BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009025
(546 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/446 (73%), Positives = 386/446 (86%), Gaps = 2/446 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAGNV+MA LYDRAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++
Sbjct: 257 RAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLV 316
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
YN L+D+MGRAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREM
Sbjct: 317 IYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREM 376
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KEKG+ L+V LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+
Sbjct: 377 KEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGR 436
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
VSEAEA +M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGC
Sbjct: 437 VSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGC 496
Query: 338 LLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDV 396
LLNVMTQTP EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DV
Sbjct: 497 LLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDV 556
Query: 397 KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTA 456
KKAY NCLIDLCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTA
Sbjct: 557 KKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTA 616
Query: 457 LHIWINDLSK-ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
LH+W+NDLS+ ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDK
Sbjct: 617 LHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDK 676
Query: 516 VGWFLTTEAAAKSWLESRSSLVSVPA 541
VGWFLTT AAK+WLESR S V A
Sbjct: 677 VGWFLTTSVAAKAWLESRRSAGGVSA 702
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 169/365 (46%), Gaps = 48/365 (13%)
Query: 10 CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
C+L S PK R+F S+ + S F+S+ LQ VS+QE + + P
Sbjct: 21 CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79
Query: 69 KTGSSPKSYIWVNPKSPRASKLKEKSYDTRAGN-VEMAFGLYDRARNEKWRID------- 120
+ +S KSY+WVNPKSPRAS+L+ KSYD+R + +++A L NE D
Sbjct: 80 EPTAS-KSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLDACKPNEADVCDVITGFGG 138
Query: 121 ----PNAFSTL--------------------------------IKLYGTAGNFDGCLNVY 144
+A TL +K++ + + + ++
Sbjct: 139 KLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLF 198
Query: 145 EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204
+EM G+KP+ T+ ++ + P + +++M+ G P+ T A+++ AYGRA
Sbjct: 199 DEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRA 258
Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
+ LS+Y + + ++ ++TL+ + G D I+E+MK+ +P+
Sbjct: 259 GNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL-GVKPNLVI 317
Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
++ +I + +A+ ++ +++ GF PN +L++ YG+A+ DD + +
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMK 377
Query: 325 ELGIT 329
E G++
Sbjct: 378 EKGLS 382
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/438 (41%), Positives = 277/438 (63%), Gaps = 3/438 (0%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
+++G VE LY+RA W+ D AFS L K++G AG++DG V +EMK++ VKPN+
Sbjct: 267 SKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNV 326
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+ YN LL+ MGRA +P ++++ EM + GL+PN T +L++ YG+AR+ D L ++ E
Sbjct: 327 VVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEE 386
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
MK K + LYNTLL MCAD+G +EA +F DMK S C+PD++++++M+ I G
Sbjct: 387 MKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGG 446
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
K +A +F EML+AG + N+ T L+QC GKA+R DDVV + + G+ PDDR CG
Sbjct: 447 KAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCG 506
Query: 337 CLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
CLL+VM E+ K++ C+E++N KL V L+++E+ K+E + N+ +
Sbjct: 507 CLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQVE 566
Query: 396 VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALT 455
++ +CNCLID+C N E A +LL LG +Y + +++ +WSL ++SLS+GAA T
Sbjct: 567 ARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAET 626
Query: 456 ALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDK 515
AL W+ L+ ++ EE P L TG G H++S +GLA+ F HL++L+APF S D+
Sbjct: 627 ALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DR 684
Query: 516 VGWFLTTEAAAKSWLESR 533
G F+ T+ SWLES+
Sbjct: 685 PGIFVATKEDLVSWLESK 702
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 16/297 (5%)
Query: 146 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205
EM GV+ + ITY+ ++ R + ++ M GL P+ TY+++L Y ++
Sbjct: 211 EMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSG 270
Query: 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265
E+ LS+Y G + ++ L M + G D + ++MKS + +P+ +
Sbjct: 271 KVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSM-DVKPNVVVY 329
Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
++++ GK A ++FNEMLEAG PN LT+L++ YGKA+ D ++ +
Sbjct: 330 NTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKA 389
Query: 326 LGITPDDRFCGCLLNVMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 380
D LLN+ EE + E V+ Y L +I G
Sbjct: 390 KKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAML-----NIYGS 444
Query: 381 FKK--EATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432
K +A ELF + K V C CL+ +++ + +L + V D
Sbjct: 445 GGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPD 501
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 124/504 (24%), Positives = 220/504 (43%), Gaps = 75/504 (14%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
+ G +++AF + A+ RI PN ++ST+I + AG FD LN++ EM+ +G+ +
Sbjct: 386 KGGQMDLAFEIL--AQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALD 443
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
++YN LL + R + I +EM G+ + TY +LL YG+ ++ V+
Sbjct: 444 RVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFT 503
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
EMK + + ++ Y+TL+ + G EA EIF + KS+ + D +S++I
Sbjct: 504 EMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA-GLRADVVLYSALIDALCKN 562
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV------------------ 317
G V A ++ +EM + G PN+ S+I +G++ D
Sbjct: 563 GLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSAL 622
Query: 318 ------RALNRLPELGITPDDRFC----------GCLLNVMTQTPK-------------- 347
R + +L ++R C+L V + +
Sbjct: 623 TETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAIL 682
Query: 348 ---------EELGKLVECVEKSNSKL-GYVVKLLLEEQDIEGDFKKEATELF---NSISK 394
E+ L+E + ++K+ G V LL+ +++ + +A LF N +
Sbjct: 683 NACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQRE---NVWLQAQSLFDKVNEMDG 739
Query: 395 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454
A+ N L D+ + A + G + +V+ ++ S S L L +S GAA
Sbjct: 740 STASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWENVWSDS----CLDLHLMSSGAAR 795
Query: 455 TALHIWINDLSKALESGEEFPPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDS 512
+H W+ ++ + G E P +L I TG GKH D L E L+ ++APFH S
Sbjct: 796 AMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLS 855
Query: 513 PDKVGWFLTTEAAAKSWLESRSSL 536
+G F ++ + +WL ++L
Sbjct: 856 KCNMGRFTSSGSVVATWLRESATL 879
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 156/331 (47%), Gaps = 8/331 (2%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R G V +A +++ A + AFS LI YG +G + ++V+ MK G++PN++
Sbjct: 245 RYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLV 304
Query: 158 TYNNLLDTMGRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
TYN ++D G+ + QV + EM NG+ P+ T+ SLL R E +++ E
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M + ++ V YNTLL G D AFEI M + P+ ++S++I + G
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP-VKRIMPNVVSYSTVIDGFAKAG 423
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
+ EA +F EM G + +L+ Y K R+++ + L + +GI D
Sbjct: 424 RFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYN 483
Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 395
LL + K +E+ K+ +++ + + L + +G KEA E+F
Sbjct: 484 ALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543
Query: 396 VKKA---YCNCLID-LCVNLNLLENACKLLE 422
+A + LID LC N L+ +A L++
Sbjct: 544 GLRADVVLYSALIDALCKN-GLVGSAVSLID 573
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 1/235 (0%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
+R G E A L+D N + D +++TL+ G D + +M + PN+
Sbjct: 350 SRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNV 409
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
++Y+ ++D +A R + ++ EM G++ + +Y +LL Y + E+ L + RE
Sbjct: 410 VSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILRE 469
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M G++ V YN LL G DE ++F +MK E+ P+ T+S++I S G
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK-REHVLPNLLTYSTLIDGYSKGG 528
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
EA +F E AG ++ + ++LI K V ++ + + GI+P+
Sbjct: 529 LYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPN 583
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 81/170 (47%)
Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
++ T+GR + K I++ G +++L+ AYGR+ E+ +SV+ MKE G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
++ ++ YN ++ C G + F D QPD TF+S++ +CS G A
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAA 358
Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+F+EM E ++F +L+ K + D L ++P I P+
Sbjct: 359 RNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPN 408
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 117/252 (46%), Gaps = 12/252 (4%)
Query: 105 AFGLYD------RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
A G Y+ R +NE+ ++ STL G G ++E A G +
Sbjct: 215 AVGFYEFAVKRERRKNEQGKLASAMISTL----GRYGKVTIAKRIFETAFAGGYGNTVYA 270
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREM 217
++ L+ GR+ + +++ M + GL PN TY +++ A G+ + + EM
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ G+Q +N+LLA+C+ G + A +F++M ++ + D +++++++ G+
Sbjct: 331 QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEM-TNRRIEQDVFSYNTLLDAICKGGQ 389
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
+ A + +M PN+ +++I + KA R D+ + + LGI D
Sbjct: 390 MDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNT 449
Query: 338 LLNVMTQTPKEE 349
LL++ T+ + E
Sbjct: 450 LLSIYTKVGRSE 461
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/423 (23%), Positives = 205/423 (48%), Gaps = 18/423 (4%)
Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
++++ +++++K+Y ++ + VY+ +K G++P+ TYN L+ R +RP +
Sbjct: 923 FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982
Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
+ ++M + GL P +TY SL+ A+G+ + E ++ E+ KG++L + Y+T++ +
Sbjct: 983 LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042
Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
D G +A ++ + MK++ +P T ++ S G EAE + + + + E
Sbjct: 1043 RDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELT 1101
Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT-QTPKEELGKLVE 355
+S+I Y +++ + + L + + G+ PD R C + + K E+ L++
Sbjct: 1102 TLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLK 1161
Query: 356 CVEKSNSKLGYVVKLL-----LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 410
+E L ++LL L +++G F+K SI + + N L++L
Sbjct: 1162 ALEDIGFDLP--IRLLAGRPELLVSEVDGWFEK-----LKSIEDNAALNFVNALLNLLWA 1214
Query: 411 LNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA-L 468
L A + +LG+ +++ D+ + W + LS GAAL AL +W++ + A L
Sbjct: 1215 FELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVALTLWLDHMQDASL 1274
Query: 469 ESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKS 528
E E P + + TG +Y+ L ++ L E+ +PF + G + + +
Sbjct: 1275 EGYPESPKSVVLITGTA--EYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSLRM 1332
Query: 529 WLE 531
WL+
Sbjct: 1333 WLK 1335
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 122/241 (50%)
Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
+A L D RN R D ++TL+ N DG + V+E+M+A +P++ TYN ++
Sbjct: 280 LAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMI 339
Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
GR + + ++ E+ G P+ TY SLL A+ R R E VY++M++ G
Sbjct: 340 SVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG 399
Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283
YNT++ M G D A ++++DMK PD+ T++ +I + EA A
Sbjct: 400 KDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAA 459
Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
+ +EML+ G +P L ++LI Y KA + ++ + + G PD+ +L+V+
Sbjct: 460 LMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519
Query: 344 Q 344
+
Sbjct: 520 R 520
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 3/232 (1%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
++ +I+ YG + +V ++ G P++ T+N+L+ + + + I+ M
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
+G SP + LL A E+ V E+++ G ++S + +L A G
Sbjct: 815 RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTS 302
E +I+ MK++ P + MI + C+GK V +AE M +EM EA F+ L + S
Sbjct: 875 EVKKIYSSMKAA-GYLPTIRLYRMMIELL-CKGKRVRDAEIMVSEMEEANFKVELAIWNS 932
Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
+++ Y + V+ R+ E G+ PD+ L+ + + + E G L+
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLL 984
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/160 (18%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
+E A L++ ++ ++D + + T++K+ +G+ + + MK G++P + T +
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHL 1072
Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
L+ + + P + + + + D + Y+S++ AY R++ + EMK++G
Sbjct: 1073 LMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEG 1132
Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
++ ++ + + ++ E E+ +K+ E+ D
Sbjct: 1133 LEPDHRIWTCFVRAAS---FSKEKIEVMLLLKALEDIGFD 1169
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
S T+Y TLL C + EA ++F D++ S C+ SM+ + G A +
Sbjct: 680 SSTMYETLLHCCVANEHYAEASQVFSDLRLS-GCEASESVCKSMVVVYCKLGFPETAHQV 738
Query: 285 FNEMLEAGFE----PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
N+ GF P + T +I+ YGK + + L + G TPD + L++
Sbjct: 739 VNQAETKGFHFACSP---MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMS 795
Query: 341 VMTQ 344
Q
Sbjct: 796 AYAQ 799
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/444 (22%), Positives = 199/444 (44%), Gaps = 16/444 (3%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RA + A ++++ + + D + TLI ++ AG D +++Y+ M+A G+ P+
Sbjct: 411 RANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTF 470
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY+ +++ +G+A ++ EM D G +PN TY ++ + +AR ++ L +YR+M
Sbjct: 471 TYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDM 530
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ G + Y+ ++ + GY +EA +F +M+ +N PD + ++ + G
Sbjct: 531 QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQ-QKNWIPDEPVYGLLVDLWGKAGN 589
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
V +A + ML AG PN+ SL+ + + + + L + LG+ P +
Sbjct: 590 VEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTL 649
Query: 338 LLNVMTQ-TPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEAT---ELF 389
LL+ T K ++G + + + G+ + L + G + + A +L
Sbjct: 650 LLSCCTDGRSKLDMGFCGQLMAST----GHPAHMFLLKMPAAGPDGENVRNHANNFLDLM 705
Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
+S ++ K+ + ++D E A + E+ V+ D ++ +S + W ++L +
Sbjct: 706 HSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVM 765
Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELN 506
S G A+TAL + K + + P + I TG G+ + E L
Sbjct: 766 SEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFG 825
Query: 507 APFHDSPDKVGWFLTTEAAAKSWL 530
+PF G F+ + WL
Sbjct: 826 SPFFTESGNSGCFVGSGEPLNRWL 849
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 162/369 (43%), Gaps = 21/369 (5%)
Query: 83 KSPRASKLKEKSYDTRAGNVEMAFGLYDRAR----------NEKWRIDPNAFSTLIKLYG 132
K P + L + Y VE + R R N RID + ++K
Sbjct: 283 KGPSGTALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMN 342
Query: 133 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192
GN G Y + G K + TY ++ +GRAK+ + + EM +G PN
Sbjct: 343 DYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTV 400
Query: 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
TY L+ +YGRA Y + ++V+ +M+E G + Y TL+ + A G+ D A ++++ M
Sbjct: 401 TYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRM 460
Query: 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
++ PD++T+S +I G + A +F EM++ G PNL ++ + KA+
Sbjct: 461 QAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARN 519
Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV--ECVEKS----NSKLGY 366
+ ++ + G PD ++ V+ E + V E +K+ G
Sbjct: 520 YQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGL 579
Query: 367 VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426
+V L + ++E ++ L + +V CN L+ + +N + A +LL+ L
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT--CNSLLSTFLRVNKIAEAYELLQNMLA 637
Query: 427 LEVYTDIQS 435
L + +Q+
Sbjct: 638 LGLRPSLQT 646
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/444 (22%), Positives = 195/444 (43%), Gaps = 16/444 (3%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RA ++ A ++++ + D + TLI ++ AG D +++Y+ M+ G+ P+
Sbjct: 406 RANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTF 465
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY+ +++ +G+A ++ EM G +PN T+ ++ + +AR E L +YR+M
Sbjct: 466 TYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDM 525
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ G Q Y+ ++ + G+ +EA +F +M+ +N PD + ++ + G
Sbjct: 526 QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQ-RKNWVPDEPVYGLLVDLWGKAGN 584
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
V +A + ML+AG PN+ SL+ + + R + L + LG+ P +
Sbjct: 585 VDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTL 644
Query: 338 LLNVMTQTPKE-ELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-------DFKKEATELF 389
LL+ T ++G + + S G+ + L + G D +
Sbjct: 645 LLSCCTDARSNFDMGFCGQLMAVS----GHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFM 700
Query: 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSL 448
+S ++ K+ + ++D L E A + E+ VY D ++ +S + W ++L +
Sbjct: 701 HSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVM 760
Query: 449 SLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELN 506
S G A+ AL + K + + P + I TG G+ + E L N
Sbjct: 761 SEGTAVIALSRTLAWFRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFN 820
Query: 507 APFHDSPDKVGWFLTTEAAAKSWL 530
PF G F+ + K+WL
Sbjct: 821 FPFFTENGNSGCFVGSGEPLKNWL 844
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 230 NTLLAMCADVGYTDEAFEI--FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
+T M ++G + EI D + C+P++ T++ +I + EA +FN+
Sbjct: 360 HTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQ 419
Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342
M EAG EP+ +LI + KA D + R+ E G++PD ++N +
Sbjct: 420 MQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCL 474
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
A F +K + D T+++M+ + E + +EM+ G +PN LI
Sbjct: 342 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLI 401
Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
YG+A + + N++ E G P DR C L
Sbjct: 402 HSYGRANYLKEAMNVFNQMQEAGCEP-DRVTYCTL 435
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 36/268 (13%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAG VE A +++ RN + + F+ IK+YG G F + +++E+ G+ P+++
Sbjct: 396 RAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIV 455
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T+N LL G+ +V ++KEM G P T+ +L+ AY R E ++VYR M
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS---------- 267
+ G+ ++ YNT+LA A G +++ ++ +M+ C+P+ T+ S
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR-CKPNELTYCSLLHAYANGKE 574
Query: 268 -------------------------MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
++ +CS + EAE F+E+ E GF P++ L S
Sbjct: 575 IGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNS 634
Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
++ YG+ Q L+ + E G TP
Sbjct: 635 MVSIYGRRQMVAKANGVLDYMKERGFTP 662
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 1/237 (0%)
Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
L ++ +++ D ++TLI V+EEMKA G + +TYN LLD G
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325
Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
++ RP + + EM NG SP+ TY SL+ AY R ++ + + +M EKG + V
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385
Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
Y TLL+ G + A IFE+M+++ C+P+ TF++ I + RGK +E +F+E
Sbjct: 386 TYTTLLSGFERAGKVESAMSIFEEMRNA-GCKPNICTFNAFIKMYGNRGKFTEMMKIFDE 444
Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
+ G P++ +L+ +G+ +V + G P+ L++ ++
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSR 501
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 142/306 (46%), Gaps = 40/306 (13%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF------------DGC----- 140
+ G V A +++ + + + +D ++++LI + +G + DGC
Sbjct: 185 KEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLI 244
Query: 141 -----LNVY--------------EEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
LNV+ E+MK+ G+ P+ TYN L+ R + +++E
Sbjct: 245 TYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEE 304
Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
M G S + TY +LL YG++ ++ + V EM G S+ YN+L++ A G
Sbjct: 305 MKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGM 364
Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
DEA E+ M + + +PD +T++++++ GKV A ++F EM AG +PN+
Sbjct: 365 LDEAMELKNQM-AEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFN 423
Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSN 361
+ I+ YG + ++++ + + G++PD LL V Q + V V K
Sbjct: 424 AFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQN---GMDSEVSGVFKEM 480
Query: 362 SKLGYV 367
+ G+V
Sbjct: 481 KRAGFV 486
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 90/170 (52%), Gaps = 2/170 (1%)
Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
++ +G+ R ++ + ++G S + +Y SL+ A+ + + ++V+++M+E G
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238
Query: 222 MQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
+ ++ YN +L + +G ++ + E MKS + PD++T++++IT C E
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS-DGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
A +F EM AGF + +L+ YGK+ R + ++ LN + G +P
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSP 347
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 44/274 (16%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
+R G+ E A +Y R + D + ++T++ G ++ V EM+ KPN
Sbjct: 500 SRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559
Query: 157 ITYNNLLDTMGRAK-------------------RPWQVKTI----------------YKE 181
+TY +LL K R +KT+ + E
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSE 619
Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CAD 238
+ + G SP+ T S++ YGR + V MKE+G S+ YN+L+ M AD
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSAD 679
Query: 239 VGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
G ++E EI ++ +PD +++++I ++ +A +F+EM +G P++
Sbjct: 680 FGKSEEILREIL-----AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDV 734
Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ I Y ++ + + + + G P+
Sbjct: 735 ITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 82 PKSPRA-SKLKEKSYDT-------------RAGNVEMAFGLYDRARNEKWRIDPNAFSTL 127
P++ RA S+LKE+ + R V A G+ D + + +++L
Sbjct: 611 PEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSL 670
Query: 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187
+ ++ + +F + E+ A G+KP++I+YN ++ R R I+ EM ++G+
Sbjct: 671 MYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGI 730
Query: 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
P+ TY + + +Y E+ + V R M + G + + YN+++ + DEA
Sbjct: 731 VPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKL 790
Query: 248 IFEDMKSSENCQP 260
ED+++ + P
Sbjct: 791 FVEDLRNLDPHAP 803
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 15/198 (7%)
Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL-SVYREMKEKGMQL 224
+G+++ P + K + +GLSP +LR+ + L SV E+ E
Sbjct: 78 IGKSRDP----NLGKPWSYHGLSPQGQ---QVLRSLIEPNFDSGQLDSVLSELFEPFKDK 130
Query: 225 SVTLYNTLLAMCADVGYT---DEAFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVS 279
+ + LLA +G+ D A F+ ++ Q D+ + +I++ G+VS
Sbjct: 131 PESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVS 190
Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
A MFN + E GF +++ TSLI + + R + V ++ E G P +L
Sbjct: 191 SAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVIL 250
Query: 340 NVMTQ--TPKEELGKLVE 355
NV + TP ++ LVE
Sbjct: 251 NVFGKMGTPWNKITSLVE 268
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 8/299 (2%)
Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
V+ A GL+ +KW P+A + LI +G AG + +N+ ++M + P+ TY
Sbjct: 159 VDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTY 216
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
NNL++ G + + + K+MTDNG+ P+ T+ +L AY R LS + MK
Sbjct: 217 NNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG 276
Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKV 278
++ T +N ++ + +G + +A ++F M+ C+PD TF+S++ + S +G++
Sbjct: 277 AKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEI 336
Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338
A+F M+ G +PN+ +L+ Y + + L + + GI PD CL
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396
Query: 339 LNVMTQTPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKD 395
LN ++ + K V + + + VV L++ G F EA E+F + +D
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQD 454
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 141/356 (39%), Gaps = 110/356 (30%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
++ G A L++ R ++ P+ F++++ LY G + C V+E M A G+KP
Sbjct: 294 SKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKP 353
Query: 155 NMITYNNL-----------------------------------LDTMGRAKRPWQVKTIY 179
N+++YN L L++ GR+++P + K ++
Sbjct: 354 NIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVF 413
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA-- 237
M PN TY +L+ AYG + + + ++R+M++ G++ +V TLLA C+
Sbjct: 414 LMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 473
