Query 009025
Match_columns 546
No_of_seqs 701 out of 3059
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 19:29:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.4E-60 3.1E-65 515.9 53.6 437 93-534 444-1023(1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.6E-52 1.7E-56 448.2 45.9 365 89-460 373-777 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 9.6E-51 2.1E-55 436.6 39.4 335 91-436 92-429 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 5.5E-48 1.2E-52 424.9 36.6 410 92-525 228-776 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-46 2.4E-51 405.2 41.6 401 97-525 169-613 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.8E-47 4E-52 420.8 33.7 354 91-461 192-613 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 1E-19 2.2E-24 203.7 42.6 320 96-426 509-831 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.5E-19 3.2E-24 202.4 42.3 336 82-428 462-800 (899)
9 PRK11788 tetratricopeptide rep 99.9 8E-20 1.7E-24 184.4 35.2 300 128-433 42-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 8.7E-19 1.9E-23 176.8 34.9 291 96-393 45-345 (389)
11 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.3E-21 170.1 39.7 323 95-427 51-381 (656)
12 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-15 2.6E-20 162.4 43.4 357 94-465 135-570 (615)
13 KOG4626 O-linked N-acetylgluco 99.8 2E-17 4.4E-22 160.6 24.6 329 120-465 115-450 (966)
14 PRK15174 Vi polysaccharide exp 99.8 1.2E-15 2.7E-20 162.0 39.6 303 80-393 71-379 (656)
15 KOG4626 O-linked N-acetylgluco 99.8 1.7E-16 3.7E-21 154.3 29.8 326 94-433 124-489 (966)
16 PRK11447 cellulose synthase su 99.8 6.1E-15 1.3E-19 167.3 41.6 327 95-428 278-701 (1157)
17 TIGR00990 3a0801s09 mitochondr 99.8 1.5E-14 3.3E-19 154.0 42.0 329 92-428 166-572 (615)
18 PRK11447 cellulose synthase su 99.7 2.4E-14 5.1E-19 162.6 41.1 347 80-434 298-748 (1157)
19 PRK10049 pgaA outer membrane p 99.7 6.4E-13 1.4E-17 144.4 41.0 327 98-433 27-426 (765)
20 PRK10049 pgaA outer membrane p 99.7 8.9E-13 1.9E-17 143.3 41.9 334 92-433 55-460 (765)
21 PRK14574 hmsH outer membrane p 99.7 7E-13 1.5E-17 141.7 40.0 342 81-433 30-483 (822)
22 KOG4422 Uncharacterized conser 99.6 5.5E-12 1.2E-16 118.3 30.9 305 120-428 206-552 (625)
23 PRK14574 hmsH outer membrane p 99.6 2E-11 4.4E-16 130.6 39.5 332 94-433 110-517 (822)
24 PRK09782 bacteriophage N4 rece 99.6 3.5E-11 7.6E-16 131.4 41.6 323 98-433 354-710 (987)
25 TIGR00540 hemY_coli hemY prote 99.6 8.2E-12 1.8E-16 126.0 34.2 295 124-426 85-398 (409)
26 KOG4422 Uncharacterized conser 99.6 2.1E-11 4.6E-16 114.4 32.7 331 93-428 214-591 (625)
27 PRK09782 bacteriophage N4 rece 99.6 2.8E-11 6E-16 132.2 38.6 319 98-428 388-741 (987)
28 PF13429 TPR_15: Tetratricopep 99.6 2.8E-14 6E-19 136.7 12.4 62 229-290 113-174 (280)
29 PRK10747 putative protoheme IX 99.5 5E-11 1.1E-15 119.6 34.3 283 134-427 97-390 (398)
30 PF13429 TPR_15: Tetratricopep 99.5 8.1E-14 1.8E-18 133.5 12.7 260 91-358 13-275 (280)
31 PRK10747 putative protoheme IX 99.5 6.2E-11 1.3E-15 119.0 31.2 280 98-392 96-387 (398)
32 KOG1126 DNA-binding cell divis 99.5 1.5E-11 3.3E-16 121.9 25.2 281 136-431 334-624 (638)
33 COG2956 Predicted N-acetylgluc 99.5 1.7E-10 3.8E-15 104.8 29.6 286 136-429 50-349 (389)
34 COG3071 HemY Uncharacterized e 99.5 6.9E-10 1.5E-14 104.0 33.2 301 126-434 87-397 (400)
35 KOG1126 DNA-binding cell divis 99.5 1.4E-11 3E-16 122.2 22.4 279 101-391 334-616 (638)
36 COG2956 Predicted N-acetylgluc 99.5 3.4E-10 7.4E-15 102.9 29.2 276 91-376 41-327 (389)
37 KOG2076 RNA polymerase III tra 99.4 6.4E-10 1.4E-14 114.0 34.2 323 98-425 151-510 (895)
38 KOG2003 TPR repeat-containing 99.4 1.7E-10 3.7E-15 109.0 27.9 185 238-427 502-689 (840)
39 TIGR00540 hemY_coli hemY prote 99.4 1.9E-10 4.1E-15 116.1 30.0 288 95-392 93-396 (409)
40 KOG1155 Anaphase-promoting com 99.4 6.8E-10 1.5E-14 105.6 29.7 223 129-356 235-491 (559)
41 KOG2002 TPR-containing nuclear 99.4 1.1E-09 2.3E-14 113.2 31.0 329 95-429 316-711 (1018)
42 KOG1129 TPR repeat-containing 99.4 3.4E-10 7.4E-15 102.9 24.0 237 157-434 224-463 (478)
43 TIGR02521 type_IV_pilW type IV 99.4 6.5E-10 1.4E-14 103.1 27.3 200 121-325 31-231 (234)
44 KOG0547 Translocase of outer m 99.4 4.1E-09 8.8E-14 101.0 31.3 320 95-425 124-564 (606)
45 KOG1155 Anaphase-promoting com 99.4 2.1E-09 4.5E-14 102.4 29.1 301 116-426 159-494 (559)
46 KOG0495 HAT repeat protein [RN 99.3 1.7E-08 3.7E-13 100.1 34.9 327 96-432 416-751 (913)
47 PRK12370 invasion protein regu 99.3 1.1E-09 2.3E-14 115.0 29.0 232 119-359 254-501 (553)
48 PRK12370 invasion protein regu 99.3 1.1E-09 2.3E-14 115.0 28.4 262 154-428 254-536 (553)
49 TIGR02521 type_IV_pilW type IV 99.3 1.8E-09 3.9E-14 100.1 27.1 201 155-359 30-231 (234)
50 PF13041 PPR_2: PPR repeat fam 99.3 9.1E-12 2E-16 84.4 6.7 49 119-167 1-49 (50)
51 KOG0495 HAT repeat protein [RN 99.3 8.6E-08 1.9E-12 95.2 35.5 322 98-428 452-783 (913)
52 KOG2002 TPR-containing nuclear 99.3 5E-08 1.1E-12 101.2 35.1 80 383-468 629-711 (1018)
53 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.7E-16 83.0 6.8 49 154-202 1-49 (50)
54 COG3071 HemY Uncharacterized e 99.3 8.2E-08 1.8E-12 90.4 32.8 282 98-391 96-386 (400)
55 KOG2076 RNA polymerase III tra 99.2 6.3E-08 1.4E-12 99.7 34.5 328 94-425 181-553 (895)
56 KOG1174 Anaphase-promoting com 99.2 3.3E-08 7.2E-13 93.0 28.6 298 125-432 198-503 (564)
57 KOG2003 TPR repeat-containing 99.2 1.8E-08 3.9E-13 95.6 25.1 288 93-390 426-717 (840)
58 KOG1915 Cell cycle control pro 99.2 3.9E-07 8.6E-12 87.3 32.5 196 227-428 323-537 (677)
59 KOG4318 Bicoid mRNA stability 99.1 1.5E-09 3.2E-14 110.8 16.4 220 108-346 12-285 (1088)
60 KOG1129 TPR repeat-containing 99.1 7.8E-09 1.7E-13 94.2 19.3 235 125-366 227-464 (478)
61 KOG1840 Kinesin light chain [C 99.1 5.6E-08 1.2E-12 97.8 27.4 234 191-425 199-477 (508)
62 PRK11189 lipoprotein NlpI; Pro 99.1 2.9E-07 6.3E-12 88.6 28.5 218 100-327 40-266 (296)
63 KOG1840 Kinesin light chain [C 99.1 5E-08 1.1E-12 98.1 23.4 236 123-358 201-477 (508)
64 COG3063 PilF Tfp pilus assembl 99.0 3.1E-07 6.7E-12 80.3 24.4 201 158-362 37-238 (250)
65 PF12569 NARP1: NMDA receptor- 99.0 6.7E-07 1.4E-11 91.1 30.4 286 94-392 12-331 (517)
66 KOG1173 Anaphase-promoting com 99.0 7E-07 1.5E-11 87.7 26.7 268 151-426 239-517 (611)
67 PRK11189 lipoprotein NlpI; Pro 99.0 4.5E-07 9.8E-12 87.2 25.6 221 170-428 40-266 (296)
68 PF12569 NARP1: NMDA receptor- 99.0 2.3E-06 5.1E-11 87.2 31.8 286 128-425 11-332 (517)
69 KOG0547 Translocase of outer m 98.9 3.1E-07 6.8E-12 88.4 22.3 219 167-392 337-563 (606)
70 COG3063 PilF Tfp pilus assembl 98.9 1.6E-06 3.4E-11 76.0 24.6 186 98-288 47-233 (250)
71 KOG2047 mRNA splicing factor [ 98.9 7.6E-06 1.7E-10 81.6 32.3 332 94-433 110-584 (835)
72 cd05804 StaR_like StaR_like; a 98.9 6.6E-06 1.4E-10 81.9 33.3 27 402-428 311-337 (355)
73 KOG4318 Bicoid mRNA stability 98.9 8.2E-08 1.8E-12 98.5 18.2 257 142-436 11-274 (1088)
74 PF04733 Coatomer_E: Coatomer 98.9 7.8E-08 1.7E-12 91.2 16.7 253 98-367 13-272 (290)
75 cd05804 StaR_like StaR_like; a 98.9 1.1E-05 2.3E-10 80.4 32.7 303 82-391 3-332 (355)
76 KOG1173 Anaphase-promoting com 98.9 3E-06 6.4E-11 83.4 27.0 322 96-428 151-485 (611)
77 KOG1915 Cell cycle control pro 98.9 3.4E-05 7.4E-10 74.4 32.8 148 98-252 85-233 (677)
78 KOG1174 Anaphase-promoting com 98.8 7.7E-06 1.7E-10 77.5 27.5 300 81-391 191-496 (564)
79 KOG1070 rRNA processing protei 98.8 3.2E-06 7E-11 91.0 26.6 236 109-352 1447-1691(1710)
80 KOG3785 Uncharacterized conser 98.8 6.7E-06 1.4E-10 76.3 24.3 91 338-429 399-492 (557)
81 KOG1156 N-terminal acetyltrans 98.7 6.8E-05 1.5E-09 75.2 32.2 205 89-302 45-257 (700)
82 KOG1125 TPR repeat-containing 98.7 1.6E-06 3.4E-11 85.6 20.1 230 87-324 286-525 (579)
83 PLN02789 farnesyltranstransfer 98.7 3.3E-05 7.1E-10 74.4 27.0 183 121-309 37-229 (320)
84 PRK04841 transcriptional regul 98.7 3.8E-05 8.2E-10 86.6 32.1 301 127-428 415-761 (903)
85 KOG4162 Predicted calmodulin-b 98.7 0.0002 4.3E-09 73.5 32.9 341 115-465 317-782 (799)
86 PLN02789 farnesyltranstransfer 98.7 4.6E-05 1E-09 73.4 27.5 207 96-309 47-267 (320)
87 PF12854 PPR_1: PPR repeat 98.6 4.3E-08 9.4E-13 59.6 4.3 32 292-323 2-33 (34)
88 PF12854 PPR_1: PPR repeat 98.6 4.4E-08 9.6E-13 59.6 4.3 32 221-252 2-33 (34)
89 KOG1070 rRNA processing protei 98.6 1.4E-05 3E-10 86.4 25.1 204 225-432 1457-1668(1710)
90 PF04733 Coatomer_E: Coatomer 98.6 3.3E-06 7.2E-11 80.2 17.4 250 129-394 9-264 (290)
91 KOG4340 Uncharacterized conser 98.6 5.8E-05 1.3E-09 68.6 23.5 314 97-423 21-371 (459)
92 KOG2047 mRNA splicing factor [ 98.6 0.00054 1.2E-08 68.9 32.3 169 193-362 389-581 (835)
93 KOG1128 Uncharacterized conser 98.5 7.9E-06 1.7E-10 82.8 18.7 213 91-325 403-615 (777)
94 TIGR03302 OM_YfiO outer membra 98.5 2.4E-05 5.1E-10 72.8 21.1 184 120-325 32-231 (235)
95 KOG1125 TPR repeat-containing 98.5 8E-06 1.7E-10 80.8 17.6 214 202-424 296-524 (579)
96 KOG2376 Signal recognition par 98.5 0.00024 5.1E-09 70.7 27.6 57 89-146 15-71 (652)
97 PRK04841 transcriptional regul 98.5 0.00018 3.9E-09 81.1 31.1 330 95-427 350-720 (903)
98 PRK15179 Vi polysaccharide bio 98.5 0.00034 7.4E-09 74.4 30.6 216 225-467 85-310 (694)
99 COG5010 TadD Flp pilus assembl 98.5 1.4E-05 3E-10 71.7 16.9 165 120-290 66-230 (257)
100 TIGR03302 OM_YfiO outer membra 98.5 3.4E-05 7.3E-10 71.8 20.7 187 154-362 31-234 (235)
101 KOG0548 Molecular co-chaperone 98.5 0.00032 6.9E-09 69.2 27.4 323 97-428 13-456 (539)
102 KOG3617 WD40 and TPR repeat-co 98.4 0.00015 3.2E-09 74.6 24.2 289 91-421 733-1058(1416)
103 KOG3081 Vesicle coat complex C 98.4 0.00053 1.2E-08 61.7 24.7 252 98-367 20-278 (299)
104 PRK10370 formate-dependent nit 98.4 8.3E-05 1.8E-09 66.7 20.3 117 205-325 53-172 (198)
105 KOG0624 dsRNA-activated protei 98.4 0.0018 4E-08 60.3 28.7 297 120-428 37-371 (504)
106 KOG1128 Uncharacterized conser 98.4 2.6E-05 5.7E-10 79.2 18.3 216 123-360 400-616 (777)
107 PRK15179 Vi polysaccharide bio 98.4 0.00024 5.2E-09 75.6 26.1 183 131-325 59-244 (694)
108 PRK15359 type III secretion sy 98.3 3.4E-05 7.3E-10 65.4 15.8 92 231-325 29-120 (144)
109 COG5010 TadD Flp pilus assembl 98.3 0.00011 2.4E-09 66.0 19.4 160 160-324 70-229 (257)
110 KOG4340 Uncharacterized conser 98.3 0.00028 6.1E-09 64.3 21.6 264 158-428 146-444 (459)
111 PRK15359 type III secretion sy 98.3 7.1E-05 1.5E-09 63.4 17.3 108 107-220 14-121 (144)
112 KOG4162 Predicted calmodulin-b 98.3 0.0028 6.1E-08 65.3 31.0 323 98-428 335-784 (799)
113 PRK10370 formate-dependent nit 98.3 4.7E-05 1E-09 68.3 16.6 120 134-256 52-174 (198)
114 KOG3060 Uncharacterized conser 98.3 0.00087 1.9E-08 60.0 23.6 189 170-364 26-224 (289)
115 COG4783 Putative Zn-dependent 98.3 4.4E-05 9.6E-10 74.3 16.8 110 98-211 318-428 (484)
116 KOG0624 dsRNA-activated protei 98.3 0.0027 5.8E-08 59.3 27.4 290 92-393 44-368 (504)
117 PRK14720 transcript cleavage f 98.3 0.00028 6.1E-09 75.9 24.0 214 120-343 30-268 (906)
118 COG4783 Putative Zn-dependent 98.3 0.00072 1.6E-08 66.2 24.4 137 166-325 316-453 (484)
119 KOG0985 Vesicle coat protein c 98.2 0.00079 1.7E-08 71.0 25.5 285 98-417 1060-1373(1666)
120 KOG1156 N-terminal acetyltrans 98.2 0.0099 2.2E-07 60.3 33.6 320 98-429 87-470 (700)
121 KOG2376 Signal recognition par 98.2 0.0083 1.8E-07 60.2 30.5 317 98-424 91-517 (652)
122 KOG1914 mRNA cleavage and poly 98.2 0.0091 2E-07 59.3 31.1 147 278-425 347-499 (656)
123 TIGR02552 LcrH_SycD type III s 98.2 0.0001 2.2E-09 61.9 14.7 94 229-325 20-113 (135)
124 KOG3081 Vesicle coat complex C 98.2 0.00025 5.5E-09 63.7 17.4 181 98-290 84-270 (299)
125 KOG0548 Molecular co-chaperone 98.1 0.004 8.7E-08 61.7 26.6 322 129-471 10-452 (539)
126 KOG3616 Selective LIM binding 98.1 0.00076 1.6E-08 68.7 22.0 190 98-322 718-907 (1636)
127 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.6E-09 72.1 16.3 126 191-324 169-295 (395)
128 KOG3616 Selective LIM binding 98.1 0.00022 4.9E-09 72.4 17.9 193 197-422 738-932 (1636)
129 KOG3785 Uncharacterized conser 98.1 0.00078 1.7E-08 63.0 19.8 212 103-326 271-490 (557)
130 TIGR00756 PPR pentatricopeptid 98.1 6.4E-06 1.4E-10 50.6 4.5 34 400-433 2-35 (35)
131 KOG3060 Uncharacterized conser 98.1 0.0057 1.2E-07 54.9 24.0 187 135-326 26-220 (289)
132 TIGR02552 LcrH_SycD type III s 98.1 0.00023 5.1E-09 59.6 15.2 97 192-291 18-114 (135)
133 PRK14720 transcript cleavage f 98.1 0.0018 3.8E-08 69.9 24.7 210 91-308 36-268 (906)
134 TIGR00756 PPR pentatricopeptid 98.0 8.2E-06 1.8E-10 50.1 4.2 33 299-331 2-34 (35)
135 KOG2053 Mitochondrial inherita 98.0 0.025 5.4E-07 59.6 31.1 224 97-327 20-256 (932)
136 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 49.3 4.3 33 399-431 2-34 (34)
137 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 49.4 4.0 33 122-154 2-34 (34)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00032 6.8E-09 69.1 16.0 126 158-290 171-296 (395)
139 KOG1127 TPR repeat-containing 97.9 0.027 5.9E-07 60.0 28.8 162 123-289 494-657 (1238)
140 PF08579 RPM2: Mitochondrial r 97.9 0.00022 4.9E-09 55.4 10.5 77 126-202 30-115 (120)
141 PF09976 TPR_21: Tetratricopep 97.9 0.00096 2.1E-08 56.7 15.6 85 199-286 56-142 (145)
142 PF09976 TPR_21: Tetratricopep 97.9 0.00091 2E-08 56.8 15.2 125 124-252 15-144 (145)
143 KOG3617 WD40 and TPR repeat-co 97.9 0.002 4.3E-08 66.7 19.7 238 120-392 725-993 (1416)
144 PF06239 ECSIT: Evolutionarily 97.8 0.00037 8E-09 61.2 12.5 98 106-205 34-152 (228)
145 KOG0985 Vesicle coat protein c 97.8 0.012 2.5E-07 62.6 25.1 223 98-348 1087-1329(1666)
146 PF10037 MRP-S27: Mitochondria 97.8 0.00031 6.8E-09 69.5 12.6 124 186-310 61-186 (429)
147 PF06239 ECSIT: Evolutionarily 97.8 0.00076 1.6E-08 59.3 13.0 95 259-353 44-161 (228)
148 PF01535 PPR: PPR repeat; Int 97.8 3.5E-05 7.6E-10 45.8 3.5 31 399-429 1-31 (31)
149 KOG2053 Mitochondrial inherita 97.8 0.085 1.8E-06 55.8 32.3 208 81-293 39-257 (932)
150 PF10037 MRP-S27: Mitochondria 97.7 0.00045 9.7E-09 68.4 12.7 123 117-239 62-186 (429)
151 PF08579 RPM2: Mitochondrial r 97.7 0.00059 1.3E-08 53.1 10.3 80 159-238 28-116 (120)
152 cd00189 TPR Tetratricopeptide 97.7 0.00086 1.9E-08 51.4 11.6 21 232-252 40-60 (100)
153 PF01535 PPR: PPR repeat; Int 97.7 4E-05 8.8E-10 45.5 3.0 29 299-327 2-30 (31)
154 cd00189 TPR Tetratricopeptide 97.7 0.00088 1.9E-08 51.3 11.6 94 229-325 3-96 (100)
155 KOG1127 TPR repeat-containing 97.6 0.011 2.3E-07 62.9 20.7 181 172-359 474-658 (1238)
156 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0027 5.8E-08 51.6 13.8 11 240-250 90-100 (119)
157 KOG1914 mRNA cleavage and poly 97.6 0.019 4.1E-07 57.1 20.9 186 137-325 309-500 (656)
158 PLN03088 SGT1, suppressor of 97.5 0.0023 5E-08 63.2 14.8 90 199-291 10-99 (356)
159 PRK02603 photosystem I assembl 97.5 0.0056 1.2E-07 53.7 15.8 84 193-278 37-122 (172)
160 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0043 9.3E-08 50.3 14.1 97 123-221 4-106 (119)
161 PF05843 Suf: Suppressor of fo 97.5 0.0044 9.5E-08 59.0 15.3 129 158-290 3-135 (280)
162 CHL00033 ycf3 photosystem I as 97.5 0.004 8.6E-08 54.4 13.9 94 191-286 35-137 (168)
163 PLN03088 SGT1, suppressor of 97.5 0.003 6.6E-08 62.4 14.4 92 163-256 9-100 (356)
164 PF14938 SNAP: Soluble NSF att 97.4 0.005 1.1E-07 58.8 15.3 86 240-325 129-224 (282)
165 PF12895 Apc3: Anaphase-promot 97.4 0.00037 8.1E-09 52.8 6.0 20 232-251 31-50 (84)
166 KOG1130 Predicted G-alpha GTPa 97.4 0.0016 3.4E-08 62.2 11.0 93 263-355 196-299 (639)
167 PF12895 Apc3: Anaphase-promot 97.4 0.00039 8.5E-09 52.7 5.6 81 99-181 2-83 (84)
168 PRK02603 photosystem I assembl 97.4 0.0096 2.1E-07 52.2 15.2 93 120-213 34-128 (172)
169 PF05843 Suf: Suppressor of fo 97.4 0.004 8.7E-08 59.3 13.6 128 193-325 3-135 (280)
170 PRK10153 DNA-binding transcrip 97.4 0.016 3.5E-07 59.9 18.8 147 186-337 332-491 (517)
171 PRK15363 pathogenicity island 97.4 0.0068 1.5E-07 51.0 13.0 89 199-290 43-131 (157)
172 PRK15363 pathogenicity island 97.3 0.0067 1.5E-07 51.0 12.7 97 226-325 35-131 (157)
173 CHL00033 ycf3 photosystem I as 97.3 0.0086 1.9E-07 52.3 14.1 113 102-215 15-137 (168)
174 PRK10866 outer membrane biogen 97.3 0.11 2.4E-06 48.3 21.7 53 97-150 43-98 (243)
175 PF14938 SNAP: Soluble NSF att 97.3 0.015 3.2E-07 55.6 16.5 145 232-393 100-264 (282)
176 PF12688 TPR_5: Tetratrico pep 97.3 0.019 4E-07 46.5 14.3 55 200-254 10-66 (120)
177 smart00463 SMR Small MutS-rela 97.3 0.002 4.3E-08 48.2 8.1 76 441-522 2-78 (80)
178 PRK10866 outer membrane biogen 97.2 0.059 1.3E-06 50.0 19.3 54 268-321 181-236 (243)
179 PRK10153 DNA-binding transcrip 97.2 0.033 7.2E-07 57.7 19.3 64 225-291 419-482 (517)
180 KOG2796 Uncharacterized conser 97.1 0.12 2.5E-06 47.0 18.4 142 193-338 179-325 (366)
181 KOG0553 TPR repeat-containing 97.0 0.0084 1.8E-07 55.3 11.0 85 203-290 93-177 (304)
182 COG4700 Uncharacterized protei 97.0 0.19 4.2E-06 43.2 18.7 138 223-363 86-229 (251)
183 PF13525 YfiO: Outer membrane 97.0 0.082 1.8E-06 47.7 17.4 54 97-150 16-71 (203)
184 PF14559 TPR_19: Tetratricopep 97.0 0.0026 5.7E-08 45.8 6.3 62 98-162 3-64 (68)
185 KOG2796 Uncharacterized conser 97.0 0.05 1.1E-06 49.2 15.2 140 158-301 179-323 (366)
186 COG4700 Uncharacterized protei 97.0 0.2 4.3E-06 43.1 18.7 102 189-290 87-188 (251)
187 PF12688 TPR_5: Tetratrico pep 96.9 0.068 1.5E-06 43.2 14.5 54 131-184 11-66 (120)
188 KOG2041 WD40 repeat protein [G 96.9 0.13 2.9E-06 52.8 19.3 86 225-324 851-950 (1189)
189 KOG0553 TPR repeat-containing 96.9 0.012 2.6E-07 54.3 11.1 99 236-340 91-190 (304)
190 PF13525 YfiO: Outer membrane 96.9 0.097 2.1E-06 47.2 16.9 62 124-185 8-71 (203)
191 PF14559 TPR_19: Tetratricopep 96.8 0.0059 1.3E-07 43.9 7.2 50 204-254 4-53 (68)
192 COG4235 Cytochrome c biogenesi 96.8 0.093 2E-06 48.9 16.3 117 102-221 138-257 (287)
193 PF13432 TPR_16: Tetratricopep 96.8 0.0071 1.5E-07 43.0 7.3 52 236-289 7-58 (65)
194 PF13414 TPR_11: TPR repeat; P 96.8 0.0067 1.5E-07 43.8 7.2 61 227-289 4-65 (69)
195 PF13432 TPR_16: Tetratricopep 96.7 0.0057 1.2E-07 43.5 6.3 57 268-325 3-59 (65)
196 COG3898 Uncharacterized membra 96.6 0.7 1.5E-05 44.6 31.4 297 124-432 85-397 (531)
197 KOG1538 Uncharacterized conser 96.6 0.087 1.9E-06 53.6 15.5 217 120-359 597-845 (1081)
198 COG4235 Cytochrome c biogenesi 96.6 0.12 2.6E-06 48.1 15.3 99 225-326 155-256 (287)
199 KOG0550 Molecular chaperone (D 96.6 0.37 8E-06 46.8 18.7 220 96-324 59-314 (486)
200 KOG1130 Predicted G-alpha GTPa 96.6 0.019 4.2E-07 55.1 10.1 268 91-359 22-343 (639)
201 PF04840 Vps16_C: Vps16, C-ter 96.5 0.64 1.4E-05 44.9 20.6 101 198-319 184-284 (319)
202 PF13414 TPR_11: TPR repeat; P 96.5 0.013 2.9E-07 42.2 7.2 64 120-184 2-66 (69)
203 PRK10803 tol-pal system protei 96.4 0.11 2.3E-06 48.8 14.2 89 273-363 154-249 (263)
204 PF13281 DUF4071: Domain of un 96.3 0.94 2E-05 44.4 20.3 76 126-201 146-227 (374)
205 KOG3941 Intermediate in Toll s 96.3 0.032 6.9E-07 51.0 9.5 105 118-241 64-173 (406)
206 PRK10803 tol-pal system protei 96.3 0.078 1.7E-06 49.7 12.7 18 236-253 227-244 (263)
207 PF12921 ATP13: Mitochondrial 96.3 0.11 2.3E-06 42.5 11.6 52 222-273 48-99 (126)
208 PF12921 ATP13: Mitochondrial 96.2 0.067 1.4E-06 43.8 10.3 53 186-238 47-100 (126)
209 PF03704 BTAD: Bacterial trans 96.2 0.038 8.2E-07 46.8 9.2 70 228-299 64-138 (146)
210 KOG2041 WD40 repeat protein [G 96.1 0.8 1.7E-05 47.4 19.1 177 153-354 689-875 (1189)
211 KOG3941 Intermediate in Toll s 96.1 0.084 1.8E-06 48.3 11.1 82 278-359 88-187 (406)
212 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.6 3.5E-05 43.0 28.8 125 300-425 400-529 (660)
213 PF03704 BTAD: Bacterial trans 96.0 0.078 1.7E-06 44.9 10.2 70 158-228 64-138 (146)
214 PF13424 TPR_12: Tetratricopep 95.9 0.03 6.5E-07 41.5 6.4 23 229-251 8-30 (78)
215 PF13371 TPR_9: Tetratricopept 95.9 0.038 8.2E-07 40.3 6.7 54 200-254 4-57 (73)
216 COG0457 NrfG FOG: TPR repeat [ 95.8 1.4 3E-05 39.7 27.3 90 272-363 177-268 (291)
217 PF13371 TPR_9: Tetratricopept 95.8 0.047 1E-06 39.7 7.0 54 235-290 4-57 (73)
218 PF13424 TPR_12: Tetratricopep 95.7 0.039 8.5E-07 40.8 6.3 62 192-253 6-73 (78)
219 COG3898 Uncharacterized membra 95.7 2.2 4.8E-05 41.3 28.6 288 98-401 96-398 (531)
220 PRK15331 chaperone protein Sic 95.6 0.87 1.9E-05 38.7 14.5 90 233-325 44-133 (165)
221 smart00299 CLH Clathrin heavy 95.6 1.1 2.4E-05 37.5 15.5 20 232-251 75-94 (140)
222 PRK15331 chaperone protein Sic 95.5 0.48 1E-05 40.3 12.7 87 201-290 47-133 (165)
223 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.36 7.8E-06 48.0 13.7 67 81-150 71-141 (453)
224 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.8 6.1E-05 41.4 19.3 145 192-343 398-546 (660)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.37 8E-06 47.9 13.6 66 118-185 72-141 (453)
226 PF13281 DUF4071: Domain of un 95.2 3.5 7.6E-05 40.5 21.1 95 160-254 145-254 (374)
227 PF07035 Mic1: Colon cancer-as 95.2 1.8 4E-05 37.1 15.7 135 141-290 14-148 (167)
228 smart00299 CLH Clathrin heavy 95.2 1.6 3.5E-05 36.4 15.3 85 125-217 11-95 (140)
229 COG4105 ComL DNA uptake lipopr 95.1 2.6 5.6E-05 38.6 19.4 52 133-184 46-99 (254)
230 KOG2610 Uncharacterized conser 95.1 0.65 1.4E-05 43.8 13.0 154 168-324 115-274 (491)
231 COG3118 Thioredoxin domain-con 95.0 3.1 6.7E-05 38.9 17.9 122 165-290 143-264 (304)
232 PF04053 Coatomer_WDAD: Coatom 95.0 0.75 1.6E-05 46.7 14.6 108 122-256 296-403 (443)
233 PF01713 Smr: Smr domain; Int 94.8 0.14 3.1E-06 38.4 7.0 72 443-522 1-81 (83)
234 PF10300 DUF3808: Protein of u 94.8 1.7 3.6E-05 44.8 16.8 130 194-326 191-334 (468)
235 KOG0543 FKBP-type peptidyl-pro 94.8 0.45 9.7E-06 46.2 11.6 78 263-343 258-335 (397)
236 PF04184 ST7: ST7 protein; In 94.8 2.7 6E-05 42.2 17.1 159 132-304 179-338 (539)
237 PF07079 DUF1347: Protein of u 94.7 4.9 0.00011 39.9 26.7 30 399-428 299-328 (549)
238 COG3118 Thioredoxin domain-con 94.7 3.7 8E-05 38.4 17.7 145 130-277 143-287 (304)
239 KOG0543 FKBP-type peptidyl-pro 94.7 0.48 1E-05 46.0 11.6 95 297-392 257-352 (397)
240 PF13170 DUF4003: Protein of u 94.6 1.6 3.4E-05 41.8 15.0 128 102-231 78-222 (297)
241 PRK11906 transcriptional regul 94.4 4.1 8.9E-05 40.8 17.6 158 192-355 252-431 (458)
242 PF04840 Vps16_C: Vps16, C-ter 94.4 5.3 0.00012 38.7 25.7 54 97-164 11-64 (319)
243 PF10300 DUF3808: Protein of u 94.4 2.5 5.5E-05 43.5 16.9 181 138-325 174-375 (468)
244 PF04053 Coatomer_WDAD: Coatom 94.3 1.5 3.3E-05 44.5 15.0 156 131-323 271-428 (443)
245 KOG1585 Protein required for f 94.3 4.1 8.9E-05 37.0 17.9 226 102-354 9-250 (308)
246 COG4105 ComL DNA uptake lipopr 94.1 4.7 0.0001 37.0 19.8 180 91-289 39-231 (254)
247 KOG1538 Uncharacterized conser 94.1 4.2 9.2E-05 42.0 17.0 199 108-326 622-846 (1081)
248 PRK11906 transcriptional regul 94.0 3.7 8E-05 41.1 16.2 161 227-392 252-433 (458)
249 COG0457 NrfG FOG: TPR repeat [ 93.9 4.5 9.8E-05 36.1 29.9 166 122-290 60-230 (291)
250 KOG1941 Acetylcholine receptor 93.7 6.8 0.00015 37.7 19.8 231 92-324 13-273 (518)
251 KOG2610 Uncharacterized conser 93.7 2 4.3E-05 40.8 12.9 114 238-355 115-233 (491)
252 COG1729 Uncharacterized protei 93.6 1.5 3.2E-05 40.5 12.1 98 193-291 144-244 (262)
253 KOG2114 Vacuolar assembly/sort 93.3 2.5 5.4E-05 45.0 14.3 176 126-323 339-516 (933)
254 KOG4555 TPR repeat-containing 93.3 3.2 6.9E-05 33.7 11.8 89 201-291 53-144 (175)
255 KOG4555 TPR repeat-containing 93.3 2.9 6.3E-05 33.9 11.5 91 234-327 51-145 (175)
256 PF04184 ST7: ST7 protein; In 93.2 7.6 0.00016 39.2 16.9 59 300-358 262-322 (539)
257 PF07079 DUF1347: Protein of u 93.2 10 0.00022 37.8 30.3 323 98-427 18-409 (549)
258 KOG2114 Vacuolar assembly/sort 93.2 7.6 0.00016 41.6 17.5 142 196-354 339-486 (933)
259 COG3629 DnrI DNA-binding trans 93.1 1.2 2.6E-05 41.7 10.9 62 227-290 154-215 (280)
260 KOG2280 Vacuolar assembly/sort 93.1 7.3 0.00016 41.2 17.1 85 263-357 685-770 (829)
261 COG4649 Uncharacterized protei 93.0 5.3 0.00011 34.2 13.6 124 96-219 68-195 (221)
262 PF13512 TPR_18: Tetratricopep 93.0 2.8 6.2E-05 34.8 11.6 73 236-308 20-93 (142)
263 PF13170 DUF4003: Protein of u 93.0 8.9 0.00019 36.7 20.3 128 173-302 79-222 (297)
264 COG3629 DnrI DNA-binding trans 92.9 1.3 2.9E-05 41.5 10.8 79 262-341 153-236 (280)
265 PF09205 DUF1955: Domain of un 92.7 4.7 0.0001 32.9 16.1 67 226-294 86-152 (161)
266 COG1729 Uncharacterized protei 92.6 2.2 4.8E-05 39.4 11.6 97 228-325 144-243 (262)
267 PF02259 FAT: FAT domain; Int 92.4 12 0.00025 36.8 20.1 66 260-325 144-212 (352)
268 PF04097 Nic96: Nup93/Nic96; 92.4 18 0.00039 38.8 20.8 56 94-150 119-181 (613)
269 PF13428 TPR_14: Tetratricopep 92.3 0.61 1.3E-05 29.9 5.6 25 230-254 5-29 (44)
270 KOG1941 Acetylcholine receptor 92.1 12 0.00026 36.1 17.1 97 228-324 85-189 (518)
271 KOG0550 Molecular chaperone (D 91.9 14 0.0003 36.4 18.6 231 154-394 166-422 (486)
272 PF13176 TPR_7: Tetratricopept 91.7 0.27 5.7E-06 30.0 3.2 27 400-426 1-27 (36)
273 PF13428 TPR_14: Tetratricopep 91.6 0.67 1.5E-05 29.7 5.3 28 123-150 3-30 (44)
274 PF08631 SPO22: Meiosis protei 91.5 13 0.00028 35.3 26.8 123 97-220 4-150 (278)
275 PF10602 RPN7: 26S proteasome 91.5 2.8 6.1E-05 36.7 10.7 63 122-184 37-101 (177)
276 PF09613 HrpB1_HrpK: Bacterial 91.2 5.9 0.00013 33.6 11.7 54 95-150 19-73 (160)
277 PF13512 TPR_18: Tetratricopep 91.1 3.9 8.4E-05 34.0 10.4 80 89-168 13-94 (142)
278 KOG1585 Protein required for f 90.9 12 0.00027 34.0 14.1 23 91-113 36-58 (308)
279 PRK09687 putative lyase; Provi 90.8 15 0.00033 34.8 28.8 221 119-362 35-265 (280)
280 COG1747 Uncharacterized N-term 90.8 21 0.00044 36.3 21.3 181 119-307 64-249 (711)
281 KOG1550 Extracellular protein 90.7 25 0.00054 37.2 26.8 180 101-293 227-428 (552)
282 KOG2280 Vacuolar assembly/sort 90.5 27 0.00059 37.2 24.2 26 398-423 744-769 (829)
283 PF13176 TPR_7: Tetratricopept 90.5 0.65 1.4E-05 28.2 4.1 26 123-148 1-26 (36)
284 PF10602 RPN7: 26S proteasome 89.7 4.8 0.0001 35.3 10.5 61 193-253 38-100 (177)
285 PF07035 Mic1: Colon cancer-as 89.7 12 0.00027 32.1 15.1 136 105-254 13-148 (167)
286 KOG1550 Extracellular protein 89.4 32 0.00068 36.4 24.1 183 137-328 228-428 (552)
287 PRK09687 putative lyase; Provi 89.4 20 0.00043 34.1 26.5 217 103-344 53-279 (280)
288 KOG4570 Uncharacterized conser 88.7 6.3 0.00014 37.2 10.7 42 313-354 116-158 (418)
289 KOG1920 IkappaB kinase complex 88.5 48 0.001 37.4 18.8 28 122-149 791-820 (1265)
290 PF00515 TPR_1: Tetratricopept 86.8 1.5 3.2E-05 26.0 3.9 30 399-428 2-31 (34)
291 KOG1586 Protein required for f 86.4 25 0.00055 31.9 14.6 21 273-293 165-185 (288)
292 KOG0276 Vesicle coat complex C 85.9 12 0.00026 38.7 11.6 100 202-323 648-747 (794)
293 PF09613 HrpB1_HrpK: Bacterial 85.8 21 0.00046 30.4 13.7 17 308-324 55-71 (160)
294 TIGR02561 HrpB1_HrpK type III 85.7 16 0.00035 30.6 10.5 51 98-150 22-73 (153)
295 PF13431 TPR_17: Tetratricopep 85.7 1.1 2.3E-05 26.9 2.9 22 120-141 12-33 (34)
296 PF07719 TPR_2: Tetratricopept 85.5 1.9 4.2E-05 25.3 4.0 29 400-428 3-31 (34)
297 PF08631 SPO22: Meiosis protei 85.4 34 0.00074 32.5 26.3 162 132-297 4-192 (278)
298 PF00515 TPR_1: Tetratricopept 84.9 2.6 5.5E-05 24.9 4.4 29 122-150 2-30 (34)
299 PF09205 DUF1955: Domain of un 84.9 20 0.00043 29.4 14.8 67 190-257 85-151 (161)
300 KOG4570 Uncharacterized conser 84.6 12 0.00025 35.5 10.1 98 190-290 63-163 (418)
301 PF13431 TPR_17: Tetratricopep 84.5 1.3 2.7E-05 26.6 2.8 21 261-281 12-32 (34)
302 PF04190 DUF410: Protein of un 84.4 36 0.00078 31.9 18.5 26 225-250 89-114 (260)
303 PF13374 TPR_10: Tetratricopep 83.7 2.9 6.3E-05 25.9 4.5 28 122-149 3-30 (42)
304 PF11207 DUF2989: Protein of u 83.4 12 0.00027 33.1 9.4 80 130-211 116-198 (203)
305 COG5159 RPN6 26S proteasome re 83.1 25 0.00054 32.9 11.5 54 267-320 8-68 (421)
306 cd00923 Cyt_c_Oxidase_Va Cytoc 83.1 11 0.00023 29.0 7.6 46 173-218 24-69 (103)
307 PF13374 TPR_10: Tetratricopep 82.9 2.5 5.4E-05 26.2 3.9 28 399-426 3-30 (42)
308 COG1747 Uncharacterized N-term 82.8 60 0.0013 33.2 25.2 181 153-342 63-249 (711)
309 KOG2066 Vacuolar assembly/sort 82.5 76 0.0016 34.2 24.6 150 91-254 361-533 (846)
310 PF07719 TPR_2: Tetratricopept 82.4 3.7 8E-05 24.1 4.4 28 123-150 3-30 (34)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 81.7 11 0.00023 28.9 7.2 46 209-254 25-70 (103)
312 KOG1920 IkappaB kinase complex 81.6 1E+02 0.0022 35.1 21.9 31 153-184 788-820 (1265)
313 PF02284 COX5A: Cytochrome c o 81.4 7.5 0.00016 30.1 6.4 44 175-218 29-72 (108)
314 PF00637 Clathrin: Region in C 80.7 0.66 1.4E-05 39.0 0.7 47 168-214 19-65 (143)
315 PF11207 DUF2989: Protein of u 80.1 17 0.00036 32.3 9.1 73 243-317 123-198 (203)
316 PF13929 mRNA_stabil: mRNA sta 79.7 56 0.0012 30.9 13.6 147 159-308 134-289 (292)
317 COG4785 NlpI Lipoprotein NlpI, 79.5 47 0.001 29.9 15.5 183 96-290 75-265 (297)
318 COG4785 NlpI Lipoprotein NlpI, 79.4 47 0.001 29.9 16.2 176 242-429 81-268 (297)
319 KOG0890 Protein kinase of the 79.2 1.7E+02 0.0037 36.1 26.4 145 98-250 1395-1542(2382)
320 PF00637 Clathrin: Region in C 78.1 0.79 1.7E-05 38.5 0.4 15 398-412 125-139 (143)
321 PF02284 COX5A: Cytochrome c o 77.9 30 0.00065 26.9 8.6 46 210-255 29-74 (108)
322 PF13181 TPR_8: Tetratricopept 77.9 5.4 0.00012 23.4 4.0 29 400-428 3-31 (34)
323 COG2976 Uncharacterized protei 77.3 47 0.001 29.3 10.8 125 122-256 55-189 (207)
324 KOG1464 COP9 signalosome, subu 77.0 63 0.0014 30.0 15.7 187 151-337 21-232 (440)
325 KOG0276 Vesicle coat complex C 77.0 28 0.0006 36.1 10.6 100 132-252 648-747 (794)
326 TIGR02561 HrpB1_HrpK type III 76.8 44 0.00095 28.1 12.3 17 274-290 56-72 (153)
327 COG4649 Uncharacterized protei 76.4 50 0.0011 28.6 16.1 139 155-295 58-200 (221)
328 KOG4648 Uncharacterized conser 75.2 15 0.00033 35.2 7.8 44 166-211 107-151 (536)
329 KOG2066 Vacuolar assembly/sort 74.0 1.4E+02 0.003 32.4 23.9 151 128-290 363-533 (846)
330 PF08424 NRDE-2: NRDE-2, neces 73.7 91 0.002 30.3 15.9 82 259-343 16-110 (321)
331 PF07721 TPR_4: Tetratricopept 72.9 5.9 0.00013 21.9 2.9 22 401-422 4-25 (26)
332 COG4455 ImpE Protein of avirul 72.8 27 0.00058 31.4 8.2 76 229-306 4-81 (273)
333 COG2976 Uncharacterized protei 72.7 68 0.0015 28.4 14.4 89 233-327 96-189 (207)
334 PF13174 TPR_6: Tetratricopept 72.3 6.8 0.00015 22.6 3.4 24 127-150 6-29 (33)
335 PF06552 TOM20_plant: Plant sp 71.4 69 0.0015 27.9 10.7 76 242-327 51-137 (186)
336 TIGR03504 FimV_Cterm FimV C-te 71.3 7.6 0.00017 24.9 3.5 26 403-428 4-29 (44)
337 PF13181 TPR_8: Tetratricopept 71.1 12 0.00027 21.7 4.4 27 123-149 3-29 (34)
338 KOG4234 TPR repeat-containing 71.0 37 0.0008 30.1 8.6 91 271-363 104-200 (271)
339 COG3947 Response regulator con 70.2 1E+02 0.0022 29.2 15.3 67 266-333 283-354 (361)
340 PRK15180 Vi polysaccharide bio 70.0 90 0.002 31.6 12.0 120 98-221 301-421 (831)
341 KOG4648 Uncharacterized conser 68.8 31 0.00067 33.2 8.3 49 201-251 107-156 (536)
342 KOG1586 Protein required for f 68.7 95 0.0021 28.4 17.0 27 304-330 161-187 (288)
343 KOG4234 TPR repeat-containing 68.7 75 0.0016 28.3 9.9 18 167-184 106-123 (271)
344 PF11663 Toxin_YhaV: Toxin wit 68.3 6.2 0.00013 32.2 3.2 46 73-130 92-137 (140)
345 PRK15180 Vi polysaccharide bio 67.7 56 0.0012 33.0 10.1 119 134-256 302-421 (831)
346 PF13929 mRNA_stabil: mRNA sta 67.5 1.1E+02 0.0025 28.9 17.9 63 259-321 199-262 (292)
347 COG4455 ImpE Protein of avirul 67.0 43 0.00093 30.2 8.3 51 164-215 9-59 (273)
348 PF14669 Asp_Glu_race_2: Putat 66.2 94 0.002 27.4 12.4 172 150-322 2-206 (233)
349 PF07163 Pex26: Pex26 protein; 65.9 80 0.0017 29.6 10.1 91 194-285 86-181 (309)
350 COG5159 RPN6 26S proteasome re 65.8 1.2E+02 0.0026 28.6 13.7 53 162-214 9-68 (421)
351 PF06552 TOM20_plant: Plant sp 65.6 93 0.002 27.2 11.3 109 102-221 7-137 (186)
352 smart00638 LPD_N Lipoprotein N 65.6 1.9E+02 0.0042 30.8 26.3 94 120-219 309-403 (574)
353 TIGR03504 FimV_Cterm FimV C-te 65.0 15 0.00033 23.6 3.9 19 165-183 8-26 (44)
354 PF14689 SPOB_a: Sensor_kinase 64.1 24 0.00051 24.6 5.2 47 101-149 5-51 (62)
355 PF10579 Rapsyn_N: Rapsyn N-te 62.0 29 0.00064 25.5 5.3 46 203-248 18-65 (80)
356 KOG2063 Vacuolar assembly/sort 62.0 2.7E+02 0.0058 31.2 15.4 116 193-309 506-638 (877)
357 PHA02875 ankyrin repeat protei 61.5 53 0.0011 33.2 9.5 210 96-332 9-230 (413)
358 PF11838 ERAP1_C: ERAP1-like C 61.4 1.6E+02 0.0034 28.4 12.8 82 102-186 146-231 (324)
359 KOG0890 Protein kinase of the 61.0 4.2E+02 0.009 33.1 21.4 150 126-286 1388-1542(2382)
360 PF08424 NRDE-2: NRDE-2, neces 60.2 1.7E+02 0.0037 28.4 17.7 97 119-217 17-128 (321)
361 KOG2034 Vacuolar sorting prote 59.9 2.8E+02 0.006 30.7 24.1 50 128-183 365-416 (911)
362 TIGR02508 type_III_yscG type I 59.4 82 0.0018 24.5 8.9 51 200-256 48-98 (115)
363 KOG1464 COP9 signalosome, subu 59.1 1.6E+02 0.0034 27.6 27.2 250 98-354 39-326 (440)
364 KOG4077 Cytochrome c oxidase, 59.0 71 0.0015 26.0 7.4 45 175-219 68-112 (149)
365 PF02259 FAT: FAT domain; Int 58.9 1.8E+02 0.0039 28.3 21.9 188 97-290 9-212 (352)
366 KOG0686 COP9 signalosome, subu 58.7 2E+02 0.0043 28.7 14.6 30 311-340 318-352 (466)
367 PF10579 Rapsyn_N: Rapsyn N-te 58.4 34 0.00075 25.1 5.2 13 335-347 46-58 (80)
368 KOG2297 Predicted translation 58.3 1.7E+02 0.0038 27.9 13.6 62 107-174 151-214 (412)
369 PF14689 SPOB_a: Sensor_kinase 58.1 33 0.00073 23.9 5.1 23 231-253 28-50 (62)
370 KOG2034 Vacuolar sorting prote 57.5 3E+02 0.0066 30.4 25.2 45 98-148 370-416 (911)
371 PF11848 DUF3368: Domain of un 57.2 43 0.00094 21.9 5.2 31 274-304 14-44 (48)
372 PF04097 Nic96: Nup93/Nic96; 57.1 2.8E+02 0.006 29.9 18.2 43 126-169 116-158 (613)
373 smart00028 TPR Tetratricopepti 56.6 20 0.00043 19.5 3.4 28 400-427 3-30 (34)
374 TIGR02508 type_III_yscG type I 56.4 93 0.002 24.2 8.1 14 273-286 50-63 (115)
375 cd00280 TRFH Telomeric Repeat 56.3 80 0.0017 27.6 7.9 68 101-171 84-158 (200)
376 PF07163 Pex26: Pex26 protein; 56.3 1.8E+02 0.0039 27.4 14.5 15 128-142 90-104 (309)
377 COG2909 MalT ATP-dependent tra 56.0 3.2E+02 0.007 30.3 26.1 287 138-432 298-652 (894)
378 COG0790 FOG: TPR repeat, SEL1 55.5 1.9E+02 0.0041 27.4 22.5 84 98-187 53-144 (292)
379 KOG4077 Cytochrome c oxidase, 54.7 83 0.0018 25.6 7.2 47 209-255 67-113 (149)
380 KOG1258 mRNA processing protei 54.7 2.8E+02 0.006 29.1 19.1 186 118-311 294-489 (577)
381 COG0790 FOG: TPR repeat, SEL1 53.9 2E+02 0.0043 27.2 25.4 190 133-336 53-276 (292)
382 PF04762 IKI3: IKI3 family; I 53.6 3.9E+02 0.0084 30.5 15.8 31 81-111 689-719 (928)
383 cd08819 CARD_MDA5_2 Caspase ac 53.2 96 0.0021 23.4 7.0 32 205-241 50-81 (88)
384 PF13762 MNE1: Mitochondrial s 53.2 1.4E+02 0.003 25.1 11.2 82 123-204 41-128 (145)
385 PF11846 DUF3366: Domain of un 53.1 67 0.0014 28.4 7.6 33 188-220 141-173 (193)
386 COG3947 Response regulator con 53.0 2.1E+02 0.0045 27.2 15.8 70 228-299 281-355 (361)
387 PF11848 DUF3368: Domain of un 52.9 57 0.0012 21.3 5.2 11 176-186 22-32 (48)
388 PF10366 Vps39_1: Vacuolar sor 52.1 97 0.0021 24.5 7.4 27 299-325 41-67 (108)
389 PRK13342 recombination factor 51.2 2.8E+02 0.006 28.1 17.0 136 102-256 153-300 (413)
390 PF07575 Nucleopor_Nup85: Nup8 51.0 60 0.0013 34.5 8.0 92 194-290 375-466 (566)
391 cd00280 TRFH Telomeric Repeat 50.8 1.2E+02 0.0025 26.7 8.0 23 232-254 117-139 (200)
392 PF13762 MNE1: Mitochondrial s 50.1 1.5E+02 0.0033 24.8 10.4 82 158-239 41-128 (145)
393 COG2909 MalT ATP-dependent tra 49.2 4.1E+02 0.0089 29.5 26.2 51 204-254 471-525 (894)
394 PF08311 Mad3_BUB1_I: Mad3/BUB 49.2 1.4E+02 0.0031 24.2 8.6 43 244-286 81-123 (126)
395 PF11846 DUF3366: Domain of un 48.8 78 0.0017 28.0 7.3 32 259-290 141-172 (193)
396 PF11817 Foie-gras_1: Foie gra 48.7 92 0.002 28.9 8.0 22 126-147 183-204 (247)
397 PF10475 DUF2450: Protein of u 48.3 2.5E+02 0.0055 26.8 12.4 53 267-325 103-155 (291)
398 KOG4507 Uncharacterized conser 48.3 72 0.0016 33.2 7.4 148 154-305 569-718 (886)
399 PF12862 Apc5: Anaphase-promot 46.7 92 0.002 23.7 6.5 53 97-149 9-69 (94)
400 KOG4642 Chaperone-dependent E3 45.0 2.5E+02 0.0055 25.9 10.7 82 272-357 20-104 (284)
401 KOG2908 26S proteasome regulat 44.8 2.5E+02 0.0055 27.3 9.9 81 235-315 84-175 (380)
402 PF11663 Toxin_YhaV: Toxin wit 44.6 24 0.00052 28.9 2.9 30 204-235 108-137 (140)
403 PF04910 Tcf25: Transcriptiona 44.6 3.3E+02 0.0071 27.0 16.0 101 261-362 99-224 (360)
404 PF11838 ERAP1_C: ERAP1-like C 44.5 3E+02 0.0064 26.5 18.6 109 242-355 146-261 (324)
405 COG0735 Fur Fe2+/Zn2+ uptake r 44.2 1.4E+02 0.0031 25.0 7.7 25 162-186 26-50 (145)
406 PHA02875 ankyrin repeat protei 44.1 83 0.0018 31.7 7.6 176 131-332 9-196 (413)
407 COG5108 RPO41 Mitochondrial DN 43.9 1.6E+02 0.0034 31.4 9.0 45 94-138 36-82 (1117)
408 PF09477 Type_III_YscG: Bacter 43.8 1.6E+02 0.0035 23.2 8.2 19 238-256 81-99 (116)
409 PF12862 Apc5: Anaphase-promot 42.9 1.5E+02 0.0032 22.5 7.2 22 268-289 47-68 (94)
410 KOG0687 26S proteasome regulat 42.6 3.3E+02 0.0071 26.4 12.9 148 205-354 36-204 (393)
411 PRK10564 maltose regulon perip 42.0 52 0.0011 31.3 5.1 30 124-153 260-289 (303)
412 PF09670 Cas_Cas02710: CRISPR- 41.8 3.7E+02 0.0081 26.9 12.7 55 165-220 140-198 (379)
413 PF10345 Cohesin_load: Cohesin 41.3 4.8E+02 0.01 28.0 31.0 327 98-425 151-604 (608)
414 PRK10564 maltose regulon perip 41.1 49 0.0011 31.4 4.8 36 259-294 253-289 (303)
415 PF10366 Vps39_1: Vacuolar sor 40.5 1.7E+02 0.0037 23.1 7.2 26 265-290 42-67 (108)
416 cd08819 CARD_MDA5_2 Caspase ac 40.5 1.6E+02 0.0035 22.2 7.4 66 140-211 21-86 (88)
417 PRK10941 hypothetical protein; 40.3 3.2E+02 0.007 25.7 11.0 59 230-290 185-243 (269)
418 KOG4567 GTPase-activating prot 40.1 3.5E+02 0.0075 26.0 10.0 43 212-254 264-306 (370)
419 PF11817 Foie-gras_1: Foie gra 39.0 1.4E+02 0.0031 27.7 7.7 58 266-323 182-244 (247)
420 KOG0292 Vesicle coat complex C 39.0 2.1E+02 0.0046 31.6 9.4 158 231-428 625-783 (1202)
421 KOG4507 Uncharacterized conser 38.6 1.2E+02 0.0026 31.7 7.2 146 119-271 569-719 (886)
422 PF10475 DUF2450: Protein of u 38.3 2E+02 0.0044 27.4 8.8 114 126-250 103-221 (291)
423 PRK13342 recombination factor 38.1 4.4E+02 0.0096 26.7 18.8 32 275-306 243-274 (413)
424 COG5187 RPN7 26S proteasome re 37.4 3.7E+02 0.008 25.6 12.8 70 226-296 115-189 (412)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 37.0 2.3E+02 0.005 23.1 8.9 57 264-322 67-124 (126)
426 KOG4567 GTPase-activating prot 37.0 1.9E+02 0.004 27.7 7.7 72 176-252 263-344 (370)
427 KOG0292 Vesicle coat complex C 36.2 4.7E+02 0.01 29.1 11.3 129 98-256 655-783 (1202)
428 COG5108 RPO41 Mitochondrial DN 36.1 1.8E+02 0.0038 31.0 8.0 91 126-219 33-131 (1117)
429 TIGR02270 conserved hypothetic 35.0 5E+02 0.011 26.3 27.0 207 128-360 45-251 (410)
430 PRK08691 DNA polymerase III su 34.9 5.5E+02 0.012 28.1 11.8 33 220-254 194-226 (709)
431 COG0735 Fur Fe2+/Zn2+ uptake r 34.6 1.8E+02 0.0038 24.4 6.8 60 286-346 10-69 (145)
432 KOG2396 HAT (Half-A-TPR) repea 34.6 5.4E+02 0.012 26.6 22.2 95 259-356 456-555 (568)
433 PF01347 Vitellogenin_N: Lipop 34.5 6.1E+02 0.013 27.2 19.5 82 117-202 341-423 (618)
434 PF11123 DNA_Packaging_2: DNA 34.4 1.3E+02 0.0028 21.7 4.8 34 101-135 12-45 (82)
435 smart00386 HAT HAT (Half-A-TPR 33.9 88 0.0019 17.4 3.9 28 100-128 1-28 (33)
436 PF14853 Fis1_TPR_C: Fis1 C-te 33.8 1.5E+02 0.0032 19.9 5.3 30 127-158 7-36 (53)
437 PRK09857 putative transposase; 33.2 4.4E+02 0.0096 25.2 10.7 66 265-331 209-274 (292)
438 KOG4279 Serine/threonine prote 32.7 5.9E+02 0.013 27.9 11.2 205 103-340 180-407 (1226)
439 KOG2063 Vacuolar assembly/sort 32.1 7.8E+02 0.017 27.7 20.4 26 124-149 507-532 (877)
440 PF02847 MA3: MA3 domain; Int 32.0 1.8E+02 0.004 22.8 6.4 99 125-224 6-113 (113)
441 KOG2422 Uncharacterized conser 31.6 6.4E+02 0.014 26.6 19.1 219 205-426 252-515 (665)
442 PF12069 DUF3549: Protein of u 30.1 5.3E+02 0.012 25.2 13.7 23 231-253 171-193 (340)
443 PF12926 MOZART2: Mitotic-spin 29.9 2.4E+02 0.0053 21.2 8.1 41 177-217 29-69 (88)
444 PF09454 Vps23_core: Vps23 cor 29.6 91 0.002 22.0 3.6 29 158-186 10-38 (65)
445 PF09454 Vps23_core: Vps23 cor 29.6 1.2E+02 0.0027 21.3 4.2 28 193-220 10-37 (65)
446 PRK11639 zinc uptake transcrip 29.2 3.2E+02 0.0068 23.6 7.7 57 114-171 19-75 (169)
447 KOG1258 mRNA processing protei 28.8 7.2E+02 0.016 26.3 31.3 87 98-185 91-180 (577)
448 PF04190 DUF410: Protein of un 28.4 5E+02 0.011 24.3 19.8 159 98-291 2-170 (260)
449 COG5187 RPN7 26S proteasome re 28.2 5.3E+02 0.012 24.6 13.1 97 190-289 114-219 (412)
450 PRK07003 DNA polymerase III su 28.1 7.8E+02 0.017 27.4 11.6 19 311-329 259-277 (830)
451 PRK14958 DNA polymerase III su 27.4 7.4E+02 0.016 26.0 12.0 93 243-338 181-286 (509)
452 PRK11639 zinc uptake transcrip 26.9 2.8E+02 0.006 24.0 6.9 58 289-347 18-75 (169)
453 PF09477 Type_III_YscG: Bacter 26.6 3.3E+02 0.0071 21.6 10.2 29 259-289 68-96 (116)
454 PRK09857 putative transposase; 26.6 5.7E+02 0.012 24.4 10.6 62 161-223 211-272 (292)
455 PF09986 DUF2225: Uncharacteri 26.6 4.8E+02 0.01 23.6 10.7 24 197-220 171-194 (214)
456 KOG0376 Serine-threonine phosp 26.4 1.3E+02 0.0029 30.5 5.3 53 130-184 13-66 (476)
457 KOG4642 Chaperone-dependent E3 26.4 5.3E+02 0.011 23.9 10.8 79 135-217 24-104 (284)
458 PF09670 Cas_Cas02710: CRISPR- 26.3 6.6E+02 0.014 25.1 12.8 55 200-255 140-198 (379)
459 cd00245 Glm_e Coenzyme B12-dep 26.2 66 0.0014 32.4 3.2 19 505-523 359-377 (428)
460 PRK12798 chemotaxis protein; R 25.9 7E+02 0.015 25.2 21.4 197 77-290 76-285 (421)
461 PF12926 MOZART2: Mitotic-spin 25.8 2.9E+02 0.0064 20.8 7.9 42 142-183 29-70 (88)
462 PF07575 Nucleopor_Nup85: Nup8 25.8 3.5E+02 0.0075 28.8 8.8 95 227-326 373-467 (566)
463 PF10255 Paf67: RNA polymerase 25.3 7.1E+02 0.015 25.1 10.6 57 267-323 127-190 (404)
464 COG4941 Predicted RNA polymera 25.2 6.5E+02 0.014 24.6 11.1 113 313-428 272-395 (415)
465 PF14561 TPR_20: Tetratricopep 25.0 3.1E+02 0.0067 20.7 8.4 18 234-251 30-47 (90)
466 PF15297 CKAP2_C: Cytoskeleton 24.7 5.3E+02 0.011 25.3 8.7 44 300-343 143-186 (353)
467 PF04124 Dor1: Dor1-like famil 24.6 3E+02 0.0066 26.9 7.6 26 402-427 110-135 (338)
468 KOG3807 Predicted membrane pro 24.4 6.6E+02 0.014 24.4 13.4 106 170-291 230-340 (556)
469 PF03745 DUF309: Domain of unk 24.3 2.5E+02 0.0055 19.5 5.1 15 133-147 11-25 (62)
470 PF07720 TPR_3: Tetratricopept 24.2 1.5E+02 0.0032 18.0 3.3 22 401-422 4-25 (36)
471 PF11123 DNA_Packaging_2: DNA 24.1 2.9E+02 0.0062 20.1 5.1 33 241-275 12-44 (82)
472 PF11768 DUF3312: Protein of u 24.0 8.6E+02 0.019 25.5 10.9 59 125-185 412-473 (545)
473 PF10255 Paf67: RNA polymerase 24.0 3.6E+02 0.0078 27.2 7.8 27 101-127 6-37 (404)
474 PRK09462 fur ferric uptake reg 23.9 4.3E+02 0.0093 22.1 7.8 36 206-241 32-67 (148)
475 cd07153 Fur_like Ferric uptake 23.9 1.9E+02 0.0041 22.9 5.1 42 306-347 9-50 (116)
476 PRK10941 hypothetical protein; 23.8 6.2E+02 0.013 23.9 10.8 60 125-185 185-244 (269)
477 smart00544 MA3 Domain in DAP-5 23.8 3.6E+02 0.0077 21.1 10.0 61 125-187 6-68 (113)
478 PRK09462 fur ferric uptake reg 23.7 4.3E+02 0.0094 22.0 7.8 58 147-205 8-66 (148)
479 PF09868 DUF2095: Uncharacteri 23.6 3.1E+02 0.0068 21.8 5.7 23 234-256 69-91 (128)
480 PF15297 CKAP2_C: Cytoskeleton 23.6 7.1E+02 0.015 24.4 9.9 45 264-308 142-186 (353)
481 KOG2582 COP9 signalosome, subu 23.2 7.4E+02 0.016 24.5 13.7 96 158-254 104-211 (422)
482 KOG0376 Serine-threonine phosp 23.2 1.8E+02 0.0039 29.6 5.5 106 198-309 11-117 (476)
483 TIGR01503 MthylAspMut_E methyl 23.2 95 0.0021 31.4 3.6 46 171-219 69-114 (480)
484 COG5116 RPN2 26S proteasome re 23.2 8.2E+02 0.018 25.8 10.0 27 401-427 211-237 (926)
485 TIGR03581 EF_0839 conserved hy 23.0 2.3E+02 0.005 25.5 5.5 82 206-288 136-234 (236)
486 PF04034 DUF367: Domain of unk 22.8 4.3E+02 0.0092 21.6 6.7 57 227-287 67-124 (127)
487 PRK07003 DNA polymerase III su 22.6 1.1E+03 0.024 26.3 16.0 85 102-189 180-278 (830)
488 COG5210 GTPase-activating prot 22.4 7.8E+02 0.017 25.7 10.5 117 210-332 361-481 (496)
489 KOG2391 Vacuolar sorting prote 22.3 7.3E+02 0.016 24.1 13.2 49 190-239 298-346 (365)
490 PF02607 B12-binding_2: B12 bi 22.1 1.7E+02 0.0036 21.2 4.1 35 134-168 14-48 (79)
491 PF09868 DUF2095: Uncharacteri 22.1 3.6E+02 0.0079 21.5 5.8 21 166-186 71-91 (128)
492 cd07153 Fur_like Ferric uptake 22.0 2.3E+02 0.005 22.3 5.3 31 210-240 19-49 (116)
493 PRK04946 hypothetical protein; 22.0 4.7E+02 0.01 23.0 7.3 62 442-514 97-160 (181)
494 PF04034 DUF367: Domain of unk 21.5 4.1E+02 0.0088 21.7 6.2 56 367-423 68-124 (127)
495 KOG2396 HAT (Half-A-TPR) repea 21.5 9.3E+02 0.02 25.0 20.5 188 139-339 300-501 (568)
496 PF11768 DUF3312: Protein of u 21.3 9.7E+02 0.021 25.2 10.6 22 231-252 413-434 (545)
497 PF07064 RIC1: RIC1; InterPro 21.1 6.9E+02 0.015 23.4 15.5 25 125-149 86-110 (258)
498 PRK14956 DNA polymerase III su 21.1 9.5E+02 0.02 25.0 12.2 35 261-295 247-281 (484)
499 PF12796 Ank_2: Ankyrin repeat 21.0 1.4E+02 0.0031 21.9 3.7 75 141-225 10-86 (89)
500 PRK14958 DNA polymerase III su 21.0 9.7E+02 0.021 25.1 13.0 96 103-201 182-290 (509)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-60 Score=515.89 Aligned_cols=437 Identities=19% Similarity=0.297 Sum_probs=280.0
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 172 (546)
+..|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE--KGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666654 3555666666666666666666666666666
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
+|.+.|. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 604 ~M~e~gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 604 MIHEYNI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 6665554 555556666666666666666666666655555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh-HHHHHHHHhhhhhcchHHHHHHHHHhccc---CccchhhHHHH
Q 009025 331 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-YVVKLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLI 405 (546)
Q Consensus 331 ~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~-~~~~~L~~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~~li 405 (546)
|..+|+.++.+|++.|+ ++|.++|+.|.+.+...+ ..++.|+.+|++.| ..++|.++|++|.. .||..+|++||
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G-~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN-QLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55555555555555555 555555555544322211 22355555555555 33555555554432 23444444444
Q ss_pred HHHHhcCCHH----------------------------------------------------------------------
Q 009025 406 DLCVNLNLLE---------------------------------------------------------------------- 415 (546)
Q Consensus 406 ~~~~~~g~~~---------------------------------------------------------------------- 415 (546)
.+|++.|+++
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 4444443333
Q ss_pred --------------------------------------------------------HHHHHHHHHHhcccccCccccCcc
Q 009025 416 --------------------------------------------------------NACKLLELGLTLEVYTDIQSRSPT 439 (546)
Q Consensus 416 --------------------------------------------------------~A~~~~~~m~~~g~~p~~~~~~~~ 439 (546)
+|+.+|++|...|+.|+....+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~- 920 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKS- 920 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccC-
Confidence 34444444445555555443333
Q ss_pred ceeecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceE-EEeecccccccchh---------HHHHHHHHhhhcCCCC
Q 009025 440 QWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLG-INTGHGKHKYSDKG---------LASVFESHLKELNAPF 509 (546)
Q Consensus 440 ~~~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~-~~~~~~~~~~~~~~---------l~~~~~~~l~~l~~~f 509 (546)
.|.++++.++.|+|..++..|++.++.+++.|.++|.... +.| .++|.++..| +++++..+|++|..||
T Consensus 921 ~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~ 999 (1060)
T PLN03218 921 PIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT-EKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPY 999 (1060)
T ss_pred ceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeecc-ccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 7999999999999999999999999999999999999888 444 5555555444 8999999999999999
Q ss_pred CCCCCCcceEEEeHHHHHHHhhcCC
Q 009025 510 HDSPDKVGWFLTTEAAAKSWLESRS 534 (546)
Q Consensus 510 ~~~~~~~G~~~~~~~~l~~wl~~~~ 534 (546)
+..++. |+|..++.++++||+..-
T Consensus 1000 ~~~~~~-g~~~~~~~~~~~wl~~~~ 1023 (1060)
T PLN03218 1000 QGSESH-GKLRINGLSLRRWFQPKL 1023 (1060)
T ss_pred CCCCCC-CeEEeccHHHHHHhcccC
Confidence 999988 999999999999999874
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-52 Score=448.16 Aligned_cols=365 Identities=20% Similarity=0.318 Sum_probs=335.6
Q ss_pred hhhccchhhhcCCHHHHHHHHHHHHhCCCc--------------------------------cCHHHHHHHHHHHHHcCC
Q 009025 89 KLKEKSYDTRAGNVEMAFGLYDRARNEKWR--------------------------------IDPNAFSTLIKLYGTAGN 136 (546)
Q Consensus 89 ~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~--------------------------------~~~~~~~~li~~~~~~g~ 136 (546)
.+.....+++.|++++|+++|++|.+.|+. ||..+|+.+|.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 344555666889999999999999887753 788999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009025 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 216 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 216 (546)
+++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009025 217 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS--SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294 (546)
Q Consensus 217 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 294 (546)
|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|. .||..+|++||.+|++.|++++|.++|++|.+.|+.
