: 127 DEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAM-AEHGIHPDVVTYTGLIDGLCK 185

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            G+ + A  + N M+E G EP+      L+    K     D  + L  + E G   D
Sbjct: 186 DGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 242



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 3/173 (1%)

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +L  + R    ++   + +EM    +SP+  +Y +L+    +A+  ++ + +  EM+ 
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 220 KG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
            G    SVT    +  +C D G  DEA E+ E MK  +    D   + ++I+     G +
Sbjct: 62  AGCFPNSVTCTTLMDGLCKD-GRMDEAMELLEAMK-KKGFDADVVLYGTLISGFCNNGNL 119

Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
              + +F+EML  G   N+   + L+    +  +  +    LN + E GI PD
Sbjct: 120 DRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPD 172



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 1/147 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++E A  L+    N     D  +F+T+I     AG+F     +  +M  +G++P+ +
Sbjct: 397 KEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDAL 456

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T++ L++ + +     + K+  + M  +G +P+   Y SLL+         + +++  +M
Sbjct: 457 TFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQM 516

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTD 243
             KG  L   + +T+L  +C  +   D
Sbjct: 517 AAKGTVLDRKIVSTILTCLCHSIQEVD 543


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 110/232 (47%), Gaps = 2/232 (0%)

Query: 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           +  + F  +++ Y  A      +  +E+M + G+K ++  YN L+D + ++K+  +   I
Sbjct: 186 LSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAI 245

Query: 179 YKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           +KEM   G   P+  TY  L+  +G  +      +VY+EM + G++  V  Y  L++   
Sbjct: 246 FKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFC 305

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  DEA ++F +M+ S  C P    +  +I       ++ EA   F    E+GF   +
Sbjct: 306 KSGKCDEAIKVFHEMEES-GCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEV 364

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
               ++I  Y +A       + ++ + + GI P+ R    +LN + ++ K E
Sbjct: 365 PTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIE 416



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 116/246 (47%), Gaps = 4/246 (1%)

Query: 97  TRAGNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           +++  V+ A  ++ +  R  ++  D   ++ L++ +G   +      VY+EM   G+KP+
Sbjct: 234 SKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPD 293

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
           ++ Y  L+    ++ +  +   ++ EM ++G  P+ + Y  L+   G     ++ L  ++
Sbjct: 294 VVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQ 353

Query: 216 EMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
             KE G  + V   N ++ A C  + +   AF++ ++M+ S    P++ T+  ++     
Sbjct: 354 LSKESGFPMEVPTCNAVIGAYCRALEF-HHAFKMVDEMRKS-GIGPNTRTYDIILNHLIK 411

Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
             K+ EA  +F  M   G EP L   T ++  +   +R D  ++   ++ E G+ P    
Sbjct: 412 SEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHM 471

Query: 335 CGCLLN 340
              L+N
Sbjct: 472 FSALIN 477



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 1/233 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           ++G  + A  ++           P+ +  LI   G+    D  L  ++  K  G    + 
Sbjct: 306 KSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVP 365

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           T N ++    RA        +  EM  +G+ PN  TY  +L    ++   E+  ++++ M
Sbjct: 366 TCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRM 425

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
           +  G +  +  Y  ++ M       D A ++++ MK  +   P    FS++I       +
Sbjct: 426 ERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMK-EKGVLPCMHMFSALINGLCFDNR 484

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           + EA   F EML+ G  P   + ++L +   +  R         RL  L  TP
Sbjct: 485 LEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLEMLRRTP 537


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 44/293 (15%)

Query: 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
           F +  R+R    +++   F++L++ +  AG F   + V+  MK+ GV P+++T+N+LL  
Sbjct: 135 FSIEKRSRG-IVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTI 193

Query: 166 MGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           + +  R    K +Y EM    G++P+  T+  L+R +      +D   ++ ++   G + 
Sbjct: 194 LLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEP 253

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
            V  YNTL+      G    A+ + + M K S +  P+  T++++I     + ++ +A A
Sbjct: 254 DVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALA 313

Query: 284 MFNEMLEAG------------------------------------FEPNLFVLTSLIQCY 307
           +F EM+  G                                    F P+     +L+ C+
Sbjct: 314 VFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCH 373

Query: 308 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVE 355
             A   DD ++   R+ EL I PD      L+  + Q    E     L KL+E
Sbjct: 374 CHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLE 426



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 10/231 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   MA  +YD   +  + + P+ F+   LI+ +   G  D    ++ ++   G +P+
Sbjct: 196 KRGRTNMAKKVYDEMLST-YGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPD 254

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSV 213
           ++TYN L+D + RA +      + K M      L+PN  TY +L+R Y   R  E  L+V
Sbjct: 255 VVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAV 314

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + EM  +G++ +   YNTL+    +    ++  +I E         PD+ TF++++  C 
Sbjct: 315 FEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMH-CH 373

Query: 274 CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRAL 320
           C  G + +A  +F  M E   +P+    ++L++     G  ++ +D++  L
Sbjct: 374 CHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKL 424



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 13/178 (7%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR------ 215
           +L T+G  +   +    +    + G +    +Y S+L   GR R+    L+  R      
Sbjct: 82  VLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRH----LNTARNFLFSI 137

Query: 216 EMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           E + +G+ +L    +N+L+      G   E+ ++F  MK S    P   TF+S++TI   
Sbjct: 138 EKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMK-SHGVSPSVVTFNSLLTILLK 196

Query: 275 RGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           RG+ + A+ +++EML   G  P+ F    LI+ +      DD  R  N L   G  PD
Sbjct: 197 RGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPD 254



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 101/253 (39%), Gaps = 49/253 (19%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG V +A+ +      +   ++PN   ++TLI+ Y      +  L V+EEM   G+K N
Sbjct: 267 RAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKAN 326

Query: 156 MITYNNLLDTMGRAKRPWQVKTI------------------------------------Y 179
            ITYN L+  +  A++  ++K I                                    +
Sbjct: 327 NITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVF 386

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-------VTLYNTL 232
           + M++  + P+  TY++L+R+  +  + E    +  ++ E+ + LS       V  YN +
Sbjct: 387 ERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPI 446

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEA 291
                + G T +A + F  +       P S+     + +  C+ G       +   ML  
Sbjct: 447 FKYLCETGKTKKAEKAFRQLMRRGTQDPPSY---KTLIMGHCKEGTFESGYELLVLMLRK 503

Query: 292 GFEPNLFVLTSLI 304
            F P+     SLI
Sbjct: 504 DFXPDFETYESLI 516



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 99/248 (39%), Gaps = 48/248 (19%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+TL+  +  AGN D  L V+E M  + ++P+  TY+ L+ ++ +     + + + 
Sbjct: 362 DTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLL 421