Query: 238 ---------------------------------DVGYTDEAFEIFEDMKSSENCQPDSWT 264
+ ++A +++ M+ + + DS T
Sbjct: 474 KKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMR-KKKVKADSVT 532
Query: 265 FSSMITICSCR------------------------------------GKVSEAEAMFNEM 288
F+ +I+ SCR G+V+EAE++FN+M
Sbjct: 533 FTILIS-GSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM 591
Query: 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
AG EP++ TS++ Y +++ + GI PD C L+ +
Sbjct: 592 KMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNK 647
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 102/226 (45%), Gaps = 3/226 (1%)
Query: 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
+ ++ Y + + L+ +E MK V+P+ T+N ++ + + + Q ++ M +
Sbjct: 252 NIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMRE 311
Query: 185 NGLS--PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
P+ T+ S++ Y E+ +V+ M +G++ ++ YN L+ A G +
Sbjct: 312 KRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMS 371
Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
A + D+K + PD +++ ++ + +A+ +F M + +PN+ +
Sbjct: 372 GTALSVLGDIKQN-GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNA 430
Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
LI YG + V ++ + GI P+ LL +++ K+
Sbjct: 431 LIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 476
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/212 (17%), Positives = 91/212 (42%), Gaps = 1/212 (0%)
Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
+S+++ Y G +++ +MK G +P++I Y ++L +++ + ++ EM
Sbjct: 567 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEM 626
Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
NG+ P+ ++L+RA+ + + + M+EK + + ++ + + C +
Sbjct: 627 EANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEW 686
Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
A ++ + M T + M+ + GKV +F +++ +G NL
Sbjct: 687 KRAIDLIQMMDPYLPSLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAI 745
Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
L++ + L + GI P ++
Sbjct: 746 LLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQM 777
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 5/221 (2%)
Query: 112 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171
A++ ++ A+++ I Y A + + +Y+ M+ VK + +T+ L+ R +
Sbjct: 486 AQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSK 545
Query: 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231
+ + KEM D + Y+S+L AY + + S++ +MK G + V Y +
Sbjct: 546 YPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTS 605
Query: 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291
+L +A E+F +M+++ +PDS S+++ + G+ S + + M E
Sbjct: 606 MLHAYNASEKWGKACELFLEMEAN-GIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREK 664
Query: 292 GFE---PNLFVLTSLIQCYGKAQRTDDVVRALN-RLPELGI 328
F + S + +R D+++ ++ LP L I
Sbjct: 665 EIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSI 705
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 66/158 (41%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
A +E A LY R +K + D F+ LI + ++ +EM+ + +
Sbjct: 508 AAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEV 567
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
Y+++L + + + ++I+ +M G P+ Y S+L AY + ++ EM+
Sbjct: 568 YSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEME 627
Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
G++ + L+ G F + + M+ E
Sbjct: 628 ANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKE 665
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/159 (16%), Positives = 68/159 (42%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
++ G V A ++++ + D A+++++ Y + + ++ EM+A G++P+
Sbjct: 576 SKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDS 635
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
I + L+ + +P V + M + + + + A + + + + +
Sbjct: 636 IACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQM 695
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
M LS+ L N +L + G + ++F + +S
Sbjct: 696 MDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIAS 734
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 4/221 (1%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D + +I +Y AGN++ V+ M GV + +TYN+L+ K +V IY
Sbjct: 246 DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIY 302
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
+M + + P+ +YA L++AYGRAR E+ LSV+ EM + G++ + YN LL A
Sbjct: 303 DQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 362
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
G ++A +F+ M+ + PD W++++M++ + AE F + GFEPN+
Sbjct: 363 GMVEQAKTVFKSMR-RDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421
Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
+LI+ Y KA + ++ ++ GI + +++
Sbjct: 422 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 115/241 (47%), Gaps = 7/241 (2%)
Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
W F LI YG GNF+G V + +G PN+I+Y L+++ GR + +
Sbjct: 135 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 194
Query: 177 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
I++ M +G P+ TY +L+ + + + E+ + K+ ++ +Y+ ++
Sbjct: 195 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 254
Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
M G ++A ++F M + + T++S+++ + +VS+ ++++M +
Sbjct: 255 YMYKKAGNYEKARKVFSSM-VGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDI 310
Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353
+P++ LI+ YG+A+R ++ + + + G+ P + LL+ + E K
Sbjct: 311 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 370
Query: 354 V 354
V
Sbjct: 371 V 371
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 114/272 (41%), Gaps = 38/272 (13%)
Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
+YD+ + + D +++ LIK YG A + L+V+EEM GV+P YN LLD
Sbjct: 301 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 360
Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
+ Q KT++K M + + P+ +Y ++L AY A E ++ +K G + ++
Sbjct: 361 ISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIV 420
Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287
Y TL+ A ++ E++E M+ S
Sbjct: 421 TYGTLIKGYAKANDVEKMMEVYEKMRLS-------------------------------- 448
Query: 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
G + N +LT+++ G+ + + + G+ PD + LL++ + +
Sbjct: 449 ----GIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSL--ASTQ 502
Query: 348 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
+EL + E N + ++ + D EG
Sbjct: 503 DELEEAKELTGIRNETATIIARVYGSDDDEEG 534
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 75/150 (50%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
+G VE A ++ R ++ D +++T++ Y A + +G ++ +K G +PN++T
Sbjct: 362 SGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
Y L+ +A ++ +Y++M +G+ N +++ A GR + L Y+EM+
Sbjct: 422 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEME 481
Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
G+ N LL++ + +EA E+
Sbjct: 482 SCGVPPDQKAKNVLLSLASTQDELEEAKEL 511
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 116/235 (49%), Gaps = 2/235 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNM 156
R G E + L DR +NEK ++T+I G +++G L ++ EM+ G++P++
Sbjct: 188 RNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDI 247
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+TYN LL + + +++ M D G+ P+ TY+ L+ +G+ R E + E
Sbjct: 248 VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGE 307
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M G +T YN LL A G EA +F M+++ C P++ T+S ++ + G
Sbjct: 308 MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSG 366
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ + +F EM + +P+ LI+ +G+ +VV + + E I PD
Sbjct: 367 RYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPD 421
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/436 (21%), Positives = 186/436 (42%), Gaps = 54/436 (12%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
++G+++ A G++ + + + N +S L+ L+G +G +D ++ EMK+ P+
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
TYN L++ G +V T++ +M + + P+ TY ++ A G+ ED + +
Sbjct: 388 ATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQY 447
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M + S Y ++ +EA F M P TF S++ + G
Sbjct: 448 MTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEV-GSNPSIETFHSLLYSFARGG 506
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
V E+EA+ + ++++G N + I+ Y + + ++ V+ + + PD+R
Sbjct: 507 LVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLE 566
Query: 337 CLLNVMTQTPKEELGKLV-ECVEKSN---------SKLGYVVKL--------------LL 372
+L+V + +LV EC E+ S + Y + L LL
Sbjct: 567 AVLSVYS------FARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELL 620
Query: 373 EE--------------QDIEGDFKKEAT--------ELFNSISKDVKKAYCNCLIDLCVN 410
EE Q I+GD+ ++ + NS + + N L+D
Sbjct: 621 EEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWW 680
Query: 411 LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 470
L E A ++L ++ ++ ++ WS+ + +S G TAL +W+ND++ L
Sbjct: 681 LGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLK 740
Query: 471 GEEFPPLLGINTGHGK 486
G + P L + + G+
Sbjct: 741 G-DLPQLAVVVSVRGQ 755
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 13/301 (4%)
Query: 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 174
K ++ N F+ + K + G++ L +++ M + I KPN Y ++ +GR +
Sbjct: 100 KNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDK 159
Query: 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
++ EM G+S + +Y +L+ AYGR E +L + MK + + S+ YNT++
Sbjct: 160 CLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVIN 219
Query: 235 MCADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
CA G E +F +M+ E QPD T++++++ C+ RG EAE +F M + G
Sbjct: 220 ACARGGLDWEGLLGLFAEMR-HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGI 278
Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELG 351
P+L + L++ +GK +R + V L + G PD LL ++ KE +G
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338
Query: 352 -----KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 406
+ C +N+ Y V L L Q D ++ S + D A N LI+
Sbjct: 339 VFHQMQAAGCTPNANT---YSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIE 395
Query: 407 L 407
+
Sbjct: 396 V 396
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 1/231 (0%)
Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
E GL+ R+E + D ++TL+ G D V+ M G+ P++ TY++L
Sbjct: 229 EGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHL 288
Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
++T G+ +R +V + EM G P+ +Y LL AY ++ ++ + V+ +M+ G
Sbjct: 289 VETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGC 348
Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
+ Y+ LL + G D+ ++F +MKSS N PD+ T++ +I + G E
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS-NTDPDAATYNILIEVFGEGGYFKEVV 407
Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
+F++M+E EP++ +I GK +D + L + I P +
Sbjct: 408 TLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSK 458
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 4/239 (1%)
Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
E++F L + R + +D ++TLIK Y GNF L ++ EM G+ P++ITY +L
Sbjct: 293 EVSFVLTEMNR-RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 351
Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
+ +M +A + +M GL PN TY +L+ + + Y + V REM + G
Sbjct: 352 IHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF 411
Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEA 281
SV YN L+ G ++A + EDMK + PD ++S++++ CR V EA
Sbjct: 412 SPSVVTYNALINGHCVTGKMEDAIAVLEDMK-EKGLSPDVVSYSTVLS-GFCRSYDVDEA 469
Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
+ EM+E G +P+ +SLIQ + + +RT + + +G+ PD+ L+N
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 9/262 (3%)
Query: 86 RASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG 139
R L E +Y+T + GN A ++ +++LI AGN +
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNR 363
Query: 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199
+ ++M+ G+ PN TY L+D + + + +EM DNG SP+ TY +L+
Sbjct: 364 AMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN 423
Query: 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 259
+ ED ++V +MKEKG+ V Y+T+L+ DEA + +M + +
Sbjct: 424 GHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM-VEKGIK 482
Query: 260 PDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
PD+ T+SS+I C R + EA ++ EML G P+ F T+LI Y + ++
Sbjct: 483 PDTITYSSLIQGFCEQR-RTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541
Query: 319 ALNRLPELGITPDDRFCGCLLN 340
N + E G+ PD L+N
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLIN 563
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 1/233 (0%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
AGN+++A L+D+ + + ++TLI Y D + M G++PN+I+
Sbjct: 218 AGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLIS 277
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
YN +++ + R R +V + EM G S + TY +L++ Y + L ++ EM
Sbjct: 278 YNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEML 337
Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
G+ SV Y +L+ G + A E + M+ C P+ T+++++ S +G +
Sbjct: 338 RHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC-PNERTYTTLVDGFSQKGYM 396
Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+EA + EM + GF P++ +LI + + +D + L + E G++PD
Sbjct: 397 NEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 1/226 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+AGN+ A D+ R + ++TL+ + G + V EM G P+++
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TYN L++ + + ++M + GLSP+ +Y+++L + R+ ++ L V REM
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
EKG++ Y++L+ + T EA +++E+M PD +T++++I G
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV-GLPPDEFTYTALINAYCMEGD 535
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
+ +A + NEM+E G P++ + LI K RT + R L +L
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 37/259 (14%)
Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VKTIYK 180
+ F ++K Y D L++ +A G P +++YN +LD R+KR + ++K
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194
Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
EM ++ +SPN TY L+R + A + L+++ +M+ KG +V YNTL+ +
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254
Query: 241 YTDEAFEIFEDMKSSENCQP-----------------------------------DSWTF 265
D+ F++ M + + +P D T+
Sbjct: 255 KIDDGFKLLRSM-ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313
Query: 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
+++I G +A M EML G P++ TSLI KA + + L+++
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 326 LGITPDDRFCGCLLNVMTQ 344
G+ P++R L++ +Q
Sbjct: 374 RGLCPNERTYTTLVDGFSQ 392
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 56/281 (19%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
G +E A + + + + D ++ST++ + + + D L V EM G+KP+ ITY
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
++L+ +R + +Y+EM GL P+ TY +L+ AY E L ++ EM E
Sbjct: 489 SSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVE 548
Query: 220 KGMQLSV-----------------------------------TLYNTLLAMCADV----- 239
KG+ V Y+TL+ C+++
Sbjct: 549 KGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSV 608
Query: 240 ----------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEM 288
G EA ++FE M +N +PD ++ MI CR G + +A ++ EM
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESM-LGKNHKPDGTAYNIMIH-GHCRAGDIRKAYTLYKEM 666
Query: 289 LEAGFEPNLFVLTSLIQCY---GKAQRTDDVVRALNRLPEL 326
+++GF + + +L++ GK + V+ + R EL
Sbjct: 667 VKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCEL 707
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 131/266 (49%), Gaps = 4/266 (1%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R +A L D+ +++ +D A++T++ Y G ++ ++++E MK +G P ++
Sbjct: 187 RESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLV 246
Query: 158 TYNNLLDTMGRAKRPWQ-VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
TYN +LD G+ R W+ + + EM GL + T +++L A R + + E
Sbjct: 247 TYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAE 306
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
+K G + YN LL + G EA + ++M+ + +C DS T++ ++ G
Sbjct: 307 LKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEEN-SCPADSVTYNELVAAYVRAG 365
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
EA + M + G PN T++I YGKA + D+ ++ + E G P+
Sbjct: 366 FSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYN 425
Query: 337 CLLNVMTQTPKE-ELGKLVECVEKSN 361
+L+++ + + E+ K++ C KSN
Sbjct: 426 AVLSLLGKKSRSNEMIKML-CDMKSN 450
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 1/221 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
++ L++++G AG + L+V +EM+ + +TYN L+ RA + + + MT
Sbjct: 319 YNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMT 378
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
G+ PN TY +++ AYG+A ++ L ++ MKE G + YN +L++ ++
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSN 438
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
E ++ DMKS+ C P+ T+++M+ +C +G +F EM GFEP+ +L
Sbjct: 439 EMIKMLCDMKSN-GCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTL 497
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
I YG+ D + + G LLN + +
Sbjct: 498 ISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALAR 538
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 5/236 (2%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
RAG + A G+ + K + PNA ++T+I YG AG D L ++ MK G P
Sbjct: 362 VRAGFSKEAAGVIEMM--TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 419
Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
N TYN +L +G+ R ++ + +M NG SPN T+ ++L G + V+
Sbjct: 420 NTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVF 479
Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
REMK G + +NTL++ G +A +++ +M + T+++++ +
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM-TRAGFNACVTTYNALLNALAR 538
Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
+G E + ++M GF+P + ++QCY K + R NR+ E I P
Sbjct: 539 KGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFP 594
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 1/190 (0%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D ++ L+ Y AG V E M GV PN ITY ++D G+A + + ++
Sbjct: 350 DSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLF 409
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
M + G PN TY ++L G+ + + + +MK G + +NT+LA+C +
Sbjct: 410 YSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNK 469
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
G +F +MKS +PD TF+++I+ G +A M+ EM AGF +
Sbjct: 470 GMDKFVNRVFREMKSC-GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTT 528
Query: 300 LTSLIQCYGK 309
+L+ +
Sbjct: 529 YNALLNALAR 538
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 95/180 (52%), Gaps = 6/180 (3%)
Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
E AF L+ + ++ D F++++ ++ +D + E ++ G+ P+++TYN+L
Sbjct: 616 ERAFTLF---KKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSL 672
Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
+D R W+ + I K + + L P+ +Y ++++ + R ++ + + EM E+G+
Sbjct: 673 MDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGI 732
Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEA 281
+ + YNT ++ +G E ++ E M + +C+P+ TF M+ CR GK SEA
Sbjct: 733 RPCIFTYNTFVSGYTAMGMFAEIEDVIECM-AKNDCRPNELTF-KMVVDGYCRAGKYSEA 790
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 99/207 (47%), Gaps = 1/207 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
++ L+ G++ NV +MK+ G KP +Y+ +L + ++ I +
Sbjct: 529 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIK 588
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
+ + P+W +LL A + R + + K+ G + + ++N++L++ D
Sbjct: 589 EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 648
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
+A I E ++ + PD T++S++ + RG+ +AE + + ++ +P+L ++
Sbjct: 649 QAEGILESIR-EDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTV 707
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITP 330
I+ + + + VR L+ + E GI P
Sbjct: 708 IKGFCRRGLMQEAVRMLSEMTERGIRP 734
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 88/195 (45%), Gaps = 1/195 (0%)
Query: 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
G + K G KP+M+ +N++L R Q + I + + ++GLSP+ TY SL+
Sbjct: 614 GSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLM 673
Query: 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258
Y R + + +++ ++ + YNT++ G EA + +M +
Sbjct: 674 DMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM-TERGI 732
Query: 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318
+P +T+++ ++ + G +E E + M + PN ++ Y +A + + +
Sbjct: 733 RPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMD 792
Query: 319 ALNRLPELGITPDDR 333
++++ DD+
Sbjct: 793 FVSKIKTFDPCFDDQ 807
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 135/271 (49%), Gaps = 8/271 (2%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ G+VE A GL++ + D ++++I +G G D + +EEMK + +P++I
Sbjct: 274 KEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI 333
Query: 158 TYNNLLDTMGR-AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
TYN L++ + K P ++ Y+EM NGL PN +Y++L+ A+ + + + Y +
Sbjct: 334 TYNALINCFCKFGKLPIGLE-FYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVD 392
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M+ G+ + Y +L+ +G +AF + +M + + T++++I
Sbjct: 393 MRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQV-GVEWNVVTYTALIDGLCDAE 451
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
++ EAE +F +M AG PNL +LI + KA+ D + LN L GI PD G
Sbjct: 452 RMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG 511
Query: 337 CLLNVMTQTPKEELGKLV-----ECVEKSNS 362
+ + K E K+V EC K+NS
Sbjct: 512 TFIWGLCSLEKIEAAKVVMNEMKECGIKANS 542
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 3/219 (1%)
Query: 112 ARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
++ +++R+ P S L+ + G D +++M G +P + TYN ++D M +
Sbjct: 216 SKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKE 275
Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 229
+ +++EM GL P+ TY S++ +G+ +DT+ + EMK+ + V Y
Sbjct: 276 GDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITY 335
Query: 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289
N L+ G E + +MK + +P+ ++S+++ G + +A + +M
Sbjct: 336 NALINCFCKFGKLPIGLEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 394
Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
G PN + TSLI K D R N + ++G+
Sbjct: 395 RVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 433
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 7/210 (3%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
FS LI L G + + + +MK V P + N LL + + VK +K+M
Sbjct: 199 FSVLIDL----GMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
G P TY ++ + E ++ EMK +G+ YN+++ VG D
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 314
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 302
+ FE+MK C+PD T++++I C C+ GK+ + EM G +PN+ ++
Sbjct: 315 DTVCFFEEMKDM-CCEPDVITYNALIN-CFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372
Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD 332
L+ + K ++ + +G+ P++
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNE 402
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 7/236 (2%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
R E FG D A + PN +++ LI + A N D L + E+K G+KP+
Sbjct: 452 RMKEAEELFGKMDTAG-----VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
++ Y + + ++ K + EM + G+ N Y +L+ AY ++ + L +
Sbjct: 507 LLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLD 566
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
EMKE ++++V + L+ +A + F + + Q ++ F++MI
Sbjct: 567 EMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 626
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+V A +F +M++ G P+ TSL+ K + + +++ E+G+ D
Sbjct: 627 NQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLD 682
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 79/220 (35%), Gaps = 51/220 (23%)
Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--------------- 226
MT NG + +Y + AR D SV +EM V
Sbjct: 133 MTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGF 192
Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMK------SSENC---------------------- 258
+++ L ++ D+G +EA + F MK + +C
Sbjct: 193 GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKD 252
Query: 259 ------QPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
+P +T++ MI C C+ G V A +F EM G P+ S+I +GK
Sbjct: 253 MIGAGARPTVFTYNIMID-CMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 311
Query: 312 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
R DD V + ++ PD L+N + K +G
Sbjct: 312 RLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 351
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 150 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209
G++ N + ++D + + + T++++M GL P+ Y SL+ + +
Sbjct: 607 FGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLE 666
Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261
L++ +M E GM+L + Y +L+ + +A E+M E PD
Sbjct: 667 ALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM-IGEGIHPD 717
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 3/149 (2%)
Query: 102 VEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
V A ++R N+ + + NA F+ +I + ++E+M G+ P+ Y
Sbjct: 593 VSKAVDYFNRISND-FGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAY 651
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
+L+D + + + +M + G+ + Y SL+ + S EM
Sbjct: 652 TSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIG 711
Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
+G+ L ++L ++G DEA E+
Sbjct: 712 EGIHPDEVLCISVLKKHYELGCIDEAVEL 740
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 1/236 (0%)
Query: 97 TRAGNVEMAFGLY-DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
+AGNV+ A LY D + + + LI +G ++E M G +PN
Sbjct: 866 VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPN 925
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
YN L++ G+A ++K M G+ P+ TY+ L+ ++ L ++
Sbjct: 926 CAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFK 985
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
E+KE G+ V YN ++ +EA +F +MK+S PD +T++S+I
Sbjct: 986 ELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