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi-~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI-DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999986 454 899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh-HHHHHHH
Q 009025 295 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-YVVKLLL 372 (546)
Q Consensus 295 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~-~~~~~L~ 372 (546)
|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+ ++|.++++.|.+.+...+ ..++.|+
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999876554 4569999
Q ss_pred HhhhhhcchHHHHHHHHHhccc---CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccc
Q 009025 373 EEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS 449 (546)
Q Consensus 373 ~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~ 449 (546)
.+|+++| .+++|.++|+.|.. .|+..+||+||.+|++.|++++|.++|++|...|+.||..+|+ .++.++.
T Consensus 692 ~ay~k~G-~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~-----sLL~a~~ 765 (1060)
T PLN03218 692 GACSNAK-NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS-----ILLVASE 765 (1060)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHH
Confidence 9999999 56999999999863 6899999999999999999999999999999999999988864 3455555
Q ss_pred h-hhHHHHHHHH
Q 009025 450 L-GAALTALHIW 460 (546)
Q Consensus 450 ~-g~~~~a~~~~ 460 (546)
. |....|...+
T Consensus 766 k~G~le~A~~l~ 777 (1060)
T PLN03218 766 RKDDADVGLDLL 777 (1060)
T ss_pred HCCCHHHHHHHH
Confidence 4 5555555433
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.6e-51 Score=436.62 Aligned_cols=335 Identities=14% Similarity=0.201 Sum_probs=262.9
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCC-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
..+..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||.|+.+|++.
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 45566778999999999999998754 67899999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
|+++.|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++
T Consensus 172 g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 172 GMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999985 37889999999999999999999999999988888888888877777777777777777777
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (546)
..+.+.|. .+|..+|++||.+|++.|++++|.++|++|.+ +|.++||.||.+|++.|++++|+++|++|.+.|+.
T Consensus 248 ~~~~~~g~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 248 CCVLKTGV-VGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHhCC-CccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 77777775 77777777777777777777777777777754 57777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH-HHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHH
Q 009025 330 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY-VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDL 407 (546)
Q Consensus 330 p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~-~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~ 407 (546)
||..||+.++.+|++.|. ++|.+++..|.+.+...+. +.+.|+.+|+++| .+++|.++|+.|.. +|..+||+||.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G-~~~~A~~vf~~m~~-~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-RMEDARNVFDRMPR-KNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC-CHHHHHHHHHhCCC-CCeeeHHHHHHH
Confidence 777777777777777777 7777777777776644333 4477777777777 44777777777754 466677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcccccCcccc
Q 009025 408 CVNLNLLENACKLLELGLTLEVYTDIQSR 436 (546)
Q Consensus 408 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 436 (546)
|+++|+.++|+++|++|.+.|+.||..||
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 77777777777777777666666665554
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-48 Score=424.91 Aligned_cols=410 Identities=15% Similarity=0.168 Sum_probs=289.4
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
.+..|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 4567778888888888888886 357888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (546)
.+.|.+++..|.+.|+.||..+|++||.+|+++|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888877777777777777777777666666666655532 3444555555555555555555555555
Q ss_pred HHhCCC----------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 009025 252 MKSSEN----------------------------------CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA------ 291 (546)
Q Consensus 252 m~~~~~----------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 291 (546)
|.+.|. +.|+..+|++||.+|++.|++++|.++|++|.+.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~ 459 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHH
Confidence 544442 1344444455555555555555555555544321
Q ss_pred ------------------------CC------------------------------------------------------
Q 009025 292 ------------------------GF------------------------------------------------------ 293 (546)
Q Consensus 292 ------------------------~~------------------------------------------------------ 293 (546)
++
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 11
Q ss_pred -----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH-c
Q 009025 294 -----------EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-S 360 (546)
Q Consensus 294 -----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~-~ 360 (546)
.+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|. +++.++|+.|.+ .
T Consensus 540 ~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 540 MNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 345666777888888888888888888888888888888888888888888888 888888888873 2
Q ss_pred --CCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCc
Q 009025 361 --NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSP 438 (546)
Q Consensus 361 --~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 438 (546)
.|+. ..++.++.++++.| .+++|.+++++|+..|+..+|++|+.+|..+|+.+.|..+.+++.+. .|+...
T Consensus 620 gi~P~~-~~y~~lv~~l~r~G-~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~--- 692 (857)
T PLN03077 620 SITPNL-KHYACVVDLLGRAG-KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVG--- 692 (857)
T ss_pred CCCCch-HHHHHHHHHHHhCC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcc---
Confidence 2332 34577888888888 55888888888888888888888888888888888888887777664 466333
Q ss_pred cceeecccccch-hhHHHHHHHHHHHHHHHHHcC-CCCCCceEEEeecccccccchh----HHHHHHHHhhhcCCCCCCC
Q 009025 439 TQWSLHLKSLSL-GAALTALHIWINDLSKALESG-EEFPPLLGINTGHGKHKYSDKG----LASVFESHLKELNAPFHDS 512 (546)
Q Consensus 439 ~~~~~~l~~~~~-g~~~~a~~~~~~~~~~~~~~g-~~~p~~~~~~~~~~~~~~~~~~----l~~~~~~~l~~l~~~f~~~ 512 (546)
.|.++...|.. |...++... .+.+.+.| ++.|+++||..+..+|.|..++ ..++|+..|.+|....+..
T Consensus 693 -~y~ll~n~ya~~g~~~~a~~v----r~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 767 (857)
T PLN03077 693 -YYILLCNLYADAGKWDEVARV----RKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS 767 (857)
T ss_pred -hHHHHHHHHHHCCChHHHHHH----HHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC
Confidence 23333333433 444444422 22224677 8899999999999999998644 6789999888887666654
Q ss_pred CCCcceEEEeHHH
Q 009025 513 PDKVGWFLTTEAA 525 (546)
Q Consensus 513 ~~~~G~~~~~~~~ 525 (546)
||...+...
T Consensus 768 ----g~~~~~~~~ 776 (857)
T PLN03077 768 ----GLAGSESSS 776 (857)
T ss_pred ----CcCCCcchh
Confidence 666655443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=405.21 Aligned_cols=401 Identities=17% Similarity=0.245 Sum_probs=285.1
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-----------------
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY----------------- 159 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----------------- 159 (546)
+++|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|
T Consensus 169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 34444444444444443 235555555555555555555555555555555554444433
Q ss_pred ------------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 160 ------------------NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 160 ------------------~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
|+|+++|++.|++++|.++|++|. .+|..+||+||.+|++.|++++|+++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 333333444444444444444432 2345566666666666666666666666776667
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
+.||..||++++.+|++.|++++|.+++++|.+.|. .||..+|++||.+|+++|++++|.++|++|.+ ||..+||
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 777777777777777777777777777777777664 67777777777777777777888888877764 7889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc-CCChh-HHHHHHHHhhhhh
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS-NSKLG-YVVKLLLEEQDIE 378 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~-~~~~~-~~~~~L~~~~~~~ 378 (546)
.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|. +++.++|+.|.+. +.... ..++.++.+|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999 9999999999763 32222 3458888999999
Q ss_pred cchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccch-hhHHHHH
Q 009025 379 GDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTAL 457 (546)
Q Consensus 379 g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~~-g~~~~a~ 457 (546)
| .+++|.++++++...|+..+|++|+.+|..+|+++.|..+++++.+. .|+. ...|..++..|.. |...+|.
T Consensus 476 G-~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~----~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 476 G-LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEK----LNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred C-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCC----CcchHHHHHHHHhCCCHHHHH
Confidence 9 56999999999999999999999999999999999999999998654 4652 2234556666666 5566665
Q ss_pred HHHHHHHHHHHHcC-CCCCCceEEEeecccccccchh----HHHHHHHHhhhcCCCCCCCCCCcceEEEeHHH
Q 009025 458 HIWINDLSKALESG-EEFPPLLGINTGHGKHKYSDKG----LASVFESHLKELNAPFHDSPDKVGWFLTTEAA 525 (546)
Q Consensus 458 ~~~~~~~~~~~~~g-~~~p~~~~~~~~~~~~~~~~~~----l~~~~~~~l~~l~~~f~~~~~~~G~~~~~~~~ 525 (546)
..+ + ++.+.| ++.|++.|+..+..+|.|..++ ..++|+..|.+|....+.. ||...+...
T Consensus 549 ~v~-~---~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~----gy~~~~~~~ 613 (697)
T PLN03081 549 KVV-E---TLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY----GYVAEENEL 613 (697)
T ss_pred HHH-H---HHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHc----CCCCCcchh
Confidence 433 2 334567 7789999999999999988643 5678888887776555554 666555443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-47 Score=420.79 Aligned_cols=354 Identities=15% Similarity=0.137 Sum_probs=311.1
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
..+..+++.++++.+.+++..|.+.|+.||..+||+||.+|++.|++++|..+|++|. .||.++||++|.+|++.|
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENG 267 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCC
Confidence 3455677899999999999999999999999999999999999999999999999997 479999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
++++|.++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|+
T Consensus 268 ~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
+|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 348 ~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 348 RME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 996 688999999999999999999999999999999999999888888888888888888888888888888777
Q ss_pred CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc--------------------------------CCChh------------
Q 009025 331 DDRFCGCLLNVMTQTPK-EELGKLVECVEKS--------------------------------NSKLG------------ 365 (546)
Q Consensus 331 ~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~--------------------------------~~~~~------------ 365 (546)
+..+|+.|+++|++.|+ ++|.++|+.|.+. .|+..
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI 502 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh
Confidence 77777777777777777 7776666554321 12221
Q ss_pred ---------------------H-HHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009025 366 ---------------------Y-VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 423 (546)
Q Consensus 366 ---------------------~-~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (546)
. +.+.|+.+|+++| .+++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G-~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG-RMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC-CHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 2267789999999 569999999998 67999999999999999999999999999
Q ss_pred HHhcccccCccccCccceeecccccch-hhHHHHHHHHH
Q 009025 424 GLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWI 461 (546)
Q Consensus 424 m~~~g~~p~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~ 461 (546)
|.+.|+.||..||+ .++.+++. |...++...+.
T Consensus 580 M~~~g~~Pd~~T~~-----~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 580 MVESGVNPDEVTFI-----SLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHcCCCCCcccHH-----HHHHHHhhcChHHHHHHHHH
Confidence 99999999988864 35556665 55555554443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=1e-19 Score=203.69 Aligned_cols=320 Identities=14% Similarity=0.068 Sum_probs=167.4
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 175 (546)
+...|++++|...|+.+.+... .+..++..+...+.+.|++++|..+|+++.+.+ +.+...+..++..+.+.|++++|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 3456666666666666665432 255566666666666666666666666665543 23444555555666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
.++++.+.+.. +.+...|..+..+|.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|..+|+++...
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666655432 2345555666666666666666666666555443 124445555555555666666666666555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 009025 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335 (546)
Q Consensus 256 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 335 (546)
. +.+..++..++..+...|++++|.++++.+.+.+. .+...+..+...+...|++++|...|+++.+.+ |+..++
T Consensus 665 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 665 K--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 3 33455555555555555555555555555554432 234444555555555555555555555554432 333444
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--CccchhhHHHHHHHHhcC
Q 009025 336 GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLN 412 (546)
Q Consensus 336 ~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g 412 (546)
..+..++.+.|+ ++|.+.++.+.+..|+...+...++..|...|+ .++|.+.|+++.. +.+..+++.++..+.+.|
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD-YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 444445555555 555555555544444444444444444444442 2445554444321 112334444444444444
Q ss_pred CHHHHHHHHHHHHh
Q 009025 413 LLENACKLLELGLT 426 (546)
Q Consensus 413 ~~~~A~~~~~~m~~ 426 (546)
+ ++|+..++++.+
T Consensus 819 ~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 819 D-PRALEYAEKALK 831 (899)
T ss_pred c-HHHHHHHHHHHh
Confidence 4 444444444443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=1.5e-19 Score=202.40 Aligned_cols=336 Identities=13% Similarity=0.042 Sum_probs=282.1
Q ss_pred CCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 009025 82 PKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 161 (546)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 161 (546)
|.++.... .....+.+.|++++|...|+++.+... .+...+..+...+...|++++|.++|+++.+.. +.+..++..
T Consensus 462 ~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 538 (899)
T TIGR02917 462 PDNASLHN-LLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA 538 (899)
T ss_pred CCCcHHHH-HHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 33444333 334455588999999999999987643 367788889999999999999999999998865 457788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
+...+.+.|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+...|..+...|...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998864 3467788889999999999999999999998764 4478899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009025 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 321 (546)
+++|...|+++.+.. +.+...+..+...|.+.|++++|..+|+++.+... .+..++..++..+...|++++|..+++
T Consensus 617 ~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998765 56778899999999999999999999999987543 357889999999999999999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--Cccc
Q 009025 322 RLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKK 398 (546)
Q Consensus 322 ~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--~~~~ 398 (546)
.+.+.+ ..+...+..+...+...|+ ++|.+.++.+....|+. ..+..++..+...|+ .++|.+.++.+.. +.+.
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~ 770 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGN-TAEAVKTLEAWLKTHPNDA 770 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCH
Confidence 998764 4466778888889999999 99999999999888877 445667788888884 5899988887643 2356
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
..+..+...|.+.|++++|.++|+++.+..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 688999999999999999999999998765
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=8e-20 Score=184.36 Aligned_cols=300 Identities=11% Similarity=0.044 Sum_probs=222.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRA 204 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~ 204 (546)
...+...|++++|+..|+++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567788888888888888764 23455777888888888888888888888877532221 24577778888888
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 280 (546)
|++++|+.+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+. .+. ...+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 88888888888887653 33567788888888888888888888888877542 221 1235567777788888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 281 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
|.++|+++.+... .+...+..+...|.+.|++++|.++|+++.+.+......++..+..++...|+ ++|...++.+.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888876542 24567777788888888888888888888764322223567778888888888 888888888888
Q ss_pred cCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCccchhhHHHHHHHHh---cCCHHHHHHHHHHHHhcccccCc
Q 009025 360 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVN---LNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 360 ~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
..|+.... ..++..+.+.| ..++|..+++.+ ...|+...++.++..+.. .|+.++++.++++|.+.++.|+-
T Consensus 278 ~~p~~~~~-~~la~~~~~~g-~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 EYPGADLL-LALAQLLEEQE-GPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hCCCchHH-HHHHHHHHHhC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 77766443 67778888888 458899988764 445777788888888775 56899999999999998887774
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=8.7e-19 Score=176.82 Aligned_cols=291 Identities=15% Similarity=0.139 Sum_probs=238.9
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCh
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRAKRP 172 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~ 172 (546)
+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3478999999999999998743 3667899999999999999999999999987532222 25688889999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCADVGYTDEAFEI 248 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~ 248 (546)
++|..+|+++.+.. +.+..+++.++.+|.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|.++
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999998863 34678999999999999999999999999988754332 22456778888999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009025 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328 (546)
Q Consensus 249 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 328 (546)
|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 203 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 203 LKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 99998764 45677888999999999999999999999997643333567889999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhh--hcchHHHHHHHHHhcc
Q 009025 329 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI--EGDFKKEATELFNSIS 393 (546)
Q Consensus 329 ~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~--~g~~~~~A~~~~~~~~ 393 (546)
.|+...+..+...+.+.|+ ++|..+++.+.+..|+...+...+...+.. .| ..+++..+++.+.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g-~~~~a~~~~~~~~ 345 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG-RAKESLLLLRDLV 345 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc-cchhHHHHHHHHH
Confidence 5777777889999999999 999999999999988877554444333211 23 3477887777654
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.1e-16 Score=170.08 Aligned_cols=323 Identities=12% Similarity=0.055 Sum_probs=259.5
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
...+.|++++|+.+++........ +...+..++.+....|++++|+..|+++.+.. +.+...+..+...+.+.|++++
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 344889999999999999887544 55666777778888999999999999998874 3456678888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
|...++++.+.. +.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|+..++.+..
T Consensus 129 Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 129 VADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 999999998852 235678888999999999999999999988766433 33344333 347889999999999999877
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHhhhCCCCC
Q 009025 255 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD----VVRALNRLPELGITP 330 (546)
Q Consensus 255 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p 330 (546)
... .++...+..+...+...|++++|...|+++.+.... +...+..+...|...|++++ |...|++..+. .|
T Consensus 206 ~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P 281 (656)
T PRK15174 206 FFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NS 281 (656)
T ss_pred cCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CC
Confidence 642 344555566678889999999999999999976533 57788889999999999986 79999998874 45
Q ss_pred C-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cCccch-hhHHHHH
Q 009025 331 D-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKA-YCNCLID 406 (546)
Q Consensus 331 ~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~~~~~-~~~~li~ 406 (546)
+ ...+..+...+...|+ ++|...++.+....|+...+...++..+...|+ .++|...|+.+. ..|+.. .+..+..
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~-~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ-YTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4 5678888999999999 999999999999999988888889999988884 599999998865 345443 3444677
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 009025 407 LCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 407 ~~~~~g~~~~A~~~~~~m~~~ 427 (546)
++...|+.++|...|+++.+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 889999999999999988654
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1.2e-15 Score=162.42 Aligned_cols=357 Identities=13% Similarity=0.021 Sum_probs=266.8
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
..+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445889999999999999876 5788899999999999999999999999999874 335678888999999999999
Q ss_pred HHHHHHHHHHHCCCC----------------------------C----CHHHHHHH------------------------
Q 009025 174 QVKTIYKEMTDNGLS----------------------------P----NWNTYASL------------------------ 197 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~----------------------------p----~~~~~~~l------------------------ 197 (546)
+|+.-|......+-. | ........
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 998766544322100 0 00000000
Q ss_pred ---HHHH------HhcCChHHHHHHHHHHHHcC-C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009025 198 ---LRAY------GRARYGEDTLSVYREMKEKG-M-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266 (546)
Q Consensus 198 ---l~~~------~~~g~~~~A~~~~~~m~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 266 (546)
+..+ ...+++++|.+.|++..+.+ . +.....|+.+...+...|++++|+..|++..... +-+...|.
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~ 369 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYI 369 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHH
Confidence 0000 12257889999999998764 2 2245678888889999999999999999998864 44577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcC
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQT 345 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~ 345 (546)
.+...+...|++++|...|++..+... .+...|..+...|...|++++|+..|++.++. .|+ ...+..+..++.+.
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHC
Confidence 999999999999999999999987643 25788999999999999999999999999874 454 56677788888899
Q ss_pred CH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cCcc-ch-------hhHHHHHHHHhcCCHH
Q 009025 346 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVK-KA-------YCNCLIDLCVNLNLLE 415 (546)
Q Consensus 346 g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~~~-~~-------~~~~li~~~~~~g~~~ 415 (546)
|+ ++|...++...+..|....++..++..+...|+ .++|++.|+... ..|+ .. .++..+..+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99 999999999999999988888999999999895 599999998743 2222 11 1222233344579999
Q ss_pred HHHHHHHHHHhcccccCccccCccceeeccccc-chhhHHHHHHHHHHHHH
Q 009025 416 NACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL-SLGAALTALHIWINDLS 465 (546)
Q Consensus 416 ~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~-~~g~~~~a~~~~~~~~~ 465 (546)
+|.+++++.+... |+.. ..|..+...+ ..|...+|+..+.+.++
T Consensus 526 eA~~~~~kAl~l~--p~~~----~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 526 EAENLCEKALIID--PECD----IAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHhcC--CCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999988764 5532 1222222222 34777777765544433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=2e-17 Score=160.61 Aligned_cols=329 Identities=15% Similarity=0.095 Sum_probs=259.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-LL 198 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll 198 (546)
-..+|..+.+.+-..|++++|+.+|+.|.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+.....+ +.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 56688889999999999999999999999874 235678999999999999999999999988874 566554443 44
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
..+...|+.++|...|.+.++.... =.+.|+.|...+-..|++..|++.|++....+ +--...|..|...|...+.+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcc
Confidence 4555679999999999988876322 25778999999999999999999999998865 33456889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHH
Q 009025 279 SEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK-EELGKLVE 355 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~ 355 (546)
++|...|.+.... +|+ .+.|..|...|...|..|-|+..|++.++ +.|+- ..|+.|.+++...|. .+|...|.
T Consensus 269 d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 269 DRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred hHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 9999999888763 454 56777888888999999999999999887 46764 679999999999999 99999999
Q ss_pred HHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Ccc-chhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 356 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
+.....|......+.|+..|...| .+++|..+|...-. .|. ...+|.|...|-++|++++|+..+++.++.. |+.
T Consensus 345 kaL~l~p~hadam~NLgni~~E~~-~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~f 421 (966)
T KOG4626|consen 345 KALRLCPNHADAMNNLGNIYREQG-KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PTF 421 (966)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhc-cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--chH
Confidence 999999999999999999998888 56999988877533 333 4478999999999999999999999887643 652
Q ss_pred cccCccceeecccccch-hhHHHHHHHHHHHHH
Q 009025 434 QSRSPTQWSLHLKSLSL-GAALTALHIWINDLS 465 (546)
Q Consensus 434 ~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~~~ 465 (546)
+..++.+...+.. |....|+..+...|.
T Consensus 422 ----Ada~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 422 ----ADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred ----HHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 1222333333333 666677766555544
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=1.2e-15 Score=162.04 Aligned_cols=303 Identities=10% Similarity=0.008 Sum_probs=248.8
Q ss_pred cCCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009025 80 VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159 (546)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 159 (546)
..|.++.+......... ..|++++|+..|+.+....+. +...+..+...+.+.|++++|++.|+++.+.. +.+...+
T Consensus 71 ~~p~~~~~l~~l~~~~l-~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~ 147 (656)
T PRK15174 71 TAKNGRDLLRRWVISPL-ASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIF 147 (656)
T ss_pred hCCCchhHHHHHhhhHh-hcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 46666766666555554 799999999999999987433 67789999999999999999999999998863 3456788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009025 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 239 (546)
..+..++...|++++|...++.+...... +...+..+ ..+.+.|++++|+..++.+.+....++...+..+...+...
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 225 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV 225 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC
Confidence 88999999999999999999988775432 33344333 35788999999999999988765444555566667889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE----AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 315 (546)
|++++|+..|++..... +.+...+..+...|...|++++ |...|++..+.... +...+..+...+.+.|++++
T Consensus 226 g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 226 GKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999875 5678889999999999999986 89999999986433 57789999999999999999
Q ss_pred HHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc
Q 009025 316 VVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393 (546)
Q Consensus 316 A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~ 393 (546)
|+..+++..+. .|+ ...+..+..++.+.|+ ++|...++.+...+|........++.++...| ..++|...|+...
T Consensus 303 A~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G-~~deA~~~l~~al 379 (656)
T PRK15174 303 AIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAG-KTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC-CHHHHHHHHHHHH
Confidence 99999999875 454 4567778889999999 99999999999999887665556677778888 4599999998753
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=1.7e-16 Score=154.26 Aligned_cols=326 Identities=15% Similarity=0.180 Sum_probs=259.6
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----------------
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI---------------- 157 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------------- 157 (546)
..+...|++++|+.+++.+.+...+ .+..|..+..++...|+.+.|.+.|.+.++. .|+..
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhccc
Confidence 3455789999999999999987433 6778999999999999999999988888765 34432
Q ss_pred -------------------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009025 158 -------------------TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREM 217 (546)
Q Consensus 158 -------------------~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m 217 (546)
.|..|.-.+-..|+...|+..|++..+. .|+ ...|-.|...|...+.+++|...|.+.
T Consensus 201 ~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 2333444445567777777777777663 344 467788888888888888888888877
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 009025 218 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 297 (546)
Q Consensus 218 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 297 (546)
..... -..+.+..|...|...|.+|.|+..|++..+.. +--...|+.|..++-..|++.+|.+.|++.+..... ..
T Consensus 279 l~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-ha 354 (966)
T KOG4626|consen 279 LNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HA 354 (966)
T ss_pred HhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cH
Confidence 66521 146677778888888999999999999988864 344678999999999999999999999998874322 36
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 009025 298 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ 375 (546)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~ 375 (546)
...+.|...|...|.+++|..+|....+ +.|+- ..++.|...|.+.|+ ++|...|++..++.|.....++.+|..|
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence 7788899999999999999999998887 55654 468889999999999 9999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHhc-ccCcc-chhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 376 DIEGDFKKEATELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 376 ~~~g~~~~~A~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
...| .++.|...+.+. ...|. ...++.|...|...|+..+|+.-++..++.. ||.
T Consensus 433 ke~g-~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk--PDf 489 (966)
T KOG4626|consen 433 KEMG-DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK--PDF 489 (966)
T ss_pred HHhh-hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC--CCC
Confidence 8888 458888777654 44443 4588999999999999999999999987754 774
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=6.1e-15 Score=167.34 Aligned_cols=327 Identities=13% Similarity=0.063 Sum_probs=241.2
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHH------------H
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYN------------N 161 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~------------~ 161 (546)
.+...|++++|+..|++..+.... +..++..|..+|.+.|++++|+..|++..+..... +...|. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 344789999999999999986433 78899999999999999999999999998763211 111121 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH----------
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT---------- 231 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------- 231 (546)
....+.+.|++++|+..|+++++.. +.+...+..+..+|...|++++|++.|+++.+.... +...+..
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCH
Confidence 2445778999999999999999864 336677888899999999999999999998875322 2333322
Q ss_pred --------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 232 --------------------------------LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 232 --------------------------------li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
+...+...|++++|++.|++..+.. +-+...+..+...|.+.|+++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 2334556789999999999988765 456777888899999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---------------------------------
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL--------------------------------- 326 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------------------- 326 (546)
+|...|+++.+.... +...+..+...+...|+.++|+..++.+...
T Consensus 513 ~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 999999998764322 3333333333334444444444444332110
Q ss_pred ------CCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-c
Q 009025 327 ------GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-K 397 (546)
Q Consensus 327 ------~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~ 397 (546)
....+...+..+...+.+.|+ ++|...++.+.+..|+.......++..|...|+ .++|++.++.+.. .| +
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD-LAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhccCCCC
Confidence 012334456677778888888 999999999999999988888888999988884 5999999988654 23 3
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
...+..+..++.+.|++++|.+++++++...
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 4567788889999999999999999987654
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=1.5e-14 Score=154.04 Aligned_cols=329 Identities=14% Similarity=0.059 Sum_probs=252.4
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-------------------
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV------------------- 152 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------- 152 (546)
....+.+.|++++|+..++..++.... +...|..+..+|...|++++|+.-|......+-
T Consensus 166 ~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 244 (615)
T TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAE 244 (615)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 334566889999999999999987433 677899999999999999999876654432110
Q ss_pred ---------CCC----HHHHHHH---------------------------HHHH------HhcCChhHHHHHHHHHHHCC
Q 009025 153 ---------KPN----MITYNNL---------------------------LDTM------GRAKRPWQVKTIYKEMTDNG 186 (546)
Q Consensus 153 ---------~p~----~~~~~~l---------------------------l~~~------~~~g~~~~a~~~~~~m~~~g 186 (546)
.|. ....... +... ...+++++|.+.|++.++.+
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 245 SKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 000 0000000 0000 11257889999999998865
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH
Q 009025 187 -LSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264 (546)
Q Consensus 187 -~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 264 (546)
..| +...++.+...+...|++++|+..|++..+... -+...|..+...+...|++++|+..|++..+.. +.+..+
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~ 401 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDI 401 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 223 456788888999999999999999999988642 246788899999999999999999999998875 567889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHh
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMT 343 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~ 343 (546)
|..+...+...|++++|...|++.++.... +...+..+...+.+.|++++|+..|++..+. .| +...+..+..++.
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 999999999999999999999999986532 5777888999999999999999999999874 34 4678888999999
Q ss_pred cCCH-HHHHHHHHHHHHcCCChhHHH-------HHHHHhhhhhcchHHHHHHHHHhc-ccCcc-chhhHHHHHHHHhcCC
Q 009025 344 QTPK-EELGKLVECVEKSNSKLGYVV-------KLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAYCNCLIDLCVNLNL 413 (546)
Q Consensus 344 ~~g~-~~a~~~~~~~~~~~~~~~~~~-------~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~-~~~~~~li~~~~~~g~ 413 (546)
..|+ ++|.+.++......|...... +..+..+...| ..++|.+++++. ...|+ ...+..|...+.+.|+
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC
Confidence 9999 999999999998877643211 11122222235 569999999874 33443 4478999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 009025 414 LENACKLLELGLTLE 428 (546)
Q Consensus 414 ~~~A~~~~~~m~~~g 428 (546)
+++|++.|++..+..
T Consensus 558 ~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 558 VDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987653
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=2.4e-14 Score=162.57 Aligned_cols=347 Identities=12% Similarity=0.022 Sum_probs=252.0
Q ss_pred cCCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCcc-CHHHHH------------HHHHHHHHcCChHHHHHHHHH
Q 009025 80 VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRI-DPNAFS------------TLIKLYGTAGNFDGCLNVYEE 146 (546)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~-~~~~~~------------~li~~~~~~g~~~~A~~~~~~ 146 (546)
.+|.++.+...+. ..+.+.|++++|+..|++..+..... ....|. .+...+.+.|++++|+..|++
T Consensus 298 ~~P~~~~a~~~Lg-~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 ANPKDSEALGALG-QAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4566665544444 34448999999999999998764321 112222 224567788999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH------------------------------
Q 009025 147 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS------------------------------ 196 (546)
Q Consensus 147 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~------------------------------ 196 (546)
+.+.. +.+...+..+..++...|++++|++.|+++++... .+...+..
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 98874 34567788889999999999999999999987532 12333222
Q ss_pred ------------HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH
Q 009025 197 ------------LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 264 (546)
Q Consensus 197 ------------ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 264 (546)
+...+...|++++|++.|++..+.... +...+..+...|.+.|++++|+..|+++.+.. +.+...
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~ 531 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQ 531 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH
Confidence 233455679999999999999887533 57778889999999999999999999988754 334444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------------CCCCCHHHHHHHHH
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLEA---------------------------------------GFEPNLFVLTSLIQ 305 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------------~~~p~~~~~~~li~ 305 (546)
+..+...+...++.++|...++.+... ....+...+..+..
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~ 611 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHH
Confidence 433333344445555554444332110 11234556777888
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHH
Q 009025 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~ 384 (546)
.+.+.|++++|+..|++..+.. ..+...+..+...+...|+ ++|.+.++.+.+..|+.......++..+...|+ .++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~-~~e 689 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGD-TAA 689 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC-HHH
Confidence 9999999999999999999753 2256788899999999999 999999999999888887777888888888884 599
Q ss_pred HHHHHHhcccC-c-------cchhhHHHHHHHHhcCCHHHHHHHHHHHH-hcccccCcc
Q 009025 385 ATELFNSISKD-V-------KKAYCNCLIDLCVNLNLLENACKLLELGL-TLEVYTDIQ 434 (546)
Q Consensus 385 A~~~~~~~~~~-~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ 434 (546)
|.++++.+... + +...+..+...+...|++++|+..|++.+ ..|+.|..+
T Consensus 690 A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p 748 (1157)
T PRK11447 690 AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRP 748 (1157)
T ss_pred HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCC
Confidence 99999987532 1 12356667888999999999999999986 455665543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=6.4e-13 Score=144.39 Aligned_cols=327 Identities=12% Similarity=0.086 Sum_probs=196.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..|+.++|++++....... ..+...+..+...+.+.|++++|..+|++..+.. +.+...+..+..++...|++++|+.
T Consensus 27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 5666777776666665421 3344456666666677777777777777666542 2334555566666666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH-------------
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE------------- 244 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~------------- 244 (546)
.++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...|..++
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~ 181 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPA 181 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHH
Confidence 776666642 22344 666666666667777777777666665322 34444445555544444443
Q ss_pred ---------------------------------HHHHHHHHHhCCCCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHH
Q 009025 245 ---------------------------------AFEIFEDMKSSENCQPDSW-TFS----SMITICSCRGKVSEAEAMFN 286 (546)
Q Consensus 245 ---------------------------------A~~~~~~m~~~~~~~~~~~-~~~----~li~~~~~~g~~~~A~~~~~ 286 (546)
|++.++.+.+...-.|+.. .+. ..+.++...|++++|...|+
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334444443200022211 111 11234456688888888888
Q ss_pred HHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC---CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 009025 287 EMLEAGFE-PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP---DDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361 (546)
Q Consensus 287 ~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~ 361 (546)
++.+.+.. |+. .-..+...|...|++++|+..|+++.+..... .......+..++...|+ ++|..+++.+....
T Consensus 262 ~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 262 RLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 88876532 332 12224667888888888888888876532111 12345556667777777 88888888887765
Q ss_pred CC---------------hhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 362 SK---------------LGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 362 ~~---------------~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
|. .......++..+...| ..++|+++++++.. .| +...+..++..+...|++++|++.++++
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g-~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN-DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 52 1123355666666667 45888888887543 23 4557888888888888888888888887
Q ss_pred HhcccccCc
Q 009025 425 LTLEVYTDI 433 (546)
Q Consensus 425 ~~~g~~p~~ 433 (546)
++.. |+.
T Consensus 420 l~l~--Pd~ 426 (765)
T PRK10049 420 EVLE--PRN 426 (765)
T ss_pred HhhC--CCC
Confidence 7654 664
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=8.9e-13 Score=143.25 Aligned_cols=334 Identities=10% Similarity=0.023 Sum_probs=248.4
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
....+.+.|++++|..+|+...+.. +.+...+..+...+...|++++|+..++++.+.. +.+.. +..+..++...|+
T Consensus 55 lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~ 131 (765)
T PRK10049 55 VAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGR 131 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCC
Confidence 3345558899999999999988763 2357778888899999999999999999998763 34555 8888888999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH--------------------------------------
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV-------------------------------------- 213 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~-------------------------------------- 213 (546)
.++|+..++++.+... .+...+..+..++.+.+..++|++.
T Consensus 132 ~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 132 HWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHH
Confidence 9999999999998642 2455556666666666665544443
Q ss_pred --------HHHHHHc-CCCcCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 214 --------YREMKEK-GMQLSVT-LY----NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 214 --------~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+...|+. ....+...|...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 3343322 1112111 11 111345567799999999999999876311332 2233577899999999
Q ss_pred HHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-----------CCCCH---HHHHHHHHHH
Q 009025 280 EAEAMFNEMLEAGFEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-----------ITPDD---RFCGCLLNVM 342 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~---~t~~~ll~~~ 342 (546)
+|..+|+++.+..... ....+..+..++.+.|++++|..+++++.+.. -.|+. ..+..+...+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 9999999988643221 13456677778899999999999999998642 12342 3455677788
Q ss_pred hcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Ccc-chhhHHHHHHHHhcCCHHHHHH
Q 009025 343 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-KAYCNCLIDLCVNLNLLENACK 419 (546)
Q Consensus 343 ~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~ 419 (546)
...|+ ++|.+.++++....|....++..++..+...| ..++|++.+++... .|+ ...+-.++..+.+.|++++|..
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g-~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG-WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 88899 99999999999999999888899999998888 46999999998653 454 5577788889999999999999
Q ss_pred HHHHHHhcccccCc
Q 009025 420 LLELGLTLEVYTDI 433 (546)
Q Consensus 420 ~~~~m~~~g~~p~~ 433 (546)
+++++++.. |+.
T Consensus 449 ~~~~ll~~~--Pd~ 460 (765)
T PRK10049 449 LTDDVVARE--PQD 460 (765)
T ss_pred HHHHHHHhC--CCC
Confidence 999998754 663
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.68 E-value=7e-13 Score=141.67 Aligned_cols=342 Identities=12% Similarity=0.062 Sum_probs=224.5
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 160 (546)
.|..+.......+..+ +.|+++.|+..|++..+....-.+..+ .++..+...|+.++|+..+++..... ........
T Consensus 30 ~p~~~~~~y~~aii~~-r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 30 NPAMADTQYDSLIIRA-RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred CccchhHHHHHHHHHH-hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 4444554444444444 888888888888888876322112233 77777777788888888887777211 12222333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
.+...+...|++++|.++|+++.+... -+...+..++..|...++.++|++.++++... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 334567777888888888888877642 24566666777777778888888877777665 344444434433343455
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHH------------------------------------------------------
Q 009025 241 YTDEAFEIFEDMKSSENCQPDSWTFS------------------------------------------------------ 266 (546)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~~~~~~------------------------------------------------------ 266 (546)
+..+|++.++++.+.. +-+...+.
T Consensus 184 ~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 184 RNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred hHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 5555777777776653 12222221
Q ss_pred -----------------------------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009025 267 -----------------------------------SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311 (546)
Q Consensus 267 -----------------------------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 311 (546)
=.+-++...|++.++++.|+.|...+...-..+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 112245566777777777877777665434456677888899999
Q ss_pred ChhHHHHHHHHhhhCC-----CCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCC---------------ChhHHHHH
Q 009025 312 RTDDVVRALNRLPELG-----ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS---------------KLGYVVKL 370 (546)
Q Consensus 312 ~~~~A~~~~~~m~~~~-----~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~---------------~~~~~~~~ 370 (546)
+.++|..+|.++.... ..++......|.-++...++ ++|..+++.+.+..| +.......
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 9999999999886532 12233445778888888998 999999988887433 23334455
Q ss_pred HHHhhhhhcchHHHHHHHHHhccc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 371 LLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 371 L~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
++..+.-.| .+.+|++.++++.. +.|...+..+.+.+...|.+.+|.+.++.+... .|+.
T Consensus 422 ~a~~~~~~g-dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 422 LVQSLVALN-DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 666666667 45999999988753 346678889999999999999999999777655 3653
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=5.5e-12 Score=118.27 Aligned_cols=305 Identities=18% Similarity=0.213 Sum_probs=222.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+..+|.+||.++++--..++|.++|++..+...+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 788999999999999999999999999988877899999999998754332 3889999999999999999999999
Q ss_pred HHHhcCChHHH----HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC----C---CCCCCHHHHHH
Q 009025 200 AYGRARYGEDT----LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE-AFEIFEDMKSS----E---NCQPDSWTFSS 267 (546)
Q Consensus 200 ~~~~~g~~~~A----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----~---~~~~~~~~~~~ 267 (546)
+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... . ..+.|..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999988755 5678899999999999999999999999888744 55555555432 1 11335566778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009025 268 MITICSCRGKVSEAEAMFNEMLEA----GFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 340 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~~----~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 340 (546)
.+..|.+..+.+.|.++..-+... -+.|+ ..-|..+....++....+.-+..|+.|+-.-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 888999999999999987766532 12233 23466778888999999999999999997767889999999999
Q ss_pred HHhcCCH-HHHHHHHHHHHHcCCChhHHH-HHHHHhhhhhc-c------------hHHHHHHHHHh-------ccc-Ccc
Q 009025 341 VMTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEG-D------------FKKEATELFNS-------ISK-DVK 397 (546)
Q Consensus 341 ~~~~~g~-~~a~~~~~~~~~~~~~~~~~~-~~L~~~~~~~g-~------------~~~~A~~~~~~-------~~~-~~~ 397 (546)
+..-.+. +-.-+++..+...+......+ .-+...+++.. + ..+-|..+++. +.. +-.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~ 521 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP 521 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC
Confidence 8888877 555556555554443222211 11111111110 0 00111112211 111 123
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
....+..+-.+.+.|..++|.++|....+.+
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 3466777788899999999999999987555
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.59 E-value=2e-11 Score=130.59 Aligned_cols=332 Identities=12% Similarity=0.076 Sum_probs=249.0
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
..+...|++++|+++|+.+.+.... ++..+..++..|.+.++.++|++.++.+... .|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 3555779999999999999887544 5777778888889999999999999998876 566666655555555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------------------------------------
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR-------------------------------------- 215 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~-------------------------------------- 215 (546)
+|++.++++.+.. +-+...+..++.++.+.|-...|.++..
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6999999998864 2356666777777776665444443332
Q ss_pred ----------HHHHc-CCCcCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 216 ----------EMKEK-GMQLSV-----TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 216 ----------~m~~~-g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
.+... +..|.. .+.--.+.++...|++.++++.|+.+...+. +....+-..+.++|...++.+
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhcCCcH
Confidence 22221 111211 1222345677889999999999999998885 445567889999999999999
Q ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-----------CCCH---HHHHHHHH
Q 009025 280 EAEAMFNEMLEAG-----FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-----------TPDD---RFCGCLLN 340 (546)
Q Consensus 280 ~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~t~~~ll~ 340 (546)
+|..+|..+.... ..++......|.-+|...+++++|..+++++.+... .||+ ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999997643 122444467899999999999999999999987311 2332 23455677
Q ss_pred HHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHH
Q 009025 341 VMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENA 417 (546)
Q Consensus 341 ~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A 417 (546)
.+...|+ .+|.+.++.+....|....+...++..+...| ...+|++.++.... .| +..+...++.++...|++++|
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg-~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARD-LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 7788898 99999999999999999999999999999888 67999999977543 33 455777888899999999999
Q ss_pred HHHHHHHHhcccccCc
Q 009025 418 CKLLELGLTLEVYTDI 433 (546)
Q Consensus 418 ~~~~~~m~~~g~~p~~ 433 (546)
..+.+...+.- |+.
T Consensus 504 ~~~~~~l~~~~--Pe~ 517 (822)
T PRK14574 504 ELLTDDVISRS--PED 517 (822)
T ss_pred HHHHHHHHhhC--CCc
Confidence 99998887654 663
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.59 E-value=3.5e-11 Score=131.42 Aligned_cols=323 Identities=10% Similarity=0.035 Sum_probs=243.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC---h
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKR---P 172 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~---~ 172 (546)
..+...++.+.++.|-+.. .-+....-.+--...+.|+.++|..+|+..... ...++....+-++..+.+.+. .
