BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009025
(546 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA---------FEIFEDMKSSENCQ 259
+ L +Y E + G+QLS YN LL +C+ E+ F+IF+ M +
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM-IVDKVV 102
Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
P+ TF++ + + A M +M G +P L
Sbjct: 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 9/180 (5%)
Query: 83 KSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA-------- 134
+SP A ++ ++ G+V A LYD AR ++ ++ L+ + A
Sbjct: 23 QSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP 82
Query: 135 -GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
+++++M V PN T+ N P + K+M G+ P +
Sbjct: 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142
Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
Y L + R + V M E + LL + D D+ ++ + ++
Sbjct: 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202
>pdb|3VC5|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Phosphate
pdb|3VC6|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Magnesium And Formate
pdb|4DHG|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|B Chain B, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|C Chain C, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|D Chain D, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
Length = 441
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 139 GCLNVYEE---MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
G N+Y + ++ + V P LL+ G +PW ++TI + +TD G++ TY
Sbjct: 14 GTENLYFQSMLIREVRVTPVAFRDPPLLNAAG-VHQPWALRTIVEVVTDEGITGLGETYG 72
Query: 196 SL-----LRAYGRARYGEDTLS---VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
L +RA G D + +YR + + VT + L + V D F
Sbjct: 73 DLAHLEQVRAAAARLPGLDVYALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFA 132
Query: 248 IFE 250
FE
Sbjct: 133 AFE 135
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 34/171 (19%)
Query: 313 TDDVVRALN-------RLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSK 363
TD ++ LN RL E+ I + L ++T+T E++ +E + + SK
Sbjct: 1 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSK 60
Query: 364 LGYVVKLLLEEQDIEGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCV 409
+VVK ++DI ++ EL I+ D+K N L +
Sbjct: 61 GVFVVKQ--SDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTDLKLFMKNSLSIIST 118
Query: 410 NL-----NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
+L L+E A +E+ + L YT++Q P +WS L LS ALT
Sbjct: 119 HLLQLIKTLVERAA--IEIDVILPGYTNLQKAQPIRWSQFL--LSHAVALT 165
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 34/171 (19%)
Query: 313 TDDVVRALN-------RLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSK 363
TD ++ LN RL E+ I + L ++T+T E++ +E + + SK
Sbjct: 19 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSK 78
Query: 364 LGYVVKLLLEEQDIEGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCV 409
+VVK ++DI ++ EL I+ D+K N L +
Sbjct: 79 GVFVVKQ--SDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIIST 136
Query: 410 NL-----NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
+L L+E A +E+ + L YT +Q P +WS L LS ALT
Sbjct: 137 HLLQLIKTLVERAA--IEIDVILPGYTHLQKAQPIRWSQFL--LSHAVALT 183
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 34/171 (19%)
Query: 313 TDDVVRALN-------RLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSK 363
TD ++ LN RL E+ I + L ++T+T E++ +E + + SK
Sbjct: 19 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSK 78
Query: 364 LGYVVKLLLEEQDIEGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCV 409
+VVK ++DI ++ EL I+ D+K N L +
Sbjct: 79 GVFVVKQ--SDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIIST 136
Query: 410 NL-----NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
+L L+E A +E+ + L YT +Q P +WS L LS ALT