Query: 180 KEMTDNGLSPNWNTYASLLRAY----------GRARYGEDTLSVYREMKEKGMQLSVTLY 229
            ++ +  +  + +    L+ AY          G+ +  E     +R++  +G Q   +  
Sbjct: 422 DKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAE---KAFRQLMRRGTQDPPSYK 478

Query: 230 NTLLAMCADVGYTDEAFEI------------FEDMKSSENC------------------- 258
             ++  C + G  +  +E+            FE  +S  N                    
Sbjct: 479 TLIMGHCKE-GTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLR 537

Query: 259 ---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
              +P+S TF S++     +G+ SE+ ++   ML+     NL   T  ++    A   D 
Sbjct: 538 SSHRPNSSTFHSILAKLLEQGRASESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDK 597

Query: 316 VVRALNRL 323
             + ++ L
Sbjct: 598 AFQLVHLL 605


>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 426

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 121/266 (45%), Gaps = 30/266 (11%)

Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
           A  ++   R  K  +D    + +I +YG  G       ++  M+ +G++PN+++YN LL 
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 192

Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
             G A+   +   +++ M    +  N  TY S++  YG+    E   ++ +EM+ +G++ 
Sbjct: 193 VYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEP 252

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----------------------------- 255
           +   Y+T++++   VG  D A  +F+ ++SS                             
Sbjct: 253 NSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLL 312

Query: 256 -ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
            E  +PD+      I I +  G++ EA  +F + ++AG   ++ V   +I  + K ++  
Sbjct: 313 HELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYG 372

Query: 315 DVVRALNRLPELGITPDDRFCGCLLN 340
           +VV   +++  LG  PD      +LN
Sbjct: 373 NVVEVFDKMRGLGYFPDSNVIALILN 398



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   +STLI  +G  G FD  L+  ++M+   V  +++ Y+NL++   +     +  +I+
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIF 67

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +  +G +P+   Y +++  +G+A+   +  S+  EM+  G+  +   Y+TLL M  + 
Sbjct: 68  SRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVEN 127

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
               EA  +F +M+  + C  D  T + MI +    G   EA+ +F  M + G EPN+  
Sbjct: 128 KKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 300 LTSLIQCYGKAQ 311
             +L++ YG A+
Sbjct: 187 YNTLLRVYGDAE 198



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 119/267 (44%), Gaps = 43/267 (16%)

Query: 107 GLYDRA-----RNEKWRI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           GL+D A     + E+ R+  D   +S LI+L     ++   ++++  +K  G  P+++ Y
Sbjct: 23  GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 82

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +++  G+AK   + +++  EM   G++P   +Y++LL  Y   +   + LSV+ EM+E
Sbjct: 83  NAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVENKKFLEALSVFAEMRE 142

Query: 220 -----------------------------------KGMQLSVTLYNTLLAMCADVGYTDE 244
                                               G++ +V  YNTLL +  D     E
Sbjct: 143 IKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGE 202

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           A  +F  M+  +N + +  T++SM+ I     +  +A  +  EM   G EPN    +++I
Sbjct: 203 AIHLFRLMQ-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTII 261

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPD 331
             +GK  + D       +L   G+  D
Sbjct: 262 SIWGKVGKLDRAAMLFQKLRSSGVDID 288



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 109/249 (43%), Gaps = 32/249 (12%)

Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
           K  I+PN  +++TL+++YG A  F   ++++  M+   ++ N++TYN+++   G+     
Sbjct: 177 KMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 236

Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
           +   + +EM + G+ PN  TY++++  +G+    +    ++++++  G+ +   LY T++
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMI 296

Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPD---------------SWTFSS----------- 267
                 G    A  +  ++K  +N   D               +W F             
Sbjct: 297 VAYERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 268 ----MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
               MI + S   K      +F++M   G+ P+  V+  ++  YGK    D        +
Sbjct: 357 VFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416

Query: 324 PELGITPDD 332
            E+G    D
Sbjct: 417 QEVGCVFSD 425



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 1/161 (0%)

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
           +  LSP+  TY++L+  +G+    +  LS  ++M++  +   + LY+ L+ +   +    
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           +A  IF  +K S    PD   +++MI +        EA ++ +EM  AG  P     ++L
Sbjct: 62  KAISIFSRLKRS-GFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTL 120

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
           +  Y + ++  + +     + E+    D   C  +++V  Q
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 161



 Score = 38.5 bits (88), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 10/160 (6%)

Query: 68  GKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDP 121
           GK G   ++ +           + +  Y T      RAG V  A     R  +E  R D 
Sbjct: 265 GKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA----KRLLHELKRPDN 320

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
                 I +   AG  +    V+ +    G   ++  +  ++    + K+   V  ++ +
Sbjct: 321 IPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDK 380

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           M   G  P+ N  A +L AYG+    +    VY EM+E G
Sbjct: 381 MRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVG 420


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 1/210 (0%)

Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
           N F+ +I  Y     F   +     M      P+ +TYN +LD + +  R    + +  +
Sbjct: 209 NTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMD 268

Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
           M   GL PN NTY  L+  Y +  + ++  +V   M +  +   V  YN L+    + G 
Sbjct: 269 MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328

Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
            +EAF++ ++M++ +   PD  +++++I  C    K+SEA  +  EM E G +PN     
Sbjct: 329 IEEAFKLRDEMENLK-LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHN 387

Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +++ Y K  + DD    + ++ E G +PD
Sbjct: 388 IMVKWYCKEGKMDDASNTITKMEESGFSPD 417



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 36/233 (15%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           R   +E A+ L   AR   + ID  ++ TLI  Y   GN D  L +++EMK   + P+ +
Sbjct: 465 REKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTV 524

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TYN ++  + +  +  Q  +   E+ ++GL P+  TY ++L  Y R    E     + +M
Sbjct: 525 TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKM 584

Query: 218 KE-----------------------------------KGMQLSVTLYNTLLAMCADVGYT 242
            E                                   KG  +    YNTL+      G  
Sbjct: 585 VENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRL 644

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
           D+AF +  +M+  E   PD +T++++IT  +  G++ EAE   ++MLE G  P
Sbjct: 645 DDAFNLLSEMEEKE-LGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLP 696



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 117/276 (42%), Gaps = 38/276 (13%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G +E AF L D   N K   D  +++TLI              + EEM   GVKPN +T+
Sbjct: 327 GRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTH 386

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N ++    +  +         +M ++G SP+  TY +L+  Y +A    +      EM  
Sbjct: 387 NIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR 446