T Consensus 354 ~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred ccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 4466667777777776652 226666666677778899999999999988762 123345555567777777665 2
Q ss_pred hHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 009025 173 WQVKTI----------------------YKEMTDN-GL-SP--NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226 (546)
Q Consensus 173 ~~a~~~----------------------~~~m~~~-g~-~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 226 (546)
..+..+ .+..... +. ++ +...|..+..++.. ++.++|+..+.+.... .|+.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~ 509 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDA 509 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCch
Confidence 223222 2222211 11 23 57788888888877 8999999988888776 3565
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
.....+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...|++..+.+.. +...+..+...
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~ 585 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQ 585 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH
Confidence 44444555567899999999999998664 455566778888999999999999999999886522 33333344445
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 385 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A 385 (546)
+...|++++|...|++..+ +.|+...+..+..++.+.|+ ++|...++.....+|+...+...++..+...|+ .++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHH
Confidence 5566999999999999987 45788889999999999999 999999999999999999999999999999895 5999
Q ss_pred HHHHHhcc-cCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 386 TELFNSIS-KDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 386 ~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
++.+++.. ..| +...+..+..++...|++++|+..|++.++.. |+.
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~ 710 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQ 710 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCC
Confidence 99998754 334 46689999999999999999999999998765 664
No 25
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=8.2e-12 Score=125.97 Aligned_cols=295 Identities=11% Similarity=-0.007 Sum_probs=217.7
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 124 FSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 124 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
+..+..+.. ..|+++.|.+.+.+..+. .|+.. .+-....+..+.|+.+.|.+.+.+..+....++....-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 344444443 569999999999888776 35543 4445567788889999999999998775322222344445788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH-HHHH---HHhcC
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS-MITI---CSCRG 276 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-li~~---~~~~g 276 (546)
+...|+++.|...++.+.+.... +...+..+...+.+.|++++|.+++..+.+.+. .+...+.. -..+ ....+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999988633 678888999999999999999999999998874 34333321 1111 13333
Q ss_pred CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH-HHHHHHHh--cCCH-HH
Q 009025 277 KVSEAEAMFNEMLEAGF---EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC-GCLLNVMT--QTPK-EE 349 (546)
Q Consensus 277 ~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~--~~g~-~~ 349 (546)
..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+. .||.... ..++..+. ..++ +.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHH
Confidence 33334445555554322 137888999999999999999999999999975 3554321 01222222 2344 88
Q ss_pred HHHHHHHHHHcCCChh--HHHHHHHHhhhhhcchHHHHHHHHH---hcccCccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 350 LGKLVECVEKSNSKLG--YVVKLLLEEQDIEGDFKKEATELFN---SISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~--~~~~~L~~~~~~~g~~~~~A~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
+.+.++...+..|+.. .+...++..+.+.|+ .++|.+.|+ .....|+...+..+...+.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8889999999999988 788999999999995 599999999 3445778778889999999999999999999986
Q ss_pred Hh
Q 009025 425 LT 426 (546)
Q Consensus 425 ~~ 426 (546)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 53
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=2.1e-11 Score=114.43 Aligned_cols=331 Identities=17% Similarity=0.259 Sum_probs=242.2
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 172 (546)
+..+|+--..+.|.+++++......+.+..+||.+|.+-.-.. -.+++.+|....+.||..|+|+++.+.++.|++
T Consensus 214 I~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F 289 (625)
T KOG4422|consen 214 IAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKF 289 (625)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcch
Confidence 3445577889999999999999888999999999997755432 278999999999999999999999999999988
Q ss_pred hH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCC----cCHHHHHHHHHHHHhc
Q 009025 173 WQ----VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED-TLSVYREMKE----KGMQ----LSVTLYNTLLAMCADV 239 (546)
Q Consensus 173 ~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~----~g~~----~~~~~~~~li~~~~~~ 239 (546)
+. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++ -|...|...+..|.+.
T Consensus 290 ~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l 369 (625)
T KOG4422|consen 290 EDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSL 369 (625)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHh
Confidence 66 56789999999999999999999999999888754 4444444432 2222 2556778888899999
Q ss_pred CCHHHHHHHHHHHHhCCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009025 240 GYTDEAFEIFEDMKSSEN---CQPD---SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 313 (546)
.+.+-|.++..-+..... +.|+ ..-|..+....+.....+.-...|+.|.-.-+-|+..+...++.+..-.|++
T Consensus 370 ~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~ 449 (625)
T KOG4422|consen 370 RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRL 449 (625)
T ss_pred hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcc
Confidence 999999988877654321 1233 2345677888889999999999999999887788999999999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-------HHHH--------HHHHHHH------HcCCChhHHHHHHH
Q 009025 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-------EELG--------KLVECVE------KSNSKLGYVVKLLL 372 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-------~~a~--------~~~~~~~------~~~~~~~~~~~~L~ 372 (546)
+-.-+++.+++..|-.-+.....-++..+++... ++.- .+++..+ +...-....++.++
T Consensus 450 e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia 529 (625)
T KOG4422|consen 450 EVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIA 529 (625)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHH
Confidence 9999999999888755555555555555554331 1111 1111110 01112233445555
Q ss_pred HhhhhhcchHHHHHHHHHhcccC----ccchhhH---HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 373 EEQDIEGDFKKEATELFNSISKD----VKKAYCN---CLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 373 ~~~~~~g~~~~~A~~~~~~~~~~----~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
..+.+.| ..++|.++|.-+... |-....| -|++.-.+.+....|..+++.|...+
T Consensus 530 ~Ll~R~G-~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 530 ILLLRAG-RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHcc-hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 5556667 559999998877432 2233455 45556678888999999999986554
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.57 E-value=2.8e-11 Score=132.22 Aligned_cols=319 Identities=10% Similarity=0.035 Sum_probs=246.5
Q ss_pred hcCCHHHHHHHHHHHHhC--CCccCHHHHHHHHHHHHHcCC---hHHHHHH----------------------HHHHHHC
Q 009025 98 RAGNVEMAFGLYDRARNE--KWRIDPNAFSTLIKLYGTAGN---FDGCLNV----------------------YEEMKAI 150 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~--g~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~ 150 (546)
+.|+.++|.++|+..... ...++.....-|+..|.+.+. ..++..+ ++.....
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 789999999999998772 234456666688888888876 3334333 1111111
Q ss_pred -CC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 009025 151 -GV-KP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 226 (546)
Q Consensus 151 -g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 226 (546)
+. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|+..|+++... .|+.
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~ 542 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSN 542 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc
Confidence 11 33 56788888888776 8888999988887765 366555445555667899999999999998665 3455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|...|++..+. .|+...|..+..+
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~ 618 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATI 618 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 567777888999999999999999998865 444444445555556679999999999999975 4678889999999
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~ 384 (546)
+.+.|++++|+..|++..+. .|+ ...+..+..++...|+ ++|...++...+..|+...+...++.++...|+ .++
T Consensus 619 l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-~~e 695 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-MAA 695 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHH
Confidence 99999999999999999974 455 4567777788999999 999999999999999999999999999999995 599
Q ss_pred HHHHHHhcc-cCcc-chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 385 ATELFNSIS-KDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 385 A~~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
|+..|++.. ..|+ ..+.........+..++++|.+-+++.....
T Consensus 696 A~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 696 TQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999998864 3443 3466677777888888999998888776544
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=2.8e-14 Score=136.74 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+..++..+.+.++++++.++++.+......+.+...|..+...+.+.|+.++|.+++++..+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333334444444444444444332221122333333333444444444444444444333
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=5e-11 Score=119.62 Aligned_cols=283 Identities=11% Similarity=0.055 Sum_probs=217.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA--SLLRAYGRARYGEDT 210 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A 210 (546)
.|+++.|.+.+....+.. ++... |.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 599999998888766542 23333 333344458899999999999999874 45543333 346788999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHHhcCCHHHHHHH
Q 009025 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS------WTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 211 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~ 284 (546)
.+.++++.+.... +...+..+...|.+.|++++|.+++..+.+.+...+.. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999887643 67888999999999999999999999999887522221 2344445544555566667777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC
Q 009025 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363 (546)
Q Consensus 285 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~ 363 (546)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .||.... ++.+....++ +++.+..+...+..|+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7666432 2347888899999999999999999999999874 4555322 2233334466 8999999999999999
Q ss_pred hhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 364 LGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 364 ~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
.......+++.+...++ .++|.+.|+... ..|+...|..|..++.+.|+.++|.+++++....
T Consensus 327 ~~~l~l~lgrl~~~~~~-~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGE-WQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99988999999999885 599999999865 4588888889999999999999999999987643
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=8.1e-14 Score=133.50 Aligned_cols=260 Identities=16% Similarity=0.193 Sum_probs=113.9
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCC-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
.....+.+.|++++|+++++...... ..-|...|..+...+...++++.|+..++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 33455558999999999997655443 233666677777777888999999999999988753 356677777777 789
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEI 248 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~ 248 (546)
+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876643 466778889999999999999999999987542 345788899999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009025 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328 (546)
Q Consensus 249 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 328 (546)
+++..+.. +-|......++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|+..|++..+..
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 99999875 4568889999999999999999999998887654 3456678899999999999999999999988742
Q ss_pred CCCHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 009025 329 TPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358 (546)
Q Consensus 329 ~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~ 358 (546)
+.|..+...+..++.+.|. ++|.++.+.+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3367788899999999999 88888776643
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=6.2e-11 Score=118.98 Aligned_cols=280 Identities=10% Similarity=0.004 Sum_probs=215.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTL-IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN--NLLDTMGRAKRPWQ 174 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~ 174 (546)
-.|+++.|.+.+....+.. .++..+..+ ..+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 5799999999888876642 233444333 44558899999999999999875 56654443 33567889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV-------TLYNTLLAMCADVGYTDEAFE 247 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~ 247 (546)
|.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999875 346788999999999999999999999999987654222 244555655556667778888
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009025 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 327 (546)
+++.+.+.- +.+......+...+...|+.++|.+++++..+. .++... .++.+....++.+++++..+...+.
T Consensus 251 ~w~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 251 WWKNQSRKT--RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HHHhCCHHH--hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-
Confidence 888876543 568888899999999999999999999998874 344422 2334444569999999999999875
Q ss_pred CCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 328 ITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 328 ~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
.|+. ..+..+...|.+.++ ++|.+.|+.+.+..|+.... ..|+..+.+.|+ .++|.+++++-
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~-~~~A~~~~~~~ 387 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHK-PEEAAAMRRDG 387 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCC-HHHHHHHHHHH
Confidence 3544 567788899999999 99999999999999987653 467788888884 59999988764
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.5e-11 Score=121.91 Aligned_cols=281 Identities=13% Similarity=0.045 Sum_probs=210.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 136 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
+..+|+.+|+...+. +.-+......+..+|...+++++|+++|+.+.+... .-+..+|.+.+-.+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 467899999886554 233446667788889999999999999999987521 12667888877655332 22222
Q ss_pred H-HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009025 214 Y-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 214 ~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 292 (546)
+ +.+.+.. +-...+|-++..+|.-.++.+.|++.|++....+ +-...+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2 2333322 2357899999999999999999999999998865 45888999999999999999999999998886
Q ss_pred CCCCHHHHHH---HHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH
Q 009025 293 FEPNLFVLTS---LIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 367 (546)
Q Consensus 293 ~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~ 367 (546)
.|...||+ +.-.|.+.++++.|.-.|+...+ |.| +.+....+...+.+.|. ++|..+++++...+|.....
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 45555554 56678999999999999998887 445 44667777778888888 99999999999988887665
Q ss_pred HHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccc
Q 009025 368 VKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 431 (546)
Q Consensus 368 ~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 431 (546)
..--+..+...+ ..++|+..+++++. .| +..++-.+...|.+.|+.+.|+.-|.-|.+.+-++
T Consensus 560 ~~~~~~il~~~~-~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 560 KYHRASILFSLG-RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHhhc-chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 444444444446 44899999988865 23 45688889999999999999999998887766433
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.7e-10 Score=104.78 Aligned_cols=286 Identities=14% Similarity=0.089 Sum_probs=121.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 009025 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLS 212 (546)
Q Consensus 136 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~A~~ 212 (546)
+.++|.++|-+|.+.. +-+..+.-+|.+.|-+.|..|.|+++++.+.++.--+. ....-.|..=|...|-+|.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444444444444421 12223333444444444444444444444443210000 1122233344444444444444
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 213 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+. .+. ..-|..|...+....+++.|..++.+.
T Consensus 129 ~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 129 IFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4444444321 1223344444444444444444444444444332 221 112334444444444444455544444
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh--
Q 009025 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-- 365 (546)
Q Consensus 289 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~-- 365 (546)
.+.+.+ .+..--.+.+.+...|+++.|++.++...+.+..--..+...|..+|.+.|+ ++....+..+.+..+...
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 443211 1222222333444445555555555544444333233344444445555554 444444433333222221
Q ss_pred HHHHHHHHhhhhhcchHHHHHHH-HHhcccCccchhhHHHHHHHHh---cCCHHHHHHHHHHHHhccc
Q 009025 366 YVVKLLLEEQDIEGDFKKEATEL-FNSISKDVKKAYCNCLIDLCVN---LNLLENACKLLELGLTLEV 429 (546)
Q Consensus 366 ~~~~~L~~~~~~~g~~~~~A~~~-~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~ 429 (546)
.++.-++. ...| . ++|... .+.+...|+...+..||+.... .|...+-+.+++.|...-+
T Consensus 286 l~l~~lie--~~~G-~-~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 286 LMLADLIE--LQEG-I-DAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHH--HhhC-h-HHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 12211111 1223 2 444433 3445666776666677776543 3445666777777765444
No 34
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=6.9e-10 Score=104.04 Aligned_cols=301 Identities=10% Similarity=0.023 Sum_probs=238.6
Q ss_pred HHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 126 TLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203 (546)
Q Consensus 126 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 203 (546)
.+..+..+ .|+|..|.++..+-.+.+-. ....|..-..+.-+.||.+.+-.++.+..+.--.++...+-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34455544 58999999999998887633 3445666677788899999999999999886445677778888888999
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHhcCC
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD------SWTFSSMITICSCRGK 277 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~~li~~~~~~g~ 277 (546)
.|+++.|..-++++.+.+.. +.........+|.+.|++.....++..+.+.+..... ..+|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999998887644 6788899999999999999999999999998852221 3467777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
.+.-...++..... .+-+...-..++.-+.+.|+.++|.++..+..+.+..|.. ..++ .+.+.++ ..-.+..+.
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~-~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLI-PRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHH-hhcCCCCchHHHHHHHH
Confidence 77766677665532 3345667778888999999999999999999988777762 2222 3445555 888888888
Q ss_pred HHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCcc
Q 009025 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 434 (546)
Q Consensus 357 ~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 434 (546)
-.+..|+....+..||..|.+.+ ...+|.+.|+.. ...++...|+-+.+++.+.|+..+|.++.++.+..-..|+.+
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~ 397 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNK-LWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLP 397 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888899999999998 459999999864 567888999999999999999999999999988666666654
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.4e-11 Score=122.24 Aligned_cols=279 Identities=13% Similarity=0.104 Sum_probs=184.6
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTI 178 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 178 (546)
+..+|...|..++.+ +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+.-+-+. .++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 566777777775554 22244566677788888888888888888877652 112566777777654322 12222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 179 Y-KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 179 ~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
+ +.+.+. -+-...+|-++.++|.-+++.+.|++.|++..+.+.. ..++|+.+..-+....++|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 222222 1234678888888888888888888888887776322 56778888777888888888888888776432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 337 (546)
+.+-..|--|...|.+.++++.|+-.|++..+-+.. +.+....+...+-+.|+.|+|+.+|++....+.+ |...-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 233344555677788888888888888887775443 5566666677777788888888888887754322 3333333
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh
Q 009025 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 391 (546)
Q Consensus 338 ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~ 391 (546)
-...+...++ ++|...++++.+.-|+...++.+++..|-+.|+. +.|+.-|.-
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~-~~Al~~f~~ 616 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT-DLALLHFSW 616 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc-hHHHHhhHH
Confidence 3444555556 8888888888888888888888888888777743 666655543
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=3.4e-10 Score=102.92 Aligned_cols=276 Identities=17% Similarity=0.170 Sum_probs=212.1
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM------ITYNNLLD 164 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~ 164 (546)
+.+.++ -..+.++|.++|-+|.+.... +..+.-+|.+.|-+.|..++|+.+.+.+.+. ||. ...-.|..
T Consensus 41 ~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 41 KGLNFL-LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGR 115 (389)
T ss_pred hHHHHH-hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHH
Confidence 444444 567889999999999986322 5556678899999999999999999998874 442 23445666
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcC
Q 009025 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV----TLYNTLLAMCADVG 240 (546)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g 240 (546)
-|...|-+|.|+++|..+.+.|. .-......|+..|-...+|++|+++-+++...+..+.. ..|..+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 78889999999999999988653 34667888999999999999999999998887544332 34556666667788
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009025 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320 (546)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 320 (546)
+.+.|..++++....+ +..+..-..+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+
T Consensus 195 ~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999998876 55666666788899999999999999999998775555677889999999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHhhh
Q 009025 321 NRLPELGITPDDRFCGCLLNV-MTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 376 (546)
Q Consensus 321 ~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~ 376 (546)
.++.+....++... .+-.. ....|.+.|...+..-.+..|+...+..++.....
T Consensus 273 ~~~~~~~~g~~~~l--~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 273 RRAMETNTGADAEL--MLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHccCCccHHH--HHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc
Confidence 99987544444432 22221 13455578888888888888988877666654443
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.45 E-value=6.4e-10 Score=113.99 Aligned_cols=323 Identities=15% Similarity=0.124 Sum_probs=248.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
-.|++++|..++.++.+... .+...|.+|...|-+.|+.+++...+-.+.... +-|...|..+.....+.|.+++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 45999999999999998754 488899999999999999999998776655543 4577899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL----YNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
.|.+.++.. +++...+---...|-+.|+...|...|.++.....+-|..- --.++..+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999974 34666666678899999999999999999998754323322 2334566777788899999999888
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHHHHHHH
Q 009025 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP---------------------------NLFVLTSLIQC 306 (546)
Q Consensus 254 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---------------------------~~~~~~~li~~ 306 (546)
..+.-..+...++.++..|.+...++.|......+......+ +..+ -.+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 743335677788999999999999999999988887622222 2222 123334
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh-HHHHHHHHhhhhhcchH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITP--DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-YVVKLLLEEQDIEGDFK 382 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~-~~~~~L~~~~~~~g~~~ 382 (546)
+.+....+....+.....+..+.| +...|.-+..++...|. .+|..++..+....+... .++-.++++|...| ..
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~-e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG-EY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh-hH
Confidence 445555555555555555555444 44678999999999999 999999999887655444 35588899999888 45
Q ss_pred HHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 383 KEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 383 ~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
++|.+.++.... .| +..+--+|...+.+.|+.++|.+++..+.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999988643 34 34456678888999999999999999876
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.7e-10 Score=109.00 Aligned_cols=185 Identities=14% Similarity=0.089 Sum_probs=140.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
.+|++++|.+.|++....+ ..-....-.+.-.+-..|++++|++.|-++..- +.-+..+...+...|-...+...|+
T Consensus 502 ~ngd~dka~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHHHHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 3678889999999888654 222333334444577889999999999876542 1236777778888888888999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cC
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KD 395 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~ 395 (546)
+++.+.... +.-|+.+...|...|-+.|+ .+|.+.+-.-.+--|..-..+..|+.-|.... +.++|+.+|++.. ..
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq-f~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ-FSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH-HHHHHHHHHHHHHhcC
Confidence 998776653 44467788899999999999 88888776666666777777788887777666 7799999998865 47
Q ss_pred ccchhhHHHHHHHH-hcCCHHHHHHHHHHHHhc
Q 009025 396 VKKAYCNCLIDLCV-NLNLLENACKLLELGLTL 427 (546)
Q Consensus 396 ~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 427 (546)
|+..-|-.||..|. +.|++.+|+++++...+.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 88999999987764 789999999999987543
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=1.9e-10 Score=116.14 Aligned_cols=288 Identities=10% Similarity=0.028 Sum_probs=205.6
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM--ITYNNLLDTMGRAKR 171 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~ 171 (546)
.....|+++.|.+.+....+. .|+.. .+-....++.+.|+++.|.+.|++..+.. |+. ...-.....+...|+
T Consensus 93 la~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCC
Confidence 334899999999999888776 34433 34455677888899999999999987653 444 344445778889999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH-HHHHHH---HhcCCHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN-TLLAMC---ADVGYTDEAFE 247 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~A~~ 247 (546)
++.|.+.++.+.+.. +-+..+...+...|.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+
T Consensus 169 ~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 169 LHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999875 336778889999999999999999999999988654 333332 111111 22333333334
Q ss_pred HHHHHHhCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 248 IFEDMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV-LTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 248 ~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
.+..+..... .+.+...+..+...+...|+.++|.+++++..+......... .....-.....++.+.+.+.++...
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 4444443320 024788899999999999999999999999988543322111 1222222344577888998888887
Q ss_pred hCCCCCCH---HHHHHHHHHHhcCCH-HHHHHHHH--HHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 325 ELGITPDD---RFCGCLLNVMTQTPK-EELGKLVE--CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 325 ~~~~~p~~---~t~~~ll~~~~~~g~-~~a~~~~~--~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
+. .|+. ....++...+.+.|+ ++|.+.|+ ...+..|+.... ..++..+.+.|+ .++|.+++++.
T Consensus 327 k~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~-~~~A~~~~~~~ 396 (409)
T TIGR00540 327 KN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGD-KAEAAAMRQDS 396 (409)
T ss_pred Hh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCC-HHHHHHHHHHH
Confidence 63 4544 455688888999999 99999999 566677877664 488888888885 59999998873
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.8e-10 Score=105.62 Aligned_cols=223 Identities=14% Similarity=0.172 Sum_probs=110.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHH---------
Q 009025 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNTYASL--------- 197 (546)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~l--------- 197 (546)
.+|-.....++++.-.+.....|++-+...-+....+.....|+++|+.+|+++.+...- -|..+|..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444455556655555555555444433333344444555666666666666554210 134444444
Q ss_pred ----------------------HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 198 ----------------------LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 198 ----------------------l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
.+-|+-.++.++|..+|++..+.+.. ....|+.|..-|....+...|++-++..++.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 33344444555555555555544322 3444555555555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 009025 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335 (546)
Q Consensus 256 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 335 (546)
. +.|-..|-.|..+|.-.+...-|+-.|++...... -|...|.+|.++|.+.++.++|++.|.+....| ..+...+
T Consensus 394 ~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 394 N--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred C--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 3 44555555555555555555555555555544221 134555555555555555555555555555433 1133444
Q ss_pred HHHHHHHhcCCH-HHHHHHHHH
Q 009025 336 GCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 336 ~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
..|.+.+-+.++ .+|.+.+++
T Consensus 470 ~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555554 444444443
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.1e-09 Score=113.15 Aligned_cols=329 Identities=15% Similarity=0.104 Sum_probs=204.7
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---- 170 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---- 170 (546)
.+...|++++|...|.+..+....--+..+--|...|.+.|+++.+...|+...+.. +-+..+..+|...|+..+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhH
Confidence 344778888888888777765322113344456777888888888888888877652 223445555555555553
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK----EKGMQLSVTLYNTLLAMCADVGYTDEAF 246 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~ 246 (546)
..+.|..++.+..+.- ..|...|-.+..+|-...-+ .++.+|.... ..+..+.....|.+...+...|++++|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 3355555555554432 23455555555444333222 2244433222 2333344555555555555555555555
Q ss_pred HHHHHHHhC---CCCCCCH----------------------------------------HHHHHHHHHHHhcCCHHHHHH
Q 009025 247 EIFEDMKSS---ENCQPDS----------------------------------------WTFSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 247 ~~~~~m~~~---~~~~~~~----------------------------------------~~~~~li~~~~~~g~~~~A~~ 283 (546)
..|+..... .. .+|. ..|.-++.+....+...+|..
T Consensus 473 ~~f~~A~~~~~~~~-n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVA-NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHhhhhhhhc-CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHH
Confidence 555554433 00 1222 222223222223345666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHhcC------------CH-HH
Q 009025 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDRFCGCLLNVMTQT------------PK-EE 349 (546)
Q Consensus 284 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~------------g~-~~ 349 (546)
.++.....+ ..+...+..+...+.+...+..|.+-|....+. ...+|......|.+.|.+. +. +.
T Consensus 552 ~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 552 LLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 666666432 235555666666777777788887766666532 2346777777777766532 22 78
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCc--cchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 350 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV--KKAYCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
|.++|.++.+.+|.+..+.+-++..++.+| .+.+|..+|..+.+.. ...+|-.+..+|..+|++-.|++.|+...+.
T Consensus 631 Alq~y~kvL~~dpkN~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 631 ALQLYGKVLRNDPKNMYAANGIGIVLAEKG-RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHhcCcchhhhccchhhhhhhcc-CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999988899999999999 5699999999987632 4568999999999999999999999998765
Q ss_pred cc
Q 009025 428 EV 429 (546)
Q Consensus 428 g~ 429 (546)
-.
T Consensus 710 f~ 711 (1018)
T KOG2002|consen 710 FY 711 (1018)
T ss_pred hc
Confidence 44
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=3.4e-10 Score=102.90 Aligned_cols=237 Identities=14% Similarity=0.103 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009025 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236 (546)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 236 (546)
.--+.+..+|.+.|.+.+|.+.|+.-++. .|-..||-.|-+.|.+..+.+.|+.+|.+-.+. ++.|+....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467888899999999999998888775 466778888889999999999999999888775 333555555677888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316 (546)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 316 (546)
-..++.++|.++++...+.. +.++....++...|.-.++.+-|+.+|+++++.|+. +...|+.+.-+|.-.+++|-+
T Consensus 301 eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 88899999999999988875 567777777888888889999999999999998876 888888888888888999988
Q ss_pred HHHHHHhhhCCCCCCH--HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc
Q 009025 317 VRALNRLPELGITPDD--RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393 (546)
Q Consensus 317 ~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~ 393 (546)
+..|.+....-..|+. .+|..+.......|+ .-|.+.|+-....+++.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h----------------------------- 428 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH----------------------------- 428 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-----------------------------
Confidence 8888887754334443 234444444444444 33333333333333322
Q ss_pred cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCcc
Q 009025 394 KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 434 (546)
Q Consensus 394 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 434 (546)
...+|.|.-.-.+.|+.++|..+++.+... .|+++
T Consensus 429 ----~ealnNLavL~~r~G~i~~Arsll~~A~s~--~P~m~ 463 (478)
T KOG1129|consen 429 ----GEALNNLAVLAARSGDILGARSLLNAAKSV--MPDMA 463 (478)
T ss_pred ----HHHHHhHHHHHhhcCchHHHHHHHHHhhhh--Ccccc
Confidence 335666666667777777777777765443 36643
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=6.5e-10 Score=103.08 Aligned_cols=200 Identities=10% Similarity=0.036 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455566666677777777777777666543 2345566666666777777777777777666643 2244556666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
|...|++++|.+.+++...... ......+..+...+...|++++|.+.|++..... +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence 7777777777777777665321 1123455556666777777777777777766653 344556666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+|..++++..+. ...+...+..+...+...|+.++|..+++.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777776654 223455555666666677777777776666543
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=4.1e-09 Score=101.04 Aligned_cols=320 Identities=13% Similarity=0.118 Sum_probs=177.2
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCh
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRID-PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI-TYNNLLDTMGRAKRP 172 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~ 172 (546)
.+-++|.+++|++.|...+.. .|| +.-|.....+|...|+|+++.+---..++. .|+-+ .+.--..++-..|++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccH
Confidence 344999999999999999986 677 888899999999999999988877766664 34422 333333344444444
Q ss_pred hHH----------------------HHHHHHH---------HHCC--CCCCHHHHHHHHHHH------------------
Q 009025 173 WQV----------------------KTIYKEM---------TDNG--LSPNWNTYASLLRAY------------------ 201 (546)
Q Consensus 173 ~~a----------------------~~~~~~m---------~~~g--~~p~~~~~~~ll~~~------------------ 201 (546)
++| .+++.+. .+.+ +-|+.....+....+
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 333 2222211 1111 123322222221111
Q ss_pred ---------------------------------------------------------HhcCChHHHHHHHHHHHHcCCCc
Q 009025 202 ---------------------------------------------------------GRARYGEDTLSVYREMKEKGMQL 224 (546)
Q Consensus 202 ---------------------------------------------------------~~~g~~~~A~~~~~~m~~~g~~~ 224 (546)
.-+|+.-.|..-|+..+.....
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~- 358 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA- 358 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-
Confidence 1123333333333333333222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 304 (546)
+...|--+..+|....+.++..+.|.+..+.+ +-|..+|..-..++.-.+++++|..=|++.+..... +...|-.+-
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~ 435 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLC 435 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHH
Confidence 11224455555666666666666666666554 344455555555555566666666666666653321 344455555
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH-------HH-HHHHHhh
Q 009025 305 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY-------VV-KLLLEEQ 375 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~-------~~-~~L~~~~ 375 (546)
-+..+.++++++...|++.+++ +.--+..|+.....+...++ ++|.+.|+...+..|.... .+ ..++...
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 5555666777777777776653 33344566666677777766 7777777776666555221 11 2222211
Q ss_pred hhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 376 DIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 376 ~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
-+ + .+.+|..++++..+ +| ....|.+|...-.+.|+.++|+++|++..
T Consensus 515 wk-~-d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 515 WK-E-DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hh-h-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 2 34666666665432 33 23466677777777777777777777643
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.1e-09 Score=102.39 Aligned_cols=301 Identities=13% Similarity=0.011 Sum_probs=211.2
Q ss_pred CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----------------------------HHHHH
Q 009025 116 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN-----------------------------LLDTM 166 (546)
Q Consensus 116 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----------------------------ll~~~ 166 (546)
+..-|...+-.....+-+.|....|++.|......- +-.=..|.. +..++
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 445577666667777778888888888887765421 111111111 12233
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHH-
Q 009025 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLAMCADVGYTD- 243 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~- 243 (546)
-.....+++.+-.+.....|+.-+...-+-...+.-...++|+|+.+|+++.+...- -|..+|..++-.--...++.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 333455555555666666666544444444444555667777777777777665211 14566666553322211111
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
-|..+++ .+ +--..|...+.+-|.-.++.++|...|++.++.+.. ....|+.|..-|....+...|++.+++.
T Consensus 318 LA~~v~~----id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 318 LAQNVSN----ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHH----hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1111111 11 334456667788888899999999999999986543 4678999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccc--hh
Q 009025 324 PELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK--AY 400 (546)
Q Consensus 324 ~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~--~~ 400 (546)
++-. +-|...|-.|.++|.-.+. .=|.-+|++.....|....++..||.+|.+.+ .+++|++.|.....-.|+ ..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~-~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN-RLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc-cHHHHHHHHHHHHhccccchHH
Confidence 9842 3367899999999999998 88999999999999999999999999999998 669999999887654444 78
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 401 CNCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
+..|.+.|-+.++.++|...|++-++
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999998888654
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.34 E-value=1.7e-08 Score=100.06 Aligned_cols=327 Identities=15% Similarity=0.081 Sum_probs=247.6
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM----KAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
+++...++.|..+++..++. ++-+...|.+-...=-.+|+.+....++++- ...|+..+..-|-.=...|-..|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 34555666667777666654 3446666766666666667777766666543 344666666666666666777777
Q ss_pred hhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSP--NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
.--+..+....+..|+.- -..||..-.+.|.+.+.++-|..+|....+. ++-+...|...+..=-..|..++...+|
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 777777777666666542 2356777777788888888888888887765 2336677877777777788899999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (546)
++.... |+.....|......+-..|++..|..++....+.... +...|-.-+..-..+.+++.|..+|.+... ..
T Consensus 574 qkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 574 QKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 988876 3666777888888888899999999999999886654 678899999999999999999999998876 56
Q ss_pred CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh-cccCc-cchhhHHHHH
Q 009025 330 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS-ISKDV-KKAYCNCLID 406 (546)
Q Consensus 330 p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~-~~~~~-~~~~~~~li~ 406 (546)
|+...|..-++..--.+. ++|.++++...+.-|++..++-.+|..+...+ .++.|.+.|.. ...-| .+..|-.|..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME-NIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 777777766666666677 99999999999999999999999999988888 55888777655 33333 4568888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 407 LCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 407 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
.--+.|..-+|..+|++..-.+ |+
T Consensus 728 leEk~~~~~rAR~ildrarlkN--Pk 751 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN--PK 751 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC--CC
Confidence 8889999999999999887766 55
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=1.1e-09 Score=114.96 Aligned_cols=232 Identities=9% Similarity=-0.007 Sum_probs=163.8
Q ss_pred cCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGT-----AGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMG---------RAKRPWQVKTIYKEMT 183 (546)
Q Consensus 119 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~ 183 (546)
.+...|...+.+-.. .+++++|+++|++..+. .|+ ...|..+..++. ..+++++|...+++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 466666666655322 24588999999999876 344 445655555443 2244788999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009025 184 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263 (546)
Q Consensus 184 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 263 (546)
+... -+...+..+..++...|++++|+..|++..+.+.. +...+..+...+...|++++|+..+++..+.. +.+..
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 8642 36778888888888999999999999999887532 56778888889999999999999999998865 23333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH-HHHHHHHH
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF-CGCLLNVM 342 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~ 342 (546)
.+..++..+...|++++|...++++.+....-+...+..+..+|...|+.++|...+.++... .|+..+ .+.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 444455556778899999999998876532224555777888888999999999999887653 455444 34444455
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009025 343 TQTPKEELGKLVECVEK 359 (546)
Q Consensus 343 ~~~g~~~a~~~~~~~~~ 359 (546)
...| +.+...++.+.+
T Consensus 486 ~~~g-~~a~~~l~~ll~ 501 (553)
T PRK12370 486 CQNS-ERALPTIREFLE 501 (553)
T ss_pred hccH-HHHHHHHHHHHH
Confidence 5555 455555555544
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=1.1e-09 Score=114.98 Aligned_cols=262 Identities=12% Similarity=-0.053 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH---------hcCChHHHHHHHHHHH
Q 009025 154 PNMITYNNLLDTMGR-----AKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYG---------RARYGEDTLSVYREMK 218 (546)
Q Consensus 154 p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~---------~~g~~~~A~~~~~~m~ 218 (546)
.+...|...+.+... .++.++|..+|++.++. .| +...|..+..+|. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345566666665322 23467899999999875 34 3455655555543 2345789999999998
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009025 219 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 298 (546)
Q Consensus 219 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 298 (546)
+.+.. +...+..+...+...|++++|+..|++..+.+ +.+...+..+...+...|++++|...+++..+.+.. +..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 87543 67888888888999999999999999998875 566778888999999999999999999999886543 222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhh
Q 009025 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 376 (546)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~ 376 (546)
.+..++..+...|++++|+..++++.+.. .|+ ...+..+..++...|+ ++|...+..+....|......+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 33344555667899999999999987643 343 4456667778888898 99999999888887777777788887777
Q ss_pred hhcchHHHHHHHHHhcc----cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 377 IEGDFKKEATELFNSIS----KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 377 ~~g~~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
..| ++|...++.+. ..+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g---~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS---ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH---HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 45655555543 23333333 44556667777777666 7776654
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=1.8e-09 Score=100.09 Aligned_cols=201 Identities=11% Similarity=0.029 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 45677788888899999999999999888753 33567788888889999999999999998887643 35677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 314 (546)
.+...|++++|.+.|++.............+..+...+...|++++|...|++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 889999999999999998865321234556777888888999999999999988875432 4667788888888899999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 315 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
+|...+++..+. ...+...+..+...+...|+ +++..+.+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999888765 23344555556666666666 666666555443
No 50
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=9.1e-12 Score=84.37 Aligned_cols=49 Identities=39% Similarity=0.666 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 167 (546)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4566666666666666666666666666666666666666666666654
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.27 E-value=8.6e-08 Score=95.19 Aligned_cols=322 Identities=12% Similarity=0.053 Sum_probs=270.5
Q ss_pred hcCCHHHHHHHHHHHH----hCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 009025 98 RAGNVEMAFGLYDRAR----NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKR 171 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~ 171 (546)
++|+.+...++.++.. ..|+..+...|-.=...|-+.|..-.+..+....+..|+.-. ..||+.-...|.+.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 6788999888887754 468999999999999999999999999999999998887533 3588888999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (546)
++-|..+|...++- ++-+...|......--..|..+....+|++....- +-....|-.....+-..|++..|..++.+
T Consensus 532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999885 33466777777777777899999999999998863 34677888888889999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 009025 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331 (546)
Q Consensus 252 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 331 (546)
..+.. +-+...|..-++....+..+++|..+|.+.... .|+...|..-+..---.+..++|++++++.++. -|+
T Consensus 610 af~~~--pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~ 683 (913)
T KOG0495|consen 610 AFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD 683 (913)
T ss_pred HHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc
Confidence 99876 557889999999999999999999999998864 477788877777777789999999999998873 466
Q ss_pred H-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc--cCccchhhHHHHHH
Q 009025 332 D-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS--KDVKKAYCNCLIDL 407 (546)
Q Consensus 332 ~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~--~~~~~~~~~~li~~ 407 (546)
. ..|-.+...+-+.++ +.|...|..-.+.-|.....+-+|...--+.| .+-.|..++++.. .+.+...|-..|..
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-~~~rAR~ildrarlkNPk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-QLVRARSILDRARLKNPKNALLWLESIRM 762 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 5 467777788888888 88888888888888888888888887777777 5689999998754 34567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcc
Q 009025 408 CVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 408 ~~~~g~~~~A~~~~~~m~~~g 428 (546)
-.+.|+.+.|..+..++++.-
T Consensus 763 ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999888887654
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.27 E-value=5e-08 Score=101.16 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=45.7
Q ss_pred HHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccc-hhhHHHHHHH
Q 009025 383 KEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS-LGAALTALHI 459 (546)
Q Consensus 383 ~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~-~g~~~~a~~~ 459 (546)
++|+++|.+.-. .| |...=|-+.-.++..|++.+|..+|.+..+... + ....|-.+.|.+- .|....|+..
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~----~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--D----FEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--h----CCceeeeHHHHHHHHHHHHHHHHH
Confidence 445555544322 21 233345555666777777777777777766553 1 2334544444443 4777888877
Q ss_pred HHHHHHHHH
Q 009025 460 WINDLSKAL 468 (546)
Q Consensus 460 ~~~~~~~~~ 468 (546)
+...+++..
T Consensus 703 Ye~~lkkf~ 711 (1018)
T KOG2002|consen 703 YENCLKKFY 711 (1018)
T ss_pred HHHHHHHhc
Confidence 777776543
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.7e-11 Score=83.01 Aligned_cols=49 Identities=29% Similarity=0.544 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555544
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=8.2e-08 Score=90.35 Aligned_cols=282 Identities=12% Similarity=0.087 Sum_probs=223.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
-.|++.+|+++..+-.+.+-. ....|..-..+--+.|+.+.+-.++.+..+..-.++...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 679999999999998777533 4455666677788899999999999999886335677778888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV-------TLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
-++++.+.+. -+........++|.+.|++.....++..|.+.|.--|. .+|+.++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999998764 46788999999999999999999999999998876544 468888887777777777777888
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-CCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-LGIT 329 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~ 329 (546)
+....- +-+...-.+++.-+..+|+.++|.++..+..+++..|+.. ..-.+.+-++.+.-++..+.-.+ .+..
T Consensus 254 ~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 254 NQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred hccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 876653 5566777888899999999999999999999888776622 22345666777777777776654 3333
Q ss_pred CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh
Q 009025 330 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 391 (546)
Q Consensus 330 p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~ 391 (546)
| ..+..|...|.+.+. .+|...++...+..|+... +..++..+.+.|+ ..+|.+.+++
T Consensus 328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~-~~~A~~~r~e 386 (400)
T COG3071 328 P--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGE-PEEAEQVRRE 386 (400)
T ss_pred h--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCC-hHHHHHHHHH
Confidence 3 677888888889988 9999999988887776544 3777888888884 4777777665
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.25 E-value=6.3e-08 Score=99.74 Aligned_cols=328 Identities=12% Similarity=0.054 Sum_probs=244.0
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
..|-+.|++++++..+-.+-... +-|...|-.+.....+.|++++|.-.|.+.++.. +++...+---...|-+.|+..
T Consensus 181 ~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~ 258 (895)
T KOG2076|consen 181 EIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLK 258 (895)
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHH
Confidence 34458899999998776655544 3377999999999999999999999999999875 455555556778899999999
Q ss_pred HHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWN----TYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEI 248 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~ 248 (546)
.|..-|.++.....+.|.. ..-.+++.|...++-+.|.+.++.....+ -..+...++.++..|.+...++.|...
T Consensus 259 ~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 259 RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 9999999999864322322 23344666777788899999998877632 223556788999999999999999998
Q ss_pred HHHHHhCCCCCCCHHHH----------------------H----HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHH
Q 009025 249 FEDMKSSENCQPDSWTF----------------------S----SMITICSCRGKVSEAEAMFNEMLEAG--FEPNLFVL 300 (546)
Q Consensus 249 ~~~m~~~~~~~~~~~~~----------------------~----~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~ 300 (546)
..++..... .+|..-| . -+.-++......+....+.....+.. +.-+...|
T Consensus 339 i~~~~~r~~-e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~ 417 (895)
T KOG2076|consen 339 IVDDRNRES-EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLY 417 (895)
T ss_pred HHHHhcccc-CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHH
Confidence 888876221 2222222 1 12223333444444444555555555 33456778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc
Q 009025 301 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379 (546)
Q Consensus 301 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 379 (546)
.-+.++|.+.|++.+|+.+|..+......-+...|-.+..++...|. ++|.+.|+.+....|+...+.-.|...+.+.|
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence 99999999999999999999999976555567789999999999999 99999999999999999888888888888889
Q ss_pred chHHHHHHHHHhcccC-----------ccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 380 DFKKEATELFNSISKD-----------VKKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 380 ~~~~~A~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
+ .++|.+.++.+... ++...--...+.+.+.|+.++=..+...|+
T Consensus 498 ~-~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 498 N-HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred C-HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5 49999999986531 122234456677889999887655555554
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.3e-08 Score=92.96 Aligned_cols=298 Identities=15% Similarity=0.058 Sum_probs=221.5
Q ss_pred HHHHHHHHH--cCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 009025 125 STLIKLYGT--AGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-NTYASLLRA 200 (546)
Q Consensus 125 ~~li~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~ 200 (546)
...+.+++. .++...|...+-.+... -++-|+.....+.+.+...|+.++|+..|+..... .|+. .......-.
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH
Confidence 344555544 35555555554444332 34567778889999999999999999999998764 3332 222222334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (546)
+.+.|+.++...+...+.... +-+...|-.-........++..|+.+-++.++.+ +.+...|..-.+.+...|+.++
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHH
Confidence 467788888888887776542 1133334444444556788999999999998876 6677888888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH-HHHhc--CCHHHHHHHHHHH
Q 009025 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQ--TPKEELGKLVECV 357 (546)
Q Consensus 281 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~~--~g~~~a~~~~~~~ 357 (546)
|.-.|+....... -+...|.-|+.+|...|++.+|..+-+...+. +.-+..+...+. ..|.- .++++|.+++++.
T Consensus 353 A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 353 AVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 9999998876321 36789999999999999999999887776542 233444544442 33333 3449999999999
Q ss_pred HHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 358 ~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
.+.+|.+-..+..+++.+...| ..+++..++++. ...+|....+.|.+.+...+.+.+|++.|..++..+ |+
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg-~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d--P~ 503 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEG-PTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD--PK 503 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhC-ccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--cc
Confidence 9999999999999999888888 458999999875 456788999999999999999999999999988776 65
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.8e-08 Score=95.63 Aligned_cols=288 Identities=13% Similarity=0.098 Sum_probs=207.8
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHH-HHHHc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIK-LYGTA-GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~-~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
..-+.++|+++.|.+++.-..+..-+.-...-|.|-. -|.+. .++..|...-+...... .-|......-.+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 3445599999999999888776543333333333322 23333 36777877777666443 234444444444556679
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
++++|.+.|++.+...-.-....|| +.-.+-..|++++|+++|-++-.. +.-+..+...+...|....+...|++++-
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999998764322223333 233567789999999999876532 12267777888899999999999999998
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
+.... ++-|.....-|...|-+.|+-..|.+.+-+--. -+.-|..+...|...|....-+++++.+|++..- ++|
T Consensus 583 q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 583 QANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred Hhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 87654 367888999999999999999999888755443 3556888888999999999999999999998764 789
Q ss_pred CHHHHHHHHHHHh-cCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHH
Q 009025 331 DDRFCGCLLNVMT-QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 390 (546)
Q Consensus 331 ~~~t~~~ll~~~~-~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~ 390 (546)
+..-|..++..|. +.|+ ..|..+|+.+.+.-|.....+..|++.....| +.++.++-+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg--l~d~key~~ 717 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG--LKDAKEYAD 717 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc--chhHHHHHH
Confidence 9999998887776 5677 99999999998888887777777777776666 245544433
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=3.9e-07 Score=87.35 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH--HHHHHHH--------HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW--TFSSMIT--------ICSCRGKVSEAEAMFNEMLEAGFEPN 296 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~~li~--------~~~~~g~~~~A~~~~~~m~~~~~~p~ 296 (546)
.+|--.++.-...|+.+...++|++.+..- +|-.. -|...|- .-....+.+.+.++|+..++. ++..
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 344444555555566666666666665432 33111 1111111 112345666666666666552 2222
Q ss_pred HHHHHHHHHHH----HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHH
Q 009025 297 LFVLTSLIQCY----GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLL 371 (546)
Q Consensus 297 ~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L 371 (546)
.+||..+=-.| .+..++..|.+++...+ |.-|-..+|...|..-.+.+. +...++++..+.-+|.....+.-.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 34443332222 35566777777776655 567888888888888888888 999999999999999888887777
Q ss_pred HHhhhhhcchHHHHHHHHHhcccCcc----chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 372 LEEQDIEGDFKKEATELFNSISKDVK----KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 372 ~~~~~~~g~~~~~A~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+..-...|+ .+.|..+|+-...+|. ...|-+.|+.-...|.+++|..+++++++..
T Consensus 478 aElE~~Lgd-tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 478 AELETSLGD-TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHhhh-HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 666666674 4999999988766552 3478999999999999999999999987653
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.13 E-value=1.5e-09 Score=110.84 Aligned_cols=220 Identities=16% Similarity=0.165 Sum_probs=151.6
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 009025 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187 (546)
Q Consensus 108 l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 187 (546)
++-.+...|+.|+.+||..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++.+..++++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 5667778899999999999999999999999888 8888876665556666666666666666665554
Q ss_pred CCCHHHHHHHHHHHHhcCChHH---HHHHHHHHH----HcCC-----------------CcCHHHHHHHHHHHHhcCCHH
Q 009025 188 SPNWNTYASLLRAYGRARYGED---TLSVYREMK----EKGM-----------------QLSVTLYNTLLAMCADVGYTD 243 (546)
Q Consensus 188 ~p~~~~~~~ll~~~~~~g~~~~---A~~~~~~m~----~~g~-----------------~~~~~~~~~li~~~~~~g~~~ 243 (546)
.|-..+|+.|+.+|...||... +.+.+..+. ..|+ -||..+ .+.-....|.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHH
Confidence 4556666666666666666543 222111111 1111 112111 111111112222
Q ss_pred H------------------------------HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009025 244 E------------------------------AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 244 ~------------------------------A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 293 (546)
. .+++......... .|+..+|..++..-...|+++.|..++.+|++.|+
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 2 2222222222222 58999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009025 294 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 346 (546)
Q Consensus 294 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 346 (546)
..+.+-|..|+-+ .+...-+..+++-|.+.|+.|+..|+.-.+..+...|
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 9998888888866 7888889999999999999999999988887777644
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=7.8e-09 Score=94.25 Aligned_cols=235 Identities=11% Similarity=0.042 Sum_probs=195.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 204 (546)
+.|.++|.+.|-+.+|...|+.-.+. .|-+.||-.|-.+|.+..+++.|+.++.+-++. ++-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 57889999999999999999998876 688889999999999999999999999998875 333555555667888889
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 284 (546)
++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+++++...| .-+...|+.+.-.|.-.+++|-++--
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998764 3367777778888889999999999999999999 57788999999999999999999999
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 009025 285 FNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 361 (546)
Q Consensus 285 ~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~ 361 (546)
|++....--.|+ ...|-.+-......|++..|.+.|+-....+ .-+...++.|.-.-.+.|+ ++|..++.......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999886544444 4567778888889999999999999887643 2245678888777788888 88888888777766
Q ss_pred CChhH
Q 009025 362 SKLGY 366 (546)
Q Consensus 362 ~~~~~ 366 (546)
|+...
T Consensus 460 P~m~E 464 (478)
T KOG1129|consen 460 PDMAE 464 (478)
T ss_pred ccccc
Confidence 65443
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=5.6e-08 Score=97.76 Aligned_cols=234 Identities=20% Similarity=0.215 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEK-----GM-QLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSS-----ENC 258 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~ 258 (546)
..+...|..+|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677999999999999999999987654 21 22332 3344677889999999999999998642 211
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhh---CC
Q 009025 259 QP-DSWTFSSMITICSCRGKVSEAEAMFNEMLE---A--GF-EPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPE---LG 327 (546)
Q Consensus 259 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~ 327 (546)
.| -..+++.|..+|.+.|++++|...+++..+ . |. .|.+ ..++.++..|...+++++|..++++..+ .-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 345778888899999999999888887653 1 21 1222 2356777888999999999999987653 12
Q ss_pred CCCCH----HHHHHHHHHHhcCCH-HHHHHHHHHHHHc--------CCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-
Q 009025 328 ITPDD----RFCGCLLNVMTQTPK-EELGKLVECVEKS--------NSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS- 393 (546)
Q Consensus 328 ~~p~~----~t~~~ll~~~~~~g~-~~a~~~~~~~~~~--------~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~- 393 (546)
+.++. .+++.|...+.+.|+ .+|.+++++++.. .+..+..++.|+..|...+ ...+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k-~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK-KYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc-ccchHHHHHHHHHH
Confidence 23333 479999999999999 9999999887652 2333456788888886666 4477777776532
Q ss_pred ------c-Ccc-chhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 394 ------K-DVK-KAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 394 ------~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
. .|+ ..+|..|+..|.+.|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 223 3388999999999999999999998876
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=2.9e-07 Score=88.55 Aligned_cols=218 Identities=11% Similarity=-0.008 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHHHhCCC-cc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 100 GNVEMAFGLYDRARNEKW-RI--DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 100 g~~~~A~~l~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 176 (546)
+..+.++.-+.++..... .| ....|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888886421 22 24568888889999999999999999998875 346789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
..|++.++... -+..++..+..++...|++++|++.|+...+.... +. ........+...++.++|...|++.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999998532 25678888888999999999999999999886432 22 12222223445678999999997765432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009025 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG---F--EP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 327 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 327 (546)
.++...+ .+. ....|+...+ +.++.+.+.. . .| ....|..+...+.+.|++++|+..|++..+.+
T Consensus 196 --~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 --DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred --CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 222 2335555544 3555544311 1 11 23578888889999999999999999988743
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=5e-08 Score=98.11 Aligned_cols=236 Identities=16% Similarity=0.159 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC-C
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAI-----GV-KPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDN-----GLS-P 189 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-p 189 (546)
+...|...|...|+++.|..++++..+. |. .|...+ .+.+...|...+++++|..+|+++... |-. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445677777777777777777776543 21 233322 233555677777777777777777542 211 1
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC
Q 009025 190 -NWNTYASLLRAYGRARYGEDTLSVYREMKEK-----GM-QLSV-TLYNTLLAMCADVGYTDEAFEIFEDMKSSEN--CQ 259 (546)
Q Consensus 190 -~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~ 259 (546)
-..+++.|-.+|.+.|++++|..++++..+. |. .+.+ ..++.+...|+..+++++|..+++...+.-. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1345566666777777777777766655431 11 1111 2355566667777777777777765443210 01
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhh---
Q 009025 260 PD----SWTFSSMITICSCRGKVSEAEAMFNEMLEA----GF--EPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPE--- 325 (546)
Q Consensus 260 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 325 (546)
++ ..+++.|...|.+.|++++|.++|++.+.. +. .+. -..++.|...|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 346677777777777777777777776542 11 111 23456667777777777777777765432
Q ss_pred -CCC-CCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 009025 326 -LGI-TPDD-RFCGCLLNVMTQTPK-EELGKLVECVE 358 (546)
Q Consensus 326 -~~~-~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~ 358 (546)
.|. .|+. .+|..|...|...|+ +.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 1222 456677777777777 66666665554
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=3.1e-07 Score=80.30 Aligned_cols=201 Identities=13% Similarity=0.020 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 237 (546)
+..-|.-.|.+.|+...|.+-+++.++... -+..++..+...|.+.|+.+.|.+.|++....... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 344455566667777777777777666531 24456666666667777777777777766655322 4566666666667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
..|++++|...|++........--..+|..+.-+..+.|+.+.|.+.|++.++.... ...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 777777777777766654432233456666666666777777777777766664322 2345555666666667777777
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCC
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 362 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~ 362 (546)
..++.....+. ++....-..|..-...|+ +.+.++=..+.+.-|
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 66666665443 555555555555555666 444444444444444
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=6.7e-07 Score=91.15 Aligned_cols=286 Identities=16% Similarity=0.166 Sum_probs=186.7
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hc--
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRID-PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG-RA-- 169 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~-- 169 (546)
+.+...|++++|++.++.-... -+| ..........+.+.|+.++|..+|+.+++.+ |+...|-..+..+. -.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4456889999999999876554 345 4456677889999999999999999999985 66665555544443 22
Q ss_pred ---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009025 170 ---KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245 (546)
Q Consensus 170 ---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 245 (546)
.+.+...++|+++...- |.......+.-.+..-..+ ..+..++..+..+|++ .+++.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24677788888887642 3333333332222221222 2445566667777754 3456666666655555555
Q ss_pred HHHHHHHHhCC-------------CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 009025 246 FEIFEDMKSSE-------------NCQPDSW--TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGK 309 (546)
Q Consensus 246 ~~~~~~m~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 309 (546)
.+++....... .-+|... ++.-+...|-..|++++|++++++.++.. |+ +..|..-...|-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 56665544220 1135553 44556677778888888888888888753 54 6677788888888
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCC--Ch-----hHHH--HHHHHhhhhhc
Q 009025 310 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS--KL-----GYVV--KLLLEEQDIEG 379 (546)
Q Consensus 310 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~--~~-----~~~~--~~L~~~~~~~g 379 (546)
.|++++|.+.++.....+.. |...-+.....+.+.|. ++|.+.+....+.+. .. .++| .-.+.+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888765422 55666667777778888 888888877766441 11 1223 55577777777
Q ss_pred chHHHHHHHHHhc
Q 009025 380 DFKKEATELFNSI 392 (546)
Q Consensus 380 ~~~~~A~~~~~~~ 392 (546)
+ ...|+..|..+
T Consensus 320 ~-~~~ALk~~~~v 331 (517)
T PF12569_consen 320 D-YGLALKRFHAV 331 (517)
T ss_pred h-HHHHHHHHHHH
Confidence 4 46676665543
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7e-07 Score=87.66 Aligned_cols=268 Identities=10% Similarity=-0.022 Sum_probs=167.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009025 151 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 230 (546)
Q Consensus 151 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 230 (546)
+..-+........+-|...+++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=.+|.+.- +-...+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 334556666666666777777777777777777652 4455666666667777777777666666776652 22567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
++.--|...|++.+|.++|.+....+ +.-...|..+...|+-.|.-+.|...+...-+.-.. ....+--+.--|.+.
