Query 009025
Match_columns 546
No_of_seqs 701 out of 3059
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 17:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8.9E-32 3.1E-36 276.0 25.9 207 103-310 7-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.7E-31 5.7E-36 274.1 25.7 207 138-345 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.3E-28 4.5E-33 261.3 34.4 328 91-427 89-504 (597)
4 2xpi_A Anaphase-promoting comp 100.0 2.9E-28 9.8E-33 258.7 33.7 361 91-465 122-578 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-23 5.9E-28 209.6 40.1 340 81-432 29-371 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.9E-23 6.6E-28 209.2 38.0 350 96-461 9-363 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2E-21 6.9E-26 198.3 35.2 305 91-406 31-371 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.7E-20 6E-25 191.4 35.9 313 108-432 14-361 (450)
9 2gw1_A Mitochondrial precursor 99.9 5.7E-20 2E-24 190.7 32.0 359 92-465 12-477 (514)
10 2gw1_A Mitochondrial precursor 99.8 5.3E-19 1.8E-23 183.4 30.7 331 90-428 43-479 (514)
11 3ieg_A DNAJ homolog subfamily 99.8 1.1E-17 3.8E-22 164.6 36.8 300 123-432 5-338 (359)
12 3ieg_A DNAJ homolog subfamily 99.8 1.6E-17 5.4E-22 163.4 36.2 308 92-410 9-352 (359)
13 3fp2_A TPR repeat-containing p 99.8 2.4E-18 8.1E-23 179.7 28.3 88 91-180 30-117 (537)
14 3hym_B Cell division cycle pro 99.8 1.2E-17 4E-22 162.5 30.0 287 120-413 21-320 (330)
15 3hym_B Cell division cycle pro 99.8 3E-17 1E-21 159.6 29.4 280 93-379 29-319 (330)
16 3spa_A Mtrpol, DNA-directed RN 99.8 1.3E-19 4.5E-24 191.0 8.4 170 118-287 124-306 (1134)
17 1b89_A Protein (clathrin heavy 99.8 1.7E-18 5.7E-23 169.9 14.3 282 98-421 15-305 (449)
18 1fch_A Peroxisomal targeting s 99.8 4.4E-17 1.5E-21 161.3 24.7 287 99-424 38-356 (368)
19 1fch_A Peroxisomal targeting s 99.8 5.3E-17 1.8E-21 160.7 23.8 307 132-465 36-358 (368)
20 4eqf_A PEX5-related protein; a 99.8 7E-17 2.4E-21 159.9 24.6 229 90-325 69-309 (365)
21 3spa_A Mtrpol, DNA-directed RN 99.8 1.5E-18 5.2E-23 183.0 11.4 151 190-346 126-286 (1134)
22 4eqf_A PEX5-related protein; a 99.8 1.2E-16 4.1E-21 158.2 24.4 278 120-423 64-352 (365)
23 3fp2_A TPR repeat-containing p 99.8 8E-16 2.8E-20 160.4 31.4 301 120-428 24-408 (537)
24 3cv0_A Peroxisome targeting si 99.7 6.9E-16 2.4E-20 149.7 26.1 258 90-354 25-309 (327)
25 3mkr_A Coatomer subunit epsilo 99.7 2.1E-15 7E-20 144.2 28.0 257 98-369 11-273 (291)
26 3cv0_A Peroxisome targeting si 99.7 1.8E-15 6.1E-20 146.8 27.4 278 120-425 20-313 (327)
27 2xm6_A Protein corresponding t 99.7 2E-13 6.7E-18 140.9 43.5 306 99-428 56-397 (490)
28 2xm6_A Protein corresponding t 99.7 2.9E-13 9.8E-18 139.6 43.4 306 99-429 92-434 (490)
29 3mkr_A Coatomer subunit epsilo 99.7 3.7E-15 1.3E-19 142.4 25.7 273 128-419 6-286 (291)
30 3uq3_A Heat shock protein STI1 99.7 2.6E-14 8.9E-19 133.4 26.0 225 122-361 6-237 (258)
31 2ooe_A Cleavage stimulation fa 99.6 7.3E-13 2.5E-17 138.0 36.7 324 97-428 23-455 (530)
32 3uq3_A Heat shock protein STI1 99.6 7.6E-14 2.6E-18 130.2 24.0 218 93-325 12-235 (258)
33 1b89_A Protein (clathrin heavy 99.6 7.6E-15 2.6E-19 144.1 15.8 259 91-387 37-303 (449)
34 3u4t_A TPR repeat-containing p 99.6 2.1E-13 7.3E-18 128.5 25.3 248 122-374 4-264 (272)
35 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.5E-18 125.6 22.9 198 119-323 3-211 (217)
36 4g1t_A Interferon-induced prot 99.6 5.7E-13 1.9E-17 136.5 30.3 326 96-428 61-460 (472)
37 2ho1_A Type 4 fimbrial biogene 99.6 4.2E-13 1.4E-17 125.0 26.4 198 123-325 39-237 (252)
38 2h6f_A Protein farnesyltransfe 99.6 5E-13 1.7E-17 132.2 28.0 245 120-373 96-361 (382)
39 2vq2_A PILW, putative fimbrial 99.6 7.8E-13 2.7E-17 120.5 27.3 210 120-335 7-218 (225)
40 1ouv_A Conserved hypothetical 99.6 2.7E-12 9.3E-17 121.2 31.1 224 120-362 5-253 (273)
41 2ho1_A Type 4 fimbrial biogene 99.6 3.8E-13 1.3E-17 125.3 24.2 197 91-292 42-239 (252)
42 2pl2_A Hypothetical conserved 99.6 1.8E-13 6.1E-18 124.7 21.2 195 154-356 3-210 (217)
43 1ouv_A Conserved hypothetical 99.6 7.7E-12 2.6E-16 118.1 33.3 226 82-327 3-252 (273)
44 2h6f_A Protein farnesyltransfe 99.6 9.3E-13 3.2E-17 130.2 27.7 247 156-410 97-365 (382)
45 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.7E-13 5.7E-18 129.3 20.1 223 97-326 16-244 (275)
46 2ooe_A Cleavage stimulation fa 99.6 1E-11 3.5E-16 129.3 35.5 330 91-428 51-493 (530)
47 2q7f_A YRRB protein; TPR, prot 99.6 4.3E-13 1.5E-17 124.0 22.4 188 97-290 34-221 (243)
48 2vq2_A PILW, putative fimbrial 99.6 2.3E-12 8E-17 117.3 26.9 211 155-368 7-219 (225)
49 2q7f_A YRRB protein; TPR, prot 99.5 6.7E-13 2.3E-17 122.7 21.6 203 118-326 20-222 (243)
50 3u4t_A TPR repeat-containing p 99.5 6.4E-12 2.2E-16 118.3 28.3 233 194-432 6-253 (272)
51 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.3E-13 1.1E-17 127.3 19.1 186 133-325 17-205 (275)
52 4g1t_A Interferon-induced prot 99.5 3.4E-11 1.2E-15 123.2 35.2 321 101-428 30-402 (472)
53 1xi4_A Clathrin heavy chain; a 99.5 3E-11 1E-15 132.0 32.9 285 96-419 1059-1376(1630)
54 4a1s_A PINS, partner of inscut 99.5 1.3E-12 4.4E-17 131.2 18.1 279 120-427 47-372 (411)
55 3sf4_A G-protein-signaling mod 99.5 6.1E-13 2.1E-17 133.0 15.5 265 91-356 14-332 (406)
56 4abn_A Tetratricopeptide repea 99.5 4.4E-12 1.5E-16 129.9 22.1 210 137-353 84-314 (474)
57 2ond_A Cleavage stimulation fa 99.4 5.9E-11 2E-15 114.3 27.7 218 103-326 33-270 (308)
58 3ulq_A Response regulator aspa 99.4 2.2E-11 7.6E-16 121.1 25.1 230 199-428 111-369 (383)
59 2ond_A Cleavage stimulation fa 99.4 1.3E-10 4.5E-15 111.8 29.3 222 138-364 33-274 (308)
60 3vtx_A MAMA; tetratricopeptide 99.4 2.8E-11 9.6E-16 106.7 22.5 166 120-290 4-169 (184)
61 4a1s_A PINS, partner of inscut 99.4 1.2E-12 4.1E-17 131.4 15.3 273 91-364 53-376 (411)
62 3vtx_A MAMA; tetratricopeptide 99.4 3.8E-11 1.3E-15 105.9 23.0 166 155-325 4-169 (184)
63 1xi4_A Clathrin heavy chain; a 99.4 2.8E-10 9.7E-15 124.5 34.0 292 98-422 1088-1440(1630)
64 3sf4_A G-protein-signaling mod 99.4 5.4E-12 1.8E-16 126.1 18.1 281 118-427 6-336 (406)
65 3ro2_A PINS homolog, G-protein 99.4 5.6E-12 1.9E-16 122.1 17.1 278 121-427 5-332 (338)
66 3ro2_A PINS homolog, G-protein 99.4 3.9E-12 1.3E-16 123.2 15.1 267 93-360 12-332 (338)
67 3e4b_A ALGK; tetratricopeptide 99.4 4.7E-11 1.6E-15 121.4 23.5 313 98-429 15-389 (452)
68 3nf1_A KLC 1, kinesin light ch 99.4 1.3E-11 4.6E-16 118.3 18.2 234 91-325 32-306 (311)
69 3e4b_A ALGK; tetratricopeptide 99.4 1.5E-11 5E-16 125.2 18.9 280 126-429 8-353 (452)
70 4abn_A Tetratricopeptide repea 99.4 5.8E-11 2E-15 121.5 23.2 212 172-392 84-318 (474)
71 3q15_A PSP28, response regulat 99.3 2.3E-10 7.9E-15 113.5 25.4 227 199-426 109-364 (378)
72 3nf1_A KLC 1, kinesin light ch 99.3 3.2E-11 1.1E-15 115.6 16.7 197 92-290 75-306 (311)
73 3ulq_A Response regulator aspa 99.3 2.3E-10 7.7E-15 113.8 22.5 295 94-392 20-365 (383)
74 3as5_A MAMA; tetratricopeptide 99.3 3.5E-10 1.2E-14 99.1 20.9 164 122-290 9-172 (186)
75 1hz4_A MALT regulatory protein 99.3 3.2E-09 1.1E-13 104.9 28.8 274 126-427 19-322 (373)
76 3as5_A MAMA; tetratricopeptide 99.3 5.1E-10 1.8E-14 98.0 20.6 164 157-325 9-172 (186)
77 4gyw_A UDP-N-acetylglucosamine 99.3 3.5E-10 1.2E-14 120.7 21.6 166 120-290 8-173 (723)
78 4gyw_A UDP-N-acetylglucosamine 99.2 5.1E-10 1.8E-14 119.4 21.7 166 155-325 8-173 (723)
79 4i17_A Hypothetical protein; T 99.2 2.8E-09 9.7E-14 97.3 23.2 202 119-334 5-215 (228)
80 1hz4_A MALT regulatory protein 99.2 2.9E-09 1E-13 105.2 24.0 265 95-359 23-321 (373)
81 4i17_A Hypothetical protein; T 99.2 2.7E-09 9.4E-14 97.4 21.7 208 154-374 5-223 (228)
82 3edt_B KLC 2, kinesin light ch 99.2 1.8E-10 6.2E-15 108.5 14.2 224 101-325 23-280 (283)
83 3edt_B KLC 2, kinesin light ch 99.2 2.2E-10 7.4E-15 107.9 14.7 198 91-290 48-280 (283)
84 3q15_A PSP28, response regulat 99.1 2.5E-09 8.5E-14 106.0 19.3 224 97-324 112-363 (378)
85 1qqe_A Vesicular transport pro 99.1 3.1E-09 1.1E-13 101.3 18.6 160 130-289 46-226 (292)
86 1qqe_A Vesicular transport pro 99.1 2.8E-09 9.4E-14 101.6 18.0 212 136-364 32-273 (292)
87 2fo7_A Synthetic consensus TPR 99.1 1.3E-08 4.5E-13 83.6 18.0 128 194-325 4-131 (136)
88 2pzi_A Probable serine/threoni 99.0 4.3E-09 1.5E-13 112.6 17.2 170 98-274 403-580 (681)
89 2fo7_A Synthetic consensus TPR 99.0 2.2E-08 7.5E-13 82.2 18.0 128 123-253 3-130 (136)
90 3mv2_B Coatomer subunit epsilo 99.0 5.5E-08 1.9E-12 91.4 22.2 247 98-368 25-290 (310)
91 4e6h_A MRNA 3'-END-processing 99.0 6.4E-07 2.2E-11 94.5 31.4 137 80-218 61-221 (679)
92 3mv2_B Coatomer subunit epsilo 99.0 4.7E-08 1.6E-12 91.9 19.5 184 140-333 85-287 (310)
93 3qky_A Outer membrane assembly 99.0 3.6E-08 1.2E-12 92.0 18.9 62 230-291 152-224 (261)
94 3dra_A Protein farnesyltransfe 99.0 6.3E-07 2.2E-11 85.0 27.2 214 208-426 50-286 (306)
95 3urz_A Uncharacterized protein 98.9 4.2E-08 1.4E-12 88.2 18.1 184 121-334 4-192 (208)
96 3rjv_A Putative SEL1 repeat pr 98.9 1.4E-07 4.8E-12 85.0 21.3 176 104-292 4-198 (212)
97 4e6h_A MRNA 3'-END-processing 98.9 1.6E-06 5.5E-11 91.5 32.3 326 98-428 112-571 (679)
98 2pzi_A Probable serine/threoni 98.9 1.5E-08 5.2E-13 108.4 15.3 173 132-312 402-583 (681)
99 3qky_A Outer membrane assembly 98.9 8.6E-08 2.9E-12 89.4 18.7 63 120-184 14-80 (261)
100 3rjv_A Putative SEL1 repeat pr 98.9 1.9E-07 6.6E-12 84.1 20.4 175 139-327 4-198 (212)
101 3urz_A Uncharacterized protein 98.9 1.1E-07 3.7E-12 85.5 18.4 174 92-290 10-185 (208)
102 2uy1_A Cleavage stimulation fa 98.9 3.8E-06 1.3E-10 85.8 30.7 316 100-426 28-412 (493)
103 3dra_A Protein farnesyltransfe 98.8 3.3E-06 1.1E-10 80.1 28.0 225 138-368 50-296 (306)
104 2vsy_A XCC0866; transferase, g 98.8 9E-08 3.1E-12 100.3 18.6 154 99-256 2-158 (568)
105 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.3E-07 1.5E-11 82.6 20.8 187 120-325 3-212 (225)
106 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.1E-07 1.4E-11 82.7 20.5 177 93-293 11-215 (225)
107 3qou_A Protein YBBN; thioredox 98.8 1E-07 3.5E-12 90.4 16.7 166 120-289 116-282 (287)
108 2r5s_A Uncharacterized protein 98.8 6.8E-08 2.3E-12 84.2 14.1 62 226-287 108-169 (176)
109 3qou_A Protein YBBN; thioredox 98.8 1.3E-07 4.3E-12 89.8 16.8 167 153-324 114-282 (287)
110 2ifu_A Gamma-SNAP; membrane fu 98.8 2.9E-07 1E-11 88.2 19.3 201 98-324 3-222 (307)
111 2vsy_A XCC0866; transferase, g 98.8 1.9E-07 6.4E-12 97.9 19.2 155 134-293 2-159 (568)
112 2r5s_A Uncharacterized protein 98.8 6.3E-08 2.1E-12 84.4 13.0 159 161-324 11-171 (176)
113 4ga2_A E3 SUMO-protein ligase 98.8 3.3E-08 1.1E-12 83.7 9.8 139 98-240 9-148 (150)
114 4ga2_A E3 SUMO-protein ligase 98.8 8.1E-08 2.8E-12 81.3 12.2 145 127-277 3-149 (150)
115 3q7a_A Farnesyltransferase alp 98.7 9.9E-06 3.4E-10 77.6 26.0 228 159-425 57-329 (349)
116 2ifu_A Gamma-SNAP; membrane fu 98.7 3E-07 1E-11 88.0 15.1 205 134-365 4-228 (307)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.6E-06 5.6E-11 77.6 18.7 123 162-291 12-150 (213)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.8E-06 6.1E-11 77.4 18.3 128 193-326 8-150 (213)
119 3u3w_A Transcriptional activat 98.6 5E-06 1.7E-10 78.9 21.8 161 163-324 82-264 (293)
120 2c2l_A CHIP, carboxy terminus 98.6 3.3E-07 1.1E-11 86.6 13.2 98 190-290 3-100 (281)
121 1a17_A Serine/threonine protei 98.6 1.8E-06 6.3E-11 73.6 16.9 127 193-323 15-143 (166)
122 3u3w_A Transcriptional activat 98.6 1.7E-06 5.7E-11 82.2 17.6 165 126-290 80-265 (293)
123 4gco_A Protein STI-1; structur 98.6 2.3E-06 7.8E-11 69.8 15.6 94 194-290 16-109 (126)
124 1na0_A Designed protein CTPR3; 98.6 3.3E-06 1.1E-10 67.8 16.5 95 193-290 11-105 (125)
125 1a17_A Serine/threonine protei 98.5 3.9E-06 1.4E-10 71.5 16.9 128 158-289 15-144 (166)
126 4b4t_Q 26S proteasome regulato 98.5 1.3E-05 4.5E-10 80.3 23.4 259 89-347 7-311 (434)
127 2qfc_A PLCR protein; TPR, HTH, 98.5 9.4E-06 3.2E-10 76.9 21.0 96 228-323 157-263 (293)
128 4gco_A Protein STI-1; structur 98.5 2.6E-06 8.9E-11 69.4 14.8 101 227-332 14-114 (126)
129 3gw4_A Uncharacterized protein 98.5 1.3E-06 4.5E-11 77.4 14.0 97 193-289 68-174 (203)
130 2vyi_A SGTA protein; chaperone 98.5 3.7E-06 1.3E-10 68.2 15.5 117 192-312 13-129 (131)
131 3q7a_A Farnesyltransferase alp 98.5 8.1E-05 2.8E-09 71.3 26.8 170 137-312 70-257 (349)
132 4f3v_A ESX-1 secretion system 98.5 3.2E-06 1.1E-10 78.3 16.6 187 98-291 18-237 (282)
133 2qfc_A PLCR protein; TPR, HTH, 98.5 1.2E-05 4.2E-10 76.1 21.1 168 192-359 76-265 (293)
134 1na0_A Designed protein CTPR3; 98.5 5.4E-06 1.9E-10 66.5 16.1 96 122-219 10-105 (125)
135 3dss_A Geranylgeranyl transfer 98.5 8.9E-05 3.1E-09 70.7 26.8 227 132-366 40-310 (331)
136 3gyz_A Chaperone protein IPGC; 98.5 1.3E-06 4.4E-11 73.7 12.6 96 227-325 37-132 (151)
137 2e2e_A Formate-dependent nitri 98.5 8.5E-07 2.9E-11 77.1 11.7 119 203-325 22-143 (177)
138 2uy1_A Cleavage stimulation fa 98.5 2.3E-05 7.7E-10 80.1 23.9 209 98-326 6-242 (493)
139 3gw4_A Uncharacterized protein 98.5 1.5E-06 5E-11 77.1 13.2 156 98-254 4-175 (203)
140 2lni_A Stress-induced-phosphop 98.5 3.2E-06 1.1E-10 69.0 14.2 94 193-289 18-111 (133)
141 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4.1E-11 76.1 12.1 123 96-221 20-145 (177)
142 4f3v_A ESX-1 secretion system 98.5 7.7E-06 2.6E-10 75.8 17.2 187 133-326 18-237 (282)
143 3gyz_A Chaperone protein IPGC; 98.5 5.4E-06 1.9E-10 69.9 14.9 99 191-292 36-134 (151)
144 2vyi_A SGTA protein; chaperone 98.4 6.3E-06 2.1E-10 66.8 15.0 118 120-240 11-128 (131)
145 1p5q_A FKBP52, FK506-binding p 98.4 4.2E-06 1.4E-10 81.1 16.1 96 226-324 196-292 (336)
146 2lni_A Stress-induced-phosphop 98.4 5.6E-06 1.9E-10 67.5 14.5 98 120-219 15-112 (133)
147 1p5q_A FKBP52, FK506-binding p 98.4 5.2E-06 1.8E-10 80.4 16.2 132 156-290 147-293 (336)
148 2c2l_A CHIP, carboxy terminus 98.4 1.8E-06 6E-11 81.5 12.3 98 120-219 3-100 (281)
149 2vgx_A Chaperone SYCD; alterna 98.4 1.8E-06 6.1E-11 72.7 10.0 96 227-325 22-117 (148)
150 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-06 3.7E-11 78.0 8.2 61 193-254 90-150 (198)
151 3upv_A Heat shock protein STI1 98.3 1.3E-05 4.6E-10 64.9 14.2 95 228-325 6-100 (126)
152 2vgx_A Chaperone SYCD; alterna 98.3 2.6E-06 8.8E-11 71.7 9.9 98 191-291 21-118 (148)
153 1elw_A TPR1-domain of HOP; HOP 98.3 3.2E-05 1.1E-09 61.1 15.7 60 228-289 40-99 (118)
154 4gcn_A Protein STI-1; structur 98.3 1.3E-05 4.5E-10 65.3 13.4 96 228-325 10-111 (127)
155 3upv_A Heat shock protein STI1 98.3 1.9E-05 6.6E-10 63.9 14.5 96 192-290 5-100 (126)
156 2fbn_A 70 kDa peptidylprolyl i 98.3 2E-05 6.7E-10 69.8 14.9 96 227-325 89-185 (198)
157 3dss_A Geranylgeranyl transfer 98.3 0.00063 2.2E-08 64.8 26.0 193 208-428 91-305 (331)
158 1elw_A TPR1-domain of HOP; HOP 98.3 5.2E-05 1.8E-09 59.9 15.8 95 159-255 7-101 (118)
159 3q49_B STIP1 homology and U bo 98.2 3.9E-05 1.3E-09 62.9 14.5 96 191-289 9-104 (137)
160 2kck_A TPR repeat; tetratricop 98.2 1.6E-05 5.5E-10 62.3 11.7 56 198-254 13-68 (112)
161 2xcb_A PCRH, regulatory protei 98.2 2.2E-05 7.5E-10 65.3 13.0 86 200-288 27-112 (142)
162 3sz7_A HSC70 cochaperone (SGT) 98.2 3.3E-05 1.1E-09 65.9 14.4 96 192-290 12-107 (164)
163 2xcb_A PCRH, regulatory protei 98.2 2.2E-05 7.6E-10 65.2 13.0 97 226-325 18-114 (142)
164 2dba_A Smooth muscle cell asso 98.2 7.6E-05 2.6E-09 61.9 16.2 95 192-290 29-127 (148)
165 1elr_A TPR2A-domain of HOP; HO 98.2 1.8E-05 6.1E-10 64.0 12.0 96 194-290 7-107 (131)
166 3q49_B STIP1 homology and U bo 98.2 4.1E-05 1.4E-09 62.8 14.3 98 225-325 8-105 (137)
167 4b4t_Q 26S proteasome regulato 98.2 0.00012 4.1E-09 73.2 20.3 198 128-325 11-244 (434)
168 2dba_A Smooth muscle cell asso 98.2 7.7E-05 2.6E-09 61.8 15.8 100 118-220 25-128 (148)
169 4gcn_A Protein STI-1; structur 98.2 4.2E-05 1.5E-09 62.2 13.6 97 122-219 9-111 (127)
170 3sz7_A HSC70 cochaperone (SGT) 98.2 3.1E-05 1.1E-09 66.1 13.4 98 225-325 10-107 (164)
171 1elr_A TPR2A-domain of HOP; HO 98.1 4E-05 1.4E-09 61.9 13.3 110 226-339 4-119 (131)
172 2kck_A TPR repeat; tetratricop 98.1 2.9E-05 1E-09 60.8 11.6 101 225-327 5-107 (112)
173 1hxi_A PEX5, peroxisome target 98.1 2.9E-05 9.8E-10 62.6 11.4 91 232-325 23-113 (121)
174 1wao_1 Serine/threonine protei 98.1 4.3E-05 1.5E-09 77.8 14.8 118 200-321 15-134 (477)
175 1hxi_A PEX5, peroxisome target 98.1 4.1E-05 1.4E-09 61.7 11.3 91 197-290 23-113 (121)
176 3ro3_A PINS homolog, G-protein 98.0 3.8E-05 1.3E-09 64.6 11.5 133 193-325 11-157 (164)
177 3ro3_A PINS homolog, G-protein 98.0 3.1E-05 1.1E-09 65.1 10.7 131 122-252 10-155 (164)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 8.1E-05 2.8E-09 75.3 14.6 96 226-324 317-413 (457)
179 1dce_A Protein (RAB geranylger 97.9 0.0011 3.7E-08 68.8 22.0 169 206-379 44-240 (567)
180 3rkv_A Putative peptidylprolyl 97.9 0.00011 3.7E-09 62.5 12.1 62 263-325 64-125 (162)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00017 5.8E-09 73.0 15.3 131 156-289 268-413 (457)
182 2xev_A YBGF; tetratricopeptide 97.9 0.00049 1.7E-08 55.4 15.4 89 199-290 10-104 (129)
183 2xev_A YBGF; tetratricopeptide 97.9 0.00025 8.7E-09 57.2 13.7 95 230-326 6-105 (129)
184 3k9i_A BH0479 protein; putativ 97.9 1.8E-05 6.2E-10 63.2 6.3 19 232-250 67-85 (117)
185 1ihg_A Cyclophilin 40; ppiase 97.9 0.00017 5.7E-09 70.7 14.4 121 194-317 226-361 (370)
186 3k9i_A BH0479 protein; putativ 97.8 4.3E-05 1.5E-09 61.0 7.7 86 204-291 3-90 (117)
187 3rkv_A Putative peptidylprolyl 97.8 0.00021 7.3E-09 60.6 12.6 65 225-291 62-126 (162)
188 1wao_1 Serine/threonine protei 97.8 5.8E-05 2E-09 76.8 10.4 118 95-215 15-134 (477)
189 1dce_A Protein (RAB geranylger 97.8 0.0015 5.1E-08 67.8 20.5 174 136-315 44-244 (567)
190 2if4_A ATFKBP42; FKBP-like, al 97.8 9.5E-05 3.2E-09 71.5 10.4 95 228-325 232-327 (338)
191 1ihg_A Cyclophilin 40; ppiase 97.8 0.00025 8.5E-09 69.5 13.4 123 158-283 225-362 (370)
192 2if4_A ATFKBP42; FKBP-like, al 97.7 9.9E-05 3.4E-09 71.4 9.8 151 191-364 179-332 (338)
193 2hr2_A Hypothetical protein; a 97.7 0.00048 1.6E-08 57.6 12.3 59 196-254 16-85 (159)
194 1klx_A Cysteine rich protein B 97.7 0.0015 5.1E-08 53.8 14.9 15 240-254 111-125 (138)
195 2hr2_A Hypothetical protein; a 97.7 0.00063 2.2E-08 56.9 12.2 100 226-325 11-130 (159)
196 1klx_A Cysteine rich protein B 97.6 0.002 7E-08 52.9 15.2 111 170-292 9-127 (138)
197 3n71_A Histone lysine methyltr 97.6 0.00031 1.1E-08 71.2 11.1 125 201-325 319-463 (490)
198 3n71_A Histone lysine methyltr 97.6 0.00026 8.7E-09 71.8 10.0 88 131-218 319-420 (490)
199 2l6j_A TPR repeat-containing p 97.5 0.00011 3.9E-09 57.4 5.8 91 226-320 4-101 (111)
200 2l6j_A TPR repeat-containing p 97.5 0.00011 3.8E-09 57.5 5.5 90 191-283 4-99 (111)
201 2kat_A Uncharacterized protein 97.5 0.00055 1.9E-08 54.1 9.4 78 210-290 4-81 (115)
202 1na3_A Designed protein CTPR2; 97.4 0.0019 6.4E-08 48.1 11.0 59 195-254 13-71 (91)
203 1zu2_A Mitochondrial import re 97.4 0.00045 1.5E-08 57.7 7.8 100 97-200 13-133 (158)
204 1na3_A Designed protein CTPR2; 97.4 0.0022 7.4E-08 47.7 11.2 80 226-308 9-88 (91)
205 1zu2_A Mitochondrial import re 97.4 0.0005 1.7E-08 57.4 7.8 35 240-276 16-50 (158)
206 2kat_A Uncharacterized protein 97.4 0.0012 4.1E-08 52.1 9.9 79 244-325 3-81 (115)
207 3ma5_A Tetratricopeptide repea 97.2 0.0015 5E-08 50.2 8.0 61 192-253 8-68 (100)
208 3ma5_A Tetratricopeptide repea 97.0 0.0041 1.4E-07 47.6 8.9 64 225-290 6-69 (100)
209 3ly7_A Transcriptional activat 96.7 0.033 1.1E-06 53.3 14.3 83 259-345 274-356 (372)
210 2kc7_A BFR218_protein; tetratr 96.6 0.0088 3E-07 45.3 8.4 56 234-291 8-64 (99)
211 3mkq_A Coatomer beta'-subunit; 96.5 0.097 3.3E-06 56.6 19.1 27 262-288 681-707 (814)
212 3mkq_A Coatomer beta'-subunit; 96.4 0.061 2.1E-06 58.3 16.8 47 201-253 662-708 (814)
213 3qww_A SET and MYND domain-con 96.4 0.0079 2.7E-07 59.8 8.6 85 135-219 312-410 (433)
214 3ly7_A Transcriptional activat 96.4 0.062 2.1E-06 51.4 14.1 73 224-301 275-347 (372)
215 3qww_A SET and MYND domain-con 96.3 0.011 3.8E-07 58.7 9.1 62 263-324 341-409 (433)
216 2kc7_A BFR218_protein; tetratr 96.3 0.0092 3.1E-07 45.2 6.7 56 199-255 8-64 (99)
217 3qwp_A SET and MYND domain-con 96.2 0.016 5.6E-07 57.5 9.7 87 238-324 299-398 (429)
218 3qwp_A SET and MYND domain-con 96.1 0.042 1.4E-06 54.5 11.9 93 198-290 294-399 (429)
219 3mkq_B Coatomer subunit alpha; 95.6 0.85 2.9E-05 38.4 17.0 44 98-147 17-60 (177)
220 3mkq_B Coatomer subunit alpha; 95.4 1 3.5E-05 38.0 16.5 44 203-252 17-60 (177)
221 3bee_A Putative YFRE protein; 95.3 0.41 1.4E-05 35.7 12.1 46 208-254 26-71 (93)
222 1pc2_A Mitochondria fission pr 95.3 0.11 3.8E-06 42.7 9.4 78 245-325 17-99 (152)
223 3bee_A Putative YFRE protein; 95.2 0.15 5.2E-06 38.2 9.4 64 225-290 5-71 (93)
224 3u64_A Protein TP_0956; tetrat 94.9 0.28 9.5E-06 45.0 11.7 92 242-336 179-281 (301)
225 2v5f_A Prolyl 4-hydroxylase su 94.7 0.36 1.2E-05 36.8 10.6 28 227-254 47-74 (104)
226 2v5f_A Prolyl 4-hydroxylase su 94.5 0.21 7.4E-06 38.1 8.9 65 120-184 4-74 (104)
227 1wy6_A Hypothetical protein ST 94.4 1.5 5.3E-05 34.8 15.5 138 134-294 20-157 (172)
228 1pc2_A Mitochondria fission pr 94.3 0.44 1.5E-05 39.2 10.6 79 175-255 17-100 (152)
229 3fau_A NEDD4-binding protein 2 94.3 0.11 3.6E-06 37.9 6.2 77 442-521 2-79 (82)
230 2d9i_A NEDD4-binding protein 2 93.7 0.4 1.4E-05 36.0 8.6 78 441-521 9-87 (96)
231 3u64_A Protein TP_0956; tetrat 93.3 0.66 2.3E-05 42.6 10.7 93 101-195 178-281 (301)
232 4h7y_A Dual specificity protei 93.2 1.6 5.4E-05 35.5 11.6 102 120-223 12-126 (161)
233 2vkc_A NEDD4-binding protein 2 92.7 0.42 1.5E-05 38.5 7.8 78 441-521 54-132 (135)
234 4ady_A RPN2, 26S proteasome re 92.1 9.2 0.00031 41.4 19.2 251 98-359 386-657 (963)
235 4gns_B Protein CSD3, chitin bi 91.9 0.85 2.9E-05 48.2 11.0 127 160-288 252-397 (754)
236 4b4t_P 26S proteasome regulato 91.9 11 0.00036 37.3 21.2 190 99-290 29-246 (445)
237 1wy6_A Hypothetical protein ST 91.1 4.9 0.00017 32.0 14.5 141 166-329 17-157 (172)
238 4h7y_A Dual specificity protei 91.0 1.9 6.6E-05 35.0 9.6 54 240-295 74-127 (161)
239 1nzn_A CGI-135 protein, fissio 90.0 2.3 8E-05 33.5 9.2 90 276-367 15-110 (126)
240 1nzn_A CGI-135 protein, fissio 89.9 2.5 8.5E-05 33.3 9.3 23 232-254 80-102 (126)
241 4ady_A RPN2, 26S proteasome re 89.7 6 0.00021 42.7 15.0 152 236-397 500-660 (963)
242 4gns_B Protein CSD3, chitin bi 89.5 7.7 0.00026 41.0 15.5 131 193-324 250-398 (754)
243 3lpz_A GET4 (YOR164C homolog); 89.3 14 0.00049 34.6 28.0 167 123-324 37-214 (336)
244 2ff4_A Probable regulatory pro 88.9 2.1 7E-05 41.7 10.2 71 266-337 175-250 (388)
245 3lpz_A GET4 (YOR164C homolog); 88.7 16 0.00054 34.3 17.5 25 402-426 191-215 (336)
246 2ff4_A Probable regulatory pro 87.9 2.3 8E-05 41.2 9.9 72 158-230 173-249 (388)
247 3lvg_A Clathrin heavy chain 1; 85.3 0.011 3.6E-07 58.1 -8.2 261 120-418 53-324 (624)
248 1v54_E Cytochrome C oxidase po 85.0 4 0.00014 30.5 7.2 48 172-219 26-73 (109)
249 4fhn_B Nucleoporin NUP120; pro 85.0 23 0.00078 39.8 17.2 51 127-182 818-868 (1139)
250 2wpv_A GET4, UPF0363 protein Y 83.7 28 0.00095 32.3 17.3 20 406-425 196-215 (312)
251 1v54_E Cytochrome C oxidase po 81.7 13 0.00046 27.7 8.8 47 209-255 28-74 (109)
252 4b4t_P 26S proteasome regulato 81.0 44 0.0015 32.8 19.7 189 135-325 30-246 (445)
253 4fhn_B Nucleoporin NUP120; pro 79.6 21 0.00073 40.0 14.3 164 95-281 821-990 (1139)
254 2y69_E Cytochrome C oxidase su 79.6 13 0.00044 29.5 8.6 49 172-220 69-117 (152)
255 3ltm_A Alpha-REP4; protein eng 77.3 33 0.0011 29.2 17.3 17 225-241 94-110 (211)
256 3o48_A Mitochondria fission 1 76.8 25 0.00086 27.8 9.7 67 259-325 37-106 (134)
257 2y69_E Cytochrome C oxidase su 75.1 23 0.00079 28.1 8.8 47 209-255 71-117 (152)
258 3ffl_A Anaphase-promoting comp 73.6 29 0.00099 28.7 9.7 27 298-324 123-149 (167)
259 3eiq_C Programmed cell death p 73.2 54 0.0018 31.0 13.0 69 264-333 219-289 (358)
260 4b4t_R RPN7, 26S proteasome re 72.9 20 0.00069 35.1 10.5 60 123-182 133-194 (429)
261 3o48_A Mitochondria fission 1 72.4 34 0.0012 27.0 10.0 73 116-190 35-110 (134)
262 2p58_C Putative type III secre 71.4 29 0.00099 25.8 8.2 85 171-265 22-106 (116)
263 4b4t_R RPN7, 26S proteasome re 71.2 43 0.0015 32.7 12.4 62 193-254 133-196 (429)
264 3ffl_A Anaphase-promoting comp 70.3 26 0.0009 28.9 8.8 56 92-147 26-89 (167)
265 3esl_A Checkpoint serine/threo 69.3 35 0.0012 29.2 9.6 55 241-295 94-148 (202)
266 2uwj_G Type III export protein 67.1 28 0.00095 25.9 7.2 78 171-256 21-98 (115)
267 2p58_C Putative type III secre 65.8 37 0.0013 25.3 7.7 76 206-290 22-97 (116)
268 3lvg_A Clathrin heavy chain 1; 65.7 0.0028 9.6E-08 62.0 -18.2 230 98-356 66-316 (624)
269 2zu6_B Programmed cell death p 64.8 12 0.00041 34.7 6.4 67 265-332 169-237 (307)
270 1qsa_A Protein (soluble lytic 63.8 1.4E+02 0.0047 30.8 24.7 310 94-425 14-346 (618)
271 2uwj_G Type III export protein 62.4 36 0.0012 25.3 7.1 77 206-291 21-97 (115)
272 2wpv_A GET4, UPF0363 protein Y 61.1 1E+02 0.0035 28.4 25.5 167 123-324 35-215 (312)
273 3esl_A Checkpoint serine/threo 60.4 62 0.0021 27.7 9.5 53 137-189 95-148 (202)
274 1zbp_A Hypothetical protein VP 59.6 25 0.00084 31.7 7.2 52 237-290 8-59 (273)
275 3ltm_A Alpha-REP4; protein eng 59.1 81 0.0028 26.6 19.0 169 119-308 31-199 (211)
276 2wvi_A Mitotic checkpoint seri 58.6 33 0.0011 28.3 7.3 51 245-295 79-129 (164)
277 3txn_A 26S proteasome regulato 58.3 1.3E+02 0.0045 28.8 26.5 295 123-430 21-346 (394)
278 2nsz_A Programmed cell death p 57.9 39 0.0013 26.6 7.5 65 265-330 10-76 (129)
279 4a1g_A Mitotic checkpoint seri 56.1 37 0.0013 27.6 7.1 51 245-295 84-134 (152)
280 2qx5_A Nucleoporin NIC96; mRNA 55.5 1.9E+02 0.0066 29.9 14.1 92 339-433 450-570 (661)
281 2zqe_A MUTS2 protein; alpha/be 55.2 31 0.0011 24.6 5.9 68 442-520 6-78 (83)
282 3qd7_X Uncharacterized protein 53.7 23 0.0008 28.2 5.5 73 442-520 49-127 (137)
283 3eiq_C Programmed cell death p 52.2 1.3E+02 0.0043 28.5 11.2 65 228-294 219-285 (358)
284 2nsz_A Programmed cell death p 50.6 70 0.0024 25.0 7.9 65 124-189 10-76 (129)
285 1wdy_A 2-5A-dependent ribonucl 49.6 16 0.00055 32.7 4.7 83 95-189 11-98 (285)
286 2ion_A PDCD4, programmed cell 49.2 36 0.0012 27.6 6.1 64 265-329 12-77 (152)
287 1k1a_A B-cell lymphoma 3-encod 47.7 16 0.00053 32.0 4.1 24 95-118 15-38 (241)
288 2d2s_A Exocyst complex compone 47.4 1E+02 0.0035 27.1 9.2 88 127-217 24-117 (235)
289 1qsa_A Protein (soluble lytic 46.6 2.6E+02 0.0088 28.7 25.1 266 77-359 61-347 (618)
290 4aez_C MAD3, mitotic spindle c 46.1 38 0.0013 29.5 6.0 52 244-295 132-183 (223)
291 3pvs_A Replication-associated 44.7 2.3E+02 0.0079 27.6 12.6 137 101-256 166-325 (447)
292 4a1g_A Mitotic checkpoint seri 44.3 1.3E+02 0.0043 24.4 8.8 50 175-224 84-134 (152)
293 3ltj_A Alpharep-4; protein eng 44.0 1.4E+02 0.0047 24.8 20.1 153 119-289 26-178 (201)
294 1y8m_A FIS1; mitochondria, unk 43.8 1.2E+02 0.0042 24.2 13.1 24 302-325 82-105 (144)
295 2ion_A PDCD4, programmed cell 42.8 61 0.0021 26.3 6.5 65 124-189 12-78 (152)
296 1y8m_A FIS1; mitochondria, unk 40.8 1.4E+02 0.0047 23.9 12.9 22 233-254 84-105 (144)
297 1k1a_A B-cell lymphoma 3-encod 40.0 25 0.00087 30.5 4.2 84 128-215 13-100 (241)
298 2d2s_A Exocyst complex compone 38.9 1.5E+02 0.0052 26.0 9.0 90 161-253 23-118 (235)
299 2wvi_A Mitotic checkpoint seri 38.2 1.7E+02 0.0057 24.1 9.1 50 140-189 79-129 (164)
300 1wdy_A 2-5A-dependent ribonucl 37.0 47 0.0016 29.5 5.7 25 405-433 257-281 (285)
301 3bbo_K Ribosomal protein L11; 36.1 19 0.00065 31.0 2.5 16 1-16 1-20 (224)
302 1oyz_A Hypothetical protein YI 36.0 2.3E+02 0.0078 25.0 21.7 48 119-170 35-82 (280)
303 3aji_A 26S proteasome non-ATPa 35.7 40 0.0014 29.0 4.8 18 95-112 12-29 (231)
304 4fke_A Aminopeptidase N; zinc 35.1 2.9E+02 0.01 29.9 12.3 157 126-290 691-859 (909)
305 1zbp_A Hypothetical protein VP 33.9 2.6E+02 0.0089 25.1 14.3 52 167-219 8-59 (273)
306 3l6a_A Eukaryotic translation 32.9 3.2E+02 0.011 25.8 14.3 61 125-189 16-81 (364)
307 3kae_A CDC27, possible protein 32.9 2.1E+02 0.0073 23.7 10.9 35 292-326 201-237 (242)
308 3e3v_A Regulatory protein RECX 32.7 2.1E+02 0.0072 23.7 10.0 50 173-223 50-99 (177)
309 1ug3_A EIF4GI, eukaryotic prot 31.6 1.3E+02 0.0045 28.1 7.9 24 125-148 15-38 (339)
310 2xig_A Ferric uptake regulatio 31.6 2E+02 0.0068 23.0 8.1 59 182-241 18-76 (150)
311 2r9g_A AAA ATPase, central reg 31.0 2.5E+02 0.0084 23.9 9.2 35 205-240 28-62 (204)
312 3ltj_A Alpharep-4; protein eng 30.9 2.3E+02 0.0077 23.4 18.8 111 154-277 26-136 (201)
313 3eu9_A Huntingtin-interacting 30.8 17 0.00057 31.6 1.4 115 93-223 13-134 (240)
314 4fke_A Aminopeptidase N; zinc 30.5 5.5E+02 0.019 27.7 15.4 33 131-166 604-638 (909)
315 2xig_A Ferric uptake regulatio 30.5 1.8E+02 0.0061 23.3 7.5 58 288-346 18-75 (150)
316 3bge_A Predicted ATPase; struc 30.0 2.5E+02 0.0084 23.8 8.2 30 169-198 20-49 (201)
317 3aji_A 26S proteasome non-ATPa 28.5 58 0.002 27.9 4.6 111 128-249 10-126 (231)
318 3jxi_A Vanilloid receptor-rela 28.4 16 0.00054 32.5 0.8 25 131-155 12-36 (260)
319 3bu8_A Telomeric repeat-bindin 27.8 2E+02 0.0068 24.8 7.2 49 102-150 88-143 (235)
320 2fe3_A Peroxide operon regulat 27.4 2E+02 0.0069 22.7 7.3 58 288-346 13-70 (145)
321 1mzb_A Ferric uptake regulatio 27.1 2.1E+02 0.007 22.4 7.2 34 207-240 34-67 (136)
322 3d5l_A Regulatory protein RECX 26.9 3.1E+02 0.01 23.6 10.1 53 171-224 91-143 (221)
323 2fe3_A Peroxide operon regulat 26.6 1.9E+02 0.0066 22.8 7.1 58 182-240 13-70 (145)
324 1ug3_A EIF4GI, eukaryotic prot 26.6 1.2E+02 0.0039 28.5 6.5 63 228-293 13-77 (339)
325 3ljn_A Hypothetical protein; a 26.4 41 0.0014 31.6 3.4 17 93-109 24-40 (364)
326 3pvs_A Replication-associated 25.9 4.6E+02 0.016 25.4 12.4 54 274-327 267-325 (447)
327 3bu8_A Telomeric repeat-bindin 25.2 2.8E+02 0.0097 23.9 7.7 48 208-255 89-143 (235)
328 3ctd_A Putative ATPase, AAA fa 24.4 3.4E+02 0.012 23.3 8.7 33 169-201 48-80 (213)
329 3bqo_A Telomeric repeat-bindin 24.3 1.4E+02 0.0047 25.4 5.6 44 382-425 94-144 (211)
330 2r9g_A AAA ATPase, central reg 24.3 3.3E+02 0.011 23.1 10.1 54 238-293 26-84 (204)
331 3eyy_A Putative iron uptake re 24.1 1.9E+02 0.0064 23.0 6.5 31 210-240 36-66 (145)
332 2w57_A Ferric uptake regulatio 24.1 2.2E+02 0.0075 22.7 6.9 34 208-241 34-67 (150)
333 4aez_C MAD3, mitotic spindle c 24.1 2.8E+02 0.0096 24.0 7.8 54 279-332 131-185 (223)
334 3bge_A Predicted ATPase; struc 24.0 3.3E+02 0.011 23.1 8.2 38 310-347 20-57 (201)
335 3kae_A CDC27, possible protein 23.6 3.2E+02 0.011 22.7 8.5 23 406-428 216-238 (242)
336 3hra_A Ankyrin repeat family p 23.5 46 0.0016 27.8 2.8 15 282-296 158-172 (201)
337 1oyz_A Hypothetical protein YI 23.1 3.8E+02 0.013 23.4 23.6 183 154-353 35-227 (280)
338 1mzb_A Ferric uptake regulatio 22.5 2.2E+02 0.0074 22.2 6.5 16 171-186 33-48 (136)
339 1bpo_A Protein (clathrin); cla 22.2 4.6E+02 0.016 25.7 9.6 135 108-252 348-482 (494)
340 3rjo_A Endoplasmic reticulum a 21.4 5.4E+02 0.018 24.6 22.7 156 228-393 199-371 (419)
341 2fu4_A Ferric uptake regulatio 21.4 2.1E+02 0.0071 19.7 7.0 29 210-238 36-64 (83)
342 3txn_A 26S proteasome regulato 21.1 5.4E+02 0.019 24.5 23.1 238 90-333 23-290 (394)
343 4ets_A Ferric uptake regulatio 20.9 1.7E+02 0.006 23.7 5.8 59 288-347 24-84 (162)
344 2f6m_A Suppressor protein STP2 20.7 1.5E+02 0.005 20.0 4.1 41 196-237 7-47 (65)
345 2w57_A Ferric uptake regulatio 20.7 1.9E+02 0.0066 23.0 5.9 58 288-346 8-66 (150)
346 2keb_A DNA polymerase subunit 20.7 2.6E+02 0.0089 20.6 6.6 31 175-205 28-58 (101)