G V EA ++NE+ AG EPN+F +LI+ Y + + + + G +P+
Sbjct: 1046 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 3/219 (1%)
Query: 115 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
E + P A++ I YG +G+ L +E+MK G+ PN++ N L ++ +A R
Sbjct: 425 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRD 484
Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
+ K I+ + D GL P+ TY +++ Y + ++ + + EM E G + V + N+L
Sbjct: 485 REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSL 544
Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
+ DEA+++F MK + +P T+++++ GK+ EA +F M++ G
Sbjct: 545 INTLYKADRVDEAWKMFMRMKEMK-LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603
Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
PN +L C K ++ L ++ ++G PD
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 106/217 (48%), Gaps = 1/217 (0%)
Query: 136 NFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
N G ++E+ K +GV+P + TYN L+ + A + ++ ++ G P+ TY
Sbjct: 764 NVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATY 823
Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
LL AYG++ ++ +Y+EM + + +N +++ G D+A +++ D+ S
Sbjct: 824 NFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMS 883
Query: 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314
+ P + T+ +I S G++ EA+ +F ML+ G PN + LI +GKA D
Sbjct: 884 DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEAD 943
Query: 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
R+ + G+ PD + L++ + + + G
Sbjct: 944 AACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG 980
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 7/237 (2%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RAG + A+ + R +E D ++ LI TA D V+E+MK KP+ +
Sbjct: 270 RAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRV 329
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGE--DTLSVY 214
TY LLD + VK + EM +G P+ T+ L+ A +A +GE DTL V
Sbjct: 330 TYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDV- 388
Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
M+++G+ ++ YNTL+ V D+A E+F +M+S +P ++T+ I
Sbjct: 389 --MRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESL-GVKPTAYTYIVFIDYYGK 445
Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
G A F +M G PN+ + + KA R + + L ++G+ PD
Sbjct: 446 SGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 109/230 (47%), Gaps = 4/230 (1%)
Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
EMA+ ++D + + D N + T+ K G +M+ G N +YN L
Sbjct: 136 EMAY-VFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGL 194
Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
+ + +++ + +Y+ M G P+ TY+SL+ G+ R + + + +EM+ G+
Sbjct: 195 IHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGL 254
Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEA 281
+ +V + + + G +EA+EI + M E C PD T++ +I +C+ R K+ A
Sbjct: 255 KPNVYTFTICIRVLGRAGKINEAYEILKRM-DDEGCGPDVVTYTVLIDALCTAR-KLDCA 312
Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ +F +M +P+ +L+ + + D V + + + + G PD
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPD 362
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 115 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
E + PN F+ I++ G AG + + + M G P+++TY L+D + A++
Sbjct: 250 ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKL 309
Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
K ++++M P+ TY +LL + R + + EM++ G V + L
Sbjct: 310 DCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTIL 369
Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
+ G EAF+ + M+ + P+ T++++I ++ +A +F M G
Sbjct: 370 VDALCKAGNFGEAFDTLDVMR-DQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLG 428
Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 352
+P + I YGK+ + + ++ GI P+ C L + + ++ K
Sbjct: 429 VKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAK 488
Query: 353 LV 354
+
Sbjct: 489 QI 490
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 1/174 (0%)
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T N +L+ + + ++ ++ M + + NTY ++ ++ + R+M
Sbjct: 120 TCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKM 179
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+E G L+ YN L+ + + EA E++ M E +P T+SS++ R
Sbjct: 180 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRM-ILEGFRPSLQTYSSLMVGLGKRRD 238
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ + EM G +PN++ T I+ G+A + ++ L R+ + G PD
Sbjct: 239 IDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPD 292
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPNMI 157
G V+ + + D ++ +I G + + L ++ EMK + G+ P++
Sbjct: 974 VGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLY 1033
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TYN+L+ +G A + IY E+ GL PN T+ +L+R Y + E +VY+ M
Sbjct: 1034 TYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1093
Query: 218 KEKGMQLSVTLYNTL 232
G + Y L
Sbjct: 1094 VTGGFSPNTGTYEQL 1108
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 8/185 (4%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
++ G ++ A L D ++LI A D ++ MK + +KP +
Sbjct: 514 SKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTV 573
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+TYN LL +G+ + + +++ M G PN T+ +L + L + +
Sbjct: 574 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFK 633
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M + G V YNT++ G EA F MK + +T+C+
Sbjct: 634 MMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK--------KLVYPDFVTLCTLLP 685
Query: 277 KVSEA 281
V +A
Sbjct: 686 GVVKA 690
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 2/229 (0%)
Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
EM + + RN + P S L+K G A L+V+ + K KP TYN++
Sbjct: 144 EMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSV 203
Query: 163 LDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
+ + + + +V +Y EM + G P+ TY++L+ +Y + + + ++ EMK+
Sbjct: 204 ILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNC 263
Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
MQ + +Y TLL + VG ++A ++FE+MK + C P +T++ +I G+V EA
Sbjct: 264 MQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA-GCSPTVYTYTELIKGLGKAGRVDEA 322
Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
+ +ML G P++ L +L+ GK R +++ + + TP
Sbjct: 323 YGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTP 371
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 3/233 (1%)
Query: 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153
SY+ + G + A L+D ++ + ++TL+ +Y G + L+++EEMK G
Sbjct: 242 SYE-KLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300
Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
P + TY L+ +G+A R + YK+M +GL+P+ +L+ G+ E+ +V
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNV 360
Query: 214 YREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
+ EM +V YNT++ A+ + E F+ MK +++ P +T+S +I
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK-ADSVSPSEFTYSILIDGY 419
Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
+V +A + EM E GF P SLI GKA+R + L E
Sbjct: 420 CKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKE 472
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 2/231 (0%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D +S LI Y G D + +++EMK ++P Y LL + + + ++
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
+EM G SP TY L++ G+A ++ Y++M G+ V N L+ + V
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKV 351
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
G +E +F +M C P +++++I + + VSE + F++M P+ F
Sbjct: 352 GRVEELTNVFSEM-GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF 410
Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
+ LI Y K R + + L + E G P L+N + + + E
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 123/269 (45%), Gaps = 5/269 (1%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+AG V+ A+G Y + D + L+ + G G + NV+ EM P ++
Sbjct: 315 KAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVV 374
Query: 158 TYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+YN ++ + +K +V + + +M + +SP+ TY+ L+ Y + E L + E
Sbjct: 375 SYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEE 434
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M EKG Y +L+ + A E+F+++K + S ++ MI G
Sbjct: 435 MDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFG-NVSSRVYAVMIKHFGKCG 493
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
K+SEA +FNEM G P+++ +L+ KA ++ L ++ E G D
Sbjct: 494 KLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHN 553
Query: 337 CLLNVMTQT--PKEELGKLVECVEKSNSK 363
+LN +T P+ + ++ E ++ S K
Sbjct: 554 IILNGFARTGVPRRAI-EMFETIKHSGIK 581
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 1/223 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ VE A L + + + P A+ +LI G A ++ +++E+K +
Sbjct: 421 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSR 480
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
Y ++ G+ + + ++ EM + G P+ Y +L+ +A + S+ R+M
Sbjct: 481 VYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKM 540
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+E G + + +N +L A G A E+FE +K S +PD T+++++ + G
Sbjct: 541 EENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHS-GIKPDGVTYNTLLGCFAHAGM 599
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320
EA M EM + GFE + +S++ G D V +
Sbjct: 600 FEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDVSSF 642
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 3/215 (1%)
Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
+ P+ F S LI Y + L + EEM G P Y +L++ +G+AKR
Sbjct: 405 VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAAN 464
Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
++KE+ +N + + YA +++ +G+ + + ++ EMK +G V YN L++
Sbjct: 465 ELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524
Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
G +EA + M+ + C+ D + + ++ + G A MF + +G +P+
Sbjct: 525 VKAGMINEANSLLRKMEEN-GCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPD 583
Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+L+ C+ A ++ R + + + G D
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYD 618
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 36/228 (15%)
Query: 158 TYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
TY L+ + A+ ++ +TI + + + +S + + L++A GRA+ LSV+ +
Sbjct: 128 TYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQ 187
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT------ 270
K + + + + YN+++ M G ++ E++ +M + +C PD+ T+S++I+
Sbjct: 188 AKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLG 247
Query: 271 -----------------------------ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
I GKV +A +F EM AG P ++ T
Sbjct: 248 RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYT 307
Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
LI+ GKA R D+ + G+TPD F L+N++ + + E
Sbjct: 308 ELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVE 355
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 116/227 (51%), Gaps = 7/227 (3%)
Query: 116 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
K I+PN +++T++++YG A F ++++ M+ ++ N++TYN ++ G+
Sbjct: 358 KMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHE 417
Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
+ + +EM G+ PN TY++++ +G+A + +++++++ G+++ LY T++
Sbjct: 418 KATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI 477
Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
VG A + ++K PD+ + ITI + G+ EA +F + E+G
Sbjct: 478 VAYERVGLMGHAKRLLHELK-----LPDNIPRETAITILAKAGRTEEATWVFRQAFESGE 532
Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
++ V +I Y + QR +V+ ++ G PD +LN
Sbjct: 533 VKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLN 579
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 111/214 (51%), Gaps = 1/214 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RA ++A GL+D R D +STLI +G G FD L+ ++M+ V +++
Sbjct: 167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLV 226
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
Y+NL++ R + +I+ + +G++P+ Y S++ YG+A+ + + +EM
Sbjct: 227 LYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEM 286
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
E G+ + Y+TLL++ + EA +F +MK NC D T + MI +
Sbjct: 287 NEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV-NCALDLTTCNIMIDVYGQLDM 345
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
V EA+ +F + + EPN+ ++++ YG+A+
Sbjct: 346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAE 379
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 4/202 (1%)
Query: 143 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202
V+EE K P++ YN +L + RAK+ ++ EM L+P+ TY++L+ ++G
Sbjct: 145 VHEEAK---YTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFG 201
Query: 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 262
+ + LS ++M++ + + LY+ L+ + + +A IF +K S PD
Sbjct: 202 KEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRS-GITPDL 260
Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
++SMI + EA + EM EAG PN ++L+ Y + + + +
Sbjct: 261 VAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAE 320
Query: 323 LPELGITPDDRFCGCLLNVMTQ 344
+ E+ D C +++V Q
Sbjct: 321 MKEVNCALDLTTCNIMIDVYGQ 342
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 119/278 (42%), Gaps = 31/278 (11%)
Query: 67 HGKTGSSPKSYIWVNPKSPRASKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRID 120
+GKT K+ V R + +Y T +AG ++ A L+ + R+ ID
Sbjct: 410 YGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEID 469
Query: 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 180
+ T+I Y G + E+K P+ I + + +A R + +++
Sbjct: 470 QVLYQTMIVAYERVGLMGHAKRLLHELKL----PDNIPRETAITILAKAGRTEEATWVFR 525
Query: 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240
+ ++G + + + ++ Y R + + + V+ +M+ G + ++AM +
Sbjct: 526 QAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPD----SNVIAMVLNAY 581
Query: 241 YTDEAFE----IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
FE ++ +M+ PD F M+++ S + E++F + LE+ +PN
Sbjct: 582 GKQREFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLF-QRLES--DPN 637
Query: 297 L------FVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
+ V+ +L Y +A + +D R +NR+ E GI
Sbjct: 638 VNSKELHLVVAAL---YERADKLNDASRVMNRMRERGI 672
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 118/235 (50%), Gaps = 1/235 (0%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
TR+GN++ A ++ + D ++ LI+ Y G +N+ EM G ++
Sbjct: 386 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDV 445
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+TYN +L + + K + ++ EMT+ L P+ T L+ + + ++ + ++++
Sbjct: 446 VTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQK 505
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
MKEK ++L V YNTLL VG D A EI+ DM S E P ++S ++ +G
Sbjct: 506 MKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE-ILPTPISYSILVNALCSKG 564
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
++EA +++EM+ +P + + S+I+ Y ++ D L ++ G PD
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPD 619
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 165/382 (43%), Gaps = 19/382 (4%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
R G VE+A+G+Y I+ + ++ G + +++ GV P++
Sbjct: 211 VRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDI 270
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+TYN L+ + + M G SP TY +++ + E V+ E
Sbjct: 271 VTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAE 330
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M G+ T Y +LL G E ++F DM+ S + PD FSSM+++ + G
Sbjct: 331 MLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR-SRDVVPDLVCFSSMMSLFTRSG 389
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
+ +A FN + EAG P+ + T LIQ Y + + N + + G D
Sbjct: 390 NLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYN 449
Query: 337 CLLNVMTQTPKEELGK----LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392
+L+ + + ++ LG+ E E++ Y + +L++ G+ + A ELF +
Sbjct: 450 TILHGLCK--RKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQN-AMELFQKM 506
Query: 393 SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR----SPTQWSLHLKSL 448
+ + +D+ LL+ K+ ++ E++ D+ S+ +P +S+ + +L
Sbjct: 507 KEKRIR------LDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNAL 560
Query: 449 -SLGAALTALHIWINDLSKALE 469
S G A +W +SK ++
Sbjct: 561 CSKGHLAEAFRVWDEMISKNIK 582
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 112/238 (47%), Gaps = 1/238 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ GN++ A L+ + + ++ R+D ++TL+ +G G+ D ++ +M + + P I
Sbjct: 492 KLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPI 551
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
+Y+ L++ + + ++ EM + P S+++ Y R+ D S +M
Sbjct: 552 SYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKM 611
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRG 276
+G YNTL+ +AF + + M+ + PD +T++S++ +
Sbjct: 612 ISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQN 671
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
++ EAE + +M+E G P+ T +I + + R + + + G +PDD+F
Sbjct: 672 QMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 74/165 (44%), Gaps = 1/165 (0%)
Query: 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249
N + + L+R Y +AR + + ++ KG +S+ N L+ +G+ + A+ ++
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223
Query: 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
+++ S + +T + M+ GK+ + +++ E G P++ +LI Y
Sbjct: 224 QEI-SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS 282
Query: 310 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
++ +N +P G +P ++N + + K E K V
Sbjct: 283 KGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 130/261 (49%), Gaps = 3/261 (1%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ G V+ A+ +Y++ + R + +++LIK + G + +Y++M P++
Sbjct: 459 KVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQ 518
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
N +D M +A P + + +++E+ P+ +Y+ L+ +A + +T ++ M
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM 578
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
KE+G L YN ++ G ++A+++ E+MK ++ +P T+ S+I + +
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK-TKGFEPTVVTYGSVIDGLAKIDR 637
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
+ EA +F E E N+ + +SLI +GK R D+ L L + G+TP+
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNS 697
Query: 338 LLNVMTQTPKEELGKLVECVE 358
LL+ + + EE+ + + C +
Sbjct: 698 LLDALVKA--EEINEALVCFQ 716
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 3/240 (1%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
+ G V+ A L D ++ D ++ I +G G D + E++A G+KP+
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDE 273
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+TY +++ + +A R + +++ + N P Y +++ YG A ++ S+
Sbjct: 274 VTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
+ KG SV YN +L +G DEA ++FE+MK ++ P+ T++ +I + G
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK--KDAAPNLSTYNILIDMLCRAG 391
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 335
K+ A + + M +AG PN+ + ++ K+Q+ D+ + TPD+ FC
Sbjct: 392 KLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFC 451
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 98/189 (51%), Gaps = 1/189 (0%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
A+ L++ A++++ ++ +S+LI +G G D + EE+ G+ PN+ T+N+LLD
Sbjct: 641 AYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLD 700
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
+ +A+ + ++ M + +PN TY L+ + R ++EM+++GM+
Sbjct: 701 ALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKP 760
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
S Y T+++ A G EA +F+ K++ PDS +++MI S + +A ++
Sbjct: 761 STISYTTMISGLAKAGNIAEAGALFDRFKANGGV-PDSACYNAMIEGLSNGNRAMDAFSL 819
Query: 285 FNEMLEAGF 293
F E G
Sbjct: 820 FEETRRRGL 828
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 3/235 (1%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+AG + L+ + + +D A++ +I + G + + EEMK G +P ++
Sbjct: 564 KAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVV 623
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY +++D + + R + +++E + N Y+SL+ +G+ ++ + E+
Sbjct: 624 TYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEEL 683
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
+KG+ ++ +N+LL +EA F+ MK + C P+ T+ +I +C R
Sbjct: 684 MQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK-CTPNQVTYGILINGLCKVR- 741
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
K ++A + EM + G +P+ T++I KA + +R G PD
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPD 796
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/227 (18%), Positives = 100/227 (44%), Gaps = 1/227 (0%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
+A + + + R K+R +A++TLI + + D L ++++M+ +G +P +
Sbjct: 144 VKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+ L+ + R ++ EM + L + Y + ++G+ + + E
Sbjct: 204 HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
++ G++ Y +++ + DEA E+FE ++ + P ++ +++MI G
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV-PCTYAYNTMIMGYGSAG 322
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
K EA ++ G P++ ++ C K + D+ ++ +
Sbjct: 323 KFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM 369
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 36/201 (17%)
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT------------------------ 193
+YN+LL M R + + I EM+ G P+ NT
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159
Query: 194 -----------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
Y +L+ A+ + + L+++++M+E G + +V L+ TL+ A G
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219
Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
D A + ++MKSS + D ++ I GKV A F+E+ G +P+ TS
Sbjct: 220 DSALSLLDEMKSS-SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTS 278
Query: 303 LIQCYGKAQRTDDVVRALNRL 323
+I KA R D+ V L
Sbjct: 279 MIGVLCKANRLDEAVEMFEHL 299
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
PN + LI F+ ++EM+ G+KP+ I+Y ++ + +A + +
Sbjct: 725 PNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGAL 784
Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTL 232
+ NG P+ Y +++ D S++ E + +G+ + V L +TL
Sbjct: 785 FDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTL 842
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 41/94 (43%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
AF + + + + +++T+I AGN +++ KA G P+ YN +++
Sbjct: 746 AFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIE 805
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198
+ R ++++E GL + T LL
Sbjct: 806 GLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLL 839
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 1/244 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R GN E A ++ R + ++ + ++ +I LYG A +Y EM++ KPN+
Sbjct: 241 RKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNIC 300
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY L++ R + + I++++ ++GL P+ Y +L+ +Y RA Y ++ M
Sbjct: 301 TYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM 360
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ G + YN ++ G +A +FE+MK P + +++ S
Sbjct: 361 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL-GIAPTMKSHMLLLSAYSKARD 419
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
V++ EA+ EM E G EP+ FVL S++ YG+ + + + L + T D
Sbjct: 420 VTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNI 479
Query: 338 LLNV 341
L+N+
Sbjct: 480 LINI 483
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 130/276 (47%), Gaps = 2/276 (0%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
R G E A ++++ + + D ++ L++ Y AG G ++ M+ +G +P+
Sbjct: 310 AREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDR 369
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+YN ++D GRA + +++EM G++P ++ LL AY +AR ++ +E
Sbjct: 370 ASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKE 429
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M E G++ + N++L + +G + +I +M++ C D T++ +I I G
Sbjct: 430 MSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGP-CTADISTYNILINIYGKAG 488
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
+ E +F E+ E F P++ TS I Y + + + + + G PD
Sbjct: 489 FLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAK 548
Query: 337 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLL 371
LL+ + + E++ ++ + K + V KL+
Sbjct: 549 VLLSACSSEEQVEQVTSVLRTMHKGVTVSSLVPKLM 584
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 40/273 (14%)
Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTA--------------------------------- 134
LY + ++ + ++ LIK Y A
Sbjct: 177 LYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIE 236
Query: 135 ------GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 188
GN + ++V++ MK KP TYN +++ G+A + + +Y EM +
Sbjct: 237 GLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCK 296
Query: 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
PN TY +L+ A+ R E ++ +++E G++ V +YN L+ + GY A EI
Sbjct: 297 PNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEI 356
Query: 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
F M+ C+PD +++ M+ G S+AEA+F EM G P + L+ Y
Sbjct: 357 FSLMQHM-GCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYS 415
Query: 309 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
KA+ + + E G+ PD +LN+
Sbjct: 416 KARDVTKCEAIVKEMSENGVEPDTFVLNSMLNL 448
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 38/217 (17%)
Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
+P++I +N L+D G+ + + +++Y ++ ++ P +TYA L++AY A E
Sbjct: 152 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 211
Query: 213 VYREMKEKGMQ---LSVTLYNTLL-AMCADVGYTDEAFEIFEDMK--------------- 253
V EM+ + + VT+YN + + G T+EA ++F+ MK
Sbjct: 212 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI 271
Query: 254 -------------------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294
S C+P+ T+++++ + G +AE +F ++ E G E
Sbjct: 272 NLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLE 331
Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
P+++V +L++ Y +A + + +G PD
Sbjct: 332 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPD 368
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 118/260 (45%), Gaps = 2/260 (0%)