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRT 393 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHh
Confidence 77777777777777777777766544 334556777777777777777777777665542110 111122233346667
Q ss_pred CChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHH-------cCCChhHHHHHHHHhhhhhcch
Q 009025 311 QRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEK-------SNSKLGYVVKLLLEEQDIEGDF 381 (546)
Q Consensus 311 g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~-------~~~~~~~~~~~L~~~~~~~g~~ 381 (546)
+..+.|.+.|.+... +.|+ +...+-+.-.....+. .+|..+|+.... ..+.....++.||..|-+++ .
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~-~ 470 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN-K 470 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh-h
Confidence 777777777776654 4453 3444444444444555 777777666542 11123445677777777777 4
Q ss_pred HHHHHHHHHhcc--cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 382 KKEATELFNSIS--KDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 382 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
.++|+..++..- .+.+..++.++.-.|...|+++.|.+.|.+.+-
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 577777776643 233566777777777777777777777777643
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.97 E-value=4.5e-07 Score=87.22 Aligned_cols=221 Identities=12% Similarity=0.049 Sum_probs=105.9
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNG-LSPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 246 (546)
+..+.++.-+.+++... ..|+ ...|..+...|.+.|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555321 1111 233455555555566666666666555554322 4555555556666666666666
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
+.|++..+.. +-+..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 6666655543 3344555555555555566666666665555432 22211111111122344555555555443321
Q ss_pred CCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--CccchhhHH
Q 009025 327 GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNC 403 (546)
Q Consensus 327 ~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~~ 403 (546)
..|+...+ .+.. ...|+ .++ ..+.. +.+.++.-.. +.....|..
T Consensus 195 -~~~~~~~~-~~~~--~~lg~~~~~-~~~~~----------------------------~~~~~~~~~~l~~~~~ea~~~ 241 (296)
T PRK11189 195 -LDKEQWGW-NIVE--FYLGKISEE-TLMER----------------------------LKAGATDNTELAERLCETYFY 241 (296)
T ss_pred -CCccccHH-HHHH--HHccCCCHH-HHHHH----------------------------HHhcCCCcHHHHHHHHHHHHH
Confidence 11221111 1111 11111 100 01111 1111100000 012347889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 404 LIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 404 li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+...+.+.|++++|...|++.++.+
T Consensus 242 Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 242 LAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998766
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.97 E-value=2.3e-06 Score=87.21 Aligned_cols=286 Identities=16% Similarity=0.149 Sum_probs=197.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhc--
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA-SLLRAYGRA-- 204 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~-- 204 (546)
...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |+...|. .+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 44568889999999999875544 33344566777888999999999999999999975 4555554 444444222
Q ss_pred ---CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009025 205 ---RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 205 ---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (546)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+ | .+|+.|-..|....+.+-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv--P--slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV--P--SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC--c--hHHHHHHHHHcChhHHHH
Confidence 25677888999887653 3333332232222222223 345667777788774 4 356677777776666666
Q ss_pred HHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHh
Q 009025 281 AEAMFNEMLEA----G----------FEPNLF--VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMT 343 (546)
Q Consensus 281 A~~~~~~m~~~----~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~ 343 (546)
...++...... + -.|... ++..+...|...|++++|+++.++.++. .|+ ...|..-...+.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 66666665532 1 124443 4466678889999999999999999985 466 467888888999
Q ss_pred cCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCc-cch--------hh--HHHHHHHHhc
Q 009025 344 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV-KKA--------YC--NCLIDLCVNL 411 (546)
Q Consensus 344 ~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~-~~~--------~~--~~li~~~~~~ 411 (546)
+.|+ .+|...++.....+...-.+-+-.+..+.++| .+++|.+++..+.... +.. +| ..-..+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~-~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG-RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC-CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999998887765554455555556667 6799999988776533 111 33 4556789999
Q ss_pred CCHHHHHHHHHHHH
Q 009025 412 NLLENACKLLELGL 425 (546)
Q Consensus 412 g~~~~A~~~~~~m~ 425 (546)
|++..|++-|....
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999988777664
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3.1e-07 Score=88.42 Aligned_cols=219 Identities=16% Similarity=0.130 Sum_probs=175.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009025 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 246 (546)
.-.|+.-.+..-|+..+.....++ ..|.-+..+|....+.++..+.|++..+.+.. +..+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 446788889999999988654332 33778888999999999999999999887644 6677877778888889999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
.=|++.++.. +-+...|..+.-+..+.++++++...|++.+++ ++--...|+.....+...+++++|.+.|+..++.
T Consensus 415 aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999876 567888888888889999999999999999875 4446789999999999999999999999988763
Q ss_pred C-----CCCCHHH--HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 327 G-----ITPDDRF--CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 327 ~-----~~p~~~t--~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
. +..+... -..++. +.-.++ .+|..++.+..+.+|.....+..|+..-...| .+++|+++|++.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~-~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG-KIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 1 1112211 111111 112355 99999999999999999999999999888888 569999999874
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=1.6e-06 Score=75.99 Aligned_cols=186 Identities=14% Similarity=0.022 Sum_probs=80.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
+.|+...|..-+++.++.... +..+|..+...|-+.|..+.|.+-|++..... +-+..+.|....-+|..|++++|..
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHH
Confidence 445555555555555444221 33344444444555555555555555444432 1233344444444444445555555
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.|++....-.- --..+|..+.-+..+.|+.+.|.+.|++..+.... ...+.-.+.....+.|++..|..+++.....+
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 44444443110 11234444444444444444444444444443211 12333344444444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
.++..+.-..|+.-...|+-+.+.++=..+
T Consensus 204 --~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 204 --GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred --cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 244444444444444444444444433333
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.93 E-value=7.6e-06 Score=81.63 Aligned_cols=332 Identities=12% Similarity=0.152 Sum_probs=203.8
Q ss_pred chhhhcCCHHHHHHHHHHHHhC-CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009025 94 SYDTRAGNVEMAFGLYDRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 172 (546)
.++.++|++...+..|++.+.. .+.-....|...+......|-++-++.+|++.++. ++..-+-.|..++..+++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccch
Confidence 4445788888899999887764 22223346777787777888888888888887753 333456666777777777
Q ss_pred hHHHHHHHHHHHC----------------------------------------CC--CCC--HHHHHHHHHHHHhcCChH
Q 009025 173 WQVKTIYKEMTDN----------------------------------------GL--SPN--WNTYASLLRAYGRARYGE 208 (546)
Q Consensus 173 ~~a~~~~~~m~~~----------------------------------------g~--~p~--~~~~~~ll~~~~~~g~~~ 208 (546)
++|.+.+...+.. |+ -+| ...|++|.+-|.+.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 7776665544211 10 112 135788889999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhCCC---------
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADV----------------G------YTDEAFEIFEDMKSSEN--------- 257 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~~~--------- 257 (546)
+|..+|++....- .++.-|+.+.++|++- | +++-.+.-|+.+...+.
T Consensus 266 karDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 266 KARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred HHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 9999998876541 2333333333333321 1 11222233333322210
Q ss_pred ---------------------------------CCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 009025 258 ---------------------------------CQP------DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-- 296 (546)
Q Consensus 258 ---------------------------------~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-- 296 (546)
+.| -...|..+.+.|-..|+++.|..+|++..+-.+.--
T Consensus 344 Qn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred cCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 011 122345777888899999999999999887544321
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC----------C-------CHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 009025 297 -LFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT----------P-------DDRFCGCLLNVMTQTPK-EELGKLVECV 357 (546)
Q Consensus 297 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p-------~~~t~~~ll~~~~~~g~-~~a~~~~~~~ 357 (546)
..+|-.-.+.=.++.+++.|++++++.....-. | ....|..+++..-..|- +....+|+.+
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 234555555556778888999888776532111 1 11345555555555666 6777788888
Q ss_pred HHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc---cCccc-hhhHHHHHHHHhc---CCHHHHHHHHHHHHhcccc
Q 009025 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS---KDVKK-AYCNCLIDLCVNL---NLLENACKLLELGLTLEVY 430 (546)
Q Consensus 358 ~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~---~~~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~ 430 (546)
.+...-...++...+..+-... .++++.+.+++-. .-|++ ..|+..+.-+.+. -+.++|..+|+++++ |+.
T Consensus 504 idLriaTPqii~NyAmfLEeh~-yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp 581 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHK-YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP 581 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhH-HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC
Confidence 8766555555433333333333 6788888887632 22333 3888888776643 358899999999998 776
Q ss_pred cCc
Q 009025 431 TDI 433 (546)
Q Consensus 431 p~~ 433 (546)
|..
T Consensus 582 p~~ 584 (835)
T KOG2047|consen 582 PEH 584 (835)
T ss_pred HHH
Confidence 663
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=6.6e-06 Score=81.87 Aligned_cols=27 Identities=11% Similarity=-0.244 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 402 NCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 402 ~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
-....++...|+.++|.+++.......
T Consensus 311 ~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 311 LAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344455678999999999998877554
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.90 E-value=8.2e-08 Score=98.48 Aligned_cols=257 Identities=16% Similarity=0.094 Sum_probs=168.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 142 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
.++-.+...|+.|+.+||..+|.-|+..|+.+.|- +|.-|.-..+..+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677788888999999999999999999988888 8888888777778888888888888888877765
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHH
Q 009025 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-EAGFEPNLFVL 300 (546)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~ 300 (546)
.|...||+.|..+|...||+.- |+...+ -...++..+..+|.-.....++..+. ..+.-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq---------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ---------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH---------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 5678889999999999988776 333222 12234455666666666666665533 2344455443
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChhHHHHHHHHhhhh
Q 009025 301 TSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDI 377 (546)
Q Consensus 301 ~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~--~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~ 377 (546)
.+......|.++.+++++..+.... ..|-.+ +++-+..... ++...+.+.... .++... +..+..+-..
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e-~~~s~~-l~a~l~~ala 216 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE-APTSET-LHAVLKRALA 216 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc-CCChHH-HHHHHHHHHh
Confidence 4444566778888888887765321 122222 3554444433 444444444444 343333 2333333334
Q ss_pred hcchHHHHHHHHHhcccCc---cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCcccc
Q 009025 378 EGDFKKEATELFNSISKDV---KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 436 (546)
Q Consensus 378 ~g~~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 436 (546)
.| .++-|..++.+|.+.. ....+-.|+-+ .|+...+..+++-|++.|+.|+..|+
T Consensus 217 ag-~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 217 AG-DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred cC-chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 46 4588888888887653 22233344433 78888888889999999999997775
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=7.8e-08 Score=91.25 Aligned_cols=253 Identities=15% Similarity=0.109 Sum_probs=168.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
=.|++..++.-.+ ........+......+.++|...|+++.++ .++.... .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 4688888887666 333322334556667888999999877654 3333333 5666666555544443344455555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
-+++....+... +.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444443333332 3333333345677889999999988653 267777888999999999999999999998753
Q ss_pred CCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 257 NCQPDSWTFSSMITICS----CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
.| .+...|..++. ....+.+|..+|+++.+. +.++..+.+.+..++...|++++|.+++.+..+.+ .-|.
T Consensus 162 ---eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 162 ---ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp ---CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred ---Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 34 33444444443 344699999999998764 56788999999999999999999999999987643 2245
Q ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChhHH
Q 009025 333 RFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYV 367 (546)
Q Consensus 333 ~t~~~ll~~~~~~g~--~~a~~~~~~~~~~~~~~~~~ 367 (546)
.+...++.+....|+ +.+.+++.++....|....+
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 677778888888888 67888899988888876543
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=1.1e-05 Score=80.38 Aligned_cols=303 Identities=14% Similarity=0.012 Sum_probs=178.3
Q ss_pred CCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCC-ccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009025 82 PKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKW-RIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 159 (546)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 159 (546)
|+.+.+..... .++...|+.+.+...+....+... .++.. ........+...|++++|.+++++..+.. +.|...+
T Consensus 3 p~~~~a~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAA-LLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLAL 80 (355)
T ss_pred CccHHHHHHHH-HHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHH
Confidence 44455544433 344456777777777766654321 22322 22233445677899999999999988763 3344444
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 160 NNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 160 ~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
.. ...+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|++.+++..+... .+...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHH
Confidence 42 222222 3455555555544 1122333 34555667788999999999999999998753 35778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHH
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDS--WTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPNLFVL-T--SLIQCYG 308 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~ 308 (546)
.|...|++++|+.++++........++. ..|..+...+...|++++|..+|++...... .+..... + .++.-+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 9999999999999999988754212332 3456788899999999999999999864332 1122211 1 2333344
Q ss_pred hcCChhHHHHH--HHHhhhCCC--CCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC---hh----HHH--HHHHHh
Q 009025 309 KAQRTDDVVRA--LNRLPELGI--TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK---LG----YVV--KLLLEE 374 (546)
Q Consensus 309 ~~g~~~~A~~~--~~~m~~~~~--~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~---~~----~~~--~~L~~~ 374 (546)
..|..+.+.+. ......... ............++...|+ ++|..+++.+...... .. .+. -+....
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 44543333332 111111111 1111222356666777787 8888888877652221 11 111 222334
Q ss_pred hhhhcchHHHHHHHHHh
Q 009025 375 QDIEGDFKKEATELFNS 391 (546)
Q Consensus 375 ~~~~g~~~~~A~~~~~~ 391 (546)
+...|+ .++|.+.+..
T Consensus 317 ~~~~g~-~~~A~~~L~~ 332 (355)
T cd05804 317 AFAEGN-YATALELLGP 332 (355)
T ss_pred HHHcCC-HHHHHHHHHH
Confidence 455564 3777766654
No 76
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3e-06 Score=83.40 Aligned_cols=322 Identities=16% Similarity=0.058 Sum_probs=199.4
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChh
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA-GNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
|....+.++|..-|.+.... |+..+..+...-... -...+-.++|+.+.-. -..-+......+.....-...-+
T Consensus 151 y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~ 226 (611)
T KOG1173|consen 151 YVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE 226 (611)
T ss_pred hhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc
Confidence 33555677888888777654 555555443332221 1112333333321100 01223333333333321111111
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
.....-++-.-.|..-+........+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.
T Consensus 227 ~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV 305 (611)
T KOG1173|consen 227 ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLV 305 (611)
T ss_pred cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 111111111222345566677777777888888888888888887763 4456667777778888888888777777887
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 254 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
+.. +-...+|-++.--|.-.|+..+|.+.|.+....+ |. ...|-.+...|+-.|..|.|+..+...-+.=..-..
T Consensus 306 ~~y--P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl 381 (611)
T KOG1173|consen 306 DLY--PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL 381 (611)
T ss_pred HhC--CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc
Confidence 765 5667888888888888888888888888766532 33 457888888888888888888888776542111111
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--------Cc-cchhhH
Q 009025 333 RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--------DV-KKAYCN 402 (546)
Q Consensus 333 ~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--------~~-~~~~~~ 402 (546)
. +-.+.--|.+.+. .-|.+.|.+...+.|....+.+-++......+ ...+|...|+.... .+ -.++++
T Consensus 382 P-~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~-~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 382 P-SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYE-EYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred h-HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHh-hhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 1 1223334555666 88888888888888888777777776655555 34777777766431 11 234678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 403 CLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.|..+|.+.+++++|+..+++.+...
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 88888888888888888888887654
No 77
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=3.4e-05 Score=74.44 Aligned_cols=148 Identities=12% Similarity=0.154 Sum_probs=76.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~ 176 (546)
..+++..|..+|++.+.-.. .+...|-..+.+=.++..+..|..+++..... -|-+ ..|--.+.+=-..|+...|.
T Consensus 85 sq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 56777777777777776542 25566666666666666666666666655543 1221 12222333333345555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
++|++-.+ ..|+...|++.|+.=.+...++.|..+|++.+-. .|++.+|--....=.++|...-|..+|+..
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555444 2455555555555555555555555555554432 244444444444444444444444444433
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=7.7e-06 Score=77.46 Aligned_cols=300 Identities=10% Similarity=0.005 Sum_probs=182.3
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHh-CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-H
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARN-EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI-T 158 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~ 158 (546)
.|+.++.+..+..-..+-.++...|...|-.+.. .-.+-|+.....+.+.+...|+.++|+..|++.... .|+.. .
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 4444444443333333344555555555444433 234568888999999999999999999999998765 34332 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009025 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238 (546)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 238 (546)
.....-.+.+.|+.+....+...+.... .-+...|-.-........+++.|+.+-++.++.+.. +...|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHh
Confidence 2222334567788888888877776542 112333333344445667888888888877765322 44555555567778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HhcCChhHH
Q 009025 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI-QCY-GKAQRTDDV 316 (546)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~-~~~g~~~~A 316 (546)
.|+.++|.-.|+...... +-+..+|.-|+..|...|++.+|..+-+..... +.-+..+.+.+. ..+ -...--++|
T Consensus 347 ~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred ccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 888888888888877654 467788888888888888888877766554432 122444444331 122 222334667
Q ss_pred HHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh
Q 009025 317 VRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 391 (546)
Q Consensus 317 ~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~ 391 (546)
.++++.-.+ +.|+.. ..+.+...|...|. ++++.+++......++.. ..+.|++.+.... ...+|.+.|..
T Consensus 424 Kkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~N-e~Q~am~~y~~ 496 (564)
T KOG1174|consen 424 KKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQN-EPQKAMEYYYK 496 (564)
T ss_pred HHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 776666554 455543 45556666666677 777777777666555432 2255555544444 34666666554
No 79
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=3.2e-06 Score=90.97 Aligned_cols=236 Identities=12% Similarity=0.104 Sum_probs=186.2
Q ss_pred HHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 109 YDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKP---NMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 109 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
|++..... +.....|-..|....+.++.++|.+++++++.. ++.- -...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444332 335678999999999999999999999998754 2111 134677888877777888899999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---
Q 009025 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD--- 261 (546)
Q Consensus 185 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--- 261 (546)
.. -.-.+|..|...|.+.+++++|.++|+.|.++ +.-....|...+..+.+..+-+.|..++++..+. -|-
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eH 1599 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEH 1599 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhh
Confidence 52 23568899999999999999999999999876 2346788999999999999999999999998874 343
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH--HHHHHHH
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD--RFCGCLL 339 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll 339 (546)
.....-.+..-.+.|+.+++..+|+..+....+ -...|+.+|+.=.++|+.+.+..+|++....++.|-. ..|...+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 333445566667899999999999999876433 5788999999999999999999999999998887765 4667777
Q ss_pred HHHhcCCHHHHHH
Q 009025 340 NVMTQTPKEELGK 352 (546)
Q Consensus 340 ~~~~~~g~~~a~~ 352 (546)
..=...|+++..+
T Consensus 1679 eyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHhcCchhhHH
Confidence 6666667644444
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=6.7e-06 Score=76.28 Aligned_cols=91 Identities=15% Similarity=0.027 Sum_probs=50.7
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCChhHHH-HHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHH-HHHHhcCCH
Q 009025 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLI-DLCVNLNLL 414 (546)
Q Consensus 338 ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~-~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li-~~~~~~g~~ 414 (546)
+..+....|. .+|.++|-.+..........+ ..|+++|..++ ..+-|++++-++....+..+.-.+| .-|.+.+.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nk-kP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNK-KPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcC-CchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 4444455555 566666555444333333333 66667776666 4566777666665544443333333 456677776
Q ss_pred HHHHHHHHHHHhccc
Q 009025 415 ENACKLLELGLTLEV 429 (546)
Q Consensus 415 ~~A~~~~~~m~~~g~ 429 (546)
=-|-+.|+.+...+.
T Consensus 478 yyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 478 YYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHhhhHHHccCC
Confidence 667777776665553
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.75 E-value=6.8e-05 Score=75.24 Aligned_cols=205 Identities=15% Similarity=0.148 Sum_probs=135.5
Q ss_pred hhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 89 KLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168 (546)
Q Consensus 89 ~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 168 (546)
.++.+..+ ..|+-++|....+...+..++ +.+.|..+.-.+-...++++|+..|+.....+ +-|..+|.-+.-.-++
T Consensus 45 AmkGL~L~-~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 45 AMKGLTLN-CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQ 121 (700)
T ss_pred Hhccchhh-cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 34444433 778999999999888876555 78889998888888899999999999998875 4566777777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHH------HHHHhcCC
Q 009025 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLL------AMCADVGY 241 (546)
Q Consensus 169 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~ 241 (546)
.++++........+.+.. +.....|..+..++.-.|+...|..++++..+.. -.|+...|.-.. ......|.
T Consensus 122 mRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 778777777777776642 1244566677777777788888888877776543 234544444332 23345566
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009025 242 TDEAFEIFEDMKSSENCQPDSWTF-SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 302 (546)
.++|.+.+...... ..|...+ ..-...+.+.+++++|..++..++.++ ||..-|..
T Consensus 201 ~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~ 257 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYE 257 (700)
T ss_pred HHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHH
Confidence 66666666554332 2233332 234455667777777777777777653 55444433
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=1.6e-06 Score=85.61 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=154.5
Q ss_pred hhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 87 ASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166 (546)
Q Consensus 87 ~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 166 (546)
...+.....+.+.|++.+|.-.|+...+..+. +...|--|....+.+++-..|+..+++..+.. +-|....-.|.-.|
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSy 363 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSY 363 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 33344555555888888888888888877544 77788888888888888888888888888764 33566777777778
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCcCHHHHHHHHHHHH
Q 009025 167 GRAKRPWQVKTIYKEMTDNGLSP--------NWNTYASLLRAYGRARYGEDTLSVYREMK-EKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~g~~p--------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~ 237 (546)
...|.-..|.+.++.-+....+- +...-.. ..+.....+.+..++|-++. ..+..+|......|.-.|-
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 88888888888887775542110 0000000 11111122334444554444 3343467777777777788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDV 316 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A 316 (546)
-.|++++|...|+...... +-|...||-|...++...+.++|+..|++.++ ++|+ +.+...|.-+|...|.+++|
T Consensus 442 ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred cchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHH
Confidence 8888888888888887764 55777888888888888888888888888777 3455 33444566677788888888
Q ss_pred HHHHHHhh
Q 009025 317 VRALNRLP 324 (546)
Q Consensus 317 ~~~~~~m~ 324 (546)
.+.|-+.+
T Consensus 518 ~~hlL~AL 525 (579)
T KOG1125|consen 518 VKHLLEAL 525 (579)
T ss_pred HHHHHHHH
Confidence 87776654
No 83
>PLN02789 farnesyltranstransferase
Probab=98.67 E-value=3.3e-05 Score=74.44 Aligned_cols=183 Identities=7% Similarity=0.053 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
..++..+-..+...++.++|+.++.++++.. +-+..+|+.-..++...| ++++++..++++.+... .+..+|+...-
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~ 114 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHH
Confidence 3455566666667778888888888888753 223345666556666666 56777777777776543 24455665554
Q ss_pred HHHhcCCh--HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--
Q 009025 200 AYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-- 275 (546)
Q Consensus 200 ~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-- 275 (546)
.+.+.|+. ++++.+++++.+...+ +..+|+...-.+...|+++++++.++++++.+ .-|..+|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccc
Confidence 55555542 5566777777665433 66777777777777777777777777777665 45566666555544443
Q ss_pred -CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009025 276 -GKV----SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309 (546)
Q Consensus 276 -g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 309 (546)
|.. ++..++..+++...+. |...|+.+...+..
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKD 229 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhc
Confidence 111 2344444444443322 44455555554444
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=3.8e-05 Score=86.58 Aligned_cols=301 Identities=13% Similarity=0.022 Sum_probs=173.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHH
Q 009025 127 LIKLYGTAGNFDGCLNVYEEMKAIGV------KPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NTY 194 (546)
Q Consensus 127 li~~~~~~g~~~~A~~~~~~m~~~g~------~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~ 194 (546)
....+...|++++|..+++...+.-- .+. ......+...+...|++++|...+++....-...+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 34445567788888888877654210 111 112222334456778888888888887653111121 234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC-CHH
Q 009025 195 ASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENC-QP-DSW 263 (546)
Q Consensus 195 ~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~-~~~ 263 (546)
+.+...+...|++++|...+++.... |.. ....++..+...+...|++++|...+++.... +.. .+ ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55566677788888888888777642 111 11234555666778888888888888775542 110 01 223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCCHH--H-
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEA--GFEP--NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPDDR--F- 334 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~--t- 334 (546)
.+..+...+...|++++|...+++.... ...+ ....+..+...+...|++++|...+.+.... ....... .
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 3445566677778888888888876542 1112 1333444566677888888888888777532 1111110 0
Q ss_pred H-HHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH----HHHHHHHhhhhhcchHHHHHHHHHhccc-------Cc-cchh
Q 009025 335 C-GCLLNVMTQTPK-EELGKLVECVEKSNSKLGY----VVKLLLEEQDIEGDFKKEATELFNSISK-------DV-KKAY 400 (546)
Q Consensus 335 ~-~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~----~~~~L~~~~~~~g~~~~~A~~~~~~~~~-------~~-~~~~ 400 (546)
. ...+..+...|. +.+..++............ ....++..+...|+ .++|...++.... .. ...+
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ-FDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0 011223334555 6777766554432211111 12455666666674 4777777766432 11 1235
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 401 CNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+..+..++.+.|+.++|...+.++.+..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6667778889999999999999887654
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.66 E-value=0.0002 Score=73.47 Aligned_cols=341 Identities=15% Similarity=0.138 Sum_probs=191.1
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HH
Q 009025 115 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-NT 193 (546)
Q Consensus 115 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~ 193 (546)
..+.-|...|..|.-+....|+++.+.+.|++....- --....|+.+...+...|.-..|..+++.-......|+. ..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455677888888888888888888888888876432 234556777777777777777777777665543322322 22
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHH--------------------------------------------------HHcCC
Q 009025 194 YASLLRAYG-RARYGEDTLSVYREM--------------------------------------------------KEKGM 222 (546)
Q Consensus 194 ~~~ll~~~~-~~g~~~~A~~~~~~m--------------------------------------------------~~~g~ 222 (546)
+-..-..|. +.+..++++.+-.+. .+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 222222222 224444444443333 33221
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------
Q 009025 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEP------ 295 (546)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p------ 295 (546)
. |....--+.--|+..++++.|.+..++..+.+. .-+...|..|.-.+...+++.+|+.+.+...+. |...
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNR-GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 1 112222223334555667777777777666643 566666766666667777777777776655432 1100
Q ss_pred ------------CHHHHHHHHHHHH------h---c--------------CChhHHHHHHHHhh--------hCC-----
Q 009025 296 ------------NLFVLTSLIQCYG------K---A--------------QRTDDVVRALNRLP--------ELG----- 327 (546)
Q Consensus 296 ------------~~~~~~~li~~~~------~---~--------------g~~~~A~~~~~~m~--------~~~----- 327 (546)
-..|...++..+- . . ++..+|.+....+. ..|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0111111111111 0 0 00111111111000 000
Q ss_pred ----CC--CCH------HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh-cc
Q 009025 328 ----IT--PDD------RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS-IS 393 (546)
Q Consensus 328 ----~~--p~~------~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~-~~ 393 (546)
+. |+. ..|......+.+.+. +++...+.+..+..|-...++...|..+...| ..++|.+.|.. +.
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~-~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG-QLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH-hhHHHHHHHHHHHh
Confidence 01 111 123344445555555 77777777777777777777788888877777 44777776655 44
Q ss_pred cCcc-chhhHHHHHHHHhcCCHHHHHH--HHHHHHhcccccCccccCccceeecccccch-hhHHHHHHHHHHHHH
Q 009025 394 KDVK-KAYCNCLIDLCVNLNLLENACK--LLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWINDLS 465 (546)
Q Consensus 394 ~~~~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~~~ 465 (546)
.+|+ +....++..++.+.|+..-|.. ++..|.+.+ |. +...|-...+-+.. |.-..|.+.+...++
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~----n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PL----NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CC----CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 4554 5688999999999999888877 888888887 65 44567655444443 777777777665544
No 86
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=4.6e-05 Score=73.41 Aligned_cols=207 Identities=10% Similarity=0.047 Sum_probs=152.2
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-- 172 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-- 172 (546)
+...++.++|+.+.+.+++.... +..+|+.--.++...| +++++++.++++.+.. +-+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 44678899999999999886433 5567777777777777 6799999999998775 34566788776666677763
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCH----HHH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV---GYT----DEA 245 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~A 245 (546)
+++..+++++++... -|..+|+...-++.+.|+++++++.++++++.+.. +..+|+.....+.+. |.. +++
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 677888889888653 47889998888999999999999999999988755 677888777666655 222 467
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSCR----GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 309 (546)
+++..+++... +-|...|+-+...+... +...+|...+.+..+.++ .+......|++.|+.
T Consensus 203 l~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 77777777664 66788888888887763 334567777777665432 255666666766664
No 87
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=4.3e-08 Score=59.61 Aligned_cols=32 Identities=31% Similarity=0.618 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 292 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 292 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
|+.||..+|++||.+|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 88
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=4.4e-08 Score=59.56 Aligned_cols=32 Identities=44% Similarity=0.740 Sum_probs=14.1
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 221 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=1.4e-05 Score=86.37 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
+...|-..|......++.++|.+++++....=.+ .--...|.++++.-...|.-+...++|+++.+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4677888898999999999999999998753210 112346778888888888889999999999873 22346788
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC--hhHHHHHHHHhhhhh
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK--LGYVVKLLLEEQDIE 378 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~--~~~~~~~L~~~~~~~ 378 (546)
.|...|.+.+.+++|.++|+.|.++ ..-....|...+..+.+..+ +.|..++....+.-|. ...++.-.+..-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999964 33566789999999999988 8888899999998888 344666667777788
Q ss_pred cchHHHHHHHHHhcccC-c-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 379 GDFKKEATELFNSISKD-V-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 379 g~~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
|+. +.++.+|+..-.. | -...|+.+|+.-.++|+.+-+..+|++.+..++.|.
T Consensus 1614 GDa-eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1614 GDA-ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred CCc-hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 855 9999999886532 2 355999999999999999999999999988875444
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.58 E-value=3.3e-06 Score=80.20 Aligned_cols=250 Identities=14% Similarity=0.103 Sum_probs=159.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009025 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208 (546)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 208 (546)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445688888886665 222211123345556778888889876543 4444433 566666665555554434555
Q ss_pred HHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 209 DTLSVYREMKEKGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
.++.-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555554443333222 22333333335566789999999988643 3567778889999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCC
Q 009025 288 MLEAGFEPNLFVLTSLIQCYG----KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 362 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~ 362 (546)
|.+.+ .| .+...+..++. ..+.+.+|+.+|+++.+. ..++..+.+.+..+....|+ ++|..++.+....+|
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 98742 34 33444444443 334799999999998764 56788899999999999999 999999999888888
Q ss_pred ChhHHHHHHHHhhhhhcchHHHHHHHHHhccc
Q 009025 363 KLGYVVKLLLEEQDIEGDFKKEATELFNSISK 394 (546)
Q Consensus 363 ~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~ 394 (546)
....++..++.+....|+..+.+.+++..+..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88877755555555555443567777777653
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=5.8e-05 Score=68.64 Aligned_cols=314 Identities=14% Similarity=0.067 Sum_probs=204.6
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL-LDTMGRAKRPWQV 175 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a 175 (546)
.+..++++|++++..-.+...+ +......|..+|....++..|-+.|+++-.. .|...-|... ...+.+.+.+..|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHH
Confidence 4677899999998887776432 7788889999999999999999999998765 4665555432 3557788899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
+++...|... ++...-..-+.+. ...+++..+..++++....| +..+.+.......+.|++++|.+-|+...
T Consensus 98 LrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 98 LRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHH
Confidence 9999888653 2332222223332 34578888888888876443 55556666666678999999999999998
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCHH--------HHHHHHH-------
Q 009025 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-------------PNLF--------VLTSLIQ------- 305 (546)
Q Consensus 254 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------p~~~--------~~~~li~------- 305 (546)
+-+. --....|+..+.- .+.|+.+.|++...+++++|++ ||+. .-..++.
T Consensus 172 qvsG-yqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 172 QVSG-YQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred hhcC-CCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 8775 3345567766544 4678999999999999987753 2211 1233333
Q ss_pred HHHhcCChhHHHHHHHHhh-hCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHH
Q 009025 306 CYGKAQRTDDVVRALNRLP-ELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKE 384 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~ 384 (546)
.+.+.|+++.|.+.+-.|. +..-..|++|...+.-.-......+...-+.-+...+|-....+..|.-.||+.. ..+-
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe-yf~l 328 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE-YFDL 328 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH-HHhH
Confidence 4567899999999999886 3334567777766543333322222233334445557766666655556677766 6677
Q ss_pred HHHHHHhcccC----ccchhhHHHHHHHHh-cCCHHHHHHHHHH
Q 009025 385 ATELFNSISKD----VKKAYCNCLIDLCVN-LNLLENACKLLEL 423 (546)
Q Consensus 385 A~~~~~~~~~~----~~~~~~~~li~~~~~-~g~~~~A~~~~~~ 423 (546)
|-+++.+-..- -+...| -|++++.- .-..++|++-++.
T Consensus 329 AADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 329 AADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHH
Confidence 77776654321 011223 34455443 3455666554443
No 92
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.57 E-value=0.00054 Score=68.90 Aligned_cols=169 Identities=9% Similarity=0.104 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------CC
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLS---VTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN----------CQ 259 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~~ 259 (546)
.|..+.+.|-..|+++.|..+|++..+-..+-- ..+|..-..+=.+..+++.|++++++...... -+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 455666677777777777777777665433211 23444444444556667777777666543221 00
Q ss_pred C------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-
Q 009025 260 P------DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD- 332 (546)
Q Consensus 260 ~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 332 (546)
+ +...|...++.--..|-++....+++++++..+. +.........-+-.+..+++++++|++-+..=--|+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 0 1223444455555566677777777777664432 2222111222233455566677766665543223443
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 009025 333 RFCGCLLNVMT----QTPKEELGKLVECVEKSNS 362 (546)
Q Consensus 333 ~t~~~ll~~~~----~~g~~~a~~~~~~~~~~~~ 362 (546)
..|+..+.-+. ....+.|..+|++..+.-|
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 23443333332 2222777777777777555
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=7.9e-06 Score=82.83 Aligned_cols=213 Identities=13% Similarity=0.075 Sum_probs=173.3
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+...|-...|+.+|++.. .|.-+|.+|...|+..+|..+..+..+. +||...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 44455568999999999998764 5677888999999999999998888874 789999999999888777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
-+++|.++.+..-.. +-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.+++..|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 788888888765432 22223333345789999999999877654 2356788888888899999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
...... +-+...||++-.+|.+.|+-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++.+
T Consensus 544 rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 998764 5677899999999999999999999999999877 34666777777888999999999999999875
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=2.4e-05 Score=72.82 Aligned_cols=184 Identities=13% Similarity=0.030 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC-HHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN-WNT 193 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~ 193 (546)
....+..+...+.+.|++++|...|+++.... |+ ..++..+..++.+.|++++|...++++.+.... +. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34444555555555566666666555554432 22 124444555555556666666666655543211 01 012
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 009025 194 YASLLRAYGRA--------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 265 (546)
Q Consensus 194 ~~~ll~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 265 (546)
+..+..++.+. |+.++|.+.|+.+.+.... +...+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~---------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL---------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH---------HHHH
Confidence 33333333332 4556666666666554211 1222211111000 000 00 0001
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 266 SSMITICSCRGKVSEAEAMFNEMLEAGF-EP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 266 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..+...|.+.|++++|...|++..+... .| ....+..+..++.+.|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1344456666666666666666665422 12 345566666666666666666666666554
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=8e-06 Score=80.75 Aligned_cols=214 Identities=11% Similarity=0.039 Sum_probs=104.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
.+.|++.+|.-.|+..+..... +...|--|......+++-..|+..+++..+.+ +-|......|.-.|...|.-..|
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHHH
Confidence 4556666666666666555322 45666666666666666666666666666654 44556666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCChhHHHHHHHHhh-hCCCCCCHHHHHHHHHHHhcCCH-H
Q 009025 282 EAMFNEMLEAGFEPNLFVLTSLI-----------QCYGKAQRTDDVVRALNRLP-ELGITPDDRFCGCLLNVMTQTPK-E 348 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~g~-~ 348 (546)
.++++.-+...+. |..+. ..+.....+.+..++|-++. ..+..+|..+...|.-.|--.|. +
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 6666655442211 00000 01111122233334444443 23323444444444444444455 5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCcc-chhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 349 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
+|...|+.++..+|....+++-||..++... .-++|+..+++. ...|. +.++-.|.-.|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~-~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGN-RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCc-ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 5555555555555555555555555544433 334454444432 22332 223444455555555555555444443
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.00024 Score=70.74 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=41.5
Q ss_pred hhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009025 89 KLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 146 (546)
Q Consensus 89 ~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 146 (546)
.+..+..+...|++++|++....+...+ +-+...+..-+.++.+.++|++|+.+.+.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk 71 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK 71 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh
Confidence 3455566668889999999998888765 34666777777777888888888755443
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00018 Score=81.12 Aligned_cols=330 Identities=12% Similarity=-0.016 Sum_probs=194.9
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
.+...|++.+|.......... ..-..............|+++.+..+++.+.......+..........+...|++++
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344666766666544333211 000011112223344567777777776665221111122223344555677899999
Q ss_pred HHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCH
Q 009025 175 VKTIYKEMTDNGL------SPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCADVGYT 242 (546)
Q Consensus 175 a~~~~~~m~~~g~------~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~ 242 (546)
+..++......-- .+. ......+...+...|++++|...+++..+.-...+ ....+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 9999988754310 111 12222333456788999999999998776311112 13456666778889999
Q ss_pred HHHHHHHHHHHhCCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcC
Q 009025 243 DEAFEIFEDMKSSENC--QP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFE--P-NLFVLTSLIQCYGKAQ 311 (546)
Q Consensus 243 ~~A~~~~~~m~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g 311 (546)
++|...+++......- .+ ...++..+...+...|++++|...+++..+. +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 9999999887643110 11 2235566777888999999999999887642 221 1 2234455666777889
Q ss_pred ChhHHHHHHHHhhhC--CCCCC--HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCh----hH--HH-HHHHHhhhhhc
Q 009025 312 RTDDVVRALNRLPEL--GITPD--DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL----GY--VV-KLLLEEQDIEG 379 (546)
Q Consensus 312 ~~~~A~~~~~~m~~~--~~~p~--~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~----~~--~~-~~L~~~~~~~g 379 (546)
++++|...+.+.... ...+. ...+..+.......|+ ++|...++......... .. .. ......+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999999887642 11222 2334445566677888 88888887775432111 11 11 11122233345
Q ss_pred chHHHHHHHHHhcccCc--cch----hhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 380 DFKKEATELFNSISKDV--KKA----YCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 380 ~~~~~A~~~~~~~~~~~--~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
..++|...+....... ... .+..+..++...|+.++|..++++....
T Consensus 668 -~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 668 -DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred -CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4588888876654321 111 1456777889999999999999998754
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=0.00034 Score=74.40 Aligned_cols=216 Identities=8% Similarity=0.021 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 304 (546)
+...+-.|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|...+++....... +......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 45555555555555555555555555555542 333444455555555555555555555555554322 344445555
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC-CChhHHHHHHHHhhhhhcch
Q 009025 305 QCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSN-SKLGYVVKLLLEEQDIEGDF 381 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~-~~~~~~~~~L~~~~~~~g~~ 381 (546)
.++.+.|++++|..+|+++... .|+ ..++..+..++...|+ ++|...|+...+.. +....+-+.+++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-------- 231 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVD-------- 231 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHH--------
Confidence 5555555566666555555542 222 3455555555555555 55555555554422 222111233322
Q ss_pred HHHHHHHHHhcccCc-----c--chhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccchhhHH
Q 009025 382 KKEATELFNSISKDV-----K--KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAAL 454 (546)
Q Consensus 382 ~~~A~~~~~~~~~~~-----~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~~g~~~ 454 (546)
+..-..+++.+..+. + ..+...+|.-|.+... .+++-.|.-+. +.--.++..+..|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~---~rIl~vi~sl~~GGAE 297 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRN-----------AEYDAGPESFV---GPVLMINGSLGAGGAE 297 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCc-----------ccccCCCCCCc---ceEEEEeCCCCCCcHH
Confidence 123333444443221 1 1233333333332221 12233344322 0122356677789999
Q ss_pred HHHHHHHHHHHHH
Q 009025 455 TALHIWINDLSKA 467 (546)
Q Consensus 455 ~a~~~~~~~~~~~ 467 (546)
..+..+...+.+.
T Consensus 298 r~~~~La~~l~~~ 310 (694)
T PRK15179 298 RQFVNTAVALQSA 310 (694)
T ss_pred HHHHHHHHHHHhc
Confidence 9887777777654
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=1.4e-05 Score=71.70 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
|... ..+-..+...|+-+....+........ .-|....+..+....+.|++..|...+.+..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 666677777788888777776654332 3455666778888888999999999988887753 568888998888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
+|.+.|+++.|..-|.+..+.-.. +...+|.|.-.|.-.|+.+.|..++......+ .-|...-..|.......|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChH
Confidence 999999999999888888776332 56677888888888899999999998888765 557788888888888899999
Q ss_pred HHHHHHHHHHH
Q 009025 280 EAEAMFNEMLE 290 (546)
Q Consensus 280 ~A~~~~~~m~~ 290 (546)
+|.++...-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99888776554
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=3.4e-05 Score=71.79 Aligned_cols=187 Identities=9% Similarity=-0.027 Sum_probs=127.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH--H
Q 009025 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--T 227 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~ 227 (546)
.....+..+...+...|++++|...|+++.... |+ ..++..+..+|.+.|++++|+..++++.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345677778888888999999999999887753 32 246677788888999999999999998876432111 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009025 228 LYNTLLAMCADV--------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 299 (546)
Q Consensus 228 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 299 (546)
++..+..++... |++++|.+.|+.+.... +-+...+..+..... ... ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------HH
Confidence 455555555544 67888888888887753 223233322221111 000 000 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCC-CC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCC
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLPELGI-TP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 362 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~ 362 (546)
...+...|.+.|++++|+..|++..+... .| ....+..+..++.+.|+ ++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22456778999999999999999986421 23 34678899999999999 999999998877655
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=0.00032 Score=69.17 Aligned_cols=323 Identities=15% Similarity=0.065 Sum_probs=206.2
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQV 175 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 175 (546)
...|+++.|+..|.+.+..... |.+.|..=..+|+..|++++|++=-.+-.+. .|+ ..-|.-...++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 3788999999999988876544 8888888888999999998887765555554 565 34788888888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------------------------------------------Ch
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRAR------------------------------------------------YG 207 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------------------------------------------------~~ 207 (546)
+.-|.+=++.. +.|...++-+.+++.... +.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 88888776642 224455555555441110 00
Q ss_pred HHHHHHHHHHHHc--------C-------CCc------------C----------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 208 EDTLSVYREMKEK--------G-------MQL------------S----------VTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 208 ~~A~~~~~~m~~~--------g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
+...+....+... | ..| | ..-.-.+.++..+..+++.|++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0001111000000 0 001 0 0123456667777778888888888
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCChhHHHHHHHHh
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS-------LIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~g~~~~A~~~~~~m 323 (546)
..... .-+..-++....+|...|.+.+....-+...+.|.. ...-|+. +..+|.+.++++.|+..|.+.
T Consensus 249 ~a~el---~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 249 KALEL---ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHhH---hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 87764 334445566677788888888777776666665432 2222332 333566677788888888776
Q ss_pred hhCCCCCCHHH-------------------------HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhh
Q 009025 324 PELGITPDDRF-------------------------CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI 377 (546)
Q Consensus 324 ~~~~~~p~~~t-------------------------~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~ 377 (546)
......||... ...=.+.+.+.|+ ..|++.|.++++.+|+....+...+.+|.+
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK 404 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 64433443321 1122445566677 888899999999999998888888888888
Q ss_pred hcchHHHHHHHHHh-cccCcc-chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 378 EGDFKKEATELFNS-ISKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 378 ~g~~~~~A~~~~~~-~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.|+. ..|+.-.+. +..+|+ ...|.--..++.-..+++.|++.|++.++.+
T Consensus 405 L~~~-~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 405 LGEY-PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HhhH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8844 555544333 333443 2355555666667778889999998887776
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=0.00015 Score=74.61 Aligned_cols=289 Identities=12% Similarity=0.120 Sum_probs=181.2
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-C--------CCCCHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-G--------VKPNMITYNN 161 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~~~~~ 161 (546)
...++|.--|++|.|.+-.+.+. +..+|..|.++|.+..+++-|.-.+-.|... | -.++ .+=.-
T Consensus 733 l~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eak 805 (1416)
T KOG3617|consen 733 LDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAK 805 (1416)
T ss_pred hceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhH
Confidence 55678888999999999888775 6678999999999999998888777777532 1 1222 22222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
+.......|.+++|+.+|.+-.. |..|=..|...|.+++|.++-+.--+.. =..||.....-+...++
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhcc
Confidence 33334577889999999988765 3455677888899999998876532222 23567777777778888
Q ss_pred HHHHHHHHHHHH----------hCCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009025 242 TDEAFEIFEDMK----------SSEN--------CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303 (546)
Q Consensus 242 ~~~A~~~~~~m~----------~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 303 (546)
.+.|+++|++.. .... -..|...|.--...+-..|+++.|+.+|...++ |-.+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 999988887632 1110 011222233333344456777777777766554 4556
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc--------CCChh-HHHHHHHH
Q 009025 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS--------NSKLG-YVVKLLLE 373 (546)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~--------~~~~~-~~~~~L~~ 373 (546)
+...|-.|+.++|-++-++- -|......|.+.|-..|+ .+|.+.|...... ..+.. ..+++
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nl--- 1015 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANL--- 1015 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH---
Confidence 66667778888887766543 255667778888888888 8888777654321 11111 11111
Q ss_pred hhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHH
Q 009025 374 EQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 421 (546)
Q Consensus 374 ~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 421 (546)
+....|...-.|-.+|++... ....-+..|.+.|.+.+|+++-
T Consensus 1016 al~s~~~d~v~aArYyEe~g~-----~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGG-----YAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcch-----hhhHHHHHHHhhcchHHHHHHH
Confidence 111223233455556665542 1233445677888887776643
No 103
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00053 Score=61.74 Aligned_cols=252 Identities=13% Similarity=0.120 Sum_probs=161.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-VK 176 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~ 176 (546)
-.|.+..++..-...... +-++..-.-+-++|...|.+..... +.+... .|.......+......-++.+. ..
T Consensus 20 Y~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 456666655544433322 2344455556667777776554332 222222 3333343333333333333333 34
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
++.+.+.......+......-...|+..|++++|++...... +....-.=+..+.+..+++-|.+.+++|.+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~-- 165 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ-- 165 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 455666555444454555555667889999999998887622 233333334556778889999999999987
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 257 NCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
-.+..|.+-|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+-...++...|++++|..++++...+. .-++
T Consensus 166 --ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp 241 (299)
T KOG3081|consen 166 --IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP 241 (299)
T ss_pred --cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH
Confidence 3456677766666654 45788999999999863 45888889999999999999999999999998764 3356
Q ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChhHH
Q 009025 333 RFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYV 367 (546)
Q Consensus 333 ~t~~~ll~~~~~~g~--~~a~~~~~~~~~~~~~~~~~ 367 (546)
.|...++.+-...|. +-..+.+.++....|....+
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 677777776667777 44556777777777766543
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=8.3e-05 Score=66.69 Aligned_cols=117 Identities=9% Similarity=0.068 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGK--VSEA 281 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A 281 (546)
++.+++...++...+.+. .|...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 334444444444444322 244555555555555555555555555555443 3344444444443 234444 2555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555544322 344445555555555555555555555544
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.38 E-value=0.0018 Score=60.34 Aligned_cols=297 Identities=11% Similarity=0.056 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL---DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA- 195 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~- 195 (546)
++.-..-+.+.+...|++.+|+.-|....+- |+..|.++. ..|...|+...|+.=+.+.++ ++||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH
Confidence 4445556677777778888888877777653 333444433 356667777777777777776 356643221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcC--H------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLS--V------------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 261 (546)
--...+.+.|.+++|..-|+..++....-. . ......+..+...|+...|+.+...+.+.. +.|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wd 188 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWD 188 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cch
Confidence 122445677888888888887776532110 0 112233455566788888888888888764 667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 341 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 341 (546)
...|..-..+|...|++..|+.=++..-+..- -+..++-.+-..+...|+.+.++...++.++ +.||...+-..-.-
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHH
Confidence 77788888888888888888777666554322 3566666677777888888888888887776 45776432222222
Q ss_pred HhcC-------------CH-HHHHHHHHHHHHcCCChhH----HHHHHHHhhhhhcchHHHHHHHHHhc-ccCcc-chhh
Q 009025 342 MTQT-------------PK-EELGKLVECVEKSNSKLGY----VVKLLLEEQDIEGDFKKEATELFNSI-SKDVK-KAYC 401 (546)
Q Consensus 342 ~~~~-------------g~-~~a~~~~~~~~~~~~~~~~----~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~-~~~~ 401 (546)
+.+. +. .++..-.+.+.+.+|.... ....+..++...| .+-+|+....++ ..+|+ +.++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~-~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE-QFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC-CHHHHHHHHHHHHhcCchHHHHH
Confidence 2111 11 2333334445556665322 2356666666666 446676665554 33343 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 402 NCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 402 ~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.--.++|.-...++.|+.=|+.+.+.+
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 666777777777888888777776544
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=2.6e-05 Score=79.21 Aligned_cols=216 Identities=12% Similarity=0.050 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.-..+...+...|-...|+.+|++.. .|.-+|.+|...|+..+|..+..+..++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34467778888899999999998765 4667888999999999999998888873 688999999999888
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 282 (546)
..--+++|.++++....+ +-..+..-..+.+++.++.+.|+.-.+.+ +.-..+|-.+..+..+.+++..|.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHH
Confidence 888888898888765432 11122222234789999999999888766 567789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 009025 283 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS 360 (546)
Q Consensus 283 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~ 360 (546)
+.|.......+. +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|-..+....+.|. ++|.+.+..+...
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999998874322 46789999999999999999999999999876 4455566777777788888 9999988887653
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=0.00024 Score=75.57 Aligned_cols=183 Identities=14% Similarity=0.071 Sum_probs=140.2
Q ss_pred HHHcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 009025 131 YGTAGNFDGCLNVYEEMKA--IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYG 207 (546)
Q Consensus 131 ~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 207 (546)
..+++....+.+-+-++.. +....+...+..|.....+.|.+++|+.+++...+. .| +......+...+.+.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~ 136 (694)
T PRK15179 59 LERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGI 136 (694)
T ss_pred HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccH
Confidence 3444444444333333322 123556889999999999999999999999999985 45 456777888999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
++|+..+++....... +......+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|++
T Consensus 137 eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 137 EAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987543 67788888999999999999999999999843 45688999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..+.. .+....|+.++ ++...-..+++++.-
T Consensus 214 a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~ 244 (694)
T PRK15179 214 GLDAI-GDGARKLTRRL------VDLNADLAALRRLGV 244 (694)
T ss_pred HHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCc
Confidence 88642 24455565544 334455566776653
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.34 E-value=3.4e-05 Score=65.40 Aligned_cols=92 Identities=8% Similarity=-0.101 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++....+. .+...+..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 34444445555555555555544443 33444455555555555555555555555554322 1344444444555555
Q ss_pred CChhHHHHHHHHhhh
Q 009025 311 QRTDDVVRALNRLPE 325 (546)
Q Consensus 311 g~~~~A~~~~~~m~~ 325 (546)
|+.++|+..|++..+
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.34 E-value=0.00011 Score=65.99 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=118.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009025 160 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 239 (546)
..+-..+...|+-+....+....... ...|....+.++....+.|++..|+..|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555666777777777766664432 23356666678888888888888888888877654 45888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
|++++|..-|.+..+.. .-+...++.|.-.|.-.|+++.|..++......+.. |...-..+.......|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888888887764 446667788888888888888888888887765443 556666677777888888888877
Q ss_pred HHHhh
Q 009025 320 LNRLP 324 (546)
Q Consensus 320 ~~~m~ 324 (546)
-..-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 65543
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00028 Score=64.32 Aligned_cols=264 Identities=15% Similarity=0.107 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------------
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ------------- 223 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~------------- 223 (546)
+.+...-...+.|+++.|.+-|+...+- |.. ....||..+-.| +.|+++.|++...+++++|++
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~teg 223 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEG 223 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence 3333444456788999999999888775 454 466787766554 678899999999999888753
Q ss_pred cCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 224 LSV---------------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 224 ~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
||+ ..+|.-...+.+.|+++.|.+-+-+|.-+.....|.+|...+.-+- -.+++.+..+-+.-+
T Consensus 224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFL 302 (459)
T ss_pred CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHH
Confidence 222 1233334455678899999999888875544466778776654332 234455555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCChh
Q 009025 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLG 365 (546)
Q Consensus 289 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~--~~a~~~~~~~~~~~~~~~ 365 (546)
.+.+. -...||..++-.||++.-++-|-.++.+=...-.+ .+...|+ ++.++.-... +++.+-++.+.+.-- +
T Consensus 303 L~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~--~ 378 (459)
T KOG4340|consen 303 LQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLT--E 378 (459)
T ss_pred HhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHH--H
Confidence 55443 34578888888999999999988887654322111 1223333 5555554443 666665544432100 0
Q ss_pred HHHHHHHHhhhhh-cchHHHHHHHHHhcccC--ccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 366 YVVKLLLEEQDIE-GDFKKEATELFNSISKD--VKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 366 ~~~~~L~~~~~~~-g~~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
..-..-+....+. .+.-.+.+..++..... .-.++.-+-...|++..++..+.++|+.-.+..
T Consensus 379 kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 379 KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 0000001110000 00001111222221110 011234455567889999999999999766554
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=7.1e-05 Score=63.43 Aligned_cols=108 Identities=6% Similarity=-0.106 Sum_probs=76.6
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 009025 107 GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186 (546)
Q Consensus 107 ~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 186 (546)
.+|++..+. ++..+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++.....
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456666554 33345556677777788888888888777664 3466677777777888888888888888877753
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 187 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
+.+...+..+..++.+.|+.++|+..|+...+.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 236677777777777788888888888777765
No 112
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.32 E-value=0.0028 Score=65.34 Aligned_cols=323 Identities=15% Similarity=0.063 Sum_probs=201.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-cCCh---
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGR-AKRP--- 172 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~-~g~~--- 172 (546)
++|+++.+-+.|++....- --....|+.+-..|...|.-..|+.+++.-....-.|+ ...+-..-..|.+ .+..
T Consensus 335 ~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 7888888888888876432 22555677777777777776777777766543321232 2222211122211 1222
Q ss_pred -----------------------------------------------hHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhc
Q 009025 173 -----------------------------------------------WQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRA 204 (546)
Q Consensus 173 -----------------------------------------------~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~ 204 (546)
.++++.+++..+.+. .|++.-| +---|+..
T Consensus 414 ldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~ 491 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQ 491 (799)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHH
Confidence 234444555554332 2333222 33346667
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 284 (546)
++.+.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- ..|......-+..-...++.+++...
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhhhhcccHHHHHHH
Confidence 8899999999999988666689999999999999999999999998876542 11111111111111112222222111
Q ss_pred HHHH---------------------------------------------------HHcCC-----------CCC------
Q 009025 285 FNEM---------------------------------------------------LEAGF-----------EPN------ 296 (546)
Q Consensus 285 ~~~m---------------------------------------------------~~~~~-----------~p~------ 296 (546)
...+ ...|. .|+
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~ 649 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL 649 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH
Confidence 1111 00110 111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHh
Q 009025 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 374 (546)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~ 374 (546)
...|......+.+.+..++|...+.+... +.| ....|......+-..|. ++|...|......+|+.......++.+
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 12345566677888888888877777765 333 33455555556666777 999999999999999999999999999
Q ss_pred hhhhcchHHHHHH--HHHhc-ccCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 375 QDIEGDFKKEATE--LFNSI-SKDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 375 ~~~~g~~~~~A~~--~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+.+.|+. .-|.. ++..+ ..+| +...|-.|...+.+.|+.++|.+.|+-..+..