347 3kea_A K1L; tropism, ANK repea 20.3 57 0.0019 29.4 2.9 175 106-296 44-222 (285)
348 1wgl_A TOLL-interacting protei 20.2 1.2E+02 0.0039 20.0 3.5 23 309-331 35-57 (59)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.9e-32 Score=276.05 Aligned_cols=207 Identities=17% Similarity=0.218 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHhCCCccCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------h
Q 009025 103 EMAFGLYDRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR---------P 172 (546)
Q Consensus 103 ~~A~~l~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~ 172 (546)
..+..+++.+.+.+....+. .++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34566677777777665554 6888999999999999999999999999999999999999999987765 6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
+.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 310 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 310 (546)
.+.|. .||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 167 ~~~G~-~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEV-VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCC-CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99996 9999999999999999999999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.7e-31 Score=274.05 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------h
Q 009025 138 DGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY---------G 207 (546)
Q Consensus 138 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~ 207 (546)
..+..+.+++.+.++...+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456677788777766554 46889999999999999999999999999999999999999999988765 6
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
++|.++|++|.+.|+.||..|||+||.+|++.|++++|+++|++|.+.|. .||..||++||.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 345 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 345 (546)
|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..+...
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999988764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.3e-28 Score=261.31 Aligned_cols=328 Identities=9% Similarity=-0.037 Sum_probs=228.7
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++.+|.+.|
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHh
Confidence 4556667888899999999888854 567788888888888888888888888887543 567778888888888888
Q ss_pred ChhHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------------
Q 009025 171 RPWQVKTIYKEMTDN---------------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM------------- 222 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~------------- 222 (546)
++++|.++|+++... |...+..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence 888888888743221 2234577888888888888888888888877754331
Q ss_pred ---------------------------------------------------------CcCHHHHHHHHHHHHhcCCHHHH
Q 009025 223 ---------------------------------------------------------QLSVTLYNTLLAMCADVGYTDEA 245 (546)
Q Consensus 223 ---------------------------------------------------------~~~~~~~~~li~~~~~~g~~~~A 245 (546)
+++..+|+.++.+|.+.|++++|
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 25778888888889999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. ..+..+|+.++..|.+.|++++|.++|+++.+
T Consensus 325 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 325 LAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 98888888765 4456666667777777777777777777666433 23566666666667777777777777766665
Q ss_pred CCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--CccchhhH
Q 009025 326 LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCN 402 (546)
Q Consensus 326 ~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~ 402 (546)
.. ..+..+|..++.++.+.|+ ++|.++++.+.+..|.....+..++.+|.+.| ..++|.++|+++.. +.+..+|+
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~ 479 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG-NILLANEYLQSSYALFQYDPLLLN 479 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHH
Confidence 32 1235566666666666666 66666666666666666566666666666666 34666666666532 22445666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 403 CLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
.++.+|.+.|++++|.++|++|.+.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6666666667777776666666654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.9e-28 Score=258.69 Aligned_cols=361 Identities=14% Similarity=0.007 Sum_probs=306.3
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---------------CCCCC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI---------------GVKPN 155 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~ 155 (546)
.....+.+.|++++|+.+|+.+... .++..+++.++.+|.+.|++++|+++|+++... +.+.+
T Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (597)
T 2xpi_A 122 WLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE 199 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchh
Confidence 3455667999999999999998654 679999999999999999999999999953221 22345
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------------------------------------------------
Q 009025 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL------------------------------------------------ 187 (546)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~------------------------------------------------ 187 (546)
..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 88999999999999999999999999987542
Q ss_pred ----------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009025 188 ----------------------SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245 (546)
Q Consensus 188 ----------------------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 245 (546)
.++..+++.++.+|.+.|++++|+++|+++.+.+.. +..+|+.++.+|.+.|++++|
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHH
T ss_pred HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHH
Confidence 156778889999999999999999999999987643 788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+
T Consensus 359 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 359 YLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998765 67899999999999999999999999999987543 3688999999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-------Ccc
Q 009025 326 LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-------DVK 397 (546)
Q Consensus 326 ~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-------~~~ 397 (546)
.+ ..+..++..++.+|.+.|+ ++|.++++.+.+..|.....+..++..|.+.| ..++|.++|+++.. .|+
T Consensus 436 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchh
Confidence 53 3477899999999999999 99999999999999988888899999999999 45999999988732 455
Q ss_pred --chhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCccccCccceeecccccch-hhHHHHHHHHHHHHH
Q 009025 398 --KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWINDLS 465 (546)
Q Consensus 398 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~~~ 465 (546)
..+|..++.+|.+.|++++|.++|+++.+.+ |+ +...|..+...+.. |...+|...+.+.++
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TN----DANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5699999999999999999999999999887 55 23344444444443 666777765544443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.7e-23 Score=209.59 Aligned_cols=340 Identities=14% Similarity=0.060 Sum_probs=268.7
Q ss_pred CCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009025 81 NPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN 160 (546)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 160 (546)
.|+++.+..+. ...+.+.|++++|...++...+.. +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+..+|.
T Consensus 29 ~p~~~~~~~~l-~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 105 (388)
T 1w3b_A 29 EPDNTGVLLLL-SSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYI 105 (388)
T ss_dssp CTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHH
Confidence 45555443333 334457888889988888887753 3477888888999999999999999999888763 33456788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
.+..++.+.|++++|.+.|+++.+... .+...+..+...|...|++++|+++|+++.+... -+..+|..+...+...|
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 888888899999999999988887532 2456677788888888999999999988887643 25788888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009025 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRAL 320 (546)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 320 (546)
++++|+..|+++...+ +.+...|..+...+...|++++|...|++....... +..++..+...|.+.|++++|+..|
T Consensus 184 ~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888865 566778888888899999999999999888875432 5778888888999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-c
Q 009025 321 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-K 397 (546)
Q Consensus 321 ~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~ 397 (546)
+++.+.+ ..+..++..+..++.+.|+ ++|...++.+.+..|.....+..++..+...|+ .++|...++++.. .| +
T Consensus 261 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 261 RRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHTTSCTTC
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCc
Confidence 9988743 2245678888888888888 999999999888888888888888888888884 5889888888654 23 4
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 398 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
..+|..++.+|.+.|++++|...|+++.+.. |+
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~ 371 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PT 371 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC
Confidence 5588889999999999999999999887643 55
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.9e-23 Score=209.21 Aligned_cols=350 Identities=15% Similarity=0.073 Sum_probs=295.7
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 175 (546)
+.+.|++++|+..++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3489999999999999988643 367788888899999999999999999988764 56788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
.+.|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.... +...+..+...+...|++++|+++|+++...
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999853 235678999999999999999999999999987533 5677888889999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHH
Q 009025 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRF 334 (546)
Q Consensus 256 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t 334 (546)
. +.+..+|..+...|...|++++|...|+++.+.+.. +...|..+...+...|++++|+..|++..+. .| +..+
T Consensus 165 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 165 Q--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 5 567899999999999999999999999999986543 5788999999999999999999999999874 35 4678
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc--CccchhhHHHHHHHHhc
Q 009025 335 CGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNL 411 (546)
Q Consensus 335 ~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 411 (546)
+..+..++...|+ ++|...++.+.+.+|.....+..++..+.+.|+ .++|.+.|+++.. +.+..+|+.++..+.+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 8999999999999 999999999999999998889999999999994 5999999988643 33567899999999999
Q ss_pred CCHHHHHHHHHHHHhcccccCccccCccceeeccccc-chhhHHHHHHHHH
Q 009025 412 NLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL-SLGAALTALHIWI 461 (546)
Q Consensus 412 g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~-~~g~~~~a~~~~~ 461 (546)
|++++|...++++.+.. |+.. ..|..+...+ ..|...+|+..+.
T Consensus 319 g~~~~A~~~~~~al~~~--p~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF--PEFA----AAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp TCHHHHHHHHHHHTTSC--TTCH----HHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCcH----HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998753 5532 1222222222 2366666665443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2e-21 Score=198.33 Aligned_cols=305 Identities=11% Similarity=0.029 Sum_probs=249.4
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+.+.|++++|+.+|+.+.+.. +.+..+|..+..+|...|++++|+..|+++.+.+ +.+..++..+..++.+.|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 34445558999999999999998764 3478899999999999999999999999998875 446788999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCC-H---HHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPN-W---NTYASL------------LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~-~---~~~~~l------------l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
++++|.+.|+++.+.. |+ . ..+..+ ...|.+.|++++|+.+|+++.+... .+..++..+..
T Consensus 109 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 185 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAE 185 (450)
T ss_dssp CHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 9999999999998853 44 3 555555 3448889999999999999987643 37888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----------
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL----------- 303 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----------- 303 (546)
+|.+.|++++|+++|+++.... +.+..+|..++..|...|++++|...|+++...... +...+..+
T Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 186 CFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765 667899999999999999999999999999875432 44455444
Q ss_pred -HHHHHhcCChhHHHHHHHHhhhCCCCCC-----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhh
Q 009025 304 -IQCYGKAQRTDDVVRALNRLPELGITPD-----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 376 (546)
Q Consensus 304 -i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~ 376 (546)
...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|+ ++|...++.+.+..|+...++..++.++.
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 78889999999999999999873 454 3478888889999999 99999999999888888888888899888
Q ss_pred hhcchHHHHHHHHHhccc-Ccc-chhhHHHHH
Q 009025 377 IEGDFKKEATELFNSISK-DVK-KAYCNCLID 406 (546)
Q Consensus 377 ~~g~~~~~A~~~~~~~~~-~~~-~~~~~~li~ 406 (546)
..|+ .++|...|+.... .|+ ...+..+..
T Consensus 341 ~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 341 IEEM-YDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HTTC-HHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HhcC-HHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 8884 5899998887643 343 446666653
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.7e-20 Score=191.37 Aligned_cols=313 Identities=9% Similarity=-0.020 Sum_probs=259.6
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 009025 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187 (546)
Q Consensus 108 l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 187 (546)
.|..+.... +.+...+..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++++.+
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 90 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK- 90 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 344444332 3477889999999999999999999999998764 4578899999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHH
Q 009025 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV---TLYNTL------------LAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 188 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m 252 (546)
+.+..++..+..+|.+.|++++|.++|+++.+.... +. ..+..+ ...+...|++++|+.+|+++
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346889999999999999999999999999886422 34 556555 44489999999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 253 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
.... +.+..++..++.+|.+.|++++|.++|+++.+... .+..+|..+...|...|++++|+..|+++.+. .|+.
T Consensus 170 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~ 244 (450)
T 2y4t_A 170 LEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDH 244 (450)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCh
Confidence 9875 67889999999999999999999999999987543 36899999999999999999999999999864 4544
Q ss_pred -HHHHHH------------HHHHhcCCH-HHHHHHHHHHHHcCCChhH----HHHHHHHhhhhhcchHHHHHHHHHhcc-
Q 009025 333 -RFCGCL------------LNVMTQTPK-EELGKLVECVEKSNSKLGY----VVKLLLEEQDIEGDFKKEATELFNSIS- 393 (546)
Q Consensus 333 -~t~~~l------------l~~~~~~g~-~~a~~~~~~~~~~~~~~~~----~~~~L~~~~~~~g~~~~~A~~~~~~~~- 393 (546)
..+..+ ..++.+.|+ ++|...++.+.+..|.... .+..++..+.+.|+ .++|...++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK-PVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 334333 788888999 9999999999998888543 55778888999894 599999998864
Q ss_pred cCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccC
Q 009025 394 KDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 394 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
..| +..+|..++.+|.+.|++++|...|+++.+.. |+
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~ 361 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--EN 361 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SS
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cc
Confidence 233 56799999999999999999999999998754 65
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.7e-20 Score=190.68 Aligned_cols=359 Identities=12% Similarity=-0.022 Sum_probs=287.1
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
....+.+.|++++|+..|+++.+.. |+..+|..+..+|.+.|++++|+..|+++.+.+ +.+..+|..+..++.+.|+
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhh
Confidence 3344558999999999999999874 799999999999999999999999999999875 4567899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCC--------------------------------------------------------------
Q 009025 172 PWQVKTIYKEMTDNGLSP-------------------------------------------------------------- 189 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p-------------------------------------------------------------- 189 (546)
+++|...|+++...+...
T Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 999999999998764210
Q ss_pred ----------------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCC--------CcCHHHHHHHHHHHH
Q 009025 190 ----------------NWNTYASLLRAYGR---ARYGEDTLSVYREMKE-----KGM--------QLSVTLYNTLLAMCA 237 (546)
Q Consensus 190 ----------------~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~ 237 (546)
+...+..+...+.. .|++++|+.+|+++.+ ..- +.+..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 12333333333443 8999999999999987 311 224578888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
..|++++|..+|+++.... |+...+..+...|...|++++|...|+++.+... .+...|..+...|...|++++|+
T Consensus 249 ~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999875 3388899999999999999999999999987643 36778999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-C
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-D 395 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~ 395 (546)
..|+++.+... .+...+..+...+...|+ ++|...++.+.+..|.....+..++..+...|+ .++|...++.+.. .
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 325 KDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND-FDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhh
Confidence 99999987532 255788889999999999 999999999999999888888999999999994 5999999987642 1
Q ss_pred c---c----chhhHHHHHHHHh---cCCHHHHHHHHHHHHhcccccCccccCccceeeccccc-chhhHHHHHHHHHHHH
Q 009025 396 V---K----KAYCNCLIDLCVN---LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSL-SLGAALTALHIWINDL 464 (546)
Q Consensus 396 ~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~~~~~~~l~~~-~~g~~~~a~~~~~~~~ 464 (546)
| . ...|..+..+|.. .|++++|...|+++.+.. |+.. ..|......+ ..|...+|...+...+
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSE----QAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccH----HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2 1 2388999999999 999999999999998764 5422 2222222222 2366677765554443
Q ss_pred H
Q 009025 465 S 465 (546)
Q Consensus 465 ~ 465 (546)
+
T Consensus 477 ~ 477 (514)
T 2gw1_A 477 D 477 (514)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.3e-19 Score=183.35 Aligned_cols=331 Identities=12% Similarity=-0.026 Sum_probs=274.5
Q ss_pred hhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----------------
Q 009025 90 LKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK---------------- 153 (546)
Q Consensus 90 l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------------- 153 (546)
......+.+.|++++|+..|+.+.+.++ .+..+|..+..+|.+.|++++|+..|+++.+.+..
T Consensus 43 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (514)
T 2gw1_A 43 SNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121 (514)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Confidence 3445566699999999999999998753 37789999999999999999999999999776420
Q ss_pred -------------------------------------------------------------C-CHHHHHHHHHHHHh---
Q 009025 154 -------------------------------------------------------------P-NMITYNNLLDTMGR--- 168 (546)
Q Consensus 154 -------------------------------------------------------------p-~~~~~~~ll~~~~~--- 168 (546)
| +...+..+...+..
T Consensus 122 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (514)
T 2gw1_A 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201 (514)
T ss_dssp HHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh
Confidence 0 13333333444443
Q ss_pred cCChhHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009025 169 AKRPWQVKTIYKEMTD-----NGLS--------PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235 (546)
Q Consensus 169 ~g~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 235 (546)
.|++++|..+|+++.+ ..-. .+..++..+...|...|++++|..+|+++.+.... ...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 8999999999999988 3111 23567888899999999999999999999987543 8889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 315 (546)
|...|++++|.+.|+++.... +.+..++..+...|...|++++|...|+++.+.... +...+..+...|...|++++
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999875 567889999999999999999999999999986543 57789999999999999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH------HHHHHHHhhhh---hcchHHHH
Q 009025 316 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY------VVKLLLEEQDI---EGDFKKEA 385 (546)
Q Consensus 316 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~------~~~~L~~~~~~---~g~~~~~A 385 (546)
|+..|+++.+.. ..+..++..+...+...|+ ++|...++.+.+..|.... .+..++..+.. .| ..++|
T Consensus 357 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A 434 (514)
T 2gw1_A 357 CETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEA 434 (514)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHH
T ss_pred HHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHH
Confidence 999999998743 2245788889999999999 9999999999887766643 67888888888 88 56999
Q ss_pred HHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 386 TELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 386 ~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
...|+.... .| +..+|..+..+|.+.|++++|...|+++.+..
T Consensus 435 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 435 TNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999988643 33 45688999999999999999999999998765
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.1e-17 Score=164.56 Aligned_cols=300 Identities=9% Similarity=-0.025 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..+|.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 33444444444444444444444444332 1233444444444444444444444444444321 113344444444444
Q ss_pred hcCChHHHHHHHHHHHHcCCC--cCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQ--LSVTLYNTL------------LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 268 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 268 (546)
+.|++++|...|+++.+.... .+...+..+ ...+...|++++|.++|+++.+.. +.+...+..+
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 160 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELR 160 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHH
Confidence 444444444444444433210 022222222 345555555555555555555443 3445555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHH-----------
Q 009025 269 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCG----------- 336 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~----------- 336 (546)
...+...|++++|...++++.+... .+...+..+...|...|++++|...|++..+.. |+. ..+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHH
Confidence 5555555555555555555554322 244555555555555555555555555555421 221 1111
Q ss_pred -HHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH----HHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHH
Q 009025 337 -CLLNVMTQTPK-EELGKLVECVEKSNSKLGYV----VKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLC 408 (546)
Q Consensus 337 -~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~----~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~ 408 (546)
.+...+.+.|+ ++|...++.+.+..|..... +..++..+...|+ .++|...++.... .| +..+|..+..+|
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK-PVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 22444555666 66666666666666554422 2446666666674 4777777776542 33 456888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcccccC
Q 009025 409 VNLNLLENACKLLELGLTLEVYTD 432 (546)
Q Consensus 409 ~~~g~~~~A~~~~~~m~~~g~~p~ 432 (546)
.+.|++++|...|+++.+.. |+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~--p~ 338 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHN--EN 338 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--TT
T ss_pred HHcCCHHHHHHHHHHHHhcC--CC
Confidence 99999999999999887764 55
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.6e-17 Score=163.44 Aligned_cols=308 Identities=11% Similarity=0.015 Sum_probs=255.2
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
....+.+.|++++|+..|+.+.+... .+..++..+...|...|++++|+..|+++.+.. +-+...|..+..++...|+
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 33445589999999999999988643 378899999999999999999999999998864 3467899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSP----NWNTYASL------------LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p----~~~~~~~l------------l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 235 (546)
+++|...|+++.+. .| +...+..+ ...+...|++++|+++++++.+... .+...+..+...
T Consensus 87 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (359)
T 3ieg_A 87 LDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAEC 163 (359)
T ss_dssp HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 99999999999985 34 34444444 5788999999999999999988753 478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT------------SL 303 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~------------~l 303 (546)
+...|++++|...++++.... +.+..++..+...|...|++++|...|++..+.... +...+. .+
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 678899999999999999999999999999876432 334333 23
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCH-----HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhh
Q 009025 304 IQCYGKAQRTDDVVRALNRLPELGITPDD-----RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI 377 (546)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~ 377 (546)
...+.+.|++++|...|+++.+.. |+. ..+..+..++...|+ ++|...++.+.+..|....++..++..+..
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 667899999999999999998743 432 235567788999999 999999999999999988888999999999
Q ss_pred hcchHHHHHHHHHhccc-Ccc-chhhHHHHHHHHh
Q 009025 378 EGDFKKEATELFNSISK-DVK-KAYCNCLIDLCVN 410 (546)
Q Consensus 378 ~g~~~~~A~~~~~~~~~-~~~-~~~~~~li~~~~~ 410 (546)
.|+ .++|.+.|+.... .|+ ...+..+..+...
T Consensus 319 ~g~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 319 EEM-YDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 995 5999999988653 343 4466666655543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=2.4e-18 Score=179.68 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=70.5
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+.+.|++++|+..|+++.+... .++.+|..+..+|.+.|++++|++.|+++.+.. +.+..++..+..++...|
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcC
Confidence 334455588999999999999888643 378889999999999999999999999988765 446778888888888889
Q ss_pred ChhHHHHHHH
Q 009025 171 RPWQVKTIYK 180 (546)
Q Consensus 171 ~~~~a~~~~~ 180 (546)
++++|.+.|+
T Consensus 108 ~~~~A~~~~~ 117 (537)
T 3fp2_A 108 NFTDAMFDLS 117 (537)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9888888775
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.2e-17 Score=162.54 Aligned_cols=287 Identities=9% Similarity=-0.044 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44445555555555566666666666655442 2233344445555556666666666666655532 124455555556
Q ss_pred HHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 200 AYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 200 ~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
.|...| ++++|.+.|+++.+.... +...|..+...+...|++++|++.|+++.... +.+...+..+...|...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhhH
Confidence 666666 566666666665554321 34555566666666666666666666655543 33344555566666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--------CCCCHHHHHHHHHHHhcCCH-HH
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG--------ITPDDRFCGCLLNVMTQTPK-EE 349 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~t~~~ll~~~~~~g~-~~ 349 (546)
++|...|+++.+... .+...+..+...|...|++++|...|+++.+.. ...+..++..+..++...|+ ++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 666666666655432 245555666666666666666666666555321 02223455666666666666 66
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHH-HhcCC
Q 009025 350 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLC-VNLNL 413 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~-~~~g~ 413 (546)
|...++.+.+..|....++..++..+...|+ .++|.+.|++... .| +...+..+..++ ...|+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGN-FENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-HHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhcc-HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 6666666666666665666666666666663 3666666666432 22 344555566555 34444
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=3e-17 Score=159.57 Aligned_cols=280 Identities=9% Similarity=-0.004 Sum_probs=239.8
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-R 171 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~ 171 (546)
...+...|++++|+.+|+++.+... .+...+..++..+...|++++|..+++++.+.. +.+...|..+...+...| +
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhh
Confidence 3344477999999999999988643 366677788899999999999999999998864 346788999999999999 9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 251 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (546)
+++|.+.|++..+.. +.+...+..+..+|...|++++|++.|+++.+.... +...+..+...|...|++++|.+.|++
T Consensus 107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999864 335788999999999999999999999999887533 467778899999999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 252 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--------FEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 252 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
..... +.+...+..+...|...|++++|...|+++.+.. ...+...|..+...|...|++++|+..|++.