Sbjct: 137 HLLQLIKTLVERAA--IEIDVILPGYTHLQKAQPIRWSQFL--LSHAVALT 183
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 34/171 (19%)
Query: 313 TDDVVRALN-------RLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSK 363
TD ++ LN RL E+ I + L ++T+T E++ +E + + SK
Sbjct: 17 TDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSK 76
Query: 364 LGYVVKLLLEEQDIEGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCV 409
+VVK ++DI ++ EL I+ D+K N L +
Sbjct: 77 GVFVVKQ--SDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIIST 134
Query: 410 NL-----NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
+L L+E A +E+ + L YT +Q P +WS L LS ALT
Sbjct: 135 HLLQLIKTLVERAA--IEIDVILPGYTHLQKAQPIRWSQFL--LSHAVALT 181
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 34/171 (19%)
Query: 313 TDDVVRALN-------RLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSK 363
TD ++ LN RL E+ I + L ++T+T E++ +E + + SK
Sbjct: 19 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSK 78
Query: 364 LGYVVKLLLEEQDIEGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCV 409
+VVK ++DI ++ EL I+ D+K N L +
Sbjct: 79 GVFVVKQ--SDEDINTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIIST 136
Query: 410 NL-----NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
+L L+E A +E+ + L YT +Q P +WS L LS ALT
Sbjct: 137 HLLQLIKTLVERAA--IEIDVILPGYTHLQKAQPIRWSQFL--LSHAVALT 183
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 321 NRLPELGITPDDRFCGCL--LNVMTQTPKEELGKLVECVEKSNSKLGY-VVKLLLEEQDI 377
RL E+ I + L ++T+T EL K++ +EK + +L V+ + ++DI
Sbjct: 32 QRLSEVDIQASIAYAKALEKAGILTKT---ELEKILSGLEKISEELSKGVIVVTQSDEDI 88
Query: 378 EGDFKKEATELFNSIS--------------KDVKKAYCNCLIDLCVNL-----NLLENAC 418
+ ++ EL I+ D+K N L + +L L+E A
Sbjct: 89 QTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAA 148
Query: 419 KLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
+E+ + L YT +Q P +WS L LS ALT
Sbjct: 149 --IEIDVILPGYTHLQKAQPIRWSQFL--LSHAVALT 181
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA---------FEIFEDMKSSENCQ 259
+ L +Y E + G+QLS YN LL +C+ E+ F+IF+ +
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK-QXIVDKVV 102
Query: 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
P+ TF++ + + A + G +P L
Sbjct: 103 PNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRL 140
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 173 WQVKTIYKEMT-------DNGLSPNWNTYASLLRAYGRARYGEDTLS-VYREMKEKGMQL 224
W + +KE+ D GL+P+ +YA+ L+ GR T+ +M ++G++L
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 225 SVTLYNTLLA 234
LL+
Sbjct: 235 QALFTAVLLS 244
>pdb|1M5W|A Chain A, 1.96 A Crystal Structure Of Pyridoxine 5'-Phosphate
Synthase In Complex With 1-Deoxy-D-Xylulose Phosphate
pdb|1M5W|B Chain B, 1.96 A Crystal Structure Of Pyridoxine 5'-Phosphate
Synthase In Complex With 1-Deoxy-D-Xylulose Phosphate
pdb|1M5W|C Chain C, 1.96 A Crystal Structure Of Pyridoxine 5'-Phosphate
Synthase In Complex With 1-Deoxy-D-Xylulose Phosphate
pdb|1M5W|D Chain D, 1.96 A Crystal Structure Of Pyridoxine 5'-Phosphate
Synthase In Complex With 1-Deoxy-D-Xylulose Phosphate
pdb|1M5W|E Chain E, 1.96 A Crystal Structure Of Pyridoxine 5'-Phosphate
Synthase In Complex With 1-Deoxy-D-Xylulose Phosphate
pdb|1M5W|F Chain F, 1.96 A Crystal Structure Of Pyridoxine 5'-Phosphate
Synthase In Complex With 1-Deoxy-D-Xylulose Phosphate
pdb|1M5W|G Chain G, 1.96 A Crystal Structure Of Pyridoxine 5'-Phosphate
Synthase In Complex With 1-Deoxy-D-Xylulose Phosphate
pdb|1M5W|H Chain H, 1.96 A Crystal Structure Of Pyridoxine 5'-Phosphate
Synthase In Complex With 1-Deoxy-D-Xylulose Phosphate
Length = 243
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 35/165 (21%)
Query: 368 VKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLI-------------DLCVNLNLL 414