T Consensus 728 lle~G~~-~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 728 LLELGSP-RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHhCCc-chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9998853 44444 55554 4455 56699999999999999999999999887654
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.30 E-value=4.7e-05 Score=68.27 Aligned_cols=120 Identities=13% Similarity=0.026 Sum_probs=66.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--hHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARY--GEDT 210 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~--~~~A 210 (546)
.++.++++..++...+.. +.|...|..+...+...|+++.|...|++..+... .+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555555443 34555666666666666666666666666655432 244555555554 244454 3566
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 211 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 211 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666655433 45555556666666666666666666665544
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00087 Score=59.96 Aligned_cols=189 Identities=19% Similarity=0.173 Sum_probs=125.3
Q ss_pred CChhHHHHHHHHHHH---CC-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 009025 170 KRPWQVKTIYKEMTD---NG-LSPNW-NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244 (546)
Q Consensus 170 g~~~~a~~~~~~m~~---~g-~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 244 (546)
.+.++..+++.+++. .| ..++. ..|..++-+...+|+.+.|..+++.+.++- +-+...--.-.--+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345666666666653 23 34443 345555666677788888888888877652 2222222222223445788888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
|+++++.+.+.+ +.|.+++..-+...-..|+--+|++-+.+..+. +.-|...|.-+.+.|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 888888888776 677778877777777777777888777777764 44588888888888888888888888888887
Q ss_pred hCCCCCCH-HHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCh
Q 009025 325 ELGITPDD-RFCGCLLNVMTQTPK----EELGKLVECVEKSNSKL 364 (546)
Q Consensus 325 ~~~~~p~~-~t~~~ll~~~~~~g~----~~a~~~~~~~~~~~~~~ 364 (546)
- +.|.. ..+..+...+.-.|. +-+.++|....+.++..
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 5 34543 344455555443332 67777888888877733
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=4.4e-05 Score=74.33 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=49.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 176 (546)
+.|++++|+..++.+...- +-|+..+......+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 4444555555554444431 123334444444445555555555555554443 233 333334444444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 211 (546)
.+++...... +-|...|..|..+|...|+..+|.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 4444444432 224444555555555444444443
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.29 E-value=0.0027 Score=59.31 Aligned_cols=290 Identities=11% Similarity=0.059 Sum_probs=194.2
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTL---IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY-NNLLDTMG 167 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~ 167 (546)
....+...|++.+|+.-|....+- |+..|.++ ...|...|+-..|+.=|...++. +||-..- -.-...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 334444778899999988888764 55555554 45677888888888888887775 6775432 22334577
Q ss_pred hcCChhHHHHHHHHHHHCCCCC--CHHH------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSP--NWNT------------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p--~~~~------------~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
+.|.+++|..=|+.+++....- .... ....+..+...|+...|+.+...+.+.. +.|...|..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 8899999999999988763211 1111 1223445566789999999999888864 45888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHH------
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV----LTSL------ 303 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~l------ 303 (546)
.+|...|++..|+.=++..-+.. ..++.++--+-..+...|+.+.++..+++.++. .||-.. |-.|
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 99999999999988888877654 566777777788888899999998888888773 354322 2111
Q ss_pred ---HHHHHhcCChhHHHHHHHHhhhCCCCCCHH---HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhh
Q 009025 304 ---IQCYGKAQRTDDVVRALNRLPELGITPDDR---FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 376 (546)
Q Consensus 304 ---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~ 376 (546)
+......++|-++++..+...+....-..+ .+..+-.++...++ .+|++...++....|+...++.--+.+|.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 122345577777777777766543221122 34444445555566 88888888888888887666544445554
Q ss_pred hhcchHHHHHHHHHhcc
Q 009025 377 IEGDFKKEATELFNSIS 393 (546)
Q Consensus 377 ~~g~~~~~A~~~~~~~~ 393 (546)
... ..+.|+.-|+...
T Consensus 353 ~dE-~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 353 GDE-MYDDAIHDYEKAL 368 (504)
T ss_pred hhH-HHHHHHHHHHHHH
Confidence 444 4467766666543
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00028 Score=75.86 Aligned_cols=214 Identities=12% Similarity=0.077 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHH------------------HH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI-TYNNLLDTMGRAKRPWQVKTI------------------YK 180 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~------------------~~ 180 (546)
+...+..|+..|...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+.+..+ ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 4456667777777777777777777765554 34432 222222344444444443332 22
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 009025 181 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 260 (546)
Q Consensus 181 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 260 (546)
.|...+ -+...+..+..+|-+.|+.++|..+|+++.+... -|..+.|.+...|... ++++|++++.+......
T Consensus 108 ~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--- 180 (906)
T PRK14720 108 KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--- 180 (906)
T ss_pred HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH---
Confidence 222221 1234556666677777777777777777776653 3666777777777776 77777777766654211
Q ss_pred CHHHHHHHHHHH---H--hcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009025 261 DSWTFSSMITIC---S--CRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334 (546)
Q Consensus 261 ~~~~~~~li~~~---~--~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 334 (546)
+..-|+.+...+ + ..-+++.-..+.+.+... |+..-..++-.+-..|-..+++++++.+|+.+.+..-. |...
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a 259 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKA 259 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhh
Confidence 111111111110 0 111222333333333322 33333445555556666667777777777777664322 3344
Q ss_pred HHHHHHHHh
Q 009025 335 CGCLLNVMT 343 (546)
Q Consensus 335 ~~~ll~~~~ 343 (546)
..-++.+|.
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 444555444
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.00072 Score=66.15 Aligned_cols=137 Identities=14% Similarity=0.038 Sum_probs=77.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHH
Q 009025 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-VTLYNTLLAMCADVGYTDE 244 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 244 (546)
+...|+++.|+..++.++.. .+-|..-.....+.+.+.++..+|.+.++++... .|+ ...+-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34455666666666665554 2223444444555666666666666666666654 233 4445555566666666666
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
|+.+++...... +-|...|..|..+|...|+..++..-..+ +|...|+++.|+..+....
T Consensus 393 ai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 393 AIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 666666665554 45566666666666666666555544433 2344566666666665555
Q ss_pred h
Q 009025 325 E 325 (546)
Q Consensus 325 ~ 325 (546)
+
T Consensus 453 ~ 453 (484)
T COG4783 453 Q 453 (484)
T ss_pred H
Confidence 4
No 119
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00079 Score=71.00 Aligned_cols=285 Identities=14% Similarity=0.068 Sum_probs=168.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..+-+++|..+|+..- .+..+.+.||.- -+..++|.+.-++.. ....|..+..+-.+.|...+|.+
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 5677888988887653 355555555543 366777777665543 34578888888888888888876
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
-|-+. .|...|.-+++...+.|.+++-.+++....++.-.|.+. +.||-+|++.++..+.++++.
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~------- 1190 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA------- 1190 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------
Confidence 65332 366788888888888888888888888777766555444 578888888888877666542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--------------------GFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
-||......+.+-|...|.++.|.-+|...-.. .-.-+..+|..+-.+|...+.+.-|.
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH
Confidence 466666666666666666666666655422110 00113334444444444433332221
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc-chHHHHHHHHH-hccc
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-DFKKEATELFN-SISK 394 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g-~~~~~A~~~~~-~~~~ 394 (546)
|-..++.....-..-++.-|...|. ++...+++...........+++-|+..|++-. +..-+-+++|- ++..
T Consensus 1270 -----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNi 1344 (1666)
T KOG0985|consen 1270 -----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNI 1344 (1666)
T ss_pred -----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcch
Confidence 2222223333345556666666666 66666666655544444456666766666653 11122223332 1111
Q ss_pred C------ccchhhHHHHHHHHhcCCHHHH
Q 009025 395 D------VKKAYCNCLIDLCVNLNLLENA 417 (546)
Q Consensus 395 ~------~~~~~~~~li~~~~~~g~~~~A 417 (546)
+ .....|+-|+-.|.+-..+|.|
T Consensus 1345 pKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1345 PKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 0 1233677777777777666665
No 120
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.20 E-value=0.0099 Score=60.27 Aligned_cols=320 Identities=13% Similarity=0.112 Sum_probs=198.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
...++++|++.|..+...+. -|...|.-+.-.-++.|+++...+.-..+.+.. +-....|..+..+..-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55689999999999988653 377788877777778888888888777777653 3345678888888888899999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHH------HHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 009025 178 IYKEMTDNG-LSPNWNTYASLLR------AYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 178 ~~~~m~~~g-~~p~~~~~~~ll~------~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 249 (546)
++++..+.. -.|+...|.-... ...+.|..++|.+.+..-... + .|.. .-.+-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 999888764 2456655544332 335667777777776654332 1 1322 2334456678888999999999
Q ss_pred HHHHhCCCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHH----------------------------------HHcCC
Q 009025 250 EDMKSSENCQPDSWTFS-SMITICSCRGKVSEAE-AMFNEM----------------------------------LEAGF 293 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m----------------------------------~~~~~ 293 (546)
..+.... ||..-|. .+..++.+-.+.-++. .+|... .+.|+
T Consensus 243 ~~Ll~rn---Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 243 RRLLERN---PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHhhC---chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9888763 5555444 4444443332322222 333333 23333
Q ss_pred CCCHHHHHHHHHHHHhcCChh---H-HHHHHHHhhhCCC----------CCCH--HHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 294 EPNLFVLTSLIQCYGKAQRTD---D-VVRALNRLPELGI----------TPDD--RFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 294 ~p~~~~~~~li~~~~~~g~~~---~-A~~~~~~m~~~~~----------~p~~--~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
.+- +..+...|-.-...+ + +..+...+...|. .|.. .|+..+...+-+.|+ +.|..+++.
T Consensus 320 p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 221 122222221111111 1 1111111111111 2333 345667777788888 899999999
Q ss_pred HHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccC--ccchhhH-HHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009025 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD--VKKAYCN-CLIDLCVNLNLLENACKLLELGLTLEV 429 (546)
Q Consensus 357 ~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~--~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~ 429 (546)
.....|.....+-.-++++...| .+++|..++++...- +|+ ..| --+.-..+.++.++|.++..+..+.|.
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G-~l~eAa~~l~ea~elD~aDR-~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAG-LLDEAAAWLDEAQELDTADR-AINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccchhH-HHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 88888888877766677777777 458888888876542 232 223 333445678888999888888777664
No 121
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0083 Score=60.18 Aligned_cols=317 Identities=15% Similarity=0.133 Sum_probs=173.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----------------------
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP----------------------- 154 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------------- 154 (546)
|.+..|+|+..++-..+ .+..+...-...+.+.|++++|+++|+.+.+.+..-
T Consensus 91 rlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 56666666666662221 233455555667778888888888888886543210
Q ss_pred ----CHHHHHHHHH---HHHhcCChhHHHHHHHHHHHCCC-------CCCH------H-HHHHHHHHHHhcCChHHHHHH
Q 009025 155 ----NMITYNNLLD---TMGRAKRPWQVKTIYKEMTDNGL-------SPNW------N-TYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 155 ----~~~~~~~ll~---~~~~~g~~~~a~~~~~~m~~~g~-------~p~~------~-~~~~ll~~~~~~g~~~~A~~~ 213 (546)
...+|..+.+ .+...|++.+|+++++...+.|. .-+. . .---|.-.+...|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 0113433333 35567889999998888732210 0000 0 112233455678899999998
Q ss_pred HHHHHHcCCCcCH----HHHHHHHHHHHhcCCHH------------------------------------------HHHH
Q 009025 214 YREMKEKGMQLSV----TLYNTLLAMCADVGYTD------------------------------------------EAFE 247 (546)
Q Consensus 214 ~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~------------------------------------------~A~~ 247 (546)
+...+..... |. +.-|.|+..-....-++ ...+
T Consensus 247 y~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8888776432 32 11222211110000000 0001
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH----
Q 009025 248 IFEDMKSSENCQPDSWTFSSMITICSC-R-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN---- 321 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~~~~~li~~~~~-~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~---- 321 (546)
+.+.........|. ..+..++..+.+ . .....+.+++...-+....-...+--.++......|+++.|++++.
T Consensus 326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 11111111111333 334444443322 2 2467777777777665444345666777778888899999999888
Q ss_pred ----HhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH-------cCCChhHHHHHHHHhhhhhcchHHHHHHHH
Q 009025 322 ----RLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK-------SNSKLGYVVKLLLEEQDIEGDFKKEATELF 389 (546)
Q Consensus 322 ----~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~-------~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~ 389 (546)
.+.+.+-.|- +...++..+.+.+. +-|..++.+..+ ..+.....+..++..-.+.| ..++|..++
T Consensus 405 ~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G-~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG-NEEEASSLL 481 (652)
T ss_pred hhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC-chHHHHHHH
Confidence 6666554554 44455555555555 445555444433 22333334444444444556 458888888
Q ss_pred Hhccc--CccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 390 NSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 390 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
+++.. .++..+...++.+|++. +.+.|..+-+.+
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 88764 45666788888888876 466776665543
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.0091 Score=59.26 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPKEELGKLVEC 356 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~a~~~~~~ 356 (546)
.+....++++++..-..--..+|-.+++.-.+..-.+.|..+|.+..+.+..+ +..++++++.-++......|.++|+.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 34444455555432211123456677777778888999999999999888777 66788999998888777999999999
Q ss_pred HHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccC---c--cchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 357 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD---V--KKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 357 ~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
-.+.-++...++......+...++. ..|..+|++.... + ...+|..+|+--..-|+...+.++-+++.
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd-~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDD-NNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcc-hhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8887777777666666655555644 7889999887543 2 24599999999999999999988888764
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=0.0001 Score=61.87 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009025 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308 (546)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 308 (546)
...+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|..+|++..+.+. .+...+..+...|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 3334444444455555555555444433 33444444444555555555555555554444321 13344444444455
Q ss_pred hcCChhHHHHHHHHhhh
Q 009025 309 KAQRTDDVVRALNRLPE 325 (546)
Q Consensus 309 ~~g~~~~A~~~~~~m~~ 325 (546)
..|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554444
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00025 Score=63.74 Aligned_cols=181 Identities=17% Similarity=0.178 Sum_probs=101.4
Q ss_pred hcCCHHHHH-HHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 98 RAGNVEMAF-GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 98 ~~g~~~~A~-~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 176 (546)
..++.++-+ .+.+.+......-+......-...|.+.|++++|++...... +......=...+.+..+++.|.
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 334433333 233444444333333334444456677777777777665511 2223333334455666677777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
+.+++|.+. .+..|.+-|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+-+..++...|++++|+.++++.
T Consensus 158 ~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 158 KELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 777777663 244555555555543 34566777777777654 4566777777777777777777777777777
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVS-EAEAMFNEMLE 290 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~ 290 (546)
..+. ..+..+...+|-.-...|.-. -..+.+.+++.
T Consensus 234 L~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 234 LDKD--AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred Hhcc--CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7665 445555555555555555443 33444455544
No 125
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.004 Score=61.67 Aligned_cols=322 Identities=16% Similarity=0.135 Sum_probs=200.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 009025 129 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYG 207 (546)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 207 (546)
.+.+..|+++.|+..|-+.+... ++|.+.|..-..+|+..|++++|.+=-.+-++ +.|+ ...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 45667899999999999998876 56889999999999999999999876666665 4565 46788899999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------------------------H-----------------
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----------------------------T----------------- 242 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------------------------~----------------- 242 (546)
++|+.-|.+-.+... -+...++-+..++..... +
T Consensus 87 ~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999998877632 245566666555511100 0
Q ss_pred ---HHHHHHHHHHHh--------CCC------CCC------------C----------HHHHHHHHHHHHhcCCHHHHHH
Q 009025 243 ---DEAFEIFEDMKS--------SEN------CQP------------D----------SWTFSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 243 ---~~A~~~~~~m~~--------~~~------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~ 283 (546)
+..+...-.+.. .+. ..| | ..-...+.++..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 000000000000 000 001 0 0112366777777788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC--CH----HHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP--DD----RFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 284 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~----~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
-+....+.. -+..-++....+|...|.+.+....-....+.|-.- |. ..+..+..++.+.++ +.+..+|.+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 888887754 355556666777888888877776666655544211 11 112223334444555 555555544
Q ss_pred HHH--------------------------cCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCc-cchhhHHHHHHH
Q 009025 357 VEK--------------------------SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDV-KKAYCNCLIDLC 408 (546)
Q Consensus 357 ~~~--------------------------~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~-~~~~~~~li~~~ 408 (546)
... .+|....-...-+..+.+.|++ ..|...+.++ ..+| |...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy-~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY-PEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 332 2233322223335556666755 6666666553 3444 567888889999
Q ss_pred HhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccc-hhhHHHHHHHHHHHHHHHHHcC
Q 009025 409 VNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS-LGAALTALHIWINDLSKALESG 471 (546)
Q Consensus 409 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~-~g~~~~a~~~~~~~~~~~~~~g 471 (546)
.+.|.+.+|++=-+..++.. |+. +.++. .|.+..++..|...++. ++.|
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~--p~~-----------~kgy~RKg~al~~mk~ydkAlea-y~ea 452 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD--PNF-----------IKAYLRKGAALRAMKEYDKALEA-YQEA 452 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC--chH-----------HHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 99999999888777776663 442 22333 37777778777777653 4444
No 126
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.12 E-value=0.00076 Score=68.70 Aligned_cols=190 Identities=13% Similarity=0.169 Sum_probs=124.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
+.|+++.|..-|-+... .-..+.+......|.+|+.+++.+.... .-.--|..+.+-|+..|+++.|.+
T Consensus 718 ~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHH
Confidence 56677777776654432 2234566677788999999999887653 233457778888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
+|.+. ..++-.|.+|.+.|++++|.++-++. .|.......|-+-..-+-+.|++.+|+++|-.+.
T Consensus 787 lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~---- 851 (1636)
T KOG3616|consen 787 LFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---- 851 (1636)
T ss_pred HHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----
Confidence 88653 23556788999999999998887654 3444456677777777778888888887775443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 322 (546)
.|+. .|.+|-+.|..++.+++.++-... .-..|...+..-|-..|++..|..-|-+
T Consensus 852 -~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 852 -EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred -CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 4543 356777777777776666543211 1122333444455555565555555443
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00012 Score=72.06 Aligned_cols=126 Identities=15% Similarity=0.185 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
......|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++..... +-+...+..-.+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAE 242 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3445566777777889999999999988874 44 34457788888888889999999988764 557777777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 271 ICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
.|.+.++.+.|.++.+++.+.. |+ ..+|..|..+|.+.|+++.|+..++.+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8889999999999999998753 44 5689999999999999999999888775
No 128
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.10 E-value=0.00022 Score=72.37 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=132.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
.|.+......+.+|+.+++.+.+... -..-|..+..-|+..|+++.|+++|-+.. .++-.|.+|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccc
Confidence 34555667788888888888776632 23446777788899999999999887543 2455678999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHH
Q 009025 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355 (546)
Q Consensus 277 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~ 355 (546)
+|+.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+. .||. .|..|-+.|. ++..++.+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 9999988866543 344456677777777888899999988876553 3553 4667788887 77777665
Q ss_pred HHHHcCCC-hhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHH
Q 009025 356 CVEKSNSK-LGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 422 (546)
Q Consensus 356 ~~~~~~~~-~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 422 (546)
+- .++ ......-++..+...|+ +.+|++-|-+.. -|.+-++.|...+.|++|-.+-+
T Consensus 875 k~---h~d~l~dt~~~f~~e~e~~g~-lkaae~~flea~------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 875 KH---HGDHLHDTHKHFAKELEAEGD-LKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred Hh---ChhhhhHHHHHHHHHHHhccC-hhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 43 222 22233455566666674 477776665443 36677888888888888866554
No 129
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00078 Score=62.97 Aligned_cols=212 Identities=14% Similarity=0.083 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChhHHHH
Q 009025 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT-----MGRAKRPWQVKT 177 (546)
Q Consensus 103 ~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~g~~~~a~~ 177 (546)
+.|++++-.+.+. =+..--.|+--|.+.+++.+|..+.+++.-. .|-......+..+ ........-|.+
T Consensus 271 EgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 271 EGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred ccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 4556655554432 2223333444566666666666665554311 1211111111111 111122334555
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLSPNWN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.|+-.-+.+..-|.. --.++...+.-..++|+++-++..+..-=..-|...+ .+..+++..|.+.+|+++|-++....
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh
Confidence 554444444333322 2233444444445566666666655543222222222 35566666666666666666655433
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 257 NCQPDSWTFS-SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV-LTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 257 ~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
..|..+|. .|.+.|.+++..+.|++++-++.. ..+..+ ...+.+-|.+.+++--|-+.|+.+...
T Consensus 424 --ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 424 --IKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred --hhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 23444444 344566666666666666544432 112222 223334556666666666666666543
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=6.4e-06 Score=50.63 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 400 YCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0057 Score=54.90 Aligned_cols=187 Identities=12% Similarity=0.104 Sum_probs=109.6
Q ss_pred CChHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009025 135 GNFDGCLNVYEEMKAI---G-VKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209 (546)
Q Consensus 135 g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 209 (546)
.+.++.++++.+++.. | ..++.. .|..++-+....|+.+.|...++.+... ++-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 3445555555555422 2 334443 3455555666667777777777776664 21122221111222334577777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
|+++++.+.+.+ +.|.+++---+...-..|+--+|++-+.+..+.- ..|...|.-+...|...|++++|.-.++++.
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777777665 3366666666666666777777777776666543 5677777777777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHhhhC
Q 009025 290 EAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLPEL 326 (546)
Q Consensus 290 ~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 326 (546)
-..+ .+...+..+.+.+.-. .+.+-|.++|.+..+.
T Consensus 182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5321 1334444555544333 3455677777777653
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=0.00023 Score=59.59 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
.....+...+.+.|++++|.+.|+.+...+ +.+...|..+...+...|++++|..+|+.....+ +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 444455555666666666666666665543 2255566666666666666666666666665544 4455566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 009025 272 CSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~ 291 (546)
|...|++++|...|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666653
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.06 E-value=0.0018 Score=69.94 Aligned_cols=210 Identities=10% Similarity=0.040 Sum_probs=137.6
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC------------------C
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG------------------V 152 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------------~ 152 (546)
..+..+.+.|++++|.++.+...+.... ....|-.+...+.+.++++++..+ .+...- .
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~ 112 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLY 112 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhh
Confidence 4455555899999999999977775221 233344444466666666665555 332210 0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009025 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232 (546)
Q Consensus 153 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 232 (546)
.-+...+..+..+|-+.|+.+++..+++++++.. +-|..+.|.+...|... ++++|++++.+....-+ +..-|+.+
T Consensus 113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~ 188 (906)
T PRK14720 113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGI 188 (906)
T ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHH
Confidence 1123567778888999999999999999999987 45889999999999999 99999999998876511 11112222
Q ss_pred HHHH-----HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009025 233 LAMC-----ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307 (546)
Q Consensus 233 i~~~-----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 307 (546)
...+ ....+++.-.++.+.+...-....-..++--+-..|....+++++..+|+.+++.... |.....-++.+|
T Consensus 189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y 267 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHH
Confidence 2111 1122333444444444333111333445556667888899999999999999986544 666777788877
Q ss_pred H
Q 009025 308 G 308 (546)
Q Consensus 308 ~ 308 (546)
.
T Consensus 268 ~ 268 (906)
T PRK14720 268 K 268 (906)
T ss_pred H
Confidence 6
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=8.2e-06 Score=50.14 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 009025 299 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331 (546)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 331 (546)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.02 E-value=0.025 Score=59.64 Aligned_cols=224 Identities=13% Similarity=0.144 Sum_probs=158.6
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY--GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
...+++.+|++..+.+.+. .|+. .|..++.++ .+.|+.++|..+++.....+.. |..|..++-.+|-+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3678899999999988876 3443 344555554 5789999999999888776644 88899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------HHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----------TDE 244 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~ 244 (546)
|..+|++..+. -|+......+..+|.|.+++.+-.+.--+|-+. .+-+...+-++++.+.+.-. ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999875 467778888888999988877655544444332 23355666666666655321 235
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN-EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
|.+.++.+.+.+...-+..-...-...+...|++++|++++. ...+.-..-+...-+.-++.+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 677777777655201222222333445567888999999994 3444433445556667788889999999999999999
Q ss_pred hhCC
Q 009025 324 PELG 327 (546)
Q Consensus 324 ~~~~ 327 (546)
.+.|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8876
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.1e-05 Score=49.31 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhccccc
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 431 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 431 (546)
.+|+.+|.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1e-05 Score=49.42 Aligned_cols=33 Identities=36% Similarity=0.749 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 154 (546)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555554
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=0.00032 Score=69.13 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 237 (546)
.-..|+..+...++++.|.++|+++.+.. |+ ....+++.+...++..+|.+++++..... +-|...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456667777889999999999998864 44 44457888888889999999999988653 336777777788899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+.++++.|+++.+++.... +-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999864 45667999999999999999999999987663
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.89 E-value=0.027 Score=60.01 Aligned_cols=162 Identities=12% Similarity=0.104 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAY 201 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~ 201 (546)
.|..|...|...-+..+|...|+...+.+ .-+...+..+.+.|++..++++|..+.-..-+... ..-...|.-..-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45555555555555555666665555543 23444555555556666666665555222111100 00011111222334
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS-WTFSSMITICSCRGKVSE 280 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 280 (546)
.+.++...|+.-|+...+..+. |...|..+..+|...|++..|.++|.+.... .|+. ..---..-+.+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL---RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc---CcHhHHHHHHHHHHHHHhhhHHH
Confidence 4555555555555555554332 5555666666666666666666666555442 2221 111111222344555555
Q ss_pred HHHHHHHHH
Q 009025 281 AEAMFNEML 289 (546)
Q Consensus 281 A~~~~~~m~ 289 (546)
|...+....
T Consensus 649 ald~l~~ii 657 (1238)
T KOG1127|consen 649 ALDALGLII 657 (1238)
T ss_pred HHHHHHHHH
Confidence 555555444
No 140
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.89 E-value=0.00022 Score=55.38 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=46.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKR--------PWQVKTIYKEMTDNGLSPNWNTYAS 196 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~~~~~ 196 (546)
..|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555677777777777777776 6677777777766555421 2234555666666666666666666
Q ss_pred HHHHHH
Q 009025 197 LLRAYG 202 (546)
Q Consensus 197 ll~~~~ 202 (546)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665554
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.00096 Score=56.66 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=33.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
..+...|++++|...|+........++ ......+...+...|++++|+..++..... ......+......|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCC
Confidence 334444444444444444444321111 112222334444444444444444332211 122233334444444444
Q ss_pred CHHHHHHHHH
Q 009025 277 KVSEAEAMFN 286 (546)
Q Consensus 277 ~~~~A~~~~~ 286 (546)
+.++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 4444444443
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.86 E-value=0.00091 Score=56.81 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 009025 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW--NTYASLL 198 (546)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll 198 (546)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........++. ...-.|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444444 4788888888888887763 222 233334556788889999999999998887532221 2444567
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
..+...|++++|+..++...... .....+......|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888899999999987754332 34556777888899999999999988764
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.002 Score=66.71 Aligned_cols=238 Identities=15% Similarity=0.133 Sum_probs=155.3
Q ss_pred CHHHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-C--------CC
Q 009025 120 DPNAFSTLIK--LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-G--------LS 188 (546)
Q Consensus 120 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--------~~ 188 (546)
|..|--.++. .|...|+.+.|.+-.+.++ +...|..|...|.+..+++-|.-.+..|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 6677777764 5677899999988877665 4468999999999999999888777776432 1 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 189 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
++ .+-.-+.-.....|.+++|+.+|.+-++. ..|=..|-..|++++|.++-+.-.+ ..-..||-..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR----iHLr~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR----IHLRNTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc----eehhhhHHHH
Confidence 21 22222333345779999999999987653 3445567789999999998765332 2234567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----------cCC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009025 269 ITICSCRGKVSEAEAMFNEMLE----------AGF---------EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~----------~~~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (546)
..-+...++++.|++.|++... ..+ ..|...|..-...+-..|+.|.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 7777788899999888875321 110 11223333333344456777777777776553
Q ss_pred CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 330 PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 330 p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
|-+++...+-.|+ ++|.++-++- ....+-..|++.|...| .+.+|..+|.+.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g-~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDG-DVVKAVKFFTRA 993 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhH-HHHHHHHHHHHH
Confidence 4456666666777 7777665542 11223356778887777 457888877653
No 144
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.85 E-value=0.00037 Score=61.20 Aligned_cols=98 Identities=23% Similarity=0.434 Sum_probs=68.2
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------
Q 009025 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTA-----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---------- 170 (546)
Q Consensus 106 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------- 170 (546)
...|+..... ..|..+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 4466666432 45888999999998864 778888889999999999999999999999875521
Q ss_pred ------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 171 ------RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 171 ------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
+-+-|++++++|...|+-||..++..|++.+++.+
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 12335555555555555555555555555554443
No 145
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.012 Score=62.62 Aligned_cols=223 Identities=13% Similarity=0.159 Sum_probs=142.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
.-+.++.|.+.-++.. .+.+|..+..+-.+.|...+|++-|-+. -|+..|..+++.+.+.|.+++-.+
T Consensus 1087 ~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 4567888877766653 6778999999999999999998877442 466789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-- 255 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 255 (546)
.+...++..-+|... +.||-+|++.++..+-++++. -|+......+.+-|...|.++.|.-+|.....-
T Consensus 1155 yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~ 1225 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAK 1225 (1666)
T ss_pred HHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHH
Confidence 888877776555544 578889999988877655432 134444444444444444444444333322100
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 256 -----------------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318 (546)
Q Consensus 256 -----------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 318 (546)
..-.-+..||..+..+|...+.+..| +|...++.....-..-++..|-..|-+++.+.
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence 00022445666666666655554433 23222233344556678888889999998888
Q ss_pred HHHHhhhCCC-CCCHHHHHHHHHHHhcCCHH
Q 009025 319 ALNRLPELGI-TPDDRFCGCLLNVMTQTPKE 348 (546)
Q Consensus 319 ~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~ 348 (546)
+++.... + +...-.|+-|.-.|++-..+
T Consensus 1301 l~Ea~LG--LERAHMgmfTELaiLYskykp~ 1329 (1666)
T KOG0985|consen 1301 LLEAGLG--LERAHMGMFTELAILYSKYKPE 1329 (1666)
T ss_pred HHHhhhc--hhHHHHHHHHHHHHHHHhcCHH
Confidence 8776542 2 12234566666666666553
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.79 E-value=0.00031 Score=69.46 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009025 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 263 (546)
Q Consensus 186 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 263 (546)
+...+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..++++.+++.=..-|+ -||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-F~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-FPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-CCChh
Confidence 33446666666777776667777777777666543 1111223445777777777777777777777777775 67777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
+++.|++.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777766655555556655555555444
No 147
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.76 E-value=0.00076 Score=59.30 Aligned_cols=95 Identities=24% Similarity=0.384 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CChhHHH
Q 009025 259 QPDSWTFSSMITICSC-----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----------------QRTDDVV 317 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~ 317 (546)
..+..+|..+++.|.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 355666666667777777777777777777765432 3346799
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH--HHHHHH
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKL 353 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~a~~~ 353 (546)
+++++|...|+.||..|+..|++.+.+.+. ....++
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rm 161 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRM 161 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999999999998887 444443
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.5e-05 Score=45.78 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLTLEV 429 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 429 (546)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.75 E-value=0.085 Score=55.83 Aligned_cols=208 Identities=17% Similarity=0.118 Sum_probs=147.9
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 160 (546)
-|+.+.+..+..+... |.|+.++|..+++.....+.. |..|...+-..|-+.|+.++|..+|++.... .|+.....
T Consensus 39 ~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~ 114 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLY 114 (932)
T ss_pred CCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHH
Confidence 4566666666666655 999999999999888776555 8889999999999999999999999999876 58888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHcC-CCcCHHHH
Q 009025 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR----------YGEDTLSVYREMKEKG-MQLSVTLY 229 (546)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------~~~~A~~~~~~m~~~g-~~~~~~~~ 229 (546)
.+..+|.|.+++.+-.++=-+|-+. ++-+.+.+-++++.+...- -..-|.+.++.+.+.+ ..-+..-.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 8999999999886654444444332 3345666666666665432 1234667777777654 22222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009025 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 293 (546)
......+-..|++++|++++..-........+...-+.-+..+...+++.+..++-.++...|.
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 3334455678899999999954333322245555566778888999999999999999888764
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00045 Score=68.39 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=86.1
Q ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009025 117 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194 (546)
Q Consensus 117 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 194 (546)
.+.+......++..+....+.+++..++.+.... ....-..|..+++..|...|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3446666666677776667777777777776654 22222345567888888888888888888777777888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009025 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 195 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 239 (546)
|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888877777665555666666666666554
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00059 Score=53.09 Aligned_cols=80 Identities=15% Similarity=0.294 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCcCHHHH
Q 009025 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRAR--------YGEDTLSVYREMKEKGMQLSVTLY 229 (546)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~ 229 (546)
....|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455666666888888888888888887 778888888887776543 233455666666666677777777
Q ss_pred HHHHHHHHh
Q 009025 230 NTLLAMCAD 238 (546)
Q Consensus 230 ~~li~~~~~ 238 (546)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 776666543
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.69 E-value=0.00086 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m 252 (546)
+...+...|++++|.+.|+..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444433333
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=4e-05 Score=45.50 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009025 299 VLTSLIQCYGKAQRTDDVVRALNRLPELG 327 (546)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 327 (546)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.68 E-value=0.00088 Score=51.31 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009025 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308 (546)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 308 (546)
+..+...+...|++++|..++++..+.. +.+...+..+...+...|++++|.+.|+........ +...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 5566777788889999999998887764 445577778888888889999999999888775432 4467778888888
Q ss_pred hcCChhHHHHHHHHhhh
Q 009025 309 KAQRTDDVVRALNRLPE 325 (546)
Q Consensus 309 ~~g~~~~A~~~~~~m~~ 325 (546)
..|++++|...+.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 88999999888887765
No 155
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.60 E-value=0.011 Score=62.92 Aligned_cols=181 Identities=11% Similarity=0.037 Sum_probs=124.2
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
...+...|-+..+. .++ ...|..|...|....+...|.+.|+...+.+-. |...+....+.|+...++++|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44555555444443 222 467888888888888888999999988876432 67778888899999999999998843
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
..-+......-...|....-.|.+.++...|..-|+...+..+. |...|..+.++|..+|++..|+++|.+... ++|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 33322110111223334555678888999999999988876543 788899999999999999999999988876 456
Q ss_pred CHHHHHHHHH--HHhcCCH-HHHHHHHHHHHH
Q 009025 331 DDRFCGCLLN--VMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 331 ~~~t~~~ll~--~~~~~g~-~~a~~~~~~~~~ 359 (546)
+.. |..+-. ..+..|. .++...+..+..
T Consensus 628 ~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LSK-YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 653 222222 2244566 777777766654
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.0027 Score=51.58 Aligned_cols=11 Identities=18% Similarity=0.305 Sum_probs=3.9
Q ss_pred CCHHHHHHHHH
Q 009025 240 GYTDEAFEIFE 250 (546)
Q Consensus 240 g~~~~A~~~~~ 250 (546)
|++++|.+.++
T Consensus 90 ~~~~~A~~~~~ 100 (119)
T TIGR02795 90 GDKEKAKATLQ 100 (119)
T ss_pred CChHHHHHHHH
Confidence 33333333333
No 157
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.57 E-value=0.019 Score=57.09 Aligned_cols=186 Identities=15% Similarity=0.141 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA---KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
-+++..+++...+.-..-+..+|..+.+---.. ...+....++++++..-..--..+|..+|+.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 345555665554432222333444333221111 12445555666665532222234677777777777788888888
Q ss_pred HHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009025 214 YREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 214 ~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 292 (546)
|.+..+.+..+ ++..+++++.-|| .++.+-|.++|+.-.+.- .-+..--...+..+...++-..+..+|++.+..+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 88888776665 6777777777666 456778888888755542 2233333456677777788888888888888765
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 293 FEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 293 ~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+.++ ...|..+|+-=..-|++..++++-+++..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5444 46788888877778888888877777654
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.55 E-value=0.0023 Score=63.21 Aligned_cols=90 Identities=11% Similarity=0.011 Sum_probs=56.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
..+...|++++|++.|+++++.... +...|..+..+|.+.|++++|+..++++.... +.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCH
Confidence 3445566666666666666665432 45566666666666666666666666666654 44555666666666666666
Q ss_pred HHHHHHHHHHHHc
Q 009025 279 SEAEAMFNEMLEA 291 (546)
Q Consensus 279 ~~A~~~~~~m~~~ 291 (546)
++|...|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666653
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0056 Score=53.70 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
.+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..... +-+...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 344444455555555555555555544322111 2345555555555566666666655555532 234444555555
Q ss_pred HHHhcCCH
Q 009025 271 ICSCRGKV 278 (546)
Q Consensus 271 ~~~~~g~~ 278 (546)
.|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 55555543
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.53 E-value=0.0043 Score=50.33 Aligned_cols=97 Identities=8% Similarity=0.014 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS--PNWNTYAS 196 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ 196 (546)
++..+...+.+.|++++|.+.|+.+.+.. |+ ...+..+..++.+.|+++.|.+.|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 45566667777788888888887776542 22 345566777778888888888888877764211 12455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 197 LLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
+..++.+.|+.++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7777777888888888888777764
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0044 Score=59.02 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 236 (546)
+|..++..+-+.+..+.|..+|.+.++.+. .+..+|.....+-.+ .++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455566666666666666666666654321 122333333333222 34444566666666554 333556666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 237 ADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
...++.+.|..+|++....- .++ ...|...++.=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l--~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSL--PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTS--SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665441 221 13555556655666666666666655554
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.004 Score=54.38 Aligned_cols=94 Identities=17% Similarity=0.117 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
...+..+...+...|++++|+..|++.......+ ...+|..+...+...|++++|++.+++..... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 3445555556666666666666666665442221 12356666666667777777777776666543 3334445555
Q ss_pred HHHHH-------hcCCHHHHHHHHH
Q 009025 269 ITICS-------CRGKVSEAEAMFN 286 (546)
Q Consensus 269 i~~~~-------~~g~~~~A~~~~~ 286 (546)
...+. ..|++++|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 55555 5555554444443
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.003 Score=62.36 Aligned_cols=92 Identities=13% Similarity=-0.033 Sum_probs=66.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 009025 163 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 242 (546)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 242 (546)
...+...|+++.|+++|++.++... -+...|..+..+|.+.|++++|+..++++.+... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 4456667788888888888777532 3566777777778888888888888887777642 2566777777778888888
Q ss_pred HHHHHHHHHHHhCC
Q 009025 243 DEAFEIFEDMKSSE 256 (546)
Q Consensus 243 ~~A~~~~~~m~~~~ 256 (546)
++|+..|++.....
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877653
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.005 Score=58.83 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHh
Q 009025 240 GYTDEAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-----PNLF-VLTSLIQCYGK 309 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~ 309 (546)
|++++|++.|++..+. +...--..++..+...+.+.|++++|.++|+++...... .+.. .|-..+-++..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 5566666666554432 100001223445556666666666666666666543221 1111 12223334555
Q ss_pred cCChhHHHHHHHHhhh
Q 009025 310 AQRTDDVVRALNRLPE 325 (546)
Q Consensus 310 ~g~~~~A~~~~~~m~~ 325 (546)
.|+...|.+.|++...
T Consensus 209 ~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 209 MGDYVAARKALERYCS 224 (282)
T ss_dssp TT-HHHHHHHHHHHGT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5666666666666653
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.43 E-value=0.00037 Score=52.84 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=7.8
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~ 251 (546)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33333344444444433333
No 166
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.42 E-value=0.0016 Score=62.23 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-----CCH
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEML----EAGFE-PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-----PDD 332 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~ 332 (546)
..|..|.+.|.-.|+++.|+...+.=+ +.|-+ .....+..+.+++.-.|+++.|.+.|+......+. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456677777777788888877665422 22211 12345667777788888888888887765422111 122
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHH
Q 009025 333 RFCGCLLNVMTQTPK-EELGKLVE 355 (546)
Q Consensus 333 ~t~~~ll~~~~~~g~-~~a~~~~~ 355 (546)
..+.+|.+.|.-... +.|+.++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334445555554444 44544443
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.39 E-value=0.00039 Score=52.72 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHHhCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 99 AGNVEMAFGLYDRARNEKWR-IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 99 ~g~~~~A~~l~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
.|+++.|+.+|+.+...... ++...+..+..+|.+.|++++|+.+++. .+.+ ..+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666654221 1333444456666666666666666655 2211 1122333344555666666666666
Q ss_pred HHHH
Q 009025 178 IYKE 181 (546)
Q Consensus 178 ~~~~ 181 (546)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.38 E-value=0.0096 Score=52.19 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 197 (546)
....+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 444677788888888999999999998876532222 3577788888888999999999988888753 2245666677
Q ss_pred HHHHHhcCChHHHHHH
Q 009025 198 LRAYGRARYGEDTLSV 213 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~ 213 (546)
..+|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777775544433
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.004 Score=59.25 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+.- ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 344445555555555555555555543211 112222222222 111333444555555544432 3344444444555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNL----FVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+.+.|+.+.|..+|++.... + +.. ..|...++-=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555544432 1 111 2444444444444444444444444443
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.36 E-value=0.016 Score=59.92 Aligned_cols=147 Identities=9% Similarity=-0.003 Sum_probs=88.0
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 009025 186 GLSPNWNTYASLLRAYGRA-----RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV--------GYTDEAFEIFEDM 252 (546)
Q Consensus 186 g~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m 252 (546)
+.+.|...|...+++.... ++.+.|..+|++..+.... ....|..+..++... +++..+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445677777777765432 2356788888888776322 244444443333221 1223334444443
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
........+...|..+.-.....|++++|...+++..+.+ |+...|..+...|...|+.++|.+.|++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 3321113455667777666666788888888888877744 5777777778888888888888888877765 34555
Q ss_pred HHHHH
Q 009025 333 RFCGC 337 (546)
Q Consensus 333 ~t~~~ 337 (546)
.||..
T Consensus 487 pt~~~ 491 (517)
T PRK10153 487 NTLYW 491 (517)
T ss_pred chHHH
Confidence 45443
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.36 E-value=0.0068 Score=50.96 Aligned_cols=89 Identities=8% Similarity=-0.037 Sum_probs=46.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
.-+...|++++|.++|+.+...... +..-|-.|..++-..|++++|+..|....... +-|...+-.+..++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCH
Confidence 3344555555555555555544322 34444455555555555555555555555544 34445555555555555555
Q ss_pred HHHHHHHHHHHH
Q 009025 279 SEAEAMFNEMLE 290 (546)
Q Consensus 279 ~~A~~~~~~m~~ 290 (546)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.34 E-value=0.0067 Score=50.98 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
....-.+..-+...|++++|.++|+.+...+ +-+..-|-.|.-++-..|++++|+..|......++. |...+-.+..
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 4445556667788999999999999988765 567778888999999999999999999998887653 6788888899
Q ss_pred HHHhcCChhHHHHHHHHhhh
Q 009025 306 CYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~ 325 (546)
++...|+.+.|.+.|+..+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999887764
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.31 E-value=0.0086 Score=52.26 Aligned_cols=113 Identities=8% Similarity=-0.009 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHH-hCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 009025 102 VEMAFGLYDRAR-NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP--NMITYNNLLDTMGRAKRPWQVKTI 178 (546)
Q Consensus 102 ~~~A~~l~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~ 178 (546)
+..+...+..+. ..+-.-....|..+...+...|++++|+..|+........+ ...+|..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444445553 33222345567778888888899999999999987653222 234788888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH-------hcCChHHHHHHHH
Q 009025 179 YKEMTDNGLSPNWNTYASLLRAYG-------RARYGEDTLSVYR 215 (546)
Q Consensus 179 ~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~~~A~~~~~ 215 (546)
++...... +....++..+...|. +.|+++.|...++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 98888752 223455666666665 5566654444444
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.29 E-value=0.11 Score=48.26 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=32.3
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAF---STLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.+.|++++|...|+.+...-... .... -.++.+|.+.+++++|...|++..+.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 36677777777777776642221 2222 23456666777777777777777665
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=0.015 Score=55.59 Aligned_cols=145 Identities=14% Similarity=0.194 Sum_probs=82.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEA----GFEPN--LFVLTSLI 304 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li 304 (546)
.+..|...|++..|-+++.++ ...|... |++++|.+.|++..+. + .+. ...+..+.
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 334455666666665555544 4566666 8899999998887642 2 111 34567778
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCC-----CHH-HHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh-----HHHHHHH
Q 009025 305 QCYGKAQRTDDVVRALNRLPELGITP-----DDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-----YVVKLLL 372 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~-t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~-----~~~~~L~ 372 (546)
..+.+.|++++|+++|++....-... +.. .|...+-++...|+ ..|.+.++......|... .++.-|+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 88999999999999999987643221 111 22223334455667 788888887776655432 2445555
Q ss_pred Hhhhhh-cchHHHHHHHHHhcc
Q 009025 373 EEQDIE-GDFKKEATELFNSIS 393 (546)
Q Consensus 373 ~~~~~~-g~~~~~A~~~~~~~~ 393 (546)
.++-.. .+.++++..-|+.+.
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHhCCHHHHHHHHHHHcccC
Confidence 554332 223455555555543
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.27 E-value=0.019 Score=46.50 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=26.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
++-..|+.++|+.+|++....|...+ ...+-.+...+...|++++|+.+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555444322 12333344455555555555555555444
No 177
>smart00463 SMR Small MutS-related domain.
Probab=97.26 E-value=0.002 Score=48.23 Aligned_cols=76 Identities=32% Similarity=0.543 Sum_probs=59.9
Q ss_pred eeecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeccccccc-chhHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009025 441 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS-DKGLASVFESHLKELNAPFHDSPDKVGWF 519 (546)
Q Consensus 441 ~~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~l~~~f~~~~~~~G~~ 519 (546)
|.+++|+++.++|..++..|+....+ .+ .+..+.|.||.|.|+.. ...+...+...+....-+|.+. .|.|.+
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~---~~--~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~~ 75 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARL---KG--LEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEE-GNSGVL 75 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHH---cC--CCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCC-CCCeEE
Confidence 67899999999999999998887764 33 22468999999999863 2457888888888777777664 899998
Q ss_pred EEe
Q 009025 520 LTT 522 (546)
Q Consensus 520 ~~~ 522 (546)
+..
T Consensus 76 ~v~ 78 (80)
T smart00463 76 VVK 78 (80)
T ss_pred EEE
Confidence 864
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.24 E-value=0.059 Score=50.03 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009025 268 MITICSCRGKVSEAEAMFNEMLEA--GFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 321 (546)
+.+.|.+.|.+..|..-|+.+++. +..........++.+|...|..++|..+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334455555555555555555442 111122333444455555555555544433
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.033 Score=57.66 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
+...|.++.-.....|++++|...+++..... |+...|..+...|...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34555555555555666666666666666643 45666666666666666666666666666553
No 180
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.12 Score=47.00 Aligned_cols=142 Identities=14% Similarity=0.154 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH---
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI--- 269 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li--- 269 (546)
+.+.++..+.-.|.+.-...++.+.++...+.+......|.+.-.+.|+.+.|...|++..+... +.|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 45566777777788888888888888877677888888888888889999999999887776543 55555555443
Q ss_pred --HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 009025 270 --TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338 (546)
Q Consensus 270 --~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 338 (546)
..|.-.+++..|...|++....+.. |....|.-.-+..-.|+..+|++.++.|.+. .|...+-+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 3455667788888888887765433 5555555444555568888888888888763 4555444433
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.02 E-value=0.0084 Score=55.33 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=41.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 282 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 282 (546)
+.+++.+|+..|.+.++.... |.+-|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++++|.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHHHHH
Confidence 444555555555555544222 44444444555555555555555554444432 223444555555555555555555
Q ss_pred HHHHHHHH
Q 009025 283 AMFNEMLE 290 (546)
Q Consensus 283 ~~~~~m~~ 290 (546)
+.|++.++
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55554444
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.99 E-value=0.19 Score=43.16 Aligned_cols=138 Identities=11% Similarity=0.068 Sum_probs=83.5
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHH
Q 009025 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVLT 301 (546)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~ 301 (546)
.|++..--.|..++...|+..+|...|++... |...-|......+.++....+++..|...++++.+.... .+..+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45666666677777777777777777777664 334667777777777777777777777777776654210 1223344
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCC
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-----EELGKLVECVEKSNSK 363 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~a~~~~~~~~~~~~~ 363 (546)
.+...|...|++.+|...|+..... -|+...-......+.+.|. .+...+++.+.+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence 5566677777777777777777763 3444433333334444553 3333455555555443
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.99 E-value=0.082 Score=47.69 Aligned_cols=54 Identities=20% Similarity=0.368 Sum_probs=32.5
Q ss_pred hhcCCHHHHHHHHHHHHhCC--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 97 TRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.+.|++++|...|+.+...- -+--..+.-.++.++.+.|+++.|...|++..+.
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36777777777777776531 1222334555666777777777777777776654
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.99 E-value=0.0026 Score=45.77 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=39.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 162 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 162 (546)
+.|++++|+.+|+.+....+. +...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 566777777777777665333 6666667777777777777777777777665 3554444433
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.05 Score=49.25 Aligned_cols=140 Identities=9% Similarity=0.058 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH----
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL---- 233 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li---- 233 (546)
..+.++..+...|.+.-...++.++++...+-+......|++.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556777777788888899999999997766788889999999999999999999999877654444555544443
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 234 -AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 234 -~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
..|.-.+++.+|...|.++...+ ..|.+.-|.-.-...-.|+..+|.+.++.|++.. |...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 44556778899999999988776 4566666654445555789999999999999864 4443333
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.98 E-value=0.2 Score=43.07 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 189 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 189 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
|++..--.|..+..+.|+..+|...|++...--+.-|....-.+..+....+++.+|...++++.+...-.-...+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 33433444444444444444444444444432223344444444444444444444444444444321101111223334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+.|...|+..+|+.-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4444445555555555554444
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.93 E-value=0.068 Score=43.24 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 131 YGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 131 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
+-..|+.++|+.+|++..+.|.... ...+-.+...+...|++++|..++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555544443322 12333344444444555555555544443
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.13 Score=52.81 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL---- 300 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---- 300 (546)
|....-.+..++...|.-++|.+.|-+.. .|- ..+..|...+++.+|.++-+...- |.+.+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~ 916 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQ 916 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHH
Confidence 45556667777777777777777665432 221 234566666777777666544322 222221
Q ss_pred ----------HHHHHHHHhcCChhHHHHHHHHhh
Q 009025 301 ----------TSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 301 ----------~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
.--|..+.++|+.-+|.+++.+|.
T Consensus 917 aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 917 AAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 112444566666666666666665
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.012 Score=54.31 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=71.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChh
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 314 (546)
+.+.+++.+|+..|.+.+... +-|.+-|..=..+|.+.|.++.|++-.+..+..+ |. ..+|..|-.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 456778888888888887764 5677777777888888888888887777776632 33 457777788888888888
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009025 315 DVVRALNRLPELGITPDDRFCGCLLN 340 (546)
Q Consensus 315 ~A~~~~~~m~~~~~~p~~~t~~~ll~ 340 (546)
+|++.|++.++ +.|+-.+|-.=+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 88888877776 5677666554443
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.87 E-value=0.097 Score=47.19 Aligned_cols=62 Identities=6% Similarity=-0.039 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009025 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGV--KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185 (546)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 185 (546)
+-.....+...|++.+|...|+.+...-. +--....-.++.++.+.|+++.|...++++++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444556677888888888888876521 112334556677778888888888888887764
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.85 E-value=0.0059 Score=43.88 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=21.5
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.|++++|+++|+++...... +...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444443211 334444444444444444444444444444
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.093 Score=48.85 Aligned_cols=117 Identities=10% Similarity=0.052 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHH
Q 009025 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---RPWQVKTI 178 (546)
Q Consensus 102 ~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~ 178 (546)
++....-++.-.+.++. |...|-.|..+|...|+++.|..-|.+..+.. .+|...+..+..++.... +..++.++
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44444444444444333 77788888888888888888888888877663 345666666666544332 34567777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 179 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
|++++.... -|..+...|...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777777532 355566666667777788888888887777663
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.82 E-value=0.0071 Score=43.05 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=20.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|..+|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444332 2233334444444444444444444444443
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.80 E-value=0.0067 Score=43.77 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEML 289 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 289 (546)
.+|..+...+...|++++|+..|++..+.. +-+...|..+..+|...| ++++|.+.|++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444432 233444444444444444 3444444444443
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.74 E-value=0.0057 Score=43.54 Aligned_cols=57 Identities=21% Similarity=0.150 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+...+.+.|++++|.+.|+++++.... +...+..+..++...|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677888888888888888876532 567777888888888888888888888875
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.65 E-value=0.7 Score=44.59 Aligned_cols=297 Identities=13% Similarity=0.040 Sum_probs=181.7
Q ss_pred HHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHH
Q 009025 124 FSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT--MGRAKRPWQVKTIYKEMTDNGLSPNWN--TYASL 197 (546)
Q Consensus 124 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~l 197 (546)
|..|-.++.- .|+-..|.++-.+.... +.-|..-.-.|+.+ -.-.|+++.|.+-|+-|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4555555544 46777777766654322 23444444455544 34469999999999999863 2211 12223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHH--
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS--SMITICS-- 273 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--~li~~~~-- 273 (546)
.-.-.+.|+.+.|..+-+..-+.-.. =...+.+.+...+..|+++.|+++++.-....++.++..--. .|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33335678889998888887665322 357788999999999999999999998777665566544222 2222211
Q ss_pred -hcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH--HH
Q 009025 274 -CRGKVSEAEAMFNEMLEAGFEPNLFVL-TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EE 349 (546)
Q Consensus 274 -~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~ 349 (546)
-..+...|...-.+..+ +.||.+-- ..-..++.+.|+..++-.+++.+-+....|+ ..... ...+.|+ ..
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY--~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLY--VRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHH--HHhcCCCcHHH
Confidence 12334445554444443 45664332 3345678899999999999999987654444 33322 3455665 33
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc-ccCccchhhHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 009025 350 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVNL-NLLENACKLLELGLTL 427 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 427 (546)
-.+-.+.+....|+.....-.+.++-...|+. ..|..--+.. ...|....|..|.+.-.-. |+-.++...+-+..+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~-~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEF-SAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccch-HHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 34445556666776665554555544444533 4444333332 2345667888888876554 9999999999988765
Q ss_pred ccccC
Q 009025 428 EVYTD 432 (546)
Q Consensus 428 g~~p~ 432 (546)
--.|.
T Consensus 393 PrdPa 397 (531)
T COG3898 393 PRDPA 397 (531)
T ss_pred CCCCc
Confidence 44443
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.087 Score=53.62 Aligned_cols=217 Identities=18% Similarity=0.167 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 197 (546)
++-.++..=.+|.+-.+ +-+.+.-+++|+++|-.|+... +...|+-.|++.+|.++|.+ .|.+ |-.
T Consensus 597 eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRA 664 (1081)
T KOG1538|consen 597 EALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRA 664 (1081)
T ss_pred hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhH
Confidence 34445555667776655 3445566778888887788765 44557778889999888864 3433 234
Q ss_pred HHHHHhcCChHHHHHHHHH-------HH--Hc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhCCC--CC
Q 009025 198 LRAYGRARYGEDTLSVYRE-------MK--EK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFED------MKSSEN--CQ 259 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~-------m~--~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~~~--~~ 259 (546)
+.+|.....+|.|.+++.. |. ++ ....|..-=.+....+...|+.++|..+.-+ +.+.+. -.
T Consensus 665 lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~ 744 (1081)
T KOG1538|consen 665 LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK 744 (1081)
T ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch
Confidence 4555555555555555421 11 10 0000000001223444456666666554321 111110 13
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH------
Q 009025 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR------ 333 (546)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------ 333 (546)
.+..+...+...+.+...+..|.++|.+|-+. ..+++.....++|++|+.+-+...+ ..||..