T Consensus 185 al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 185 ALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99876 6778999999999999999999999999988642 1334678999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhh-hhhc
Q 009025 324 PELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ-DIEG 379 (546)
Q Consensus 324 ~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~-~~~g 379 (546)
.+.. ..+...+..+..++...|+ ++|...++.+.+..|+....+..++.++ ...|
T Consensus 263 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 263 LVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTT
T ss_pred HhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhC
Confidence 8753 2256788899999999999 9999999999999999888888888776 3444
No 16
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=191.03 Aligned_cols=170 Identities=13% Similarity=0.156 Sum_probs=134.6
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA---IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 194 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 194 (546)
..-..+||+||.+|++.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456899999999999999999999988864 488999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 195 ASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 195 ~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
|+||+++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.+-++.+.++...+.-.....|...+...|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999998777654333333332222111111122445556777777
Q ss_pred hcCC---------HHHHHHHHHH
Q 009025 274 CRGK---------VSEAEAMFNE 287 (546)
Q Consensus 274 ~~g~---------~~~A~~~~~~ 287 (546)
+.+. .++-...|++
T Consensus 284 ~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 284 KDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCSCCCCCCCSSCHHHHHHHHHH
T ss_pred cCCCCcCccccCCHHHHHHHHHH
Confidence 6552 3555555554
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.7e-18 Score=169.87 Aligned_cols=282 Identities=13% Similarity=0.069 Sum_probs=140.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 7789999999999983 3459999999999999999999999653 577799999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
.++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877774 4567889999999999999999998885 267789999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 337 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 337 (546)
..|..|+.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. +.|+ -...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHH
Confidence 25899999999999999999999988 388999999999999999999976555432 3344 3557
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc-chHHHHHHHHHhccc-Cc------cchhhHHHHHHH
Q 009025 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-DFKKEATELFNSISK-DV------KKAYCNCLIDLC 408 (546)
Q Consensus 338 ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g-~~~~~A~~~~~~~~~-~~------~~~~~~~li~~~ 408 (546)
++..|.+.|. +++..+++.....++....+++-|+..|++-. +.+.+.+++|..-.. ++ +...|.-++-.|
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 8899999999 99999999999998888888888888888763 244566665544222 22 355899999999
Q ss_pred HhcCCHHHHHHHH
Q 009025 409 VNLNLLENACKLL 421 (546)
Q Consensus 409 ~~~g~~~~A~~~~ 421 (546)
.+.++++.|....
T Consensus 293 ~~~~e~d~A~~tm 305 (449)
T 1b89_A 293 DKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhchHHHHHHHH
Confidence 9999999987643
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=4.4e-17 Score=161.28 Aligned_cols=287 Identities=11% Similarity=0.017 Sum_probs=141.0
Q ss_pred cCCHHHHHH-HHHHHHhCCC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 99 AGNVEMAFG-LYDRARNEKW---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 99 ~g~~~~A~~-l~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
.|++++|+. .|+....... ..+...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 5554333211 1123345555555666666666666666665543 2344555555555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH---------------HHHHHHhc
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT---------------LLAMCADV 239 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~ 239 (546)
|.+.|+++.+.. +.+..++..+..+|...|++++|++.|+++...... +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666555542 224555555555666666666666666655554221 1111110 12222244
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
|++++|..+|+++.......++..++..+...|...|++++|...|+++.+... .+...|..+...|...|++++|+..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555444321001344445555555555555555555555444321 1344444445555555555555555
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc--
Q 009025 320 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-- 396 (546)
Q Consensus 320 ~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-- 396 (546)
|+++ .+..|....++..++..+...|+ .++|...|+.... .|
T Consensus 274 ~~~a----------------------------------l~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 274 YRRA----------------------------------LELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHH----------------------------------HHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTC
T ss_pred HHHH----------------------------------HHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence 5544 44444444444444555544442 2555555444321 11
Q ss_pred ----------cchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 397 ----------KKAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 397 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
...+|..+..+|.+.|+.++|..++++.
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1458899999999999999998887754
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=5.3e-17 Score=160.73 Aligned_cols=307 Identities=12% Similarity=-0.017 Sum_probs=181.1
Q ss_pred HHcCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009025 132 GTAGNFDGCLN-VYEEMKAIGV-KP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 207 (546)
Q Consensus 132 ~~~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 207 (546)
...|++++|++ .|++...... .| +...+..+...+.+.|++++|...|+++++.. +.+..++..+..+|.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34477777777 7765544311 11 23456677777888888888888888887764 33667777788888888888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
++|++.|+++.+... .+..++..+...|...|++++|.+.|+++.... +.+...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------------
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh-------
Confidence 888888888777642 367777778888888888888888888877654 2222222111000 00
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChh
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 365 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~ 365 (546)
.. .+ ...+. .+..+...|++++|+..|+++.+.... ++..++..+...+...|+ ++|...++.+.+..|...
T Consensus 178 ~~----~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 251 (368)
T 1fch_A 178 GA----GL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp -------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hh----cc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 00 00 00011 122222555666666666655543211 134555556666666666 666666666666666666
Q ss_pred HHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccccCc-------ccc
Q 009025 366 YVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI-------QSR 436 (546)
Q Consensus 366 ~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~ 436 (546)
..+..++..+...|+ .++|...|++... .| +..+|..+..+|.+.|++++|...|+++.+.. |+. ...
T Consensus 252 ~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~ 328 (368)
T 1fch_A 252 LLWNKLGATLANGNQ-SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC------CCCC
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCccccccch
Confidence 666777777777774 5888888887542 33 46689999999999999999999999998654 332 112
Q ss_pred Cccceeecccccch-hhHHHHHHHHHHHHH
Q 009025 437 SPTQWSLHLKSLSL-GAALTALHIWINDLS 465 (546)
Q Consensus 437 ~~~~~~~~l~~~~~-g~~~~a~~~~~~~~~ 465 (546)
....|..+...+.. |....|...+...+.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 24456555555544 555555544444443
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=7e-17 Score=159.87 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=165.4
Q ss_pred hhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 90 LKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 90 l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
+.....+.+.|++++|+..|+.+.+... .+..+|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..++...
T Consensus 69 ~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 3444455588888888888888887643 367788888888888888888888888887764 34577888888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPN-----------WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCA 237 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~ 237 (546)
|++++|.+.|+++.+.. |+ ...+..+...|.+.|++++|+++|+++.+.... .+..++..+...|.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 88888888888887642 21 223344567778888888888888888776422 15677888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
..|++++|++.|+++.+.. +.+..+|..+...|...|++++|...|+++.+... .+...|..+..+|.+.|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888877764 55677888888888888888888888888776532 24677778888888888888888
Q ss_pred HHHHHhhh
Q 009025 318 RALNRLPE 325 (546)
Q Consensus 318 ~~~~~m~~ 325 (546)
..|+++.+
T Consensus 302 ~~~~~al~ 309 (365)
T 4eqf_A 302 SNFLTALS 309 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
No 21
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=183.01 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009025 190 NWNTYASLLRAYGRARYGEDTLSVYREMK---EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 266 (546)
Q Consensus 190 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 266 (546)
-..|||+||++|++.|++++|.++|++|. ..|+.||++|||+||.+||+.|++++|.++|++|.+.|. .||.+||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-TPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHHHHH
Confidence 35689999999999999999999988776 357888999999999999999999999999999998885 89999999
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC------HHHHHHHH
Q 009025 267 SMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD------DRFCGCLL 339 (546)
Q Consensus 267 ~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~t~~~ll 339 (546)
+||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999998874 78889999999999999999999888766554 344444444 3344444 34555566
Q ss_pred HHHhcCC
Q 009025 340 NVMTQTP 346 (546)
Q Consensus 340 ~~~~~~g 346 (546)
+.+.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666544
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.2e-16 Score=158.17 Aligned_cols=278 Identities=12% Similarity=-0.032 Sum_probs=204.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999998764 4577889999999999999999999999998864 336888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC---------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQ---------LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
+|.+.|++++|+++|+++.+.... .....+..+...+...|++++|+++|+++........+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998875311 01223344577888889999999999998886521126888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-H
Q 009025 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-E 348 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~ 348 (546)
.|...|++++|.++|+++.+... .+..+|..+..+|.+.|++++|+..|+++.+. .| +..++..+..++...|+ +
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999998887643 36788888888999999999999999888874 34 36678888888888888 8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009025 349 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 423 (546)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (546)
+|...++.+.+..|.....- + . .....+..+|..|..++...|+.+.|..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~----------~-~----------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQ----------Q-V----------PHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC---------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCc----------c-c----------chhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88888877766544322100 0 0 00001345788889999999998888877665
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=8e-16 Score=160.41 Aligned_cols=301 Identities=11% Similarity=0.055 Sum_probs=243.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
....|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.++++++.. +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45677888899999999999999999999875 4578899999999999999999999999999864 347889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC------------------------------------CcCHH----------------
Q 009025 200 AYGRARYGEDTLSVYREMKEKGM------------------------------------QLSVT---------------- 227 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~------------------------------------~~~~~---------------- 227 (546)
+|.+.|++++|+..|+.+....- .|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999964311100 01100
Q ss_pred --------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcCCH
Q 009025 228 --------------LYNTLLAMCA--------DVGYTDEAFEIFEDMKSSENCQPD-------SWTFSSMITICSCRGKV 278 (546)
Q Consensus 228 --------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~~li~~~~~~g~~ 278 (546)
....+...+. ..|++++|..+|+++.+.. +.+ ..++..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 1111111111 1247899999999998764 333 33577778889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 357 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~ 357 (546)
++|...|+++.+.. |+...|..+...|...|++++|+..|+++.+.. ..+..++..+...+...|+ ++|...++.+
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999864 568889999999999999999999999998753 2357789999999999999 9999999999
Q ss_pred HHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 358 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 358 ~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.+..|.....+..++..+...|+ .++|...++.... .| +...|..+...|.+.|++++|...|+++.+..
T Consensus 337 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999988888999999999995 5999999988643 23 45689999999999999999999999998766
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=6.9e-16 Score=149.69 Aligned_cols=258 Identities=8% Similarity=-0.008 Sum_probs=187.0
Q ss_pred hhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 90 LKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 90 l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
+.....+.+.|++++|+.+|+++.+... .+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 3444555689999999999999988643 378889999999999999999999999998864 44778888999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASL--------------LR-AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------l~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
|++++|.+.++++.+.... +...+..+ .. .+...|++++|.++++++.+.... +...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 9999999999999886321 22222222 22 366777888888888887766432 6777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 314 (546)
.|...|++++|.++++++.... +.+..++..+...|...|++++|...|+++.+... .+...|..+...|...|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHH
Confidence 8888888888888888877764 55677788888888888888888888888776542 25677777788888888888
Q ss_pred HHHHHHHHhhhCCCCC-----------CHHHHHHHHHHHhcCCH-HHHHHHH
Q 009025 315 DVVRALNRLPELGITP-----------DDRFCGCLLNVMTQTPK-EELGKLV 354 (546)
Q Consensus 315 ~A~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~g~-~~a~~~~ 354 (546)
+|...|+++.+..... +..++..+..++...|+ ++|..++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888887776532111 23455555555555555 4444443
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=2.1e-15 Score=144.20 Aligned_cols=257 Identities=12% Similarity=0.124 Sum_probs=208.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..|++..|+..++................+.++|...|+++.|+..++.. -.|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 67999999999987765422222345667889999999999999877552 25677888999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.++++...+..| +...+..+..+|.+.|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999999876545 566777777999999999999999987 3578899999999999999999999999998864
Q ss_pred CCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009025 257 NCQPDSW-T--FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333 (546)
Q Consensus 257 ~~~~~~~-~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 333 (546)
|+.. . ...++..+...|++++|..+|+++.+.. ..+...|+.+..++.+.|++++|...|++..+.. .-+..
T Consensus 161 ---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 161 ---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 4422 1 1233455556699999999999999874 3578899999999999999999999999998743 22567
Q ss_pred HHHHHHHHHhcCCH-HH-HHHHHHHHHHcCCChhHHHH
Q 009025 334 FCGCLLNVMTQTPK-EE-LGKLVECVEKSNSKLGYVVK 369 (546)
Q Consensus 334 t~~~ll~~~~~~g~-~~-a~~~~~~~~~~~~~~~~~~~ 369 (546)
++..++..+...|+ ++ +.++++++.+.+|+...+.+
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 88889999999998 54 67899999999998877654
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.8e-15 Score=146.76 Aligned_cols=278 Identities=10% Similarity=-0.028 Sum_probs=201.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...+..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456677788889999999999999998764 3477888899999999999999999999998863 346788899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCCHHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL--------------LA-MCADVGYTDEAFEIFEDMKSSENCQPDSWT 264 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 264 (546)
.|...|++++|++.++++.+.... +...+..+ .. .+...|++++|.++++++.+.. +.+...
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHH
Confidence 999999999999999998876422 22223222 22 3667788888888888888765 557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 344 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 344 (546)
+..+...|...|++++|.++++++.+... .+...|..+...|...|++++|...|+++.+.. ..+..++..+..++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 88888888888888888888888887543 257778888888888888888888888887642 2245667777777777
Q ss_pred CCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009025 345 TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 423 (546)
Q Consensus 345 ~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (546)
.|+ ++|.+.++.+.+..|...... + . .....+...|..+..++.+.|+.++|..++++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~----------~-~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPT----------G-E----------ASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC--------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCCcccccc----------c-c----------chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 777 777777766655444311000 0 0 00000234677777777788888887777765
Q ss_pred HH
Q 009025 424 GL 425 (546)
Q Consensus 424 m~ 425 (546)
.+
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=2e-13 Score=140.85 Aligned_cols=306 Identities=14% Similarity=0.050 Sum_probs=210.2
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 009025 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AK 170 (546)
Q Consensus 99 ~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g 170 (546)
.+++++|...|+...+.| ++..+..|...|.. .+++++|++.|++..+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 678888888888877653 66777777777777 778888888888877754 55666677777776 67
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYT 242 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 242 (546)
++++|.+.|++..+.| +...+..|..+|.. .++.++|++.|++..+.| +...+..+...|.. .+++
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 7888888888877765 56667777777776 677888888888777764 56777777777776 7778
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChh
Q 009025 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTD 314 (546)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 314 (546)
++|+++|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.+
T Consensus 204 ~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 204 AISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 88888888777643 45566677777765 677777777777777643 45566666666666 67777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC-----CH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc--chHHHHH
Q 009025 315 DVVRALNRLPELGITPDDRFCGCLLNVMTQT-----PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG--DFKKEAT 386 (546)
Q Consensus 315 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g--~~~~~A~ 386 (546)
+|+..|++..+.| +...+..+...+... ++ ++|..+++...+.++. .....|+..|...| ...++|.
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA--TAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCcccHHHHH
Confidence 7777777776543 444555566666554 45 7777777776665432 33445555554432 1346777
Q ss_pred HHHHhcccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhcc
Q 009025 387 ELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLE 428 (546)
Q Consensus 387 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 428 (546)
+.|++.....+...+..|...|.. .+++++|...|++..+.|
T Consensus 352 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 352 EWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 777666555556667777777776 677777777777776655
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=2.9e-13 Score=139.64 Aligned_cols=306 Identities=13% Similarity=0.033 Sum_probs=261.9
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 009025 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AK 170 (546)
Q Consensus 99 ~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g 170 (546)
.++.++|+..|+...+.| ++..+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 789999999999998874 77888889999988 789999999999998875 67788888888887 78
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYT 242 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 242 (546)
+.++|.+.|++..+.| +...+..|..+|.. .++.++|.+.|++..+.| +...+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999999875 68889999999988 899999999999999875 67788888888887 8899
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCh
Q 009025 243 DEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA-----QRT 313 (546)
Q Consensus 243 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~ 313 (546)
++|.++|++..+.+ +...+..|...|.. .++.++|..+|++..+.| +...+..+...|... +++
T Consensus 240 ~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 99999999998754 56677888888888 899999999999998754 567788888888887 899
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC---H-HHHHHHHHHHHHcCCChhHHHHHHHHhhhh----hcchHHHH
Q 009025 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTP---K-EELGKLVECVEKSNSKLGYVVKLLLEEQDI----EGDFKKEA 385 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~----~g~~~~~A 385 (546)
++|+..|++..+.| +...+..+...+...| + ++|.++++...+.+ .......|+..|.. .+ ..++|
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~-~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKK-DEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC-CHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCC-CHHHH
Confidence 99999999999865 5567777777777766 5 89999999988764 34566778888776 55 45999
Q ss_pred HHHHHhcccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhccc
Q 009025 386 TELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLEV 429 (546)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 429 (546)
.+.|++.....+...+..|...|.+ .++.++|...|++..+.+.
T Consensus 387 ~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 387 AIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999988766677889999999998 8999999999999999884
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=3.7e-15 Score=142.45 Aligned_cols=273 Identities=9% Similarity=0.052 Sum_probs=208.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNM--ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
++-....|++..|+..++..... .|+. .....+..+|...|+++.|...++.. -.|+..++..+...|...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 34456679999999988876543 3443 35566788999999999998766541 3467788888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009025 206 YGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 284 (546)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999998876444 566777777899999999999999986 35778899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 009025 285 FNEMLEAGFEPNLFVL---TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS 360 (546)
Q Consensus 285 ~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~ 360 (546)
|+++.+.. |+.... ...+..+...|++++|+.+|+++.+. ...+...++.+..++.+.|+ ++|...++++.+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998864 443211 22334445568999999999999876 34567788889999999999 9999999999999
Q ss_pred CCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc-cCccchhhHHHHHHHHhcCCHHHHHH
Q 009025 361 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLENACK 419 (546)
Q Consensus 361 ~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~ 419 (546)
+|+...++..++..+...|+..+.+.++++++. ..|+.. .+.+...+.+.++++..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~---~~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP---FIKEYRAKENDFDRLVL 286 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHH
Confidence 998888888888888888866556778887654 344432 23444555555555544
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.6e-14 Score=133.40 Aligned_cols=225 Identities=9% Similarity=0.038 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPN----WNTYA 195 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~ 195 (546)
..|..+...+...|++++|+.+|+++.+.. .+..+|..+..++...|++++|.+.+++..+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555556666666666666655554 4555555556666666666666666655554211 011 35555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 275 (546)
.+...|.+.|++++|++.|+++.+.. |+. ..+...|++++|.+.++++.... +.+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHh
Confidence 55566666666666666666655542 221 23444455666666666655543 33445555566666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHH
Q 009025 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLV 354 (546)
Q Consensus 276 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~ 354 (546)
|++++|...|+++.+.... +...|..+...|...|++++|+..|++..+.. ..+...+..+..++...|+ ++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666666665554322 45555566666666666666666666655432 1234455555556666665 6666665
Q ss_pred HHHHHcC
Q 009025 355 ECVEKSN 361 (546)
Q Consensus 355 ~~~~~~~ 361 (546)
+...+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 5555544
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=7.3e-13 Score=138.04 Aligned_cols=324 Identities=13% Similarity=0.045 Sum_probs=225.9
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT-MGRAKRPWQV 175 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a 175 (546)
.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++... .|+...|...+.. ....|+.+.|
T Consensus 23 ~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhH
Confidence 57899999999999999863 347889999999999999999999999999886 4788787777753 3445666665
Q ss_pred HH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----
Q 009025 176 KT----IYKEMTD-NGLSP-NWNTYASLLRAYGR---------ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC---- 236 (546)
Q Consensus 176 ~~----~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~---- 236 (546)
.+ +|++.+. .|..| +...|...+....+ .|++++|..+|++..+.........|.......
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 54 6666654 35443 45667776666554 577888888888776631111112222211100
Q ss_pred ---------HhcCCHH------------------------------------------------------------HHHH
Q 009025 237 ---------ADVGYTD------------------------------------------------------------EAFE 247 (546)
Q Consensus 237 ---------~~~g~~~------------------------------------------------------------~A~~ 247 (546)
.+.++++ ++..
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 0011122 4445
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009025 248 IFEDMKSSENCQPDSWTFSSMITICSC-------RGKVS-------EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313 (546)
Q Consensus 248 ~~~~m~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 313 (546)
+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++
T Consensus 260 ~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 260 AYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 555555542 4456677777777765 68877 8899999888622223588899999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCH--HHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHh-hhhhcchHHHHHHHH
Q 009025 314 DDVVRALNRLPELGITPDD--RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE-QDIEGDFKKEATELF 389 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~-~~~~g~~~~~A~~~~ 389 (546)
++|..+|+++.+. .|+. ..|..++..+.+.|+ ++|.++|+...+..|.....+...+.. +...| ..++|..+|
T Consensus 338 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~-~~~~A~~~~ 414 (530)
T 2ooe_A 338 EKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK-DKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC-CHHHHHHHH
T ss_pred HHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC-ChhHHHHHH
Confidence 9999999999874 4542 478888888888888 999999999988776644333222211 22346 458999999
Q ss_pred Hhcc-cCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 390 NSIS-KDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 390 ~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+... ..| +...|..+++.+.+.|+.++|..+|++++..+
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 8653 233 46689999999999999999999999998764
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=7.6e-14 Score=130.19 Aligned_cols=218 Identities=10% Similarity=0.021 Sum_probs=189.1
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCC----HHHHHHHHHHH
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV--KPN----MITYNNLLDTM 166 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ll~~~ 166 (546)
...+.+.|++++|+..|+.+.+.. .+...|..+..+|...|++++|+..|++..+... .++ ..+|..+...+
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 344558999999999999999876 6889999999999999999999999999877521 122 57899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009025 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 246 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 246 (546)
...|++++|.+.|++..+. .|+. ..+.+.|++++|...++++.... +.+...+..+...+...|++++|+
T Consensus 90 ~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999985 3453 45667788999999999998864 225678889999999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 247 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 247 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+.|++..... +.+..+|..+...|...|++++|...|++..+... .+...|..+...|.+.|++++|...|++..+
T Consensus 160 ~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 160 KAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999876 56789999999999999999999999999998653 3588899999999999999999999999876
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=7.6e-15 Score=144.05 Aligned_cols=259 Identities=13% Similarity=0.118 Sum_probs=128.4
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++. .++..+.+.++.+|.+.|
T Consensus 37 ~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 37 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhC
Confidence 3444555999999999999653 48889999999999999999999988777764 466888999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.++
T Consensus 109 ~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 109 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 9999998884 367789999999999999999999999976 369999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 330 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 330 (546)
++ .++.+|..++.+|...|+++.|......+. .+......++..|.+.|++++|+.+++...... +-
T Consensus 173 KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~a 239 (449)
T 1b89_A 173 KA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RA 239 (449)
T ss_dssp HH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TC
T ss_pred Hc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HH
Confidence 88 267999999999999999999966655422 344445679999999999999999999988654 45
Q ss_pred CHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCC-----ChhHHHHHHHHhhhhhcchHHHHHH
Q 009025 331 DDRFCGCLLNVMTQTPK---EELGKLVECVEKSNS-----KLGYVVKLLLEEQDIEGDFKKEATE 387 (546)
Q Consensus 331 ~~~t~~~ll~~~~~~g~---~~a~~~~~~~~~~~~-----~~~~~~~~L~~~~~~~g~~~~~A~~ 387 (546)
....|+-+.-++++-.. .+..+.|..-....+ .....+.-+...|...++. +.|..
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~-d~A~~ 303 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-DNAII 303 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH-HHHHH
Confidence 66788888888888877 444444432222222 1123445555666666654 54444
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=2.1e-13 Score=128.53 Aligned_cols=248 Identities=8% Similarity=-0.006 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP--NWNTYASLLR 199 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~ 199 (546)
..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.+++..+.+..+ ...+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344556666777777777777777777653 2234466667777777777777777777777633111 2344677777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
.|...|++++|++.|++..+.... +..+|..+...|...|++++|++.|++..+.. +.+...|..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHH
Confidence 777778888888888777765432 55677777788888888888888888777664 556667777773333445888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCC-CCCC------HHHHHHHHHHHhcCCH-H
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR---TDDVVRALNRLPELG-ITPD------DRFCGCLLNVMTQTPK-E 348 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~t~~~ll~~~~~~g~-~ 348 (546)
+|.+.|+++.+.... +...+..+...+...|+ +++|...|++..+.. -.|+ ..++..+...+...|+ +
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 888888877765422 35666667777777777 777777777766421 1122 1456667777777777 8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHh
Q 009025 349 ELGKLVECVEKSNSKLGYVVKLLLEE 374 (546)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~L~~~ 374 (546)
+|...++++.+.+|+...+...+...
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 88888888887777766665555443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=1.3e-13 Score=125.61 Aligned_cols=198 Identities=17% Similarity=0.085 Sum_probs=112.0
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++.++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 355566666666666666666666666666553 3355566666666666666666666666666543 22455666666
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009025 199 RAYGRA-----------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267 (546)
Q Consensus 199 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 267 (546)
.+|.+. |++++|+..|++..+.... +...|..+...|...|++++|+..|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHH
Confidence 666666 6666666666666655322 45566666666666666666666666666543 45556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 268 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
+...|...|++++|...|++..+.... +...+..+...+.+.|++++|+..|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666654322 4555666666666666666666666554
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=5.7e-13 Score=136.49 Aligned_cols=326 Identities=13% Similarity=0.010 Sum_probs=210.0
Q ss_pred hhhcCCHHHHHHHHHHHHhC--------CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-C-CCCHHHHH
Q 009025 96 DTRAGNVEMAFGLYDRARNE--------KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-----G-V-KPNMITYN 160 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~-~p~~~~~~ 160 (546)
+...|+.++|++.|++..+. .-.....+|+.+..+|...|++++|...|++..+. + . .....+|.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 34789999999999887542 11235678999999999999999999999987642 1 1 12356777
Q ss_pred HHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009025 161 NLLDTMGRA--KRPWQVKTIYKEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 235 (546)
Q Consensus 161 ~ll~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 235 (546)
.+..++... +++++|++.|++.++... -+...+..+..+ +...++.++|++.+++..+.... +..++..+...
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~ 218 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHH
Confidence 776666554 568999999999988532 245555555444 44567888899999888876432 56666666655
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 009025 236 CAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA- 310 (546)
Q Consensus 236 ~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~- 310 (546)
+.. .|++++|.+++++..... +.+..++..+...|...|++++|...|++..+.... +...+..+..+|...
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHH
Confidence 554 457788999999888765 667888899999999999999999999998875432 455565555544321
Q ss_pred ------------------CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHH---H
Q 009025 311 ------------------QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV---V 368 (546)
Q Consensus 311 ------------------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~---~ 368 (546)
+..++|...|++..+.. ..+..++..+...+...|+ ++|...|++.....++.... .
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~ 374 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 23456666666665532 1123456667777777777 77888777777766654431 2
Q ss_pred HHHHHhh-hhhcchHHHHHHHHHhc-------------------------cc-CccchhhHHHHHHHHhcCCHHHHHHHH
Q 009025 369 KLLLEEQ-DIEGDFKKEATELFNSI-------------------------SK-DVKKAYCNCLIDLCVNLNLLENACKLL 421 (546)
Q Consensus 369 ~~L~~~~-~~~g~~~~~A~~~~~~~-------------------------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 421 (546)
..++..+ ...| ..++|+..|++. .. +.+..+|+.|..+|...|++++|++.|
T Consensus 375 ~~~~~~~~~~~~-~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 375 LRYGNFQLYQMK-CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2233222 2234 336666655432 11 224568999999999999999999999
Q ss_pred HHHHhcc
Q 009025 422 ELGLTLE 428 (546)
Q Consensus 422 ~~m~~~g 428 (546)
+++++.+
T Consensus 454 ~kALe~~ 460 (472)
T 4g1t_A 454 ERGLESG 460 (472)
T ss_dssp -------
T ss_pred HHHHhcC
Confidence 9998876
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=4.2e-13 Score=124.98 Aligned_cols=198 Identities=13% Similarity=0.031 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..+|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444455555555555555555555432 2244455555555555555555555555555432 124455555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
..|++++|+++|+++.+.+..| +...+..+...|...|++++|.++|+++.... +.+...+..+...|...|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554421122 33445555555555555555555555555443 33455555555555555666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..+|+++.+... .+...+..+...+...|++++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555554322 2444555555555555666666655555554
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=5e-13 Score=132.16 Aligned_cols=245 Identities=7% Similarity=0.051 Sum_probs=187.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
+...|+.+...+.+.|++++|+..|+++++.. +-+...|+.+..++...|+ +++|+..|++.++... -+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 34567778888888999999999999998864 3467788888999999996 9999999999988643 3678888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCC
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC-RGK 277 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~ 277 (546)
.+|.+.|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998887543 78888889999999999999999999988876 5678888888888888 566
Q ss_pred HHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCC---
Q 009025 278 VSEA-----EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ--RTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTP--- 346 (546)
Q Consensus 278 ~~~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g--- 346 (546)
.++| +..|++.+..... +...|+.+...+.+.| ++++|++.+.++ + ..| +...+..+..++.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccc
Confidence 5777 4778887775433 5677888888888877 578888888777 3 333 4456666777666653
Q ss_pred ------H-HHHHHHHHHH-HHcCCChhHHHHHHHH
Q 009025 347 ------K-EELGKLVECV-EKSNSKLGYVVKLLLE 373 (546)
Q Consensus 347 ------~-~~a~~~~~~~-~~~~~~~~~~~~~L~~ 373 (546)
. ++|.++++.+ .+.+|....++..++.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 2 5666677776 6666665555544443
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=7.8e-13 Score=120.47 Aligned_cols=210 Identities=8% Similarity=-0.062 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...|..+...+...|++++|++.|+++.+.. +.+...|..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 55677777888888888888888888877653 3456777788888888888888888888877753 236677778888
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 200 AYGRA-RYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 200 ~~~~~-g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
.|... |++++|+.+++++.+.+..| +...+..+...+...|++++|++.|+++.+.. +.+...+..+...|...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence 88888 88888888888877632222 35677777888888888888888888877754 4567778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 335 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 335 (546)
+++|..+|+++.+.....+...+..+...+...|+.++|..+++.+.+. .|+...+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 8888888888776543235666777777777888888888888777653 3544433
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=2.7e-12 Score=121.22 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTYA 195 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~ 195 (546)
++.++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3344444445555555555555555555442 233444444455555 555555555555555443 344445
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009025 196 SLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSS 267 (546)
Q Consensus 196 ~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 267 (546)
.+..+|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 55555555 555555555555555443 44445555555555 555555555555555432 3344444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009025 268 MITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTDDVVRALNRLPELGITPDDRFCGCLL 339 (546)
Q Consensus 268 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 339 (546)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 4455544 555555555555555432 33444445555555 555555555555555432 133444444
Q ss_pred HHHhc----CCH-HHHHHHHHHHHHcCC
Q 009025 340 NVMTQ----TPK-EELGKLVECVEKSNS 362 (546)
Q Consensus 340 ~~~~~----~g~-~~a~~~~~~~~~~~~ 362 (546)
..+.. .++ ++|.+.++...+.+|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 44444 444 555555555555554
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=3.8e-13 Score=125.25 Aligned_cols=197 Identities=11% Similarity=-0.019 Sum_probs=172.5
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
.....+...|++++|+..|+++.+.. +.+...+..+...|...|++++|++.|+++.+.. +.+...+..+...+...|
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh
Confidence 44455668999999999999998864 3378899999999999999999999999998874 347889999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
++++|.++++++.+.+..| +...+..+..+|.+.|++++|.+.|+++.+... .+...+..+...|...|++++|..+|
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998843344 567888899999999999999999999988753 36888999999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 292 (546)
+++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 199 ~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 199 DLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9998865 6778889999999999999999999999998854
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.8e-13 Score=124.72 Aligned_cols=195 Identities=14% Similarity=0.085 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
++...+..+...+.+.|++++|...|++.++.. +.+...+..+..+|.+.|++++|+..|++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 455566666666677777777777777666643 235566666666677777777777777766665322 456666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009025 234 AMCADV-----------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 302 (546)
Q Consensus 234 ~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 302 (546)
..+... |++++|+..|++..+.. +-+...+..+...|...|++++|...|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 666666 66666666666666543 3455566666666666666666666666666555 45666666
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 303 LIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 303 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
+..+|...|++++|+..|++..+. .| +...+..+..++...|+ ++|...++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666666666666666553 23 33444555555555555 445444443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=7.7e-12 Score=118.08 Aligned_cols=226 Identities=12% Similarity=0.037 Sum_probs=195.7
Q ss_pred CCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHH
Q 009025 82 PKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMI 157 (546)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 157 (546)
|.++.+...... .+.+.|++++|+..|+...+. -+..++..+...|.. .+++++|+..|++..+.+ +..