V++L + D + + TE +I+ + K +C CL+ D+ + +
Sbjct: 58 VRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFC-CLVPEKRQEVTTEGGLDVAGQRDKM 116
Query: 415 ENACK-LLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWI-NDLSKALESGE 472
+ACK L + G+ + ++ D + +GA +H D E +
Sbjct: 117 RDACKRLADAGIQVSLFIDADEEQIKAAA------EVGAPFIEIHTGCYADAKTDAEQAQ 170
Query: 473 EFPPL-----------LGINTGHGKHKYSDKGLASVFESHLKELN 506
E + L +N GHG ++ K +A++ E H ELN
Sbjct: 171 ELARIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMH--ELN 213
>pdb|1HO1|A Chain A, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase
pdb|1HO1|B Chain B, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase
pdb|1HO1|C Chain C, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase
pdb|1HO1|D Chain D, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase
pdb|1HO4|A Chain A, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase In
Complex With Pyridoxine 5'-Phosphate And Inorganic
Phosphate
pdb|1HO4|B Chain B, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase In
Complex With Pyridoxine 5'-Phosphate And Inorganic
Phosphate
pdb|1HO4|C Chain C, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase In
Complex With Pyridoxine 5'-Phosphate And Inorganic
Phosphate
pdb|1HO4|D Chain D, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase In
Complex With Pyridoxine 5'-Phosphate And Inorganic
Phosphate
pdb|1IXN|A Chain A, Enzyme-Substrate Complex Of Pyridoxine 5'-Phosphate
Synthase
pdb|1IXN|B Chain B, Enzyme-Substrate Complex Of Pyridoxine 5'-Phosphate
Synthase
pdb|1IXN|C Chain C, Enzyme-Substrate Complex Of Pyridoxine 5'-Phosphate
Synthase
pdb|1IXN|D Chain D, Enzyme-Substrate Complex Of Pyridoxine 5'-Phosphate
Synthase
pdb|1IXO|A Chain A, Enzyme-Analogue Substrate Complex Of Pyridoxine
5'-Phosphate Synthase
pdb|1IXO|B Chain B, Enzyme-Analogue Substrate Complex Of Pyridoxine
5'-Phosphate Synthase
pdb|1IXO|C Chain C, Enzyme-Analogue Substrate Complex Of Pyridoxine
5'-Phosphate Synthase
pdb|1IXO|D Chain D, Enzyme-Analogue Substrate Complex Of Pyridoxine
5'-Phosphate Synthase
pdb|1IXP|A Chain A, Enzyme-Phosphate Complex Of Pyridoxine 5'-Phosphate
Synthase
pdb|1IXP|B Chain B, Enzyme-Phosphate Complex Of Pyridoxine 5'-Phosphate
Synthase
pdb|1IXP|C Chain C, Enzyme-Phosphate Complex Of Pyridoxine 5'-Phosphate
Synthase
pdb|1IXP|D Chain D, Enzyme-Phosphate Complex Of Pyridoxine 5'-Phosphate
Synthase
pdb|1IXQ|A Chain A, Enzyme-phosphate2 Complex Of Pyridoxine 5'-phosphate
Synthase
pdb|1IXQ|B Chain B, Enzyme-phosphate2 Complex Of Pyridoxine 5'-phosphate
Synthase
pdb|1IXQ|C Chain C, Enzyme-phosphate2 Complex Of Pyridoxine 5'-phosphate
Synthase
pdb|1IXQ|D Chain D, Enzyme-phosphate2 Complex Of Pyridoxine 5'-phosphate
Synthase
Length = 242
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 35/165 (21%)
Query: 368 VKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLI-------------DLCVNLNLL 414
V++L + D + + TE +I+ + K +C CL+ D+ + +
Sbjct: 57 VRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFC-CLVPEKRQEVTTEGGLDVAGQRDKM 115
Query: 415 ENACK-LLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWI-NDLSKALESGE 472
+ACK L + G+ + ++ D + +GA +H D E +
Sbjct: 116 RDACKRLADAGIQVSLFIDADEEQIKAAA------EVGAPFIEIHTGCYADAKTDAEQAQ 169
Query: 473 EFPPL-----------LGINTGHGKHKYSDKGLASVFESHLKELN 506
E + L +N GHG ++ K +A++ E H ELN
Sbjct: 170 ELARIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMH--ELN 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,262,941
Number of Sequences: 62578
Number of extensions: 672438
Number of successful extensions: 1484
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1474
Number of HSP's gapped (non-prelim): 24
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)