Query: 220 KGMQL-SVTLYNTLLAMCAD-----------------------------VGY-----TDE 244
           K M++ SVTL   L  +C +                             VGY      D 
Sbjct: 447 KNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDR 506

Query: 245 AFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           A +++++MK  E   P + T++ +I  +C C GK  +A +  NE+LE+G  P+     ++
Sbjct: 507 ALKLWDEMKEKE-IIPSTVTYNCIIGGLCQC-GKTEQAISKLNELLESGLLPDETTYNTI 564

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
           +  Y +    +   +  N++ E    PD   C  LL
Sbjct: 565 LHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILL 600



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 10/266 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW--QVKT 177
           D   ++T++      G      ++  +MK+ G+ PN  TYN L+   G  K  W  +   
Sbjct: 242 DNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILV--YGYCKMGWLKEAAN 299

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + + MT N L P+  TY  L+         E+   +  EM+   +   V  YNTL+  C 
Sbjct: 300 VIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCL 359

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
           +     EAF++ E+M S +  +P++ T + M+      GK+ +A     +M E+GF P+ 
Sbjct: 360 EWSKISEAFKLLEEM-SEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDC 418

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356
               +LI  Y KA    +  R ++ +    +  D      +L  + +  K EE  KL+  
Sbjct: 419 VTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLS- 477

Query: 357 VEKSNSKLGYVVKLLLEEQDIEGDFK 382
              S  K GY +  +     I G FK
Sbjct: 478 ---SARKRGYFIDEVSYGTLIVGYFK 500



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 8/206 (3%)

Query: 107 GLYDRARNEKWRIDPNAFS-------TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G  D A N   +++ + FS       TLI  Y  AGN        +EM    +K + +T 
Sbjct: 397 GKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTL 456

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           N +L T+ R K+  +   +       G   +  +Y +L+  Y +    +  L ++ EMKE
Sbjct: 457 NTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKE 516

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           K +  S   YN ++      G T++A     ++  S    PD  T+++++      G V 
Sbjct: 517 KEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLES-GLLPDETTYNTILHGYCREGDVE 575

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQ 305
           +A    N+M+E  F+P++F    L++
Sbjct: 576 KAFQFHNKMVENSFKPDVFTCNILLR 601



 Score = 38.5 bits (88), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 29/213 (13%)

Query: 92  EKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNV 143
           E +Y+T      R G+VE AF  +++     ++  P+ F+  I L G    G  +  L +
Sbjct: 558 ETTYNTILHGYCREGDVEKAFQFHNKMVENSFK--PDVFTCNILLRGLCMEGMLEKALKL 615

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-- 201
           +    + G   + +TYN L+ ++ +  R      +  EM +  L P+  TY +++ A   
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTD 675

Query: 202 -GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260
            GR R  E+ +S   +M EKG      L   +L +        +  E     ++SE    
Sbjct: 676 SGRIREAEEFMS---KMLEKG-----XLPXQVLQL--------DXNETVVTSETSEESDS 719

Query: 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
            S  +S  I      GK  +A  +F E  + G 
Sbjct: 720 SSVAYSEWIKELCTEGKYKDAMRIFGESKQKGI 752


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 118/240 (49%), Gaps = 16/240 (6%)

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
            V++E++ + V P+  ++N L+    +A+   + +   KEM ++G SP+  TY SL+ AY
Sbjct: 251 GVFQELRGV-VPPDESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAY 309

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
              +  +   ++  EM  KG + +V  Y  ++      G T EA ++F+ +K  + C PD
Sbjct: 310 CMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVK-RDGCVPD 368

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
           +  ++S+I I    G++ +A ++F+EM   G  P + +  ++I       + ++ ++ L 
Sbjct: 369 ASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAENALKILV 428

Query: 322 RLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDF 381
           ++ E    PD         + T TP  +L     C ++   K+   +   +  +DI  DF
Sbjct: 429 KMEEQSCKPD---------IKTYTPLLKL-----CCKRQWMKILPFLICHMFRKDISPDF 474



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 91/181 (50%), Gaps = 1/181 (0%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           +++LI+ Y    +F     +  EM + G +PN+ITY  ++  +G+A R  +   ++ ++ 
Sbjct: 302 YTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVK 361

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
            +G  P+ + Y S++   GRA   ED  SV+ EM   G+  +V ++NT+++   D    +
Sbjct: 362 RDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAE 421

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
            A +I   M+  ++C+PD  T++ ++ +C  R  +     +   M      P+      L
Sbjct: 422 NALKILVKME-EQSCKPDIKTYTPLLKLCCKRQWMKILPFLICHMFRKDISPDFSTYILL 480

Query: 304 I 304
           +
Sbjct: 481 V 481



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 1/212 (0%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D ++F+TL+  +  A   +   +  +EM+  G  P++ITY +L++     K    V  I 
Sbjct: 263 DESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAIL 322

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
            EM   G  PN  TY  ++ A G+A   ++ L V+ ++K  G     + YN+++ +    
Sbjct: 323 NEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRA 382

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G  ++A  +F++M       P    F++MI+      +   A  +  +M E   +P++  
Sbjct: 383 GRLEDANSVFDEM-CRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQSCKPDIKT 441

Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            T L++   K Q    +   +  +    I+PD
Sbjct: 442 YTPLLKLCCKRQWMKILPFLICHMFRKDISPD 473



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 49/102 (48%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG  + A  ++D+ + +    D + ++++I + G AG  +   +V++EM   G+ P + 
Sbjct: 346 KAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVA 405

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
            +N ++       +      I  +M +    P+  TY  LL+
Sbjct: 406 IFNTMISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLLK 447


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 121/275 (44%), Gaps = 33/275 (12%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G V+ A  ++   + +    D   +S+LI  +   G  +    +++EM   G+ PN+ 
Sbjct: 536 KNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIF 595

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            YN L+D + ++    + + ++  M + GL P+  TY++++  Y ++    +  S++ EM
Sbjct: 596 IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM 655

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM----------------------KSS 255
             KG+Q    +YN L+  C   G  ++A  +F +M                      K  
Sbjct: 656 PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQ 715

Query: 256 ENCQ-----------PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
           E  Q           PD  T++++I      GK+ EA  +F EM E     +    TSL+
Sbjct: 716 EASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLM 775

Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
             Y K  ++ +V     ++   G+ PD+   G ++
Sbjct: 776 YGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 810



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 114/230 (49%), Gaps = 4/230 (1%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++ G +  A   +D   +     +   ++ LI  +  AGN    L+++  + A+GV P++
Sbjct: 465 SKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDV 524