T Consensus 3 ~~~~~a~~~lg~-~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 3 EQDPKELVGLGA-KSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp --CHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCChHHHHHHHH-HHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 455555444443 344889999999999999984 367889999999999 999999999999999875 788
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHH
Q 009025 158 TYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLY 229 (546)
Q Consensus 158 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~ 229 (546)
.+..+...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 89999999999 999999999999999875 78899999999999 999999999999999876 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 230 NTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 230 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 888889988 999999999999998854 56788899999999 999999999999999864 377888
Q ss_pred HHHHHHHh----cCChhHHHHHHHHhhhCC
Q 009025 302 SLIQCYGK----AQRTDDVVRALNRLPELG 327 (546)
Q Consensus 302 ~li~~~~~----~g~~~~A~~~~~~m~~~~ 327 (546)
.+...|.+ .+++++|+..|++..+.|
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88899998 999999999999998765
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=9.3e-13 Score=130.22 Aligned_cols=247 Identities=11% Similarity=0.118 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY-GEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
...|+.+...+.+.|++++|++.+++.++.. +-+..+|+.+..+|.+.|+ +++|+..|+++.+.... +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4577888888999999999999999999864 2368899999999999997 99999999999987644 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK-AQRT 313 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~ 313 (546)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++++.... +...|+.+..+|.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999876 678999999999999999999999999999987654 78899999999998 6666
Q ss_pred hHH-----HHHHHHhhhCCCCC-CHHHHHHHHHHHhcCC--H-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc-----
Q 009025 314 DDV-----VRALNRLPELGITP-DDRFCGCLLNVMTQTP--K-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----- 379 (546)
Q Consensus 314 ~~A-----~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g--~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g----- 379 (546)
++| +..|++.++. .| +...|..+...+...| + +++...+..+ +.+|+...++..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 888 5888888874 45 4567888888888888 4 8888888887 788888888888888887763
Q ss_pred ---chHHHHHHHHHhc--ccCcc-chhhHHHHHHHHh
Q 009025 380 ---DFKKEATELFNSI--SKDVK-KAYCNCLIDLCVN 410 (546)
Q Consensus 380 ---~~~~~A~~~~~~~--~~~~~-~~~~~~li~~~~~ 410 (546)
+..++|.++++.+ ..+|. ...|..+...+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2458899999887 34454 3477766666543
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.7e-13 Score=129.34 Aligned_cols=223 Identities=8% Similarity=-0.065 Sum_probs=178.3
Q ss_pred hhcCCHHHHHHHHHHHHhCCC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009025 97 TRAGNVEMAFGLYDRARNEKW---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
...|++++|+..|+.+.+... +.+..+|..+...|...|++++|+..|+++.+.. +.+..+|..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 367899999999999998632 2256788999999999999999999999998874 346889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
+|.+.|+++++.. +.+..++..+..+|.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999863 2367889999999999999999999999998864 343344445555677799999999998877
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 254 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 254 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
... +++...+. ++..+...++.++|...+++..+..... +...|..+...|.+.|++++|...|++..+.
T Consensus 172 ~~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 754 44544444 7777788888899999998876532110 1467888888999999999999999998874
No 46
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1e-11 Score=129.28 Aligned_cols=330 Identities=11% Similarity=0.077 Sum_probs=233.1
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHH-HHcCChHHHHH----HHHHHHHC-CCCC-CHHHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLY-GTAGNFDGCLN----VYEEMKAI-GVKP-NMITYNNLL 163 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~ll 163 (546)
.......+.|++++|..+|+++... .|++..|...+... ...|++++|.+ +|+..... |..| +...|...+
T Consensus 51 ~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~ 128 (530)
T 2ooe_A 51 LYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYI 128 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3344555789999999999999987 46888888777533 45577776655 67666543 4443 456777777
Q ss_pred HHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----------------------------------
Q 009025 164 DTMGR---------AKRPWQVKTIYKEMTDNGLSPNWNTYASLLR----------------------------------- 199 (546)
Q Consensus 164 ~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----------------------------------- 199 (546)
....+ .|+++.|..+|++.++.........|.....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~ 208 (530)
T 2ooe_A 129 NFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVM 208 (530)
T ss_dssp HHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 66554 6778888888888776311111122221111
Q ss_pred ------------------------------HHHh----cCCh----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh---
Q 009025 200 ------------------------------AYGR----ARYG----EDTLSVYREMKEKGMQLSVTLYNTLLAMCAD--- 238 (546)
Q Consensus 200 ------------------------------~~~~----~g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--- 238 (546)
.... .++. ++|..+|++..... +-+...|..++..+.+
T Consensus 209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~ 287 (530)
T 2ooe_A 209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSK 287 (530)
T ss_dssp HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhch
Confidence 0000 0111 24445566555542 2356777777777775
Q ss_pred ----cCCHH-------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 009025 239 ----VGYTD-------EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQ 305 (546)
Q Consensus 239 ----~g~~~-------~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~ 305 (546)
.|+++ +|..+|++..+.- .+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++.
T Consensus 288 ~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 288 LLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMK 364 (530)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHH
T ss_pred hhhhccchhhhhhhhHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHH
Confidence 69987 9999999998632 1557889999999999999999999999999985 343 358999999
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH-HhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHH
Q 009025 306 CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV-MTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 383 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~ 383 (546)
.+.+.|++++|..+|++..+... .+...+...... +...|+ ++|.++|+...+..|+...++..++..+.+.|+ .+
T Consensus 365 ~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~-~~ 442 (530)
T 2ooe_A 365 FARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DN 442 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC-HH
T ss_pred HHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC-Hh
Confidence 99999999999999999987421 122333222222 234677 999999999999999888888888888888884 59
Q ss_pred HHHHHHHhcccC----cc--chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 384 EATELFNSISKD----VK--KAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 384 ~A~~~~~~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
+|..+|++.... |+ ...|...+....+.|+.+.+..+++++.+.-
T Consensus 443 ~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 443 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999986432 21 3389999999999999999999999987643
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=4.3e-13 Score=123.96 Aligned_cols=188 Identities=13% Similarity=0.148 Sum_probs=79.9
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 176 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 176 (546)
.+.|++++|+..|+++.+... .+...+..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp --------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHH
Confidence 355555555555555554321 244455555555555555555555555554432 223444444444444455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 177 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 177 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
+.++++.+.. +.+...+..+...|.+.|++++|+++++++.+... .+...+..+...+...|++++|++.|+++....
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5544444432 12334444444444444444444444444443321 133344444444444444444444444444332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 257 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 257 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+.+..++..+...|...|++++|.+.|+++.+
T Consensus 190 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 190 --PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp --TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 22333444444444444444444444444433
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=2.3e-12 Score=117.26 Aligned_cols=211 Identities=9% Similarity=-0.051 Sum_probs=172.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
+...|..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.++++++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 45678888899999999999999999998863 34678899999999999999999999999987643 36788999999
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009025 235 MCADV-GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 313 (546)
Q Consensus 235 ~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 313 (546)
.|... |++++|.++|+++...+..+.+...+..+...+...|++++|...|+++.+.... +...+..+...|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 99999 9999999999999883321334678889999999999999999999999876432 578889999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHH
Q 009025 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 368 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~ 368 (546)
++|...|+++.+.....+...+..+...+...|+ +++..+++.+.+..|+...+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999998875322456667777777777887 888888888877777665543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=6.7e-13 Score=122.65 Aligned_cols=203 Identities=11% Similarity=0.118 Sum_probs=142.6
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 197 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 197 (546)
......|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 4466677888888888888999988888888754 3467788888888888888888888888887753 2367788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
...|...|++++|.++++++.+... .+...+..+...+...|++++|.++++++.... +.+...+..+...|.+.|+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCC
Confidence 8888888888888888888877643 367778888888888888888888888887764 5567788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 278 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
+++|...|+++.+... .+...+..+...|...|++++|...|+++.+.
T Consensus 175 ~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888888888876543 35677788888888888888888888887763
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=6.4e-12 Score=118.26 Aligned_cols=233 Identities=11% Similarity=-0.026 Sum_probs=143.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--DSWTFSSMITI 271 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~ 271 (546)
+......+...|++++|+.+|+++.+.... +...+..+...|...|++++|++.|++....+. .+ ...+|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN-ATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-TTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-chhHHHHHHHHHHHH
Confidence 344555666666677777776666655322 344566666666677777777777776665321 11 13346666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH-HHHhcCCHHHH
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEEL 350 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~~~g~~~a 350 (546)
|...|++++|.+.|++..+.... +...|..+...|...|++++|+..|++..+.. .-+...+..+. ..+.....++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776664332 44566677777777777777777777766541 22344555555 34433322777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhhhcch--HHHHHHHHHhcc----cCcc------chhhHHHHHHHHhcCCHHHHH
Q 009025 351 GKLVECVEKSNSKLGYVVKLLLEEQDIEGDF--KKEATELFNSIS----KDVK------KAYCNCLIDLCVNLNLLENAC 418 (546)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~--~~~A~~~~~~~~----~~~~------~~~~~~li~~~~~~g~~~~A~ 418 (546)
...++.+.+..|.....+..++..+...|+. .++|...+++.. ..++ ..+|..+...|.+.|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777776665555566665555530 133333333321 1122 247888999999999999999
Q ss_pred HHHHHHHhcccccC
Q 009025 419 KLLELGLTLEVYTD 432 (546)
Q Consensus 419 ~~~~~m~~~g~~p~ 432 (546)
+.|+++.+.. |+
T Consensus 242 ~~~~~al~~~--p~ 253 (272)
T 3u4t_A 242 AAWKNILALD--PT 253 (272)
T ss_dssp HHHHHHHHHC--TT
T ss_pred HHHHHHHhcC--cc
Confidence 9999998765 66
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=3.3e-13 Score=127.33 Aligned_cols=186 Identities=8% Similarity=-0.075 Sum_probs=104.5
Q ss_pred HcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009025 133 TAGNFDGCLNVYEEMKAIGVK---PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 209 (546)
Q Consensus 133 ~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 209 (546)
..|++++|+..|+++.+.... .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 345666777777766654211 124456666666666666766666666666643 2245666666666666666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
|++.|+++.+... .+..++..+...|...|++++|.+.|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666666665432 245566666666666666666666666666542 322233333334455566666666665555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 290 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.... ++...+ .++..+...++.++|+..+.+..+
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhc
Confidence 4321 222222 244445555555666666555543
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=3.4e-11 Score=123.21 Aligned_cols=321 Identities=11% Similarity=0.061 Sum_probs=228.7
Q ss_pred CHHHHHHHHHHHHh-CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCC
Q 009025 101 NVEMAFGLYDRARN-EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--------GVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 101 ~~~~A~~l~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~ll~~~~~~g~ 171 (546)
.++...+.+....+ .+.......||.|...+...|++++|++.|++..+. .-.....+|+.+..+|...|+
T Consensus 30 ~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~ 109 (472)
T 4g1t_A 30 SLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR 109 (472)
T ss_dssp CHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC
Confidence 34444433333322 233445678999999999999999999999987542 112346789999999999999
Q ss_pred hhHHHHHHHHHHHC-----C-CC-CCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCcCHHHHHHHHHH---HHhc
Q 009025 172 PWQVKTIYKEMTDN-----G-LS-PNWNTYASLLRAYGRA--RYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADV 239 (546)
Q Consensus 172 ~~~a~~~~~~m~~~-----g-~~-p~~~~~~~ll~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~ 239 (546)
+++|...+++..+. + .. ....++..+..++.+. +++++|++.|++..+.... +...+..+..+ +...
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 99999999887652 1 11 2356676666666554 5789999999999887432 45556555544 4556
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 315 (546)
++.++|++.+++..+.. +.+..++..+...+.. .|++++|.+++++...... .+...+..+...|...|++++
T Consensus 189 ~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp CCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHH
Confidence 88889999999988765 5677777777666554 4678899999999887654 367889999999999999999
Q ss_pred HHHHHHHhhhCCCCCC-HHHHHHHHHHHhcC-------------------CH-HHHHHHHHHHHHcCCChhHHHHHHHHh
Q 009025 316 VVRALNRLPELGITPD-DRFCGCLLNVMTQT-------------------PK-EELGKLVECVEKSNSKLGYVVKLLLEE 374 (546)
Q Consensus 316 A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~-------------------g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~ 374 (546)
|+..|++..+. .|+ ..++..+..++... +. ++|...++...+.+|.....+..++..
T Consensus 266 A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 266 AIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHH
Confidence 99999999874 454 44555555544321 12 567778888888899888888889999
Q ss_pred hhhhcchHHHHHHHHHhcc-cCccch----hhHHHHHH-HHhcCCHHHHHHHHHHHHhcc
Q 009025 375 QDIEGDFKKEATELFNSIS-KDVKKA----YCNCLIDL-CVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 375 ~~~~g~~~~~A~~~~~~~~-~~~~~~----~~~~li~~-~~~~g~~~~A~~~~~~m~~~g 428 (546)
+...|+ .++|++.|++.. ..++.. .+..+... +.+.|+.++|+..|++.++..
T Consensus 344 ~~~~~~-~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 344 HALADQ-YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHTTC-HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred HHHhcc-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999995 599999998753 222221 33444433 457899999999999987654
No 53
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.50 E-value=3e-11 Score=131.96 Aligned_cols=285 Identities=15% Similarity=0.094 Sum_probs=174.7
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 175 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 175 (546)
+...|.+++|..+|++... .....+.++. ..|++++|.+++++. -+..+|..+..++.+.|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 3467888888888877521 2222222222 556666666666643 2345666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 176 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
.+.|.+. -|...|.-++.+|.+.|++++|.++|....+.. ++....+.++.+|++.+++++...+. .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 6666442 255566666666666666666666666555443 22222334666666666665433221 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---------
Q 009025 256 ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL--------- 326 (546)
Q Consensus 256 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------- 326 (546)
.++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|++.+++....
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 1259 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334445555666666666666666666553 24555666666666666665555443211
Q ss_pred ---------------CCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc-chHHHHHHHH
Q 009025 327 ---------------GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-DFKKEATELF 389 (546)
Q Consensus 327 ---------------~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g-~~~~~A~~~~ 389 (546)
++..+...+..++..|.+.|. ++|..+++.....++....+++-|+..|++-. +.+.++.++|
T Consensus 1260 cve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 123355566788888999999 99999999998888877778888887777652 2345555555
Q ss_pred Hhccc-Cc------cchhhHHHHHHHHhcCCHHHHHH
Q 009025 390 NSISK-DV------KKAYCNCLIDLCVNLNLLENACK 419 (546)
Q Consensus 390 ~~~~~-~~------~~~~~~~li~~~~~~g~~~~A~~ 419 (546)
..-.. ++ +...|.-++-.|.+.|+++.|..
T Consensus 1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 54322 21 34579999999999999999973
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=1.3e-12 Score=131.22 Aligned_cols=279 Identities=12% Similarity=-0.006 Sum_probs=190.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCC
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GL-SPN 190 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~p~ 190 (546)
....+..+...+...|++++|+..|+++.+.+. .+. .+|..+...+...|++++|...+++.++. +. ...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 455666777889999999999999999988642 233 47888889999999999999999988653 11 123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCcCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEK----G-MQLSVTLYNTLLAMCADVGY-----------------TDEAFEI 248 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 248 (546)
..++..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 467788888899999999999999887653 1 11234577888888888898 8888888
Q ss_pred HHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHH
Q 009025 249 FEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PN----LFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 249 ~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
+++.... +.......++..+...|...|++++|...|++..+.... .+ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8876542 110112346777888888888888888888887763111 12 22667777788888888888888
Q ss_pred HHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcc
Q 009025 320 LNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 393 (546)
Q Consensus 320 ~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~ 393 (546)
|++..+... ..+ ..++..+...+...|+ ++|...++..... .....
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------------------~~~~~ 337 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI----------------------------AQELG 337 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------HHHCC
Confidence 877764210 011 2344445555555555 5555444433221 11111
Q ss_pred cC-ccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 394 KD-VKKAYCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 394 ~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
.. ....++..+..+|.+.|++++|.+.|++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 11337788999999999999999999998654
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=6.1e-13 Score=133.00 Aligned_cols=265 Identities=14% Similarity=0.072 Sum_probs=161.1
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRID----PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKP-NMITYNN 161 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ 161 (546)
.....+.+.|++++|+..|+++.+.+.. + ..+|..+...|...|++++|...|++..+. +-.| ...++..
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3344455778888888888888775322 3 356777778888888888888888776432 1111 2346677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGL-SPN----WNTYASLLRAYGRARY--------------------GEDTLSVYRE 216 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~ 216 (546)
+...+...|++++|...+++..+... ..+ ..++..+...|...|+ +++|++.+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 77778888888888887777665310 011 3466777777777777 7777777776
Q ss_pred HHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 217 MKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 217 m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
..+. +..+ ...++..+...|...|++++|++.|++......-.++ ..++..+...|...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5432 1111 1345667777777778888887777776543110112 23666777777777777777777777
Q ss_pred HHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 288 MLEAGFE-PN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 288 m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
..+.... .+ ..++..+...|...|++++|...|++..+... ..+ ..++..+...+...|+ ++|...+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542110 11 44566677777777777777777776653210 011 2344445555555555 555554444
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=4.4e-12 Score=129.86 Aligned_cols=210 Identities=5% Similarity=-0.056 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009025 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 215 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 215 (546)
+++++..+++..... +.+...+..+..++...|++ ++|++.|++.++.. +.+...|..+..+|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444443321 22444455555555555555 55555555554432 1134455555555555555555555555
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--------CCH
Q 009025 216 EMKEKGMQLSVTLYNTLLAMCADV---------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR--------GKV 278 (546)
Q Consensus 216 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--------g~~ 278 (546)
+..+.. |+...+..+...|... |++++|++.|++..+.. +.+...|..+..+|... |++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 554432 3344455555555555 55555555555555443 33445555555555555 555
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHH
Q 009025 279 SEAEAMFNEMLEAGFE--PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKL 353 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~ 353 (546)
++|.+.|++..+.... -+...|..+..+|...|++++|+..|++..+.. .-+...+..+..++...|+ ++|...
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555543210 144455555555555555555555555554421 1122344444444444444 444443
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=5.9e-11 Score=114.28 Aligned_cols=218 Identities=16% Similarity=0.150 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 103 EMAFGLYDRARNEKWRIDPNAFSTLIKLYGT-------AGNF-------DGCLNVYEEMKAIGVKPNMITYNNLLDTMGR 168 (546)
Q Consensus 103 ~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 168 (546)
++|..+|+++.... +-++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999998753 3378889888888764 5876 8899999999873113356688889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHH
Q 009025 169 AKRPWQVKTIYKEMTDNGLSPN-WN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA-DVGYTDEA 245 (546)
Q Consensus 169 ~g~~~~a~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A 245 (546)
.|++++|.++|++.++. .|+ .. +|..+...+.+.|++++|.++|++..+... .+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999884 343 33 788888888889999999999999887643 24455544433322 36899999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEP--NLFVLTSLIQCYGKAQRTDDVVRALNR 322 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 322 (546)
.++|++..+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999887764 4577888888888888999999999999988853 344 467788888888888999999988888
Q ss_pred hhhC
Q 009025 323 LPEL 326 (546)
Q Consensus 323 m~~~ 326 (546)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=2.2e-11 Score=121.12 Aligned_cols=230 Identities=8% Similarity=-0.052 Sum_probs=125.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----CHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-----DSWTFSSM 268 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~l 268 (546)
..+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|+..+++..+...-.+ ...++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444555555555555555432 1011 123455555555555555555555555443210011 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCC-CHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEMLEAGFE-PN----LFVLTSLIQCYGKAQRTDDVVRALNRLPEL----GITP-DDRFCGCL 338 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~l 338 (546)
...|...|++++|...|++..+.... .+ ..++..+...|...|++++|+..|++..+. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 55555556666665555554431000 11 124555555556666666666665555431 1112 23445555
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHc-----CCChhHHHHHHHHhhhhhcc--hHHHHHHHHHhcccCcc-chhhHHHHHHHH
Q 009025 339 LNVMTQTPK-EELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGD--FKKEATELFNSISKDVK-KAYCNCLIDLCV 409 (546)
Q Consensus 339 l~~~~~~g~-~~a~~~~~~~~~~-----~~~~~~~~~~L~~~~~~~g~--~~~~A~~~~~~~~~~~~-~~~~~~li~~~~ 409 (546)
...+.+.|+ ++|...+++..+. ++.....+..++..+...|+ ..++|..++++....++ ...+..|...|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 555666665 6666655555442 22222234556777766663 26888888888755433 347788999999
Q ss_pred hcCCHHHHHHHHHHHHhcc
Q 009025 410 NLNLLENACKLLELGLTLE 428 (546)
Q Consensus 410 ~~g~~~~A~~~~~~m~~~g 428 (546)
+.|++++|...|++..+..
T Consensus 351 ~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987543
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=1.3e-10 Score=111.82 Aligned_cols=222 Identities=11% Similarity=0.066 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMG-------RAKRP-------WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203 (546)
Q Consensus 138 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 203 (546)
++|+.+|+++.... +-+...|..++..+. +.|++ ++|..+|++.++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999998763 457778888887775 35886 8999999999983123366789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGKVSEA 281 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~-~~g~~~~A 281 (546)
.|++++|.++|+++.+.... +.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999985322 333 89999999999999999999999999875 455556655444432 36999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCC--CHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 009025 282 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-ITP--DDRFCGCLLNVMTQTPK-EELGKLVECV 357 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~t~~~ll~~~~~~g~-~~a~~~~~~~ 357 (546)
.++|++..+... -+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++....+.|+ +++..+++.+
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999987543 267889999999999999999999999999863 455 35678888888888888 8888888888
Q ss_pred HHcCCCh
Q 009025 358 EKSNSKL 364 (546)
Q Consensus 358 ~~~~~~~ 364 (546)
.+..|+.
T Consensus 268 ~~~~p~~ 274 (308)
T 2ond_A 268 FTAFREE 274 (308)
T ss_dssp HHHTTTT
T ss_pred HHHcccc
Confidence 8877753
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=2.8e-11 Score=106.71 Aligned_cols=166 Identities=18% Similarity=0.154 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
++.+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 55667777777777777777777777776653 23556666777777777777777777777665432 24556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
.+...++++.|...+.+...... -+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHH
Confidence 66677777777777776665532 255666666677777777777777777666654 455666666777777777777
Q ss_pred HHHHHHHHHHH
Q 009025 280 EAEAMFNEMLE 290 (546)
Q Consensus 280 ~A~~~~~~m~~ 290 (546)
+|.+.|++.++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776665
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.2e-12 Score=131.43 Aligned_cols=273 Identities=15% Similarity=0.061 Sum_probs=207.2
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhCCCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GV-KPNMITYNN 161 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~ 161 (546)
.....+.+.|++++|+..|+++.+.+.. +. ..|..+...|...|++++|+..|++..+. +- .....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4445566899999999999999986433 33 57889999999999999999999988653 11 223467888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDN----GL-SPNWNTYASLLRAYGRARY-----------------GEDTLSVYREMKE 219 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~ll~~~~~~g~-----------------~~~A~~~~~~m~~ 219 (546)
+...+...|++++|...+++..+. +- .....++..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999988763 11 1134578888999999999 9999999887654
Q ss_pred c----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 220 K----GM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 220 ~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
. +. .....++..+...|...|++++|++.|++..+...-..+ ..++..+...|...|++++|...|++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11 112457888899999999999999999998754210112 23788999999999999999999998875
Q ss_pred cCCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 291 AGFE-P----NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 291 ~~~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
.... . ...++..+...|...|++++|...|++..+... ..+ ..++..+..++...|+ ++|...++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3111 1 146788899999999999999999998875210 011 2467778888888888 888888888776
Q ss_pred cCCCh
Q 009025 360 SNSKL 364 (546)
Q Consensus 360 ~~~~~ 364 (546)
..+..
T Consensus 372 ~~~~~ 376 (411)
T 4a1s_A 372 LAXXX 376 (411)
T ss_dssp HCCHH
T ss_pred HHhhc
Confidence 55543
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=3.8e-11 Score=105.88 Aligned_cols=166 Identities=12% Similarity=0.092 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
+..+|..+...+.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56788888889999999999999999888764 236788888888899999999999998888776433 6777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 314 (546)
.+...++++.|.+.+++..... +.+...+..+...|.+.|++++|.+.|++..+.... +...|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 8888899999999998888765 567788888888899999999999999888876533 6778888888889999999
Q ss_pred HHHHHHHHhhh
Q 009025 315 DVVRALNRLPE 325 (546)
Q Consensus 315 ~A~~~~~~m~~ 325 (546)
+|+..|++.++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988876
No 63
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.43 E-value=2.8e-10 Score=124.47 Aligned_cols=292 Identities=12% Similarity=0.098 Sum_probs=185.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 6677888888777552 5777888888888888888888888553 366677778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 257 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 257 (546)
.|...++.. ++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 887766643 23333334677777777666433322 1 224455555666666666666666666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------CCCCCHHHHHHHHHHHHhcCCh
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA------------------------GFEPNLFVLTSLIQCYGKAQRT 313 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------~~~p~~~~~~~li~~~~~~g~~ 313 (546)
..|..+...|.+.|++++|.+.+++.... ++..+...+..++..|.+.|.+
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH
Confidence 24666666666666666666655443210 1123555677888899999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCC-----ChhHHHHHHHHhhhhhcchHHHH
Q 009025 314 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK---EELGKLVECVEKSNS-----KLGYVVKLLLEEQDIEGDFKKEA 385 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---~~a~~~~~~~~~~~~-----~~~~~~~~L~~~~~~~g~~~~~A 385 (546)
++|+.+++...... .-....|.-+...+++... .++.++|..-....+ .....+.-+...|.+.|+. +.|
T Consensus 1297 eEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~-dnA 1374 (1630)
T 1xi4_A 1297 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-DNA 1374 (1630)
T ss_pred HHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccH-HHH
Confidence 99999998876533 2234567777777777766 566666665444333 2344566777777777754 666
Q ss_pred HHHH-------------Hh-cccCccchhhHHHHHHHHhcC---------------CHHHHHHHHH
Q 009025 386 TELF-------------NS-ISKDVKKAYCNCLIDLCVNLN---------------LLENACKLLE 422 (546)
Q Consensus 386 ~~~~-------------~~-~~~~~~~~~~~~li~~~~~~g---------------~~~~A~~~~~ 422 (546)
...+ .. +....+...|.-.+..|...+ +.+++.++|.
T Consensus 1375 ~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1375 IITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 5221 11 112334556666666666655 7777777776
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=5.4e-12 Score=126.07 Aligned_cols=281 Identities=11% Similarity=0.025 Sum_probs=186.7
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP 189 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p 189 (546)
......+......+...|++++|+..|+++.+.. +.+ ..+|..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4466677788888899999999999999988763 223 357788888899999999999998887543 2111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCC--------------------HH
Q 009025 190 -NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNTLLAMCADVGY--------------------TD 243 (546)
Q Consensus 190 -~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~ 243 (546)
...++..+...|...|++++|+..+++..+.... .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456777888888899999999988877653110 12 3477778888888888 88
Q ss_pred HHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChh
Q 009025 244 EAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPN----LFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 244 ~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~ 314 (546)
+|.+.+++.... +.......++..+...|...|++++|...|++..+... .++ ...+..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888876542 11011234677778888888888888888887764211 112 236677777788888888
Q ss_pred HHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHH
Q 009025 315 DVVRALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 388 (546)
Q Consensus 315 ~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~ 388 (546)
+|...|++..+... ..+ ..++..+...+...|+ ++|...++...+.
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---------------------------- 296 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---------------------------- 296 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----------------------------
Confidence 88888877663210 011 2344455555555555 5555444432221
Q ss_pred HHhcccCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 389 FNSISKDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 389 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
.......+ ...++..+..+|.+.|++++|...+++..+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11111111 1347788889999999999999999987654
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=5.6e-12 Score=122.06 Aligned_cols=278 Identities=12% Similarity=0.031 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NW 191 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~ 191 (546)
...+......+...|++++|+..|+++.+.. +.+ ...|..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455566777888899999999999988763 223 357778888888899999999888887543 1111 24
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGM-QLS----VTLYNTLLAMCADVGY--------------------TDEAF 246 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 246 (546)
.++..+...|...|++++|...+++..+... ..+ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5677778888888888888888887664311 012 3367777788888888 88888
Q ss_pred HHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHH
Q 009025 247 EIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PN----LFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 247 ~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~ 317 (546)
+.+++.... +.......++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888776532 110112346677777788888888888888877653110 11 225666777777778888887
Q ss_pred HHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHh
Q 009025 318 RALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 391 (546)
Q Consensus 318 ~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~ 391 (546)
..+++..+... ..+ ..++..+...+...|+ ++|...++..... ...
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----------------------------~~~ 295 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI----------------------------AQE 295 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------------------HHh
Confidence 77777653110 011 2234444444445544 4444444332211 111
Q ss_pred cccCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009025 392 ISKDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTL 427 (546)
Q Consensus 392 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 427 (546)
....+ ...++..+...|.+.|++++|...++++.+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11111 1337788999999999999999999998764
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=3.9e-12 Score=123.20 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=196.2
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRID----PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKP-NMITYNNLL 163 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll 163 (546)
...+.+.|++++|+..|+++.+.... + ...+..+...|...|++++|++.+++..+. +..+ ...++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34455899999999999999886432 3 467889999999999999999999987543 2111 245788889
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 009025 164 DTMGRAKRPWQVKTIYKEMTDNGL-SPN----WNTYASLLRAYGRARY--------------------GEDTLSVYREMK 218 (546)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~m~ 218 (546)
..+...|++++|...+++..+... ..+ ..++..+...|...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999988765311 112 3478888899999999 999999998765
Q ss_pred Hc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 219 EK----GMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP----DSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 219 ~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
.. +.. ....++..+...+...|++++|.+.+++..+...-.+ ...++..+...|...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 111 1245788888999999999999999998765311011 23478889999999999999999999887
Q ss_pred HcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 009025 290 EAGFE-PN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-EELGKLVECVE 358 (546)
Q Consensus 290 ~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~-~~a~~~~~~~~ 358 (546)
+.... .+ ..++..+...|...|++++|...+++..+... ..+ ..++..+...+...|+ ++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 53111 12 55778889999999999999999998864210 011 2345566666666666 66666666655
Q ss_pred Hc
Q 009025 359 KS 360 (546)
Q Consensus 359 ~~ 360 (546)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.39 E-value=4.7e-11 Score=121.44 Aligned_cols=313 Identities=11% Similarity=0.022 Sum_probs=165.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF---DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK---- 170 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---- 170 (546)
+.|++++|+.+|+...+.| ++..+..|...|...|+. ++|+..|++..+. +...+..|...+...+
T Consensus 15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 5566666666666655543 333444444445555555 5566666555532 3334444444333333
Q ss_pred -ChhHHHHHHHHHHHCCCCC--------------------------------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009025 171 -RPWQVKTIYKEMTDNGLSP--------------------------------NWNTYASLLRAYGRARYGEDTLSVYREM 217 (546)
Q Consensus 171 -~~~~a~~~~~~m~~~g~~p--------------------------------~~~~~~~ll~~~~~~g~~~~A~~~~~~m 217 (546)
++++|.+.|++..+.|... +......|...|...+.++++......+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 4555666666555544221 1222333334444444332222221111
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHH
Q 009025 218 KEKGMQLSVTLYNTLLAMCADVG---YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR----GKVSEAEAMFNEMLE 290 (546)
Q Consensus 218 ~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~ 290 (546)
.+.-...+...+..|...|...| +.++|++.|++..+.| .++...+..|..+|... +++++|.++|++..
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 11111113336667777777777 7777888888777776 56666666677766554 67778888887766
Q ss_pred cCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC----CH-HHHHHHHHHHHHcCC
Q 009025 291 AGFEPNLFVLTSLIQC-Y--GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT----PK-EELGKLVECVEKSNS 362 (546)
Q Consensus 291 ~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----g~-~~a~~~~~~~~~~~~ 362 (546)
. -+...+..|... | ...+++++|+..|++..+.| +...+..|...|... .+ ++|.++|+... +
T Consensus 245 ~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~ 315 (452)
T 3e4b_A 245 P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---G 315 (452)
T ss_dssp G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---T
T ss_pred C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---C
Confidence 3 244555555555 3 45777888888888777665 555666666666532 14 77777777766 4
Q ss_pred ChhHHHHHHHHhhhhh---cchHHHHHHHHHhcccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhccc
Q 009025 363 KLGYVVKLLLEEQDIE---GDFKKEATELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLEV 429 (546)
Q Consensus 363 ~~~~~~~~L~~~~~~~---g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 429 (546)
........|+..|... ....++|...|+......+...+..|...|.. ..+.++|..+|++..+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4445556666666541 11347777777776665566666677777664 3577788888887777663
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.3e-11 Score=118.30 Aligned_cols=234 Identities=12% Similarity=0.057 Sum_probs=144.3
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhC-------CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC-CCCH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNE-------KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------GV-KPNM 156 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~ 156 (546)
.....+...|++++|+.+|+++.+. .......++..+...|...|++++|+..|+++.+. +- ....
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 3444555888899999888888762 22335567788888888888888888888887654 11 2234
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCC
Q 009025 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN------GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEK------GMQ 223 (546)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~~ 223 (546)
.++..+...+...|++++|.+.++++.+. +..| ...++..+...|...|++++|+++|+++.+. +..
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56777888888888888888888887763 1112 3456777778888888888888888877654 112
Q ss_pred c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 224 L-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------NCQPD-------SWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 224 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
| ...++..+...|...|++++|.++|+++.... ...+. ...+..+...+...+.+.++...+....