Query: 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV 152
+ Y T+ VEM GL D D FS LI Y G D + V+ +M+ G+
Sbjct: 344 QGYATKGALVEM-HGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 402
Query: 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212
PN +TY ++ + ++ R +++M D GLSP Y SL+ E
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 462
Query: 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272
+ EM ++G+ L+ +N+++ G E+ ++FE M +P+ T++++I
Sbjct: 463 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRI-GVKPNVITYNTLINGY 521
Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
GK+ EA + + M+ G +PN ++LI Y K R +D + + G++PD
Sbjct: 522 CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDI 581
Query: 333 RFCGCLLNVMTQTPKEELGK 352
+L + QT + K
Sbjct: 582 ITYNIILQGLFQTRRTAAAK 601
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 117/230 (50%), Gaps = 1/230 (0%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D +++T+I + G+ D + Y EM G+ P+++TYN+++ + +A+ + +
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
M NG+ P+ TY S+L Y + ++ + ++M+ G++ V Y+ L+
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
G EA +IF+ M + +P+ T+ +++ + +G + E + + M+ G P+ +V
Sbjct: 315 GRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 349
+ LI Y K + D + +++ + G+ P+ G ++ ++ ++ + E
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 1/233 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ G+ + A+ Y + D ++++I A D + V M GV P+ +
Sbjct: 208 KEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 267
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TYN++L + +P + K+M +G+ P+ TY+ L+ + + ++ M
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
++G++ +T Y TLL A G E + D+ PD + FS +I + +GK
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPDHYVFSILICAYAKQGK 386
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
V +A +F++M + G PN ++I K+ R +D + ++ + G++P
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 3/180 (1%)
Query: 119 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
+ PN ++TLI Y AG D + + M ++G+KPN +TY+ L++ + R
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566
Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
++KEM +G+SP+ TY +L+ + R +Y + E G Q+ ++ YN +L
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626
Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
TD+A ++F+++ + + ++ TF+ MI G+ EA+ +F G PN
Sbjct: 627 CKNKLTDDALQMFQNL-CLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 5/246 (2%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNM 156
RAG +++ F + +R+D AF+ L+K L D V M +G PN+
Sbjct: 99 RAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNV 158
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRARYGEDTLSV 213
+YN LL + R + + M D+ G P+ +Y +++ + + + S
Sbjct: 159 FSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 218
Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
Y EM ++G+ V YN+++A D+A E+ M + PD T++S++
Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYC 277
Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
G+ EA +M G EP++ + L+ K R + + + + + G+ P+
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337
Query: 334 FCGCLL 339
G LL
Sbjct: 338 TYGTLL 343
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 116/255 (45%), Gaps = 1/255 (0%)
Query: 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
Y + G A ++D + + + TL++ Y T G + + M G+ P
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 369
Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
+ ++ L+ + + Q ++ +M GL+PN TY +++ ++ ED + +
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 429
Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
+M ++G+ +YN+L+ + A E+ +M C ++ F+S+I
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL-NTIFFNSIIDSHCK 488
Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
G+V E+E +F M+ G +PN+ +LI Y A + D+ ++ L+ + +G+ P+
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548
Query: 335 CGCLLNVMTQTPKEE 349
L+N + + E
Sbjct: 549 YSTLINGYCKISRME 563
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 117/261 (44%), Gaps = 9/261 (3%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
F+++I + G ++E M IGVKPN+ITYN L++ A + + + M
Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
GL PN TY++L+ Y + ED L +++EM+ G+ + YN +L T
Sbjct: 539 SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-EAEAMFNEMLEAGFEPNLFVLTS 302
A E++ ++ +E+ + ++I C+ K++ +A MF + +
Sbjct: 599 AAKELY--VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNI 656
Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPKEELGKLVECVEKS- 360
+I K R D+ G+ P+ + N++ Q EEL +L +E +
Sbjct: 657 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716
Query: 361 ----NSKLGYVVKLLLEEQDI 377
+ L ++V+ LL+ +I
Sbjct: 717 CTVDSGMLNFIVRELLQRGEI 737
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI--FEDMK--SSENCQPDSW 263
ED V+ E+ +G S+ N LA DV A + + M ++ PD
Sbjct: 32 EDARHVFDELLRRGRGASIYGLNRALA---DVARDSPAAAVSRYNRMARAGADEVTPDLC 88
Query: 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR-ALNR 322
T+ +I C G++ A +++ GF + T L++ +RT D + L R
Sbjct: 89 TYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 148
Query: 323 LPELGITPD 331
+ ELG P+
Sbjct: 149 MTELGCIPN 157
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 99/457 (21%), Positives = 205/457 (44%), Gaps = 47/457 (10%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
++G ++ AF L+ + + K R + FS+L+ G AG D + VY EM+ G +P+
Sbjct: 324 AKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSA 383
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+ +L+D+ +A + ++ EM +G PN+ Y ++ ++ ++ E ++V+++
Sbjct: 384 TMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKD 443
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M++ G + + Y+ LL M A G D A +I+ M ++ +P ++ S++T+ + +
Sbjct: 444 MEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSM-TNAGLRPGLSSYISLLTLLANKR 502
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD---- 332
V A + EM G+ ++ + ++ Y K D ++ L + GI ++
Sbjct: 503 LVDVAGKILLEMKAMGYSVDV-CASDVLMIYIKDASVDLALKWLRFMGSSGIKTNNFIIR 561
Query: 333 -RFCGCLLNVMTQTPKEELGKLVECVEKSN-----SKLGYVVKLLLEEQDIE-------- 378
F C+ N + + + L LV K + S L ++V+ E+++ +
Sbjct: 562 QLFESCMKNGLYDSARPLLETLVHSAGKVDLVLYTSILAHLVRCQDEDKERQLMSILSAT 621
Query: 379 ---------GDF-----KKEAT-----ELFNSISKDVKKA----YCNCLIDLCVNLNLLE 415
G F +K+ E + I ++++ + N L++ V + +
Sbjct: 622 KHKAHAFMCGLFTGPEQRKQPVLTFVREFYQGIDYELEEGAARYFVNVLLNYLVLMGQIN 681
Query: 416 NACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 474
A + ++ +++ I WSL +++LS+GAAL A+ ++ K +
Sbjct: 682 RARCVWKVAYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVV 741
Query: 475 PPLLGINTGHGKHKYSDKGLASV---FESHLKELNAP 508
P + + TG + L+SV FE L AP
Sbjct: 742 PRRIKLVTGPTLKIVIAQMLSSVESPFEVSKVVLRAP 778
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 1/227 (0%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
AF +Y+ +D + + +I +G D ++++MK ++P+ +++L+D
Sbjct: 297 AFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVD 356
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
+MG+A R +Y EM G P+ + SL+ +Y +A + L ++ EMK+ G +
Sbjct: 357 SMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRP 416
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
+ LY ++ A G + A +F+DM+ + P T+S ++ + + G+V A +
Sbjct: 417 NFGLYTMIIESHAKSGKLEVAMTVFKDMEKA-GFLPTPSTYSCLLEMHAGSGQVDSAMKI 475
Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+N M AG P L SL+ + D + L + +G + D
Sbjct: 476 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVD 522
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 153/334 (45%), Gaps = 10/334 (2%)
Query: 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
Y +A +E+AF + +A+ +ID ++ L+ L+ G +YE M+
Sbjct: 252 YLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLL 311
Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
+ TY ++ ++ ++ R ++++M + L P+++ ++SL+ + G+A + ++ VY
Sbjct: 312 DGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVY 371
Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
EM+ G + S T++ +L+ A G D A ++++MK S +P+ ++ +I +
Sbjct: 372 MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKS-GFRPNFGLYTMIIESHAK 430
Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
GK+ A +F +M +AGF P + L++ + + + D ++ N + G+ P
Sbjct: 431 SGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPG--- 487
Query: 335 CGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVK------LLLEEQDIEGDFKKEATEL 388
++++T + L + + +GY V L++ +D D +
Sbjct: 488 LSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKDASVDLALKWLRF 547
Query: 389 FNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422
S L + C+ L ++A LLE
Sbjct: 548 MGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLE 581
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 109/220 (49%), Gaps = 1/220 (0%)
Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
NA++ +I+ A + +++ + G K + TYNNL+ P++ IY+
Sbjct: 244 NAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYES 303
Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
M + +TY ++ + ++ + ++++MKE+ ++ S +++++L+ G
Sbjct: 304 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGR 363
Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
D + +++ +M+ + +P + F S+I + GK+ A +++EM ++GF PN + T
Sbjct: 364 LDTSMKVYMEMQGFGH-RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYT 422
Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
+I+ + K+ + + + + + G P CLL +
Sbjct: 423 MIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEM 462
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 126/273 (46%), Gaps = 16/273 (5%)
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARYGEDTLSVYR 215
Y L D + + + ++++++EM + S ++N Y +++ +A E ++
Sbjct: 208 YVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFK 267
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
+ +E G ++ YN L+ + + G +AFEI+E M+ +++ D T+ +I +
Sbjct: 268 KAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLL-DGSTYELIIPSLAKS 326
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
G++ A +F +M E P+ V +SL+ GKA R D ++ + G P
Sbjct: 327 GRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMF 386
Query: 336 GCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394
L++ + K + +L + ++KS G+ L IE K E+ ++ K
Sbjct: 387 VSLIDSYAKAGKLDTALRLWDEMKKS----GFRPNFGLYTMIIESHAKSGKLEVAMTVFK 442
Query: 395 DVKKA-------YCNCLIDLCVNLNLLENACKL 420
D++KA +CL+++ +++A K+
Sbjct: 443 DMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 120/232 (51%), Gaps = 13/232 (5%)
Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
K R +P+ ++ L++ + AG V++EMK G++PN+ TY+ ++D + R +
Sbjct: 248 KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQIS 307
Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
+ ++ +M D+G +PN T+ +L+R + +A E L VY +MK+ G + YN L+
Sbjct: 308 RAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLI 367
Query: 234 -AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
A C D + A ++ M + C+ ++ TF+++ + V+ A M+++M+EA
Sbjct: 368 EAHCRDENL-ENAVKVLNTM-IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAK 425
Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 336
EPN L++ + ++ TD V++ + + + P+ FCG
Sbjct: 426 CEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCG 477
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 119/229 (51%), Gaps = 4/229 (1%)
Query: 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 163
+AF + +R++ P+ ++ +I L G FD ++ + MK+ V+ ++ T+ L+
Sbjct: 134 LAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILI 193
Query: 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223
RA + + M D G P+ ++ ++ R R + S + +K++ +
Sbjct: 194 RRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDR-FE 252
Query: 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAE 282
V +Y L+ G EA ++F++MK + +P+ +T+S +I +C C G++S A
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKEMKLA-GIEPNVYTYSIVIDALCRC-GQISRAH 310
Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+F +ML++G PN +L++ + KA RT+ V++ N++ +LG PD
Sbjct: 311 DVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPD 359
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 39/211 (18%)
Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL---------------- 162
PNA F+ L++++ AG + L VY +MK +G +P+ ITYN L
Sbjct: 323 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKV 382
Query: 163 LDTMGRAKRPWQVKT-------------------IYKEMTDNGLSPNWNTYASLLRAYGR 203
L+TM + K T +Y +M + PN TY L+R +
Sbjct: 383 LNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVG 442
Query: 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263
++ + L + +EM +K ++ +V Y L+ M +G+ + A+++F++M E C S
Sbjct: 443 SKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEM-VEEKCLTPSL 501
Query: 264 TFSSMITICSCR-GKVSEAEAMFNEMLEAGF 293
+ M+ R G++ + E + +M++ G
Sbjct: 502 SLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
Y + +V A +Y + K + ++ L++++ + + D L + +EM V+P
Sbjct: 404 YIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEP 463
Query: 155 NMITYNNLLDTMGRAKRPW-QVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLS 212
N+ TY LL TM W ++KEM + L+P+ + Y +L RA +
Sbjct: 464 NVNTY-RLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEE 522
Query: 213 VYREMKEKGM 222
+ +M +KG+
Sbjct: 523 LVEKMIQKGL 532
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 112/212 (52%), Gaps = 1/212 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
++G +++A + + + + F+ LI Y AG+ + +++Y+EM+ + + N++
Sbjct: 175 KSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVV 234
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY L+D + + + +Y M ++ + PN Y +++ + + ++ + +M
Sbjct: 235 TYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKM 294
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+GM+L +T Y +++ G EA EI EDM+ S+ PD F++M+ G+
Sbjct: 295 LNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSD-LVPDMVIFTTMMNAYFKSGR 353
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
+ A M+++++E GFEP++ L+++I K
Sbjct: 354 MKAAVNMYHKLIERGFEPDVVALSTMIDGIAK 385
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 147/318 (46%), Gaps = 14/318 (4%)
Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
PN +ST I + +G L + MK + PN++T+ L+D +A ++
Sbjct: 161 PNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSL 220
Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
YKEM +S N TY +L+ + + + +Y M E ++ + +Y T++
Sbjct: 221 YKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQ 280
Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
G +D A + M ++ + D + +I+ GK+ EA + +M ++ P++
Sbjct: 281 RGDSDNAMKFLAKML-NQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMV 339
Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
+ T+++ Y K+ R V ++L E G PD +++ + + + + C+E
Sbjct: 340 IFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIE 399
Query: 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV----KKAYCNCLIDLCVNLNLL 414
K+N + Y V L++ EGDF E LF+ IS+ K Y + + LC NL+
Sbjct: 400 KANDVM-YTV--LIDALCKEGDF-IEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLV 455
Query: 415 EN---ACKLLELGLTLEV 429
+ ++++ GL L++
Sbjct: 456 DAFKLKTRMVQEGLLLDL 473
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 110/236 (46%), Gaps = 10/236 (4%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
+ G ++ A +Y R + R++PN+ ++T+I + G+ D + +M G++ +
Sbjct: 245 KKGEMQRAEEMYSRMVED--RVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLD 302
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
+ Y ++ + + + I ++M + L P+ + +++ AY ++ + +++Y
Sbjct: 303 ITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYH 362
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
++ E+G + V +T++ A G EA F K+++ ++ +I
Sbjct: 363 KLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKAND------VMYTVLIDALCKE 416
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
G E E +F+++ EAG P+ F+ TS I K D + R+ + G+ D
Sbjct: 417 GDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLD 472
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 8/197 (4%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM 156
++G ++ A +Y + + D A ST+I G A N ++E + + K N
Sbjct: 350 KSGRMKAAVNMYHKLIERGFEPDVVALSTMID--GIAKNG----QLHEAIVYFCIEKAND 403
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+ Y L+D + + +V+ ++ ++++ GL P+ Y S + + D +
Sbjct: 404 VMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTR 463
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M ++G+ L + Y TL+ A G EA ++F++M +S PDS F +I G
Sbjct: 464 MVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNS-GISPDSAVFDLLIRAYEKEG 522
Query: 277 KVSEAEAMFNEMLEAGF 293
++ A + +M G
Sbjct: 523 NMAAASDLLLDMQRRGL 539
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/278 (19%), Positives = 120/278 (43%), Gaps = 39/278 (14%)
Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD----------------- 164
++F++++ G ++ M G +P++I+YN+L+D
Sbjct: 57 SSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLES 116
Query: 165 ---TMGRAKRPWQVK-----------------TIYKEMTDNGLSPNWNTYASLLRAYGRA 204
+ G +P V +Y + SPN TY++ + + ++
Sbjct: 117 LRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKS 176
Query: 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264
+ L + MK + +V + L+ G + A ++++M+ + T
Sbjct: 177 GELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVR-MSLNVVT 235
Query: 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324
++++I +G++ AE M++ M+E EPN V T++I + + +D+ ++ L ++
Sbjct: 236 YTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKML 295
Query: 325 ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361
G+ D G +++ + K +E ++VE +EKS+
Sbjct: 296 NQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSD 333
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 43/93 (46%)
Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
GN + M G+ +++ Y L+ + + + ++ EM ++G+SP+ +
Sbjct: 452 GNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVF 511
Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
L+RAY + + +M+ +G+ +V+
Sbjct: 512 DLLIRAYEKEGNMAAASDLLLDMQRRGLVTAVS 544
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 3/218 (1%)
Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
EK + P+ A++ LI+ + G + +MK GV P++ TYN L+ GR
Sbjct: 416 EKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEF 475
Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
+ I KEM DNG PN +Y +L+ + + V R+M+++G+ V +YN L
Sbjct: 476 DKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNML 535
Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
+ C G ++AF ++M + + + T++++I S GK+SEAE + E+ G
Sbjct: 536 IDGCCSKGKIEDAFRFSKEM-LKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG 594
Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
+P++F SLI YG A + + GI P
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKP 632
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 102/208 (49%), Gaps = 3/208 (1%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
++TLI Y AGN + V E MKA ++P++IT+N LL + +A + + KEM
Sbjct: 252 YNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMK 311
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 242
D G P+ T++ L Y E L VY + G++++ + LL A+C + G
Sbjct: 312 DLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKE-GKI 370
Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
++A EI + ++ P+ +++MI +G + A M + G +P+
Sbjct: 371 EKAEEIL-GREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNC 429
Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITP 330
LI+ + + ++ + +N++ G++P
Sbjct: 430 LIRRFCELGEMENAEKEVNKMKLKGVSP 457
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 15/257 (5%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+AGN E +F + +R + + F+TL+K AG + NV +EMK +G P+
Sbjct: 261 KAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAF 320
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVY 214
T++ L D ++ +Y+ D+G+ N T + LL A G+ E+ L
Sbjct: 321 TFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILG-- 378
Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK----SSENCQPDSWTFSSMIT 270
REM KG+ + +YNT++ GY + + MK + +PD ++ +I
Sbjct: 379 REMA-KGLVPNEVIYNTMID-----GYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIR 432
Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
G++ AE N+M G P++ LI YG+ D L + + G P
Sbjct: 433 RFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMP 492
Query: 331 DDRFCGCLLNVMTQTPK 347
+ G L+N + + K
Sbjct: 493 NVVSYGTLINCLCKGSK 509
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 106/236 (44%), Gaps = 16/236 (6%)
Query: 112 ARNEKWRIDPNAFSTLIK--------LYGTA-------GNFDGCLNVYEEMKAIGVKPNM 156
+ +++R+ N F +++ +YG A + L ++ MK + P++
Sbjct: 155 VKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSV 214
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
YN L+D + + KR + ++ EM L P+ TY +L+ Y +A E + V
Sbjct: 215 FIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRER 274
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
MK ++ S+ +NTLL G ++A + ++MK PD++TFS + S
Sbjct: 275 MKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDL-GFVPDAFTFSILFDGYSSNE 333
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
K A ++ +++G + N + + L+ K + + L R G+ P++
Sbjct: 334 KAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNE 389
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 104/245 (42%), Gaps = 1/245 (0%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
A L+ RNE ++ + L+ F +NV+ + +P+ Y +
Sbjct: 128 AADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQ 187
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
+ + ++ M + + P+ Y L+ + + D ++ EM + +
Sbjct: 188 AAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLP 247
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
S+ YNTL+ G +++F++ E MK +++ +P TF++++ G V +AE +
Sbjct: 248 SLITYNTLIDGYCKAGNPEKSFKVRERMK-ADHIEPSLITFNTLLKGLFKAGMVEDAENV 306
Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
EM + GF P+ F + L Y ++ + + + G+ + C LLN + +
Sbjct: 307 LKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCK 366
Query: 345 TPKEE 349
K E
Sbjct: 367 EGKIE 371
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 34/226 (15%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
G +E AF + ++ ++TLI G ++ E+ G+KP++ TY
Sbjct: 543 GKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTY 602
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL------------RAYGR---- 203
N+L+ G A + +Y+EM +G+ P TY L+ R +G
Sbjct: 603 NSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMSLK 662
Query: 204 -------------ARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 248
A +G E ++ ++M EK + L T YN+L+ VG E +
Sbjct: 663 PDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSL 722
Query: 249 FEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGF 293
++M + E +P++ T++ ++ C + +S A + EM E GF
Sbjct: 723 IDEMNARE-MEPEADTYNIIVKGHCEVKDYMS-AYVWYREMQEKGF 766
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 56/115 (48%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D ++ ++ Y G+ + N+ ++M + + TYN+L+ + + +V+++
Sbjct: 664 DLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLI 723
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234
EM + P +TY +++ + + YREM+EKG L V + N L++
Sbjct: 724 DEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVS 778
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 119/265 (44%), Gaps = 5/265 (1%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
+G A L++ R + A++ L+K Y G ++ EM+ GV P+ T
Sbjct: 317 SGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 376
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
Y+ L+D A R + + KEM + PN ++ LL + + T V +EMK
Sbjct: 377 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 436
Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 277
G++ YN ++ D A F+ M SE +PD T++++I C C+ G+
Sbjct: 437 SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRM-LSEGIEPDRVTWNTLID-CHCKHGR 494
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
AE MF M G P +I YG +R DD+ R L ++ GI P+
Sbjct: 495 HIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTT 554
Query: 338 LLNVMTQTPKEELGKLVECVEKSNS 362
L++V ++ + +EC+E+ S
Sbjct: 555 LVDVYGKSGR--FNDAIECLEEMKS 577
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 1/228 (0%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D ++ +I +G D + ++ M + G++P+ +T+N L+D + R + ++
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
+ M G P TY ++ +YG +D + +MK +G+ +V + TL+ +
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
G ++A E E+MKS +P S ++++I + RG +A F M G +P+L
Sbjct: 563 GRFNDAIECLEEMKSV-GLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLA 621
Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
L SLI +G+ +R + L + E G+ PD L+ + + K
Sbjct: 622 LNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDK 669
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 4/247 (1%)
Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
++ A +DR +E D ++TLI + G ++E M+ G P TYN
Sbjct: 460 LDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNI 519
Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
++++ G +R +K + +M G+ PN T+ +L+ YG++ D + EMK G
Sbjct: 520 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG 579
Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
++ S T+YN L+ A G +++A F M +S+ +P +S+I + +EA
Sbjct: 580 LKPSSTMYNALINAYAQRGLSEQAVNAFRVM-TSDGLKPSLLALNSLINAFGEDRRDAEA 638
Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL--- 338
A+ M E G +P++ T+L++ + + V + G PD + L
Sbjct: 639 FAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSA 698
Query: 339 LNVMTQT 345
L M QT
Sbjct: 699 LRYMKQT 705
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 9/235 (3%)
Query: 119 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
+ PN+F S L+ + G + V +EMK+IGVKP+ YN ++DT G+
Sbjct: 405 VQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAM 464
Query: 177 TIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
T + M G+ P+ WNT +GR E+ ++ M+ +G T YN ++
Sbjct: 465 TTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE---MFEAMERRGCLPCATTYNIMI 521
Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
D D+ + MKS + P+ T ++++ + G+ ++A EM G
Sbjct: 522 NSYGDQERWDDMKRLLGKMKS-QGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGL 580
Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348