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQW 813 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHH
Confidence 45556666666667778888999999988652 3466778889999999999888765 344432
Q ss_pred -----HHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 334 -----FCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 334 -----t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
-|.-.-.++.+.|. .||.++++++..
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 23334456666777 777777766543
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.12 Score=48.15 Aligned_cols=99 Identities=12% Similarity=0.097 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
|...|-.|...|...|+++.|..-|....+.. .++...+..+..++.... +-.++.++|++++..+.. |+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 66777777777777777777777777776654 455555555555544332 345677777777765432 555666
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666777777777777777777764
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.37 Score=46.77 Aligned_cols=220 Identities=11% Similarity=-0.012 Sum_probs=111.3
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhH
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 174 (546)
+-+..++..|+..+....+..+. ++.-|..-...+...|++++|.-=.+.-.+. +|. ...+.-.-.++...++..+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHH
Confidence 33777889999999988887544 4555666666666777777776655554432 111 1123333333444444444
Q ss_pred HHHHHHH---------------HHHCC-CCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH--H
Q 009025 175 VKTIYKE---------------MTDNG-LSPNWNTYASL-LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--M 235 (546)
Q Consensus 175 a~~~~~~---------------m~~~g-~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~ 235 (546)
|.+.++. ..... -+|...++-.| ..++.-.|+.++|..+--...+.. ....+..+++ +
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLC 212 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccc
Confidence 4433331 11110 01222333322 234455677777776665555542 1223333333 3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-------------ITICSCRGKVSEAEAMFNEMLEA---GFEPNLFV 299 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~ 299 (546)
+.-.++.+.|...|++.++.+ |+...-..+ .+...+.|.+..|.+.|.+.+.. +..++...
T Consensus 213 ~yy~~~~~ka~~hf~qal~ld---pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLD---PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred cccccchHHHHHHHhhhhccC---hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 334566777777777776643 443322111 12234455566666666555532 23334444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
|........+.|+.++|+.--++..
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhh
Confidence 4444445555555666555555544
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.58 E-value=0.019 Score=55.09 Aligned_cols=268 Identities=16% Similarity=0.061 Sum_probs=162.5
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHH--HHC--CCC-CCHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEM--KAI--GVK-PNMITYNN 161 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~~-p~~~~~~~ 161 (546)
.....+|+.|+...-+.+|+...+-|.. |. ..|..|..+|.-.+++++|+++...= ..+ |-+ -...+...
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 3445677999999999999999987744 43 35667778888888999998875431 111 100 01122233
Q ss_pred HHHHHHhcCChhHHHHHH----HHHHHCCCC-CCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 009025 162 LLDTMGRAKRPWQVKTIY----KEMTDNGLS-PNWNTYASLLRAYGRARY--------------------GEDTLSVYRE 216 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~----~~m~~~g~~-p~~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~ 216 (546)
|.+.+--.|.+++|.-.- +...+.|-. .....+..+...|...|+ ++.|.++|.+
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 444444455666654321 112222211 123445556666655542 3445555543
Q ss_pred HHH----cCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 217 MKE----KGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMK----SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 217 m~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
-.+ .|-. .-...|..|...|.-.|+++.|+...+.-. +-|.-......+..|.+++.-.|+++.|.+.|+.
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 221 1100 012356666666677789999987765432 2221122345788899999999999999999886
Q ss_pred HHH----cCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh----C-CCCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 288 MLE----AGF-EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE----L-GITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 288 m~~----~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
-.. .|- .....+...|.+.|.-..++++|+.++.+-.. . +..-....|-+|.+++...|. ++|..+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 542 221 12345566788888888899999998876542 1 122244678889999999888 888877665
Q ss_pred HHH
Q 009025 357 VEK 359 (546)
Q Consensus 357 ~~~ 359 (546)
..+
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 443
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.54 E-value=0.64 Score=44.95 Aligned_cols=101 Identities=11% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
|.-+...|+...|.++-.+. . .||..-|-..|.+++..++|++-.++... +..++-|..++..|.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCC
Confidence 33334445544444443332 1 23555555555555555555544443221 1112445555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
..+|..++.++ .+..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 55555554441 112334445555555555443
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.54 E-value=0.013 Score=42.18 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTD 184 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~ 184 (546)
++.+|..+...+.+.|++++|+..|++..+.. +-+...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34555566666666666666666666665543 223445555555666665 46666666655544
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.42 E-value=0.11 Score=48.77 Aligned_cols=89 Identities=11% Similarity=-0.010 Sum_probs=36.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC----HHHHHHHHHHHhcCC
Q 009025 273 SCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLLNVMTQTP 346 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g 346 (546)
.+.|++++|...|+.+++...... ...+..+...|...|++++|...|+.+.+.- |+ ...+..+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHHHHHHHHHHHcC
Confidence 334444444444444444321110 1233444444445555555555555444321 11 122222333333444
Q ss_pred H-HHHHHHHHHHHHcCCC
Q 009025 347 K-EELGKLVECVEKSNSK 363 (546)
Q Consensus 347 ~-~~a~~~~~~~~~~~~~ 363 (546)
+ ++|.+.++.+.+..|+
T Consensus 232 ~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 4 5555555554444443
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.34 E-value=0.94 Score=44.38 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=39.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIG---VKPNMITYNNLLDTMGR---AKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
.++-.|-...+++..+++++.|...- +.-+..+-....-++.+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445666666666666666665431 11111222223334444 5666666666666544444455666665555
Q ss_pred HH
Q 009025 200 AY 201 (546)
Q Consensus 200 ~~ 201 (546)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 205
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.33 E-value=0.032 Score=50.98 Aligned_cols=105 Identities=16% Similarity=0.302 Sum_probs=66.2
Q ss_pred ccCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 009025 118 RIDPNAFSTLIKLYGTA-----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN 192 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 192 (546)
+.|-.+|.+.+..+... +.++-....++.|.+.|+..|..+|+.||+.+-+..-. |. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-H
Confidence 44666777777666543 45666777788999999999999999999876543221 11 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
.+....-.|-+ +-+-+++++++|...|+-||..+-..|+.++++.+.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11112112211 123366777777777777777777777777766664
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.33 E-value=0.078 Score=49.69 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=7.3
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 009025 236 CADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~ 253 (546)
+...|+.++|.++|+.+.
T Consensus 227 ~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 227 MQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 333444444444444433
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.26 E-value=0.11 Score=42.53 Aligned_cols=52 Identities=6% Similarity=-0.022 Sum_probs=30.7
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
..|+..+..+++.+|+.+|++..|+++++...+...++.+..+|..|++-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666666666666666666666666665554434555566666655443
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.24 E-value=0.067 Score=43.76 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHh
Q 009025 186 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCAD 238 (546)
Q Consensus 186 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~ 238 (546)
.+.|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35577888888888888888888888888876643 566677778877765543
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.19 E-value=0.038 Score=46.84 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLFV 299 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 299 (546)
+...++..+...|++++|.++.+.+.... +.|...|..+|.+|...|+...|.++|+++.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44455555666666666666666666654 45666666666666666666666666665542 355555433
No 210
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=0.8 Score=47.43 Aligned_cols=177 Identities=10% Similarity=0.102 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009025 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSP--------NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223 (546)
Q Consensus 153 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p--------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 223 (546)
.|.+..|..|.......-+++-|+..|-+.... |++. +...-.+=|.+| -|++++|+++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 578888887777666666666666665444321 2211 111112223333 37888888888777665
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009025 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 303 (546)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 303 (546)
| ..|..+.+.|++-...++++.--....-.--...|+.+...+.....+++|.+.|..-.. -...
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2 235556677777666666543211100011234667777777777777777776654322 1123
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHH
Q 009025 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLV 354 (546)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~ 354 (546)
+++|.+..++++...+-..+. -|....-.+..++...|. ++|.+.+
T Consensus 829 ~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHH
Confidence 455555555554444433332 233344445556666666 5555543
No 211
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.12 E-value=0.084 Score=48.34 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----------------QRTDDVVRALNRLPELGITPDDRFCGCLLNV 341 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 341 (546)
++-....++.|.+.|+..|..+|+.||+.+-+. .+-+-++.++++|...|+.||..+-..|+++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 333334444455555555555555555443221 2234578899999999999999999999999
Q ss_pred HhcCCH--HHHHHHHHHHHH
Q 009025 342 MTQTPK--EELGKLVECVEK 359 (546)
Q Consensus 342 ~~~~g~--~~a~~~~~~~~~ 359 (546)
+.+.+. .+..++.--|-+
T Consensus 168 FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 168 FGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hccccccHHHHHHHHHhhhh
Confidence 988887 555555444433
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.09 E-value=1.6 Score=42.96 Aligned_cols=125 Identities=11% Similarity=0.023 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHhhhhh
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 378 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 378 (546)
|-..|+.-.+..-++.|..+|-+..+.| +.++..++++++.-++......|.++|+.-.+.-++....++-....+...
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 4445555566666788888888888877 566777888888877766558888888877776666665553333333344
Q ss_pred cchHHHHHHHHHhccc----CccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 379 GDFKKEATELFNSISK----DVKKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 379 g~~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
++ -+.|..+|+.... ..-..+|..+|+--..-|+...+..+=++|.
T Consensus 480 nd-e~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 480 ND-EENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred Cc-HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 53 3778888885332 2224588888888888888877766666654
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.00 E-value=0.078 Score=44.89 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCcCHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK-----EKGMQLSVTL 228 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~ 228 (546)
+...++..+...|+++.|.++.+.+.... +.|...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44556666777777777777777777653 3366777777777777777777777777654 3477776554
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.89 E-value=0.03 Score=41.47 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 009025 229 YNTLLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~ 251 (546)
|+.+...|...|++++|+..|++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444443
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.87 E-value=0.038 Score=40.25 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=24.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444444222 344444444444444444444444444444
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.80 E-value=1.4 Score=39.67 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCH-HH
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EE 349 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~-~~ 349 (546)
+...++.+.+...+.+............+..+...+...++++.|...+...... .|+ ...+..+...+...+. ++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHH
Confidence 4444555555555555444211112344444444555555555555555555432 122 2222223333333333 55
Q ss_pred HHHHHHHHHHcCCC
Q 009025 350 LGKLVECVEKSNSK 363 (546)
Q Consensus 350 a~~~~~~~~~~~~~ 363 (546)
+...+.......+.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 55555555554443
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.79 E-value=0.047 Score=39.74 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=27.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.|.+.+++++|.++++.+...+ +.+...+......+.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555555555555443 33444444455555555555555555555544
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.70 E-value=0.039 Score=40.83 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LS-VTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
.+|+.+...|...|++++|+..|++..+. |-. ++ ..+++.+...|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666666777777777766665532 111 11 3456666666666677777766666654
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.68 E-value=2.2 Score=41.30 Aligned_cols=288 Identities=14% Similarity=0.110 Sum_probs=174.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChh
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMIT--YNNLLDTMGRAKRPW 173 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~ 173 (546)
-.|+-..|.++-.+..+. +.-|....-.|+.+-. -.|+++.|.+-|+-|... |.... ...|.-..-+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 568888888877765532 2335555555555443 469999999999999863 33221 233444456788989
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHH--HHHHHHHHHH---hcCCHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVT--LYNTLLAMCA---DVGYTDEAFE 247 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~--~~~~li~~~~---~~g~~~~A~~ 247 (546)
.|...-++.-..-. --.....+.+...+..|+++.|+++++.-+... +.++.. .-..|+.+-. -.-+...|..
T Consensus 172 aAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88888877765422 134678889999999999999999998766442 233332 1222222211 1234555666
Q ss_pred HHHHHHhCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-
Q 009025 248 IFEDMKSSENCQPDSWT-FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE- 325 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 325 (546)
.-.+..+. .||..- -..-.+++.+.|++.++-.+++.+-+....|++. ..|.+..--|.++.-+++..+
T Consensus 251 ~A~~a~KL---~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 251 DALEANKL---APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHhhc---CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHHHHHHHHHHH
Confidence 55555543 555443 3345678899999999999999998876666542 234333334455555555442
Q ss_pred CCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhh-hhhcchHHHHHHHHHhcccCccchhh
Q 009025 326 LGITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ-DIEGDFKKEATELFNSISKDVKKAYC 401 (546)
Q Consensus 326 ~~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~-~~~g~~~~~A~~~~~~~~~~~~~~~~ 401 (546)
..++||. .....+..+-...|+ ..|..--+...+..|....+ -+|.+.- ...||. .++...+.+....|-.+.|
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~-lLlAdIeeAetGDq-g~vR~wlAqav~APrdPaW 398 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAY-LLLADIEEAETGDQ-GKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHH-HHHHHHHhhccCch-HHHHHHHHHHhcCCCCCcc
Confidence 2356655 455566666666776 55555555556666654433 3444332 333644 7777776655443333333
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=95.62 E-value=0.87 Score=38.74 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=56.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009025 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312 (546)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 312 (546)
..-+...|++++|..+|.-+...+ .-+..-|..|...|-..+++++|...|......+. -|...+-....+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 334456677777777777766554 34455556666666667777777777766554332 234445555667777777
Q ss_pred hhHHHHHHHHhhh
Q 009025 313 TDDVVRALNRLPE 325 (546)
Q Consensus 313 ~~~A~~~~~~m~~ 325 (546)
.+.|...|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776665
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.58 E-value=1.1 Score=37.47 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=8.2
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~ 251 (546)
++..|.+.+.++++..++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 33444444444444444433
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=95.55 E-value=0.48 Score=40.28 Aligned_cols=87 Identities=11% Similarity=0.007 Sum_probs=66.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (546)
+...|++++|..+|.-+...+.- +..-|..|..++-..+++++|+..|......+ .-|...+-.....|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHH
Confidence 35678999999999887765433 55667777788888889999999888876654 3444556667788888899999
Q ss_pred HHHHHHHHHH
Q 009025 281 AEAMFNEMLE 290 (546)
Q Consensus 281 A~~~~~~m~~ 290 (546)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9998888876
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.53 E-value=0.36 Score=47.96 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=40.4
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.|+.+.+..-+...++ +.|++++|+..|++.++.. |+. .+|..+..+|...|++++|++.|++..+.
T Consensus 71 dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555443433333 6677777777777766653 332 34666777777777777777777776653
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.52 E-value=2.8 Score=41.38 Aligned_cols=145 Identities=18% Similarity=0.250 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH-HHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF-SSMI 269 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~li 269 (546)
.+|...|+.-.+..-++.|..+|-+..+.| +.+++..++++|.-++ .|+...|.++|+.-... -||...| .-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 455666666667777777777777777766 4566777777776555 45666777777764443 3444443 3445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009025 270 TICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343 (546)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 343 (546)
..+...++-+.|..+|+...++ +..+ ...|..+|+-=..-|++..+..+-++|.+ +-|...+...+..-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 5566677777777777754432 1112 35666777766667777777766666665 3455444444444443
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.50 E-value=0.37 Score=47.88 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=57.3
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 185 (546)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999998886 4664 35888999999999999999999998874
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.19 E-value=3.5 Score=40.49 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 160 NNLLDTMGRAKRPWQVKTIYKEMTDNG---LSPNWNTYASLLRAYGR---ARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
..++-+|-...+++...++.+.|.... +.-...+--...-++.+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556777788888888888887641 11122222233345555 788888888888865555556777777766
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHh
Q 009025 234 AMCAD---------VGYTDEAFEIFEDMKS 254 (546)
Q Consensus 234 ~~~~~---------~g~~~~A~~~~~~m~~ 254 (546)
..|-. ....++|+..|.+.-.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 65532 1134555555555443
No 227
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.18 E-value=1.8 Score=37.14 Aligned_cols=135 Identities=14% Similarity=0.133 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 141 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
++.++.+.+.+++|+...|..+++.+.+.|++... ..++..++-+|.......+-.+. +....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 34455556667777777888888888877775543 34444555555554444443332 2233444444444443
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 221 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 221 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
=...+..++..+...|++-+|.++.+...... .. ....++.+-.+.+|...-..+|+-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~--~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD--SV---PARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc--cC---CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11245666777777888888888777654322 12 223455555555665554445444443
No 228
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.15 E-value=1.6 Score=36.42 Aligned_cols=85 Identities=11% Similarity=0.175 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 204 (546)
..++..+.+.+.......+++.+...+ ..+...++.++..|++.+. ....+.++. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555566666666666666555 2455666666666665432 222333321 1 1223334456666666
Q ss_pred CChHHHHHHHHHH
Q 009025 205 RYGEDTLSVYREM 217 (546)
Q Consensus 205 g~~~~A~~~~~~m 217 (546)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666666554
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.12 E-value=2.6 Score=38.63 Aligned_cols=52 Identities=8% Similarity=0.045 Sum_probs=22.2
Q ss_pred HcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 133 TAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 133 ~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
+.|++++|.+.|+.+...- -+-...+--.++-++.+.+++++|+...++.+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555544331 011122333344444445555555555544444
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.65 Score=43.83 Aligned_cols=154 Identities=7% Similarity=0.007 Sum_probs=95.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCHHH
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSVTLYNTLLAMCADVGYTDE 244 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 244 (546)
..|++.+|...++++++. .+.|...+.-.=++|.-.|+.+.-...++++... +++.....-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456667777777777764 4556667777777777777777777777766543 222223333344455567778888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 321 (546)
|++.-++..+.+ +.|...-.++...+--.|++.++.++..+-... +--.-...|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 888877777665 567777777777777777777777776543321 000011223333334556678888888876
Q ss_pred Hhh
Q 009025 322 RLP 324 (546)
Q Consensus 322 ~m~ 324 (546)
+=+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=3.1 Score=38.94 Aligned_cols=122 Identities=10% Similarity=0.022 Sum_probs=60.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 009025 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 244 (546)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 244 (546)
.....|++.+|..+|......... +...--.+..+|...|+.+.|..++..+...--........+-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566666666666666654221 3344455666666666666666666665533111111222222333344444443
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333331 22555555556666666666666655555443
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.00 E-value=0.75 Score=46.65 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 201 (546)
.-.+.++..+-+.|..+.|+++-.+ .. .-.....+.|+++.|.++.++. .+...|..|.+..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 3355555555555555555554322 11 1233344555555555443221 2445555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 555555555555554321 3344444455555555555555544444
No 233
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=94.84 E-value=0.14 Score=38.42 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=49.0
Q ss_pred ecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccchhHHHHHHHHhhhcCCCCCC---------CC
Q 009025 443 LHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHD---------SP 513 (546)
Q Consensus 443 ~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~f~~---------~~ 513 (546)
+++|++....|...+..++....+ .+. ..+.|.||.|.|+-.. .+...+...|.+ +..+.. ..
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~---~~~---~~~~II~G~G~hS~~g-~Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~ 72 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQ---RGI---RELRIITGKGNHSKGG-VLKRAVRRWLEE-GYQYEEVLAYRDAEPED 72 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHH---TTH---SEEEEE--STCTCCTS-HHHHHHHHHHHH-THCCTTEEEEEE--CCC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHH---cCC---CEEEEEeccCCCCCCC-cHHHHHHHHHHh-hhccchhheeeecCCCC
Confidence 367888888888888776655543 332 4688999999999764 499999999988 555554 34
Q ss_pred CCcceEEEe
Q 009025 514 DKVGWFLTT 522 (546)
Q Consensus 514 ~~~G~~~~~ 522 (546)
.|.|.++..
T Consensus 73 g~~G~~~V~ 81 (83)
T PF01713_consen 73 GNSGATIVY 81 (83)
T ss_dssp TGGGEEEEE
T ss_pred CCCeEEEEE
Confidence 578888753
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.79 E-value=1.7 Score=44.78 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCc-----CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKG-MQL-----SVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSW 263 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~-----~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 263 (546)
+..++...+=.|+-+.+++.+.+..+.+ +.- -...|..++..++. ....+.|.++++.+... -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555555666666666666554432 110 01234444433333 34566777777777664 34544
Q ss_pred HHH-HHHHHHHhcCCHHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 264 TFS-SMITICSCRGKVSEAEAMFNEMLEA--G-FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 264 ~~~-~li~~~~~~g~~~~A~~~~~~m~~~--~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
.|. .-.+.+...|++++|.+.|++.... . .+.....+--+.-++.-.++|++|...|.++.+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 443 3345566677777777777754421 1 1122334444555666677777777777777653
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.45 Score=46.24 Aligned_cols=78 Identities=14% Similarity=0.018 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 342 (546)
.+++.|...|.+.+++..|++.-++.+..+. .|+-..-.=..+|...|+++.|...|+.+++ +.|+......=+..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 3455666666666677766666666665443 2555555556666666777777777776665 455554444434333
Q ss_pred h
Q 009025 343 T 343 (546)
Q Consensus 343 ~ 343 (546)
.
T Consensus 335 ~ 335 (397)
T KOG0543|consen 335 K 335 (397)
T ss_pred H
Confidence 3
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.76 E-value=2.7 Score=42.19 Aligned_cols=159 Identities=11% Similarity=0.125 Sum_probs=81.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009025 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211 (546)
Q Consensus 132 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 211 (546)
-+..+...-+++-++..+. .||..+.-+++. --......+++++|++..+.|-. .+. +.......-
T Consensus 179 WRERnp~aRIkaA~eALei--~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~----~lg-------~s~~~~~~g 244 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEI--NPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEA----SLG-------KSQFLQHHG 244 (539)
T ss_pred HhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHH----hhc-------hhhhhhccc
Confidence 3445555555555555553 455433222221 12234467788888877664310 000 000000000
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 212 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
..++.+..+...+-..+-..+..++-+.|+.++|++.|++|.+.....-+......|+.++...+.+.++..++.+..+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11122222222222333344556666788888888888888765321224446677888888888888888888876543
Q ss_pred CCCC-CHHHHHHHH
Q 009025 292 GFEP-NLFVLTSLI 304 (546)
Q Consensus 292 ~~~p-~~~~~~~li 304 (546)
.... -...|+..+
T Consensus 325 ~lpkSAti~YTaAL 338 (539)
T PF04184_consen 325 SLPKSATICYTAAL 338 (539)
T ss_pred cCCchHHHHHHHHH
Confidence 2221 234555543
No 237
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.74 E-value=4.9 Score=39.89 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
..+..++....+.++..+|.+.+..+...+
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 367777788888888888887777665443
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=3.7 Score=38.43 Aligned_cols=145 Identities=11% Similarity=0.036 Sum_probs=79.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009025 130 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209 (546)
Q Consensus 130 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 209 (546)
.....|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456677777777777776553 223445556667777777777777777766543211112222233444444444444
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+.+.---|...-..|+..+.-.|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444443332 2255666666777777777777776666665543223344445555555554443
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.48 Score=46.03 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 009025 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ 375 (546)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~ 375 (546)
..+++.+.-+|.+.+++.+|+...++.++.+ .+|....-.=..+|...|+ +.|...|+++.+..|.+..+-.-|..+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3466777888889999999999888888753 3455555556777777788 8888888888888888766655555543
Q ss_pred hhhcchHHHHHHHHHhc
Q 009025 376 DIEGDFKKEATELFNSI 392 (546)
Q Consensus 376 ~~~g~~~~~A~~~~~~~ 392 (546)
-+.....+...++|..|
T Consensus 336 ~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33332333333444433
No 240
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.65 E-value=1.6 Score=41.80 Aligned_cols=128 Identities=13% Similarity=0.292 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH--cC----ChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCh
Q 009025 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT--AG----NFDGCLNVYEEMKAIGV---KPNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 102 ~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~ 172 (546)
+++.+.+++.+.+.|.+.+..+|-+....... .. ...+|.++|+.|++... .++...+..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44555666666666666666555543322222 12 23456666666665421 2333444444333 22222
Q ss_pred ----hHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCcCHHHHHH
Q 009025 173 ----WQVKTIYKEMTDNGLSPNW--NTYASLLRAYGRARY--GEDTLSVYREMKEKGMQLSVTLYNT 231 (546)
Q Consensus 173 ----~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~ 231 (546)
+.++.+|+.+.+.|+..+. .....++........ ..++.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3445556666655554322 222222222211111 2345555566666665554444443
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=94.44 E-value=4.1 Score=40.82 Aligned_cols=158 Identities=11% Similarity=0.122 Sum_probs=97.8
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHHHc-CCCcC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 009025 192 NTY--ASLLRAYGRAR-----YGEDTLSVYREMKEK-GMQLS-VTLYNTLLAMCAD---------VGYTDEAFEIFEDMK 253 (546)
Q Consensus 192 ~~~--~~ll~~~~~~g-----~~~~A~~~~~~m~~~-g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 253 (546)
..| ..++.+..... ..+.|+.+|.+.... .+.|+ ...|..+..++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55555554422 346778888888721 22333 3344433333221 234557777888888
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 254 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
+.+ +-|......+..+....|+++.|..+|++....+ || ...|......+.-+|+.++|.+.+++..+ ..|..
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~ 405 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRR 405 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchh
Confidence 777 6788888888888888888888999998888743 55 44555555566677888888888888654 23433
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHH
Q 009025 333 ---RFCGCLLNVMTQTPKEELGKLVE 355 (546)
Q Consensus 333 ---~t~~~ll~~~~~~g~~~a~~~~~ 355 (546)
.+....++.|...+-+++.+++-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 406 RKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred hHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 23333444555555566666543
No 242
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.36 E-value=5.3 Score=38.68 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=28.4
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 164 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 164 (546)
.+.|+.+.|..+++. +|++.- =+..+.+.|+.+.| +.+..+.| .||. +|..|+.
T Consensus 11 ~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 11 YEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred HHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 377888887776642 444432 23445556666655 34455544 3343 3444444
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.35 E-value=2.5 Score=43.49 Aligned_cols=181 Identities=14% Similarity=0.114 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHHHh----cCCh
Q 009025 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSP-----NWNTYASLLRAYGR----ARYG 207 (546)
Q Consensus 138 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p-----~~~~~~~ll~~~~~----~g~~ 207 (546)
.-..-+|.-+... ++| .+..++...+=.||-+.+++.+.+-.+.+ +.- -.-.|+.++..++. ....
T Consensus 174 ~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 174 YFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 3445566666654 233 34457777777788888888887766532 211 11345555555543 4567
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTL-LAMCADVGYTDEAFEIFEDMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 284 (546)
+.|.++++.+.++ -|+...|... .+.+...|++++|++.|++...... -......+-.+.-.+.-.+++++|.+.
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 8888999988876 4566555443 3566778999999999997654211 122344555666778888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHH-HHHhcCCh-------hHHHHHHHHhhh
Q 009025 285 FNEMLEAGFEPNLFVLTSLIQ-CYGKAQRT-------DDVVRALNRLPE 325 (546)
Q Consensus 285 ~~~m~~~~~~p~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~~ 325 (546)
|..+.+..- .+...|.-+.. ++...|+. ++|.++|.+...
T Consensus 328 f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999887532 23444544433 34556777 888888887753
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.35 E-value=1.5 Score=44.48 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=104.7
Q ss_pred HHHcCChHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009025 131 YGTAGNFDGCLNVYE--EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 208 (546)
Q Consensus 131 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 208 (546)
..-.|+++++.++.+ ++.. .+ ...-.+.++.-+-+.|..+.|+++-..-. .-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 334578888777765 2221 12 24557888888999999999988754321 2345667889999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
.|.++.++. .+...|..|.....+.|+++-|++.|++..+ |..|+-.|.-.|+.+.-.++.+..
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 998766543 2678999999999999999999999998653 567778888899998888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 289 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
..+|- +|....++...|+.++..+++.+-
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 76542 455566666778888888777654
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=4.1 Score=36.98 Aligned_cols=226 Identities=14% Similarity=0.106 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHhCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 102 VEMAFGLYDRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 102 ~~~A~~l~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
+.++.+....-... ++||- ..|..-..+|-...++++|...+.+..+- ..-|...|. ..+.++.|.-
T Consensus 9 i~ea~e~~a~t~~~-wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaam 79 (308)
T KOG1585|consen 9 ISEADEMTALTLTR-WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAM 79 (308)
T ss_pred HHHHHHHHHHHhhc-cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHH
Confidence 44444444433322 45554 34566667888888999998877776532 122322232 2334566777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-- 255 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 255 (546)
+.++|.+.. --+..|+--..+|..+|..+.|-..+++.-+. ..+-++++|+++|++....
T Consensus 80 Lake~~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 80 LAKELSKLS--EVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHh
Confidence 777776631 12456777888899999988887777765432 1233455555555543221
Q ss_pred -C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-
Q 009025 256 -E-NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELG- 327 (546)
Q Consensus 256 -~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 327 (546)
+ ...--...+..+-+.+.+..++++|...|.+-... .--++ ...|...|-.|....++..|...++.--..+
T Consensus 142 ~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 142 EDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred ccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 1 00111223444556677777777777666553321 01112 2335556666777788888888888743321
Q ss_pred --CCCCHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 328 --ITPDDRFCGCLLNVMTQTPKEELGKLV 354 (546)
Q Consensus 328 --~~p~~~t~~~ll~~~~~~g~~~a~~~~ 354 (546)
-.-|..+...|+.+|-....+++.++.
T Consensus 222 f~~sed~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 222 FLKSEDSRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred ccChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 122446777777777655445555544
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.11 E-value=4.7 Score=37.03 Aligned_cols=180 Identities=15% Similarity=0.184 Sum_probs=95.9
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKW--RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMITYNNLLDTMG 167 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~ 167 (546)
.....-.+.|++++|...|+.+....+ +-...+.-.++-++-+.+++++|+..+++....- -.|| .-|..-|.+++
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs 117 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Confidence 333334499999999999999987521 2245566677888889999999999999987753 2333 34555555544
Q ss_pred hc-------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 168 RA-------KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 168 ~~-------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
.- .|...+.+-+..|.+ +|.-|=...-..+|...+..+... =...=..+.+.|.+.|
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~ 181 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRG 181 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 22 222223333322221 111111112222233322222211 0001112345566667
Q ss_pred CHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 241 YTDEAFEIFEDMKSSENCQPD---SWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
.+..|..-+++|.+.- +-+ ...+-.+..+|...|..++|.+.-.-+.
T Consensus 182 ~~~AA~nR~~~v~e~y--~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 182 AYVAAINRFEEVLENY--PDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ChHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 7777777777666652 222 2233445556666666666665544443
No 247
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.10 E-value=4.2 Score=42.03 Aligned_cols=199 Identities=14% Similarity=0.167 Sum_probs=110.2
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHH-----HHHHHHhcCChhHHHHHHHH
Q 009025 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYNN-----LLDTMGRAKRPWQVKTIYKE 181 (546)
Q Consensus 108 l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~-----ll~~~~~~g~~~~a~~~~~~ 181 (546)
-++++.++|-.|+... +...++-.|++.+|.++|.+- |..- -...|+- +..-+...|+.++-..+.++
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 3455666676677654 344566677888888887543 2110 0111111 22334444444443333332
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH------HHHHcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR------EMKEKGMQL---SVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 182 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~------~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
-.+-- .|..-=.+...++...|+.++|..+.. .+.+.+.+. +..+...+..-+-+...+.-|-++|..|
T Consensus 696 RA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 696 RADWA--RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 21100 000011233455666777777776532 122222222 3344555555556677788899999887
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhcCChhHHHHHHH
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF-----------VLTSLIQCYGKAQRTDDVVRALN 321 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~A~~~~~ 321 (546)
-+. ..++......+++++|..+-++..+ +.||+. -|.---.+|-++|+..+|..+++
T Consensus 774 gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 774 GDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred ccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 643 3567788889999999998877654 233332 13334457788888888888888
Q ss_pred HhhhC
Q 009025 322 RLPEL 326 (546)
Q Consensus 322 ~m~~~ 326 (546)
++...
T Consensus 842 QLtnn 846 (1081)
T KOG1538|consen 842 QLTNN 846 (1081)
T ss_pred Hhhhh
Confidence 87643
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=93.97 E-value=3.7 Score=41.12 Aligned_cols=161 Identities=12% Similarity=0.038 Sum_probs=108.2
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 009025 227 TLY--NTLLAMCADVG-----YTDEAFEIFEDMKSSENCQPD-SWTFSSMITICSC---------RGKVSEAEAMFNEML 289 (546)
Q Consensus 227 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 289 (546)
..| ..++.+..... ..+.|+.+|.+........|+ ...|..+...+.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 66666655422 356889999999843322444 4444444333222 234556777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH-
Q 009025 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY- 366 (546)
Q Consensus 290 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~- 366 (546)
+.+.. |......+..++...++++.|..+|++... +.||. .+|....-.+...|+ ++|.+.++...+.+|.-..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 76643 777777888878888889999999999887 45765 345555555667788 9999999998888886543
Q ss_pred -HHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 367 -VVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 367 -~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
++...++.|+..+ +++|..++-+-
T Consensus 409 ~~~~~~~~~~~~~~--~~~~~~~~~~~ 433 (458)
T PRK11906 409 VVIKECVDMYVPNP--LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCCc--hhhhHHHHhhc
Confidence 3356666787766 58888876543
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.89 E-value=4.5 Score=36.12 Aligned_cols=166 Identities=17% Similarity=0.080 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR- 199 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 199 (546)
..+......+...+++..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444444444455444444444321 112233334444444444444444444444444432211 111111111
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcC
Q 009025 200 AYGRARYGEDTLSVYREMKEKGM--QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRG 276 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g 276 (546)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHcc
Confidence 34444555555555544433111 0112222222233344444555555554444432 12 2344444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 009025 277 KVSEAEAMFNEMLE 290 (546)
Q Consensus 277 ~~~~A~~~~~~m~~ 290 (546)
+++.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 44555554444443
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.74 E-value=6.8 Score=37.70 Aligned_cols=231 Identities=11% Similarity=0.062 Sum_probs=136.1
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhC--CCccCHHHHHHHHHHHHHcCChHHHHHHHH----HHHHCC-CCCCHHHHHHHHH
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNE--KWRIDPNAFSTLIKLYGTAGNFDGCLNVYE----EMKAIG-VKPNMITYNNLLD 164 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g-~~p~~~~~~~ll~ 164 (546)
.+..| ...+.++|+..+.....+ +..--..+|..+..+.++.|.+++++..-- -..+.. -..-...|..+..
T Consensus 13 g~~Ly-~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 13 GLQLY-QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HHhHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 677888888888776653 111123466777788888888887664321 111110 0011234555555
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCcCHHHHHHHHHH
Q 009025 165 TMGRAKRPWQVKTIYKEMTDN-GLSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEKG-----MQLSVTLYNTLLAM 235 (546)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~ 235 (546)
++-+.-++.+++.+-..-... |..| --...-++-.++.-.+.++++++.|+...+.- ......++..|-..
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 665555666666555444332 2222 11334456677777788999999998776431 11234578888899
Q ss_pred HHhcCCHHHHHHHHHHHHh----CCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHH
Q 009025 236 CADVGYTDEAFEIFEDMKS----SENCQPDSWTFS-----SMITICSCRGKVSEAEAMFNEMLE----AGFEPN-LFVLT 301 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~ 301 (546)
|.+..++++|.-+..+..+ -+. ..-..-|. .|.-++...|.+.+|.+.-++..+ .|-++. ....-
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 9999999998877665433 221 11112232 334466778888888777776543 332221 23445
Q ss_pred HHHHHHHhcCChhHHHHHHHHhh
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
.+.+.|...|+.|.|+.-|++..
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHH
Confidence 67778888899999888777653
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=2 Score=40.76 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=66.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCh
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT----SLIQCYGKAQRT 313 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~li~~~~~~g~~ 313 (546)
-.|+..+|-..++++.+.. +.|...+.-.=++|.-.|+.+.-...++++... ..++...|. .+.-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4667777777777777654 567777777777777777777777777776643 123332222 233344566777
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHH
Q 009025 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 355 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~ 355 (546)
++|.+.-++..+.+ +.|...-.++...+...|. .++.+++.
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 77777666665432 2244445555555555555 44444443
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.63 E-value=1.5 Score=40.50 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMI 269 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~li 269 (546)
.|+.-+..| +.|++..|...|...++.... -....+--|..++...|++++|..+|..+.+... .+.-...+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555444 345566666666666554211 1123344455666666666666666666555321 011224444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 009025 270 TICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
....+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555566666666666665543
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=2.5 Score=45.04 Aligned_cols=176 Identities=14% Similarity=0.149 Sum_probs=89.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM--ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 203 (546)
.-|..+.+...++-|+.+-+. .+..++. .......+-+.+.|++++|...|-+-+.. ++| ..+|.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 344555555555555555432 2212221 12222333455667777777666555432 222 134455555
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 283 (546)
..+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|....| ....+..+.+.+-.++|..
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHH
Confidence 55566666667777777665 55556667777777777777666666554 3332222 2334555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 284 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 284 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
+-.+... +......+ +-..|++++|++.+..|
T Consensus 485 LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 4433322 22222222 23345666666665543
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.30 E-value=3.2 Score=33.68 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=39.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCC
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITICSCRGK 277 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~ 277 (546)
+...|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+... ... ...|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhCc
Confidence 344455555555555544432 12344555555555555555555555554443321 111 1122222334445555
Q ss_pred HHHHHHHHHHHHHc
Q 009025 278 VSEAEAMFNEMLEA 291 (546)
Q Consensus 278 ~~~A~~~~~~m~~~ 291 (546)
-+.|..=|+..-+.
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 55555555544443
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.29 E-value=2.9 Score=33.91 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=68.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHh
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNL---FVLTSLIQCYGK 309 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~---~~~~~li~~~~~ 309 (546)
-+++..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+. |.+ .. ..|..-...|..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 45678899999999999988753 678889999999999999999999999988764 322 22 223333445677
Q ss_pred cCChhHHHHHHHHhhhCC
Q 009025 310 AQRTDDVVRALNRLPELG 327 (546)
Q Consensus 310 ~g~~~~A~~~~~~m~~~~ 327 (546)
.|+-+.|..-|+...+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 788888888887776655
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.25 E-value=7.6 Score=39.20 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~ 358 (546)
-..+..++-+.|+.++|++.|++|.+.. ..-+......|+.++...+. .++..++.+-.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3445666667788888888877776532 11123355666676666666 66666665543
No 257
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.16 E-value=10 Score=37.83 Aligned_cols=323 Identities=12% Similarity=0.114 Sum_probs=180.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhc
Q 009025 98 RAGNVEMAFGLYDRARNEKWRID------PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT--MGRA 169 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~ 169 (546)
+.+++.+|.++|.++-+.- ..+ ...-+.++++|... +.+.....+....+. .| ...|-.+..+ +.+.
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 7889999999999987652 212 22345677888764 466666666666554 23 3345555554 5678
Q ss_pred CChhHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCcCHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDN--GLSP------------NWNTYASLLRAYGRARYGEDTLSVYREMKEKG----MQLSVTLYNT 231 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~ 231 (546)
++++.|.+.+..-... +..+ |-.--+..++++...|++.++..+++++..+= ...+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8999999888766554 3222 22233567788899999999999999887653 3478899998
Q ss_pred HHHHHHhcC---------------CHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 009025 232 LLAMCADVG---------------YTDEAFEIFEDMKSSEN-----CQPDSWTFSSMITICSCR--GKVSEAEAMFNEML 289 (546)
Q Consensus 232 li~~~~~~g---------------~~~~A~~~~~~m~~~~~-----~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~ 289 (546)
++-.+++.= .++.+.-+.++|..... +.|-......++.-..-. .+..--.++++.-.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 766665431 12333333344432211 122222222332222211 11222233333334
Q ss_pred HcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC
Q 009025 290 EAGFEPNLF-VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 363 (546)
Q Consensus 290 ~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~ 363 (546)
..-+.|+-. ....|+..+.+ +.+++..+.+.+....+.+= ..+|..++....+.++ .+|.+.+.-+.-.+|.
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 444556532 33455555554 55666666665554322221 2478888888888888 8888888777777776
Q ss_pred hhHHH------HHHHHhhhhhcc---hHHHHHHHHHhcccC-ccc-hhhHHHHH---HHHhcCC-HHHHHHHHHHHHhc
Q 009025 364 LGYVV------KLLLEEQDIEGD---FKKEATELFNSISKD-VKK-AYCNCLID---LCVNLNL-LENACKLLELGLTL 427 (546)
Q Consensus 364 ~~~~~------~~L~~~~~~~g~---~~~~A~~~~~~~~~~-~~~-~~~~~li~---~~~~~g~-~~~A~~~~~~m~~~ 427 (546)
....- ..|-...+..+. .+..-+.+++.+... -|. .....|+. -+++.|. -++|+.+++..++.
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 54210 222222221111 122333444444321 121 12233333 3778887 77889999887653
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=7.6 Score=41.59 Aligned_cols=142 Identities=13% Similarity=0.159 Sum_probs=68.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL----LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
.-|+.+.+...++.|+.+-+. .+. |..+...+ .+-+.+.|++++|...|-+.... ..|. .+|.-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~k 406 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHH
Confidence 345555555555555554432 211 22222222 23334566666666665554432 1221 23444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhcCCH-HH
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PDDRFCGCLLNVMTQTPK-EE 349 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~-~~ 349 (546)
|....++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++..++.+..- .|.. .|.. ..+..|.+.+- ++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e---~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVE---TALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHH---HHHHHHHHhChHHH
Confidence 55555555556666666666654 55555666666666666666555544433 2221 1222 24444455554 44
Q ss_pred HHHHH
Q 009025 350 LGKLV 354 (546)
Q Consensus 350 a~~~~ 354 (546)
|..+-
T Consensus 482 a~~LA 486 (933)
T KOG2114|consen 482 AELLA 486 (933)
T ss_pred HHHHH
Confidence 44433
No 259
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.14 E-value=1.2 Score=41.71 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 455556666666666666666666666654 55666666666666666666666666666554
No 260
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=7.3 Score=41.18 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 342 (546)
-+.+--+.-+..-|+..+|.++-.+.+- ||-..|-.-+.+++..+++++-+++-+.+. .+.-|..++.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 3444555566677778888777766654 777777777888888888877666555443 134566677788
Q ss_pred hcCCH-HHHHHHHHHH
Q 009025 343 TQTPK-EELGKLVECV 357 (546)
Q Consensus 343 ~~~g~-~~a~~~~~~~ 357 (546)
.+.|+ ++|.+++-..
T Consensus 755 ~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV 770 (829)
T ss_pred HhcccHHHHhhhhhcc
Confidence 88887 8888777654
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.01 E-value=5.3 Score=34.25 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=64.8
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCC
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN---LLDTMGRAKR 171 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---ll~~~~~~g~ 171 (546)
.++.|..++|+.-|..+.+.|..--+. ..-.+.....+.|+...|...|++.-.....|-..-=.. -.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 346677777777777777665442222 122233445566777777777777655432232210001 1112345566
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 219 (546)
++......+-+-..|-+.-...-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666655555554444333444445555555566666666666666554
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.99 E-value=2.8 Score=34.79 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=40.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 308 (546)
..+.|++++|.+.|+.+...-.. +-....-..|+.+|.+.|++++|...+++.++....---+-|-..+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34566666666666666654210 12334455666666777777777777766666443322334444444443
No 263
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.97 E-value=8.9 Score=36.72 Aligned_cols=128 Identities=15% Similarity=0.244 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCCC---cCHHHHHHHHHHHHhcCC--
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR--AR----YGEDTLSVYREMKEKGMQ---LSVTLYNTLLAMCADVGY-- 241 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~-- 241 (546)
++...+++.|.+.|+.-+..+|-+..-.... .. ...+|..+|+.|++...- ++...+..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455666777777776666555543333222 11 234566666666655321 233344444332 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 009025 242 --TDEAFEIFEDMKSSENCQPDSWT-FSSMITICSCRGK--VSEAEAMFNEMLEAGFEPNLFVLTS 302 (546)
Q Consensus 242 --~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~ 302 (546)
.++++.+|+.+.+.|..+-|..- ...++..+..... ..++.++++.+.+.|+++....|..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 23445555555554432223222 2222222111111 2345555555555555555444443
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.92 E-value=1.3 Score=41.48 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----CCCCCCHHHHH
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-----LGITPDDRFCG 336 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~ 336 (546)
..++..++..+...|+++.+...++++..... -+...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34677888899999999999999999998754 3889999999999999999999999998864 68888877766
Q ss_pred HHHHH
Q 009025 337 CLLNV 341 (546)
Q Consensus 337 ~ll~~ 341 (546)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 65555
No 265
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.70 E-value=4.7 Score=32.85 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 294 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 294 (546)
....+..+..+...|+-|.-.+++.++.+.+ .++......+..+|.+.|+..++.+++.+..+.|+.
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445556667777777777777777776544 667777777777777777777777777777776653
No 266
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.62 E-value=2.2 Score=39.39 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EP-NLFVLTSLI 304 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~li 304 (546)
.|+.-+.. .+.|++.+|..-|...++...- .-....+--|...+...|++++|..+|..+.+.-. .| -...+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555443 3455677777777776665310 11122344566666666666666666666665321 11 134555555
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 009025 305 QCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+..+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 566666666666666666654
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.45 E-value=12 Score=36.83 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 260 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
....+|..+.+.+.+.|.++.|...+.++...+... .....-.-+..+-..|+.++|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666777777777777666666532111 222333334445556666666666666554
No 268
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.38 E-value=18 Score=38.79 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=34.4
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHC
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN-------FDGCLNVYEEMKAI 150 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 150 (546)
=|+.|+|++++|.++....... .......+...+..|....+ -++...-|++....
T Consensus 119 yy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 119 YYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3555999999999999555543 33455667777888876532 23445556655544
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.26 E-value=0.61 Score=29.90 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 230 NTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
..+...|.+.|++++|+++|++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.11 E-value=12 Score=36.15 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP---DSWTFSSMITICSCRGKVSEAEAMFNEMLEA-----GFEPNLFV 299 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~ 299 (546)
.|-.+.+++.+..++.+++.+-+.-.......+ ......++..+....+.++++++.|+...+- +.-.....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444555555555556666655554433221122 1123344666677777788888888776542 11122346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
+-.|-..|.+..++++|.-+.....
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 7777777888888888776555443
No 271
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=14 Score=36.44 Aligned_cols=231 Identities=12% Similarity=0.101 Sum_probs=120.4
Q ss_pred CCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCcCHH---
Q 009025 154 PNMITYNNLLD-TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR--AYGRARYGEDTLSVYREMKEKGMQLSVT--- 227 (546)
Q Consensus 154 p~~~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~--- 227 (546)
|...+|-.+-. ++.-.|+.++|.++-...++.. ....+..+++ ++--.++.+.|...|++.+..+ |+..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 44444443322 2445566666666555554432 1122222222 2333455666666666555442 2211
Q ss_pred ----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009025 228 ----------LYNTLLAMCADVGYTDEAFEIFEDMKSSEN--CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295 (546)
Q Consensus 228 ----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 295 (546)
.+..=..-..+.|++.+|.+.|.+.+.... .+++...|........+.|+.++|+.--++... .
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----i 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----I 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----c
Confidence 122223445678888888888888776431 245566677777778888888888888777776 3
Q ss_pred CHH---HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCChhHHH--
Q 009025 296 NLF---VLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPKEELGKLVECVEKS-NSKLGYVV-- 368 (546)
Q Consensus 296 ~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~-~~~~~~~~-- 368 (546)
|.. .|..-..++...++|++|.+-|+...+..-.+ +..++.-...++.+.....-.+++...... .......+
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk 396 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRK 396 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHH
Confidence 332 23333456667788888888888776533222 334555555555555443333332222111 11111122
Q ss_pred HHHHHhhhhh-cchHHHHHHHHHhccc
Q 009025 369 KLLLEEQDIE-GDFKKEATELFNSISK 394 (546)
Q Consensus 369 ~~L~~~~~~~-g~~~~~A~~~~~~~~~ 394 (546)
-.|.....+. |. ..+|+..|.+...
T Consensus 397 ~AL~~Hpd~~ags-q~eaE~kFkevge 422 (486)
T KOG0550|consen 397 LALVHHPDKNAGS-QKEAEAKFKEVGE 422 (486)
T ss_pred HHHHhCCCcCcch-hHHHHHHHHHHHH
Confidence 2222222222 32 3777878877764
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.69 E-value=0.27 Score=30.02 Aligned_cols=27 Identities=22% Similarity=0.092 Sum_probs=22.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 400 YCNCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
+|+.|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999653
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.63 E-value=0.67 Score=29.71 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
+|..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.54 E-value=13 Score=35.35 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=69.2
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHH-------HHHHHcC-ChHHHHHHHHHHHHC--------CCCCCH----
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLI-------KLYGTAG-NFDGCLNVYEEMKAI--------GVKPNM---- 156 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li-------~~~~~~g-~~~~A~~~~~~m~~~--------g~~p~~---- 156 (546)
.+.|+++.|..++.+........++.....|. ....+.+ +++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 37889999999998887642122333222222 2223344 777777776665432 112222
Q ss_pred -HHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 157 -ITYNNLLDTMGRAKRPW---QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 157 -~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
.++..++.++...+..+ +|.++++.+.... .-...++-.-+..+.+.++.+.+.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34556666666666544 3445555554432 112445555566666677777777777777764
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.46 E-value=2.8 Score=36.70 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
..+..+...|.+.|+.+.|++.|.++.+....+. ...+-.+|....-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777777777777777777766543333 23455566666667777776666655543
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.18 E-value=5.9 Score=33.64 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=26.1
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFS-TLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.-.+.++.+++..+++-++-. +|...... .-...+...|+|.+|+.+|+++.+.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 333555666666666655543 22222111 1122345556666666666665544
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.13 E-value=3.9 Score=34.01 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=49.3
Q ss_pred hhhccchhhhcCCHHHHHHHHHHHHhCC--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 89 KLKEKSYDTRAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166 (546)
Q Consensus 89 ~l~~~~~~~~~g~~~~A~~l~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 166 (546)
......-..+.|++++|.+.|+.+..+- .+-...+.-.|+.+|.+.|++++|+..+++.++....--..-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3333344447888888888888887641 12244566677788888888888888888877763221123444444444
Q ss_pred Hh
Q 009025 167 GR 168 (546)
Q Consensus 167 ~~ 168 (546)
+.
T Consensus 93 ~~ 94 (142)
T PF13512_consen 93 SY 94 (142)
T ss_pred HH
Confidence 33
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=12 Score=34.05 Aligned_cols=23 Identities=22% Similarity=-0.024 Sum_probs=15.5
Q ss_pred hccchhhhcCCHHHHHHHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRAR 113 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~ 113 (546)
+....|....++++|...+....
T Consensus 36 kAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH
Confidence 44455556778888887776665
No 279
>PRK09687 putative lyase; Provisional
Probab=90.77 E-value=15 Score=34.85 Aligned_cols=221 Identities=11% Similarity=0.046 Sum_probs=130.5
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP----WQVKTIYKEMTDNGLSPNWNTY 194 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~~~ 194 (546)
+|.......+.++...|. +++...+..+.. .+|...-...+.++++.|+. +++..++..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 467777777777777774 334444444444 35667777777778887763 4566666666433 3566666
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009025 195 ASLLRAYGRARYG-----EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269 (546)
Q Consensus 195 ~~ll~~~~~~g~~-----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 269 (546)
...+.++...+.. ..+...+..+... ++..+-...+.++++.++ ++++..+-.+.+ .+|...-...+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~ 180 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHH
Confidence 6666666555421 2233333333322 255566667777777776 456666666665 33444555555
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHH
Q 009025 270 TICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 348 (546)
Q Consensus 270 ~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 348 (546)
.++++.+ +-..+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555543 23455555655554 3566777777777777777 45666555555432 2 234566777777777
Q ss_pred HHHHHHHHHHHcCC
Q 009025 349 ELGKLVECVEKSNS 362 (546)
Q Consensus 349 ~a~~~~~~~~~~~~ 362 (546)
++...+..+.+..+
T Consensus 252 ~a~p~L~~l~~~~~ 265 (280)
T PRK09687 252 TLLPVLDTLLYKFD 265 (280)
T ss_pred hHHHHHHHHHhhCC
Confidence 77777777666444
No 280
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.76 E-value=21 Score=36.30 Aligned_cols=181 Identities=10% Similarity=0.140 Sum_probs=118.2
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
.|-...-+++..++++..+.-...+..+|.+.| -+-..|..++.+|... ..+.-..+++++.+..+. |++.-.-|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344555677888888888888888888888875 5777888899988888 557778888888886553 444445555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQL-----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
.-|-+ ++...+..+|.++..+=++. -...|.-++..- ..+.|....+..++........-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55544 88888888888876552210 112455444321 34566666666666554322445566666777788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009025 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 307 (546)
...++.+|.+++..+.+.+-+ |...-..+|..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 888888888888877765422 444444444433
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.74 E-value=25 Score=37.22 Aligned_cols=180 Identities=15% Similarity=0.147 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHh
Q 009025 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKL-----YGTAGNFDGCLNVYEEMKA-------IGVKPNMITYNNLLDTMGR 168 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~ 168 (546)
+...|.+.++.....| +......+..+ +....+.+.|+.+|+.+.+ .| +.....-+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4678888888888775 44444333333 3355789999999999876 44 33355566777766
Q ss_pred cC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH----h
Q 009025 169 AK-----RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA----D 238 (546)
Q Consensus 169 ~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~ 238 (546)
.. +.+.|..++...-+.|. |+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 43 56778888888888774 454444333333333 24677899999988888743 22222222222 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009025 239 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 293 (546)
..+.+.|..++++.-+.| .|-..--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 377 ~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 347788888888888877 3333323333444444 777777777766666543
No 282
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.46 E-value=27 Score=37.18 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHH
Q 009025 398 KAYCNCLIDLCVNLNLLENACKLLEL 423 (546)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (546)
++-|.-.+.+|.+.|+.++|.+.+-+
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhc
Confidence 34555666666666666666666654
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.46 E-value=0.65 Score=28.25 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMK 148 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~ 148 (546)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666777777777777766643
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.66 E-value=4.8 Score=35.25 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
.+..+.+.|.+.|+.+.|++.|.++.+....+. ...+-.+|......+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555556666666666666666555432221 2334445555555555555555555443
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.66 E-value=12 Score=32.11 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 105 AFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 105 A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
-.+.++.+.+.++.|+...|..+++.+.+.|++.... .+...++-+|.......+-.+.. ....+.++=-+|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 3556677777899999999999999999999876554 44555556666555544433332 33444444444444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 185 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 185 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
+ + ...+..+++.+...|++-+|+++.+..... +......++.+-.+.++...-..+|+-...
T Consensus 87 R-L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 R-L---GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred H-h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 0 114667888889999999999998775332 223335567777777776665555555544
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.44 E-value=32 Score=36.44 Aligned_cols=183 Identities=17% Similarity=0.126 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHH--H-HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-
Q 009025 137 FDGCLNVYEEMKAIGVKPNMITYNNLLD--T-MGRAKRPWQVKTIYKEMTD-------NGLSPNWNTYASLLRAYGRAR- 205 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g- 205 (546)
...|.++++...+.|. ........++. + ++...|.+.|...|+.+.+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4578888888887652 22222222222 2 3456788999999988877 44 3335566677776643
Q ss_pred ----ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcCCH
Q 009025 206 ----YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD-VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS--CRGKV 278 (546)
Q Consensus 206 ----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~g~~ 278 (546)
+.+.|..++....+.|.+ +....-..+..... ..+...|.++|...-..| .++..-+.+++.... -..+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCH
Confidence 567788888888887743 44433333322222 245788999999988877 344444433333333 34567
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 328 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 328 (546)
..|..++.+.-+.| .|...--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88888888888877 3332222223333333 777777777766666553
No 287
>PRK09687 putative lyase; Provisional
Probab=89.43 E-value=20 Score=34.10 Aligned_cols=217 Identities=11% Similarity=0.049 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-----h
Q 009025 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF----DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-----W 173 (546)
Q Consensus 103 ~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-----~ 173 (546)
+.+...+..+... +|...-...+.++++.|+. .++..++..+... .++..+-...+.+++..+.. .
T Consensus 53 ~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~ 127 (280)
T PRK09687 53 QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSP 127 (280)
T ss_pred chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccch
Confidence 3444444444443 4777777788888888864 4678888877443 47777777777777766432 2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDM 252 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m 252 (546)
.+...+..... .++..+-...+.++.+.++ ++|+..+-.+.+. +|...-...+.++++.+ ....+...+..+
T Consensus 128 ~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~ 200 (280)
T PRK09687 128 KIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAM 200 (280)
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 23344433333 3467777788888888887 4577777776653 35566666677777654 245677777777
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
.. .++..+-...+.++++.|+. .|...+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||.