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 2 34567777788888888888888888876521 00111 1112222333344445555555555555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 290 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 290 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
... ..+..++..+..+|.+.|++++|...|++..+
T Consensus 272 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 272 VDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 321 12345667777777777777777777777654
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.38 E-value=1.5e-11 Score=125.20 Aligned_cols=280 Identities=15% Similarity=0.081 Sum_probs=176.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP---WQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.+...+.+.|++++|+++|++..+.| +...+..|...+...|+. ++|.+.|++..+. +...+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677788999999999999998876 334455666777778888 8999999998864 5566677777555
Q ss_pred hcC-----ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-----------------------------------cCC-
Q 009025 203 RAR-----YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD-----------------------------------VGY- 241 (546)
Q Consensus 203 ~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-----------------------------------~g~- 241 (546)
..+ +.++|++.|++..+.|... .+..|...|.. .+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 555 7789999999988876432 33333333333 332
Q ss_pred ---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----C
Q 009025 242 ---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----Q 311 (546)
Q Consensus 242 ---~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g 311 (546)
.+++..+++.... + .|+ .+..|...|...| +.++|.+.|++..+.|. ++...+..|...|... +
T Consensus 158 ~~~~~~a~~~~~~a~~-~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 158 DQHLDDVERICKAALN-T--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGHHHHHHHHHHHTT-T--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSC
T ss_pred ccCHHHHHHHHHHHHc-C--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCC
Confidence 2333333333332 2 233 7788888888889 88999999999888774 3566556677777554 7
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHH-H--hcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc----chHH
Q 009025 312 RTDDVVRALNRLPELGITPDDRFCGCLLNV-M--TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKK 383 (546)
Q Consensus 312 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~--~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g----~~~~ 383 (546)
++++|+..|++.. .| +...+..+... + ...++ ++|.+++++..+.+ .......|+.+|. .| ...+
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 8999999999887 32 44455555555 3 34555 99999999887665 3445566777766 33 1458
Q ss_pred HHHHHHHhcccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhccc
Q 009025 384 EATELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLEV 429 (546)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 429 (546)
+|...|++.. ..+...+..|...|.. ..+.++|..+|++..+.|.
T Consensus 305 ~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 305 AAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9999998887 6677788888887776 3489999999999887763
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=5.8e-11 Score=121.52 Aligned_cols=212 Identities=7% Similarity=-0.080 Sum_probs=182.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
++++.+.+++..... +.+...+..+..+|...|++ ++|++.|++..+.... +...|..+...|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777766543 34788999999999999999 9999999999887533 68899999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCh
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCR---------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA--------QRT 313 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~ 313 (546)
+..+. .|+...+..+...|... |++++|.+.|++..+.... +...|..+..+|... |++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 99986 46788999999999999 9999999999999986543 688899999999988 999
Q ss_pred hHHHHHHHHhhhCCCCC----CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHH
Q 009025 314 DDVVRALNRLPELGITP----DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 388 (546)
Q Consensus 314 ~~A~~~~~~m~~~~~~p----~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~ 388 (546)
++|+..|++..+. .| +...+..+..++...|+ ++|...+++..+.+|+....+..++..+...| ..++|.+.
T Consensus 238 ~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg-~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS-RLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999874 35 67889999999999999 99999999999999998888888888888777 45788776
Q ss_pred HHhc
Q 009025 389 FNSI 392 (546)
Q Consensus 389 ~~~~ 392 (546)
+..+
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6655
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=2.3e-10 Score=113.52 Aligned_cols=227 Identities=9% Similarity=-0.019 Sum_probs=132.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-Cc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----CHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGM-QL----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-----DSWTFSSM 268 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~l 268 (546)
..+...|++++|+..|++..+... .+ ...++..+...|...|++++|...+++......-.+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344556666666666666553210 01 134555566666666666666666665543210011 13355566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----CCCCCCHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE-----LGITPDDRFCGCL 338 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~l 338 (546)
...|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|+..|++..+ .. .....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 66666666666666666665532 1000 123455566666666666666666666654 21 1124456666
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHc-----CCChhHHHHHHHHhhhhhcc--hHHHHHHHHHhcccCcc-chhhHHHHHHHH
Q 009025 339 LNVMTQTPK-EELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGD--FKKEATELFNSISKDVK-KAYCNCLIDLCV 409 (546)
Q Consensus 339 l~~~~~~g~-~~a~~~~~~~~~~-----~~~~~~~~~~L~~~~~~~g~--~~~~A~~~~~~~~~~~~-~~~~~~li~~~~ 409 (546)
...+.+.|+ ++|...+++..+. ++.....+..+...+...++ ..++|...++.....++ ...+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 666666666 6666666666553 23333344556556555552 25788888887554333 336778999999
Q ss_pred hcCCHHHHHHHHHHHHh
Q 009025 410 NLNLLENACKLLELGLT 426 (546)
Q Consensus 410 ~~g~~~~A~~~~~~m~~ 426 (546)
+.|++++|...|+++.+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998864
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=3.2e-11 Score=115.59 Aligned_cols=197 Identities=15% Similarity=0.102 Sum_probs=132.9
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhC------C-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHH
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNE------K-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------GVKP-NMI 157 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~ 157 (546)
....+...|++++|+..|+++... + ......++..+...|...|++++|+..|+++.+. +-.| ...
T Consensus 75 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 334455789999999999988763 1 1234567888889999999999999999988764 2122 345
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CC
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN------GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKG-------MQ 223 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-------~~ 223 (546)
++..+...+...|++++|.++++++.+. +..| ...++..+..+|.+.|++++|.+.|+++.+.. ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6788888899999999999999988764 2122 34578888899999999999999999887531 11
Q ss_pred c-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 224 L-------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 224 ~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+ ....+..+...+...+.+.++...++...... +.+..++..+...|.+.|++++|.++|++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11223333444455566667777777766543 44667788899999999999999999988775
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=2.3e-10 Score=113.79 Aligned_cols=295 Identities=9% Similarity=-0.023 Sum_probs=203.7
Q ss_pred chhhhcCCHHHHHHHHHHHHhC--CCccC--HHHHHHHHHHH--HHcCChHHHH-----------HHHHHHHHCCCCCCH
Q 009025 94 SYDTRAGNVEMAFGLYDRARNE--KWRID--PNAFSTLIKLY--GTAGNFDGCL-----------NVYEEMKAIGVKPNM 156 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~--g~~~~--~~~~~~li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~p~~ 156 (546)
-.+.+.+++++|..+++++.+. ....| ...|-.++..- ...++++.+. ++++.+.... .+.
T Consensus 20 ~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~ 97 (383)
T 3ulq_A 20 YMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARL 97 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCc
Confidence 3445899999999999998763 22233 33444444321 2223444444 6666665421 111
Q ss_pred H------HHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-
Q 009025 157 I------TYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKG--M- 222 (546)
Q Consensus 157 ~------~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~- 222 (546)
. .+......+...|++++|...|++..+. +-.+ ...++..+...|...|++++|+..+++..+.- .
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 1 1223556678899999999999999874 1111 24678899999999999999999999887531 1
Q ss_pred ---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 009025 223 ---QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEA---- 291 (546)
Q Consensus 223 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 291 (546)
.....+++.+...|...|++++|++.|++..+...-..+ ..++..+...|...|++++|.+.|++..+.
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 112467888999999999999999999987753210112 347889999999999999999999998862
Q ss_pred CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC---CCC-HHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCC
Q 009025 292 GF-EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI---TPD-DRFCGCLLNVMTQTPK----EELGKLVECVEKSNS 362 (546)
Q Consensus 292 ~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~t~~~ll~~~~~~g~----~~a~~~~~~~~~~~~ 362 (546)
+. .....++..+...|.+.|++++|...|++..+... .|. ...+..+...+...|+ ++|..+++.. ...+
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~ 336 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA 336 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH
Confidence 22 23467789999999999999999999998875210 111 2335667777778774 5555555544 2222
Q ss_pred ChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 363 KLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 363 ~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
....+...++..|...|+ .++|.+.++..
T Consensus 337 ~~~~~~~~la~~y~~~g~-~~~A~~~~~~a 365 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKN-FQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
Confidence 333456788999999995 49999888764
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=3.5e-10 Score=99.07 Aligned_cols=164 Identities=12% Similarity=0.050 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 201 (546)
..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555556666666666666666655442 2345555556666666666666666666655542 22445555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 202 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++++.... +.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 55566666666665555442 2244555555555555555555555555555443 33445555555555555555555
Q ss_pred HHHHHHHHH
Q 009025 282 EAMFNEMLE 290 (546)
Q Consensus 282 ~~~~~~m~~ 290 (546)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=3.2e-09 Score=104.90 Aligned_cols=274 Identities=8% Similarity=-0.065 Sum_probs=166.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI----TYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPN----WNTYAS 196 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ 196 (546)
.....+...|++++|...+++........+.. +++.+...+...|++++|.+.+++...... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566788888888887776653222222 455666677777888888887777654210 012 233566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C-CCHHHHH
Q 009025 197 LLRAYGRARYGEDTLSVYREMKEK----GMQ--L-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--Q-PDSWTFS 266 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~-~~~~~~~ 266 (546)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++......- . ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 677788888888888888876642 211 2 2345666777888888888888888887653210 1 1235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH-----HHHHHHHhcCChhHHHHHHHHhhhCCCCCC---HHHHHH
Q 009025 267 SMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLT-----SLIQCYGKAQRTDDVVRALNRLPELGITPD---DRFCGC 337 (546)
Q Consensus 267 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ 337 (546)
.+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++..+....+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 788888888999999998888765321111 11121 233447788999999999888875332111 223455
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccc-hhhHHHHHHHHhcCCHH
Q 009025 338 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK-AYCNCLIDLCVNLNLLE 415 (546)
Q Consensus 338 ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~ 415 (546)
+...+...|+ ++|...++...... .......+. ..+..+..++...|+.+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENA----------------------------RSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 5566666666 66666555433211 111100111 24555667777888888
Q ss_pred HHHHHHHHHHhc
Q 009025 416 NACKLLELGLTL 427 (546)
Q Consensus 416 ~A~~~~~~m~~~ 427 (546)
+|...+++....
T Consensus 311 ~A~~~l~~al~~ 322 (373)
T 1hz4_A 311 DAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777644
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=5.1e-10 Score=98.00 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009025 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 236 (546)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 236 (546)
..|..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|.++++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677788888899999999888887653 3467788888888888999999999998887764 33677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 009025 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 316 (546)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 316 (546)
...|++++|.++|+++.... +.+...+..+...+...|++++|..+|+++.+... .+...+..+...|...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 88899999999998888765 56778888888888888999999998888887643 3577888888888888888888
Q ss_pred HHHHHHhhh
Q 009025 317 VRALNRLPE 325 (546)
Q Consensus 317 ~~~~~~m~~ 325 (546)
...+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=3.5e-10 Score=120.72 Aligned_cols=166 Identities=10% Similarity=0.132 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
++.+|+.|..+|.+.|++++|++.|++..+.. +-+..+|+.+..++.+.|++++|++.|++.++.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56788899999999999999999999988764 3357788889999999999999999999988853 235788899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
+|.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.. +-+...|..+...|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998876433 67889999999999999999999999988865 557888899999999999999
Q ss_pred HHHHHHHHHHH
Q 009025 280 EAEAMFNEMLE 290 (546)
Q Consensus 280 ~A~~~~~~m~~ 290 (546)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887765
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=5.1e-10 Score=119.43 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 155 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
+..+|+.|..++.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 35689999999999999999999999999863 236889999999999999999999999999987533 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 314 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 314 (546)
+|.+.|++++|++.|++..+.. +-+...|..+...|...|++++|++.|++.++.... +...|..+..+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999875 567899999999999999999999999999986533 5788999999999999999
Q ss_pred HHHHHHHHhhh
Q 009025 315 DVVRALNRLPE 325 (546)
Q Consensus 315 ~A~~~~~~m~~ 325 (546)
+|.+.|++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=2.8e-09 Score=97.33 Aligned_cols=202 Identities=13% Similarity=0.066 Sum_probs=140.3
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
.|+..+..+...+.+.|++++|+..|++..+....++...+..+..++...|++++|.+.+++.++... .+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 356777778888888888888888888887765336777777788888888888888888888887532 2566778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSV-------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--DSWTFSSMI 269 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li 269 (546)
.+|.+.|++++|++.|++..+.... +. ..|..+...+...|++++|++.|++..+.. +. +...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 8888888888888888888776322 34 457777778888888888888888888753 33 356677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009025 270 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334 (546)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 334 (546)
..|...|+ .+++++...+. .+...|.... ....+.+++|+..|++..+. .|+...
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 77755443 34455444322 2344444333 23346678888888888873 455443
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=2.9e-09 Score=105.17 Aligned_cols=265 Identities=12% Similarity=-0.049 Sum_probs=186.0
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHH
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPN----AFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM----ITYNNLLDT 165 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~ 165 (546)
.+...|++++|...+++........+.. +++.+...+...|++++|...+++..+... ..+. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4447899999999999988754333332 567777888999999999999998865310 1222 346677888
Q ss_pred HHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----cCHHHHHHHHH
Q 009025 166 MGRAKRPWQVKTIYKEMTDN----GLS--P-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ----LSVTLYNTLLA 234 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~ 234 (546)
+...|++++|...+++..+. +.. | ....+..+...|...|++++|...+++....... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999888653 222 2 2456677888999999999999999988764221 12467888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCC-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHH
Q 009025 235 MCADVGYTDEAFEIFEDMKSSENCQPD-SWTFS----SMITICSCRGKVSEAEAMFNEMLEAGFEP---NLFVLTSLIQC 306 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~ 306 (546)
.+...|++++|...+++.........+ ..... ..+..+...|++++|..++++.......+ ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 999999999999999998754210111 11111 23445789999999999999887543221 13356778889
Q ss_pred HHhcCChhHHHHHHHHhhhC----CCCCCH-HHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 307 YGKAQRTDDVVRALNRLPEL----GITPDD-RFCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~----~~~p~~-~t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
+...|++++|...+++..+. |..++. .++..+..++...|+ ++|...++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999987642 211122 244455556666666 666666665443
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=2.7e-09 Score=97.41 Aligned_cols=208 Identities=9% Similarity=-0.023 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
.|...+......+...|++++|...|++.++....++...+..+..+|.+.|++++|++.|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4668888899999999999999999999998754367888888999999999999999999999987533 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSENCQPDS-------WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLTSL 303 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l 303 (546)
..|...|++++|++.|++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999998865 4455 56888889999999999999999999874 455 4567777
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHh
Q 009025 304 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 374 (546)
Q Consensus 304 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~ 374 (546)
..+|...| ..+++++...+ ..+...|..... ...+. ++|...+++..+..|+...+...+...
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77776544 34455555432 223444443332 23344 899999999999999988877777654
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=1.8e-10 Score=108.49 Aligned_cols=224 Identities=12% Similarity=0.074 Sum_probs=150.3
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChh
Q 009025 101 NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------GVKP-NMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~ 173 (546)
.+++|+++++.+..........++..+...|...|++++|+..|+++.+. +-.| ...++..+...+...|+++
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence 35566666665554333445778899999999999999999999998754 2122 3557888999999999999
Q ss_pred HHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCcCHHHHHHHHHHHHhc
Q 009025 174 QVKTIYKEMTDN------GL-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEK------G-MQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 174 ~a~~~~~~m~~~------g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~ 239 (546)
+|.+.+++..+. .. +....++..+...|...|++++|+.+|+++.+. + .+....++..+...|...
T Consensus 103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 999999988764 11 223567888888999999999999999988764 1 122356788888899999
Q ss_pred CCHHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHH
Q 009025 240 GYTDEAFEIFEDMKSS-------ENCQPDSWTFSSMITICSCRGKVSEAEA------MFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
|++++|.++|++.... .........|..+...+...+....+.. .++.... .......++..+...
T Consensus 183 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~ 261 (283)
T 3edt_B 183 GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGAL 261 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 9999999999888753 1102223334444444443333322222 2211110 011124567778888
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 009025 307 YGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~ 325 (546)
|...|++++|..+|++..+
T Consensus 262 ~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 262 YRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2.2e-10 Score=107.95 Aligned_cols=198 Identities=15% Similarity=0.095 Sum_probs=139.6
Q ss_pred hccchhhhcCCHHHHHHHHHHHHhC------C-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------C-CCCCH
Q 009025 91 KEKSYDTRAGNVEMAFGLYDRARNE------K-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------G-VKPNM 156 (546)
Q Consensus 91 ~~~~~~~~~g~~~~A~~l~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~p~~ 156 (546)
.....+...|++++|+..|+++.+. + ......++..+...|...|++++|++.|++..+. . .+...
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3445556899999999999998764 2 1234568899999999999999999999998764 1 12235
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CC
Q 009025 157 ITYNNLLDTMGRAKRPWQVKTIYKEMTDN------GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEK-------GM 222 (546)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------g~ 222 (546)
.+|..+...+...|++++|...+++..+. +..| ...++..+..+|.+.|++++|..+|++..+. ..
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV 207 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 68888999999999999999999999875 1122 3567889999999999999999999998763 11
Q ss_pred Cc-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 223 QL-SVTLYNTLLAMCADVGY------TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 223 ~~-~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+ ....|..+...+...+. +..+...++...... +....++..+...|...|++++|..+|++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS--PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 22333333333333333 333333333332211 23456788899999999999999999998875
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=2.5e-09 Score=106.04 Aligned_cols=224 Identities=9% Similarity=0.006 Sum_probs=103.0
Q ss_pred hhcCCHHHHHHHHHHHHhCCC-cc----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--C---CC-CHHHHHHHHHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKW-RI----DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--V---KP-NMITYNNLLDT 165 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~p-~~~~~~~ll~~ 165 (546)
...|++++|+..|+.+.+.-. .+ ...++..+...|...|+++.|+..+++..+.. . .+ ...+++.+..+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 355666666666665544210 01 13345555555666666666665555554320 0 00 12345555555
Q ss_pred HHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCcCHHHHHHHHHH
Q 009025 166 MGRAKRPWQVKTIYKEMTDN----GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKE-----KGMQLSVTLYNTLLAM 235 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~li~~ 235 (546)
+...|++++|.+.|++.++. +..+ ...++..+..+|...|++++|++.|++..+ .. +....++..+...
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~ 270 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWT 270 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHH
Confidence 55566666665555554431 1000 123444555555555555555555555544 21 1124445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 009025 236 CADVGYTDEAFEIFEDMKSSENC---QPDSWTFSSMITICSCRGK---VSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYG 308 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 308 (546)
|.+.|++++|...+++......- +.....+..+...|...|+ +.+|..++++. +..++ ...+..+...|.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHH
Confidence 55555555555555554432110 1112233344444444444 44444444431 11111 223344555555
Q ss_pred hcCChhHHHHHHHHhh
Q 009025 309 KAQRTDDVVRALNRLP 324 (546)
Q Consensus 309 ~~g~~~~A~~~~~~m~ 324 (546)
..|++++|...|++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555443
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=3.1e-09 Score=101.29 Aligned_cols=160 Identities=13% Similarity=-0.041 Sum_probs=73.5
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHH
Q 009025 130 LYGTAGNFDGCLNVYEEMKAI----GVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN----WNTYASLLR 199 (546)
Q Consensus 130 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~ 199 (546)
.|...|++++|++.|++..+. |-.++ ..+|+.+..+|.+.|++++|+..|++.++.... .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666655432 21111 345556666666666666666666555432100 01 234444555
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH-----HHHHHH
Q 009025 200 AYGRA-RYGEDTLSVYREMKEKGMQL-S----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS-----WTFSSM 268 (546)
Q Consensus 200 ~~~~~-g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~~l 268 (546)
+|... |++++|+..|++..+..... + ..+++.+...|.+.|++++|+..|++......-.+.. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555444321000 0 2234444555555555555555555544432101110 133444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~ 289 (546)
..++...|++++|...|++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555555443
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=2.8e-09 Score=101.63 Aligned_cols=212 Identities=12% Similarity=0.109 Sum_probs=146.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 009025 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSPN-WNTYASLLRAYGRARYGEDT 210 (546)
Q Consensus 136 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A 210 (546)
++++|.+.|++. ...+...|++++|.+.|.+..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34577889999999999887653 32111 46888999999999999999
Q ss_pred HHHHHHHHHc----CCCc-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 009025 211 LSVYREMKEK----GMQL-SVTLYNTLLAMCADV-GYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSE 280 (546)
Q Consensus 211 ~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 280 (546)
+..|++..+. |-.. -..+++.+...|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999887653 2110 135788888899986 9999999999987763210111 3568888999999999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH------HHHHHHHHHh--cCC
Q 009025 281 AEAMFNEMLEAGFEPNL------FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR------FCGCLLNVMT--QTP 346 (546)
Q Consensus 281 A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------t~~~ll~~~~--~~g 346 (546)
|...|++..+....... ..|..+..++...|++++|+..|++..+ +.|+.. .+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999998875433222 2567778888899999999999999876 334321 2334444553 223
Q ss_pred H-HHHHHHHHHHHHcCCCh
Q 009025 347 K-EELGKLVECVEKSNSKL 364 (546)
Q Consensus 347 ~-~~a~~~~~~~~~~~~~~ 364 (546)
. ++|.+.|+.+.+.+|..
T Consensus 255 ~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHhccCCccHHHH
Confidence 3 55555555554444433
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=1.3e-08 Score=83.55 Aligned_cols=128 Identities=17% Similarity=0.156 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
+..+...|...|++++|.++|+++.+.+. .+...+..+...+...|++++|..+|+++...+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 34444555555555555555555544322 234445555555555555555555555555443 334445555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..|++++|.++|+++.+... .+...+..+...|.+.|++++|...|+++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555554322 2344555555555555566666555555543
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=4.3e-09 Score=112.58 Aligned_cols=170 Identities=6% Similarity=-0.102 Sum_probs=82.8
Q ss_pred hcCCHHHHHHHHHHHH--------hCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009025 98 RAGNVEMAFGLYDRAR--------NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 169 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 169 (546)
..|++++|++.|++.. +.. +.+...|..+..+|.+.|++++|++.|+++.+.. +-+...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 4555555555555554 221 1234455555555555555555555555555432 22344555555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
|++++|.+.|++.++... -+...+..+..+|.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555554321 134445555555555555555 5555555544322 3445555555555555555555555
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHh
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSC 274 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~ 274 (546)
++..+.. +-+...+..+..++..
T Consensus 558 ~~al~l~--P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPPTS--RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCTTS--TTHHHHHHHHHHHTC-
T ss_pred HhhcccC--cccHHHHHHHHHHHHc
Confidence 5554432 2223444444444433
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=2.2e-08 Score=82.16 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 202 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 202 (546)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++...+ +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34455555555555555555555555432 2234445555555555555555555555554432 123444444444555
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
+.|++++|.++++++.+... .+...+..+...+...|++++|.+.|+++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555555555554444321 133444444444444444444444444443
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=5.5e-08 Score=91.45 Aligned_cols=247 Identities=9% Similarity=-0.006 Sum_probs=170.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
-.|.+..++.-. .+.........-.-+.++|...|++.... .-.|....+..+.. |...+ ++.
T Consensus 25 y~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~ 87 (310)
T 3mv2_B 25 YTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIE 87 (310)
T ss_dssp TTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCH
T ss_pred HhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHH
Confidence 568888887733 32221223334445668888888876421 12345444443333 33322 677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 256 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 256 (546)
.|++..+.+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~- 165 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA- 165 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 788877665 45666777888999999999999999999877653 236778888999999999999999999999874
Q ss_pred CCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-
Q 009025 257 NCQP-----DSWTFSSMITIC--SCRG--KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL- 326 (546)
Q Consensus 257 ~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 326 (546)
.| +..+...|..++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56 356666666663 3334 8999999999987643 55444445555899999999999999876642
Q ss_pred ----CC---CC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHH
Q 009025 327 ----GI---TP-DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVV 368 (546)
Q Consensus 327 ----~~---~p-~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~~~~~~~~~ 368 (546)
.. .| |..++..++......|+ ++.+++.++.+..|+...+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL-DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHHHHhCCCChHHH
Confidence 11 24 44566566666666665 78899999999998877654
No 91
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.98 E-value=6.4e-07 Score=94.51 Aligned_cols=137 Identities=8% Similarity=0.068 Sum_probs=87.9
Q ss_pred cCCCChhhhhhhccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCC
Q 009025 80 VNPKSPRASKLKEKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN---FDGCLNVYEEMKAIG-VKPN 155 (546)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~ 155 (546)
.+|.+... .+..+....+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+..+|++..... ..|+
T Consensus 61 ~np~d~~~-W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s 138 (679)
T 4e6h_A 61 EQPTDIFL-YVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND 138 (679)
T ss_dssp HCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred HCcCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC
Confidence 44544332 234444555678899999999999876 34577788888888888888 999999999988763 1378
Q ss_pred HHHHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh---------cCChHHHHHHHH
Q 009025 156 MITYNNLLDTMGRAKRP--------WQVKTIYKEMTD-NGL-SPN-WNTYASLLRAYGR---------ARYGEDTLSVYR 215 (546)
Q Consensus 156 ~~~~~~ll~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~g~~~~A~~~~~ 215 (546)
+..|...+.-..+.++. +.+.++|+..+. .|. .++ ...|...+..... .++++.+.++|+
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 88888877766555543 334577777554 465 443 4566666654432 233455666665
Q ss_pred HHH
Q 009025 216 EMK 218 (546)
Q Consensus 216 ~m~ 218 (546)
+++
T Consensus 219 raL 221 (679)
T 4e6h_A 219 TLL 221 (679)
T ss_dssp HHT
T ss_pred HHH
Confidence 554
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=4.7e-08 Score=91.88 Aligned_cols=184 Identities=10% Similarity=-0.001 Sum_probs=109.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009025 140 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYREMK 218 (546)
Q Consensus 140 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 218 (546)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665544 45555555666677777777777777777665543 1245666677777777777777777777776
Q ss_pred HcCCCc-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 219 EKGMQL-----SVTLYNTLLAMC--ADVG--YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 219 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
+. .| +..+...|+.++ ...| ++.+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65 33 234444455442 2223 677777777776553 3443333444446777777777777777655
Q ss_pred HcC-----C----CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009025 290 EAG-----F----EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333 (546)
Q Consensus 290 ~~~-----~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 333 (546)
+.. . .-|..+...+|......|+ +|.+++.++.+. .|+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 320 0 1245555455555555565 667777777763 45543
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=3.6e-08 Score=92.03 Aligned_cols=62 Identities=8% Similarity=0.082 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 009025 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCR----------GKVSEAEAMFNEMLEA 291 (546)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 291 (546)
..+...|.+.|++++|+..|+++.+...-.+ ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4456666777777777777777665431011 234555666666654 6667777777776654
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=6.3e-07 Score=84.99 Aligned_cols=214 Identities=7% Similarity=-0.010 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG--YTDEAFEIFEDMKSSENCQPDSWTFSSMITIC----SCR---GKV 278 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~----~~~---g~~ 278 (546)
++|+++++.++..+.. +..+|+.--..+...| ++++++++++.+.... +-+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4566666655554322 3445555555555555 6666666666665543 33444444332222 333 556
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC-------HHH
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD--DVVRALNRLPELGITPDDRFCGCLLNVMTQTP-------KEE 349 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-------~~~ 349 (546)
++++++++++.+...+ |...|+.-...+.+.|.++ ++++.++++++.... |...|+.-...+...+ -++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666666655433 5566665555555556665 666666666654322 4444444444444333 267
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhccc-----CccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 350 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-----DVKKAYCNCLIDLCVNLNLLENACKLLELG 424 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 424 (546)
+.+.++.++..+|....+++.+...+.+.|...+++.++.+++.. ..+...+..++++|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777888888888888888877777776666555556666666432 224568889999999999999999999998
Q ss_pred Hh
Q 009025 425 LT 426 (546)
Q Consensus 425 ~~ 426 (546)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=4.2e-08 Score=88.20 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 121 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+..+......+.+.|++++|+..|++..+. .|+.. .|... ...... .........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~~~--------------~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDKNS--------------EISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCTTS--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcchh--------------hhhHHHHHHHHH
Confidence 344445556667778888888888777764 23322 22210 000000 001122334677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-- 277 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-- 277 (546)
+|.+.|++++|+..|++..+.... +...|..+...|...|++++|+..|++..+.. +-+..+|..+...|...|+
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHH
Confidence 777888888888888887776432 67777778888888888888888888877765 5567777777777765543
Q ss_pred HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009025 278 VSEAEAMFNEMLEAGFEPNLF--VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 334 (546)
Q Consensus 278 ~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 334 (546)
.+.+...++.... |+.. .+..+..++...|++++|+..|++.++ +.|+...
T Consensus 140 ~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 192 (208)
T 3urz_A 140 KKKLETDYKKLSS----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEA 192 (208)
T ss_dssp HHHHHHHHC---C----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHH
T ss_pred HHHHHHHHHHHhC----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHH
Confidence 3344555555432 3332 333445555667788888888887776 4566543
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=1.4e-07 Score=85.02 Aligned_cols=176 Identities=14% Similarity=0.039 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 009025 104 MAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK----RPWQVKTIY 179 (546)
Q Consensus 104 ~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~ 179 (546)
+|++.|+...+.| ++.++..|...|...+++++|+..|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677766653 67777777777777888888888888877754 55666667776666 5 777788877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 009025 180 KEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCAD----VGYTDEAFEIFE 250 (546)
Q Consensus 180 ~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 250 (546)
++..+.| +...+..|..+|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|+++|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7777654 56667777777766 67777777777777766521 015666777777776 667777777777
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 009025 251 DMKSSENCQPDSWTFSSMITICSCR-G-----KVSEAEAMFNEMLEAG 292 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 292 (546)
+..+.+ .+...+..|..+|... | +.++|..+|++..+.|
T Consensus 154 ~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 776642 2334566666666543 2 6777777777776654
No 97
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.94 E-value=1.6e-06 Score=91.50 Aligned_cols=326 Identities=10% Similarity=0.061 Sum_probs=215.4
Q ss_pred hcCC---HHHHHHHHHHHHhCC-CccCHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHH-CCC-CCC-HHHHHHH
Q 009025 98 RAGN---VEMAFGLYDRARNEK-WRIDPNAFSTLIKLYGTAGNF--------DGCLNVYEEMKA-IGV-KPN-MITYNNL 162 (546)
Q Consensus 98 ~~g~---~~~A~~l~~~~~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~l 162 (546)
+.|. ++.+..+|++..... ..|++..|...+....+.++. +...++|+.... .|. .++ ...|...
T Consensus 112 ~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 112 DKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEY 191 (679)
T ss_dssp TC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred hhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 5677 999999999999863 137899999988877666554 334577877654 365 454 5678777
Q ss_pred HHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHH---HHHHHHH----------hcCCh-------------
Q 009025 163 LDTMGR---------AKRPWQVKTIYKEMTDNGLSPNWNTYA---SLLRAYG----------RARYG------------- 207 (546)
Q Consensus 163 l~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~----------~~g~~------------- 207 (546)
+.-... .++++.+.++|++.+......-..+|. .+...+. ...++
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 765432 334667788888877531111112221 1111000 00001
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 208 ------------------------------------------------------EDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 208 ------------------------------------------------------~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
+.+..+|++.... ++-+...|-..+
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya 350 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMA 350 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHH
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 1122334444333 122455566666
Q ss_pred HHHHhcCCHHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC-------
Q 009025 234 AMCADVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF---------EPN------- 296 (546)
Q Consensus 234 ~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------- 296 (546)
..+...|+.++|. ++|++.... ++.+...|...+...-+.|++++|.++|+++++... .|+
T Consensus 351 ~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 351 NYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 6677788888896 999998864 366777788889999999999999999999886310 132
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHhcC-CH-HHHHHHHHHHHHcCCChhHHH
Q 009025 297 -----LFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDRFCGCLLNVMTQT-PK-EELGKLVECVEKSNSKLGYVV 368 (546)
Q Consensus 297 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~-g~-~~a~~~~~~~~~~~~~~~~~~ 368 (546)
...|...+....+.|..+.|..+|.+..+. +. .....|......-.+. ++ +.|.++|+...+..|+...++
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHH
Confidence 346888888888889999999999999875 21 1223333322222333 33 899999999998888777777
Q ss_pred HHHHHhhhhhcchHHHHHHHHHhcccC-c----cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009025 369 KLLLEEQDIEGDFKKEATELFNSISKD-V----KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 369 ~~L~~~~~~~g~~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
...+......| ..+.|..+|+..... + ....|..+++.-.+.|+.+.+.++.+++.+.-
T Consensus 508 ~~y~~fe~~~~-~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 508 NKYLDFLIYVN-EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66676666667 459999999986542 2 24589999999999999999999999998765
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.5e-08 Score=108.38 Aligned_cols=173 Identities=9% Similarity=-0.053 Sum_probs=122.1
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009025 132 GTAGNFDGCLNVYEEMK--------AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 203 (546)
Q Consensus 132 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 203 (546)
...|++++|++.|++.. +.. +.+...+..+..++.+.|++++|.+.|++.++.. +-+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888887 332 3345677777778888888888888888877753 2356777777788888
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009025 204 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 283 (546)
.|++++|++.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.+ +.+...|..+..+|.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887776432 56677777778888888888 88888777765 5567777778888888888888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 009025 284 MFNEMLEAGFEPN-LFVLTSLIQCYGKAQR 312 (546)
Q Consensus 284 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 312 (546)
.|++..+.+ |+ ...|..+..++...++
T Consensus 556 ~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 887776533 44 4556666666655443
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.89 E-value=8.6e-08 Score=89.41 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
+...+..+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|...|++.++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34444555555555555555555555555432 21 34444455555555555555555555554
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=1.9e-07 Score=84.10 Aligned_cols=175 Identities=12% Similarity=0.012 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 009025 139 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR----YGEDTLSVY 214 (546)
Q Consensus 139 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~A~~~~ 214 (546)
+|+..|++..+.| +...+..|...+...+++++|.+.|++..+.| +...+..|..+|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 5778888888764 77888889999999999999999999998875 67788888888887 6 899999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHh----cCCHHHHHHH
Q 009025 215 REMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQP--DSWTFSSMITICSC----RGKVSEAEAM 284 (546)
Q Consensus 215 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~----~g~~~~A~~~ 284 (546)
++..+.| +...+..|...|.. .+++++|+++|++..+.+ .. +...+..|...|.. .+++++|..+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9998875 67788888888877 889999999999998865 21 27788888888888 7889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHhhhCC
Q 009025 285 FNEMLEAGFEPNLFVLTSLIQCYGKA-Q-----RTDDVVRALNRLPELG 327 (546)
Q Consensus 285 ~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 327 (546)
|++..+.+ .+...+..|...|... | +.++|+..|++..+.|
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99988752 3445667777777643 3 7899999998887765
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=1.1e-07 Score=85.48 Aligned_cols=174 Identities=9% Similarity=0.001 Sum_probs=80.1
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 171 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 171 (546)
....+.+.|++++|+..|+...+..+. +...|... ..... .......++.+..++.+.|+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDKN--------------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcch--------------hhhhHHHHHHHHHHHHHCCC
Confidence 334455899999999999999876321 33444440 00000 00011122334444555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY--TDEAFEIF 249 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~ 249 (546)
+++|...|++.++.. +-+...+..+..+|...|++++|+..|++..+.... +..+|..+...|...|+ .+.+...+
T Consensus 70 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555555555554432 123445555555555555555555555555544321 34445545444443332 22333333
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 250 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+..... .|....+..+..++...|++++|...|++.++
T Consensus 148 ~~~~~~---~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 148 KKLSSP---TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp C---CC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHhCC---CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 333210 11222233334444445555555555555554
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=3.8e-06 Score=85.81 Aligned_cols=316 Identities=10% Similarity=0.049 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHH----hcCCh
Q 009025 100 GNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGN-FDGCLNVYEEMKAI-GVK-PNMITYNNLLDTMG----RAKRP 172 (546)
Q Consensus 100 g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~----~~g~~ 172 (546)
|+++.+..+|++.... .|++..|...+....+.+. .+....+|+..... |.. .+...|...+.-+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999985 5799999999988888774 45577788887654 433 36678887776643 24567
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR-------------ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 239 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 239 (546)
+.+.++|++.+.....--...|......-.. .+.+..|..+++.+...-...+...|...+.--...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8899999999874221111122111110000 011222222222222110000222333333321111
Q ss_pred C--C-----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 009025 240 G--Y-----TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL--------------- 297 (546)
Q Consensus 240 g--~-----~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------------- 297 (546)
+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|..+|++.... +.+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~ 261 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAV 261 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHH
T ss_pred CccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHH
Confidence 0 0 123344555544432 334445555555555555555555555555443 1111
Q ss_pred -------------------------HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH--HHHHHHhcCCHHHH
Q 009025 298 -------------------------FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG--CLLNVMTQTPKEEL 350 (546)
Q Consensus 298 -------------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~a 350 (546)
..|...+..+.+.+..+.|..+|++. +.. ..+...|. +.+........+.|
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~a 339 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATP 339 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHH
Confidence 23344444444566677777788777 211 12333333 22222222222777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 351 GKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
..+++...+..|+...++...++...+.|+ .+.|..+|+.... ....|...++.-...|+.+.+.++++++..