+P+ + +LI Y + ++ V A + G+ P L+N + ++
Sbjct: 581 KPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRD 635
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 119/267 (44%), Gaps = 7/267 (2%)
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT--LSVY 214
+TYN L+ R + + +M +G ++ Y+ ++++ R+ + L +Y
Sbjct: 198 LTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLY 257
Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
+E++ ++L V L N ++ A G +A ++ M + + T S+I+ +
Sbjct: 258 KEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLL-GMAQATGLSAKTATLVSIISALAD 316
Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
G+ EAEA+F E+ ++G +P +L++ Y K D ++ + + G++PD+
Sbjct: 317 SGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 376
Query: 335 CGCLLNVMTQTPKEELGKLV--ECVEKSNSKLGYVVKLLLEEQDIEGDFKK--EATELFN 390
L++ + E ++V E +V LL G+++K + +
Sbjct: 377 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 436
Query: 391 SISKDVKKAYCNCLIDLCVNLNLLENA 417
SI + + N +ID N L++A
Sbjct: 437 SIGVKPDRQFYNVVIDTFGKFNCLDHA 463
>sp|Q56XR6|PP421_ARATH Pentatricopeptide repeat-containing protein At5g46680
OS=Arabidopsis thaliana GN=At5g46680 PE=2 SV=2
Length = 468
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 122/233 (52%), Gaps = 7/233 (3%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D ++TLIK Y D V M+ G++P++ TYN+L+ + +V ++
Sbjct: 47 DVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLF 106
Query: 180 KEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
EM +GLSP+ +Y +L+ Y + R+GE ++ ++ G+ + YN LL
Sbjct: 107 DEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCK 166
Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNL 297
G+TD A E+F+ +KS +P+ T++ +I +C R +V + M E+ ++G+ PN
Sbjct: 167 SGHTDNAIELFKHLKS--RVKPELMTYNILINGLCKSR-RVGSVDWMMRELKKSGYTPNA 223
Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC-LLNVMTQTPKEE 349
T++++ Y K +R + ++ ++ + G T D F C +++ + +T + E
Sbjct: 224 VTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDG-FANCAVVSALIKTGRAE 275
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 109/219 (49%), Gaps = 1/219 (0%)
Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
+ ++ L+ +G+ D + +++ +K+ VKP ++TYN L++ + +++R V + +E
Sbjct: 155 DTYNILLDALCKSGHTDNAIELFKHLKS-RVKPELMTYNILINGLCKSRRVGSVDWMMRE 213
Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
+ +G +PN TY ++L+ Y + + E L ++ +MK++G +++ G
Sbjct: 214 LKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGR 273
Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
+EA+E ++ S D ++++++ + G + + + E+ G +P+ + T
Sbjct: 274 AEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHT 333
Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
++ T + L + E+G+ P C CL++
Sbjct: 334 IIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLID 372
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 111/218 (50%), Gaps = 4/218 (1%)
Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
+++ + G + C +++M GV ++ +Y+ +D M ++ +PW+ +YKEM
Sbjct: 195 ILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRR 254
Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
+ + Y +++RA G ++ E + V+REM+E+G + +V +NT++ + + G +A+
Sbjct: 255 MKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAY 314
Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
+ ++M CQPDS T+ + + K SE ++F M+ +G P + L++
Sbjct: 315 RMLDEM-PKRGCQPDSITYMCLFSRLE---KPSEILSLFGRMIRSGVRPKMDTYVMLMRK 370
Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
+ + V+ + E G TPD +++ + Q
Sbjct: 371 FERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQ 408
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 4/198 (2%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
++G A LY ++ + ++D A++T+I+ G + + + V+ EM+ G +PN+
Sbjct: 236 KSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVA 295
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T+N ++ + R + EM G P+ TY L + R + LS++ M
Sbjct: 296 THNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCL---FSRLEKPSEILSLFGRM 352
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
G++ + Y L+ G+ +++ MK S + PDS ++++I +G
Sbjct: 353 IRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGD-TPDSAAYNAVIDALIQKGM 411
Query: 278 VSEAEAMFNEMLEAGFEP 295
+ A EM+E G P
Sbjct: 412 LDMAREYEEEMIERGLSP 429
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 151/328 (46%), Gaps = 28/328 (8%)
Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
+A + LIK +G G + L V+ +MK G++P + TYN L++ + A + +++
Sbjct: 188 SAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEV 247
Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
M + P+ TY ++++ Y +A + + R+M+ +G + Y T++ C Y
Sbjct: 248 MESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC----Y 303
Query: 242 TDEAF----EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
D F ++++M + Q FS +I GK++E +F M+ G +PN+
Sbjct: 304 ADSDFGSCVALYQEM-DEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNV 362
Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 357
+ T LI Y K+ +D +R L+R+ + G PD ++N + + G++ E +
Sbjct: 363 AIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN-----GRVEEAL 417
Query: 358 EKSNSKL--GYVVKLLLEEQDIEGDFK----KEATELFNSISKD--VKKAYC-NCLIDLC 408
+ ++ G + + I+G K EA LF +S+ + +YC N LID
Sbjct: 418 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477
Query: 409 VNLNLLENACKLL-----ELGLTLEVYT 431
++ A L E G VYT
Sbjct: 478 TKHRKVDEAIALFKRMEEEEGCDQTVYT 505
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 2/225 (0%)
Query: 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166
LY + ++ P+AFS +I G + V+E M G KPN+ Y L+D
Sbjct: 313 ALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGY 372
Query: 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226
++ + M D G P+ TY+ ++ + E+ L + + G+ ++
Sbjct: 373 AKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINS 432
Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
Y++L+ G DEA +FE+M S + C DS+ ++++I + KV EA A+F
Sbjct: 433 MFYSSLIDGLGKAGRVDEAERLFEEM-SEKGCTRDSYCYNALIDAFTKHRKVDEAIALFK 491
Query: 287 EM-LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
M E G + ++ T L+ K R ++ ++ + + + GITP
Sbjct: 492 RMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITP 536
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 3/235 (1%)
Query: 115 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172
E RI P+ ++T+IK Y AG + +M+ G + + ITY ++
Sbjct: 249 ESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDF 308
Query: 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232
+Y+EM + G+ + ++ ++ + + +V+ M KG + +V +Y L
Sbjct: 309 GSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVL 368
Query: 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292
+ A G ++A + M E +PD T+S ++ G+V EA F+ G
Sbjct: 369 IDGYAKSGSVEDAIRLLHRM-IDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG 427
Query: 293 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347
N +SLI GKA R D+ R + E G T D L++ T+ K
Sbjct: 428 LAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRK 482
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 97/213 (45%), Gaps = 2/213 (0%)
Query: 121 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
PN ++ LI Y +G+ + + + M G KP+++TY+ +++ + + R +
Sbjct: 360 PNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 419
Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
+ +GL+ N Y+SL+ G+A ++ ++ EM EKG YN L+
Sbjct: 420 FHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 479
Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
DEA +F+ M+ E C +T++ +++ + EA +++ M++ G P
Sbjct: 480 HRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAA 539
Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+L + + + L+ L +G+ D
Sbjct: 540 CFRALSTGLCLSGKVARACKILDELAPMGVILD 572
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 110/216 (50%), Gaps = 3/216 (1%)
Query: 118 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175
R P+ A S+L++ G + LN+ + + GV PN+ YN L+D++ + ++ +
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEA 386
Query: 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235
+ ++ M GL PN TY+ L+ + R + LS EM + G++LSV YN+L+
Sbjct: 387 ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLING 446
Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
G A +M ++ +P T++S++ +GK+++A +++EM G P
Sbjct: 447 HCKFGDISAAEGFMAEM-INKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAP 505
Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+++ T+L+ +A D V+ N + E + P+
Sbjct: 506 SIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPN 541
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 3/256 (1%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ G++ A G N+K +++L+ Y + G + L +Y EM G+ P++
Sbjct: 449 KFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIY 508
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T+ LL + RA ++ EM + + PN TY ++ Y +EM
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
EKG+ Y L+ G EA ++F D NC+ + ++ ++ GK
Sbjct: 569 TEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGK 627
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
+ EA ++ EM++ G + +L LI K + L + + G+ PDD
Sbjct: 628 LEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTS 687
Query: 338 LLNVMTQTP--KEELG 351
+++ ++T KE G
Sbjct: 688 MIDAKSKTGDFKEAFG 703
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 9/251 (3%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
RAG + A L++ +W + PN ++ +I+ Y G+ +EM G+ P+
Sbjct: 519 RAGLIRDAVKLFNEM--AEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPD 576
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
+Y L+ + + + K + N Y LL + R E+ LSV +
Sbjct: 577 TYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQ 636
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEA--FEIFEDMKSSENCQPDSWTFSSMITICS 273
EM ++G+ L + Y L+ + + D F + ++M +PD ++SMI S
Sbjct: 637 EMVQRGVDLDLVCYGVLID--GSLKHKDRKLFFGLLKEMH-DRGLKPDDVIYTSMIDAKS 693
Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
G EA +++ M+ G PN T++I KA ++ +++ + P+
Sbjct: 694 KTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQV 753
Query: 334 FCGCLLNVMTQ 344
GC L+++T+
Sbjct: 754 TYGCFLDILTK 764
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 105/228 (46%), Gaps = 12/228 (5%)
Query: 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195
+F + ++ +M ++G++P++ Y ++ ++ K + K + M G N Y
Sbjct: 207 HFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYN 266
Query: 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255
L+ + + + + + +++ K ++ V Y TL+ V + FEI +M
Sbjct: 267 VLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKV----QEFEIGLEMMDE 322
Query: 256 ENC---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
C P SS++ RGK+ EA + +++ G PNLFV +LI K ++
Sbjct: 323 MLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRK 382
Query: 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVE 355
+ +R+ ++G+ P+D L+++ + K + LG++V+
Sbjct: 383 FHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVD 430
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 1/200 (0%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
++ G+ + AFG++D NE + ++ +I AG + + +M+ + PN
Sbjct: 693 SKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQ 752
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
+TY LD + + + Q GL N TY L+R + R E+ +
Sbjct: 753 VTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITR 812
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M G+ Y T++ +A E++ M + + +PD ++++I C G
Sbjct: 813 MIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSM-TEKGIRPDRVAYNTLIHGCCVAG 871
Query: 277 KVSEAEAMFNEMLEAGFEPN 296
++ +A + NEML G PN
Sbjct: 872 EMGKATELRNEMLRQGLIPN 891
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 1/231 (0%)
Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
++ FGL + + D ++++I G+F +++ M G PN +TY +
Sbjct: 664 KLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAV 723
Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
++ + +A + + + +M PN TY L + KG+
Sbjct: 724 INGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGL 783
Query: 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282
+ YN L+ G +EA E+ M + PD T+++MI R V +A
Sbjct: 784 LANTATYNMLIRGFCRQGRIEEASELITRM-IGDGVSPDCITYTTMINELCRRNDVKKAI 842
Query: 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
++N M E G P+ +LI A N + G+ P+++
Sbjct: 843 ELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNK 893
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 1/226 (0%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
A G+ + + D + TL+ F+ L + +EM + P+ ++L++
Sbjct: 281 AVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVE 340
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
+ + + + + K + D G+SPN Y +L+ + + R + ++ M + G++
Sbjct: 341 GLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRP 400
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
+ Y+ L+ M G D A +M + + + ++S+I G +S AE
Sbjct: 401 NDVTYSILIDMFCRRGKLDTALSFLGEMVDT-GLKLSVYPYNSLINGHCKFGDISAAEGF 459
Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
EM+ EP + TSL+ Y + + +R + + GI P
Sbjct: 460 MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAP 505
Score = 35.8 bits (81), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R G +E A L R + D ++T+I + + ++ M G++P+ +
Sbjct: 799 RQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRV 858
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
YN L+ A + + EM GL PN T
Sbjct: 859 AYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 1/245 (0%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
TR + L + + D F+ +I +GN D + ++E+MK G KP
Sbjct: 365 TRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTA 424
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
T+N L+ G+ + + + M D L PN T L++A+ R E+ ++
Sbjct: 425 STFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVY 484
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
+M+ G++ V +NTL A +G T A ++ +P+ T +++
Sbjct: 485 KMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE 544
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
GK+ EA F M E G PNLFV SLI+ + D V ++ + E G+ PD
Sbjct: 545 GKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTF 604
Query: 336 GCLLN 340
L+N
Sbjct: 605 STLMN 609
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 38/272 (13%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDG----------------- 139
+ +GN++ A ++++ + + + F+TLIK YG G +
Sbjct: 400 SESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPN 459
Query: 140 -------------------CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIY 179
N+ +M++ GVKP+++T+N L R + I
Sbjct: 460 DRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMII 519
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
M N + PN T +++ Y E+ L + MKE G+ ++ ++N+L+ ++
Sbjct: 520 PRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNI 579
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
D E+ D+ +PD TFS+++ S G + E ++ +MLE G +P++
Sbjct: 580 NDMDGVGEVV-DLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHA 638
Query: 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ L + Y +A + + LN++ + G+ P+
Sbjct: 639 FSILAKGYARAGEPEKAEQILNQMRKFGVRPN 670
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 90/171 (52%), Gaps = 2/171 (1%)
Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
L++ + RP + +I+ + + G P+ TY +L+ A R ++ LS+ ++++ G
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384
Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
++ L+N ++ ++ G D+A +IFE MK S C+P + TF+++I GK+ E+
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKES-GCKPTASTFNTLIKGYGKIGKLEES 443
Query: 282 EAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ + ML + +PN L+Q + ++ ++ + ++ G+ PD
Sbjct: 444 SRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPD 494
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 100/202 (49%), Gaps = 5/202 (2%)
Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
G KP++ITY L+ + R K + ++ ++ NGL P+ + +++ A + +
Sbjct: 349 GHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 408
Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
+ ++ +MKE G + + + +NTL+ +G +E+ + + M E QP+ T + ++
Sbjct: 409 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQ 468
Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELG 327
+ K+ EA + +M G +P++ +L + Y + T +D++ + R+
Sbjct: 469 AWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNK 526
Query: 328 ITPDDRFCGCLLNVMTQTPKEE 349
+ P+ R CG ++N + K E
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKME 548
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 88/172 (51%), Gaps = 4/172 (2%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
G +E A + R + + + PN F++LIK + + DG V + M+ GVKP+++
Sbjct: 545 GKMEEALRFFYRMK--ELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T++ L++ + + IY +M + G+ P+ + ++ L + Y RA E + +M
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
++ G++ +V +Y +++ G +A ++++ M P+ T+ ++I
Sbjct: 663 RKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLI 714
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPW 173
IDP+ AFS L K Y AG + + +M+ GV+PN++ Y ++ + G K+
Sbjct: 632 IDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 691
Query: 174 QVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222
QV YK+M GLSPN TY +L+ +G A+ + ++M+ K +
Sbjct: 692 QV---YKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNV 738
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVK 153
RAG E A + ++ R K+ + PN ++ +I + +AG + VY++M I G+
Sbjct: 647 ARAGEPEKAEQILNQMR--KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLS 704
Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
PN+ TY L+ G AK+PW+ + + K+M + P T
Sbjct: 705 PNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKT 744
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
RG+ EA ++FN ++E G +P+L T+L+ + + ++ ++++ + G+ PD
Sbjct: 332 RGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTIL 391
Query: 335 CGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
++N +++ ++ K+ E +++S K
Sbjct: 392 FNAIINASSESGNLDQAMKIFEKMKESGCK 421
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 114/224 (50%), Gaps = 5/224 (2%)
Query: 98 RAGNVEMAFGL---YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
RA N+ +A +R N ++ F++LI+ YG AG F + +++ MK +G+ P
Sbjct: 112 RARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISP 171
Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSV 213
+++T+N+LL + + R ++ EM G++P+ T+ +L+ + + ++ +
Sbjct: 172 SVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRI 231
Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITIC 272
+++M+ V YNT++ G A + M K + + P+ ++++++
Sbjct: 232 FKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGY 291
Query: 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
+ ++ EA +F++ML G +PN +LI+ +A R D++
Sbjct: 292 CMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEI 335
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 6/204 (2%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
+ G MA L+D R + + P++ F+TLI + D ++++M+ P+
Sbjct: 185 KRGRTGMAHDLFDEMR-RTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPD 243
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSV 213
++TYN ++D + RA + + M + PN +Y +L+R Y + ++ + V
Sbjct: 244 VVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLV 303
Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSWTFSSMITIC 272
+ +M +G++ + YNTL+ ++ DE +I + PD+ TF+ +I
Sbjct: 304 FHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAH 363
Query: 273 SCRGKVSEAEAMFNEMLEAGFEPN 296
G + A +F EML P+
Sbjct: 364 CDAGHLDAAMKVFQEMLNMKLHPD 387
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 10/207 (4%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
RAG V++A + + + PN +++TL++ Y D + V+ +M + G+KPN
Sbjct: 256 RAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPN 315
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSV 213
+TYN L+ + A R ++K I D +P+ T+ L++A+ A + + + V
Sbjct: 316 AVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKV 375
Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------NCQPDSWTFSS 267
++EM + Y+ L+ D A +F ++ E C+P + ++
Sbjct: 376 FQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNP 435
Query: 268 MITICSCRGKVSEAEAMFNEMLEAGFE 294
M GK +AE +F ++++ G +
Sbjct: 436 MFEYLCANGKTKQAEKVFRQLMKRGVQ 462
Score = 36.2 bits (82), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 94/240 (39%), Gaps = 34/240 (14%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
DP ++ TLI + G F + M P++ TY L+D + +
Sbjct: 463 DPPSYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTL 522
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
+ M + P T+ S+L + ++ ++ + M EK ++ ++ L ++ +
Sbjct: 523 QRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSS 582
Query: 240 GYTDEAFEIFEDMKSS--------------ENCQ-PDSWTF-------SSMITICSCRGK 277
++AF I + + EN + D+ T S M+ I +C
Sbjct: 583 AQKEKAFLIVRLLYDNGYLVKMEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTV 642
Query: 278 V---------SEAEAMFNEMLEAGFEPNL---FVLTSLIQCYGKAQRTDDVVRALNRLPE 325
+ SEA +++NE++E G L VL + ++ GK + V + + L E
Sbjct: 643 IEGLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLRNALEAAGKWEELQFVSKRMATLRE 702
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 90/161 (55%), Gaps = 1/161 (0%)
Query: 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167
L+++ + + D ++ LI +G G D +N++EE++ KP++I+YN+L++ +G
Sbjct: 464 LFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLG 523
Query: 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227
+ + +KEM + GL+P+ TY++L+ +G+ E S++ EM KG Q ++
Sbjct: 524 KNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIV 583
Query: 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268
YN LL G T EA +++ MK + PDS T++ +
Sbjct: 584 TYNILLDCLEKNGRTAEAVDLYSKMK-QQGLTPDSITYTVL 623
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 12/228 (5%)
Query: 120 DPNAFSTLIKLYGTAG---NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
DP ++ +I + + FD ++ + M V N+ T N L+ G +
Sbjct: 132 DPFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCL 191
Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 235
+ K+ L N TY LL+AY R+R VY E++ G +L + YN LL A+
Sbjct: 192 RLVKKW---DLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDAL 248
Query: 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295
D ++A ++FEDMK +C+ D +T++ MI GK EA +FNEM+ G
Sbjct: 249 AKD----EKACQVFEDMKK-RHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTL 303
Query: 296 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
N+ +L+Q K + D ++ +R+ E G P++ LLN++
Sbjct: 304 NVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLV 351
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 118/237 (49%), Gaps = 16/237 (6%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
+S L++ G+ ++ +M + VK +Y ++L+++ A + + + ++
Sbjct: 375 YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIH 434
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
+ G+ + Y ++ A G+ + ++ +MK+ G + YN L+A VG D
Sbjct: 435 EKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVD 494
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
EA IFE+++ S+ C+PD +++S+I G V EA F EM E G P++ ++L
Sbjct: 495 EAINIFEELERSD-CKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTL 553
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
++C+GK +R + A + E+ + GC N++T L++C+EK+
Sbjct: 554 MECFGKTERVE---MAYSLFEEMLVK------GCQPNIVTYNI------LLDCLEKN 595
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
+++ ++++ AG + + ++ GV + + YN + +G+ K+ + ++++
Sbjct: 408 DSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEK 467
Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
M +G SP+ TY L+ ++GR ++ ++++ E++ + + YN+L+ G
Sbjct: 468 MKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGD 527
Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE---AMFNEMLEAGFEPNLF 298
DEA F++M+ + PD T+S T+ C GK E ++F EML G +PN+
Sbjct: 528 VDEAHVRFKEMQ-EKGLNPDVVTYS---TLMECFGKTERVEMAYSLFEEMLVKGCQPNIV 583
Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
L+ C K RT + V +++ + G+TPD
Sbjct: 584 TYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPD 616
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 98/205 (47%), Gaps = 1/205 (0%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
AG A + + + D ++T+ G +++E+MK G P++ T
Sbjct: 420 AGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFT 479
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
YN L+ + GR + I++E+ + P+ +Y SL+ G+ ++ ++EM+
Sbjct: 480 YNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ 539
Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
EKG+ V Y+TL+ + A+ +FE+M + CQP+ T++ ++ G+
Sbjct: 540 EKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEM-LVKGCQPNIVTYNILLDCLEKNGRT 598
Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSL 303
+EA ++++M + G P+ T L
Sbjct: 599 AEAVDLYSKMKQQGLTPDSITYTVL 623
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 105/232 (45%), Gaps = 10/232 (4%)
Query: 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162
E A +++ + R D ++ +I+ G G D + ++ EM G+ N++ YN L
Sbjct: 252 EKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTL 311
Query: 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKE 219
+ + + K + ++ M + G PN TY+ +LL A G+ + + + +
Sbjct: 312 MQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMT 371
Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
+G +Y+ L+ + +G+ EA +F DM S + + ++ SM+ GK
Sbjct: 372 QG------IYSYLVRTLSKLGHVSEAHRLFCDMWSFP-VKGERDSYMSMLESLCGAGKTI 424
Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
EA M +++ E G + + ++ GK ++ + ++ + G +PD
Sbjct: 425 EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPD 476
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R G V+ A +++ + D ++++LI G G+ D ++EM+ G+ P+++
Sbjct: 489 RVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVV 548
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY+ L++ G+ +R ++++EM G PN TY LL + + + +Y +M
Sbjct: 549 TYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKM 608
Query: 218 KEKGMQLSVTLYNTL 232
K++G+ Y L
Sbjct: 609 KQQGLTPDSITYTVL 623
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ G+V+ A + + + D +STL++ +G + +++EEM G +PN++
Sbjct: 524 KNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIV 583
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR----AYGRAR 205