T Consensus 201 L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~ 267 (280)
T PRK09687 201 LQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDN 267 (280)
T ss_pred hc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCCh
Confidence 74 56778888899999999984 5666666666532 3 245678889999985 788888888863 3577
Q ss_pred HHHHHHHHHHhc
Q 009025 333 RFCGCLLNVMTQ 344 (546)
Q Consensus 333 ~t~~~ll~~~~~ 344 (546)
.+-...+.+|.+
T Consensus 268 ~v~~~a~~a~~~ 279 (280)
T PRK09687 268 EIITKAIDKLKR 279 (280)
T ss_pred hHHHHHHHHHhc
Confidence 777766766653
No 288
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.68 E-value=6.3 Score=37.15 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=19.8
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHH
Q 009025 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLV 354 (546)
Q Consensus 313 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~ 354 (546)
.++++.++..=+..|+-||..+++.+++.+.+.++ .+|..+.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vv 158 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVV 158 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHH
Confidence 33444444444444555555555555555555444 4444433
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.53 E-value=48 Score=37.40 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAG--NFDGCLNVYEEMKA 149 (546)
Q Consensus 122 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 149 (546)
.-...+|..|.+.+ ..+.|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44456777888777 66667666666553
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.84 E-value=1.5 Score=26.03 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.+|..+..+|...|++++|+..|+++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 368889999999999999999999988764
No 291
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.41 E-value=25 Score=31.89 Aligned_cols=21 Identities=10% Similarity=0.215 Sum_probs=11.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCC
Q 009025 273 SCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~~~~ 293 (546)
+..+++.+|.++|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666666555433
No 292
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.87 E-value=12 Score=38.65 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=51.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
.+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHH
Confidence 34566666655544322 345566666666666666666666655443 23344455555555544
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
..+-....+.|.. | .-..+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444444432 1 1223345556666666655443
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.80 E-value=21 Score=30.39 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=8.1
Q ss_pred HhcCChhHHHHHHHHhh
Q 009025 308 GKAQRTDDVVRALNRLP 324 (546)
Q Consensus 308 ~~~g~~~~A~~~~~~m~ 324 (546)
...|++++|..+|+++.
T Consensus 55 i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELE 71 (160)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 34444444444444443
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.73 E-value=16 Score=30.61 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=23.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 98 RAGNVEMAFGLYDRARNEKWR-IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
..++++++..+++.|+-..++ +...++. ...+...|+|++|+.+|++..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 355555555555555443111 1111222 22244555566666666555554
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.70 E-value=1.1 Score=26.91 Aligned_cols=22 Identities=23% Similarity=0.653 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCL 141 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~ 141 (546)
++.+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5556666666666666665553
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.50 E-value=1.9 Score=25.35 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=24.3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 400 YCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.|..+..+|.+.|++++|++.|++.++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 57788899999999999999999987654
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.45 E-value=34 Score=32.47 Aligned_cols=162 Identities=18% Similarity=0.166 Sum_probs=82.5
Q ss_pred HHcCChHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCC-----
Q 009025 132 GTAGNFDGCLNVYEEMKAIG--VKPNM------ITYNNLLDTMGRAKRPWQVKTIYKEMTDN--------GLSPN----- 190 (546)
Q Consensus 132 ~~~g~~~~A~~~~~~m~~~g--~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------g~~p~----- 190 (546)
.+.|+++.|..++.+..... ..|+. ..||.-...+.+..+++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788999999988876532 23332 23443333333332777776666554332 11222
Q ss_pred HHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGE---DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 267 (546)
..+...++.+|...+..+ +|..+++.+...... ....+-.-+..+.+.++.+++.+++.+|...- ......+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHHH
Confidence 235566666776666544 344455555333211 23444445555556777777777777777653 212233333
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHcCCCCCH
Q 009025 268 MITIC---SCRGKVSEAEAMFNEMLEAGFEPNL 297 (546)
Q Consensus 268 li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 297 (546)
++..+ ... ....|...++.+....+.|..
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 33333 322 233455555555544344333
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.94 E-value=2.6 Score=24.92 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.+|..+...|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35566666666666666666666666653
No 299
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.93 E-value=20 Score=29.38 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 190 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
+..-....++.+.+.|+-|.-.+++.++.+. -.++....-.+..+|.+.|+..++.+++.+.-+.|.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3455566777888888888888888887643 245777778888888888888888888888887773
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.60 E-value=12 Score=35.51 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009025 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266 (546)
Q Consensus 190 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 266 (546)
...+...++..-....++++++.++-++... -..++. +-.+.++- +..-+.++++.++..-+.-|+ -||..+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGi-F~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGI-FPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhcc-ccchhhHH
Confidence 3344444444444455556666555555432 011111 11111221 122344555555555555554 56666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+|+.+.+.+++.+|..+...|..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666665555543
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.49 E-value=1.3 Score=26.61 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 009025 261 DSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~A 281 (546)
+...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 333333344444444433333
No 302
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=84.44 E-value=36 Score=31.92 Aligned_cols=26 Identities=23% Similarity=0.005 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
|......+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 55666667777777777777766553
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.66 E-value=2.9 Score=25.90 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKA 149 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 149 (546)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666666666666666666666543
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.41 E-value=12 Score=33.09 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=58.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCC
Q 009025 130 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYASLLRAYGRARY 206 (546)
Q Consensus 130 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~ 206 (546)
.+.+.|+ +.|...|-.+...+.--++.....|. .|....|.+++..++.+.++. +-.+|...+.+|...|.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455554 67888888888776544555544444 444577889999999888764 336789999999999999999
Q ss_pred hHHHH
Q 009025 207 GEDTL 211 (546)
Q Consensus 207 ~~~A~ 211 (546)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
No 305
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.10 E-value=25 Score=32.87 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHhcCChhHHHHHH
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV-------LTSLIQCYGKAQRTDDVVRAL 320 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------~~~li~~~~~~g~~~~A~~~~ 320 (546)
.+.+-..+.+++++|...+.++...|+..+..+ ...+...|...|++...-+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 344555677788888888888887777655443 334455566666665554443
No 306
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.08 E-value=11 Score=28.96 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 218 (546)
-++.+-++.+....+.|+..+..+.+++|-+.+++..|.++|+..+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555544
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.92 E-value=2.5 Score=26.22 Aligned_cols=28 Identities=29% Similarity=0.207 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 399 AYCNCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3678999999999999999999998763
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.78 E-value=60 Score=33.18 Aligned_cols=181 Identities=12% Similarity=0.105 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009025 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 232 (546)
Q Consensus 153 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 232 (546)
..|.....+++..++......-++-+-.+|+..|- +...|-.++.+|... .-++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 35666777899999999888889999999998763 788999999999988 667788999999887654 55555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 009025 233 LAMCADVGYTDEAFEIFEDMKSSENCQ-----PDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLFVLTSLIQC 306 (546)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~ 306 (546)
..-|-+ ++...+..+|.++...-+ + .=...|.-|+..- ..+.+....+..++.. .|...-.+.+.-+-.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI-~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFI-PRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 555555 888899999988876532 1 1122454444421 3567777777777664 3555566777888888
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 342 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 342 (546)
|....++++|++++..+.+.+ .-|...-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 999999999999999887654 22444444444433
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.47 E-value=76 Score=34.19 Aligned_cols=150 Identities=11% Similarity=0.063 Sum_probs=84.6
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCcc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRI---DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 167 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 167 (546)
..+.++.+.+.+++|+++.+..... .+ -...+...|..+...|++++|-...-.|.. -+..-|--.+..+.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFA 434 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhc
Confidence 3456677888999999888766543 33 345778889999999999999888888764 24445555555555
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------------------CCCcCHH
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--------------------GMQLSVT 227 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--------------------g~~~~~~ 227 (546)
..++...... -+.......+...|..+|..+.. .+.. .+++...+. .-. +..
T Consensus 435 e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~---~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~ 506 (846)
T KOG2066|consen 435 ELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVK---GFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STA 506 (846)
T ss_pred cccccchhhc---cCCCCCcccCchHHHHHHHHHHH-HHHH---HHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chh
Confidence 5444333221 11111111234455555555544 1111 111111110 001 222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.-..|+.-|...+++..|++++-...+
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccC
Confidence 334477778888888888887766553
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.44 E-value=3.7 Score=24.05 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
.|..+...|...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666543
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.72 E-value=11 Score=28.93 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666666666665553
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.64 E-value=1e+02 Score=35.05 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 009025 153 KPNMITYNNLLDTMGRAK--RPWQVKTIYKEMTD 184 (546)
Q Consensus 153 ~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~ 184 (546)
.|+ .-.-.+|.++.+.+ .+++++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 455 44456777777776 56666666666553
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.42 E-value=7.5 Score=30.06 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 218 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 218 (546)
..+-++.+....+.|+..+..+.+++|.+.+++..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555555555444
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.72 E-value=0.66 Score=38.98 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=18.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 214 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 214 (546)
+.+.++....+++.+...+...+....+.++..|++.++.++..+++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 33344444444444443332333444444444444444434333333
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.12 E-value=17 Score=32.26 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
++|.+.|-.+...+. .+....-..+..|-...+.+++..++.+..+. +-.+|...+..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~--l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPE--LETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345555555554442 22222222222233344555555555554432 22445555555555555555555553
No 316
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.73 E-value=56 Score=30.87 Aligned_cols=147 Identities=12% Similarity=0.141 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHH-HcCCCcCHHHHHHHHH
Q 009025 159 YNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGR-AR-YGEDTLSVYREMK-EKGMQLSVTLYNTLLA 234 (546)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g-~~~~A~~~~~~m~-~~g~~~~~~~~~~li~ 234 (546)
|..|+. +.....+|+++|+...- ..+--|..+...+++.... .+ ....-.++.+-+. ..|-.++..+...+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555543 33445667777763222 2244566777777766655 22 2222223333333 2344567778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHH
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE-----MLEAGFEPNLFVLTSLIQCYG 308 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~~~~p~~~~~~~li~~~~ 308 (546)
.++..+++.+-.++++.....-...-|...|..+|+.....|+..-..++.++ +++.++..+...-..+-..|.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 88888888888888888776522266888888888888888888887777764 334566656555555544443
No 317
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.55 E-value=47 Score=29.90 Aligned_cols=183 Identities=14% Similarity=0.104 Sum_probs=83.6
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
|-..|-...|+-=|.+.... .| -+.+||-|.--+...|+++.|.+.|+...+.+..-+-...|- .-++.-.|++..
T Consensus 75 YDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHh
Confidence 33445455555555554443 23 345677777777777777777777777776542212112222 222334566666
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 175 VKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYR-EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 175 a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
|.+=+...-+... .|=...|--++ -..-+..+|..-+. +.... |..-|...|-.|.- |++. .+.+++++
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~ 222 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERL 222 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHH
Confidence 6655554444321 11111221111 12234444443332 22221 43444443333321 1111 12233333
Q ss_pred HhCCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 253 KSSEN-----CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 253 ~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
..... ...-+.||--|.+-|...|++++|..+|+-.+.
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 32110 001134556666677777777777777776654
No 318
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.43 E-value=47 Score=29.87 Aligned_cols=176 Identities=18% Similarity=0.110 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009025 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 321 (546)
++-|.-=|.+..... +.-..+||-|.--+...|+++.|.+.|+...+.+..-+-...|.=|. +.-.|++.-|.+-|.
T Consensus 81 ~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~ 157 (297)
T COG4785 81 RALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHH
Confidence 333333444444432 33456778888888888888888888888887554433333333332 234577877777666
Q ss_pred HhhhCC-CCCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCC-ChhHHHHHHHHhhhhhcchHHHHHHHHHhccc---C
Q 009025 322 RLPELG-ITPDDRFCGCLLNVMTQTPKEELGK-LVECVEKSNS-KLGYVVKLLLEEQDIEGDFKKEATELFNSISK---D 395 (546)
Q Consensus 322 ~m~~~~-~~p~~~t~~~ll~~~~~~g~~~a~~-~~~~~~~~~~-~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~---~ 395 (546)
..-..+ -.|-...|-.+.. .+....+|.. +.+...+.+. ..+.. ++..|. |..-+ ..+|+.+.. +
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E--~k~dP~~A~tnL~qR~~~~d~e~WG~~---iV~~yL--gkiS~--e~l~~~~~a~a~~ 228 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE--QKLDPKQAKTNLKQRAEKSDKEQWGWN---IVEFYL--GKISE--ETLMERLKADATD 228 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH--hhCCHHHHHHHHHHHHHhccHhhhhHH---HHHHHH--hhccH--HHHHHHHHhhccc
Confidence 554332 1222233433332 2222233332 3343333321 12221 111111 10101 112222211 1
Q ss_pred ------ccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009025 396 ------VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 429 (546)
Q Consensus 396 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 429 (546)
.-..+|--|..-+...|+.++|..+|+..+...+
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1123677788889999999999999998876543
No 319
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.21 E-value=1.7e+02 Score=36.13 Aligned_cols=145 Identities=13% Similarity=0.091 Sum_probs=88.0
Q ss_pred hcCCHHHHHHHHHHHHhCC--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 98 RAGNVEMAFGLYDRARNEK--WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 175 (546)
+++.+.+|+..++.-.... -......|-.+...|+..+++|....+...-.. .|+ .+ .-|......|++..|
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEASGNWADA 1468 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHhhccHHHH
Confidence 7888888888888732110 012333445555688888888887777764221 222 22 244455677889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL-LAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 250 (546)
...|+.+.+.+. +...+++-++......|.++.++-..+..... ..+....|+++ +.+--+.+++|..+....
T Consensus 1469 ~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1469 AACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999988642 23556666666666677777776655554433 12233333333 344467777777776665
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.10 E-value=0.79 Score=38.48 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=7.3
Q ss_pred chhhHHHHHHHHhcC
Q 009025 398 KAYCNCLIDLCVNLN 412 (546)
Q Consensus 398 ~~~~~~li~~~~~~g 412 (546)
...|..+++.|...+
T Consensus 125 ~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 125 PELWEQLLKYCLDSK 139 (143)
T ss_dssp SHHHHHHHHHHCTST
T ss_pred HHHHHHHHHHHHhcC
Confidence 345555555554443
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.89 E-value=30 Score=26.88 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444444455555555555556666666666666655555443
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.87 E-value=5.4 Score=23.37 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=25.1
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 400 YCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+|..+...|.+.|++++|.+.|++..+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 57788899999999999999999987654
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.30 E-value=47 Score=29.33 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN-----LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 196 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 196 (546)
..|..++.... .+.. +.....+.+.... ...+|.. +...+...+++++|+..++..... +....+..
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~ 126 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKA 126 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHH
Confidence 34555555553 2333 4445555555431 1223332 234577788888888888877653 22223332
Q ss_pred -----HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 197 -----LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 197 -----ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
|.+.....|.+|+|++.++...+.+.. ......-.+.+...|+-++|..-|++....+
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 345567778888888888877665432 2333444577888888888888888887764
No 324
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.00 E-value=63 Score=30.02 Aligned_cols=187 Identities=12% Similarity=0.128 Sum_probs=115.8
Q ss_pred CCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHc---CC-
Q 009025 151 GVKPNMITYNNLLDT-MGRAKRPWQVKTIYKEMTDNGLSPNWN---TYASLLRAYGRARYGEDTLSVYREMKEK---GM- 222 (546)
Q Consensus 151 g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~---g~- 222 (546)
+-.||+..=|..-++ -.+..++++|+.-|++.++..-+.... +.--+|..+.+.|++++....|.+|... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 446776554443332 123457888999999988753332333 3445678888999999999888887632 11
Q ss_pred -CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----
Q 009025 223 -QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS----SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF---- 293 (546)
Q Consensus 223 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---- 293 (546)
.-+....|+++.......+.+-..++++.-.+ ...-..-..|-.-|...|...|.+.+..++++++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 12455677888777777777776666665432 111122233445788888888888888888888775311
Q ss_pred CCC-------HHHHHHHHHHHHhcCChhHHHHHHHHhhh-CCCCCCHHHHHH
Q 009025 294 EPN-------LFVLTSLIQCYGKAQRTDDVVRALNRLPE-LGITPDDRFCGC 337 (546)
Q Consensus 294 ~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ 337 (546)
.-| ...|..-|..|....+-.+...+|++... +.-.|.+.....
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv 232 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV 232 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH
Confidence 111 23466667777777777777777777653 334566655443
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.95 E-value=28 Score=36.15 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=53.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009025 132 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211 (546)
Q Consensus 132 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 211 (546)
.+.|+++.|.++..+. -+..-|..|.++..+.+++..|.+.|.+... |..|+-+|...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3456666666655443 2445566666666666666666666655433 334555555666655544
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 212 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
.+-....+.|.. |.. ..+|...|+++++.+++..-
T Consensus 713 ~la~~~~~~g~~-N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKN-NLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhccc-chH-----HHHHHHcCCHHHHHHHHHhc
Confidence 444444444422 221 22344566666666665544
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.85 E-value=44 Score=28.10 Aligned_cols=17 Identities=35% Similarity=0.643 Sum_probs=8.0
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009025 274 CRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~ 290 (546)
..|++++|..+|+++.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 44444444444444443
No 327
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.38 E-value=50 Score=28.57 Aligned_cols=139 Identities=9% Similarity=0.091 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHH
Q 009025 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTL 232 (546)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l 232 (546)
....|...++ +++.+..++|+.-|..+.+.|...-. -.---+.......|+...|...|+++-.....|-.. -.--|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3345554444 34566778888888888877653211 111122234566788888888888876554334332 11112
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009025 233 --LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295 (546)
Q Consensus 233 --i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 295 (546)
.-.+..+|-+++.....+-+-..+. +.-...-..|.-+-.+.|++.+|...|..+....-.|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n-~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGN-PMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCC-hhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2234567888888888887776664 4455566677777788888888888888877543333
No 328
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.16 E-value=15 Score=35.16 Aligned_cols=44 Identities=11% Similarity=-0.079 Sum_probs=19.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 009025 166 MGRAKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTL 211 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~ 211 (546)
|.+.|.+++|+..|..-+.. .| |.+++..-..+|.+..++..|+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHH
Confidence 44445555555544443332 22 4444444444444444444433
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.99 E-value=1.4e+02 Score=32.41 Aligned_cols=151 Identities=9% Similarity=0.074 Sum_probs=91.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKP---NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 204 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 204 (546)
|+-+.+.+.+++|+++.+.-... .| -.......|..+.-.|++++|....-.|... +..-|.--+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45667788899998887765432 33 3456778888888999999999888888764 566666666666666
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH---H--------------hCCCCCCCHHHHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM---K--------------SSENCQPDSWTFSS 267 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~--------------~~~~~~~~~~~~~~ 267 (546)
++..... .-+.......+...|..++..|.. .+...-.++.++- . +.. .-+...-..
T Consensus 437 ~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~ 510 (846)
T KOG2066|consen 437 DQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEV 510 (846)
T ss_pred cccchhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHH
Confidence 6654332 223332223456677777777766 2222221111110 0 000 111222335
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009025 268 MITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
|+..|...+++..|..++-..++
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHccChHHHHHHHHhccC
Confidence 77888888888888888766654
No 330
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=73.75 E-value=91 Score=30.30 Aligned_cols=82 Identities=10% Similarity=0.057 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 259 QPDSWTFSSMITICSCRGK------------VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
+-|..+|..++..--..-. .+.-+.++++.++.+. -+...+..++..+.+..+.++..+.|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5678888888765433221 3344556666666533 34556666677777766777777777777654
Q ss_pred CCCC-CHHHHHHHHHHHh
Q 009025 327 GITP-DDRFCGCLLNVMT 343 (546)
Q Consensus 327 ~~~p-~~~t~~~ll~~~~ 343 (546)
. | +...|...|+...
T Consensus 95 ~--~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 95 N--PGSPELWREYLDFRQ 110 (321)
T ss_pred C--CCChHHHHHHHHHHH
Confidence 2 2 3445555555443
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.95 E-value=5.9 Score=21.89 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=17.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHH
Q 009025 401 CNCLIDLCVNLNLLENACKLLE 422 (546)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~ 422 (546)
...|..++...|+.++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4467788888888888888775
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.85 E-value=27 Score=31.41 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 009025 229 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPNLFVLTSLIQC 306 (546)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~ 306 (546)
.+.-++.+.+.+.+.+|+...++-++.. +.|..+-..++..|+-.|++++|..-++-.-... ..+-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445666677777888888777776664 5566666777888888888888877666554422 22334556666654
No 333
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.68 E-value=68 Score=28.37 Aligned_cols=89 Identities=9% Similarity=0.018 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009025 233 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS-----SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307 (546)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 307 (546)
...+...+++++|+..++..... +....+. .|.+.....|.+|+|+.+++...+.++. ......-.+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 34566677777777777765542 2222232 3344556667777777777665553221 12223334566
Q ss_pred HhcCChhHHHHHHHHhhhCC
Q 009025 308 GKAQRTDDVVRALNRLPELG 327 (546)
Q Consensus 308 ~~~g~~~~A~~~~~~m~~~~ 327 (546)
...|+-++|..-|...++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 66677777777776666543
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.33 E-value=6.8 Score=22.61 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=13.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 009025 127 LIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 127 li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555555666666666555543
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.42 E-value=69 Score=27.92 Aligned_cols=76 Identities=11% Similarity=0.120 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 242 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-----------VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
+++|+.-|++..... +-...++..+..+|...+. +++|...|++..+ ..|+...|+.-++...
T Consensus 51 iedAisK~eeAL~I~--P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKIN--PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH--
Confidence 344444455554432 3334566666666554432 3334444444443 2366666665555442
Q ss_pred CChhHHHHHHHHhhhCC
Q 009025 311 QRTDDVVRALNRLPELG 327 (546)
Q Consensus 311 g~~~~A~~~~~~m~~~~ 327 (546)
+|-++..++.+.+
T Consensus 125 ----kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ----KAPELHMEIHKQG 137 (186)
T ss_dssp ----THHHHHHHHHHSS
T ss_pred ----hhHHHHHHHHHHH
Confidence 3444555554443
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.28 E-value=7.6 Score=24.91 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 403 CLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.|..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47889999999999999999988654
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.07 E-value=12 Score=21.74 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKA 149 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 149 (546)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666666666666666554
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.02 E-value=37 Score=30.10 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=40.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcC
Q 009025 271 ICSCRGKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQT 345 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~ 345 (546)
-+.++|++++|..-|.+.++.-.... ...|..-..++.+.+.++.|+.-....++.+ |.. .....-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 45556666666666666555321111 1123333334455555555555554444422 211 1111222344444
Q ss_pred CH-HHHHHHHHHHHHcCCC
Q 009025 346 PK-EELGKLVECVEKSNSK 363 (546)
Q Consensus 346 g~-~~a~~~~~~~~~~~~~ 363 (546)
.. ++|+.-|.++.+.+|.
T Consensus 182 ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhHHHHHHHHHHHHHhCcc
Confidence 33 5555555555555553
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.16 E-value=1e+02 Score=29.24 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-----hCCCCCCHH
Q 009025 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-----ELGITPDDR 333 (546)
Q Consensus 266 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~ 333 (546)
+...+.|..+|.+.+|.++.++.+..+. .+...|-.++..++..|+--.|.+-++++. +.|+..|..
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 3444566666666666666666655322 245555666666666666666655555553 245555543
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.98 E-value=90 Score=31.61 Aligned_cols=120 Identities=10% Similarity=0.099 Sum_probs=77.2
Q ss_pred hcCCHHHHH-HHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 98 RAGNVEMAF-GLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 98 ~~g~~~~A~-~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 176 (546)
..|++-.|- ++|+-++...-.|+..... ...+...|+++.+...+...... +.....+..+++....+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 567776654 4555555543344444333 33466778888888887766543 2345567778888888888899988
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
.+-+-|+...++ +...........-..|-+|++.-.|+++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888888877664 44444433333445567788888888776554
No 341
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.79 E-value=31 Score=33.17 Aligned_cols=49 Identities=12% Similarity=-0.060 Sum_probs=22.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (546)
|.+.|++++|+.+|...... .| +.+++..-..+|.+...+..|+.=...
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 44455555555555444332 22 444444444455555444444443333
No 342
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.71 E-value=95 Score=28.40 Aligned_cols=27 Identities=4% Similarity=0.119 Sum_probs=19.2
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 304 IQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
...-+..+++.+|+.+|++.....+.-
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333456788999999999987654443
No 343
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.68 E-value=75 Score=28.28 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=8.0
Q ss_pred HhcCChhHHHHHHHHHHH
Q 009025 167 GRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~ 184 (546)
...|++++|..-|.+.+.
T Consensus 106 F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALE 123 (271)
T ss_pred hhcccHHHHHHHHHHHHH
Confidence 344444444444444444
No 344
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.29 E-value=6.2 Score=32.22 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=31.5
Q ss_pred CCccccccCCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 009025 73 SPKSYIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKL 130 (546)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~ 130 (546)
.--.+-|+|..+... ..|.-.+|..+|+.|+..|-.|| .|+.|+..
T Consensus 92 kiIv~aWvNDe~tlR----------~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 92 KIIVYAWVNDEQTLR----------AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred CEEEEEEeCCCcchh----------hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 445566676655444 56777788889999998887665 46666654
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.69 E-value=56 Score=32.98 Aligned_cols=119 Identities=9% Similarity=0.108 Sum_probs=75.4
Q ss_pred cCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009025 134 AGNFDGCL-NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 212 (546)
Q Consensus 134 ~g~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 212 (546)
.|+...|- +++.-+....-.|+.....+. .....|+++.+.+.+....+. +.....+...+++...+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34444443 344444443334554443333 345678888888877665543 23345677788888888899999998
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 213 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 213 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.-+.|....++ |..........--..|-+|++...|+++....
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888876655 44444444444456678888888888887654
No 346
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.51 E-value=1.1e+02 Score=28.87 Aligned_cols=63 Identities=5% Similarity=-0.002 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009025 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALN 321 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 321 (546)
.++..+...+++.+++.+++.+-.++++..... +..-|...|..+|+...+.|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 455555556666666666666666666555433 444455566666666666666554444443
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.97 E-value=43 Score=30.15 Aligned_cols=51 Identities=8% Similarity=-0.035 Sum_probs=21.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009025 164 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215 (546)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 215 (546)
+.+.+.+.+.+++...+.-++.. +.|..+-..+++.|+-.|++++|..-++
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 33444444444444444433321 1233344444444444455544444333
No 348
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=66.18 E-value=94 Score=27.41 Aligned_cols=172 Identities=10% Similarity=0.099 Sum_probs=92.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 150 IGVKPNMITYNNLLDTMGRAK----RPWQVKTIYKEMTDNGLSPNW----NTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 150 ~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
.|.-++...++.++..+.+.. +.+-+..+-.+....++..+- .....-+..|-+.||+.+--.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 466788888998888876654 445555555656655555443 233344567777888887777776654321
Q ss_pred CCc-CHHHHHHHH-HHHHhcC--CHHHHHHHHHHHHhCCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 222 MQL-SVTLYNTLL-AMCADVG--YTDEAFEIFEDMKSSENCQPDSW-------TFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 222 ~~~-~~~~~~~li-~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
-.+ |...+..-+ .++.+.- +..--...|.+....+. .-|.. +-.+++..|-+.-++.+..++++.|-+
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~-q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDP-QNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCC-ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111111 1111110 11111122222222221 11111 123566677778888888888887765
Q ss_pred cC--------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009025 291 AG--------------FEPNLFVLTSLIQCYGKAQRTDDVVRALNR 322 (546)
Q Consensus 291 ~~--------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 322 (546)
.. ..+.-..-|.-...|.+.|..|.|+.++++
T Consensus 161 l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 161 LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 32 223344556677777888888888877763
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.93 E-value=80 Score=29.64 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
...=|.+++..+++.+++...-+--+.--+.........|-.|.+.|++..+.++-..-..... .-+...|..++..|.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYL 164 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHH
Confidence 3455889999999998876554433221122345666777788999999988888777665432 334445777777665
Q ss_pred h-----cCCHHHHHHHH
Q 009025 274 C-----RGKVSEAEAMF 285 (546)
Q Consensus 274 ~-----~g~~~~A~~~~ 285 (546)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 5 58888888776
No 350
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.83 E-value=1.2e+02 Score=28.56 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=31.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCChHHHHHHH
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT-------YASLLRAYGRARYGEDTLSVY 214 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~~~g~~~~A~~~~ 214 (546)
+.+-..+.+++++|...+.++...|+..|..+ ..-+...|...|+...-.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34445566777777777777777777655433 334455566666555444433
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.62 E-value=93 Score=27.17 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHH---HcCChHHHHHHH-------HHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 009025 102 VEMAFGLYDRARNEKWRIDPNAFSTLIKLYG---TAGNFDGCLNVY-------EEMKAIGVKPNM-ITYNNLLDTMGRAK 170 (546)
Q Consensus 102 ~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~~-------~~m~~~g~~p~~-~~~~~ll~~~~~~g 170 (546)
++.|++-++..-..+ +.|...++.-..++. +.....++.+++ ++.+.. .|+. .++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 556666666644433 236665554444433 333334444444 444443 5654 46667777765543
Q ss_pred C-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 171 R-----------PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 171 ~-----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
. +++|.+.|++... ..|+...|+.-+.+..+ |-++..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k------ap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK------APELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT------HHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh------hHHHHHHHHHHH
Confidence 2 2334444444444 35777777777766632 555555555443
No 352
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=65.55 E-value=1.9e+02 Score=30.77 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
.+..+..|+..+... +.+.-.++++++.. . + ...+..++++....|-.....-+.+.+....+ ++...-..+..
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~~~ea~~~~~~ 382 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-TPLEAAQLLAV 382 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 455666666666544 46777777777754 1 1 56788888888888887766666666655444 33333444443
Q ss_pred HHHhc-CChHHHHHHHHHHHH
Q 009025 200 AYGRA-RYGEDTLSVYREMKE 219 (546)
Q Consensus 200 ~~~~~-g~~~~A~~~~~~m~~ 219 (546)
+..-. .--.+.++.+.++.+
T Consensus 383 ~~~~~~~Pt~~~l~~l~~l~~ 403 (574)
T smart00638 383 LPHTARYPTEEILKALFELAE 403 (574)
T ss_pred HHHhhhcCCHHHHHHHHHHhc
Confidence 33322 223334444444443
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.96 E-value=15 Score=23.57 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=7.5
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 009025 165 TMGRAKRPWQVKTIYKEMT 183 (546)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~ 183 (546)
+|...|+.+.|.++++++.
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3333344444444433333
No 354
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.13 E-value=24 Score=24.63 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009025 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 149 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 149 (546)
.++....+++.++.. +-|-.-.-.+|.+|...|++++|.+.++++.+
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555442 22444455667777777777777777776653
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.99 E-value=29 Score=25.48 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=21.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEI 248 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~ 248 (546)
..++.++|+..|....++-..+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544322211 12344445555555555554443
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.99 E-value=2.7e+02 Score=31.19 Aligned_cols=116 Identities=11% Similarity=0.175 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CC-cCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCCHHHHH-
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKG--MQ-LSVTLYNTLLAMCADVGYT--DEAFEIFEDMKSSENCQPDSWTFS- 266 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~-~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~- 266 (546)
-|..|+..|...|+.++|+++|.+..+.. .. .-...+.-++.-+.+.+.. +-.+++-+...+... .-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p-~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNP-EAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCc-hhheeeeec
Confidence 46777777888888888888877776521 00 0112222344444444433 333333333332210 00000000
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009025 267 -----------SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309 (546)
Q Consensus 267 -----------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 309 (546)
..+-.|......+-+..+++.+....-..+..-.+.++.-|+.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1234566777888888888888876555677777777777764
No 357
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.52 E-value=53 Score=33.20 Aligned_cols=210 Identities=11% Similarity=0.078 Sum_probs=103.3
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI--TYNNLLDTMGRAKR 171 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~ 171 (546)
.++.|+++.+..+++ .|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 346788766655554 465555432 233444555677765 444555566555432 11234555667788
Q ss_pred hhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhcCCHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWN---TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL--YNTLLAMCADVGYTDEAF 246 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~ 246 (546)
.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+.
T Consensus 81 ~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 81 VKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 777655554 33221110 1123344455566654 4455556665554321 123444556678776655
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHh
Q 009025 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL---TSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m 323 (546)
.+++.-.... ..|..-.+.| ...+..|+.+ +.+.+.+.|..++...- .+++...+..|+.+ +.+.+
T Consensus 153 ~Ll~~g~~~~--~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~L 221 (413)
T PHA02875 153 LLIDHKACLD--IEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLF 221 (413)
T ss_pred HHHhcCCCCC--CCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHH
Confidence 5554322111 1222222233 3334556654 44555667766654321 23444345566654 34444
Q ss_pred hhCCCCCCH
Q 009025 324 PELGITPDD 332 (546)
Q Consensus 324 ~~~~~~p~~ 332 (546)
.+.|..++.
T Consensus 222 l~~gad~n~ 230 (413)
T PHA02875 222 IKRGADCNI 230 (413)
T ss_pred HHCCcCcch
Confidence 556666654
No 358
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=61.44 E-value=1.6e+02 Score=28.41 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCC-C---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 102 VEMAFGLYDRARNEK-W---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 102 ~~~A~~l~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
.+.|.+.|+.....+ . ..++.....++....+.|+.+....+++.... ..+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 456666666666531 1 34555555666666666665554444444443 2455666667777666666666666
Q ss_pred HHHHHHHCC
Q 009025 178 IYKEMTDNG 186 (546)
Q Consensus 178 ~~~~m~~~g 186 (546)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 666666643
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.96 E-value=4.2e+02 Score=33.10 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=92.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEM----KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 201 (546)
.+..+=.+.+.+.+|+..++.- ++. ......|-.+...|+..+++|...-+...-.. .|+ ....|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 3444556778888888888873 222 12234455555688999998888777664222 122 22345556
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHhcCCHHH
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-ITICSCRGKVSE 280 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 280 (546)
...|++..|...|+.+.+.+. +...+++-++......|.++.++-..+-..... .+....++++ +.+--+.++++.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhh
Confidence 678999999999999987742 236677777777777888888777666655432 2333333332 333356666666
Q ss_pred HHHHHH
Q 009025 281 AEAMFN 286 (546)
Q Consensus 281 A~~~~~ 286 (546)
......
T Consensus 1537 ~e~~l~ 1542 (2382)
T KOG0890|consen 1537 LESYLS 1542 (2382)
T ss_pred hhhhhh
Confidence 555543
No 360
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=60.23 E-value=1.7e+02 Score=28.41 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=58.4
Q ss_pred cCHHHHHHHHHHHHHcC------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 009025 119 IDPNAFSTLIKLYGTAG------------NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 186 (546)
-|+.+|-.++..--..- -.+.-+.+|+++++.. +-+......+|..+.+..+.+...+.++++....
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 37777777775433221 1345667777777663 3455667777777777777788788888887752
Q ss_pred CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHH
Q 009025 187 LSPNWNTYASLLRAYGR---ARYGEDTLSVYREM 217 (546)
Q Consensus 187 ~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~m 217 (546)
+-+...|...|+.... .-.++....+|.+.
T Consensus 96 -~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 96 -PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred -CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 2255666666655433 22344555555443
No 361
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.86 E-value=2.8e+02 Score=30.70 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=27.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHH
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMI--TYNNLLDTMGRAKRPWQVKTIYKEMT 183 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~ 183 (546)
=+.|...|+++.|+++-+. .|+.. .+..-...|.+.+++..|.++|.++.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3456667777777665432 22321 22222334566667777777776663
No 362
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.41 E-value=82 Score=24.48 Aligned_cols=51 Identities=8% Similarity=0.015 Sum_probs=26.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.+...|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 345556666665554443 2455555554433 24455555555555555555
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.14 E-value=1.6e+02 Score=27.59 Aligned_cols=250 Identities=14% Similarity=0.180 Sum_probs=146.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhc
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPN---AFSTLIKLYGTAGNFDGCLNVYEEMKAI---GV--KPNMITYNNLLDTMGRA 169 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~~~~~ll~~~~~~ 169 (546)
+....++|+.-|+...+....-... +.-.+|..+.+.|++++.++.|.+|... .+ .-+..+.|++++-....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 5668999999999998753222333 4456899999999999999999998642 11 23455677888777766
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC------cCHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDN-----GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-----GMQ------LSVTLYNTLL 233 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~~------~~~~~~~~li 233 (546)
.+.+....+|+.-++. .-..--.|-+.|...|...+.+.+..+++.++... |-. .=...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666666555543321 00111124456778888888888888888887543 110 0124677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHH-HHHH---HcCCCCCHH---HHH
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-----ICSCRGKVSEAEAMF-NEML---EAGFEPNLF---VLT 301 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~-----~~~~~g~~~~A~~~~-~~m~---~~~~~p~~~---~~~ 301 (546)
..|....+-.....++++.......-|...... +|+ +..+.|++++|..-| +..+ +.|- |... -|-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs-pRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCC-cchhHHHHHH
Confidence 888888888888888887665433244444333 333 344667888775443 3333 2232 2222 244
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhC--CCCCCHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPEL--GITPDDRFCGCLLNVMTQTPKEELGKLV 354 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~a~~~~ 354 (546)
.|.+.+.++|- .-|+.-..+ .-.|.....+.++.+|....-.+-.+++
T Consensus 277 VLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il 326 (440)
T KOG1464|consen 277 VLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERIL 326 (440)
T ss_pred HHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 44444444431 011111111 1233445677888888766544444433
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.97 E-value=71 Score=25.97 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 219 (546)
..+-++.+....+.|+..+...-++++-+.+++..|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555443
No 365
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=58.88 E-value=1.8e+02 Score=28.28 Aligned_cols=188 Identities=12% Similarity=0.130 Sum_probs=100.0
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCh
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV----KPNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~g~~ 172 (546)
-+.|+++............ .++...|.++... +.|+++++....+.+...-. ......|......+.+...+
T Consensus 9 Wrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L 84 (352)
T PF02259_consen 9 WRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQL 84 (352)
T ss_pred HhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHH
Confidence 4778888855555554432 2355555555544 78889988888877754310 01122333333333333333
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCChHHHHHHH---HHHHH--cCCCcCHHHHHHHHHHHHhcCCH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-----ARYGEDTLSVY---REMKE--KGMQLSVTLYNTLLAMCADVGYT 242 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-----~g~~~~A~~~~---~~m~~--~g~~~~~~~~~~li~~~~~~g~~ 242 (546)
.+..++.+-..... .+......++..... ..+++.-..++ ..+.. ........+|..++..+.+.|.+
T Consensus 85 ~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~ 162 (352)
T PF02259_consen 85 VELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNF 162 (352)
T ss_pred HHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCc
Confidence 33333332221110 012222222222211 12222111111 11111 11223457888999999999999
Q ss_pred HHHHHHHHHHHhCCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 243 DEAFEIFEDMKSSEN-C-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 243 ~~A~~~~~~m~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+.|...+..+...+. . ..+......-.+..-..|+-.+|...++....
T Consensus 163 ~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 163 QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999887431 0 11344555566777888999999999988877
No 366
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.66 E-value=2e+02 Score=28.68 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=15.0
Q ss_pred CChhHHHHHHHHhhh-----CCCCCCHHHHHHHHH
Q 009025 311 QRTDDVVRALNRLPE-----LGITPDDRFCGCLLN 340 (546)
Q Consensus 311 g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~ 340 (546)
+++...+++++++.. .-+.|...+.-.+|.
T Consensus 318 sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 318 SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 456666666665542 234455554444443
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.42 E-value=34 Score=25.13 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=5.3
Q ss_pred HHHHHHHHhcCCH
Q 009025 335 CGCLLNVMTQTPK 347 (546)
Q Consensus 335 ~~~ll~~~~~~g~ 347 (546)
+..++.+++..|+
T Consensus 46 lG~l~qA~~e~Gk 58 (80)
T PF10579_consen 46 LGYLIQAHMEWGK 58 (80)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 368
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.32 E-value=1.7e+02 Score=27.87 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCccCHHHHHHHHH-HHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 107 GLYDRARNEKWRIDPNAFSTLIK-LYGTAGN-FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 107 ~l~~~~~~~g~~~~~~~~~~li~-~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
.+|.-+.-.+..|++..++.|.. .+.+.|= ..-|.++|+..... ...+.++..+-+.+.-+.
T Consensus 151 A~~Tal~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~r 214 (412)
T KOG2297|consen 151 AMLTALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDR 214 (412)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhH
Confidence 34444433323556777776664 4445552 34477777766532 123456665555443333
No 369
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.07 E-value=33 Score=23.86 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 009025 231 TLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555554443
No 370
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.54 E-value=3e+02 Score=30.42 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCH--HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDP--NAFSTLIKLYGTAGNFDGCLNVYEEMK 148 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 148 (546)
..|++++|++.-+.- |+. .++..-...|.+.+++..|-++|.++.
T Consensus 370 d~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 370 DKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred hcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 667777776654332 221 133334456777889999999998884
No 371
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.17 E-value=43 Score=21.87 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=15.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009025 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 304 (546)
+.|-+.++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555554444444443
No 372
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=57.14 E-value=2.8e+02 Score=29.89 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
.+|-.|.++|++++|.++..+.... .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4677788999999999999655443 344455667777777665
No 373
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=56.56 E-value=20 Score=19.52 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=23.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 400 YCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
.|..+...+...|+++.|...|+..++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 5678888899999999999999887653
No 374
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.42 E-value=93 Score=24.19 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=6.1
Q ss_pred HhcCCHHHHHHHHH
Q 009025 273 SCRGKVSEAEAMFN 286 (546)
Q Consensus 273 ~~~g~~~~A~~~~~ 286 (546)
.+.|++++|..+.+
T Consensus 50 mNrG~Yq~Al~l~~ 63 (115)
T TIGR02508 50 MNRGDYQSALQLGN 63 (115)
T ss_pred HccchHHHHHHhcC
Confidence 34444444444443
No 375
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.35 E-value=80 Score=27.62 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhCCCccC--HHHH-----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 101 NVEMAFGLYDRARNEKWRID--PNAF-----STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~--~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
-++.|+.+++.+.+.-..|. ...- ...+-.|.+.|.+++|.+++++... .|+......-+....+.++
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 37788888888876532221 0111 1234567777888888888877766 3455554544444444433
No 376
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.29 E-value=1.8e+02 Score=27.44 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=7.2
Q ss_pred HHHHHHcCChHHHHH
Q 009025 128 IKLYGTAGNFDGCLN 142 (546)
Q Consensus 128 i~~~~~~g~~~~A~~ 142 (546)
|.+++..++|.+++.
T Consensus 90 IQALAEmnrWreVLs 104 (309)
T PF07163_consen 90 IQALAEMNRWREVLS 104 (309)
T ss_pred HHHHHHHhhHHHHHH
Confidence 444555555554443
No 377
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.99 E-value=3.2e+02 Score=30.26 Aligned_cols=287 Identities=15% Similarity=0.122 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHhc----CChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHH
Q 009025 138 DGCLNVYEEMKAIGVK-------PNMITYNNLLDTMGRA----KRPWQVKTIYKEM----TDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 138 ~~A~~~~~~m~~~g~~-------p~~~~~~~ll~~~~~~----g~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~ 202 (546)
+....+++++...|+- ++-+-|..++.-+.+. +......+++... ...|. |+ --|.-..
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~-~~-----eAI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGL-PS-----EAIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCC-hH-----HHHHHHH
Confidence 3456677777776642 2334555555544332 2223333333322 33443 22 2334445
Q ss_pred hcCChHHHHHHHHHHHHc---------------CCCcCHHHHH--H--HH--HHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009025 203 RARYGEDTLSVYREMKEK---------------GMQLSVTLYN--T--LL--AMCADVGYTDEAFEIFEDMKSSENCQPD 261 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~--~--li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 261 (546)
+.|+++.|..++++.... ++ |+....+ . ++ -......++++|..++.+....-. .|+
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~-~~~ 449 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLK-APM 449 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhC-cCc
Confidence 677887777777654111 11 2221111 1 22 223457889999999888765432 222
Q ss_pred HH-------HHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009025 262 SW-------TFSSMIT-ICSCRGKVSEAEAMFNEMLEA----GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 329 (546)
Q Consensus 262 ~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 329 (546)
.. .|+.|-. .....|++++|.++-+..... -..+....+..+..+..-.|++++|..+..+..+..-+
T Consensus 450 ~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 450 HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 21 2333322 234578899999888876653 23455677788888888899999999988777653222
Q ss_pred CCHHH---HHHH--HHHHhcCCH---HHHHHHHHHH----HHcCCChhH---HHHHHHHhhhhhcchHHHHHHHHHhccc
Q 009025 330 PDDRF---CGCL--LNVMTQTPK---EELGKLVECV----EKSNSKLGY---VVKLLLEEQDIEGDFKKEATELFNSISK 394 (546)
Q Consensus 330 p~~~t---~~~l--l~~~~~~g~---~~a~~~~~~~----~~~~~~~~~---~~~~L~~~~~~~g~~~~~A~~~~~~~~~ 394 (546)
-|... +..+ ...+...|. .+..+.+... .+..|.... ....+..++.+......+|..-++-...
T Consensus 530 ~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~ 609 (894)
T COG2909 530 HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSV 609 (894)
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhh
Confidence 23322 2222 122334452 3333333222 222333222 2233444444322122222222221111
Q ss_pred -Ccc-ch---hhHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 395 -DVK-KA---YCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 395 -~~~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
.+. .. .+..|+..+...|+.++|...++++......++
T Consensus 610 ~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 610 YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 111 11 223677888899999999999999886665443
No 378
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=55.54 E-value=1.9e+02 Score=27.42 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=40.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTA----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----A 169 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 169 (546)
..+++..|...+......+ +......+...|... .+..+|.++|+.+.+.|. ......|...+.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 5566667777666666532 223334444444332 345556666665555442 1222223333333 2
Q ss_pred CChhHHHHHHHHHHHCCC
Q 009025 170 KRPWQVKTIYKEMTDNGL 187 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~ 187 (546)
.|..+|...|++..+.|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 127 LDLVKALKYYEKAAKLGN 144 (292)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 245555555555555543
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.73 E-value=83 Score=25.59 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
+..+-++.+...++.|+.....+-+++|.+.+++..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455556666677778777888888888888888888888777654
No 380
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=54.71 E-value=2.8e+02 Score=29.14 Aligned_cols=186 Identities=8% Similarity=0.030 Sum_probs=89.1
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 197 (546)
.++..+|+.-+..-.+.|+++.+.-+|+...-.- ..=...|--.+.-+...|+.+.|..++....+--+ ++......+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~ 371 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLL 371 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHH
Confidence 3455566666666666666666666666654311 00112333333333444666666655555444322 122111112
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCCHHHHHHHHHH-
Q 009025 198 LRAYG-RARYGEDTLSVYREMKEKGMQLSV-TLYNTLLAMCADVGYTDEAF---EIFEDMKSSENCQPDSWTFSSMITI- 271 (546)
Q Consensus 198 l~~~~-~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~~~~~~~~~~li~~- 271 (546)
=..+. ..|+++.|..+++.+...- |+. ..-..-+....+.|..+.+. +++..... | .-+......+.--
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~--~~~~~i~~~l~~~~ 446 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G--KENNGILEKLYVKF 446 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c--ccCcchhHHHHHHH
Confidence 12222 2356777777776665542 332 22222344455566666655 33333332 2 2222222222222
Q ss_pred ----HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009025 272 ----CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311 (546)
Q Consensus 272 ----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 311 (546)
+.-.++.+.|..++.++.+. ..++...|..++......+
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22356677777777777664 2345666666666655544
No 381
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=53.89 E-value=2e+02 Score=27.23 Aligned_cols=190 Identities=13% Similarity=0.051 Sum_probs=122.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 009025 133 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----A 204 (546)
Q Consensus 133 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 204 (546)
..+++..+...+......+. ......+...+.. ..+..+|.+.|..+.+.|. ......|..+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 45677788888877776442 2333334444333 3457889999998877764 3344446666655 4
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh---
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-------YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC--- 274 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~--- 274 (546)
.+..+|...|++..+.|..+-..+...+...|..-. +...|...|.++-..+ +......|...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCC
Confidence 488999999999999885533233444444444431 3347999999988866 34445555555533
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------ChhHHHHHHHHhhhCCCCCCHHHHH
Q 009025 275 -RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ---------------RTDDVVRALNRLPELGITPDDRFCG 336 (546)
Q Consensus 275 -~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~~~~p~~~t~~ 336 (546)
..+..+|...|.+..+.|. ......+- .+...| +...|...+......+.........
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 4478999999999988775 22222222 444444 7888899999888877766666555
No 382
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=53.59 E-value=3.9e+02 Score=30.49 Aligned_cols=31 Identities=26% Similarity=0.183 Sum_probs=21.9
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHH
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDR 111 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~ 111 (546)
....||+-.|..+..+...+++.+|..+.+.
T Consensus 689 EtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 689 ETIYPRALVLAGIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred hhhccHhHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4556777777777777788888887665543
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.24 E-value=96 Score=23.37 Aligned_cols=32 Identities=3% Similarity=0.074 Sum_probs=13.7
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
|+.+.|.+++..+. +| ...|..++.++...|.
T Consensus 50 g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QK----EGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCc
Confidence 44444444444444 31 2234444444444444
No 384
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.18 E-value=1.4e+02 Score=25.13 Aligned_cols=82 Identities=12% Similarity=0.266 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIG-----VKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTYAS 196 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ 196 (546)
..|.++.-....+++...+.+++.+.... -..+...|++++.+.++..- ---+..+|..|.+.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34566666666667777776666663211 02344456666666655444 3345556666666556666666666
Q ss_pred HHHHHHhc
Q 009025 197 LLRAYGRA 204 (546)
Q Consensus 197 ll~~~~~~ 204 (546)
+|.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66665543
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.13 E-value=67 Score=28.42 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 188 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
.|+..+|..++.++...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555666666666666666666555555543
No 386
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.99 E-value=2.1e+02 Score=27.21 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLFV 299 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 299 (546)
+++.....|..+|.+.+|.++.++....+ +.+...+-.|+..+...|+--.|.+-++++.+ .|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 45556688899999999999999998876 77888899999999999998888887777653 355554433
No 387
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.87 E-value=57 Score=21.28 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=3.9
Q ss_pred HHHHHHHHHCC
Q 009025 176 KTIYKEMTDNG 186 (546)
Q Consensus 176 ~~~~~~m~~~g 186 (546)
..++++|.+.|
T Consensus 22 ~~~l~~l~~~g 32 (48)
T PF11848_consen 22 KPLLDRLQQAG 32 (48)
T ss_pred HHHHHHHHHcC
Confidence 33333333333
No 388
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.14 E-value=97 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 299 VLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
-|..|+.-|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888999999999999988876
No 389
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.19 E-value=2.8e+02 Score=28.10 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhC---CC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 102 VEMAFGLYDRARNE---KW-RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 102 ~~~A~~l~~~~~~~---g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
.++...+++..... |. ..+......++... .|+...++.+++.+...+... ..+...+
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~ 214 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEE 214 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHH
Confidence 45556666655432 33 44555555554433 678888887777765431111 1222233
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-----HHHHHHHH
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGR---ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY-----TDEAFEIF 249 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~A~~~~ 249 (546)
++...... ...+......++.++.+ ..+.+.|+..+..|.+.|..|....-..++.++-..|. ..-|...+
T Consensus 215 ~~~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~ 293 (413)
T PRK13342 215 ALQKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAA 293 (413)
T ss_pred HHhhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 33322111 11122233444445444 47888888889999888887776666666666655553 33455556
Q ss_pred HHHHhCC
Q 009025 250 EDMKSSE 256 (546)
Q Consensus 250 ~~m~~~~ 256 (546)
+-....|
T Consensus 294 ~~~~~~g 300 (413)
T PRK13342 294 DAVERIG 300 (413)
T ss_pred HHHHHhC
Confidence 6666666
No 390
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.03 E-value=60 Score=34.54 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
|..-+.-+..+++.. ....+.+..+-.-.+...-.-++..|.+.|..+.|.++.+.+-..- ....-|..-+..+.
T Consensus 375 W~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 375 WQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSWFI 449 (566)
T ss_dssp HHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHHHH
Confidence 444444444444332 3344444433222344555666666666666666666666554431 12334555666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009025 274 CRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~ 290 (546)
+.|+...+..+-+.+.+
T Consensus 450 ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLE 466 (566)
T ss_dssp -----------------
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666665555555543
No 391
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.81 E-value=1.2e+02 Score=26.67 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 45667888888888888888776
No 392
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.06 E-value=1.5e+02 Score=24.82 Aligned_cols=82 Identities=10% Similarity=0.160 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcCHHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-----SPNWNTYASLLRAYGRARY-GEDTLSVYREMKEKGMQLSVTLYNT 231 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ 231 (546)
..|.++.-....+++.....+++.+..... ..+...|++++.+..+..- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456677766777777777777777633110 1234456666666655544 3345566666666666666666666
Q ss_pred HHHHHHhc
Q 009025 232 LLAMCADV 239 (546)
Q Consensus 232 li~~~~~~ 239 (546)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66665543
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.21 E-value=4.1e+02 Score=29.49 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=28.1
Q ss_pred cCChHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 204 ARYGEDTLSVYREMKEK----GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.|++++|+++-+..... -..+....+..+..+..-.|++++|..+.++..+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 45666666665554432 1223445555555666666666666666655544
No 394
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.19 E-value=1.4e+02 Score=24.24 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 286 (546)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 286 (546)
++.++|+.|...|+..--..-|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444433334444444444444445554444443
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.81 E-value=78 Score=28.00 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.|+..+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455555555555555555444444443
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.71 E-value=92 Score=28.91 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=12.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEM 147 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m 147 (546)
.|...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555556666666655555
No 397
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.30 E-value=2.5e+02 Score=26.78 Aligned_cols=53 Identities=6% Similarity=0.041 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.++..+.+..++.+..+.+..+.. ...-...++.+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455556666666666666665542 33444567777788999999988887764
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.28 E-value=72 Score=33.19 Aligned_cols=148 Identities=11% Similarity=0.047 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH
Q 009025 154 PNMITYNNLLDTMGRA--KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 231 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 231 (546)
|+..+..+++.-.... ...+.+..++..|.. .+.|--...|...--+.-.|+...|.+++.........-..+....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 4555554444333222 122344445544443 2233333333222223445777778877776654322222333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
|.....+.|...+|..++.+..... .....++-.+.++|....+++.|++.|++..+.... +.+.-+.|..
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~ 718 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKL 718 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 5555666677777877777766554 344456777888888888888888888887765432 3444444433
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.75 E-value=92 Score=23.71 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=29.7
Q ss_pred hhcCCHHHHHHHH----HHHHhCCCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009025 97 TRAGNVEMAFGLY----DRARNEKWRID----PNAFSTLIKLYGTAGNFDGCLNVYEEMKA 149 (546)
Q Consensus 97 ~~~g~~~~A~~l~----~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 149 (546)
.+.|++..|++.+ +.....+.... ....-.+.......|++++|+..+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3778888885544 44443332221 12222344555667888888877777654
No 400
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.99 E-value=2.5e+02 Score=25.87 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=48.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH--H
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFV-LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--E 348 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~ 348 (546)
|....+++.|...|.+.+. +.|+..+ |+.=+.++.+..+++.+..--.+.++ +.||.+.-..++..+..... +
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3445567777776666555 3466644 45556677777777777766655554 56777655555544443322 6
Q ss_pred HHHHHHHHH
Q 009025 349 ELGKLVECV 357 (546)
Q Consensus 349 ~a~~~~~~~ 357 (546)
+++..+...