T Consensus 340 r~ife~al~~~~~~~~~~~~yid~e~~~~~-~~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 340 YNIFSSGLLKHPDSTLLKEEFFLFLLRIGD-EENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778877777666554444444554455563 4777788877632 355777777777777888888777777764
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=3.3e-06 Score=80.07 Aligned_cols=225 Identities=8% Similarity=0.031 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CChH
Q 009025 138 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK--RPWQVKTIYKEMTDNGLSPNWNTYASLLRAY----GRA---RYGE 208 (546)
Q Consensus 138 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---g~~~ 208 (546)
++|+++++.++... +-+...|+.--.++...+ ++++++++++.++....+ +..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666666553 223445666556666666 666666666666654322 334444333333 333 5666
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD--EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK------VSE 280 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~------~~~ 280 (546)
+++++++.+.+...+ +-.+|+--.-.+.+.|.++ +++++++++.+.. +-|...|+.-...+.+.|. +++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 777777777665433 5666666666666666666 6777777776655 4566666655555555554 666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHhhhCC--CCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 281 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD-VVRALNRLPELG--ITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 281 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
+++.+++++...+. |...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+..++.+.|+ ++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 66676666665543 56666666666666665333 334555444321 11234445555555555555 555555555
Q ss_pred HHH-cCCChhHHH
Q 009025 357 VEK-SNSKLGYVV 368 (546)
Q Consensus 357 ~~~-~~~~~~~~~ 368 (546)
+.+ .+|--..++
T Consensus 284 l~~~~Dpir~~yW 296 (306)
T 3dra_A 284 LKSKYNPIRSNFW 296 (306)
T ss_dssp HHHTTCGGGHHHH
T ss_pred HHhccChHHHHHH
Confidence 543 344433333
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=9e-08 Score=100.31 Aligned_cols=154 Identities=11% Similarity=-0.058 Sum_probs=116.7
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009025 99 AGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 178 (546)
Q Consensus 99 ~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 178 (546)
.|++++|+..|++..+... -+...|..+...|.+.|++++|++.|++..+.. +.+...|..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887643 367889999999999999999999999998874 34678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 009025 179 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV---GYTDEAFEIFEDMKSS 255 (546)
Q Consensus 179 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 255 (546)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+... .+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998864 33678899999999999999999999999888743 3678888899999999 9999999999998887
Q ss_pred C
Q 009025 256 E 256 (546)
Q Consensus 256 ~ 256 (546)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=4.3e-07 Score=82.59 Aligned_cols=187 Identities=12% Similarity=0.025 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCH-HHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-P-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNW-NTYA 195 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~~ 195 (546)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++++.... +.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556667777888889999999999988875211 1 1356777888888889999999999888875322 111 2344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH----------
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF---------- 265 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---------- 265 (546)
.+..++.+.+.. .+ ..|..+...+...|++++|+..|+++.+.. +-+...+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHH
Confidence 444444432210 00 011122233334556666666666666543 1122222
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 266 -------SSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 266 -------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..+...|.+.|++++|...|+++++...... ...+..+..+|.+.|+.++|.+.++.+..
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 2334455556666666666666555321110 13455555556666666666666655554
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=4.1e-07 Score=82.71 Aligned_cols=177 Identities=11% Similarity=-0.005 Sum_probs=117.4
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCc-c-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWR-I-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTM 166 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~ 166 (546)
...+.+.|++++|+..|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+.. |+. ..+..+..++
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHH
Confidence 33455899999999999999986322 1 14678889999999999999999999998763 332 2444455555
Q ss_pred Hh------------------cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH
Q 009025 167 GR------------------AKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 227 (546)
Q Consensus 167 ~~------------------~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 227 (546)
.. .|+.++|...|+++++.. |+ .....+.... ..+...+ ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~--------~~ 148 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL--------AK 148 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH--------HH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH--------HH
Confidence 44 345666666666666542 22 1111111100 0000000 01
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS---WTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 293 (546)
....+...|.+.|++++|+..|+++.+.. +.+. ..+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 12345677888999999999999988764 2222 5678889999999999999999998887643
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1e-07 Score=90.37 Aligned_cols=166 Identities=11% Similarity=0.063 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL- 198 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll- 198 (546)
+...+..+...+.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++|..+++++... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 44556666677777777777777777776653 235566667777777777777777777766553 23433222222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
..+.+.++.++|++.|++...... .+...+..+...|...|++++|++.|+++.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 224555666666777766666532 2566666677777777777777777777666531011145666666666666666
Q ss_pred HHHHHHHHHHH
Q 009025 279 SEAEAMFNEML 289 (546)
Q Consensus 279 ~~A~~~~~~m~ 289 (546)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666666543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=6.8e-08 Score=84.19 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 287 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 287 (546)
...+..+...+...|++++|+..|+++.+...-..+...+..+...+...|+.++|...|++
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 44444444444444444444444444444321001123444444444444444444444443
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=1.3e-07 Score=89.77 Aligned_cols=167 Identities=7% Similarity=-0.053 Sum_probs=120.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH-HH
Q 009025 153 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY-NT 231 (546)
Q Consensus 153 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ 231 (546)
+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+..+|.+.|++++|...++++.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3445566677777888888888888888887753 2356777788888888888888888888776653 343322 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKA 310 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 310 (546)
....+...++.++|++.|++..... +.+...+..+...|...|++++|...|.++.+..... +...+..++..|...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2334666777777888888877765 5677788888888888888888888888888754321 256778888888888
Q ss_pred CChhHHHHHHHHhh
Q 009025 311 QRTDDVVRALNRLP 324 (546)
Q Consensus 311 g~~~~A~~~~~~m~ 324 (546)
|+.++|...|++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888888777654
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=2.9e-07 Score=88.15 Aligned_cols=201 Identities=8% Similarity=-0.015 Sum_probs=112.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..|++++|..++++..+.... . + +...+++++|...|.+. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 356788888888877653110 0 0 11135566666555543 234555566666666
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHH
Q 009025 178 IYKEMTDN----GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFE 247 (546)
Q Consensus 178 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~ 247 (546)
.|.+..+. |-.. -..+|+.+..+|.+.|++++|+..|++..+. |-.. -..+++.+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66555432 1000 1335666666666667777776666655432 1110 13456666666666 77777777
Q ss_pred HHHHHHhCCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 009025 248 IFEDMKSSENC--QP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEPN-LFVLTSLIQCYGKAQRTDDVVR 318 (546)
Q Consensus 248 ~~~~m~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~ 318 (546)
.|++......- .+ ...++..+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665542100 00 1346667777777777777777777776642 11111 2245556666666777777777
Q ss_pred HHHHhh
Q 009025 319 ALNRLP 324 (546)
Q Consensus 319 ~~~~m~ 324 (546)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777766
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=1.9e-07 Score=97.90 Aligned_cols=155 Identities=8% Similarity=-0.035 Sum_probs=120.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
.|++++|++.|++..+.. +-+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 3457889999999999999999999999999864 33688999999999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 009025 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR---GKVSEAEAMFNEMLE 290 (546)
Q Consensus 214 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 290 (546)
|++..+... .+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988753 368899999999999999999999999998875 56788999999999999 999999999999988
Q ss_pred cCC
Q 009025 291 AGF 293 (546)
Q Consensus 291 ~~~ 293 (546)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 654
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=6.3e-08 Score=84.43 Aligned_cols=159 Identities=6% Similarity=0.010 Sum_probs=100.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhc
Q 009025 161 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-CADV 239 (546)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~ 239 (546)
.+...+.+.|++++|...|++.++.. +.+...+..+..+|.+.|++++|+..|++..... |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34445556666666666666554432 1245556666666666666666666666655442 233222221111 1122
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVR 318 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 318 (546)
+...+|+..|++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...|...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 23334677788777654 4567888888888888888888888888888765432 35678888888888888888888
Q ss_pred HHHHhh
Q 009025 319 ALNRLP 324 (546)
Q Consensus 319 ~~~~m~ 324 (546)
.|++.+
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=3.3e-08 Score=83.71 Aligned_cols=139 Identities=9% Similarity=-0.046 Sum_probs=68.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
..|++++|+..++....... -+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 45556666666555544311 123344455555566666666666666555543 2244555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV-YREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
.|++.++... -+..++..+...|.+.|++++|.+. +++..+.... +..+|......+...|
T Consensus 87 ~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 5555555321 1345555555555555555444333 3444443211 3444444444443333
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=8.1e-08 Score=81.31 Aligned_cols=145 Identities=11% Similarity=0.021 Sum_probs=116.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 127 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
|...+...|++++|++.++..... .|+ ...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344556678999999999988754 233 3456678899999999999999999999864 237889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI-FEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
++++|+..|++..+.... +..+|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCc
Confidence 999999999999987533 688999999999999999876665 58877764 5678888888888877775
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=9.9e-06 Score=77.64 Aligned_cols=228 Identities=10% Similarity=-0.014 Sum_probs=134.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009025 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 237 (546)
++.+.....+.+..++|++++++++.... -+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 33333334444555677777777777532 25566666666666666 477777777777776544 6667776666666
Q ss_pred hc-C-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009025 238 DV-G-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS--------EAEAMFNEMLEAGFEPNLFVLTSLIQCY 307 (546)
Q Consensus 238 ~~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~li~~~ 307 (546)
+. + ++++++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 65 5 6777777777777665 566777766555555555554 677777777765543 666666666655
Q ss_pred HhcCC-------hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcc
Q 009025 308 GKAQR-------TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 380 (546)
Q Consensus 308 ~~~g~-------~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~ 380 (546)
.+.++ ++++++.+++++ ..+|.....++.+...+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI----------------------------------~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSI----------------------------------HLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHH----------------------------------HHCTTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHH----------------------------------HhCCCCHHHHHHHHHHHHhcCC
Confidence 55554 344444444444 4444444433332222222221
Q ss_pred h-------------------HHHHHHHHHhccc--------CccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 381 F-------------------KKEATELFNSISK--------DVKKAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 381 ~-------------------~~~A~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
. ..+..++...+.. .+....+.-|++.|...|+.++|.++++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 1222222222221 1344578889999999999999999999975
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=3e-07 Score=88.05 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=151.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
.|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 577889999999887542 111 1 11157888888888765 4578889999999999
Q ss_pred HHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 009025 214 YREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN--CQPD--SWTFSSMITICSCRGKVSEAEAM 284 (546)
Q Consensus 214 ~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~--~~~~~~li~~~~~~g~~~~A~~~ 284 (546)
|.+..+. +-.. -..+|+.+...|...|++++|+..|++...... -.+. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9887653 2111 145888999999999999999999998654310 0222 4678899999988 999999999
Q ss_pred HHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhcCCH-HHHHHH
Q 009025 285 FNEMLEAGFEP-----NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL----GITPD-DRFCGCLLNVMTQTPK-EELGKL 353 (546)
Q Consensus 285 ~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~-~~a~~~ 353 (546)
|++..+..... ...+++.+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|+ ++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99887531111 1467889999999999999999999998752 21111 1356677777778888 999999
Q ss_pred HHHHHHcCCChh
Q 009025 354 VECVEKSNSKLG 365 (546)
Q Consensus 354 ~~~~~~~~~~~~ 365 (546)
+++.. ..|...
T Consensus 218 ~~~al-~~p~~~ 228 (307)
T 2ifu_A 218 VRESY-SIPGFS 228 (307)
T ss_dssp HHHHT-TSTTST
T ss_pred HHHHh-CCCCCC
Confidence 99998 877654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=1.6e-06 Score=77.60 Aligned_cols=123 Identities=7% Similarity=-0.046 Sum_probs=60.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 162 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
+...+...|++++|...|++.. .|+..++..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3334444444444444444331 2344444444455555555555555555444432 1234445555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 242 TDEAFEIFEDMKSSENCQP----------------DSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
+++|++.|++..+.. +. ....+..+...|.+.|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555554432 11 1245566666666666666666666666653
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=1.8e-06 Score=77.39 Aligned_cols=128 Identities=11% Similarity=-0.017 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 272 (546)
.+..+...+...|++++|++.|++.. .++...|..+...|...|++++|++.|++..... +.+...|..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 45566777888899999999988763 4578888999999999999999999999988765 56788888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 273 SCRGKVSEAEAMFNEMLEAGFE--------------P-NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
...|++++|.+.|++..+.... | ....+..+..+|.+.|++++|...|++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999998874322 1 1267788888888899999999999888864
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=5e-06 Score=78.87 Aligned_cols=161 Identities=11% Similarity=0.095 Sum_probs=95.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHHH
Q 009025 163 LDTMGRAKRPWQVKTIYKEMTDNGL-SPNW----NTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNTL 232 (546)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~l 232 (546)
+..+...|++++|..++++..+... .++. ..+..+...|...|++++|+..|++..+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556677777777777777766321 1121 12334555666666777777777777663211 12 2356777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 009025 233 LAMCADVGYTDEAFEIFEDMKS----S-ENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEPN-LFVLT 301 (546)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~----~-~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~ 301 (546)
...|...|++++|+.+|+++.+ . +. .+ ...+|..+...|.+.|++++|...+++..+. +..+. ...|.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7777777777777777777663 1 11 11 2235667777777777777777777765532 11122 45666
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHhh
Q 009025 302 SLIQCYGKAQR-TDDVVRALNRLP 324 (546)
Q Consensus 302 ~li~~~~~~g~-~~~A~~~~~~m~ 324 (546)
.+..+|.+.|+ +++|.+.|++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666663 466766666554
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=3.3e-07 Score=86.59 Aligned_cols=98 Identities=8% Similarity=-0.065 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009025 190 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 269 (546)
Q Consensus 190 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 269 (546)
+...+..+...+.+.|++++|+..|++..+... .+...|..+...|.+.|++++|++.+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 344555566666666666666666666665432 255666666666666677777776666666554 44566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 009025 270 TICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+|...|++++|...|++..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666554
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=1.8e-06 Score=73.62 Aligned_cols=127 Identities=9% Similarity=-0.026 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 272 (546)
.+..+...+...|++++|...|++..+... .+..++..+...+...|++++|++.|++..... +.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 344455555556666666666665555432 245555556666666666666666666655543 34555566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHh
Q 009025 273 SCRGKVSEAEAMFNEMLEAGFEPNLFVLT--SLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m 323 (546)
...|++++|...|++..+.... +...+. .++..+...|++++|+..+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666554321 233332 2222345556666666655544
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.59 E-value=1.7e-06 Score=82.15 Aligned_cols=165 Identities=6% Similarity=-0.054 Sum_probs=125.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHH
Q 009025 126 TLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN----WNTYA 195 (546)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~ 195 (546)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...|++..+.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778899999999999999887421 2221 23445666777788999999999999884322 22 34789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc-----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCCHHHH
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEK-----GMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQPDSWTF 265 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~-----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~ 265 (546)
.+...|...|++++|+..|+++.+. +..+. ..+|..+...|.+.|++++|++.+++..+. +....-..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999998741 11222 347888999999999999999999987642 2211226789
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 009025 266 SSMITICSCRGK-VSEAEAMFNEMLE 290 (546)
Q Consensus 266 ~~li~~~~~~g~-~~~A~~~~~~m~~ 290 (546)
..+...|.+.|+ +++|.+.|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.58 E-value=2.3e-06 Score=69.80 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 273 (546)
+......|.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|++.|++..+.+ +.+...|..+..+|.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHH
Confidence 33344444444444444444444443321 134444444444444444444444444444433 333444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009025 274 CRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~ 290 (546)
..|++++|.+.|++.++
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=3.3e-06 Score=67.80 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 272 (546)
.+..+...|...|++++|.++|+++.+.. +.+..++..+...+...|++++|..+|+++.... +.+..++..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHH
Confidence 33444444444444444444444444332 1133444444444444444444444444444432 23344444444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009025 273 SCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~ 290 (546)
...|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444443
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=3.9e-06 Score=71.49 Aligned_cols=128 Identities=14% Similarity=-0.022 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 237 (546)
.+..+...+...|++++|...|++..+.. +.+..++..+..+|...|++++|++.+++..+... .+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34444444555555555555555554432 12445555555555566666666666655555432 24555666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFS--SMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
..|++++|.+.|++..... +.+...+. .++..+...|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 6666666666666665543 23333332 23333555666666666665543
No 126
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.3e-05 Score=80.34 Aligned_cols=259 Identities=10% Similarity=-0.053 Sum_probs=166.2
Q ss_pred hhhccchhhhcCCHHHHHHHHHHHHhCCCccC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-
Q 009025 89 KLKEKSYDTRAGNVEMAFGLYDRARNEKWRID----------------PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG- 151 (546)
Q Consensus 89 ~l~~~~~~~~~g~~~~A~~l~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 151 (546)
.+.....+.+.|++++|++.|..+.+...... ..++..|...|.+.|++++|.+.+..+...-
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44444556689999999999999987532111 1247789999999999999999998876531
Q ss_pred CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 009025 152 VKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTD----NGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEK-- 220 (546)
Q Consensus 152 ~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-- 220 (546)
-.++. .+.+.+...+...|+.+.+.++++.... .+..+. ..++..+...|...|++++|..+++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 11222 2333344445567889999998887754 232222 567888999999999999999999987643
Q ss_pred CC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 009025 221 GM---QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQP-D--SWTFSSMITICSCRGKVSEAEAMFNEMLEA- 291 (546)
Q Consensus 221 g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 291 (546)
+. .....++..++..|...|++++|..++++..... ...| . ...+..+...+...|++++|...|.+..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 11 1124678889999999999999999998865421 1012 1 345677778888899999999888777542
Q ss_pred ---CCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHhh--hCCCCCCHHHHHHHHHHHhcCCH
Q 009025 292 ---GFEPNLFVLT----SLIQCYGKAQRTDDVVRALNRLP--ELGITPDDRFCGCLLNVMTQTPK 347 (546)
Q Consensus 292 ---~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~--~~~~~p~~~t~~~ll~~~~~~g~ 347 (546)
+......... .++-+....+..+.....+.... .....++...+..++.++....-
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 311 (434)
T 4b4t_Q 247 HNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSL 311 (434)
T ss_dssp HHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhH
Confidence 2222221111 11222222333344444443322 22233445667777777776654
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=9.4e-06 Score=76.91 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---hCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMK---SSENCQP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEAG----FEP-NL 297 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~ 297 (546)
+|+.+...|...|++++|+..|++.. +.....+ ...++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 44444555555555555555554443 1100000 11344455555555555555555555443211 000 03
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHh
Q 009025 298 FVLTSLIQCYGKAQRTDDV-VRALNRL 323 (546)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A-~~~~~~m 323 (546)
.+|..+..+|.+.|++++| ...|++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4445555555555555555 4444443
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.54 E-value=2.6e-06 Score=69.44 Aligned_cols=101 Identities=8% Similarity=0.016 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|...|++.++.+.. +...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 456667777888888888888888877765 567778888888888888888888888887775432 56777778888
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 307 YGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
|...|++++|+..|++.++ +.|+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~--l~P~~ 114 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ--VDPSN 114 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHCCCHHHHHHHHHHHHH--HCcCC
Confidence 8888888888888887776 34543
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=1.3e-06 Score=77.41 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----H
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEK----GMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----S 262 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~ 262 (546)
++..+...|...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++......-..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444444445555444444443321 1010 1233444444555555555555555544321000011 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
.++..+...+...|++++|.+.+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 223444455555555555555554443
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=3.7e-06 Score=68.17 Aligned_cols=117 Identities=16% Similarity=0.041 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
..+..+...+...|++++|...|++...... .+...+..+...+...|++++|.+.+++..... +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHH
Confidence 3444444555555555555555555544321 134445555555555555555555555555432 3344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 312 (546)
|...|++++|...|++..+... .+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 5555555555555555554322 134444444444444443
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.52 E-value=8.1e-05 Score=71.30 Aligned_cols=170 Identities=6% Similarity=0.010 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHH
Q 009025 137 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-R-YGEDTLSV 213 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g-~~~~A~~~ 213 (546)
.++|+++++.++... +-+..+|+.--..+...| ++++++++++.++.... -+..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 345666666666653 224445666555555566 46677777777666532 2555666555555554 5 66677777
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-------H
Q 009025 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTD--------EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-------V 278 (546)
Q Consensus 214 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-------~ 278 (546)
++++.+...+ +-.+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++ +
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHH
Confidence 7777665433 5666665555555544444 7777777777765 5677777777766666665 5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 312 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 312 (546)
+++++.+++++...+. |...|+.+-..+.+.|+
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 7777777777765543 66677666666655554
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=3.2e-06 Score=78.34 Aligned_cols=187 Identities=9% Similarity=-0.069 Sum_probs=107.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC---------------
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTL-------IKLYGTAGNFDGCLNVYEEMKAIGVKPN--------------- 155 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 155 (546)
+.++.+.|++.|.++.+..+. ....|+.+ ...+.+.++..+++..+....+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 567888888888888776433 66677766 4555555555555555554443 1111
Q ss_pred -------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--H
Q 009025 156 -------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--V 226 (546)
Q Consensus 156 -------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~ 226 (546)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233345555666777777777776665533 333344455556666777777777766443321 110 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD--SWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
..+..+..++...|++++|+..|++...... .|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~-~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPA-GEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT-TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC-CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455566666667777777777766653221 132 234455555666666666666666666654
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=1.2e-05 Score=76.13 Aligned_cols=168 Identities=7% Similarity=0.002 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCC--H
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPD--S 262 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~--~ 262 (546)
..+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|+..|++......- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556666777777777777776665432211 122344556667778888888888877643210 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCCC-
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEMLE---AGFE-P--NLFVLTSLIQCYGKAQRTDDVVRALNRLPEL----GITPD- 331 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~- 331 (546)
.+|+.+...|...|++++|...|++..+ .... + ...++..+...|...|++++|+..|++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778888888888888888888888762 2111 1 1257777888888888888888888877642 11111
Q ss_pred HHHHHHHHHHHhcCCH-HHH-HHHHHHHHH
Q 009025 332 DRFCGCLLNVMTQTPK-EEL-GKLVECVEK 359 (546)
Q Consensus 332 ~~t~~~ll~~~~~~g~-~~a-~~~~~~~~~ 359 (546)
..++..+..++...|+ ++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4567778888888888 777 666666544
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=5.4e-06 Score=66.50 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 201 (546)
..|..+...+...|++++|+++|+++.+.. +.+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344445555555555555555555554432 2233444444444444444444444444444332 12333444444444
Q ss_pred HhcCChHHHHHHHHHHHH
Q 009025 202 GRARYGEDTLSVYREMKE 219 (546)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~ 219 (546)
.+.|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444443
No 135
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.51 E-value=8.9e-05 Score=70.66 Aligned_cols=227 Identities=7% Similarity=0.046 Sum_probs=143.6
Q ss_pred HHcCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 132 GTAGNFD-GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR----------PWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 132 ~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
.+.|.+. +|+++++.+.... +-+..+|+.--..+...+. +++++.+++.++... +-+..+|+.-.-+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456555 6899999888764 2244456654444433332 567778888877753 2367777777667
Q ss_pred HHhcC--ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--
Q 009025 201 YGRAR--YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY-TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-- 275 (546)
Q Consensus 201 ~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-- 275 (546)
+.+.+ .+++++.+++.+.+.... |-.+|+--.-.+...|. ++++++.++++.+.. +-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhh
Confidence 76777 478888888888877544 77778777777777777 588888888888765 56777777666655554
Q ss_pred ------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHhhhCCCCCCH
Q 009025 276 ------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA-----------QRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 276 ------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
+.++++++.+++.+...+. |...|+-+-..+.+. +.++++++.++++.+ +.||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 4467788888877765543 666676555555444 346677777777776 34543
Q ss_pred H-HH---HHHHHHHhcCCH-HHHHHHHHHHHHcCCChhH
Q 009025 333 R-FC---GCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 366 (546)
Q Consensus 333 ~-t~---~~ll~~~~~~g~-~~a~~~~~~~~~~~~~~~~ 366 (546)
. .+ ..+..+....+. +++...+.++.+.+|.-..
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 310 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence 1 11 111122223334 5666666666666665443
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=1.3e-06 Score=73.72 Aligned_cols=96 Identities=9% Similarity=0.028 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++..+.... +...|..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 344555555555566666666665555543 345555555555566666666666666555554322 34455555555
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 009025 307 YGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~ 325 (546)
|.+.|++++|+..|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5666666666666655554
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=8.5e-07 Score=77.07 Aligned_cols=119 Identities=8% Similarity=0.042 Sum_probs=71.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGKV--S 279 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 279 (546)
..|++++|+..+++..+... .+...|..+...|...|++++|+..|++..... +.+...+..+... |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 44566666666666655432 255666666666666667777766666666543 3455566666666 5566666 6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
+|...|+++.+.... +...+..+...|...|++++|...|+++.+
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777777666654322 455666666666667777777777766665
No 138
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.50 E-value=2.3e-05 Score=80.08 Aligned_cols=209 Identities=10% Similarity=0.110 Sum_probs=134.9
Q ss_pred hcC-CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHH
Q 009025 98 RAG-NVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQV 175 (546)
Q Consensus 98 ~~g-~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a 175 (546)
+.| +++.|+.+|+.+... -|. |+++.+..+|++.... .|+...|...+.-..+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488899999988764 333 8899999999999885 5899999999988877764 4567
Q ss_pred HHHHHHHHHC-CCC-CCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH------------
Q 009025 176 KTIYKEMTDN-GLS-PNWNTYASLLRAYG----RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA------------ 237 (546)
Q Consensus 176 ~~~~~~m~~~-g~~-p~~~~~~~ll~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~------------ 237 (546)
..+|+..+.. |.. .+...|...+..+. ..++.+.+.++|++.+.....--...|......-.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 7888887764 533 36678888877664 34678899999999987422111223332222111
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009025 238 -DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG--K-----VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 309 (546)
Q Consensus 238 -~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 309 (546)
..+.+..|..+++++...-. ..+...|...+..-...+ - .+.+..+|++++.... .+...|...+.-+.+
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~-~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIR-GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 11223344444544443110 123446666555533321 1 3457789999887543 457888888888899
Q ss_pred cCChhHHHHHHHHhhhC
Q 009025 310 AQRTDDVVRALNRLPEL 326 (546)
Q Consensus 310 ~g~~~~A~~~~~~m~~~ 326 (546)
.|+.++|..+|++....
T Consensus 226 ~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM 242 (493)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC
Confidence 99999999999999876
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=1.5e-06 Score=77.13 Aligned_cols=156 Identities=10% Similarity=-0.041 Sum_probs=117.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCh
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVK-PNMITYNNLLDTMGRAKRP 172 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~ll~~~~~~g~~ 172 (546)
..|++++|.++++.+... ......++..+...|...|++++|+..|++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 679999999966665542 2336778999999999999999999999998762 212 2345788888999999999
Q ss_pred hHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCC
Q 009025 173 WQVKTIYKEMTDN----GLSP--NWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGY 241 (546)
Q Consensus 173 ~~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~ 241 (546)
++|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+. +... -..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999887653 2111 2456788889999999999999999987642 2111 12346788889999999
Q ss_pred HHHHHHHHHHHHh
Q 009025 242 TDEAFEIFEDMKS 254 (546)
Q Consensus 242 ~~~A~~~~~~m~~ 254 (546)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=3.2e-06 Score=68.96 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 272 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 272 (546)
.+..+...+.+.|++++|++.|++..+... .+...+..+...|...|++++|++.|++..+.. +.+...+..+...|
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHHHH
Confidence 333344444444444444444444433321 133334444444444444444444444444332 22334444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009025 273 SCRGKVSEAEAMFNEML 289 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~ 289 (546)
...|++++|.+.|++..
T Consensus 95 ~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444443
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=1.2e-06 Score=76.12 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=96.9
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--
Q 009025 96 DTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT-MGRAKRP-- 172 (546)
Q Consensus 96 ~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~-- 172 (546)
+...|++++|+..|+...+... .+...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 4478899999999999887643 378899999999999999999999999988764 3467778888888 7788888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
++|...+++.++.. +.+...+..+..+|...|++++|...|+++.+..
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999988763 2357788888888999999999999999888764
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=7.7e-06 Score=75.83 Aligned_cols=187 Identities=9% Similarity=-0.059 Sum_probs=118.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCCC---------------
Q 009025 133 TAGNFDGCLNVYEEMKAIGVKPNMITYNNL-------LDTMGRAKRPWQVKTIYKEMTDNGLSPN--------------- 190 (546)
Q Consensus 133 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------- 190 (546)
..++...|.+.|.++.+.. +-....|+.+ ...+.+.++..++...+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5688889999999888764 3356677766 3445555445544444444333 2211
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--
Q 009025 191 -------WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD-- 261 (546)
Q Consensus 191 -------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-- 261 (546)
...+-.+..++...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccH
Confidence 2234445666777788888888887776543 333355555667778888888888887554421 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566777777888888888888887764332243 335566666777778888888888777763
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.45 E-value=5.4e-06 Score=69.86 Aligned_cols=99 Identities=10% Similarity=-0.037 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
...+..+...+.+.|++++|+..|++....... +...|..+..+|...|++++|+..|++..... +.+...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHH
Confidence 456777778888888888888888888877533 67888888888888888888888888888765 556778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 009025 271 ICSCRGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~~ 292 (546)
+|...|++++|...|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888753
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=6.3e-06 Score=66.76 Aligned_cols=118 Identities=10% Similarity=0.042 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455555555555566666666665555432 2244455555555555555555555555554432 123444445555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
+|.+.|++++|.+.|++..+... .+...+..+...+.+.|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 55555555555555555444321 13344444444444443
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=4.2e-06 Score=81.11 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.++.... +...+..+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 272 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3556666666666666666666666666654 445666666666666666666666666666654322 4555666666
Q ss_pred HHHhcCChhHH-HHHHHHhh
Q 009025 306 CYGKAQRTDDV-VRALNRLP 324 (546)
Q Consensus 306 ~~~~~g~~~~A-~~~~~~m~ 324 (546)
++.+.|+.++| ..+|+.|.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666 33444443
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=5.6e-06 Score=67.47 Aligned_cols=98 Identities=10% Similarity=0.012 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555555555555555555555555432 2244445555555555555555555555554432 123444444444
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 009025 200 AYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~ 219 (546)
+|.+.|++++|++.|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555554444
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=5.2e-06 Score=80.44 Aligned_cols=132 Identities=8% Similarity=-0.094 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN--------------WNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
...|..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666677777777777777777777766432211 4788888999999999999999999988875
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 009025 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA-EAMFNEMLE 290 (546)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 290 (546)
. .+...|..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.|+.++| ..+|+.|..
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 378888999999999999999999999988875 56788888899999999998888 456666654
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=1.8e-06 Score=81.51 Aligned_cols=98 Identities=6% Similarity=-0.040 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
+...+..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|...+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666666666677777777776666542 2255566666666666666666666666666542 224556666666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 009025 200 AYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~ 219 (546)
+|.+.|++++|+..|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.37 E-value=1.8e-06 Score=72.72 Aligned_cols=96 Identities=13% Similarity=0.056 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++....... +...|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 344444555555555555555555555443 344555555555555555555555555555543321 34445555555
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 009025 307 YGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~ 325 (546)
|...|++++|+..|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=1.1e-06 Score=78.05 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.+..+..+|.+.|++++|+..+++..+... .+...+..+..+|...|++++|++.|++...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 333444444444444444444444443321 1333444444444444444444444444433
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.3e-05 Score=64.88 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 307 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 307 (546)
.|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|++..+.... +...|..+..+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34444444455555555555555544433 334445555555555555555555555555443221 344444555555
Q ss_pred HhcCChhHHHHHHHHhhh
Q 009025 308 GKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 308 ~~~g~~~~A~~~~~~m~~ 325 (546)
...|++++|+..|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555555555555554443
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.32 E-value=2.6e-06 Score=71.70 Aligned_cols=98 Identities=15% Similarity=0.032 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
...+..+...+.+.|++++|+..|++...... .+...|..+..+|...|++++|+..|++..... +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHH
Confidence 34555566667777777777777777666542 256667777777777777777777777776654 445666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 009025 271 ICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~ 291 (546)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776653
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=3.2e-05 Score=61.11 Aligned_cols=60 Identities=20% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.|++..