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
            T +  +  + +  R  +   ++ E+ + GL P+  TY+SL+  + +    E    ++ E
Sbjct: 525 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE 584

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M  KG+  ++ +YN L+      G    A ++F+ M   +  +PDS T+S+MI       
Sbjct: 585 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM-PEKGLEPDSVTYSTMIDGYCKSE 643

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            V+EA ++F+EM   G +P+ FV  +L+       +  D+ +A+N   E+
Sbjct: 644 NVAEAFSLFHEMPSKGVQPHSFVYNALVH---GCCKEGDMEKAMNLFREM 690



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 123/285 (43%), Gaps = 21/285 (7%)

Query: 68  GKTGSSPKSYIW--VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFS 125
           G+ G  P +Y +  +     RA ++ E                ++  +    + D NA S
Sbjct: 201 GEKGLVPNTYTYTIITAGLCRAKRMNEAKLT------------FEEMQKTGLKPDYNACS 248

Query: 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185
            LI  +   G+ D  L + + M + G+  N+ITYN L+  + +  +  +   I K M   
Sbjct: 249 ALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITL 308

Query: 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL---LAMCADVGYT 242
           G  PN  T+  L+  Y R       L +  EM+++ +  S   Y  +   L  C D+   
Sbjct: 309 GCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLA 368

Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
           +   ++ E M  S   +P+   +S++I   +  G++ EA  + + M  +G  P++F   +
Sbjct: 369 N---KLLEKMTFS-GLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 424

Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
           +I C  KA + ++    L  +   G+ PD    G  +   ++T K
Sbjct: 425 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGK 469



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 38/250 (15%)

Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN--------------- 161
           + PN   +STLI  Y + G  +    + + M   GV P++  YN                
Sbjct: 380 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 439

Query: 162 --LLDTMGRAKRPWQV------------------KTIYKEMTDNGLSPNWNTYASLLRAY 201
             LL+  GR  +P  V                     + EM D+GL PN   Y  L+  +
Sbjct: 440 TYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGH 499

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            +A    + LS++R +   G+   V   +  +      G   EA ++F ++K  +   PD
Sbjct: 500 FKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK-EKGLVPD 558

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321
            +T+SS+I+    +G+V +A  + +EM   G  PN+F+  +L+    K+       +  +
Sbjct: 559 VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFD 618

Query: 322 RLPELGITPD 331
            +PE G+ PD
Sbjct: 619 GMPEKGLEPD 628



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 108/234 (46%), Gaps = 1/234 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
           ++AG +E A       +    + D   F   I  Y   G        ++EM   G+ PN 
Sbjct: 430 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNN 489

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
             Y  L++   +A    +  +I++ +   G+ P+  T ++ +    +    ++ L V+ E
Sbjct: 490 PLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSE 549

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           +KEKG+   V  Y++L++     G  ++AFE+ ++M   +   P+ + +++++      G
Sbjct: 550 LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM-CLKGIAPNIFIYNALVDGLCKSG 608

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
            +  A  +F+ M E G EP+    +++I  Y K++   +     + +P  G+ P
Sbjct: 609 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQP 662



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 112/235 (47%), Gaps = 4/235 (1%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G++E A  L+ R   +K      +F+TLI  Y  +        +++EM A  + P+ +
Sbjct: 676 KEGDMEKAMNLF-REMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHV 734

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  ++D   +A +  +   ++KEM +  L  +  TY SL+  Y +     +  +++ +M
Sbjct: 735 TYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM 794

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
             KG++     Y  ++ A C +     EAF++  D    +           +IT    R 
Sbjct: 795 VAKGVKPDEVTYGLVIYAHCKEDNLV-EAFKL-RDEVVGKGMLTKGTIHDLLITALCKRE 852

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            ++EA  + +EM E G +P+L   ++L++ + +A + D+  R    +  LG+ PD
Sbjct: 853 DLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 907



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 57/269 (21%)

Query: 121 PNAFSTLIKLYGTAGNFDGCLNVY------------------EEMKAIGVKPNMITYNNL 162
           P  F  LI  Y   G  D   NV+                    M   G+ PN  TY  +
Sbjct: 156 PVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTII 215

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
              + RAKR  + K  ++EM   GL P++N  ++L+  + R    ++ L +   M   G+
Sbjct: 216 TAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGI 275

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT------------ 270
            +++  YN L+      G  ++A EI + M +   C+P+S TF  +I             
Sbjct: 276 PINLITYNVLIHGLCKFGKMEKAAEILKGMITL-GCKPNSRTFCLLIEGYCREHNMGRAL 334

Query: 271 ------------------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
                                   +C C+  +S A  +  +M  +G +PN+ V ++LI  
Sbjct: 335 ELLDEMEKRNLVPSAVSYGAMINGLCHCK-DLSLANKLLEKMTFSGLKPNVVVYSTLIMG 393

Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFC 335
           Y    R ++  R L+ +   G+ P D FC
Sbjct: 394 YASEGRIEEARRLLDGMSCSGVAP-DIFC 421


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 132/288 (45%), Gaps = 31/288 (10%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG  + AF +      + +  D + +S +I     A   +   +++EEMK  G+ P++ T
Sbjct: 438 AGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYT 497

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+D+  +A    Q +  + EM   G +PN  TY +L+ AY +A+       ++  M 
Sbjct: 498 YTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMML 557

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE----DMKSSE----------NCQ-PDSW 263
            +G + +V  Y  L+      G  ++A +I+     D++SS+          NC+ P+  
Sbjct: 558 LEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVI 617

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+ +++       +V EA  + + ML  G EPN  V  ++I  + K  +  D      ++
Sbjct: 618 TYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKM 677

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLL 371
            E G +P         N+ T +        ++C+ K N +L  V+K+L
Sbjct: 678 SERGYSP---------NLYTYS------SFIDCLFKDN-RLDLVLKVL 709



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 17/223 (7%)

Query: 98  RAGNVEMAFGLYDRAR--------NEKWRIDPN--------AFSTLIKLYGTAGNFDGCL 141
           +AG +E A  +Y R R        ++ +++D N         +  L+     A       
Sbjct: 577 KAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAH 636

Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
            + + M A G +PN I Y+ ++D   +  +    + ++ +M++ G SPN  TY+S +   
Sbjct: 637 ELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCL 696

Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
            +    +  L V  +M E     +V +Y  ++     +G TDEA+++   M+  + C P+
Sbjct: 697 FKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEE-KGCNPN 755

Query: 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
             T+++MI      GK+ +   +F +M   G  PN      LI
Sbjct: 756 VVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLI 798