TYN LLD + + R + +Y +M GL+P+ TY L R ++G++R
Sbjct: 584 TYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVLERLQSVSHGKSR 635
>sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710
OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
Length = 991
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 42/292 (14%)
Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
VE Y + R D ++ +IK YG A + L++++ MK G P+ TYN+
Sbjct: 496 VEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNS 555
Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR------------------ 203
L + + + I EM D+G P TYA+++ +Y R
Sbjct: 556 LFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTG 615
Query: 204 -----ARYG------------EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246
YG E+ + +R M+E G+Q + + +L+ + VG +EA
Sbjct: 616 VKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEAR 675
Query: 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306
+++ MK SE PD +SM+++C+ G VSEAE++FN + E G ++ +++
Sbjct: 676 RVYDKMKDSEG-GPDVAASNSMLSLCADLGIVSEAESIFNALREKG-TCDVISFATMMYL 733
Query: 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 358
Y D+ + + E G+ D C VM + G+L EC E
Sbjct: 734 YKGMGMLDEAIEVAEEMRESGLLSD---CTSFNQVMACYAAD--GQLSECCE 780
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/358 (19%), Positives = 153/358 (42%), Gaps = 42/358 (11%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
G++ A L + + D ++ L+ L+ AG+ + L Y +++ +G+ P+ +T+
Sbjct: 354 GHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTH 413
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG------RAR-------- 205
+L + + K +V+ + EM N + + ++ +++ Y +A+
Sbjct: 414 RAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQL 473
Query: 206 ---------------YGEDTLSV------YREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
Y E L V Y + G + V YN ++ ++
Sbjct: 474 DCVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEK 533
Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304
A +F+ MK+ + PD T++S+ + + V EA+ + EML++G +P ++I
Sbjct: 534 ALSLFKGMKN-QGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMI 592
Query: 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
Y + D V + + G+ P++ G L+N ++ EE + +E+ +
Sbjct: 593 ASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQ 652
Query: 364 LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK----AYCNCLIDLCVNLNLLENA 417
++V L + + +EA +++ + KD + A N ++ LC +L ++ A
Sbjct: 653 SNHIVLTSLIKAYSKVGCLEEARRVYDKM-KDSEGGPDVAASNSMLSLCADLGIVSEA 709
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 112/259 (43%), Gaps = 42/259 (16%)
Query: 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 181
+ F+TLI LYG AG + N++ EM GV + +T+N ++ T G + +++ K+
Sbjct: 306 STFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKK 365
Query: 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL------AM 235
M + G+SP+ TY LL + A E L YR++++ G+ + +L M
Sbjct: 366 MEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKM 425
Query: 236 CADV-----------------------------GYTDEAFEIFEDMKSSENCQPDSWTFS 266
A+V G +A +FE + +C S T +
Sbjct: 426 VAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQL--DCVLSSTTLA 483
Query: 267 SMITICSCRGKVSEAEAMF-NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325
++I + + +G EAE +F + +G ++ +I+ YGKA+ + + +
Sbjct: 484 AVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKN 543
Query: 326 LGITPDDRFCGCLLNVMTQ 344
G PD+ C N + Q
Sbjct: 544 QGTWPDE----CTYNSLFQ 558
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 112/262 (42%), Gaps = 15/262 (5%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
G V A +++ R EK D +F+T++ LY G D + V EEM+ G+ + ++
Sbjct: 704 GIVSEAESIFNALR-EKGTCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSDCTSF 762
Query: 160 NNLLDTMGRAKRPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLS----VY 214
N ++ + + ++ EM + L +W T+ +L + + +S Y
Sbjct: 763 NQVMACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVSQLQTAY 822
Query: 215 REMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
E K ++ TL++ + G A E +++ S E + + ++++I S
Sbjct: 823 NEAKPLATPAITATLFSAM-------GLYAYALESCQELTSGE-IPREHFAYNAVIYTYS 874
Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
G + A + M E G EP++ L+ YGKA + V R +RL + P
Sbjct: 875 ASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPSQS 934
Query: 334 FCGCLLNVMTQTPKEELGKLVE 355
+ + +++L +V+
Sbjct: 935 LFKAVRDAYVSANRQDLADVVK 956
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 121/301 (40%), Gaps = 40/301 (13%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
+G VE A + + + ++LIK Y G + VY++MK P++
Sbjct: 633 SGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAA 692
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
N++L + ++I+ + + G + + ++A+++ Y ++ + V EM+
Sbjct: 693 SNSMLSLCADLGIVSEAESIFNALREKG-TCDVISFATMMYLYKGMGMLDEAIEVAEEMR 751
Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
E G+ T +N ++A A G E E+F +M D TF ++ T+ G
Sbjct: 752 ESGLLSDCTSFNQVMACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVP 811
Query: 279 SEA----EAMFNEM----------------------------LEAGFEPN-LFVLTSLIQ 305
SEA + +NE L +G P F ++I
Sbjct: 812 SEAVSQLQTAYNEAKPLATPAITATLFSAMGLYAYALESCQELTSGEIPREHFAYNAVIY 871
Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLG 365
Y + D ++A R+ E G+ PD L+ + + +VE V++ +S+L
Sbjct: 872 TYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGK------AGMVEGVKRVHSRLT 925
Query: 366 Y 366
+
Sbjct: 926 F 926
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 54/242 (22%)
Query: 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
PN+I YN +L +GRA + +++ + EM NG+ P NTY L+ YG+A ++ L
Sbjct: 143 PNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALLW 202
Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE---------DMKS---------- 254
+ M ++ T++ + + G D A F+ D+ S
Sbjct: 203 IKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAGKVDLDLDSIDDFPKNGSA 262
Query: 255 ------------------SENCQPDSWTFSS-----------------MITICSCRGKVS 279
+ N S F+S +I + G+++
Sbjct: 263 QSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLYGKAGRLN 322
Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
+A +F+EML++G + ++I G + L ++ E GI+PD + LL
Sbjct: 323 DAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILL 382
Query: 340 NV 341
++
Sbjct: 383 SL 384
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
A++ +I Y +G+ D L Y M+ G++P+++T L+ G+A VK ++ +
Sbjct: 865 AYNAVIYTYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRL 924
Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T L P+ + + ++ AY A + V +EM
Sbjct: 925 TFGELEPSQSLFKAVRDAYVSANRQDLADVVKKEM 959
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
+G+++MA Y R + + D + L+ +YG AG +G V+ + ++P+
Sbjct: 876 SGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPSQSL 935
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMT 183
+ + D A R + KEM+
Sbjct: 936 FKAVRDAYVSANRQDLADVVKKEMS 960
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 2/265 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+A VE A + +R +++T+I+ Y F + EM+A G PN I
Sbjct: 236 KANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSI 295
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR-E 216
TY ++ ++ K + + M +G P+ Y L+ RA E+ V+R E
Sbjct: 296 TYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVE 355
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
M E G+ ++ + YN+++AM D+A E+ ++M+SS C PD T+ ++ C RG
Sbjct: 356 MPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRG 415
Query: 277 KVSEAEAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
V E + EM+ + + T LIQ +A + + ITP R C
Sbjct: 416 DVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTC 475
Query: 336 GCLLNVMTQTPKEELGKLVECVEKS 360
LL + + E + +E + K+
Sbjct: 476 LLLLEEVKKKNMHESAERIEHIMKT 500
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 38/243 (15%)
Query: 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 210
G K + Y+ +D +G+AK+ ++K + M + L NT A ++R + A E+
Sbjct: 116 GHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKL-VTLNTVAKIMRRFAGAGEWEEA 174
Query: 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270
+ ++ + E G++ + N LL ++A + +KS + P++ TF+ I
Sbjct: 175 VGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKS--HITPNAHTFNIFIH 232
Query: 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK--------------------- 309
+V EA EM GF P + T++I+CY +
Sbjct: 233 GWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPP 292
Query: 310 -------------AQRT-DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 355
AQ+ ++ +R R+ G PD F CL++ + + + E + V
Sbjct: 293 NSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF 352
Query: 356 CVE 358
VE
Sbjct: 353 RVE 355
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 6/229 (2%)
Query: 116 KWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAK 170
+ +I PN F+ +I G + +V E+MK G PN+++YN L+D +G
Sbjct: 216 RRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNG 275
Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
+ ++ + KEM +N +SPN T+ L+ + + ++ V++EM ++ ++ +V YN
Sbjct: 276 KMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYN 335
Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290
+L+ + G EA + + M S+ QP+ T++++I + EA MF +
Sbjct: 336 SLINGLCNGGKISEAISMRDKMVSA-GVQPNLITYNALINGFCKNDMLKEALDMFGSVKG 394
Query: 291 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
G P + LI Y K + DD + GI PD CL+
Sbjct: 395 QGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 106/214 (49%), Gaps = 4/214 (1%)
Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
+ PN F+ LI + N G + V++EM VKPN+I+YN+L++ + + +
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAI 351
Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
++ +M G+ PN TY +L+ + + ++ L ++ +K +G + +YN L+
Sbjct: 352 SMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAY 411
Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
+G D+ F + E+M+ E PD T++ +I G + A+ +F+++ G P+
Sbjct: 412 CKLGKIDDGFALKEEME-REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PD 469
Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
L L++ Y + + L + ++G+ P
Sbjct: 470 LVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKP 503
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 1/173 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
++ LI Y G D + EEM+ G+ P++ TYN L+ + R K ++ ++T
Sbjct: 404 YNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT 463
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
GL P+ T+ L+ Y R + +EM + G++ YN ++ G
Sbjct: 464 SKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLK 522
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
A + M+ + + +++ ++ S +GK+ +A + NEMLE G PN
Sbjct: 523 AATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPN 575
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 131/335 (39%), Gaps = 72/335 (21%)
Query: 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186
L+ Y F+ ++ G K + ++ L+ + + R V+ +YKEM
Sbjct: 159 LVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK 218
Query: 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-----Y 241
+ PN T+ ++ A + V +MK G +V YNTL+ +G Y
Sbjct: 219 IQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMY 278
Query: 242 TDEA---------------------------------FEIFEDMKSSENCQPDSWTFSSM 268
+A ++F++M ++ +P+ +++S+
Sbjct: 279 KADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEM-LDQDVKPNVISYNSL 337
Query: 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328
I GK+SEA +M ++M+ AG +PNL +LI + K + + + G
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397
Query: 329 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 388
P R L++ + LGK+ + G+ +K EE + EG
Sbjct: 398 VPTTRMYNMLIDAYCK-----LGKIDD---------GFALK---EEMEREG--------- 431
Query: 389 FNSISKDVKKAYCNCLI-DLCVNLNLLENACKLLE 422
I DV NCLI LC N N +E A KL +
Sbjct: 432 ---IVPDV--GTYNCLIAGLCRNGN-IEAAKKLFD 460
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R GN+E A L+D+ K D F L++ Y G + +EM +G+KP +
Sbjct: 448 RNGNIEAAKKLFDQL-TSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHL 506
Query: 158 TYNNLLDTM---GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
TYN ++ G K ++T ++ + L N +Y LL+ Y + ED +
Sbjct: 507 TYNIVMKGYCKEGNLKAATNMRTQMEK--ERRLRMNVASYNVLLQGYSQKGKLEDANMLL 564
Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYT 242
EM EKG+ + Y + D G+
Sbjct: 565 NEMLEKGLVPNRITYEIVKEEMVDQGFV 592
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 34/274 (12%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
GN++ A + + R F +I Y +G+ L V++ M+ G P + T+
Sbjct: 568 GNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTF 627
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
N L++ + ++ + I EMT G+S N +TY +++ Y + ++
Sbjct: 628 NGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQN 687
Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS------------------------- 254
+G+ + + Y LL C G A + ++M +
Sbjct: 688 EGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWE 747
Query: 255 ---------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
E +PD T++S I+ CS G ++ A EM G +PN+ T+LI+
Sbjct: 748 AADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIK 807
Query: 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339
+ +A + + + +GI PD CLL
Sbjct: 808 GWARASLPEKALSCYEEMKAMGIKPDKAVYHCLL 841
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 7/219 (3%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
G+ AF + R +NE +D + L+K +G L V +EM A + N
Sbjct: 672 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 731
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
YN L+D R W+ + ++M G+ P+ +TY S + A +A EM+
Sbjct: 732 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 791
Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
G++ ++ Y TL+ A ++A +E+MK+ +PD + ++T R +
Sbjct: 792 ALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAM-GIKPDKAVYHCLLTSLLSRASI 850
Query: 279 SEA------EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
+EA + EM+EAG ++ +C K +
Sbjct: 851 AEAYIYSGVMTICKEMVEAGLIVDMGTAVHWSKCLCKIE 889
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 111/237 (46%), Gaps = 13/237 (5%)
Query: 126 TLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184
+L ++ T G N+ ++ +E++ KP+ + ++ GR + + ++ M
Sbjct: 282 SLQRILDTNGDNWQAVISAFEKIS----KPSRTEFGLMVKFYGRRGDMHRARETFERMRA 337
Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
G++P Y SL+ AY R ++ LS R+MKE+G+++S+ Y+ ++ + G+ +
Sbjct: 338 RGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEA 397
Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITIC-SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
A F++ K S + C +C + AEA+ EM E G + + + ++
Sbjct: 398 ADYWFDEAKRIHKTLNASIYGKIIYAHCQTC--NMERAEALVREMEEEGIDAPIAIYHTM 455
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360
+ Y + RL E G TP GCL+N+ T+ +GK+ + +E S
Sbjct: 456 MDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTK-----VGKISKALEVS 507
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 107/235 (45%), Gaps = 7/235 (2%)
Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
N+E A L E + T++ Y + L V++ +K G P ++TY
Sbjct: 429 NMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYG 488
Query: 161 ---NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
NL +G+ + +V + KE G+ N TY+ ++ + + + + +V+ +M
Sbjct: 489 CLINLYTKVGKISKALEVSRVMKE---EGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM 545
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
++GM+ V LYN +++ +G D A + ++M+ + +P + TF +I + G
Sbjct: 546 VKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRH-RPTTRTFMPIIHGYAKSGD 604
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
+ + +F+ M G P + LI + ++ + V L+ + G++ ++
Sbjct: 605 MRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANE 659
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 106/247 (42%), Gaps = 10/247 (4%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
++AG+ E A +D A+ ++ + + +I + N + + EM+ G+ +
Sbjct: 390 SKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPI 449
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216
Y+ ++D + ++K + + G +P TY L+ Y + L V R
Sbjct: 450 AIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRV 509
Query: 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276
MKE+G++ ++ Y+ ++ + AF +FEDM E +PD ++++I+ G
Sbjct: 510 MKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM-VKEGMKPDVILYNNIISAFCGMG 568
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
+ A EM + P +I Y K + D+ R+L + R CG
Sbjct: 569 NMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAK---SGDMRRSLEVFDMM------RRCG 619
Query: 337 CLLNVMT 343
C+ V T
Sbjct: 620 CVPTVHT 626
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 1/227 (0%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
AF +++ E + D ++ +I + GN D + +EM+ + +P T+ ++
Sbjct: 538 AFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIH 597
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
++ + ++ M G P +T+ L+ R E + + EM G+
Sbjct: 598 GYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSA 657
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
+ Y ++ A VG T +AFE F ++ +E D +T+ +++ C G++ A A+
Sbjct: 658 NEHTYTKIMQGYASVGDTGKAFEYFTRLQ-NEGLDVDIFTYEALLKACCKSGRMQSALAV 716
Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
EM N FV LI + + + + ++ + G+ PD
Sbjct: 717 TKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 763
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R G+V A L + + E + D + +++ I AG+ + EEM+A+GVKPN+
Sbjct: 741 RRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIK 800
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGE-----DTL 211
TY L+ RA P + + Y+EM G+ P+ Y LL + RA E +
Sbjct: 801 TYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 860
Query: 212 SVYREMKEKGM 222
++ +EM E G+
Sbjct: 861 TICKEMVEAGL 871
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 119/237 (50%), Gaps = 5/237 (2%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154
+ G + A LYD K IDP+ F S+LI + D +++E M + P
Sbjct: 341 VKEGKLVEAEKLYDEMI--KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 398
Query: 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
N++TYN L++ +AKR + +++EM+ GL N TY +L+ + +AR ++ V+
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458
Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 274
++M G+ ++ YNTLL G ++A +FE ++ S+ +P +T++ MI
Sbjct: 459 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTYNIMIEGMCK 517
Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
GKV + +F + G +P++ + ++I + + ++ ++ E G PD
Sbjct: 518 AGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 129/258 (50%), Gaps = 3/258 (1%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ G++++AF L ++ K + +ST+I + D LN++ EM+ GV+PN+I
Sbjct: 237 KRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVI 296
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY++L+ + +R + +M + ++PN T+ +L+ A+ + + +Y EM
Sbjct: 297 TYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
++ + + Y++L+ DEA +FE M S++C P+ T++++I C +
Sbjct: 357 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLINGFCKAK- 414
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 336
++ E +F EM + G N T+LI + +A+ D+ ++ G+ P+
Sbjct: 415 RIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYN 474
Query: 337 CLLNVMTQTPKEELGKLV 354
LL+ + + K E +V
Sbjct: 475 TLLDGLCKNGKLEKAMVV 492
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 1/208 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
F+ L+ FD +++ E+M+ +G+ N+ TYN L++ R + + +M
Sbjct: 88 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 147
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
G P+ T +SLL Y + D +++ +M E G + + TL+
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 207
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
EA + + M CQP+ T+ ++ RG + A + N+M A E N+ + +++
Sbjct: 208 EAVALVDRM-VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTV 266
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
I K + DD + + G+ P+
Sbjct: 267 IDSLCKYRHEDDALNLFTEMENKGVRPN 294
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 118/281 (41%), Gaps = 45/281 (16%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R + +A L + + S+L+ Y + + ++M +G +P+ I
Sbjct: 132 RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 191
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT------------------------ 193
T+ L+ + + + + M G PN T
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 251
Query: 194 -----------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
Y++++ + + R+ +D L+++ EM+ KG++ +V Y++L++ +
Sbjct: 252 EAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERW 311
Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
+A + DM + P+ TF+++I GK+ EAE +++EM++ +P++F +S
Sbjct: 312 SDASRLLSDMIERK-INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 370
Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
LI + R D+ + EL I+ D C NV+T
Sbjct: 371 LINGFCMHDRLDEA----KHMFELMISKD-----CFPNVVT 402
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253
Y +LR + +D + ++ M + S+ +N LL+ A + D + E M+
Sbjct: 53 YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112
Query: 254 SSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312
+ +T++ +I C CR ++S A A+ +M++ G+EP++ L+SL+ Y +R
Sbjct: 113 RL-GISHNLYTYNILIN-CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 170
Query: 313 TDDVVRALNRLPELGITPD 331
D V ++++ E+G PD
Sbjct: 171 ISDAVALVDQMVEMGYRPD 189
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 46/96 (47%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ G +E A +++ + K ++ +I+ AG + +++ + GVKP++I
Sbjct: 482 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVI 541
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193
YN ++ R + ++++M ++G P+ T
Sbjct: 542 IYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 4/243 (1%)
Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
K I+P+ F+ LI ++ GN D +Y+EM V PN +TYN++++ + R +
Sbjct: 239 KRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLY 298
Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
K + M G PN TY +L+ + + R ++ + +++ M +G + YNTL+
Sbjct: 299 DAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLI 358
Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
VG A +IF M S PD T ++ G++ A F++M E+
Sbjct: 359 HGYCQVGKLRVALDIFCWM-VSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEK 417
Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPKEELGK 352
+ +I KA + + RLP G+ PD R + +L + P+ E +
Sbjct: 418 YIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADE 477
Query: 353 LVE 355
L+
Sbjct: 478 LIR 480
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 7/215 (3%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D +F+ LI + L+V +M +G +P+++T+ +LL R ++
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLL-AMC 236
M +G PN Y +L+ G + GE L + EM++KG+ V YNTLL +C
Sbjct: 165 ILMVKSGYEPNVVVYNTLID--GLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC 222
Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
++D A + + MK S N PD TF+++I + +G + EA+ ++ EM+++ +PN
Sbjct: 223 YSGRWSDAARMLRDMMKRSIN--PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPN 280
Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
S+I R D + + + G P+
Sbjct: 281 NVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPN 315
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 102/215 (47%), Gaps = 5/215 (2%)
Query: 120 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177
+PN ++TLI G + L + EM+ G+ +++TYN LL + + R
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232
Query: 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237
+ ++M ++P+ T+ +L+ + + ++ +Y+EM + + + YN+++
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLC 292
Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPN 296
G +A + F D+ +S+ C P+ T++++I+ C R V E +F M GF +
Sbjct: 293 MHGRLYDAKKTF-DLMASKGCFPNVVTYNTLISGFCKFR-MVDEGMKLFQRMSCEGFNAD 350
Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+F +LI Y + + + + +TPD
Sbjct: 351 IFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 93/209 (44%), Gaps = 1/209 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
F+ L+ ++ + ++M+ G+ ++ ++ L+ R R ++ +M
Sbjct: 74 FTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMM 133
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
G P+ T+ SLL + D S+ M + G + +V +YNTL+ G +
Sbjct: 134 KLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELN 193
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
A E+ +M+ + D T+++++T G+ S+A M +M++ P++ T+L
Sbjct: 194 IALELLNEME-KKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTAL 252
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDD 332
I + K D+ + + + P++
Sbjct: 253 IDVFVKQGNLDEAQELYKEMIQSSVDPNN 281
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 1/195 (0%)
Query: 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196
F+ ++ EM P+++ + LL +R V ++M G+S + ++
Sbjct: 52 FEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTI 111
Query: 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256
L+ + R LSV +M + G + S+ + +LL V +AF + M S
Sbjct: 112 LIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS- 170
Query: 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316
+P+ ++++I G+++ A + NEM + G ++ +L+ + R D
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230
Query: 317 VRALNRLPELGITPD 331
R L + + I PD
Sbjct: 231 ARMLRDMMKRSINPD 245
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 1/209 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
F+ LI G +++ E+M G +PN ++YN LL + K+ + + M
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMV 406
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
G P+ TY ++L A + ED + + ++ KG + YNT++ A G T
Sbjct: 407 SRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTG 466
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
+A ++ ++M+ +++ +PD+ T+SS++ S GKV EA F+E G PN S+
Sbjct: 467 KAIKLLDEMR-AKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDD 332
+ K+++TD + L + G P++
Sbjct: 526 MLGLCKSRQTDRAIDFLVFMINRGCKPNE 554
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 1/234 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R V A L D R+ D ++ L+ G D + +M + G +PN+I
Sbjct: 251 RDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVI 310