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333344444444443333322 2233333333333333334444433333333
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.3e-05 Score=65.27 Aligned_cols=96 Identities=9% Similarity=0.054 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF--EPN----LFVLT 301 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 301 (546)
++..+...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|++.++... .++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 44455555555555555555555555543 34455555555555556666666555555543211 111 12445
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhh
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+..++...|++++|++.|++.++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555556666666666666666554
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.9e-05 Score=63.91 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
..+..+...+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 3455566666677777777777776666532 256667777777777777777777777766654 4456667777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009025 272 CSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~ 290 (546)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7777777777777776665
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=2e-05 Score=69.76 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 306 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 306 (546)
..|..+..+|...|++++|+..+++..... +.+...+..+..+|...|++++|.+.|++..+.... +...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 677778888888888888888888888765 567788888888888888888888888888775432 56667777777
Q ss_pred HHhcCChhHHH-HHHHHhhh
Q 009025 307 YGKAQRTDDVV-RALNRLPE 325 (546)
Q Consensus 307 ~~~~g~~~~A~-~~~~~m~~ 325 (546)
+...++.+++. ..|..|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 76666666655 44555543
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.26 E-value=0.00063 Score=64.79 Aligned_cols=193 Identities=7% Similarity=-0.036 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG--YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAM 284 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 284 (546)
++++.+++.+.....+ +..+|+.-...+.+.| .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4445555554444322 4444444444444444 2455555555555443 3444444444444444444 3455555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC--CH-HHHHHHHHHHHHcC
Q 009025 285 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PK-EELGKLVECVEKSN 361 (546)
Q Consensus 285 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--g~-~~a~~~~~~~~~~~ 361 (546)
++++++..+. |...|+.....+.+.+....+ ++ -... +. +++.+.+......+
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~-------------~~----------~~~~~~~~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS-------------GP----------QGRLPENVLLKELELVQNAFFTD 223 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-----------------------------CCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc-------------cc----------ccccchHHHHHHHHHHHHHHHhC
Confidence 5555544332 444444433333222100000 00 0000 22 56666666666677
Q ss_pred CChhHHHHHHHHhhhhh-c---------chHHHHHHHHHhccc-CccchhhHHHHHHH-----HhcCCHHHHHHHHHHHH
Q 009025 362 SKLGYVVKLLLEEQDIE-G---------DFKKEATELFNSISK-DVKKAYCNCLIDLC-----VNLNLLENACKLLELGL 425 (546)
Q Consensus 362 ~~~~~~~~~L~~~~~~~-g---------~~~~~A~~~~~~~~~-~~~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~ 425 (546)
|....+++.+...+... | +.++++++.++++.. .|+. .|+.+.-+. ...|..++....+.+++
T Consensus 224 P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 224 PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 76666654332222222 1 245677776666542 3443 343322222 13567778888888887
Q ss_pred hcc
Q 009025 426 TLE 428 (546)
Q Consensus 426 ~~g 428 (546)
+.+
T Consensus 303 ~~D 305 (331)
T 3dss_A 303 AVD 305 (331)
T ss_dssp HHC
T ss_pred HhC
Confidence 665
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=5.2e-05 Score=59.90 Aligned_cols=95 Identities=12% Similarity=-0.056 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009025 159 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 238 (546)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 238 (546)
+..+...+...|++++|...|++..... +.+...+..+..+|.+.|++++|...+++..+... .+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 3334444444444444444444444321 11344444444444445555555555554444321 134444555555555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 009025 239 VGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 239 ~g~~~~A~~~~~~m~~~ 255 (546)
.|++++|.+.|++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 55555555555555443
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=3.9e-05 Score=62.90 Aligned_cols=96 Identities=8% Similarity=-0.070 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
...+..+...+.+.|++++|+..|++...... .+...|..+...+...|++++|+..|++..... +.+...+..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHH
Confidence 33344444444444444444444444433321 133344444444444444444444444444332 223334444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 009025 271 ICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~ 289 (546)
.|...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444433
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=1.6e-05 Score=62.30 Aligned_cols=56 Identities=5% Similarity=-0.045 Sum_probs=21.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
...+.+.|++++|...|++..+... .+...|..+...+...|++++|.+.|++..+
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3333344444444444443333221 1233333333334444444444444444333
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.20 E-value=2.2e-05 Score=65.27 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=32.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
.+.+.|++++|+..|++...... .+...|..+..+|...|++++|+..|++..... +.+...+..+..+|...|+++
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHH
Confidence 33333444444444443333321 133333333333444444444444444433332 223333333333344444444
Q ss_pred HHHHHHHHH
Q 009025 280 EAEAMFNEM 288 (546)
Q Consensus 280 ~A~~~~~~m 288 (546)
+|.+.|++.
T Consensus 104 ~A~~~~~~a 112 (142)
T 2xcb_A 104 GAESGFYSA 112 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=3.3e-05 Score=65.92 Aligned_cols=96 Identities=13% Similarity=0.005 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
..+..+...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34444555555555555555555555544221 44555555555555555555555555555543 3345555555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009025 272 CSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~ 290 (546)
|...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.20 E-value=2.2e-05 Score=65.23 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++....... +...|..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 4455666777788888888888888887765 567777888888888888888888888888775432 5566777778
Q ss_pred HHHhcCChhHHHHHHHHhhh
Q 009025 306 CYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 306 ~~~~~g~~~~A~~~~~~m~~ 325 (546)
+|...|++++|+..|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887765
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=7.6e-05 Score=61.85 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 267 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 267 (546)
..+..+...+.+.|++++|++.|++..+.. |+ ...|..+...|...|++++|++.+++..... +.+...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHH
Confidence 334444444444444444444444444331 22 3344444444444444444444444444332 223444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009025 268 MITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+..+|...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=1.8e-05 Score=64.03 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCC----HHHHHHH
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPD----SWTFSSM 268 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~~~~~l 268 (546)
+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...|++....... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444332 113344444444444444444444444444332100 011 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009025 269 ITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 269 i~~~~~~g~~~~A~~~~~~m~~ 290 (546)
...|...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=4.1e-05 Score=62.75 Aligned_cols=98 Identities=13% Similarity=-0.044 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 304 (546)
+...|..+...+...|++++|+..|++..... +.+...|..+...|...|++++|...|++..+.... +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 56777788888888888888888888877765 556778888888888888888888888888775432 567778888
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 009025 305 QCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888887764
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=0.00012 Score=73.23 Aligned_cols=198 Identities=7% Similarity=-0.067 Sum_probs=141.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPN----------------MITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPN 190 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 190 (546)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999987532111 134778899999999999999999887653 11122
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 009025 191 W----NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----EN 257 (546)
Q Consensus 191 ~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 257 (546)
. .+.+.+-..+...|+.++|.++++..... +..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23334444555678999999999877542 2222 2467888999999999999999999987643 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 258 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GF-EP-N--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
-.....++..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0123557889999999999999999999887642 11 12 1 24566677778889999999988877753
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=7.7e-05 Score=61.84 Aligned_cols=100 Identities=7% Similarity=0.007 Sum_probs=69.6
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 009025 118 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 193 (546)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 193 (546)
..+...+..+...+...|++++|+..|++..+. .|+ ...|..+..++...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346777888888888888888888888888765 355 4566666677777777777777777766642 224566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
+..+..+|...|++++|.+.|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666677777777777777666654
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=4.2e-05 Score=62.18 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPN----WNTYA 195 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~ 195 (546)
.++..+...+.+.|++++|++.|++..+.. +-+...|+.+..++.+.|++++|++.+++.++... ..+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345556666666666666666666666543 23455566666666666666666666666554210 111 12444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~ 219 (546)
.+..+|...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555555555555555555544
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.16 E-value=3.1e-05 Score=66.10 Aligned_cols=98 Identities=9% Similarity=-0.060 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 304 (546)
+...|..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|...|++.++.... +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34556666677777777777777777777654 446667777777777777777777777777765432 466666777
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 009025 305 QCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+|...|++++|+..|++..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 777777777777777776664
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=4e-05 Score=61.89 Aligned_cols=110 Identities=10% Similarity=0.068 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF--EPN----LFV 299 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~ 299 (546)
...|..+...+...|++++|...|++..... +.+...+..+...|...|++++|...|++..+... .++ ...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567788888999999999999999988765 56788889999999999999999999998876432 122 677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 339 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 339 (546)
|..+..+|...|++++|...|++..+. .|+......+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 888888899999999999999988874 35655444443
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.12 E-value=2.9e-05 Score=60.76 Aligned_cols=101 Identities=14% Similarity=0.006 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVLTSL 303 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l 303 (546)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+.... .+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34556677788888899999999998888765 567778888888888899999999999888875321 147778888
Q ss_pred HHHHHhc-CChhHHHHHHHHhhhCC
Q 009025 304 IQCYGKA-QRTDDVVRALNRLPELG 327 (546)
Q Consensus 304 i~~~~~~-g~~~~A~~~~~~m~~~~ 327 (546)
..+|... |++++|++.|++..+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 8888888 89999999888887643
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=2.9e-05 Score=62.61 Aligned_cols=91 Identities=13% Similarity=-0.009 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 311 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 311 (546)
+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+.... +...+..+..+|...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3344445555555555555554433 334445555555555555555555555555443321 3444445555555555
Q ss_pred ChhHHHHHHHHhhh
Q 009025 312 RTDDVVRALNRLPE 325 (546)
Q Consensus 312 ~~~~A~~~~~~m~~ 325 (546)
++++|+..|++.++
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=4.3e-05 Score=77.78 Aligned_cols=118 Identities=10% Similarity=0.028 Sum_probs=67.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
.|.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 34556666666666666665532 245666666666666666666666666666654 445666666666666677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQC--YGKAQRTDDVVRALN 321 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 321 (546)
+|.+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777666654321 22333333333 566667777776666
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=4.1e-05 Score=61.67 Aligned_cols=91 Identities=9% Similarity=-0.024 Sum_probs=51.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 197 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+.. +-+...+..+...|...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 344555556666666666665554322 45555555566666666666666666655543 344555556666666666
Q ss_pred CHHHHHHHHHHHHH
Q 009025 277 KVSEAEAMFNEMLE 290 (546)
Q Consensus 277 ~~~~A~~~~~~m~~ 290 (546)
++++|...|++.++
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=3.8e-05 Score=64.62 Aligned_cols=133 Identities=11% Similarity=-0.052 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----CHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP----DSW 263 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~ 263 (546)
++..+...|...|++++|+..+++..+.... .+ ..++..+...+...|++++|.+.+++......... ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555566666666655554432100 01 13555566666666666666666666543210001 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...|...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5556666677777777777777665532 1100 134456666777777777777777776653
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.03 E-value=3.1e-05 Score=65.14 Aligned_cols=131 Identities=18% Similarity=0.056 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----H
Q 009025 122 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN----W 191 (546)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~ 191 (546)
.++..+...|...|++++|+..+++..+.... .+ ..++..+...+...|++++|.+.+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566666777777777777777766543100 11 124555556666666666666666555432100 01 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
.++..+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34444555555555555555555544321 100 01223344444444444444444444443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=8.1e-05 Score=75.34 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
...|..+..+|.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++.++.... +...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4566666677777777777777777766654 456666777777777777777777777776664321 3455666666
Q ss_pred HHHhcCChhHHHH-HHHHhh
Q 009025 306 CYGKAQRTDDVVR-ALNRLP 324 (546)
Q Consensus 306 ~~~~~g~~~~A~~-~~~~m~ 324 (546)
++.+.|+.+++.+ .+..|.
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 6666666665543 444444
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=0.0011 Score=68.75 Aligned_cols=169 Identities=10% Similarity=-0.043 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009025 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----------TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 275 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 275 (546)
..++|++.++++...+.. +..+|+.--..+...|+ ++++++.++.+.+.. +.+..+|..-.-.+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 345678888887776543 55667666666666666 788888888888765 66778888777777788
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC-------
Q 009025 276 G--KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ-RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT------- 345 (546)
Q Consensus 276 g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------- 345 (546)
| +++++.+.++++.+...+ |...|+.-...+.+.| .++++++.++++++.... |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 668888888888887654 7788887777777777 788888888888875422 455666555555442
Q ss_pred -------CH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhhc
Q 009025 346 -------PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 379 (546)
Q Consensus 346 -------g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g 379 (546)
+. +++.+.+..+...+|....++..+...+...+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 33 78888888888888888888877776665544
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00011 Score=62.50 Aligned_cols=62 Identities=21% Similarity=0.106 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
..|..+..+|.+.|++++|...+++.++.... +...|..+..+|...|++++|+..|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 44555555555555555555555555543321 344555555555555555555555555544
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.91 E-value=0.00017 Score=72.97 Aligned_cols=131 Identities=8% Similarity=-0.056 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009025 156 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN--------------WNTYASLLRAYGRARYGEDTLSVYREMKEKG 221 (546)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 221 (546)
...|..+...+.+.|++++|...|++.++...... ...|..+..+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566677777777777777777777766321111 5788889999999999999999999998875
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 009025 222 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA-MFNEML 289 (546)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 289 (546)
.. +...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++.+ ++..|.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 68889999999999999999999999998865 5567788888888888888877664 444444
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.91 E-value=0.00049 Score=55.44 Aligned_cols=89 Identities=13% Similarity=-0.021 Sum_probs=41.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSV---TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITIC 272 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~ 272 (546)
..+.+.|++++|...|+++.+.... +. ..+..+..++...|++++|...|++..... +.+ ...+..+..+|
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHH
Confidence 3444455555555555554443211 11 244444445555555555555555544432 112 33444445555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009025 273 SCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~ 290 (546)
...|++++|...|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.91 E-value=0.00025 Score=57.18 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 009025 230 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS---WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLI 304 (546)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li 304 (546)
..+...+...|++++|...|+++.+.. +.+. ..+..+...+...|++++|...|++..+...... ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345566778888888888888887754 2233 4777788888888888888888888887543211 56677778
Q ss_pred HHHHhcCChhHHHHHHHHhhhC
Q 009025 305 QCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
.+|...|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888764
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.89 E-value=1.8e-05 Score=63.25 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=7.0
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 009025 232 LLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~ 250 (546)
+..++...|++++|+..|+
T Consensus 67 l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3333333333333333333
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.89 E-value=0.00017 Score=70.72 Aligned_cols=121 Identities=9% Similarity=0.006 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009025 194 YASLLRAYGRARYGEDTLSVYREMKEK---------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 258 (546)
Q Consensus 194 ~~~ll~~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 258 (546)
+..+...|.+.|++++|++.|++..+. --+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Confidence 344444555555555555555554431 001134567777777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
+.+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777764322 4555666666666555555554
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.84 E-value=4.3e-05 Score=61.04 Aligned_cols=86 Identities=8% Similarity=0.026 Sum_probs=60.4
Q ss_pred cCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 204 ARYGEDTLSVYREMKEKG--MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 204 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
.|++++|+..|++..+.+ -+-+...+..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 467777777777777653 12245667777778888888888888888877765 45677777788888888888888
Q ss_pred HHHHHHHHHc
Q 009025 282 EAMFNEMLEA 291 (546)
Q Consensus 282 ~~~~~~m~~~ 291 (546)
...|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877764
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00021 Score=60.58 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
+...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34677777888888888888888888887765 567778888888888888888888888887764
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.84 E-value=5.8e-05 Score=76.79 Aligned_cols=118 Identities=9% Similarity=-0.027 Sum_probs=86.1
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
.+.+.|++++|+..|++..+... -+..+|..+..+|.+.|++++|++.|++..+.. +-+...|..+..++.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 44478899999999998887642 267888888899999999999999999888874 3467788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRA--YGRARYGEDTLSVYR 215 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~ 215 (546)
|.+.|++..+... .+...+..+..+ +.+.|++++|+++++
T Consensus 93 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877532 133344444444 777788888888877
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.80 E-value=0.0015 Score=67.76 Aligned_cols=174 Identities=6% Similarity=-0.010 Sum_probs=139.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 136 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR----------PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 136 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
.-++|++.++++.+.. +-+..+|+.--.++...|+ ++++++.++.+.+... -+..+|+.-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 3467899999998874 3355677777777766666 8999999999988643 37788888888888888
Q ss_pred --ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-------
Q 009025 206 --YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR------- 275 (546)
Q Consensus 206 --~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~------- 275 (546)
++++++++++++.+.... +..+|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccccc
Confidence 679999999999988654 7888998888888888 8999999999998876 67888888877776663
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 276 -------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 315 (546)
Q Consensus 276 -------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 315 (546)
+.++++.+.+++....... |...|+.+-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999998876543 67888888888888777554
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.77 E-value=9.5e-05 Score=71.55 Aligned_cols=95 Identities=9% Similarity=-0.026 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC- 306 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~- 306 (546)
.|..+..+|.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++..+.... +...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 44445555555555555555555554433 334455555555555555555555555554432111 22223322222
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 009025 307 YGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 307 ~~~~g~~~~A~~~~~~m~~ 325 (546)
....+..+++..+|..|..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 1223444555555555543
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.77 E-value=0.00025 Score=69.46 Aligned_cols=123 Identities=7% Similarity=-0.058 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDN---------------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 222 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 222 (546)
.+..+...+.+.|++++|++.|++.++. --+.+..+|..+..+|.+.|++++|++.+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3555566666666666666666666541 0112456778888888888999999988888887643
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009025 223 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 283 (546)
-+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++.+
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 267788888888888999999999988888764 4567777777777777776666544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=9.9e-05 Score=71.44 Aligned_cols=151 Identities=11% Similarity=-0.026 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 270 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 270 (546)
...+..+...|.+.|++++|+..|++..... |+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 3456667777788888888888888877652 23221 223333444332221 136788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcC-CH-
Q 009025 271 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQT-PK- 347 (546)
Q Consensus 271 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~-g~- 347 (546)
+|.+.|++++|...|++.++... .+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+....... +.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887643 2678888999999999999999999999876 345543 333333332332 33
Q ss_pred HHHHHHHHHHHHcCCCh
Q 009025 348 EELGKLVECVEKSNSKL 364 (546)
Q Consensus 348 ~~a~~~~~~~~~~~~~~ 364 (546)
+++.+.+..+....|..
T Consensus 316 ~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHhhCCCCCC
Confidence 77777888887766643
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=0.00048 Score=57.62 Aligned_cols=59 Identities=15% Similarity=-0.018 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCc------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQL------S-----VTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.....+.+.|++++|+..|++..+..... + ...|+.+..++.+.|++++|+..+++.++
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455555555555555554432110 1 12444444555555555555555444443
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.0015 Score=53.75 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHHHh
Q 009025 240 GYTDEAFEIFEDMKS 254 (546)
Q Consensus 240 g~~~~A~~~~~~m~~ 254 (546)
+++++|.++|++..+
T Consensus 111 ~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 111 KNEKQAVKTFEKACR 125 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 333334333333333
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.66 E-value=0.00063 Score=56.89 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-----DSW-----TFSSMITICSCRGKVSEAEAMFNEMLEA---- 291 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 291 (546)
...+......+.+.|++++|+..|++..+.....| +.. .|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34556667778889999999999998887542000 232 7888888888888888888888887764
Q ss_pred -CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 292 -GFEPN-LFVL----TSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 292 -~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.+.|+ ...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11344 4556 6777777777777777777777653
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.002 Score=52.89 Aligned_cols=111 Identities=10% Similarity=-0.092 Sum_probs=72.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHH
Q 009025 170 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEA 245 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A 245 (546)
+++++|.+.|++..+.|. ++.. |..+|...+.+++|++.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345666777777666652 2322 5556666666667777777776664 56666666666666 6677777
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAG 292 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 292 (546)
+++|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776644 45566666666766 677777777777776654
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.59 E-value=0.00031 Score=71.18 Aligned_cols=125 Identities=12% Similarity=0.017 Sum_probs=76.2
Q ss_pred HHhcCChHHHHHHHHHHHHc-----CC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-CHHHHHH
Q 009025 201 YGRARYGEDTLSVYREMKEK-----GM-QL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-----ENCQP-DSWTFSS 267 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~-~~~~~~~ 267 (546)
+...|++++|+.++++..+. |. .| ...+++.|...|...|++++|+.++++.... |...| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45677778887777766542 11 11 2356777777777778877777777765431 21122 2345777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 268 MITICSCRGKVSEAEAMFNEMLE-----AGFE-PN-LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 268 li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
|...|...|++++|..++++..+ .|.. |+ ..+.+.+-.++...+.+++|..+|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653 1211 11 23344555566666777777777776654
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00026 Score=71.78 Aligned_cols=88 Identities=7% Similarity=-0.104 Sum_probs=43.8
Q ss_pred HHHcCChHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC-C-CHHHHHH
Q 009025 131 YGTAGNFDGCLNVYEEMKAIG---VKP----NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-----GLS-P-NWNTYAS 196 (546)
Q Consensus 131 ~~~~g~~~~A~~~~~~m~~~g---~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-p-~~~~~~~ 196 (546)
+...|++++|+.++++.++.. +.+ ...+++.|..+|...|++++|+.++++.++. |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334566666666666554320 111 1235555666666666666666655554431 110 1 1234555
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 009025 197 LLRAYGRARYGEDTLSVYREMK 218 (546)
Q Consensus 197 ll~~~~~~g~~~~A~~~~~~m~ 218 (546)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00011 Score=57.43 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-------LF 298 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~ 298 (546)
...|..+...+...|++++|++.|++..+.. +.+...+..+..+|...|++++|.+.|++..+.. |+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3444555555555555555555555555543 3445555555555556666666666665555432 22 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 009025 299 VLTSLIQCYGKAQRTDDVVRAL 320 (546)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~~~ 320 (546)
.+..+..++...|+.+.|+..|
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 3444444444444444444333
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00011 Score=57.47 Aligned_cols=90 Identities=8% Similarity=-0.005 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC------HHH
Q 009025 191 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD------SWT 264 (546)
Q Consensus 191 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~ 264 (546)
...+..+...+.+.|++++|++.|++..+... .+...|..+..+|...|++++|++.|++..... +.+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 44555566666666666666666666665532 245666666666666666666666666666543 222 344
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 009025 265 FSSMITICSCRGKVSEAEA 283 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~ 283 (546)
+..+..++...|+.+.|..
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4444555555554444433
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.00055 Score=54.07 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 289 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 289 (546)
|+..|++..+... .+...+..+...|...|++++|+..|++..... +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444321 244455555555555555555555555555443 3344455555555555555555555555544
Q ss_pred H
Q 009025 290 E 290 (546)
Q Consensus 290 ~ 290 (546)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.40 E-value=0.0019 Score=48.07 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 195 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 195 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
..+...|.+.|++++|+..|++..+... .+...+..+...+...|++++|.+.|++...
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333334444444444444444333321 1233333444444444444444444444433
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.40 E-value=0.00045 Score=57.70 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=76.4
Q ss_pred hhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 97 TRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNF----------DGCLNVYEEMKAIGVKPNMITYNNLLDTM 166 (546)
Q Consensus 97 ~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 166 (546)
.|.+++++|++.++...+..+. ++..|+.+..++...+++ ++|+..|++.++.. +-+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3778899999999999987544 889999999999988765 48889998888874 23567888888888
Q ss_pred HhcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 167 GRAK-----------RPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 167 ~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
...| ++++|++.|++.++. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 8764 677788888877773 5665555544443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.0022 Score=47.72 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009025 226 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 305 (546)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 305 (546)
...+..+...+...|++++|+..|++..... +.+...+..+...|.+.|++++|...|++..+.... +...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 4556666667777777777777777776654 445666777777777777777777777776664321 3445555444
Q ss_pred HHH
Q 009025 306 CYG 308 (546)
Q Consensus 306 ~~~ 308 (546)
.+.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.37 E-value=0.0005 Score=57.38 Aligned_cols=35 Identities=9% Similarity=-0.133 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 276 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 276 (546)
+.+++|.+.++...+.. +.+...|..+..++...+
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~ 50 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELS 50 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhc
Confidence 33444444444444433 334444444444444443
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.36 E-value=0.0012 Score=52.06 Aligned_cols=79 Identities=9% Similarity=-0.070 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009025 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 323 (546)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 323 (546)
+|++.|++..+.. +.+...+..+...|...|++++|...|++..+... .+...|..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677888887765 56788899999999999999999999999887653 25778888889999999999999999887
Q ss_pred hh
Q 009025 324 PE 325 (546)
Q Consensus 324 ~~ 325 (546)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.15 E-value=0.0015 Score=50.22 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 192 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 192 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
..+..+..+|.+.|++++|++.|++..+.... +...|..+..+|...|++++|++.|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444433211 23344444444444444444444444433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.96 E-value=0.0041 Score=47.61 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
+...+..+...|...|++++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555556666666666666666666655543 33445555666666666666666666655543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.67 E-value=0.033 Score=53.29 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 009025 259 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 338 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 338 (546)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++... +.|...||.-.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5677777777777777788888888888888765 6777777777778888888888888888776 45777776554
Q ss_pred HHHHhcC
Q 009025 339 LNVMTQT 345 (546)
Q Consensus 339 l~~~~~~ 345 (546)
-+.....
T Consensus 350 ~~l~F~s 356 (372)
T 3ly7_A 350 ENGIFQT 356 (372)
T ss_dssp HHSSSCC
T ss_pred hCceeec
Confidence 4444443
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.62 E-value=0.0088 Score=45.30 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEA 291 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 291 (546)
..+.+.|++++|++.|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455555666666665555543 33444 5555555555666666666666655553
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.097 Score=56.65 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
...|..|...+.+.|+++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555555555555555555443
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.45 E-value=0.061 Score=58.26 Aligned_cols=47 Identities=9% Similarity=-0.096 Sum_probs=25.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 201 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (546)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34455666555554322 144556666666666666666666665543
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.40 E-value=0.0079 Score=59.77 Aligned_cols=85 Identities=8% Similarity=-0.060 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHH
Q 009025 135 GNFDGCLNVYEEMKAI---GVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN-----GL-SPN-WNTYASLLRA 200 (546)
Q Consensus 135 g~~~~A~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~ll~~ 200 (546)
|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.++. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6788888888877542 11222 357888888888888888888888887642 32 122 4678888888
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 009025 201 YGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~ 219 (546)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999888887764
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.38 E-value=0.062 Score=51.41 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=45.7
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 224 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
.+..+|.++...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 355666666655555677777777777766653 55666666666666677777777777666653 35555543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.32 E-value=0.011 Score=58.68 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 263 WTFSSMITICSCRGKVSEAEAMFNEMLEA-----GF-EPN-LFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 263 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
.+++.|..+|...|++++|..++++.++- |. .|+ ..+++.|...|...|++++|..+|++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45555666666666666666666555431 21 122 2345666666666666666666666554
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.29 E-value=0.0092 Score=45.18 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=32.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
..+.+.|++++|++.|++..+.... +.. .|..+..+|...|++++|++.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455556666666666665554321 344 5555666666666666666666666554
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.22 E-value=0.016 Score=57.54 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=49.9
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 009025 238 DVGYTDEAFEIFEDMKSS--ENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEA-----G-FEPN-LFVLTSLI 304 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~--~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li 304 (546)
+.|++++|+.++++..+. ....++ ..+++.|...|...|++++|+.++++.++- | -.|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 456666666666665532 111222 345666666666677777776666665531 1 1222 34566666
Q ss_pred HHHHhcCChhHHHHHHHHhh
Q 009025 305 QCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~m~ 324 (546)
..|...|++++|..++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 67777777777777666654
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.08 E-value=0.042 Score=54.54 Aligned_cols=93 Identities=10% Similarity=0.144 Sum_probs=66.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-CHHH
Q 009025 198 LRAYGRARYGEDTLSVYREMKEKG---MQL----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-----ENCQP-DSWT 264 (546)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~-~~~~ 264 (546)
+.-+.+.|++++|+.++++..+.. +.+ ...+++.+...|...|++++|+.++++.... |...| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444557788888888888877531 111 2467888888888888988888888876532 22133 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999888887664
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.85 Score=38.45 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=19.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 147 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 147 (546)
+.|+++.|.++.+.+ -+...|..|.......|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444444444444332 14444444444444444444444444443
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.44 E-value=1 Score=37.98 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=20.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 203 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
+.|+++.|.++.+++ -+...|..|.......|+++-|++.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444444444444333 13444444444444444444444444443
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.30 E-value=0.41 Score=35.71 Aligned_cols=46 Identities=4% Similarity=-0.109 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
++|..++++..+.... +......+...+.+.|++++|+..|+++.+
T Consensus 26 ~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444443221 334444444444444444444444444443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.29 E-value=0.11 Score=42.70 Aligned_cols=78 Identities=10% Similarity=0.030 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEMLEAGFEP--NLFVLTSLIQCYGKAQRTDDVVRA 319 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~ 319 (546)
+.+-|.+....+ .++..+...+.-++++.+ +++++..+|++..+.+ .| +...+-.+.-+|.+.|++++|.+.
T Consensus 17 ~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 17 FEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 334444443333 344444444444555544 3445555555554432 11 223333344444555555555555
Q ss_pred HHHhhh
Q 009025 320 LNRLPE 325 (546)
Q Consensus 320 ~~~m~~ 325 (546)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.21 E-value=0.15 Score=38.16 Aligned_cols=64 Identities=16% Similarity=0.025 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 225 SVTLYNTLLAMCADVGY---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
|...+..+..++...++ .++|..+|++..... +-+......+...+.+.|++++|...|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433322 455555555555543 34444555555555555555555555555554
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.89 E-value=0.28 Score=45.04 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CC
Q 009025 242 TDEAFEIFEDMKSSENCQPD---SWTFSSMITICSC-----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA-QR 312 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~ 312 (546)
...|...+++..+.. |+ ...|..|...|.+ -|+.++|.+.|++.++.+..-+..++....+.++.. |+
T Consensus 179 l~~A~a~lerAleLD---P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLW---PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhC---CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 456777777777653 44 5677788888877 488888888888888755433467777777777774 88
Q ss_pred hhHHHHHHHHhhhCCCC--CCHHHHH
Q 009025 313 TDDVVRALNRLPELGIT--PDDRFCG 336 (546)
Q Consensus 313 ~~~A~~~~~~m~~~~~~--p~~~t~~ 336 (546)
.+++.+.+++.+..... |+....+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888888876655 5544333
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.70 E-value=0.36 Score=36.77 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 227 TLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
..+..+..+|.+.|++++|..++++..+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.51 E-value=0.21 Score=38.11 Aligned_cols=65 Identities=9% Similarity=-0.079 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 184 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 184 (546)
+...+..|...+.+.|++..|...|+...+.- -.+...++..|..++.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44555566666666667777666666654420 012344555555556666666666666655554
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.37 E-value=1.5 Score=34.83 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=82.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009025 134 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 213 (546)
Q Consensus 134 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 213 (546)
.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-+. .|. ..+|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 45566666666665542 23444444444333334444444444333221 111 245666666655
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009025 214 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 293 (546)
Q Consensus 214 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 293 (546)
+-.+-. +....+..+..+...|+-|.-.+++.++.... +|+......+..+|.+.|+..+|.+++.+..+.|+
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 544322 34556667777788888888888888864433 67777888888888888888888888888887776
Q ss_pred C
Q 009025 294 E 294 (546)
Q Consensus 294 ~ 294 (546)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.33 E-value=0.44 Score=39.16 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=38.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRAR---YGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
+++-|.+..+.|. ++..+.-.+.-++++.+ +.++++.+|++..+.+ .| ....+-.+.-+|.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444333 34444444455555554 3445555555555442 11 2233334444555556666666666
Q ss_pred HHHHhC
Q 009025 250 EDMKSS 255 (546)
Q Consensus 250 ~~m~~~ 255 (546)
+.+.+.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555553
No 229
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=94.29 E-value=0.11 Score=37.94 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=50.0
Q ss_pred eecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009025 442 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWFL 520 (546)
Q Consensus 442 ~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~l~~~f~~~~~~~G~~~ 520 (546)
.+++|++...+|...+..++.............+ .+.|+||.|.|+... .-++..+...|.+-.-.|. ..|.|.+.
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~-~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~--e~n~G~l~ 78 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKP-YLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFS--EIKPGCLK 78 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCC---------CHHHHHHHHHHHTTCCEE--EEETTEEE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCce-EEEEEECCCCCCCCCcchHHHHHHHHHHhCCCcee--eCCCEEEE
Confidence 3689999999999998888766543222212233 588999999998542 2389999999998775554 34888886
Q ss_pred E
Q 009025 521 T 521 (546)
Q Consensus 521 ~ 521 (546)
.
T Consensus 79 V 79 (82)
T 3fau_A 79 V 79 (82)
T ss_dssp E
T ss_pred E
Confidence 5
No 230
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=93.67 E-value=0.4 Score=36.00 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=57.4
Q ss_pred eeecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009025 441 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWF 519 (546)
Q Consensus 441 ~~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~l~~~f~~~~~~~G~~ 519 (546)
..+++|++....|...+..++.............+ .+.|+||.|.|+... .-|+..+...|.+..-.|. ..+.|.+
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~-~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~--egg~Ga~ 85 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKP-YLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFS--EIKPGCL 85 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCS-EEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE--CCSTTCE
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCe-EEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccc--cCCCcEE
Confidence 35799999999999999988876653333222233 689999999998654 3489999999999776653 3467777
Q ss_pred EE
Q 009025 520 LT 521 (546)
Q Consensus 520 ~~ 521 (546)
+.