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 20/234 (8%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG ++ A   +D   ++    +   ++ LI  Y  A        ++E M   G KPN++
Sbjct: 507 KAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVV 566

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+D   +A +  +   IY  M  +  S + + Y  L                    
Sbjct: 567 TYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGP------------ 614

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
                  +V  Y  L+          EA E+ + M  +  C+P+   + ++I      GK
Sbjct: 615 -------NVITYGALVDGLCKANRVKEAHELLDTM-LAHGCEPNQIVYDAVIDGFCKIGK 666

Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           + +A+ +F +M E G+ PNL+  +S I C  K  R D V++ L+++ E   TP+
Sbjct: 667 LQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPN 720



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 110/275 (40%), Gaps = 44/275 (16%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G    AF L D A  E +  D   ++ ++     A  F+  +++   M++    PN++
Sbjct: 258 KGGKCREAFDLIDEA--EDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVV 315

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LL    R  +  + K I   M   G  PN   + SL+ AY ++R       ++++M
Sbjct: 316 TYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKM 375

Query: 218 KEKGMQLSVTLYNTLL-AMCAD-------------------------------------- 238
            + G Q    +YN  + ++C++                                      
Sbjct: 376 IKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCL 435

Query: 239 --VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
              G  D+AF+I  +M   +   PD  T+S +I       KV +A ++F EM   G  P+
Sbjct: 436 CGAGKFDQAFKIICEMM-GKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPS 494

Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           ++  T LI  + KA       +  + +   G TP+
Sbjct: 495 VYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPN 529



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 1/180 (0%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           Y EM  +GV  N +  +N    +  A +  Q   I  EM   G  P+ +TY+ ++     
Sbjct: 413 YSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCD 472

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           A   E   S++ EMK  G+  SV  Y  L+      G   +A + F++M   + C P+  
Sbjct: 473 ASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEM-LHKGCTPNVV 531

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T++++I       ++  A+ +F  ML  G +PN+   T+LI  + KA + +   +   R+
Sbjct: 532 TYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARM 591



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 74/158 (46%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G ++ A  ++ +     +  +   +S+ I         D  L V  +M      PN++
Sbjct: 663 KIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVV 722

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y  ++D + +  +  +   +  +M + G +PN  TY +++  +G++   E  L ++R+M
Sbjct: 723 IYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDM 782

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
             KG   +   Y  L+  C   G  DEA+++ ++MK +
Sbjct: 783 CSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQT 820



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT---YASLLRAYGR 203
           +K  G KP+  TYN L+    RA +      + +EM       +  T   +A  L   G+
Sbjct: 202 LKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGK 261

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
            R   D +      + +        YN +++   +    +EA +I   M+SS +C P+  
Sbjct: 262 CREAFDLID-----EAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSS-SCIPNVV 315

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T+  +++ C  +G++   + + + M+  G  PN  +  SLI  Y K++      +   ++
Sbjct: 316 TYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKM 375

Query: 324 PELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 364
            + G  P        +  +    ++    +++ VEK+ S++
Sbjct: 376 IKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEM 416


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 44/293 (15%)

Query: 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
           F +  R+R    +++   F++L++ +  AG F   + V+  MK+ GV P+++T+N+LL  
Sbjct: 135 FSIEKRSRG-IVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTI 193

Query: 166 MGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
           + +  R    K +Y EM    G++P+  T+  L+R +      +D   ++ ++   G + 
Sbjct: 194 LLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEP 253

Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
            V  YNTL+      G    A+ + + M K S +  P+  T++++I     + ++ +A A
Sbjct: 254 DVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALA 313

Query: 284 MFNEMLEAG------------------------------------FEPNLFVLTSLIQCY 307
           +F EM+  G                                    F P+     +L+ C+
Sbjct: 314 VFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCH 373

Query: 308 GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVE 355
             A   DD ++   R+ EL I PD      L+  + Q    E     L KL+E
Sbjct: 374 CHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLE 426



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 10/231 (4%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G   MA  +YD   +  + + P+ F+   LI+ +   G  D    ++ ++   G +P+
Sbjct: 196 KRGRTNMAKKVYDEMLS-TYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPD 254

Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSV 213
           ++TYN L+D + RA +      + K M      L+PN  TY +L+R Y   R  E  L+V
Sbjct: 255 VVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAV 314

Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
           + EM  +G++ +   YNTL+    +    ++  +I E         PD+ TF++++  C 
Sbjct: 315 FEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMH-CH 373

Query: 274 CR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRAL 320
           C  G + +A  +F  M E   +P+    ++L++     G  ++ +D++  L
Sbjct: 374 CHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKL 424



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 13/178 (7%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR------ 215
           +L T+G  +   +    +    + G +    +Y S+L   GR R+    L+  R      
Sbjct: 82  VLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRH----LNTARNFLFSI 137

Query: 216 EMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
           E + +G+ +L    +N+L+      G   E+ ++F  MK S    P   TF+S++TI   
Sbjct: 138 EKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMK-SHGVSPSVVTFNSLLTILLK 196

Query: 275 RGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           RG+ + A+ +++EML   G  P+ F    LI+ +      DD  R  N L   G  PD
Sbjct: 197 RGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPD 254



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 101/253 (39%), Gaps = 49/253 (19%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           RAG V +A+ +      +   ++PN   ++TLI+ Y      +  L V+EEM   G+K N
Sbjct: 267 RAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKAN 326

Query: 156 MITYNNLLDTMGRAKRPWQVKTI------------------------------------Y 179
            ITYN L+  +  A++  ++K I                                    +
Sbjct: 327 NITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVF 386

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-------VTLYNTL 232
           + M++  + P+  TY++L+R+  +  + E    +  ++ E+ + LS       V  YN +
Sbjct: 387 ERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPI 446

Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEA 291
                + G T +A + F  +       P S+     + +  C+ G       +   ML  
Sbjct: 447 FKYLCETGKTKKAEKAFRQLMRRGTQDPPSY---KTLIMGHCKEGTFESGYELLVLMLRK 503

Query: 292 GFEPNLFVLTSLI 304
            F P+     SLI
Sbjct: 504 DFLPDFETYESLI 516



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 99/248 (39%), Gaps = 48/248 (19%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           D   F+TL+  +  AGN D  L V+E M  + ++P+  TY+ L+ ++ +     + + + 
Sbjct: 362 DTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLL 421

Query: 180 KEMTDNGLSPNWNTYASLLRAY----------GRARYGEDTLSVYREMKEKGMQLSVTLY 229
            ++ +  +  + +    L+ AY          G+ +  E     +R++  +G Q   +  
Sbjct: 422 DKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAE---KAFRQLMRRGTQDPPSYK 478