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T+N +L +M R + + +M G SP+ T+ L+ R + + +M
Sbjct: 311 THNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM 370
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ G Q + YN LL D A E E M S C PD T+++M+T GK
Sbjct: 371 PQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM-VSRGCYPDIVTYNTMLTALCKDGK 429
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
V +A + N++ G P L ++I KA +T ++ L+ + + PD
Sbjct: 430 VEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPD 483
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 6/213 (2%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D ++ +I Y AG + L+V + M V P+++TYN +L ++ + + Q +
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVL 227
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
M P+ TY L+ A R + + EM+++G V YN L+
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
G DEA + DM SS CQP+ T + ++ ++CS G+ +AE + +ML GF P++
Sbjct: 288 GRLDEAIKFLNDMPSS-GCQPNVITHNIILRSMCS-TGRWMDAEKLLADMLRKGFSPSVV 345
Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
LI + + L ++P+ G P+
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 1/232 (0%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
+G ++ A + DR D ++ LI+ + + +EM+ G P+++T
Sbjct: 217 SGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVT 276
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
YN L++ + + R + +M +G PN T+ +LR+ D + +M
Sbjct: 277 YNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADML 336
Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
KG SV +N L+ G A +I E M CQP+S +++ ++ K+
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM-PQHGCQPNSLSYNPLLHGFCKEKKM 395
Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
A M+ G P++ +++ K + +D V LN+L G +P
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 58/125 (46%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+AG A L D R + + D +S+L+ G D + + E + +G++PN +
Sbjct: 461 KAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAV 520
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T+N+++ + ++++ + M + G PN +Y L+ ++ L + E+
Sbjct: 521 TFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
Query: 218 KEKGM 222
KG+
Sbjct: 581 CNKGL 585
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 98/231 (42%), Gaps = 12/231 (5%)
Query: 33 LSFYSKTSLQKRSVSLQE---TQSSNPTKHSQNPQYPHG--KTGSSPKSYIWVNPKSPRA 87
++F + L R++ + E P S NP HG K ++ ++ R
Sbjct: 351 INFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLL-HGFCKEKKMDRAIEYLERMVSRG 409
Query: 88 SKLKEKSYDT------RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 141
+Y+T + G VE A + ++ ++ ++T+I AG +
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469
Query: 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201
+ +EM+A +KP+ ITY++L+ + R + + + E G+ PN T+ S++
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL 529
Query: 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
++R + + M +G + + T Y L+ A G EA E+ ++
Sbjct: 530 CKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 4/172 (2%)
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
NN L M R + + M +G P+ +L+R + R + ++
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
G V YN +++ G + A + + M S PD T+++++ GK+
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLK 221
Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+A + + ML+ P++ T LI+ + ++ L+ + + G TPD
Sbjct: 222 QAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD 273
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 1/185 (0%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D F+T I + G + + ++ +M+ GV PN++T+N ++D +G R +
Sbjct: 272 DVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFK 331
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
++M + G+ P TY+ L++ RA+ D V +EM +KG +V +YN L+ +
Sbjct: 332 EKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEA 391
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299
G ++A EI +D+ S+ S T++++I G+ AE + EML GF N
Sbjct: 392 GSLNKAIEI-KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS 450
Query: 300 LTSLI 304
TS+I
Sbjct: 451 FTSVI 455
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 1/233 (0%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
AG ++ AF + +D +++TLI D +EM G+KP+ T
Sbjct: 531 AGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYT 590
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
Y+ L+ + + + + + NG+ P+ TY+ ++ +A E+ + EM
Sbjct: 591 YSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM 650
Query: 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278
K +Q + +YN L+ G A E+ EDMK + P+S T++S+I S +V
Sbjct: 651 SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMK-HKGISPNSATYTSLIKGMSIISRV 709
Query: 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
EA+ +F EM G EPN+F T+LI YGK + V L + + P+
Sbjct: 710 EEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN 762
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 1/227 (0%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
AF D + D +S LI + + +++ K G+ P++ TY+ ++D
Sbjct: 572 AFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMID 631
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
+A+R + + + EM + PN Y L+RAY R+ L + +MK KG+
Sbjct: 632 GCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 691
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
+ Y +L+ + + +EA +FE+M+ E +P+ + ++++I G++ + E +
Sbjct: 692 NSATYTSLIKGMSIISRVEEAKLLFEEMR-MEGLEPNVFHYTALIDGYGKLGQMVKVECL 750
Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
EM PN T +I Y + + R LN + E GI PD
Sbjct: 751 LREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPD 797
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 116/270 (42%), Gaps = 10/270 (3%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
+ G VE A L+ ++ E+ + PN F+T+I G G +D E+M G++P
Sbjct: 285 KGGKVEEAVKLF--SKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPT 342
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
+ITY+ L+ + RAKR + KEMT G PN Y +L+ ++ A + +
Sbjct: 343 LITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKD 402
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
M KG+ L+ + YNTL+ G D A + ++M S + +F+S+I +
Sbjct: 403 LMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSI-GFNVNQGSFTSVICLLCSH 461
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
A EML P +LT+LI K + + + G D R
Sbjct: 462 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS 521
Query: 336 GCLLNVMTQTPKEELGKLVECVEKSNSKLG 365
LL+ + E GKL E LG
Sbjct: 522 NALLHGLC-----EAGKLDEAFRIQKEILG 546
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 1/208 (0%)
Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
VE A +D + D +S +I A + ++EM + V+PN + YN+
Sbjct: 604 VEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNH 663
Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
L+ R+ R + ++M G+SPN TY SL++ E+ ++ EM+ +G
Sbjct: 664 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 723
Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
++ +V Y L+ +G + + +M S +N P+ T++ MI + G V+EA
Sbjct: 724 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHS-KNVHPNKITYTVMIGGYARDGNVTEA 782
Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGK 309
+ NEM E G P+ I Y K
Sbjct: 783 SRLLNEMREKGIVPDSITYKEFIYGYLK 810
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 119 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
+ PN ++ LI+ Y +G L + E+MK G+ PN TY +L+ M R + K
Sbjct: 654 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 713
Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
+++EM GL PN Y +L+ YG+ + REM K + + Y ++
Sbjct: 714 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 773
Query: 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
A G EA + +M+ + PDS T+ I +G V EA
Sbjct: 774 ARDGNVTEASRLLNEMR-EKGIVPDSITYKEFIYGYLKQGGVLEA 817
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 105/272 (38%), Gaps = 34/272 (12%)
Query: 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176
+ ++ +F+++I L + FD L EM + P L+ + + + +
Sbjct: 444 FNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAL 503
Query: 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236
++ + + G + T +LL A ++ + +E+ +G + YNTL++ C
Sbjct: 504 ELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGC 563
Query: 237 ADVGYTDEAFEIFEDM-----------------------KSSENCQ-----------PDS 262
DEAF ++M K E Q PD
Sbjct: 564 CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDV 623
Query: 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322
+T+S MI C + E + F+EM+ +PN V LI+ Y ++ R +
Sbjct: 624 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRED 683
Query: 323 LPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
+ GI+P+ L+ M+ + E KL+
Sbjct: 684 MKHKGISPNSATYTSLIKGMSIISRVEEAKLL 715
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
R+G + MA L + +++ I PN+ +++LIK + ++EEM+ G++PN
Sbjct: 670 RSGRLSMALELREDMKHKG--ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 727
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
+ Y L+D G+ + +V+ + +EM + PN TY ++ Y R + +
Sbjct: 728 VFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLN 787
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247
EM+EKG+ Y + G EAF+
Sbjct: 788 EMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 819
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 111/270 (41%), Gaps = 36/270 (13%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
TRA + A+ + + + + ++ LI + AG+ + + + + M + G+
Sbjct: 354 TRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTS 413
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-------------------- 196
TYN L+ + + + + KEM G + N ++ S
Sbjct: 414 STYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGE 473
Query: 197 -LLRAY------------GRARYGEDT--LSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241
LLR G ++G+ + L ++ + KG + N LL + G
Sbjct: 474 MLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK 533
Query: 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301
DEAF I +++ C D +++++I+ C + K+ EA +EM++ G +P+ + +
Sbjct: 534 LDEAFRIQKEI-LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYS 592
Query: 302 SLIQCYGKAQRTDDVVRALNRLPELGITPD 331
LI + ++ ++ + G+ PD
Sbjct: 593 ILICGLFNMNKVEEAIQFWDDCKRNGMLPD 622
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269
L V+ + KGM S T N LL + E F+ + + PD + F++ I
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV--CKGVSPDVYLFTTAI 280
Query: 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329
GKV EA +F++M EAG PN+ ++I G R D+ ++ E G+
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGME 340
Query: 330 P 330
P
Sbjct: 341 P 341
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 12/278 (4%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
A L + ++ + +S LI G + ++++ +M G KPN++ Y+ L+D
Sbjct: 346 AVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVD 405
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
+ R +P + K I M +G PN TY+SL++ + + E+ + V++EM + G
Sbjct: 406 GLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSR 465
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
+ Y+ L+ VG EA ++ M + +PD+ +SS+I G + A +
Sbjct: 466 NKFCYSVLIDGLCGVGRVKEAMMVWSKMLTI-GIKPDTVAYSSIIKGLCGIGSMDAALKL 524
Query: 285 FNEML---EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
++EML E +P++ L+ + V LN + + G PD C LN
Sbjct: 525 YHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNT 584
Query: 342 MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379
+++ +K S L +V LL+ Q + G
Sbjct: 585 LSEKSNS--------CDKGRSFLEELVVRLLKRQRVSG 614
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 3/213 (1%)
Query: 121 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
PN ++TLI G D +++ E M + PN +TY L++ + + +R +
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRL 349
Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
M + G N + Y+ L+ + E+ +S++R+M EKG + ++ +Y+ L+
Sbjct: 350 LSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCR 409
Query: 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298
G +EA EI M +S C P+++T+SS++ G EA ++ EM + G N F
Sbjct: 410 EGKPNEAKEILNRMIAS-GCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKF 468
Query: 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ LI R + + +++ +GI PD
Sbjct: 469 CYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPD 501
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 111/234 (47%), Gaps = 2/234 (0%)
Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
++ A L D ++E P ++ LI G+ + + M G PN +TYN
Sbjct: 238 IDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNT 297
Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
L+ + + + ++ + M + PN TY +L+ + R D + + M+E+G
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357
Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
L+ +Y+ L++ G +EA ++ M + + C+P+ +S ++ GK +EA
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKM-AEKGCKPNIVVYSVLVDGLCREGKPNEA 416
Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335
+ + N M+ +G PN + +SL++ + K ++ V+ + + G + ++FC
Sbjct: 417 KEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCS-RNKFC 469
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 99/236 (41%), Gaps = 11/236 (4%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ G E A L+ + + + + +S L+ G + + M A G PN
Sbjct: 374 KEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAY 433
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY++L+ + + ++KEM G S N Y+ L+ ++ + V+ +M
Sbjct: 434 TYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKM 493
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQPDSWTFSSMITICSCR 275
G++ Y++++ +G D A +++ +M E QPD T++ ++ +
Sbjct: 494 LTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQ 553
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD---------VVRALNR 322
+S A + N ML+ G +P++ + + + + D VVR L R
Sbjct: 554 KDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKR 609
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 106/228 (46%), Gaps = 6/228 (2%)
Query: 105 AFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM----KAIGVKPNMITY 159
A L+ R +E + + +F++++ + G + L Y+ + + + PN +++
Sbjct: 131 AVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSF 190
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219
N ++ + + + + +++ M + P+ TY +L+ + ++ + + EM+
Sbjct: 191 NLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQS 250
Query: 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279
+G S +YN L+ G ++ ++M + C P+ T++++I +GK+
Sbjct: 251 EGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM-FLKGCVPNEVTYNTLIHGLCLKGKLD 309
Query: 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327
+A ++ M+ + PN +LI K +R D VR L+ + E G
Sbjct: 310 KAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 2/231 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
F+ +K + A + ++E MK K + T N LLD++GRAK + + ++ ++
Sbjct: 232 FTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
+ +PN TY LL + R R + ++ +M + G++ + +N +L
Sbjct: 292 ER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKS 350
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
+A ++F MKS C P+ +++ MI + + A F++M+++G +P+ V T L
Sbjct: 351 DAIKLFHVMKSKGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL 409
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
I +G ++ D V L + E G PD + L+ +M E G +
Sbjct: 410 ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 460
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 2/250 (0%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
A G+++ + K++I + L+ G A +++++K PNM+TY LL+
Sbjct: 248 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKE-RFTPNMMTYTVLLN 306
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
R + + I+ +M D+GL P+ + +L R+ D + ++ MK KG
Sbjct: 307 GWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCP 366
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
+V Y ++ + A E F+DM S QPD+ ++ +IT + K+ +
Sbjct: 367 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITGFGTQKKLDTVYEL 425
Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
EM E G P+ +LI+ + + R N++ + I P ++
Sbjct: 426 LKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFV 485
Query: 345 TPKEELGKLV 354
E+G+ V
Sbjct: 486 ARNYEMGRAV 495
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ ++E A +D + + D ++ LI +GT D + +EM+ G P+
Sbjct: 380 KQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGK 439
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TYN L+ M K P IY +M N + P+ +T+ ++++Y AR E +V+ EM
Sbjct: 440 TYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEM 499
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
+KG+ Y L+ G + EA E+M
Sbjct: 500 IKKGICPDDNSYTVLIRGLISEGKSREACRYLEEM 534
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 86/177 (48%), Gaps = 5/177 (2%)
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TYN+++ + + ++ + ++ +EM GL T+ ++A+ A+ + + ++ M
Sbjct: 197 TYNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELM 255
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 276
K+ ++ V N LL EA +F+ +K E P+ T++ ++ C R
Sbjct: 256 KKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK--ERFTPNMMTYTVLLNGWCRVRN 313
Query: 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333
+ EA ++N+M++ G +P++ +++ ++ + D ++ + + G P+ R
Sbjct: 314 LI-EAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVR 369
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 130/273 (47%), Gaps = 10/273 (3%)
Query: 97 TRAGNVEMAFGLYDRARN-EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
+R+G + AF L +R ++ + D + +S LIK + FD ++ +M+ G++PN
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255
Query: 156 MITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214
ITYN L+D G+AK +++ T+ + + ++ P+ T S LRA+G E + Y
Sbjct: 256 TITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCY 315
Query: 215 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW---TFSSMITI 271
+ + G++ ++ +N LL G + + E M+ SW T++ +I
Sbjct: 316 EKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHY----SWTIVTYNVVIDA 371
Query: 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
G + + E +F M P+ L SL++ YG+A + D + L + I D
Sbjct: 372 FGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLD 431
Query: 332 DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363
F CL++ + K E+ ++E +EK K
Sbjct: 432 LVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFK 464
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 36/180 (20%)
Query: 133 TAGNFDGCLNVYEEMK-AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 191
TA ++ + V+E ++ + KPN+ Y L+ +G+ K+P + +++EM + G N
Sbjct: 126 TALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNH 185
Query: 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251
Y +L+ AY R+ G D AF + E
Sbjct: 186 EVYTALVSAYSRS-----------------------------------GRFDAAFTLLER 210
Query: 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311
MKSS NCQPD T+S +I + + + ++M G PN +LI YGKA+
Sbjct: 211 MKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAK 270
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 5/195 (2%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
G +EM Y++ ++ I+PN F+ L+ YG +GN+ V E M+ ++
Sbjct: 306 GQIEMMENCYEKFQSSG--IEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIV 363
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TYN ++D GRA Q++ +++ M + P+ T SL+RAYGRA + V R +
Sbjct: 364 TYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFI 423
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ ++L + +N L+ + E + E M+ + +PD T+ +M+ G
Sbjct: 424 ENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELME-KKGFKPDKITYRTMVKAYRISGM 482
Query: 278 VSEAEAMFNEMLEAG 292
+ + + + G
Sbjct: 483 TTHVKELHGVVESVG 497
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
RA + G+ N R+D F+ L+ YG F V E M+ G KP+ I
Sbjct: 409 RASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKI 468
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEM 182
TY TM +A R + T KE+
Sbjct: 469 TYR----TMVKAYRISGMTTHVKEL 489
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 2/231 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
F+ +K + A + ++E MK K + T N LLD++GRAK + + ++ ++
Sbjct: 231 FTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK 290
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
+ +PN TY LL + R R + ++ +M + G++ + +N +L
Sbjct: 291 ER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKS 349
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
+A ++F MKS C P+ +++ MI + + A F++M+++G +P+ V T L
Sbjct: 350 DAIKLFHVMKSKGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL 408
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 354
I +G ++ D V L + E G PD + L+ +M E G +
Sbjct: 409 ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 459
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 2/250 (0%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
A G+++ + K++I + L+ G A +++++K PNM+TY LL+
Sbjct: 247 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKE-RFTPNMMTYTVLLN 305
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
R + + I+ +M D+GL P+ + +L R+ D + ++ MK KG
Sbjct: 306 GWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCP 365
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
+V Y ++ + A E F+DM S QPD+ ++ +IT + K+ +
Sbjct: 366 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITGFGTQKKLDTVYEL 424
Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
EM E G P+ +LI+ + + R N++ + I P ++
Sbjct: 425 LKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFV 484
Query: 345 TPKEELGKLV 354
E+G+ V
Sbjct: 485 ARNYEMGRAV 494
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ ++E A +D + + D ++ LI +GT D + +EM+ G P+
Sbjct: 379 KQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGK 438
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TYN L+ M K P IY +M N + P+ +T+ ++++Y AR E +V+ EM
Sbjct: 439 TYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEM 498
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
+KG+ Y L+ G + EA E+M
Sbjct: 499 IKKGICPDDNSYTVLIRGLISEGKSREACRYLEEM 533
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
G + + TY S++ + R E +SV EM KG+ L++ + + A +
Sbjct: 188 QGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKK 246
Query: 245 AFEIFEDMKSSE--------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
A IFE MK + NC DS + + GK EA+ +F+++ E F PN
Sbjct: 247 AVGIFELMKKYKFKIGVETINCLLDSLGRAKL-------GK--EAQVLFDKLKER-FTPN 296
Query: 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ T L+ + + + + R N + + G+ PD
Sbjct: 297 MMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPD 331
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 38/245 (15%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ--------- 174
++ +IK YG + + + ++E M + GV P+ TYN L+ + A P +
Sbjct: 508 YNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMR 567
Query: 175 --------------------------VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208
+ +YKEM + + P+ Y L+ A+ +
Sbjct: 568 ETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQ 627
Query: 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ--PDSWTFS 266
+S MKE G+ + +YN+L+ + VGY DEA I+ + S N PD +T +
Sbjct: 628 QAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSN 687
Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
MI + S R V +AEA+F+ M + G E N F ++ Y K R ++ + ++ E+
Sbjct: 688 CMINLYSERSMVRKAEAIFDSMKQRG-EANEFTFAMMLCMYKKNGRFEEATQIAKQMREM 746
Query: 327 GITPD 331
I D
Sbjct: 747 KILTD 751
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 9/216 (4%)
Query: 136 NFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
+++ + ++E K+ G + N+I YN +L +G+A + V++++ EM G+ P +TY
Sbjct: 166 HWERAVEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTY 225
Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254
+L+ Y + L +M + GMQ +L M +A E F+
Sbjct: 226 GTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSC 285
Query: 255 SENCQPD------SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308
EN + D S+T+++MI G++ EA F MLE G P ++I YG
Sbjct: 286 DEN-KADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYG 344
Query: 309 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
+ +V +L + +L PD R L+++ T+
Sbjct: 345 NNGQLGEVT-SLMKTMKLHCAPDTRTYNILISLHTK 379
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 5/226 (2%)
Query: 110 DRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169
++ R + D + +I + G + VY+EM ++P+++ Y L++
Sbjct: 564 EKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADT 623
Query: 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE---KGMQLSV 226
Q + + M + G+ N Y SL++ Y + Y ++ ++YR++ + K V
Sbjct: 624 GNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDV 683
Query: 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286
N ++ + ++ +A IF+ MK + + + +TF+ M+ + G+ EA +
Sbjct: 684 YTSNCMINLYSERSMVRKAEAIFDSMK--QRGEANEFTFAMMLCMYKKNGRFEEATQIAK 741
Query: 287 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332
+M E + S++ + R + V + GI PDD
Sbjct: 742 QMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDD 787
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 106/247 (42%), Gaps = 8/247 (3%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
++G ++ A + R E F+T+I +YG G ++ + MK + P+
Sbjct: 310 KSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK-LHCAPDTR 368
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TYN L+ + + +KEM D+GL P+ +Y +LL A+ E+ + EM
Sbjct: 369 TYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEM 428
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ +++ + L M + ++++ F+ + N + +S+ I RG
Sbjct: 429 DDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEG--YSANIDAYGERGY 486
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
+SEAE +F E + + +I+ YG ++ + + G+TPD C
Sbjct: 487 LSEAERVFICCQEVN-KRTVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDK----C 541
Query: 338 LLNVMTQ 344
N + Q
Sbjct: 542 TYNTLVQ 548
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 5/225 (2%)
Query: 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182
+S I YG G V+ + + K +I YN ++ G +K + +++ M
Sbjct: 473 GYSANIDAYGERGYLSEAERVFICCQEVN-KRTVIEYNVMIKAYGISKSCEKACELFESM 531
Query: 183 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242
G++P+ TY +L++ A +M+E G Y +++ +G