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666655544
No 401
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.84 E-value=2.5e+02 Score=27.26 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=40.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH-HHHHH
Q 009025 235 MCADVGYTDEAFEIFEDMKSSEN--CQPDSWTFS--SMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLFV-LTSLI 304 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~-~~~li 304 (546)
..-+.++.++|+++++++.+.-. -.|+.+.|. ...+.+...|+..++.+++++..+ .++.|++.+ |..+-
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 33444556666666665543210 034444443 345556667777777777766665 455554433 33333
Q ss_pred HHH-HhcCChhH
Q 009025 305 QCY-GKAQRTDD 315 (546)
Q Consensus 305 ~~~-~~~g~~~~ 315 (546)
.-| -..|++..
T Consensus 164 sqYyk~~~d~a~ 175 (380)
T KOG2908|consen 164 SQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHhHHH
Confidence 333 33344443
No 402
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.58 E-value=24 Score=28.92 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=21.7
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 235 (546)
.|.-.+|.++|.+|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3555668888888888888776 36676654
No 403
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=44.57 E-value=3.3e+02 Score=27.02 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=66.3
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHhhhC------CCCC
Q 009025 261 DSWTFSSM---ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG-KAQRTDDVVRALNRLPEL------GITP 330 (546)
Q Consensus 261 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~------~~~p 330 (546)
|..-|.++ |..+.+.|.+..|.++.+-+...+..-|......+|+.|+ ++++++-.+++++..... ..-|
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 44444444 5678889999999999999998776667777777888875 677888788888776541 1123
Q ss_pred CHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHcCC
Q 009025 331 DDRFCGCLLNVMTQTPK---------------EELGKLVECVEKSNS 362 (546)
Q Consensus 331 ~~~t~~~ll~~~~~~g~---------------~~a~~~~~~~~~~~~ 362 (546)
+ ..|+..+..+...+. ++|...+.+....-|
T Consensus 179 n-~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 179 N-FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred c-HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 3 345554444443333 566666666555444
No 404
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.53 E-value=3e+02 Score=26.49 Aligned_cols=109 Identities=11% Similarity=0.074 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 242 TDEAFEIFEDMKSSENC---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 318 (546)
.++|.+.|+.....+.. ..+......++....+.|+.+.-..+++..... .+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 45677777777764321 234455556666667777766655555555542 466677778888888888877777
Q ss_pred HHHHhhhCC-CCCCHHHHHHHHHHHh-cC--CHHHHHHHHH
Q 009025 319 ALNRLPELG-ITPDDRFCGCLLNVMT-QT--PKEELGKLVE 355 (546)
Q Consensus 319 ~~~~m~~~~-~~p~~~t~~~ll~~~~-~~--g~~~a~~~~~ 355 (546)
+++.....+ +.+.. .. .++.++. .. |.+.+.+++.
T Consensus 223 ~l~~~l~~~~v~~~d-~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-HH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HH-HHHHHHhcCChhhHHHHHHHHH
Confidence 777777643 44444 22 3333333 22 2355655543
No 405
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.20 E-value=1.4e+02 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=10.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNG 186 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g 186 (546)
++..+.+.++.-.|.++|+++.+.+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3333333333344444444444433
No 406
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.10 E-value=83 Score=31.74 Aligned_cols=176 Identities=15% Similarity=0.040 Sum_probs=84.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC
Q 009025 131 YGTAGNFDGCLNVYEEMKAIGVKPNMIT--YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN--TYASLLRAYGRARY 206 (546)
Q Consensus 131 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~ 206 (546)
.++.|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...++.|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3445665444 44445676665432 3345556667777654 44555666655432 12334556667888
Q ss_pred hHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHhcCCHHHH
Q 009025 207 GEDTLSVYREMKEKGMQLSVT---LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT--FSSMITICSCRGKVSEA 281 (546)
Q Consensus 207 ~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~~li~~~~~~g~~~~A 281 (546)
.+.+..+++ .|...+.. .-.+.+...+..|+.+-+..+ .+.|. .++... -.+.+...+..|+.+-+
T Consensus 81 ~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~L----l~~ga-d~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 81 VKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLL----IARGA-DPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred HHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHH----HhCCC-CCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 877655554 33211110 012234444566776544444 44442 333211 11234445567776654
Q ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 282 EAMFNEMLEAGFEPNL---FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
..+ .+.|..++. .-++.|.. .+..|+.+ +.+.+.+.|..++.
T Consensus 152 ~~L----l~~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~ 196 (413)
T PHA02875 152 ELL----IDHKACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDY 196 (413)
T ss_pred HHH----HhcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCc
Confidence 444 344443332 22233333 34456654 34445566666654
No 407
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.85 E-value=1.6e+02 Score=31.37 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=23.1
Q ss_pred chhhhcCCHHHHHHHHHHHHhC--CCccCHHHHHHHHHHHHHcCChH
Q 009025 94 SYDTRAGNVEMAFGLYDRARNE--KWRIDPNAFSTLIKLYGTAGNFD 138 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~ 138 (546)
..|...|++-.+.++++..... |-+.-...||..|+.+.+.|.++
T Consensus 36 eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 36 EACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 3344556666666666555542 22333445555555555555543
No 408
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.75 E-value=1.6e+02 Score=23.23 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=8.3
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 009025 238 DVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~ 256 (546)
+.|--+++...+.++...|
T Consensus 81 klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 81 KLGLASALESRLTRLASSG 99 (116)
T ss_dssp HCT-HHHHHHHHHHHCT-S
T ss_pred hhccHHHHHHHHHHHHhCC
Confidence 4454555555555444443
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.88 E-value=1.5e+02 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 009025 268 MITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~ 289 (546)
+.......|+.++|...+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444555566666666665554
No 410
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.59 E-value=3.3e+02 Score=26.42 Aligned_cols=148 Identities=14% Similarity=0.066 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHcCCCc-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQL-------------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
++.+....++..+++.+..| |...++.|.. .+..++++-.+..++..+...-.--...+......
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~--~neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKK--ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009025 272 CSCRGKVSEAEAMFNEMLEA----GFEPNLFVLT-SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 346 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 346 (546)
|++-|+.+.|.+.+.+-.+. |.+.|++-+. .|.-.|....-..+-++..+.+.+.|..-+..---.+-.+.....
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms 193 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS 193 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH
Q ss_pred H---HHHHHHH
Q 009025 347 K---EELGKLV 354 (546)
Q Consensus 347 ~---~~a~~~~ 354 (546)
- .+|..+|
T Consensus 194 vR~Fk~Aa~Lf 204 (393)
T KOG0687|consen 194 VRNFKEAADLF 204 (393)
T ss_pred HHhHHHHHHHH
No 411
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.02 E-value=52 Score=31.26 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 009025 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 153 (546)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 153 (546)
|+..|....+.||+++|+.++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 446666666666666666666666666654
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.75 E-value=3.7e+02 Score=26.85 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=35.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHHHHc
Q 009025 165 TMGRAKRPWQVKTIYKEMTDNGLSPNWN--TYASLLRAYGR--ARYGEDTLSVYREMKEK 220 (546)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~--~g~~~~A~~~~~~m~~~ 220 (546)
.+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778888888888888876 544443 44445555543 45667787777776654
No 413
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.34 E-value=4.8e+02 Score=28.04 Aligned_cols=327 Identities=13% Similarity=0.075 Sum_probs=159.6
Q ss_pred hcCCHHHHHHHHHHHHhCC---CccCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCCC---------CCCHHHHHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEK---WRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGV---------KPNMITYNNLL 163 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~ll 163 (546)
..++...|++.++.+...- ..+-..++-.++.+.. +.+..+++++.++.+..... .|-..+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3479999999998877531 2344455555665554 34667778888877743221 24566777777
Q ss_pred HHH--HhcCChhHHHHHHHHHHH-------CC----------CC-------------CCH---------HHHHHHHH--H
Q 009025 164 DTM--GRAKRPWQVKTIYKEMTD-------NG----------LS-------------PNW---------NTYASLLR--A 200 (546)
Q Consensus 164 ~~~--~~~g~~~~a~~~~~~m~~-------~g----------~~-------------p~~---------~~~~~ll~--~ 200 (546)
+.+ ...|+++.+...++++.+ .. ++ +.. ....-++. .
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~ 310 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH 310 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH
Confidence 765 456776666655554422 10 00 000 01111122 2
Q ss_pred HHhcCChHHHHHHHHHHHHc--------CCCc--------CHHHHHHHHH---------HHHhcCCHHHHHHHHHHHHhC
Q 009025 201 YGRARYGEDTLSVYREMKEK--------GMQL--------SVTLYNTLLA---------MCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~--------g~~~--------~~~~~~~li~---------~~~~~g~~~~A~~~~~~m~~~ 255 (546)
++..+..++|.+++++..+. ...+ +...|...+. ..+-.+++..|...+++|...
T Consensus 311 ~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 311 NLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL 390 (608)
T ss_pred HhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 23344454666666544321 0011 1122222222 224568899999999988764
Q ss_pred CCCCCC-----HHHHHHHHH--HHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHH--HHHHH--hcCChhH-
Q 009025 256 ENCQPD-----SWTFSSMIT--ICSCRGKVSEAEAMFN--------EMLEAGFEPNLFVLTSL--IQCYG--KAQRTDD- 315 (546)
Q Consensus 256 ~~~~~~-----~~~~~~li~--~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l--i~~~~--~~g~~~~- 315 (546)
..-.|+ ...+...+. .+-..|+++.|...|. .....+...+...+..+ +-.+. .....++
T Consensus 391 ~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 391 CQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 211121 223333333 3445799999999997 44444444444443321 11222 2222233
Q ss_pred -HHHHHHHhhhC-CCCCC--HHHHHHH-HHHHhcCCH---HHHHHHHHHHH-----HcCCC-hhH-HHHHHHHhhhhhcc
Q 009025 316 -VVRALNRLPEL-GITPD--DRFCGCL-LNVMTQTPK---EELGKLVECVE-----KSNSK-LGY-VVKLLLEEQDIEGD 380 (546)
Q Consensus 316 -A~~~~~~m~~~-~~~p~--~~t~~~l-l~~~~~~g~---~~a~~~~~~~~-----~~~~~-~~~-~~~~L~~~~~~~g~ 380 (546)
+-++++.+... .-.|+ ..++..+ +.++..... .++...+.... +.+.. .-. .++.++..+. .|+
T Consensus 471 ~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~ 549 (608)
T PF10345_consen 471 ELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGD 549 (608)
T ss_pred HHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC
Confidence 67777766531 22333 2344444 333332221 24444333222 22222 222 3366665554 343
Q ss_pred hHHHHHHHHH---hcccCc--cchhhHH-----HHHHHHhcCCHHHHHHHHHHHH
Q 009025 381 FKKEATELFN---SISKDV--KKAYCNC-----LIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 381 ~~~~A~~~~~---~~~~~~--~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~ 425 (546)
.-+.+...-. .....+ ....|.. +.+.|...|+.++|..+..+..
T Consensus 550 ~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 550 VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3233322222 222222 3346633 3345778899999998887654
No 414
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.13 E-value=49 Score=31.42 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=23.7
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009025 259 QPDSWT-FSSMITICSCRGKVSEAEAMFNEMLEAGFE 294 (546)
Q Consensus 259 ~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 294 (546)
.||..+ |+..|+.-.+.||+++|+.++++.++.|..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344444 346777777777777777777777776655
No 415
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.53 E-value=1.7e+02 Score=23.06 Aligned_cols=26 Identities=8% Similarity=0.371 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777776665
No 416
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.47 E-value=1.6e+02 Score=22.24 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=34.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009025 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 211 (546)
Q Consensus 140 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 211 (546)
+.++++.+.+.|+ .+..-...+-.+-...|+.+.|.+++..+. .| ...|...+.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 4455555555553 233333333333334566666666666666 43 224566666666666554443
No 417
>PRK10941 hypothetical protein; Provisional
Probab=40.30 E-value=3.2e+02 Score=25.74 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++..++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344555666666666666666666543 33444444445556666666666666655554
No 418
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.06 E-value=3.5e+02 Score=26.01 Aligned_cols=43 Identities=9% Similarity=0.233 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 212 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 212 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
++++.|.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4444444555555444444444444444445555555555544
No 419
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.00 E-value=1.4e+02 Score=27.66 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 266 SSMITICSCRGKVSEAEAMFNEMLEA----G-FEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 266 ~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
..+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.++.+.+.-+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35566677777777777777766421 1 1122334445556666666666666554444
No 420
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.99 E-value=2.1e+02 Score=31.56 Aligned_cols=158 Identities=17% Similarity=0.090 Sum_probs=96.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 231 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
++|..+.+.|..+-|+.+.++-..+ ...+..+|+++.|++.-.++ -+..+|..|...-...
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHh
Confidence 4566667777777777666543221 13456788888887765543 2667899999988889
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHH
Q 009025 311 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 389 (546)
Q Consensus 311 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~ 389 (546)
|+.+-|...|++... |..|--.|.-.|+ ++..++....+..+.....+.+.|-. | .+++-..++
T Consensus 686 gn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl-----~-dv~ervkIl 750 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYL-----G-DVKERVKIL 750 (1202)
T ss_pred cchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHh-----c-cHHHHHHHH
Confidence 999988888887764 2223333445666 66666655554444333333333322 3 346666666
Q ss_pred HhcccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 390 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 390 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+.-..-| ..|- .-..+|.-++|.++.++....+
T Consensus 751 ~n~g~~~--layl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 751 ENGGQLP--LAYL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HhcCccc--HHHH----HHhhcCcHHHHHHHHHhhcccc
Confidence 6654322 1221 1245788889999888876533
No 421
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=38.55 E-value=1.2e+02 Score=31.71 Aligned_cols=146 Identities=10% Similarity=-0.071 Sum_probs=91.0
Q ss_pred cCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 009025 119 IDPNAFSTLIKLYGTAG--NFDGCLNVYEEMKAIGVKPNMITYNNL---LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l---l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 193 (546)
|+..+.-+++.-....- ..+-+-.++..|.. |+...|.+| .--+-..|+...|.+.+.........-..+.
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 45555555544433321 22335555555553 333333322 2223446888888888877665322222334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
...|.+...+.|...+|-.++.+..... .....++-.+.++|....+++.|++.|++..+.. +.+.+.-+.|...
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT--TKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC--CCChhhHHHHHHH
Confidence 4456666777788888999988877654 2355778888999999999999999999988875 4455555555544
No 422
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.35 E-value=2e+02 Score=27.45 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=59.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
.++..+.+.++.....+.++.+.. ...-...+..+...|++..|++++.+..+. .. ...-|+.+=..-.+..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~~~L~ 174 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLSSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHhHHHH
Confidence 445555556666666666666543 223345666667788888888877666542 00 1111111111111111
Q ss_pred Ch-H----HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 206 YG-E----DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 206 ~~-~----~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
+. + .....|..+.. ..|...|..++.+|...|+...+.+-+.
T Consensus 175 e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 11 0 11122233322 3478888888888888887766554433
No 423
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.11 E-value=4.4e+02 Score=26.65 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 275 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 275 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
.++.+.|..++..|.+.|..|....-..++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 36677777777777776665554443333333
No 424
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.38 E-value=3.7e+02 Score=25.56 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQPDSWT-FSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 296 (546)
...+..+...|++.++.+.+.+...+..+. |. +.|... -..|.-.|....-+++.++..+.|.+.|...+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~-KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL-KIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc-chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 455666777777777777777666554432 32 333321 11233334444446666667777777665433
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.03 E-value=2.3e+02 Score=23.06 Aligned_cols=57 Identities=5% Similarity=0.074 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNR 322 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 322 (546)
-|..+--.|++.-+ .+.++|..|...|+.-. ..-|..-...+...|++++|.++|+.
T Consensus 67 RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 67 RYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33333334444333 89999999998877655 55677888888899999999999875
No 426
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.97 E-value=1.9e+02 Score=27.72 Aligned_cols=72 Identities=8% Similarity=0.304 Sum_probs=56.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----------cCCHHHH
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----------VGYTDEA 245 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----------~g~~~~A 245 (546)
.++|+.|...++.|.-.++.-+.-.+.+.=.+.+++.+|+.+... ..-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 568888888889999999888888888888899999999988763 3336666666654 5888888
Q ss_pred HHHHHHH
Q 009025 246 FEIFEDM 252 (546)
Q Consensus 246 ~~~~~~m 252 (546)
+++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 8888753
No 427
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.16 E-value=4.7e+02 Score=29.14 Aligned_cols=129 Identities=17% Similarity=0.122 Sum_probs=67.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
.+|+++.|++.-..+- +..+|..|.......|+.+-|...|++.+.. +-|--.|.-.|+.++..+
T Consensus 655 e~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred hcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHH
Confidence 5666666665544432 6667777777777777777777777665532 222223444566665555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
+.+....+ -|. +-......| .|+.++-.++++. .|.. + ..|-+ -...|.-++|.++.++....+
T Consensus 720 m~~iae~r---~D~-~~~~qnalY--l~dv~ervkIl~n---~g~~-~-laylt----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 720 MMKIAEIR---NDA-TGQFQNALY--LGDVKERVKILEN---GGQL-P-LAYLT----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHhh---hhh-HHHHHHHHH--hccHHHHHHHHHh---cCcc-c-HHHHH----HhhcCcHHHHHHHHHhhcccc
Confidence 44444322 121 111112222 3555555555443 2222 1 22221 134677889999998887644
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.08 E-value=1.8e+02 Score=31.02 Aligned_cols=91 Identities=18% Similarity=0.101 Sum_probs=64.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhH------HHHHHHHHHHCCCCCCHHHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQ------VKTIYKEMTDNGLSPNWNTYASL 197 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~------a~~~~~~m~~~g~~p~~~~~~~l 197 (546)
+|+.+|..+|++.++.++++..... |-+.-...||..|+...+.|.++- +.++++... +.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999998765 223345678888999999997643 444444444 44578899888
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 009025 198 LRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~ 219 (546)
+.+-..--.-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8877664444444455555554
No 429
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.97 E-value=5e+02 Score=26.32 Aligned_cols=207 Identities=8% Similarity=-0.056 Sum_probs=107.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 207 (546)
|.++...| ..+...+-...... ++...+.....++....+...+..+.+.+. .++..+-..+.+++.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCch
Confidence 66666677 55666666665432 333444444444443333332333333332 24566677788888777776
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
+-...+.. +.+. .+.....+.+.++...+. ++...+....+ .++...-..-+.+++..+..+. ...+..
T Consensus 117 ~a~~~L~~-~L~~---~~p~vR~aal~al~~r~~--~~~~~L~~~L~----d~d~~Vra~A~raLG~l~~~~a-~~~L~~ 185 (410)
T TIGR02270 117 QAEPWLEP-LLAA---SEPPGRAIGLAALGAHRH--DPGPALEAALT----HEDALVRAAALRALGELPRRLS-ESTLRL 185 (410)
T ss_pred HHHHHHHH-HhcC---CChHHHHHHHHHHHhhcc--ChHHHHHHHhc----CCCHHHHHHHHHHHHhhccccc-hHHHHH
Confidence 65544443 3332 244444555566665442 23344444443 4566666666777777666433 333334
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 360 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~ 360 (546)
+.. .+|...-..-+.+....|. ++|...+..+.. .++..+...+...+...|.+++...+..+.+.
T Consensus 186 al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d 251 (410)
T TIGR02270 186 YLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA 251 (410)
T ss_pred HHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCchhHHHHHHHHhcC
Confidence 433 2566666666777777777 666666555332 23333333334444444545565555555443
No 430
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.93 E-value=5.5e+02 Score=28.07 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=18.0
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 220 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 220 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.|+..+......++... .|++..++.+++++..
T Consensus 194 Egi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 194 EKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred cCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 35555555555554433 4666666666665543
No 431
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.59 E-value=1.8e+02 Score=24.45 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=31.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009025 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 346 (546)
Q Consensus 286 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 346 (546)
+.+.+.|++++. --..+++.+.+.+..-.|.++++++.+.+...+..|....++.+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455554332 233445555555555666666666666555555555444455444444
No 432
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.57 E-value=5.4e+02 Score=26.63 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=59.4
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHhh-hCCCCCCHHH
Q 009025 259 QPDSWTF-SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY--GKAQRTDDVVRALNRLP-ELGITPDDRF 334 (546)
Q Consensus 259 ~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~-~~~~~p~~~t 334 (546)
.++..|+ +.+++.+.+.|-..+|.+++..+... ..|+...|..+|+.= ..+-++.-+..+|+.|. ..| -|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4555554 45677777888888888888887764 345677777776532 12233667777787777 355 45555
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHH
Q 009025 335 CGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 335 ~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
|.-.+.--...|. +.+..++..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHH
Confidence 6555555556666 555555443
No 433
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=34.52 E-value=6.1e+02 Score=27.23 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=45.5
Q ss_pred CccCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009025 117 WRIDP-NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 195 (546)
Q Consensus 117 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 195 (546)
+..+. ..+..|+..+ +.=+.++-.++++++...- .....++.+++++...|-...+.-+.+.+....+ .+.....
T Consensus 341 ~~~~~~~~f~~Lv~~l-r~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~-~~~ea~~ 416 (618)
T PF01347_consen 341 VSKETLSKFSRLVRLL-RTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKL-TDDEAAQ 416 (618)
T ss_dssp --TTHHHHHHHHHHHH-TTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S--HHHHHH
T ss_pred cchhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 34443 2455555554 4446778888888876532 3567888999999999987766655555555333 3344444
Q ss_pred HHHHHHH
Q 009025 196 SLLRAYG 202 (546)
Q Consensus 196 ~ll~~~~ 202 (546)
.++....
T Consensus 417 ~l~~l~~ 423 (618)
T PF01347_consen 417 LLASLPF 423 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444333
No 434
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=34.37 E-value=1.3e+02 Score=21.73 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcC
Q 009025 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAG 135 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g 135 (546)
+.+.|..++..++... +.++..||++.+.+.+++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHcc
Confidence 6778888888887643 568999999988887764
No 435
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=33.90 E-value=88 Score=17.36 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009025 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLI 128 (546)
Q Consensus 100 g~~~~A~~l~~~~~~~g~~~~~~~~~~li 128 (546)
|+.+.|..+|+++..... -+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHH
Confidence 345566666666655422 2444444443
No 436
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.77 E-value=1.5e+02 Score=19.91 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=16.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 009025 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 158 (546)
Q Consensus 127 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 158 (546)
+..++.+.|++++|.+..+.+.+. .|+..-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 444566666666666666666654 455443
No 437
>PRK09857 putative transposase; Provisional
Probab=33.21 E-value=4.4e+02 Score=25.20 Aligned_cols=66 Identities=8% Similarity=0.090 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 331 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 331 (546)
+..++....+.|+.++..++++.+.+. .........++.+-+.+.|..++++++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444445556655556666555543 112223333455555555666667777777777766544
No 438
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.73 E-value=5.9e+02 Score=27.86 Aligned_cols=205 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhC---CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHhc
Q 009025 103 EMAFGLYDRARNE---KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----------ITYNNLLDTMGRA 169 (546)
Q Consensus 103 ~~A~~l~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~~~~~ll~~~~~~ 169 (546)
++-...+++|+.+ --.....+...++-.|-...+++..+++.+.++.. ||. +.|...++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---------GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---------~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
||-+.|+.+.-.|.+..-..-...|....+.| ...+..+.|.+.|++.-+. .|+...--.+...+...|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhh
Q ss_pred -CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 241 -YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 241 -~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
.++..+++-.--...+ ..+++.|.++.-..+|+-..-.|.. .-++++.+|++.
T Consensus 335 ~~Fens~Elq~IgmkLn-------------~LlgrKG~leklq~YWdV~~y~~as-------------VLAnd~~kaiqA 388 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLN-------------SLLGRKGALEKLQEYWDVATYFEAS-------------VLANDYQKAIQA 388 (1226)
T ss_pred hhccchHHHHHHHHHHH-------------HHhhccchHHHHHHHHhHHHhhhhh-------------hhccCHHHHHHH
Q ss_pred HHHhhhCCCCCCHHHHHHHHH
Q 009025 320 LNRLPELGITPDDRFCGCLLN 340 (546)
Q Consensus 320 ~~~m~~~~~~p~~~t~~~ll~ 340 (546)
-+.|.+ ++|...-..+.+.
T Consensus 389 ae~mfK--Lk~P~WYLkS~me 407 (1226)
T KOG4279|consen 389 AEMMFK--LKPPVWYLKSTME 407 (1226)
T ss_pred HHHHhc--cCCceehHHHHHH
No 439
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.09 E-value=7.8e+02 Score=27.73 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 009025 124 FSTLIKLYGTAGNFDGCLNVYEEMKA 149 (546)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~~m~~ 149 (546)
|..|+..|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 45666667777777777777766654
No 440
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.02 E-value=1.8e+02 Score=22.76 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR-AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 203 (546)
..++..|...|+.++|...++++... -.-..+.+..+-.++-+ ...-+....++..+.+.+..+....-..+-..+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~ 84 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLES 84 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q ss_pred cCCh--------HHHHHHHHHHHHcCCCc
Q 009025 204 ARYG--------EDTLSVYREMKEKGMQL 224 (546)
Q Consensus 204 ~g~~--------~~A~~~~~~m~~~g~~~ 224 (546)
..+. +-.-+++..+...|+-|
T Consensus 85 l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 85 LEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred hhhccccchHHHHHHHHHHHHHHHcCCcC
No 441
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.61 E-value=6.4e+02 Score=26.61 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=119.6
Q ss_pred CChHHHHHHHHHHHHcC-----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhC------CCC--
Q 009025 205 RYGEDTLSVYREMKEKG-----------MQLSVTLYNTLLAMCADVGYTDEAFEIFEDM-------KSS------ENC-- 258 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~------~~~-- 258 (546)
..+++|...|......- -+-.+.+.-.+..++-..|+.+.|-.++++. ..- |.|
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 34556666665554321 0112344555566777788776665555443 221 111
Q ss_pred ----CCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHhhhC---C
Q 009025 259 ----QPDSWTFSSM---ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG-KAQRTDDVVRALNRLPEL---G 327 (546)
Q Consensus 259 ----~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~---~ 327 (546)
.-|..-|.+| +..+.+.|.+..|+++-+-+......-|......+|+.|+ ++.++.-.+++++..... .
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 1122333333 4556788999999999988888766667888888888885 667788888888777532 2
Q ss_pred CCCCHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHH
Q 009025 328 ITPDDRFCGCLLNVMTQTPK----EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNC 403 (546)
Q Consensus 328 ~~p~~~t~~~ll~~~~~~g~----~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~ 403 (546)
.-||-.--.+|...|..... ..|...+.++.+..| .++.-|.+.+.-..+..-.-.+++..-...+...++..
T Consensus 412 ~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P---~vl~eLld~~~l~~da~~~~~k~~~~~a~~~e~pal~~ 488 (665)
T KOG2422|consen 412 QLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP---LVLSELLDELLLGDDALTKDLKFDGSSAENSELPALML 488 (665)
T ss_pred hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc---HHHHHHHHhccCCchhhhhhhcccccccccccchHHHH
Confidence 34554433344444443333 334445555555444 22333333222111111111112222223345668889
Q ss_pred HHHHHHhcCC----HHHHHHHHHHHHh
Q 009025 404 LIDLCVNLNL----LENACKLLELGLT 426 (546)
Q Consensus 404 li~~~~~~g~----~~~A~~~~~~m~~ 426 (546)
++..|+...+ ...++.+++....
T Consensus 489 lv~lY~~r~~~vWk~P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 489 LVKLYANRNEEVWKLPDVLSFLESAYH 515 (665)
T ss_pred HHHHHHhhhhHhhcChHHHHHHHHHHH
Confidence 9999987764 3456666666555
No 442
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=30.15 E-value=5.3e+02 Score=25.22 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 009025 231 TLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
-+.+.+++.++.+.+..+-+.+.
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~ 193 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALP 193 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHh
Confidence 34556666665555544444444
No 443
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.91 E-value=2.4e+02 Score=21.21 Aligned_cols=41 Identities=10% Similarity=0.166 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 217 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 217 (546)
++|+-....|+..|..+|..+++...-.=-.+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444444444444444444444333444444444443
No 444
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.64 E-value=91 Score=22.02 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNG 186 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 186 (546)
.++.++..+++..-.+.++..+.+..+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333333333333333444444443333
No 445
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.61 E-value=1.2e+02 Score=21.32 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
.++-++..+++-.-.++++..+.++.+.
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~ 37 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQR 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333334443333334444444443333
No 446
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.20 E-value=3.2e+02 Score=23.62 Aligned_cols=57 Identities=11% Similarity=0.139 Sum_probs=26.2
Q ss_pred hCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 114 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 114 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
..|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|---.|..+.+.|-
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 34544444332 3333333344445566666666655544444433333444444443
No 447
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=28.80 E-value=7.2e+02 Score=26.27 Aligned_cols=87 Identities=14% Similarity=0.287 Sum_probs=59.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChhH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT-AGNFDGCLNVYEEMKAI-GVK-PNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~~~g~~~~ 174 (546)
+.|..+.+.++|++..+. +...+..|...+..+.. .|+.+...+.|+..+.. |.. .....|...|.--...+++..
T Consensus 91 klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 678888888888888763 45667777776655543 46777778888877654 321 234466666766677777788
Q ss_pred HHHHHHHHHHC
Q 009025 175 VKTIYKEMTDN 185 (546)
Q Consensus 175 a~~~~~~m~~~ 185 (546)
...++++.++.
T Consensus 170 v~~iyeRilei 180 (577)
T KOG1258|consen 170 VANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhh
Confidence 88887777653
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.40 E-value=5e+02 Score=24.31 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=75.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYE----EMKAIGVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
+++++++|++++..-.. .+.+.|+...|-++-. -..+.+.+.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~Ga~---------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL---------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHHH---------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 45678888887765432 2334444443333322 2233455555555455555544443221
Q ss_pred -HHHHHHHHHH---HCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009025 174 -QVKTIYKEMT---DNGL--SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 247 (546)
Q Consensus 174 -~a~~~~~~m~---~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (546)
+-.++.+.++ +.|- .-|......+...|.+.|++.+|+..|-.-. .++...+..++..+...|...++
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~-- 140 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA-- 140 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch--
Confidence 1222333332 2222 2256778888899999999998887663321 22333333344333333333322
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 248 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
|...- ..+-.|...+++..|..+++...+.
T Consensus 141 -------------dlfi~-RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -------------DLFIA-RAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -------------HHHHH-HHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -------------hHHHH-HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22222 2334466678888888888776653
No 449
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.16 E-value=5.3e+02 Score=24.57 Aligned_cols=97 Identities=14% Similarity=0.246 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH--
Q 009025 190 NWNTYASLLRAYGRARYGEDTLSVYREMKE----KGMQLSVTLYNT-LLAMCADVGYTDEAFEIFEDMKSSENCQPDS-- 262 (546)
Q Consensus 190 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-- 262 (546)
-...+..+..-|++.++.+.+.+..++..+ .|.+.|+...-+ |.-.|....-.++-++..+.|.+.|. ..+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg-DWeRrN 192 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG-DWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC-CHHhhh
Confidence 356677788889999998888887766554 355555433222 22334444556777888888888774 3322
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 263 --WTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 263 --~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
.+|.-+.. ....++.+|..+|-...
T Consensus 193 RyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 193 RYKVYKGIFK--MMRRNFKEAAILLSDIL 219 (412)
T ss_pred hHHHHHHHHH--HHHHhhHHHHHHHHHHh
Confidence 12222221 22345666666665544
No 450
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.10 E-value=7.8e+02 Score=27.37 Aligned_cols=19 Identities=0% Similarity=0.146 Sum_probs=10.8
Q ss_pred CChhHHHHHHHHhhhCCCC
Q 009025 311 QRTDDVVRALNRLPELGIT 329 (546)
Q Consensus 311 g~~~~A~~~~~~m~~~~~~ 329 (546)
|+.++++.+++++...|+.
T Consensus 259 ~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 259 GDGPEILAVADEMALRSLS 277 (830)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 5556666666666555543
No 451
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.41 E-value=7.4e+02 Score=25.97 Aligned_cols=93 Identities=14% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHHHHh
Q 009025 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-------------FEPNLFVLTSLIQCYGK 309 (546)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~~~~~~li~~~~~ 309 (546)
++..+.+....+...+..+......++... .|++..|..+++++...| -..+......+++++..
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~ 258 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA 258 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 009025 310 AQRTDDVVRALNRLPELGITPDDRFCGCL 338 (546)
Q Consensus 310 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 338 (546)
|+.+.++.++++|.+.|..|.......+
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 259 -KAGDRLLGCVTRLVEQGVDFSNALADLL 286 (509)
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHHHHHHH
No 452
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.94 E-value=2.8e+02 Score=23.99 Aligned_cols=58 Identities=7% Similarity=-0.071 Sum_probs=31.1
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH
Q 009025 289 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347 (546)
Q Consensus 289 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 347 (546)
...|++.+.. -..++..+...++.-.|.++++.+.+.+..++..|....|..+...|-
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3445554332 223444444445555666677777666655566555555555555543
No 453
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=26.64 E-value=3.3e+02 Score=21.61 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
.||...|-+|.. .+.|.-+++...+.++.
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 445544444433 24455555555554444
No 454
>PRK09857 putative transposase; Provisional
Probab=26.63 E-value=5.7e+02 Score=24.43 Aligned_cols=62 Identities=8% Similarity=0.145 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009025 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223 (546)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 223 (546)
.++.-..+.++.++..++++.+.+. .+......-++..-+.+.|..++++++..+|...|+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3443334444444444555444443 1112222223333334444444444444444444443
No 455
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.62 E-value=4.8e+02 Score=23.57 Aligned_cols=24 Identities=4% Similarity=-0.032 Sum_probs=13.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 009025 197 LLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
+...+.+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344455556666666666666554
No 456
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.45 E-value=1.3e+02 Score=30.50 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=26.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHH
Q 009025 130 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN-LLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 130 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
-+.+.+.++.|+.++.+.++. .||...|-. -..++.+.+++..|+.=+.+.++
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 334445566666666655554 344433322 22455555555555544444444
No 457
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.39 E-value=5.3e+02 Score=23.93 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHH
Q 009025 135 GNFDGCLNVYEEMKAIGVKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA-SLLRAYGRARYGEDTLS 212 (546)
Q Consensus 135 g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~~ 212 (546)
.+++.|+..|.+.+.. .|+.. -|+.=+.++.+..+++.+..=-.+.++ +.||..--. .+..+......+++|+.
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 4555666655444433 45553 334444455555555555444333333 334433222 22333444555666666
Q ss_pred HHHHH
Q 009025 213 VYREM 217 (546)
Q Consensus 213 ~~~~m 217 (546)
++.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 65554
No 458
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.32 E-value=6.6e+02 Score=25.08 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=40.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVT--LYNTLLAMCA--DVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 255 (546)
.+.+.+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.|+.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445789999999999999987 555444 4455555554 456788999999987764
No 459
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=26.17 E-value=66 Score=32.44 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.6
Q ss_pred cCCCCCCCCCCcceEEEeH
Q 009025 505 LNAPFHDSPDKVGWFLTTE 523 (546)
Q Consensus 505 l~~~f~~~~~~~G~~~~~~ 523 (546)
|+.||...+.|.|.+++.+
T Consensus 359 lDiPf~~~~~n~g~v~~~r 377 (428)
T cd00245 359 LDIPFCPSIYNAGKMRPAR 377 (428)
T ss_pred CcCCCCCChhhcCCceeeE
Confidence 6689988888999888765
No 460
>PRK12798 chemotaxis protein; Reviewed
Probab=25.90 E-value=7e+02 Score=25.18 Aligned_cols=197 Identities=13% Similarity=0.085 Sum_probs=96.4
Q ss_pred ccccCCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCC
Q 009025 77 YIWVNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKP 154 (546)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p 154 (546)
..|.+|.|-++... |...-|+.+-...++.. +..++. =+.|+.+.. -.|+-.+|.+.+..+.....++
T Consensus 76 ~vw~dprNv~Aa~i----y~lSGGnP~vlr~L~~~----d~~~~~--d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~ 145 (421)
T PRK12798 76 EVWDDPRNVDAALI----YLLSGGNPATLRKLLAR----DKLGNF--DQRLADGALAYLSGRGREARKLLAGVAPEYLPA 145 (421)
T ss_pred HHhCCccchhHHHh----hHhcCCCHHHHHHHHHc----CCCChh--hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCc
Confidence 45666666555333 33345565544443332 222111 122332222 2467777777777776655566
Q ss_pred CHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH--
Q 009025 155 NMITYNNLLDT-MGRAKRPWQVKTIYKEMTDNGLSPNW----NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT-- 227 (546)
Q Consensus 155 ~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-- 227 (546)
...-|-.|+.+ .....+...|+++|+...-. .|-+ ....--|-.....|+.+++..+-..-..+ +.-+++
T Consensus 146 ~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR-F~~S~YA~ 222 (421)
T PRK12798 146 ELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRR-FRHSPYAS 222 (421)
T ss_pred hhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH-hccCchHH
Confidence 66666666665 34445677777777776542 2322 22233344456667776666554443332 111222
Q ss_pred -HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 228 -LYNTLLAMCADVG---YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 228 -~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+..+...+.+.+ ..+.-..++..|.. .--...|..+.+.-.-.|+.+.|...-++...
T Consensus 223 ~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~----~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~ 285 (421)
T PRK12798 223 QFAQRFVDLVVRLDDEIRDARLVEILSFMDP----ERQRELYLRIARAALIDGKTELARFASERALK 285 (421)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHhcCc----hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1222222333322 22333333333322 11234666666666667777766666666554
No 461
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.78 E-value=2.9e+02 Score=20.79 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=23.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009025 142 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 183 (546)
Q Consensus 142 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 183 (546)
++|+.....|+..|...|..+++.+.-.=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555666666666665555544444555555555554
No 462
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=25.77 E-value=3.5e+02 Score=28.84 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..|..-+..+...++.. ....+.+...-. -.+.....-++..|.+.|..+.|.++.+.+-.+-. ...-|..-+.-
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p-~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVP-LDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSW 447 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHH
Confidence 34555555554444332 555555555432 34556677888899999999999988887765422 23456667777
Q ss_pred HHhcCChhHHHHHHHHhhhC
Q 009025 307 YGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~ 326 (546)
+.++|+.+.+-.+-+.+.+.
T Consensus 448 ~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HH------------------
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 88888888877777666643
No 463
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.34 E-value=7.1e+02 Score=25.11 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--cC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLE--AG-----FEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~--~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
.|++..+-.||+..|+++++.+.- .+ ..-.+.+|-.+.-+|...+++.+|.++|...
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555543321 00 0112233444455555556666666665544
No 464
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=25.21 E-value=6.5e+02 Score=24.60 Aligned_cols=113 Identities=13% Similarity=0.144 Sum_probs=73.9
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc----CCH---HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHH
Q 009025 313 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQ----TPK---EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEA 385 (546)
Q Consensus 313 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~---~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A 385 (546)
.+++..++++....+. |.++.....|.++-- .++ .....+|+.+....|+....+|--+..-...| .+.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~G--p~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREG--PAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhh--HHhH
Confidence 4677777877776654 777777766666542 122 55566788887777765544432222212224 3667
Q ss_pred HHHHHhcccCc----cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 386 TELFNSISKDV----KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 386 ~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+...+.+..++ ....+..=.+.+.+.|+.++|...|++.+..-
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 77777766543 23466777888999999999999999987653
No 465
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=24.95 E-value=3.1e+02 Score=20.74 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=6.2
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 009025 234 AMCADVGYTDEAFEIFED 251 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~ 251 (546)
..+...|++++|++.+-+
T Consensus 30 ~~~~~~g~~e~Al~~Ll~ 47 (90)
T PF14561_consen 30 DALLAAGDYEEALDQLLE 47 (90)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 333333333333333333
No 466
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.69 E-value=5.3e+02 Score=25.29 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 343 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 343 (546)
|-.++......|.+++++.+|++.+..|..|-...-..+++.+.
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555555444444444
No 467
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.63 E-value=3e+02 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 402 NCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 402 ~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
-.|++.|.+.|++++|+++.....+.
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L 135 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRL 135 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHH
Confidence 47888999999999998888776543
No 468
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.36 E-value=6.6e+02 Score=24.39 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH--HHHHHHHhcCCHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN--TLLAMCADVGYTDEAFE 247 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~ 247 (546)
.-..+|+++|++.++.| ..+|+.- +.+...|.. .+.+.+++ .++.+|- .|.-+-.+.|+..+|.+
T Consensus 230 ~Ti~~AE~l~k~ALka~----e~~yr~s-qq~qh~~~~------~da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAG----ETIYRQS-QQCQHQSPQ------HEAQLRRD--TNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhHHHHHHHHHHHHHHH----HHHHhhH-HHHhhhccc------hhhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 34566778887777653 2233311 111111211 22233332 2333432 33334456788888888
Q ss_pred HHHHHHhCCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 248 IFEDMKSSENCQPDSW---TFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
.|+++.+.- |-.. ....||.++....-+.+...++.+..+-
T Consensus 297 ~~RDL~ke~---pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 297 IMRDLMKEF---PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHhhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888877642 3222 2346777777776666666666655543
No 469
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.26 E-value=2.5e+02 Score=19.51 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=6.5
Q ss_pred HcCChHHHHHHHHHH
Q 009025 133 TAGNFDGCLNVYEEM 147 (546)
Q Consensus 133 ~~g~~~~A~~~~~~m 147 (546)
..|++=+|-++++.+
T Consensus 11 n~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 11 NAGDFFEAHEVLEEL 25 (62)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHH
Confidence 344444444444444
No 470
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=24.17 E-value=1.5e+02 Score=18.02 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=17.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHH
Q 009025 401 CNCLIDLCVNLNLLENACKLLE 422 (546)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~ 422 (546)
|-.+.-.+...|++++|+++|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4466777889999999999954
No 471
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=24.14 E-value=2.9e+02 Score=20.07 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009025 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275 (546)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 275 (546)
+.+.|..++..+.... +.....||++.+.+.++
T Consensus 12 DtEmA~~mL~DLr~de--kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE--KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh--hcChHHHHHHHHHHHHc
Confidence 3455666666665544 45566666666655443
No 472
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.97 E-value=8.6e+02 Score=25.55 Aligned_cols=59 Identities=10% Similarity=0.078 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI---TYNNLLDTMGRAKRPWQVKTIYKEMTDN 185 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 185 (546)
..++.-|.+.+++++|+.++..|.=.. . ... ..+.+.+.+.+..--++.+..++.++..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~-~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNT-M-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccc-c-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 356778999999999999998874211 1 122 3334445555555445555556655544
No 473
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.96 E-value=3.6e+02 Score=27.16 Aligned_cols=27 Identities=7% Similarity=0.008 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHhCC-----CccCHHHHHHH
Q 009025 101 NVEMAFGLYDRARNEK-----WRIDPNAFSTL 127 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g-----~~~~~~~~~~l 127 (546)
.++.=..+|.-++... .-|+...|..+
T Consensus 6 Sw~nYc~LF~~iL~s~~p~~l~LPn~WlwDii 37 (404)
T PF10255_consen 6 SWDNYCELFNYILNSDGPVNLELPNQWLWDII 37 (404)
T ss_pred HHHHHHHHHHHHhCCCCCcccCCCcHHHHHHH
Confidence 3445556676666421 23566666543
No 474
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.94 E-value=4.3e+02 Score=22.07 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
..-.|.++++.+.+.+...+..|..--|..+...|-
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 344555566665555544444444444444444443
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.86 E-value=1.9e+02 Score=22.86 Aligned_cols=42 Identities=10% Similarity=-0.027 Sum_probs=20.3
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH
Q 009025 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 347 (546)
.+...+..-.|.++++++.+.+...+..|....|+.+...|-
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 333333444455555555554444455555555555555554
No 476
>PRK10941 hypothetical protein; Provisional
Probab=23.84 E-value=6.2e+02 Score=23.87 Aligned_cols=60 Identities=7% Similarity=-0.052 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 185 (546)
+.+-.+|.+.++++.|+.+.+.+.... +-+..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345566777777777777777777653 234445555666677777777777777666654
No 477
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.81 E-value=3.6e+02 Score=21.09 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCC
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK--RPWQVKTIYKEMTDNGL 187 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~ 187 (546)
..++.-|...+++++|..-+.++.... -.......++..+...+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 346667778888888888888775332 12233334444444442 23445566666665543
No 478
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.71 E-value=4.3e+02 Score=22.04 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=27.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 147 MKAIGVKPNMITYNNLLDTMGRA-KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 147 m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
+.+.|++.+.. -..++..+... +..-.|.++++.+.+.+...+..|..--|+.+...|
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445544332 22334444433 345566666666666554444444433444444444
No 479
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.60 E-value=3.1e+02 Score=21.82 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=12.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
+-+.++.-.++|+++++-|.+.|
T Consensus 69 D~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 69 DYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33444555555555555555555
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.58 E-value=7.1e+02 Score=24.44 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 308 (546)
-|..+.+.....|.+++++.+|++.+..|..|-...-..+++.+-
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 466777777778888888888888888777776666565555543
No 481
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.22 E-value=7.4e+02 Score=24.52 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHH-Hc-----CCCcCHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----WNTYASLLRAYGRARYGEDTLSVYREMK-EK-----GMQLSVT 227 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~-----g~~~~~~ 227 (546)
+++.+-.++.+.++.....++..+.+.. ..+. .....-++..+.+.+++.-++..++.-. +. ...|...
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f 182 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF 182 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH
Confidence 4555666666666666555554444332 1111 1223345556666666655554443211 11 1121111
Q ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHh
Q 009025 228 LYNTLLA--MCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 228 ~~~~li~--~~~~~g~~~~A~~~~~~m~~ 254 (546)
..-.+=. .|....+++.|..+|+...-
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 1111101 13345688888888888774
No 482
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=23.20 E-value=1.8e+02 Score=29.63 Aligned_cols=106 Identities=11% Similarity=-0.002 Sum_probs=66.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
.+-+.+.++++.|..++.+.++. .|+-. -|..-..++.+.+++..|+.=+...++.. +-....|..=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 44556778888888888888876 44433 33333477788888888887777776643 222233333334444555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009025 277 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309 (546)
Q Consensus 277 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 309 (546)
.+.+|...|+.... +.|+..-...++.-|-+
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 66666666666554 56777777777765543
No 483
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.19 E-value=95 Score=31.42 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 219 (546)
.+++-.++++.+.+.|- +| ....-|+.|.+.+++++|...+++-.+
T Consensus 69 ~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 34555555555555541 12 233445666666666666665555444
No 484
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.15 E-value=8.2e+02 Score=25.83 Aligned_cols=27 Identities=30% Similarity=0.153 Sum_probs=16.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 401 CNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
|-.++.++...++.+.|.++++++.+.
T Consensus 211 yf~v~k~vv~LnDa~~a~~L~~kL~~e 237 (926)
T COG5116 211 YFYVIKAVVYLNDAEKAKALIEKLVKE 237 (926)
T ss_pred EEEEeEEEEEeccHHHHHHHHHHHHhh
Confidence 334556666666666666666666544
No 485
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.99 E-value=2.3e+02 Score=25.53 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHc--------CCCcCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 206 YGEDTLSVYREMKEK--------GMQLSVTLYNTLLAMCADVGY---------TDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
..+.|..++..|--. |.. ...-|..+..+|++.|- .+.-.++++...+.|.-+.=...|.++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~-~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssi 214 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLK-HLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSI 214 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcc-cHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceec
Confidence 356777777766432 222 45667788888888773 344445555555555422333455555
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m 288 (546)
|+--.-.-+.++..++|..+
T Consensus 215 IDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 215 IDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred cccccCCCCHHHHHHHHHHh
Confidence 55444444555555555444
No 486
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=22.81 E-value=4.3e+02 Score=21.62 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS-SMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~ 287 (546)
.+-.++..++.-.|..++|.++++...= -++-...| .++..|.++.+-++..++-++
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkW----G~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKW----GHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445555566666666666666655431 22222222 456666666655555554443
No 487
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.57 E-value=1.1e+03 Score=26.29 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHh-CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHH
Q 009025 102 VEMAFGLYDRARN-EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-------------KPNMITYNNLLDTMG 167 (546)
Q Consensus 102 ~~~A~~l~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~~~~~ll~~~~ 167 (546)
.++..+.++.+.. .|+..+......+... ..|+..+|+.++++....+- ..|......++.++.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA 257 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455555655543 5666666655555433 36888888888777654321 123333444444433
Q ss_pred hcCChhHHHHHHHHHHHCCCCC
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSP 189 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p 189 (546)
.++...++.+++++...|+..
T Consensus 258 -~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 258 -AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred -cCCHHHHHHHHHHHHHhCCCH
Confidence 367777777777777766543
No 488
>COG5210 GTPase-activating protein [General function prediction only]
Probab=22.42 E-value=7.8e+02 Score=25.66 Aligned_cols=117 Identities=9% Similarity=0.052 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMF 285 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 285 (546)
.-+++..+.+.|+.....++..++..+.+.-..+.+.++++.+.-.|. .-....+.+++..... ...-..-..++
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~-~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 439 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS-SMLFQLALAILKLLRDKLLKLDSDELLDLLL 439 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhhhhhhccCchhHHHHHH
Confidence 346888899999999999999999999999999999999999988774 3333344333332211 12222222222
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 286 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 286 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
...... +....+ .-..-...+...+.......+.+.++.|+.
T Consensus 440 ~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~i~p~~ 481 (496)
T COG5210 440 KQLFLH---SGKEAW--SSILKFRHGTDRDILLFIEDLLKKDITPTR 481 (496)
T ss_pred Hhhhhh---hhhhhh--hhhHHhhhhhhhhHHHHHHhhhhcccCchh
Confidence 222211 111111 222223344455556666666677788876
No 489
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.35 E-value=7.3e+02 Score=24.14 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009025 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 190 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 239 (546)
....|..++.+|+.-.-.++|+..+++..+.|+. +...|-.=++.+.+.
T Consensus 298 ~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsRe 346 (365)
T KOG2391|consen 298 TAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSRE 346 (365)
T ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHH
Confidence 3445666677777666666666677776666643 455554444444443
No 490
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=22.12 E-value=1.7e+02 Score=21.16 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=18.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 168 (546)
.|+.+.+.+++++..+.|..|.......+..++.+
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35556666666666655555555554445444433
No 491
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.07 E-value=3.6e+02 Score=21.48 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=10.5
Q ss_pred HHhcCChhHHHHHHHHHHHCC
Q 009025 166 MGRAKRPWQVKTIYKEMTDNG 186 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~g 186 (546)
+-++...++|+++.+.|.+.|
T Consensus 71 lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 71 LRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 334444555555555555544
No 492
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.00 E-value=2.3e+02 Score=22.32 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
|.++++.+.+.+...+..|....+..+...|
T Consensus 19 a~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 19 AEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3344444433333333333333333333333
No 493
>PRK04946 hypothetical protein; Provisional
Probab=21.97 E-value=4.7e+02 Score=22.97 Aligned_cols=62 Identities=24% Similarity=0.225 Sum_probs=42.6
Q ss_pred eecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccchhHHHHHHHHhhhcC--CCCCCCCC
Q 009025 442 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELN--APFHDSPD 514 (546)
Q Consensus 442 ~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~--~~f~~~~~ 514 (546)
.++++++....|..++..++..-. ..| + .++.|+.|.|. .-|+..+...|.+.. .-|+.++.
T Consensus 97 ~LDLhG~~~eeA~~~L~~fl~~a~---~~g--~-r~v~IIHGkG~-----gvLk~~V~~wL~q~~~V~af~~A~~ 160 (181)
T PRK04946 97 FLDLHGLTQLQAKQELGALIAACR---KEH--V-FCACVMHGHGK-----HILKQQTPLWLAQHPDVMAFHQAPK 160 (181)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHH---HcC--C-CEEEEEcCCCH-----hHHHHHHHHHHcCCchhheeeccCc
Confidence 579999999999999987765533 344 2 25678877765 358888888886643 24555554
No 494
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=21.52 E-value=4.1e+02 Score=21.73 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhcchHHHHHHHHHhcccCccch-hhHHHHHHHHhcCCHHHHHHHHHH
Q 009025 367 VVKLLLEEQDIEGDFKKEATELFNSISKDVKKA-YCNCLIDLCVNLNLLENACKLLEL 423 (546)
Q Consensus 367 ~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 423 (546)
.+.+++.++.-.| ..++|.++++..+-.+.-. .=.-+++.|.++.+-++..++-++
T Consensus 68 cvEAlAAaLyI~G-~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 68 CVEALAAALYILG-FKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4466666666777 5689999988887655433 334688999999888777666554
No 495
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=21.50 E-value=9.3e+02 Score=25.03 Aligned_cols=188 Identities=13% Similarity=0.167 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 009025 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR------PWQVKTIYKEMTDN-GLSP-NWNTYASLLRAYGRARYGEDT 210 (546)
Q Consensus 139 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~~~~~g~~~~A 210 (546)
....+|++.... -|+...|+..|..|...-. ......+++...+. +..+ ...-|..+.-++.......++
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 345666666553 4566667667766654322 23334444444433 2222 234555555555554443222
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CCHHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-HHHH-HH-HH
Q 009025 211 LSVYREMKEKGMQLSVTLYNTLLAMCADV-GYTDE-AFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEA-EA-MF 285 (546)
Q Consensus 211 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~-A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A-~~-~~ 285 (546)
-..+...++.-|...|-.-+....+. .++.- -.++|......- +.+-...|++.. .|+ ++.. .. ++
T Consensus 378 ---a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~-~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 378 ---AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV-CSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred ---HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh-cchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 22222222333555555544444322 12211 112222222211 133333444433 111 1111 11 11
Q ss_pred HHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009025 286 NEMLEAGFEPNLFVL-TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339 (546)
Q Consensus 286 ~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 339 (546)
...... ..++..++ +.+++-+.+.|-.++|..+|..+... ..|....|..++
T Consensus 449 ~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~mi 501 (568)
T KOG2396|consen 449 SALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMI 501 (568)
T ss_pred HHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 111211 22444443 45666667777777777777777653 233444444443
No 496
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.29 E-value=9.7e+02 Score=25.17 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 009025 231 TLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m 252 (546)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3444555555555555555554
No 497
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=21.10 E-value=6.9e+02 Score=23.39 Aligned_cols=25 Identities=4% Similarity=0.093 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMKA 149 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~~ 149 (546)
+.++..+.+.|....|..+.+.+..
T Consensus 86 ~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 86 HHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 4455566666666666666666543
No 498
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.07 E-value=9.5e+02 Score=24.97 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009025 261 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295 (546)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 295 (546)
+...+..++++....+....|..++++|.+.|..|
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 44444444444444444455566666666555443
No 499
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=21.03 E-value=1.4e+02 Score=21.87 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHH
Q 009025 141 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN--TYASLLRAYGRARYGEDTLSVYREMK 218 (546)
Q Consensus 141 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~ 218 (546)
.++++.+.+.+...+. -+..+...+..|+ .++++.+.+.|..++.. .-.+.+...+..|+.+ +++.+.
T Consensus 10 ~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll 79 (89)
T PF12796_consen 10 LEILKFLLEKGADINL--GNTALHYAAENGN----LEIVKLLLENGADINSQDKNGNTALHYAAENGNLE----IVKLLL 79 (89)
T ss_dssp HHHHHHHHHTTSTTTS--SSBHHHHHHHTTT----HHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH----HHHHHH
T ss_pred HHHHHHHHHCcCCCCC--CCCHHHHHHHcCC----HHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH----HHHHHH
Q ss_pred HcCCCcC
Q 009025 219 EKGMQLS 225 (546)
Q Consensus 219 ~~g~~~~ 225 (546)
+.|..++
T Consensus 80 ~~g~~~~ 86 (89)
T PF12796_consen 80 EHGADVN 86 (89)
T ss_dssp HTTT-TT
T ss_pred HcCCCCC
No 500
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.00 E-value=9.7e+02 Score=25.09 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHhc
Q 009025 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-------------VKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 103 ~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~~~~~ll~~~~~~ 169 (546)
+-...+-+.+.+.|+..+......++... .|+...|+.+++++...| -.++......++.++..
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~- 258 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA- 258 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 201 (546)
++.+.+..++++|...|..+.......+-...
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~ 290 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDFSNALADLLSLLH 290 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Done!