Query: 230 NTLLAMCADVGYTDEAFEI------------FEDMKSSENC------------------- 258
             ++  C + G  +  +E+            FE  +S  N                    
Sbjct: 479 TLIMGHCKE-GTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLR 537

Query: 259 ---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315
              +P+S TF S++     +G+ SE+ ++   ML+     NL   T  ++    A   D 
Sbjct: 538 SSHRPNSSTFHSILAKLLEQGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDK 597

Query: 316 VVRALNRL 323
             + ++ L
Sbjct: 598 AFQLVHLL 605


>gi|422294671|gb|EKU21971.1| hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 472

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 120 DPNAFSTLIKLYGTA-GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           D   +S L++ Y T  G+      V E M   GV PN  TYN L++   +A      + +
Sbjct: 92  DVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEGYVKAGEMDWAEDV 151

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
            + M   GL+P    Y  L+ AY R R       +   MK++G+Q +V ++ TL+   A 
Sbjct: 152 LERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVFTTLMNAYAK 211

Query: 239 VGYTDEAFEIF--------EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
            G  + A  +         E+   S++C+P+  T+S+++ + +  G  + AE +   M  
Sbjct: 212 RGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYARAGLAAGAEGVLTRMTA 271

Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           AG+ PN+   T+L+  Y +A   +     L R+   G++P+
Sbjct: 272 AGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPN 312



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 2/190 (1%)

Query: 152 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211
           +KPN ITYN+LL     A      + + K M   GLSP+  T+ +L+ A+   R      
Sbjct: 19  LKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAE 78

Query: 212 SVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
            +   M+E G+   V  Y+ LL       G   +A E+ E M + +   P+S+T++ +I 
Sbjct: 79  KMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERM-ARDGVAPNSYTYNYLIE 137

Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
                G++  AE +   M   G  P       L+  Y + +      + L+R+ + G+  
Sbjct: 138 GYVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQA 197

Query: 331 DDRFCGCLLN 340
           + +    L+N
Sbjct: 198 NVQVFTTLMN 207



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 10/202 (4%)

Query: 114 NEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
            E   + PNA  +++L+  Y  AG+  G   V + M   G+ P+  T+N L+      + 
Sbjct: 14  GEGGNLKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARRE 73

Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAY----GRARYGEDTLSVYREMKEKGMQLSVT 227
               + +   M ++G+  +  TY+ LL+ Y    G     E+ L     M   G+  +  
Sbjct: 74  VRAAEKMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLE---RMARDGVAPNSY 130

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
            YN L+      G  D A ++ E M++     P S  +  ++   + R     AE + + 
Sbjct: 131 TYNYLIEGYVKAGEMDWAEDVLERMRTV-GLAPTSMNYCVLMDAYTRRRDARGAEKILDR 189

Query: 288 MLEAGFEPNLFVLTSLIQCYGK 309
           M + G + N+ V T+L+  Y K
Sbjct: 190 MKKEGVQANVQVFTTLMNAYAK 211



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 23/158 (14%)

Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
           +PN   +STL+ +Y  AG   G   V   M A G  PN+IT+  L+    RA  P   + 
Sbjct: 240 EPNVHTYSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAEL 299

Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
           + K M   G+SPN  TY +LL A  R    E       E++E+  +  + +Y+T+     
Sbjct: 300 VLKRMEAAGVSPNVLTYNTLLSATSRMGLREG------EVEERRAKRVLQVYDTMRRSAG 353

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
             G  ++A              PD  T++ ++T C  R
Sbjct: 354 KGGGLEKA--------------PDEATYTVLLT-CLLR 376



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 16/117 (13%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           RAG    A G+  R     W  +   F+TL+  Y  AG+ +G   V + M+A GV PN++
Sbjct: 255 RAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNVL 314

Query: 158 TYNNLLDT---MG---------RAKRPWQVKTIYKEMTDNG----LSPNWNTYASLL 198
           TYN LL     MG         RAKR  QV    +     G     +P+  TY  LL
Sbjct: 315 TYNTLLSATSRMGLREGEVEERRAKRVLQVYDTMRRSAGKGGGLEKAPDEATYTVLL 371


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 41/247 (16%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++ LI  YG    F  C  + EEM+  G KPN+I+Y +L++ + +  +  + + + ++M 
Sbjct: 350 YNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMV 409

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             G+ PN N Y  L+          + L  + EM + G+  ++  YN+L+     +G   
Sbjct: 410 GRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLK 469

Query: 244 EAFEIFEDMKSSENC----------------------------------QPDSWTFSSMI 269
           EA E+F  + S+ +C                                  +P   TF  +I
Sbjct: 470 EAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLI 529

Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN---RLPEL 326
           + CS  G +   E +FNEML+    P+  V  ++I CY   Q T  V +A +    + ++
Sbjct: 530 SGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCY---QETGHVQKAFSLQKEMVDM 585

Query: 327 GITPDDR 333
           G+ PD++
Sbjct: 586 GVRPDNK 592



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 4/185 (2%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TI 178
           D   +++LI  Y  AGN   CL +YE MK +G+KP + T++ L+   G +K   ++K T+
Sbjct: 486 DVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLIS--GCSKEGIKLKETL 543

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
           + EM    LSP+   Y +++  Y    + +   S+ +EM + G++     YN+L+     
Sbjct: 544 FNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLK 603

Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
            G   E  ++ +DMK ++   P++ T+S +I         + A   + EMLE GF PN+ 
Sbjct: 604 EGKLSETKDLVDDMK-AKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVC 662

Query: 299 VLTSL 303
           +   L
Sbjct: 663 ICNEL 667



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 36/242 (14%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           ++T++  Y   G+ D  +   E+M++ G++PN I +N+++D     +   + +   K+M 
Sbjct: 280 YNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMV 339

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCAD---- 238
             G++P+  TY  L+  YGR         +  EM+E G + +V  Y +L+  +C D    
Sbjct: 340 GKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKIL 399

Query: 239 ------------------------------VGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
                                         VG   EA   F++M S         T++S+
Sbjct: 400 EAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEM-SKNGIGATIVTYNSL 458

Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
           I      GK+ EAE MF  +   G  P++    SLI  Y  A  +   +     + +LG+
Sbjct: 459 IKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGL 518

Query: 329 TP 330
            P
Sbjct: 519 KP 520



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 8/212 (3%)

Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
           + N ++ LI    T G     L  ++EM   G+   ++TYN+L+  + +  +  + + ++
Sbjct: 416 NANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMF 475

Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
             +T  G  P+  TY SL+  Y  A   +  L +Y  MK+ G++ ++  ++ L++ C+  
Sbjct: 476 FLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKE 535

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
           G   +   +F +M    N  PD   +++MI      G V +A ++  EM++ G  P+   
Sbjct: 536 GIKLKE-TLFNEMLQM-NLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKT 593

Query: 300 LTSLIQCY---GKAQRTDDVV---RALNRLPE 325
             SLI  +   GK   T D+V   +A   +PE
Sbjct: 594 YNSLILGHLKEGKLSETKDLVDDMKAKGLIPE 625



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 4/213 (1%)

Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
           PN   F+TLI  Y  AG  D  + + E MK   V+P++IT+N+LL  + +A+R  + + +
Sbjct: 134 PNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCM 193

Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGED-TLSVYREMKEKGMQLSVTLYNTLLAMCA 237
             E+  NG  P+  TY+ +     ++  G    L +YRE   KG+++     + LL    
Sbjct: 194 LNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLC 253

Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
             G  ++A E+ + +       P    +++++      G +  A     +M   G  PN 
Sbjct: 254 KEGKVEKAEEVLKSL-VEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNC 312

Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
               S+I  + + Q  D     + ++   GI P
Sbjct: 313 IAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAP 345



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 8/246 (3%)

Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
           LYD  R E           +++    +  FD  L++++EM  +G +P+ + Y   +    
Sbjct: 18  LYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAV 77

Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
           +         +++ M    + PN   Y  L+    + +   D   ++ EM  + +  +  
Sbjct: 78  KLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRV 137

Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFN 286
            +NTL+      G  D A  + E MK  E  +P   TF+S+++ +C  R ++ EA  M N
Sbjct: 138 TFNTLIDGYCKAGEVDVAIGLRERMK-KEKVEPSIITFNSLLSGLCKAR-RIEEARCMLN 195

Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMT 343
           E+   GF P+ F  + +    G  +  D    AL+   E    G+  D+  C  LLN + 
Sbjct: 196 EIKCNGFVPDGFTYSIIFD--GLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLC 253

Query: 344 QTPKEE 349
           +  K E
Sbjct: 254 KEGKVE 259



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 107/244 (43%), Gaps = 43/244 (17%)

Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
           G+    + ++E MK   V PN+  YN L+  + + KR    + ++ EM+   L PN  T+
Sbjct: 80  GDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTF 139

Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA-------------MCADV-- 239
            +L+  Y +A   +  + +   MK++ ++ S+  +N+LL+             M  ++  
Sbjct: 140 NTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKC 199

Query: 240 -GYTDEAFE---IFEDMKSSEN----------------CQPDSWTFSSMITICSCRGKVS 279
            G+  + F    IF+ +  S++                 + D++T S ++      GKV 
Sbjct: 200 NGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVE 259

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-------- 331
           +AE +   ++E G  P   +  +++  Y +    D  +  + ++   G+ P+        
Sbjct: 260 KAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVI 319

Query: 332 DRFC 335
           D+FC
Sbjct: 320 DKFC 323



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 2/251 (0%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG V++A GL +R + EK       F++L+     A   +    +  E+K  G  P+  
Sbjct: 148 KAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGF 207

Query: 158 TYNNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           TY+ + D + ++         +Y+E    G+  +  T + LL    +    E    V + 
Sbjct: 208 TYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKS 267

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           + E G+     +YNT++     +G  D A    E M+ S   +P+   F+S+I       
Sbjct: 268 LVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQME-SRGLRPNCIAFNSVIDKFCEMQ 326

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
            + +AE    +M+  G  P++     LI  YG+        + L  + E G  P+    G
Sbjct: 327 MIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYG 386

Query: 337 CLLNVMTQTPK 347
            L+N + +  K
Sbjct: 387 SLINCLCKDGK 397



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 1/169 (0%)

Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
           LL     +K   QV  +Y  M   G  P++     ++ +   ++  ++ L +++EM   G
Sbjct: 2   LLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLG 61

Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
            +    +Y   +     +G    A E+FE MK  +   P+ + ++ +I       ++ +A
Sbjct: 62  FRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRK-VVPNVFVYNVLIGGLCKEKRIRDA 120

Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
           E +F EM      PN     +LI  Y KA   D  +    R+ +  + P
Sbjct: 121 EKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEP 169


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 121/251 (48%), Gaps = 11/251 (4%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
           +++G    A G   +   EK    PN   +STLI  Y   G  D   +V++ M + G  P
Sbjct: 178 SKSGKANEALGFLKQM--EKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTP 235

Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
           N+ TY +L++   + +R  +   +  E    GL P+  T+ +++    RA        ++
Sbjct: 236 NVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLF 295

Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICS 273
           R +   G   ++  Y  LL      G  +EAF +F++M+ S   +P+   ++ +I ++C 
Sbjct: 296 RYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRS-TVKPNLVIYTILIDSLCK 354

Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
           C GK+ + + +F+ +++ G +PN++  T+L+    K     +  +   ++ E G TPD  
Sbjct: 355 C-GKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDK- 412

Query: 334 FCGCLLNVMTQ 344
              C  NV+ Q
Sbjct: 413 ---CAYNVIIQ 420



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 138/297 (46%), Gaps = 2/297 (0%)

Query: 97  TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
            R G+ E    L           D ++ S LI  +      D  L+V  ++  +G++P++
Sbjct: 73  VRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSI 132

Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
           +T+  LL+ +    +  QV  +Y +M   GL PN  TY  ++ +  ++    + L   ++
Sbjct: 133 VTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQ 192

Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
           M++ G   +V  Y+TL+      G  DEA  +F D+  S+ C P+ +T++S++       
Sbjct: 193 MEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVF-DLMVSKGCTPNVYTYTSLMNGYCKIE 251

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
           ++ EA  + +E L  G  P++   T++I    +A R     +    +   G TP+    G
Sbjct: 252 RIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYG 311

Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
            LL+ + +    EE   L + +++S  K   V+  +L +   +    K+  ELF+ +
Sbjct: 312 VLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRL 368



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 105/232 (45%), Gaps = 1/232 (0%)

Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
           G ++    LYD       + +   ++ +I     +G  +  L   ++M+ +G  PN++ Y
Sbjct: 146 GKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNY 205

Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
           + L+D      +  + ++++  M   G +PN  TY SL+  Y +    E+ + +  E   
Sbjct: 206 STLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLR 265

Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
           KG+   +  + T+++     G    A ++F  +  +    P+  T+  ++      G + 
Sbjct: 266 KGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYI-CAHGHTPNIMTYGVLLDGLCKHGNLE 324

Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
           EA A+F EM  +  +PNL + T LI    K  +  D     +RL + G+ P+
Sbjct: 325 EAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPN 376



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 109/208 (52%), Gaps = 5/208 (2%)

Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
           FS+++++    G+++  + + +E++ +G++ ++ + + L++      R     ++  ++ 
Sbjct: 69  FSSIVRM----GHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKIL 124

Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
             GL P+  T+ +LL         +  + +Y +M  +G+Q +V  YN ++   +  G  +
Sbjct: 125 KLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKAN 184

Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
           EA    + M+    C P+   +S++I     RG++ EA ++F+ M+  G  PN++  TSL
Sbjct: 185 EALGFLKQMEKV-GCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSL 243

Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
           +  Y K +R ++ V+ L+     G+ PD
Sbjct: 244 MNGYCKIERIEEAVQLLDETLRKGLVPD 271



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/124 (18%), Positives = 56/124 (45%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + GN+E AF L+   +    + +   ++ LI      G       ++  +   G+KPN+ 
Sbjct: 319 KHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVY 378

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  L+  + +     +   ++++M ++G +P+   Y  +++ + + +       +  EM
Sbjct: 379 TYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEM 438

Query: 218 KEKG 221
             +G
Sbjct: 439 VNRG 442


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 138/340 (40%), Gaps = 80/340 (23%)

Query: 99  AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
           AG  + AF +     ++ +  D + +S +I     A   +    ++EEMK  G+ P++ T
Sbjct: 431 AGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYT 490

Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
           Y  L+D+  +A    Q +  + EM  +  +PN  TY SL+ AY +AR   D   ++  M 
Sbjct: 491 YTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMML 550

Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK------------------------- 253
            +G + +V  Y  L+      G  D+A +I+  M+                         
Sbjct: 551 LEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNII 610

Query: 254 -------------------------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288
                                    S   C+P+   + ++I      GK+  A+ +F +M
Sbjct: 611 TYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKM 670

Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFC----- 335
            E G+ PNL+  +SLI    K +R D V++ L+++ E   TP+        D  C     
Sbjct: 671 SERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKT 730

Query: 336 -------------GCLLNVMTQTPKEE----LGKLVECVE 358
                        GC  NV+T T   +    +GK+ +C+E
Sbjct: 731 EEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLE 770



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 1/180 (0%)

Query: 144 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203
           Y EM  +GV  N +  +N    +  A +  +   I  EM   G  P+ +TY+ ++     
Sbjct: 406 YSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCD 465

Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
           A   E    ++ EMK+ G+  SV  Y  L+      G   +A   F++M   +NC P+  
Sbjct: 466 ASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEML-RDNCTPNVV 524

Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
           T++S+I       KV +A  +F  ML  G +PN+   T+LI  + KA + D   +   R+
Sbjct: 525 TYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARM 584



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 19/229 (8%)

Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKA------IGV----------KPNMITYNNL 162
           PN   ++ LI  +  AG  D    +Y  M+       I +           PN+ITY  L
Sbjct: 556 PNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGAL 615

Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
           +D + +A R  +   +   M+ NG  PN   Y +L+  + +    E+   V+ +M E+G 
Sbjct: 616 VDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGY 675

Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
             ++  Y++L+         D   ++   M  + +C P+   ++ MI      GK  EA 
Sbjct: 676 CPNLYTYSSLINSLFKEKRLDLVLKVLSKMLEN-SCTPNVVIYTDMIDGLCKVGKTEEAY 734

Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
            +  +M E G  PN+   T++I  +GK  + +  +     +   G  P+
Sbjct: 735 RLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPN 783



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           + G +E A  ++ +     +  +   +S+LI         D  L V  +M      PN++
Sbjct: 656 KTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVV 715

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
            Y +++D + +  +  +   +  +M + G  PN  TY +++  +G+    E  L +YR+M
Sbjct: 716 IYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDM 775

Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
             KG   +   Y  L+  C   G  DEA  + ++MK +
Sbjct: 776 CSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQT 813



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 4/218 (1%)

Query: 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 206
           +K  G K +  TYN L+    RA +      +++EM+++G   +  T      +  +A  
Sbjct: 196 LKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGR 255

Query: 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
             D LS+   ++++        YN +++   +     EA +I + M+S  +C P+  T+ 
Sbjct: 256 CGDALSL---LEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSI-SCIPNVVTYR 311

Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
            +++ C  +G++   + + + M+  G  PN  +  SL+  Y K++      +   ++ + 
Sbjct: 312 ILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKC 371

Query: 327 GITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 364
           G  P        +  +    +     L+E  EK+ S++
Sbjct: 372 GCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEM 409



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 35/236 (14%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
           +AG    A  L ++   E++  D   ++ ++     A  F   +++ + M++I   PN++
Sbjct: 252 KAGRCGDALSLLEK---EEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVV 308

Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
           TY  LL       +  + K I   M   G  PN   + SL+ AY ++R       ++++M
Sbjct: 309 TYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKM 368

Query: 218 KEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
            + G Q    LYN  + ++C++           E++  S+                    
Sbjct: 369 IKCGCQPGYLLYNIFIGSICSN-----------EELPGSD-------------------- 397

Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
            +  AE  ++EML+ G   N   +++  +C   A + D     +  +   G  PDD
Sbjct: 398 LLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDD 453



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 42/222 (18%)

Query: 98  RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
           + G  E A+ L    + E+    PN   ++ +I  +G  G  + CL +Y +M + G  PN
Sbjct: 726 KVGKTEEAYRLM--LKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPN 783

Query: 156 MITY----------------NNLLDTMGRAKRPWQVKTIYK-----------------EM 182
            ITY                + LLD M +   P  + +  K                 E+
Sbjct: 784 FITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDEL 843

Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT---LYNTLLAMCADV 239
           ++N   P  + Y  L+  + +A   E  L++  E+      L+V    LY +L+   +  
Sbjct: 844 SENESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSP-SLAVANKYLYTSLIESLSHA 902

Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
              D+AFE++  M  ++N  P+  TF  +I   +  GK  EA
Sbjct: 903 SKVDKAFELYASM-INKNVVPELSTFVHLIKGLTRVGKWQEA 943


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.131    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,491,240,350
Number of Sequences: 23463169
Number of extensions: 350307998
Number of successful extensions: 1051990
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7468
Number of HSP's successfully gapped in prelim test: 4419
Number of HSP's that attempted gapping in prelim test: 916062
Number of HSP's gapped (non-prelim): 67936
length of query: 546
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 398
effective length of database: 8,886,646,355
effective search space: 3536885249290
effective search space used: 3536885249290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)