Sbjct: 532 MSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQL 591
Query: 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302
+ A E++++M N +PD + +I + G V +A + M EAG N + S
Sbjct: 592 NMAEEVYKEM-VEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNS 650
Query: 303 LIQCYGKAQRTDD---VVRALNRLPELGITPDDRFCGCLLNVMTQ 344
LI+ Y K D+ + R L + PD C++N+ ++
Sbjct: 651 LIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSE 695
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 5/230 (2%)
Query: 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 156
+ G + MA +Y D + LI + GN ++ E MK G+ N
Sbjct: 586 VKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNS 645
Query: 157 ITYNNLLDTMGRAKRPWQVKTIYKEM---TDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213
+ YN+L+ + + + IY+++ + P+ T ++ Y ++
Sbjct: 646 VIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAI 705
Query: 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273
+ MK++G T + +L M G +EA +I + M+ + D +++S++ + +
Sbjct: 706 FDSMKQRGEANEFT-FAMMLCMYKKNGRFEEATQIAKQMREMK-ILTDPLSYNSVLGLFA 763
Query: 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323
G+ EA F EM+ +G +P+ SL K + VR + +
Sbjct: 764 LDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEI 813
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 14/217 (6%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
++ ++++ G A + ++++EM G+KP TY L+D + +M+
Sbjct: 190 YNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMS 249
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE------MKEKGMQLSVTLYNTLLAMCA 237
G+ P+ T +L+ Y +AR + +++ + + LS YNT++
Sbjct: 250 KIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYG 309
Query: 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297
G EA E F+ M E P + TF++MI I G++ E ++ M + P+
Sbjct: 310 KSGQIKEASETFKRM-LEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTM-KLHCAPDT 367
Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPD 331
LI + K +D+ RA E+ G+ PD
Sbjct: 368 RTYNILISLHTK---NNDIERAGAYFKEMKDDGLKPD 401
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 98/259 (37%), Gaps = 34/259 (13%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D ++ LI L+ + + ++EMK G+KP+ ++Y LL + + +
Sbjct: 366 DTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLI 425
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK------------------EKG 221
EM D+ + + T ++L R Y A E + S ++ E+G
Sbjct: 426 AEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEGYSANIDAYGERG 485
Query: 222 M---------------QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266
+ +V YN ++ ++A E+FE M S PD T++
Sbjct: 486 YLSEAERVFICCQEVNKRTVIEYNVMIKAYGISKSCEKACELFESMMSY-GVTPDKCTYN 544
Query: 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326
+++ I + + +M E G+ + ++I + K + + + E
Sbjct: 545 TLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEY 604
Query: 327 GITPDDRFCGCLLNVMTQT 345
I PD G L+N T
Sbjct: 605 NIEPDVVVYGVLINAFADT 623
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/139 (17%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
V A ++D + ++ + F+ ++ +Y G F+ + ++M+ + + + ++YN+
Sbjct: 699 VRKAEAIFDSMK-QRGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNS 757
Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
+L R + +KEM +G+ P+ +T+ SL + + + E+++K
Sbjct: 758 VLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEIRKKE 817
Query: 222 MQLSVTLYNTLLAMCADVG 240
++ + L+ + L+ +G
Sbjct: 818 IKRGLELWISTLSSLVGIG 836
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 6/159 (3%)
Query: 121 PNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178
P+ +++ +I LY +++ MK G + N T+ +L + R + I
Sbjct: 681 PDVYTSNCMINLYSERSMVRKAEAIFDSMKQRG-EANEFTFAMMLCMYKKNGRFEEATQI 739
Query: 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238
K+M + + + +Y S+L + ++ + ++EM G+Q + + +L +
Sbjct: 740 AKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMK 799
Query: 239 VGYTDEAFEIFEDMKSSENCQP-DSW--TFSSMITICSC 274
+G + +A E+++ E + + W T SS++ I C
Sbjct: 800 LGMSKKAVRKIEEIRKKEIKRGLELWISTLSSLVGIGDC 838
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 129/260 (49%), Gaps = 7/260 (2%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
+ G++++A L + E+ +I+P ++T+I N + LN++ EM G++PN
Sbjct: 233 KRGDIDLALSLLKKM--EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
++TYN+L+ + R + +M + ++PN T+++L+ A+ + + +Y
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 350
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSC 274
EM ++ + + Y++L+ DEA +FE M S++C P+ T++++I C
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKA 409
Query: 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334
+ +V E +F EM + G N T+LI + +A+ D+ ++ G+ PD
Sbjct: 410 K-RVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMT 468
Query: 335 CGCLLNVMTQTPKEELGKLV 354
LL+ + K E +V
Sbjct: 469 YSILLDGLCNNGKVETALVV 488
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 122/254 (48%), Gaps = 7/254 (2%)
Query: 80 VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAF--STLIKLYGTAGNF 137
+NP S L + + G + A LYD K IDP+ F S+LI +
Sbjct: 322 INPNVVTFSALIDAF--VKEGKLVEAEKLYDEM--IKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197
D +++E M + PN++TYN L+ +AKR + +++EM+ GL N TY +L
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257
+ + +AR ++ V+++M G+ + Y+ LL + G + A +FE ++ S+
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK- 496
Query: 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317
+PD +T++ MI GKV + +F + G +PN+ T+++ + + ++
Sbjct: 497 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEAD 556
Query: 318 RALNRLPELGITPD 331
+ E G PD
Sbjct: 557 ALFREMKEEGPLPD 570
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 117/287 (40%), Gaps = 12/287 (4%)
Query: 53 SSNPTKHSQNPQYPHGKTGSSPKSY----IWVNPKSPRASKLKEKSY----DTRAGNVEM 104
SS + GK G++P S+ WV S ++ S D + +
Sbjct: 8 SSTGNRFVHRSLLGKGKCGTAPPSFSHCSFWVRDFSGVRYDYRKISINRLNDLKLDDAVN 67
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
FG ++R ++ FS L+ FD +++ E+M+ +G+ N+ TY+ L++
Sbjct: 68 LFGDMVKSRPFPSIVE---FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILIN 124
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
R + + +M G P+ T SLL + D +S+ +M E G Q
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
+NTL+ EA + + M + CQPD T+ ++ RG + A ++
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRM-VVKGCQPDLVTYGIVVNGLCKRGDIDLALSL 243
Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+M + EP + + ++I + +D + + GI P+
Sbjct: 244 LKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 111/266 (41%), Gaps = 36/266 (13%)
Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
NV A L+ N+ R + +++LI+ G + + +M + PN++T++
Sbjct: 271 NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFS 330
Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS------------------------ 196
L+D + + + + +Y EM + P+ TY+S
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 390
Query: 197 -----------LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245
L++ + +A+ ++ + ++REM ++G+ + Y TL+ D A
Sbjct: 391 DCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNA 450
Query: 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305
+F+ M S+ PD T+S ++ GKV A +F + + EP+++ +I+
Sbjct: 451 QIVFKQM-VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIE 509
Query: 306 CYGKAQRTDDVVRALNRLPELGITPD 331
KA + +D L G+ P+
Sbjct: 510 GMCKAGKVEDGWDLFCSLSLKGVKPN 535
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D +S L+ G + L V+E ++ ++P++ TYN +++ M +A + ++
Sbjct: 465 DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 524
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
++ G+ PN TY +++ + R E+ +++REMKE+G YNTL+
Sbjct: 525 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRD 584
Query: 240 GYTDEAFEIFEDMKS 254
G + E+ +M+S
Sbjct: 585 GDKAASAELIREMRS 599
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
G VE A +++ + K D ++ +I+ AG + +++ + GVKPN++TY
Sbjct: 480 GKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTY 539
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
++ R + +++EM + G P+ TY +L+RA+ R + + REM+
Sbjct: 540 TTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMR 598
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 108/220 (49%), Gaps = 2/220 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
F+ +K + A + ++E MK K + T N LLD++GRAK + + ++ ++
Sbjct: 232 FTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
+ +PN TY LL + R R + ++ +M ++G++ + +N +L
Sbjct: 292 ER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKS 350
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
+A ++F MKS C P+ +++ MI + + A F++M+++G +P+ V T L
Sbjct: 351 DAIKLFHVMKSKGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL 409
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343
I +G ++ D V L + E G PD + L+ +M
Sbjct: 410 ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMA 449
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 2/250 (0%)
Query: 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164
A G+++ + K++I + L+ G A +++++K PNM+TY LL+
Sbjct: 248 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKE-RFTPNMMTYTVLLN 306
Query: 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224
R + + I+ +M D GL P+ + +L R+R D + ++ MK KG
Sbjct: 307 GWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCP 366
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284
+V Y ++ + A E F+DM S QPD+ ++ +IT + K+ +
Sbjct: 367 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITGFGTQKKLDTVYEL 425
Query: 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344
EM E G P+ +LI+ + + R N++ + I P ++
Sbjct: 426 LKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFM 485
Query: 345 TPKEELGKLV 354
E+G+ V
Sbjct: 486 ARNYEMGRAV 495
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 110/228 (48%), Gaps = 8/228 (3%)
Query: 108 LYDRARNEKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 165
L+D+ K R PN + + L G N ++ +M G+KP+++ +N +L+
Sbjct: 286 LFDKL---KERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEG 342
Query: 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 225
+ R+++ ++ M G PN +Y ++R + + E + + +M + G+Q
Sbjct: 343 LLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402
Query: 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285
+Y L+ D +E+ ++M+ + PD T++++I + + + A ++
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNALIKLMANQKMPEHATRIY 461
Query: 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDD 332
N+M++ EP++ +++ Y A R ++ RA+ + + GI PDD
Sbjct: 462 NKMIQNEIEPSIHTFNMIMKSYFMA-RNYEMGRAVWEEMIKKGICPDD 508
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ ++E A +D + + D ++ LI +GT D + +EM+ G P+
Sbjct: 380 KQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGK 439
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TYN L+ M K P IY +M N + P+ +T+ ++++Y AR E +V+ EM
Sbjct: 440 TYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEM 499
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252
+KG+ Y L+ G + EA E+M
Sbjct: 500 IKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEM 534
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D ++ LIKL + +Y +M ++P++ T+N ++ + A+ + ++
Sbjct: 437 DGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVW 496
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
+EM G+ P+ N+Y L+R + EM +KGM+ + YN A
Sbjct: 497 EEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRG 556
Query: 240 GYTDEAFEIFEDM 252
G EIFE++
Sbjct: 557 GQP----EIFEEL 565
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 17/154 (11%)
Query: 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244
G + + TY S++ + R E +SV EM KG+ L++ + + A +
Sbjct: 189 QGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKK 247
Query: 245 AFEIFEDMKSSENCQPDSWTFSSMITICSC------RGKVS-EAEAMFNEMLEAGFEPNL 297
A IFE MK + F + +C R K+ EA+ +F+++ E F PN+
Sbjct: 248 AVGIFELMK--------KYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNM 298
Query: 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
T L+ + + + + R N + + G+ PD
Sbjct: 299 MTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPD 332
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 119/269 (44%), Gaps = 37/269 (13%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ G +E A + + + K + ++ LIK Y N + V +M V P+++
Sbjct: 405 KRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY-CKSNVHKAMGVLNKMLERKVLPDVV 463
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TYN+L+D R+ + M D GL P+ TY S++ + +++ E+ ++ +
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
++KG+ +V +Y L+ G DEA + E M S+NC P+S TF+++I GK
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM-LSKNCLPNSLTFNALIHGLCADGK 582
Query: 278 VSEAEAM-----------------------------------FNEMLEAGFEPNLFVLTS 302
+ EA + F +ML +G +P+ T+
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642
Query: 303 LIQCYGKAQRTDDVVRALNRLPELGITPD 331
IQ Y + R D + ++ E G++PD
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPD 671
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 114/231 (49%), Gaps = 2/231 (0%)
Query: 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160
+++ AF +++ + R + A++ LI A D ++++ +MK P + TY
Sbjct: 268 DLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYT 327
Query: 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220
L+ ++ ++R + + KEM + G+ PN +TY L+ + E + +M EK
Sbjct: 328 VLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEK 387
Query: 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280
G+ +V YN L+ G ++A ++ E M+S + P++ T++ +I C+ V +
Sbjct: 388 GLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK-LSPNTRTYNELIK-GYCKSNVHK 445
Query: 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
A + N+MLE P++ SLI ++ D R L+ + + G+ PD
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 37/268 (13%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
A ++ A L+ + ++++ ++ LIK + LN+ +EM+ G+KPN+ T
Sbjct: 301 ARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHT 360
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV----- 213
Y L+D++ + + + + +M + GL PN TY +L+ Y + ED + V
Sbjct: 361 YTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELME 420
Query: 214 ----------YRE-------------------MKEKGMQLSVTLYNTLLAMCADVGYTDE 244
Y E M E+ + V YN+L+ G D
Sbjct: 421 SRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDS 480
Query: 245 AFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
A+ + M + PD WT++SMI ++C + +V EA +F+ + + G PN+ + T+L
Sbjct: 481 AYRLLSLM-NDRGLVPDQWTYTSMIDSLCKSK-RVEEACDLFDSLEQKGVNPNVVMYTAL 538
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
I Y KA + D+ L ++ P+
Sbjct: 539 IDGYCKAGKVDEAHLMLEKMLSKNCLPN 566
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 122/282 (43%), Gaps = 13/282 (4%)
Query: 60 SQNPQYPHGKTGSSPKSYIWVNPKSP----RASKLKEKSYDTRAGNVEMAFGLYDRARNE 115
SQNP+Y H + + +N + L KS D+ G+ L + +
Sbjct: 114 SQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDS-VGDALYVLDLCRKMNKD 172
Query: 116 -----KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170
K+++ ++TL+ G D VY EM V PN+ TYN +++ +
Sbjct: 173 ERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLG 232
Query: 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230
+ ++ + GL P++ TY SL+ Y + + + V+ EM KG + + Y
Sbjct: 233 NVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYT 292
Query: 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEML 289
L+ DEA ++F MK E C P T++ +I ++C K SEA + EM
Sbjct: 293 HLIHGLCVARRIDEAMDLFVKMKDDE-CFPTVRTYTVLIKSLCGSERK-SEALNLVKEME 350
Query: 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
E G +PN+ T LI + + L ++ E G+ P+
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 40/235 (17%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 155
++ VE A L+D E+ ++PN ++ LI Y AG D + E+M + PN
Sbjct: 509 KSKRVEEACDLFDSL--EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPN 566
Query: 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215
+T+N L+ + + + + ++M GL P +T DT+ ++R
Sbjct: 567 SLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVST---------------DTILIHR 611
Query: 216 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275
+K+ G D A+ F+ M SS +PD+ T+++ I
Sbjct: 612 LLKD--------------------GDFDHAYSRFQQMLSS-GTKPDAHTYTTFIQTYCRE 650
Query: 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330
G++ +AE M +M E G P+LF +SLI+ YG +T+ L R+ + G P
Sbjct: 651 GRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEP 705
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 135 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
G+FD + +++M + G KP+ TY + T R R + + +M +NG+SP+ TY
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675
Query: 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAM------------CA- 237
+SL++ YG V + M++ G + S ++L LL M CA
Sbjct: 676 SSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAM 735
Query: 238 -DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLE-AGFE 294
++ D E+ E M + P++ ++ +I IC G + AE +F+ M G
Sbjct: 736 SNMMEFDTVVELLEKM-VEHSVTPNAKSYEKLILGICEV-GNLRVAEKVFDHMQRNEGIS 793
Query: 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 351
P+ V +L+ C K ++ ++ + ++ + +G P C L+ + + ++E G
Sbjct: 794 PSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERG 850
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 143/297 (48%), Gaps = 2/297 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
+ G++++AF L ++ K D F+T+I + D LN+++EM+ G++PN++
Sbjct: 162 KRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 221
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
TY++L+ + R + +M + ++PN T+ +L+ A+ + + ++ +M
Sbjct: 222 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDM 281
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
++ + + YN+L+ D+A ++FE M S++C PD T++++I +
Sbjct: 282 IKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM-VSKDCFPDLDTYNTLIKGFCKSKR 340
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337
V + +F EM G + T+LIQ D+ + ++ G+ PD
Sbjct: 341 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 400
Query: 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393
LL+ + K E+ ++ + ++KS KL + + E + + +LF S+S
Sbjct: 401 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS 457
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 105/234 (44%), Gaps = 1/234 (0%)
Query: 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 157
R + +A L + + S+L+ Y + + ++M +G +P+ I
Sbjct: 57 RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 116
Query: 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217
T+ L+ + + + + M G PN TY ++ + + ++ +M
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176
Query: 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277
+ ++ V ++NT++ + D+A +F++M+ ++ +P+ T+SS+I+ G+
Sbjct: 177 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME-TKGIRPNVVTYSSLISCLCSYGR 235
Query: 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
S+A + ++M+E PNL +LI + K + + + + + + I PD
Sbjct: 236 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPD 289
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 3/218 (1%)
Query: 116 KWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
K IDP+ F+ +LI + D ++E M + P++ TYN L+ ++KR
Sbjct: 283 KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVE 342
Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
+++EM+ GL + TY +L++ ++ V+++M G+ + Y+ LL
Sbjct: 343 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 402
Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
+ G ++A E+F+ M+ SE + D + +++MI GKV + +F + G
Sbjct: 403 DGLCNNGKLEKALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 461
Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+PN+ ++I + + L ++ E G PD
Sbjct: 462 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 499
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 1/208 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
F+ L+ FD +++ E+M+ +G+ N+ TYN L++ R + + +M
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
G P+ T +SLL Y + D +++ +M E G + + TL+
Sbjct: 73 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
EA + + M CQP+ T+ ++ RG + A + N+M A E ++ + ++
Sbjct: 133 EAVALVDRM-VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 191
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPD 331
I K + DD + + GI P+
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPN 219
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 64/119 (53%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
G +E A ++D + + ++D ++T+I+ AG D +++ + GVKPN++TY
Sbjct: 409 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 468
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
N ++ + + + + K+M ++G P+ TY +L+RA+ R + + REM+
Sbjct: 469 NTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMR 527
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 84/174 (48%), Gaps = 1/174 (0%)
Query: 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 179
D ++TLI+ G+ D V+++M + GV P+++TY+ LLD + + + ++
Sbjct: 359 DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF 418
Query: 180 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239
M + + + Y +++ +A +D ++ + KG++ +V YNT+++
Sbjct: 419 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 478
Query: 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
EA+ + + MK + PDS T++++I G + + + EM F
Sbjct: 479 RLLQEAYALLKKMK-EDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRF 531
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEA 283
S+ +N LL+ A + D + E M+ + +T++ +I C CR ++S A A
Sbjct: 9 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRL-GISHNLYTYNILIN-CFCRRSQISLALA 66
Query: 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ +M++ G+EP++ L+SL+ Y +R D V ++++ E+G PD
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 114
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 3/218 (1%)
Query: 116 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173
K RI+PN F+ LI + G +Y M + V P++ TY +L++ +
Sbjct: 251 KRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLD 310
Query: 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233
+ + ++ M NG PN Y +L+ + +++ ED + ++ EM +KG+ + Y L+
Sbjct: 311 EARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 370
Query: 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293
VG D A E+F M SS PD T++ ++ C GKV +A +F M +
Sbjct: 371 QGYCLVGRPDVAQEVFNQM-SSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREM 429
Query: 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331
+ N+ T +IQ K + +D L G+ P+
Sbjct: 430 DINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPN 467
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 108/217 (49%), Gaps = 1/217 (0%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
F+ L+ + +D ++++E+M+ +G+ P + T N ++ + + +P + +M
Sbjct: 86 FTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMM 145
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
G P+ T+ SLL Y ED ++++ ++ G + +V Y TL+ + +
Sbjct: 146 KLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLN 205
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303
A E+F M ++ + +P+ T+++++T G+ +A + +M++ EPN+ T+L
Sbjct: 206 HAVELFNQMGTNGS-RPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTAL 264
Query: 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340
I + K + + N + ++ + PD G L+N
Sbjct: 265 IDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLIN 301
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 132/298 (44%), Gaps = 3/298 (1%)
Query: 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161
+E A L+D+ ++ + ++TLI+ + + + ++ +M G +PN++TYN
Sbjct: 169 IEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNA 228
Query: 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221
L+ + R + ++M + PN T+ +L+ A+ + + +Y M +
Sbjct: 229 LVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMS 288
Query: 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281
+ V Y +L+ G DEA ++F M+ + C P+ ++++I +V +
Sbjct: 289 VYPDVFTYGSLINGLCMYGLLDEARQMFYLMERN-GCYPNEVIYTTLIHGFCKSKRVEDG 347
Query: 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341
+F EM + G N T LIQ Y R D N++ PD R LL+
Sbjct: 348 MKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDG 407
Query: 342 MTQTPKEELGKLV-ECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK 397
+ K E ++ E + K + V ++ + + ++A +LF S+ SK +K
Sbjct: 408 LCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMK 465
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183
++ LI+ Y G D V+ +M + P++ TYN LLD
Sbjct: 366 YTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLD------------------- 406
Query: 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 243
GL N E L ++ M+++ M +++ Y ++ +G +
Sbjct: 407 --GLCCNGKV--------------EKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE 450
Query: 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296
+AF++F + S+ +P+ T+++MI+ RG + EA+++F +M E GF PN
Sbjct: 451 DAFDLFCSL-FSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 49/95 (51%)
Query: 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159
G VE A +++ R + I+ ++ +I+ G + +++ + + G+KPN+ITY
Sbjct: 412 GKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITY 471
Query: 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194
++ R + +++K+M ++G PN + Y
Sbjct: 472 TTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/123 (18%), Positives = 58/123 (47%)
Query: 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158
G ++A ++++ + + D ++ L+ G + L ++E M+ + N++T
Sbjct: 376 VGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVT 435
Query: 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218
Y ++ M + + ++ + G+ PN TY +++ + R + S++++MK
Sbjct: 436 YTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMK 495
Query: 219 EKG 221
E G
Sbjct: 496 EDG 498
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,426,514
Number of Sequences: 539616
Number of extensions: 8376587
Number of successful extensions: 29064
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 22510
Number of HSP's gapped (non-prelim): 2947
length of query: 546
length of database: 191,569,459
effective HSP length: 122
effective length of query: 424
effective length of database: 125,736,307
effective search space: 53312194168
effective search space used: 53312194168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)