T Consensus 86 ~V 87 (96)
T 2d9i_A 86 KV 87 (96)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.26 E-value=0.66 Score=42.59 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhCCCccC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CC
Q 009025 101 NVEMAFGLYDRARNEKWRID---PNAFSTLIKLYGTA-----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA-KR 171 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~ 171 (546)
.+..|+.++++..+. .|+ -..|..|...|.+. |+.++|.+.|++.++.+..-+..++......+++. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 455666666666664 233 44677777777773 77777777777777653211356666666666663 77
Q ss_pred hhHHHHHHHHHHHCCCC--CCHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLS--PNWNTYA 195 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~--p~~~~~~ 195 (546)
.+++.+.+++.+..... |+....+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 77777777777776544 5443333
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.23 E-value=1.6 Score=35.54 Aligned_cols=102 Identities=9% Similarity=0.089 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhcCChhHHHHHHHHHHHCC
Q 009025 120 DPNAFSTLIKLYGTAGNF------DGCLNVYEEMKAIGVKPNMI-TYNNLLD------TMGRAKRPWQVKTIYKEMTDNG 186 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~-~~~~ll~------~~~~~g~~~~a~~~~~~m~~~g 186 (546)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...+. .+...+|.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 666676666666666776 6677777766653 344320 0000000 0122356666666666665532
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009025 187 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223 (546)
Q Consensus 187 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 223 (546)
-.- ...|......-.+.|+++.|.+++...+..+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222 445555555556666666666666666665544
No 233
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=92.66 E-value=0.42 Score=38.49 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=57.0
Q ss_pred eeecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009025 441 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWF 519 (546)
Q Consensus 441 ~~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~l~~~f~~~~~~~G~~ 519 (546)
..++|+++....|...+..++.............+ .+.|+||.|.|+... .-|+..+...|.+..-.|.+ .+.|.+
T Consensus 54 ~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~-~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e--~g~G~~ 130 (135)
T 2vkc_A 54 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKP-YLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE--IKPGCL 130 (135)
T ss_dssp TEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCS-EEEEECCSCSSSCCSCCTHHHHHHHHHHTTTCEEEE--CSTTEE
T ss_pred ceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCe-EEEEEECCCcCCCCCCchHHHHHHHHHhcCCCceee--CCCCeE
Confidence 35799999999999999888876543332222233 689999999998654 34899999999987755543 367777
Q ss_pred EE
Q 009025 520 LT 521 (546)
Q Consensus 520 ~~ 521 (546)
+.
T Consensus 131 ~V 132 (135)
T 2vkc_A 131 KV 132 (135)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.12 E-value=9.2 Score=41.35 Aligned_cols=251 Identities=10% Similarity=-0.007 Sum_probs=139.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHHHh
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGV--K-----PNMITYNNLLDTMGR 168 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~~~~~ll~~~~~ 168 (546)
..|+.++++.+++.....+...+.. .-..+.-+....|..+++.+++.......- . +....-.++.-+++-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 5677788888777665421012333 333444455566766678887777654310 0 111122223333333
Q ss_pred cCC-hhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH--HHHHhcCC
Q 009025 169 AKR-PWQVKTIYKEMTDNGLSPNWN----TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL--AMCADVGY 241 (546)
Q Consensus 169 ~g~-~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li--~~~~~~g~ 241 (546)
.|. -+++.+.+..++... +.. .--+|...|.-.|+.+....++..+.+.. +......+. -++...|+
T Consensus 466 ~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 343 245566666665532 222 12233344556788787788887776542 233333333 44457899
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 242 TDEAFEIFEDMKSSENCQPDSWTFS---SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 318 (546)
Q Consensus 242 ~~~A~~~~~~m~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 318 (546)
.+.+..+++.+.... .|.. -|. ++.-+|+..|+.....+++..+.... ..++...-.+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~~--dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLASD--ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHCS--CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhCC--CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 999999998888643 2322 232 34556778889888888998888641 1123323333334445677777778
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHHH
Q 009025 319 ALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLVECVEK 359 (546)
Q Consensus 319 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~a~~~~~~~~~ 359 (546)
++..+.+.+ .|...--..+.-+....|. .++...+..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 877666543 4444433344444444444 778887777764
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.95 E-value=0.85 Score=48.20 Aligned_cols=127 Identities=9% Similarity=0.027 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc------CCC-cCH----
Q 009025 160 NNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY-GEDTLSVYREMKEK------GMQ-LSV---- 226 (546)
Q Consensus 160 ~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~------g~~-~~~---- 226 (546)
..++..+...++ .+.|..+|+++.+.....+.....++|..+.+.++ --+|.+++.+..+. ... .+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344454555555 47788888888775322222223334444433332 22455555444321 111 111
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 227 ------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 288 (546)
Q Consensus 227 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 288 (546)
.....=...|...|+++.|+++-++....- +-+..+|..|...|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222355667888999999988888753 556888999999999999999998888776
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.89 E-value=11 Score=37.35 Aligned_cols=190 Identities=7% Similarity=0.055 Sum_probs=109.2
Q ss_pred cCCHHHHHHHHHHHHh-----CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----Hh
Q 009025 99 AGNVEMAFGLYDRARN-----EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTM----GR 168 (546)
Q Consensus 99 ~g~~~~A~~l~~~~~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~ 168 (546)
.|+++.|++.+-.+.+ .+..-.......++..|.+.|+++...+.+..+... |..+.. -..++..+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3678888877765553 223445677888999999999999988877766543 322222 22333322 22
Q ss_pred cCChhHH--HHHHHHHHH--CC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcC---HHHHHHHHHH
Q 009025 169 AKRPWQV--KTIYKEMTD--NG-LSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLS---VTLYNTLLAM 235 (546)
Q Consensus 169 ~g~~~~a--~~~~~~m~~--~g-~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~---~~~~~~li~~ 235 (546)
....+.- ..+.+.... .| +-. .......|...|...|++.+|.+++..+... |.... ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2322221 111111110 01 111 1233456777888888888888888877532 21111 2456666777
Q ss_pred HHhcCCHHHHHHHHHHHHh---CCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 236 CADVGYTDEAFEIFEDMKS---SENCQPD--SWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~---~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
|...+++..|..+++++.. .....|+ ..-+...+..+...+++.+|...|.+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888888888888777532 1111222 23456667777777888887777766653
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.13 E-value=4.9 Score=32.03 Aligned_cols=141 Identities=12% Similarity=0.028 Sum_probs=82.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009025 166 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 245 (546)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 245 (546)
..-.|..+++.++..+.... .+..-||.+|--....-+-+-..++++.+-. ..|. ...|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHH
Confidence 34456777777777776653 2455566555544444454444444444322 1222 123444444
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 246 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 246 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
...+-.+ ..+..-+...++.+...|+-+.-.+++..+.. +-.|+....-.+..+|.+.|+..+|.+++.+.-+
T Consensus 81 i~C~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 81 VECGVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4444333 22334455666777777777777777777533 2346677777777888888888888888877777
Q ss_pred CCCC
Q 009025 326 LGIT 329 (546)
Q Consensus 326 ~~~~ 329 (546)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 7654
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.02 E-value=1.9 Score=35.04 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009025 240 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295 (546)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 295 (546)
+++++|.++|+.+.+.. +--...|......-.+.|++..|.+++.+.+..+..|
T Consensus 74 ~D~d~aR~vy~~a~~~h--KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC--KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHC--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56777777777775542 3336666666666667777777777777777665543
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.95 E-value=2.3 Score=33.47 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHhhhCCCCC--CHHHHHHHHHHHhcCCH-HH
Q 009025 276 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD---VVRALNRLPELGITP--DDRFCGCLLNVMTQTPK-EE 349 (546)
Q Consensus 276 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~-~~ 349 (546)
..+..+.+-|.+....|. ++..+-..+..++.++....+ ++.+++++.+.+ .| .....-.+.-++.+.|+ ++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334445555555544443 566666666666666665554 666666666542 12 11233345556666666 77
Q ss_pred HHHHHHHHHHcCCChhHH
Q 009025 350 LGKLVECVEKSNSKLGYV 367 (546)
Q Consensus 350 a~~~~~~~~~~~~~~~~~ 367 (546)
|.+.++.+.+..|.+..+
T Consensus 93 A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 777777777777765543
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.90 E-value=2.5 Score=33.34 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=11.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 009025 232 LLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
|.-++.+.|++++|.++++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444455555555555555444
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.69 E-value=6 Score=42.74 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=71.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHHhcC
Q 009025 236 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF-VLT---SLIQCYGKAQ 311 (546)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~---~li~~~~~~g 311 (546)
+.-.|+-+....++..+.+.. .-+..-+..+.-++...|+.+.+..+++.+... .+.. -|. ++.-+|+..|
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSC
T ss_pred hcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCC
Confidence 334566666666666655432 112222223333344667777777777776652 2222 222 2334566667
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHH--HHhcCCH-HHHHHHHHHHHHcCCChhH--HHHHHHHhhhhhcchHHHHH
Q 009025 312 RTDDVVRALNRLPELGITPDDRFCGCLLN--VMTQTPK-EELGKLVECVEKSNSKLGY--VVKLLLEEQDIEGDFKKEAT 386 (546)
Q Consensus 312 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~--~~~~~g~-~~a~~~~~~~~~~~~~~~~--~~~~L~~~~~~~g~~~~~A~ 386 (546)
+.....+++..+.+. ++..+-...+- ++...|. +.+.++++.+.+....... +.-.||..+...+ ..++.
T Consensus 575 n~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~--~~~ai 649 (963)
T 4ady_A 575 NNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG--LQSAI 649 (963)
T ss_dssp CHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC--CHHHH
T ss_pred CHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC--cHHHH
Confidence 766666677776643 23322222222 3333444 4444444433332221111 1133444333333 25666
Q ss_pred HHHHhcccCcc
Q 009025 387 ELFNSISKDVK 397 (546)
Q Consensus 387 ~~~~~~~~~~~ 397 (546)
+.+..+..+++
T Consensus 650 d~L~~L~~D~d 660 (963)
T 4ady_A 650 DVLDPLTKDPV 660 (963)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHccCCC
Confidence 66666655443
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.48 E-value=7.7 Score=41.00 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhC------CCCCCCHH-
Q 009025 193 TYASLLRAYGRARY-GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKSS------ENCQPDSW- 263 (546)
Q Consensus 193 ~~~~ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------~~~~~~~~- 263 (546)
....++..+...++ .+.|..+|+++......-+......+|..+...+ +--+|.+++.+..+. .....+..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44556666666666 5889999999988743222222333444433333 223455555554321 10012211
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 264 ---------TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 264 ---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
....=.+.+...|+++.|+++-++....-. -+..+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112224457789999999999999987532 258899999999999999999999998874
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.30 E-value=14 Score=34.56 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHHHCCCCCCHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV----KTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a----~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...| .-+++-+.+.++++|.....-|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566667888999999998865422 122334444333 33345555667888888888888
Q ss_pred HHHHhcCChH-HHHHHHHHHHH----cC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 199 RAYGRARYGE-DTLSVYREMKE----KG--MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 199 ~~~~~~g~~~-~A~~~~~~m~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
..+.....-+ .=.++.++++. .| ..-|......+...|.+.+++.+|+..|- . |. .+....|..++--
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~-~~s~~~~a~mL~e 176 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GT-KESPEVLARMEYE 176 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SC-TTHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cC-CchHHHHHHHHHH
Confidence 8887665422 22334444432 22 33467778888899999999999988883 2 31 3334666555554
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 272 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 272 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
+...+...++- ...-.+ +-.|.-.++...|..+|+.+.
T Consensus 177 w~~~~~~~e~d--------------lfiaRa-VL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 177 WYKQDESHTAP--------------LYCARA-VLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTSCGGGHH--------------HHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCccHH--------------HHHHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence 44443322221 111122 223455667777776665544
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.95 E-value=2.1 Score=41.66 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-----hCCCCCCHHHHHH
Q 009025 266 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-----ELGITPDDRFCGC 337 (546)
Q Consensus 266 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~t~~~ 337 (546)
..++..+...|+.++|...+..+..... .+...|..+|.+|.+.|+..+|++.|+++. +.|+.|...+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445556666666666666666654332 255566666666666666666666666553 3477777765443
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.69 E-value=16 Score=34.27 Aligned_cols=25 Identities=4% Similarity=-0.137 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 402 NCLIDLCVNLNLLENACKLLELGLT 426 (546)
Q Consensus 402 ~~li~~~~~~g~~~~A~~~~~~m~~ 426 (546)
.-.+--|.-.|+...|..+|+...+
T Consensus 191 aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 191 ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344456677788888777766553
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.93 E-value=2.3 Score=41.24 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCcCHHHHH
Q 009025 158 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----KGMQLSVTLYN 230 (546)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 230 (546)
+...++..+...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34557778888999999998888887753 45788999999999999999999999987653 48998876543
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=85.28 E-value=0.011 Score=58.08 Aligned_cols=261 Identities=11% Similarity=0.032 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009025 120 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 199 (546)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 199 (546)
.+.+|..|..+..+.++..+|++-|-+ .-|...|..++.++.+.|.+++-.+.+...++..- +...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 556788888888888888888776522 23556788888888899999888888877666532 3445567888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 009025 200 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 279 (546)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 279 (546)
+|++.++..+-++++. .|+..-...+.+-|...|.++.|.-+|..+..-. -|...+.+.|++.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~a----------kLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG----------RLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCT----------TTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHH----------HHHHHHHHHHHHH
Confidence 8988888766444332 2566666777888888888888877777654321 1222333444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 009025 280 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 358 (546)
Q Consensus 280 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~ 358 (546)
.|.+.-++ .-++.||-.+-.+|...+++.-|.-.--.++ +.||. ...++.-|...|. ++...+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 44332211 1244555555556666655555444333332 11111 1123444455555 55555555554
Q ss_pred HcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCc----------cchhhHHHHHHHHhcCCHHHHH
Q 009025 359 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV----------KKAYCNCLIDLCVNLNLLENAC 418 (546)
Q Consensus 359 ~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~ 418 (546)
........+++-|+..|++-. .++-.+.++..-.+- ....|.-++-.|.+-.++|.|.
T Consensus 257 glErAHmGmFTELaILYsKY~--PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GLERAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TSTTCCHHHHHHHHHHHHSSC--TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CCCchhHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 444444445555555555543 233333333222111 2336888888888888887664
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.05 E-value=4 Score=30.49 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 219 (546)
.-+..+-++.+....+.|+..+..+.+++|-+.+++..|.++|+.++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444445554445555555555555555555555555555555443
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.98 E-value=23 Score=39.82 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=24.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009025 127 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182 (546)
Q Consensus 127 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 182 (546)
++..+...+.++-+.++.... +-+....-.+..++...|++++|.+.|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444455555555554443322 123333333445556666666666666443
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.68 E-value=28 Score=32.30 Aligned_cols=20 Identities=10% Similarity=-0.102 Sum_probs=13.3
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 009025 406 DLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 406 ~~~~~~g~~~~A~~~~~~m~ 425 (546)
--|.-.|+...|..+|+...
T Consensus 196 L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 34556677777777777654
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.72 E-value=13 Score=27.73 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444555555555566666666666666666666666666655543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.01 E-value=44 Score=32.80 Aligned_cols=189 Identities=10% Similarity=0.116 Sum_probs=119.4
Q ss_pred CChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----Hhc
Q 009025 135 GNFDGCLNVYEEMKAI-----GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAY----GRA 204 (546)
Q Consensus 135 g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~~ 204 (546)
|+++.|++.+-.+.+. +..-+......++..|...++++...+.+..+.+. |.. ......+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 5677787777665432 23456777888999999999999988877766543 332 22233444333 223
Q ss_pred CChHHHH--HHHHHHHH--cC-CCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHH
Q 009025 205 RYGEDTL--SVYREMKE--KG-MQL---SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITIC 272 (546)
Q Consensus 205 g~~~~A~--~~~~~m~~--~g-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~ 272 (546)
...+... .+.+.+.. .| +-. .......|...|...|++.+|.+++.++...-.-.-+ ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333211 11111110 11 111 2234566788899999999999999998643110112 34667788899
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 273 SCRGKVSEAEAMFNEMLE----AGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 273 ~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
...+++..|..+++++.. ....|+ ...+..++..+...+++.+|...|.+..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999988753 222222 23467777888889999999988887753
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.61 E-value=21 Score=40.05 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=88.2
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 174 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 174 (546)
.+.+.|..+.|..+..... -++..--.+..+|...|++++|.+.|++... |+..+.... .....
T Consensus 821 ~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~~ 884 (1139)
T 4fhn_B 821 KLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLRE 884 (1139)
T ss_dssp HHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHHH
T ss_pred HHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhcc
Confidence 3445666666666544332 3555556677889999999999999987532 221111000 00000
Q ss_pred HHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHHHHH
Q 009025 175 VKTIYKEMTDNGL--SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV----TLYNTLLAMCADVGYTDEAFEI 248 (546)
Q Consensus 175 a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~ 248 (546)
+..+..... ..-..=|..++..+-+.+.++.+.++-....+....-+. ..|..+.+.+...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 111111100 111233555666666666666666666555443211111 2466667777777777777777
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009025 249 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 281 (546)
Q Consensus 249 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 281 (546)
+-.+.... --...+..|+...+..|..+.-
T Consensus 961 L~~~pd~~---~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 961 LMVLSTTP---LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHSS---SCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHhCCCHH---HHHHHHHHHHHHHHhCCChhhh
Confidence 76666543 2345566666666666655443
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.56 E-value=13 Score=29.45 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009025 172 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 220 (546)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 220 (546)
.-+..+-++.+....+.|+..+..+.+++|-+.+++..|.++|+-++.+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3344555555555556666666666666666666666666666665543
No 255
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.26 E-value=33 Score=29.21 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHhcCC
Q 009025 225 SVTLYNTLLAMCADVGY 241 (546)
Q Consensus 225 ~~~~~~~li~~~~~~g~ 241 (546)
|...-...+.++.+.|+
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333344444444443
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.78 E-value=25 Score=27.81 Aligned_cols=67 Identities=9% Similarity=-0.137 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009025 259 QPDSWTFSSMITICSCRGK---VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.|+..+--.+.-++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444433 334555555555443211234444455556666666666666665554
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.07 E-value=23 Score=28.07 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 209 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 209 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
+..+-++.+...++.|+.....+.+.+|.+.+++..|.++|+-++.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444455555556666666666666666666666666666665544
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.63 E-value=29 Score=28.66 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 298 FVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
..--.+..+|.+.|++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333446677788888888888777654
No 259
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=73.22 E-value=54 Score=31.04 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCCHH
Q 009025 264 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR--TDDVVRALNRLPELGITPDDR 333 (546)
Q Consensus 264 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 333 (546)
....++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+.+.|+-+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3567888888999999999999888642221 23344555555554433 345677777777666554443
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.88 E-value=20 Score=35.10 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 182 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 182 (546)
++..+...|.+.|+++.|.++|.++.... ..--...+-.++..+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445555555555555555555554431 1112234444444555555555555444443
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.41 E-value=34 Score=27.05 Aligned_cols=73 Identities=4% Similarity=-0.176 Sum_probs=51.4
Q ss_pred CCccCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009025 116 KWRIDPNAFSTLIKLYGTAGNF---DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 190 (546)
Q Consensus 116 g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 190 (546)
+..|++.+--.+.-++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|+++.|.+..+.+++. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 3466777777777777777654 468888888877642123445556777888999999999998888874 454
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.41 E-value=29 Score=25.85 Aligned_cols=85 Identities=12% Similarity=0.014 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
..++|..|-+.+...|. ...+--+-+..+...|++++|..+.+.+ +.||...|-+|-. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555555432 1111112233455666666666555433 2456666655543 35566666666666
Q ss_pred HHHhCCCCCCCHHHH
Q 009025 251 DMKSSENCQPDSWTF 265 (546)
Q Consensus 251 ~m~~~~~~~~~~~~~ 265 (546)
++...| .|....|
T Consensus 94 ~la~sg--~p~~q~F 106 (116)
T 2p58_C 94 RLARSQ--DPRIQTF 106 (116)
T ss_dssp HHTTCC--CHHHHHH
T ss_pred HHHhCC--CHHHHHH
Confidence 666555 4444443
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.20 E-value=43 Score=32.72 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKG--MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (546)
+...+...|.+.|+++.|.+.|.++...- ..--...+-.+|+.+...+++..+...+++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56677888888888888888888887642 222345667777778888888888877777643
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=70.34 E-value=26 Score=28.91 Aligned_cols=56 Identities=7% Similarity=-0.133 Sum_probs=27.4
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhC-CCccCH-------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 009025 92 EKSYDTRAGNVEMAFGLYDRARNE-KWRIDP-------NAFSTLIKLYGTAGNFDGCLNVYEEM 147 (546)
Q Consensus 92 ~~~~~~~~g~~~~A~~l~~~~~~~-g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 147 (546)
.+..+...|.++.|+-+.+.+... +..+++ .++..+.+++...|+|.+|...|++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 334444556666666555554331 112221 13344455555566666666666654
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.31 E-value=35 Score=29.18 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009025 241 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295 (546)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 295 (546)
...++.++|..|...|+..--..-|......+...|++.+|.++|+.-++.+-+|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3556666666666665544455556666666666666666666666666655554
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.11 E-value=28 Score=25.90 Aligned_cols=78 Identities=8% Similarity=-0.045 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 250 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (546)
..++|..|-+.+...|. ...+--+-+..+...|++++|..+.+.+ +.||...|-+|-. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555554432 1111112223445556666665544332 2456555554433 35555666666665
Q ss_pred HHHhCC
Q 009025 251 DMKSSE 256 (546)
Q Consensus 251 ~m~~~~ 256 (546)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555555
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.77 E-value=37 Score=25.30 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 285 (546)
..++|..+-+-+...+. ...+--+-+..+...|++++|..+.+.+ +-||...|.+|.. .+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 34455555555444432 1111122233455556666665555433 2455555555544 2445555555555
Q ss_pred HHHHH
Q 009025 286 NEMLE 290 (546)
Q Consensus 286 ~~m~~ 290 (546)
.++..
T Consensus 93 ~~la~ 97 (116)
T 2p58_C 93 NRLAR 97 (116)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 44443
No 268
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=65.71 E-value=0.0028 Score=62.03 Aligned_cols=230 Identities=16% Similarity=0.170 Sum_probs=147.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009025 98 RAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 177 (546)
Q Consensus 98 ~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 177 (546)
+.|++.+|++.|-+. -|+..|..+|.+..+.|.+++-+..+.-.++.. .+..+=+.|+-+|++.+++.+.++
T Consensus 66 ~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEe 137 (624)
T 3lvg_A 66 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 137 (624)
T ss_dssp TSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTS
T ss_pred ccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHH
Confidence 445666666555221 266778888888888888888888777665543 233444578888888888766444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------------------CCcCHHHHHHHHHHHH
Q 009025 178 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG--------------------MQLSVTLYNTLLAMCA 237 (546)
Q Consensus 178 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--------------------~~~~~~~~~~li~~~~ 237 (546)
++ -.||..-...+.+-|...|.++.|.-+|..+.... -.-++.||-.+-.+|.
T Consensus 138 fl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 138 FI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp TT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred HH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 33 12555555666677777777776666654432110 0125678888888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 317 (546)
..+++.-|.-.--.++-. +| -...|+..|-..|.+++-+.+++.-... -+.....|+-|.-.|++- +.++..
T Consensus 211 d~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlm 282 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMR 282 (624)
T ss_dssp HSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHH
T ss_pred CchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHH
Confidence 998888776655554422 21 1235677888899999988888876631 235678888888888775 455555
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 009025 318 RALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 356 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~ 356 (546)
+-++..-.+ + | .-.++++|.+... .++.-++..
T Consensus 283 EHlklf~sr-i--N---ipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 283 EHLELFWSR-V--N---IPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHTTSSSS-S--C---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHh-c--c---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 554443321 1 1 1137889988888 888877654
No 269
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=64.79 E-value=12 Score=34.74 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCCH
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR--TDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~ 332 (546)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 457788888889999999888888642111 12344455555554432 34566677777665554433
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.79 E-value=1.4e+02 Score=30.75 Aligned_cols=310 Identities=8% Similarity=0.045 Sum_probs=158.2
Q ss_pred chhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009025 94 SYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 173 (546)
Q Consensus 94 ~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 173 (546)
....+.|+++.+..+...+....+. .-..|..|...+ ......+...++++-.. .+.....-+..+..+++.+++.
T Consensus 14 ~~a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 14 KQAWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHH
Confidence 3344778888887776665443221 112343333222 12234444444433221 1112233455666777788877
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH--HHHHHHH
Q 009025 174 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE--AFEIFED 251 (546)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~ 251 (546)
....++.. .+.+...-.....+....|+..+|......+-..|-. .....+.++..+.+.|.+.. ..+-++.
T Consensus 90 ~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~ 163 (618)
T 1qsa_A 90 GLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRL 163 (618)
T ss_dssp HHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 76664432 2335555556677777888877777777666655432 34556667777776664432 3333344
Q ss_pred HHhCCC----------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChhHHH
Q 009025 252 MKSSEN----------CQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV---LTSLIQCYGKAQRTDDVV 317 (546)
Q Consensus 252 m~~~~~----------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~ 317 (546)
+...|. +.++.. ....++..+.+- ..+..... . ..++... +..-+.-+.+. +.+.|.
T Consensus 164 al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar~-d~~~A~ 234 (618)
T 1qsa_A 164 AMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFAR---T--TGATDFTRQMAAVAFASVARQ-DAENAR 234 (618)
T ss_dssp HHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHH-CHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHh---c--cCCChhhHHHHHHHHHHHHhc-CHHHHH
Confidence 444331 011111 111111111111 11111111 0 1223222 22223333443 778999
Q ss_pred HHHHHhhhCCCCCCHH----HHHHHHHHHhcCC-HHHHHHHHHHHHHcCCChhHHHHHHHHhhhhhcchHHHHHHHHHhc
Q 009025 318 RALNRLPELGITPDDR----FCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 392 (546)
Q Consensus 318 ~~~~~m~~~~~~p~~~----t~~~ll~~~~~~g-~~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~ 392 (546)
..|....+.. ..+.. ....+.......+ ..++...+........+.. .....+....+.|+ .+.|...|+.|
T Consensus 235 ~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d-~~~a~~~~~~l 311 (618)
T 1qsa_A 235 LMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGD-RRGLNTWLARL 311 (618)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTC-HHHHHHHHHHS
T ss_pred HHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCC-HHHHHHHHHHc
Confidence 9998886533 22332 2334444445556 4677777776554443333 23333333334564 48899999998
Q ss_pred ccCc-c-chhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 393 SKDV-K-KAYCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 393 ~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
...+ . ....--+..++.+.|+.++|..+|+.+.
T Consensus 312 ~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 312 PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7643 2 1112235567788999999999998874
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.43 E-value=36 Score=25.31 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009025 206 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 285 (546)
Q Consensus 206 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 285 (546)
..++|..+-+-+...+. ...+--+-+..+...|++++|..+.+.+ +-||...|.+|.. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 34555555555554432 1222222234456666666666555433 3566666665544 3556666666555
Q ss_pred HHHHHc
Q 009025 286 NEMLEA 291 (546)
Q Consensus 286 ~~m~~~ 291 (546)
.++...
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 555543
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.09 E-value=1e+02 Score=28.44 Aligned_cols=167 Identities=13% Similarity=0.054 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH----HHHHHHHHCCCCCCHHHHHHHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK----TIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~----~~~~~m~~~g~~p~~~~~~~ll 198 (546)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|- -+.+-+.+.+.+++.....-++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45556666888888999888865432 1223345544433 3455566677888888888888
Q ss_pred HHHHhcCChH-HHHHHHHHHHH----cC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009025 199 RAYGRARYGE-DTLSVYREMKE----KG--MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 271 (546)
Q Consensus 199 ~~~~~~g~~~-~A~~~~~~m~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 271 (546)
..+......+ .=.+++++++. .| ...|......+...|.+.|++.+|+..|-.-. .-+...+..++--
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-----~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-----HDSMIKYVDLLWD 174 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-----HHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CccHHHHHHHHHH
Confidence 8876644222 22344444442 22 22377888888899999999999888775211 1134455555544
Q ss_pred HHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009025 272 CSCR---GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 324 (546)
Q Consensus 272 ~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 324 (546)
+... |...++--++-+ .+-.|.-.|+...|..+|+...
T Consensus 175 w~~~~~~~~~~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAEFFSR---------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTCCCHHHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 4443 443332222111 1223445677777777776654
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.41 E-value=62 Score=27.66 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 009025 137 FDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 189 (546)
Q Consensus 137 ~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 189 (546)
..++.++|..|...||-- -...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334444454444433321 22334444444444445555555444444444333
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=59.57 E-value=25 Score=31.72 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=26.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009025 237 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 290 (546)
.+.|.+++|++....-++.. +-|...-..|+..+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555555544443 44555555555555555555555555554444
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.09 E-value=81 Score=26.61 Aligned_cols=169 Identities=11% Similarity=0.028 Sum_probs=105.5
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
++...-...+..+.+.|.. .+...+..+.. .+|...-...+.++.+.++.+.. ..+..+.. .+|..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 5777777788888888874 44444445554 36777777888888888875444 34444443 36777778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
.++.+.++.+ +...+..+.+ .++...-...+.++.+.|..+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-
Confidence 8888888754 3444444443 347777777788888887754 4445555543 4566666677777777776
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009025 279 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 308 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 308 (546)
.++...+..+.+. ++...-...+.++.
T Consensus 173 ~~~~~~L~~~l~d---~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 173 ERVRAAMEKLAET---GTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3455555555442 44444444444443
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.58 E-value=33 Score=28.29 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 295 (546)
+.++|..|...|+..--..-|......+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344455554444433334444444444444555555555555444444333
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.26 E-value=1.3e+02 Score=28.79 Aligned_cols=295 Identities=10% Similarity=0.008 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCC-hhHHHHHHHHHH----HCCC-CCCHH
Q 009025 123 AFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKP---NMITYNNLLDTMGRAKR-PWQVKTIYKEMT----DNGL-SPNWN 192 (546)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~----~~g~-~p~~~ 192 (546)
+...|...|.+.|+.++..+++...... +.-+ ....-..+++.+....+ .+.-.++..+.+ ...- -....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777778777777777665432 0011 22345566666655432 233333333332 2110 00011
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCCHHHHH
Q 009025 193 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFS 266 (546)
Q Consensus 193 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 266 (546)
.=.-++..|...|++.+|.+++.++.+.--..| ...|-.-+..|...+++.++...+........ +.++.....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 223567788888888888888877765311111 23455566777788888888887776643210 013322221
Q ss_pred ----HHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChhHHHHHHH-HhhhCCCCCCHHH
Q 009025 267 ----SMITICS-CRGKVSEAEAMFNEMLEAGFEPN------LFVLTSLIQCYGKAQRTDDVVRALN-RLPELGITPDDRF 334 (546)
Q Consensus 267 ----~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~t 334 (546)
.-..++. ..+++..|...|-+..+.--... ...|..|.. .. .++..+.-.++. .....-..|+...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhccccccccCCccHHH
Confidence 1223345 67888888777766542100111 112322222 22 122222222221 1111112355555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---cCCChhHHHHHHHHhhhhhcchHHHHHHHHHhcccCccchhhHHHHHHHHhc
Q 009025 335 CGCLLNVMTQTPKEELGKLVECVEK---SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNL 411 (546)
Q Consensus 335 ~~~ll~~~~~~g~~~a~~~~~~~~~---~~~~~~~~~~~L~~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 411 (546)
+..++.++....-.+...+++.... .++.....+..|.+. ..+.++ ..+......+....|...+.-
T Consensus 259 l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~------Ir~~~L---~~i~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 259 MKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT------MLEQNL---CRIIEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH------HHHHHH---HHHHTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH------HHHHHH---HHHhHhhceeeHHHHHHHHCc-
Confidence 6666666665544444443333211 111111111111110 112221 122223345566666666543
Q ss_pred CCHHHHHHHHHHHHhcccc
Q 009025 412 NLLENACKLLELGLTLEVY 430 (546)
Q Consensus 412 g~~~~A~~~~~~m~~~g~~ 430 (546)
..+++...+-+|+..|..
T Consensus 329 -s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp -CHHHHHHHHHHHHHTTSS
T ss_pred -CHHHHHHHHHHHHHCCCe
Confidence 678899999999877754
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.94 E-value=39 Score=26.55 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCC
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR--TDDVVRALNRLPELGITP 330 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 330 (546)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.+. .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345666666677777777777666431111 12333444444444332 344555666665555443
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.08 E-value=37 Score=27.55 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009025 245 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295 (546)
Q Consensus 245 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 295 (546)
+.++|..|...|+..--..-|......+...|++.+|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555554433344444445555555555555555555555444443
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=55.51 E-value=1.9e+02 Score=29.87 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=48.6
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHcCCChhHHHHHHHHhhhhh--------------cchHHHHHHHHHhcccCc-------
Q 009025 339 LNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE--------------GDFKKEATELFNSISKDV------- 396 (546)
Q Consensus 339 l~~~~~~g~-~~a~~~~~~~~~~~~~~~~~~~~L~~~~~~~--------------g~~~~~A~~~~~~~~~~~------- 396 (546)
..-+...|. ++|..+|+-..+-+.-...+-..|....... .+....|..+.+.....+
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 335556677 8888877654322211111113333333211 134556666655543321
Q ss_pred --cchhhHHHHHH-----HHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 397 --KKAYCNCLIDL-----CVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 397 --~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
+..++..|++. +...|+++.|++.+++ .++.|..
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~---L~llPl~ 570 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMEL---LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---TSCSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCCC
Confidence 23356555543 3788999999887776 4566653
No 281
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=55.18 E-value=31 Score=24.64 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=46.5
Q ss_pred eecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccchhHHHHHHHHhhhcC--CCCCCCCCC---c
Q 009025 442 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELN--APFHDSPDK---V 516 (546)
Q Consensus 442 ~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~--~~f~~~~~~---~ 516 (546)
.++++++....|...+..++ .++...| ++ .+.|.+|.|. .-|++.+...|.+-. ..|..++.+ .
T Consensus 6 ~lDLhG~~~~eA~~~l~~fl---~~a~~~g--~~-~v~IIHGkG~-----GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~ 74 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQAL---EEARALG--LS-TLRLLHGKGT-----GALRQAIREALRRDKRVESFADAPPGEGGH 74 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHH---HHHHHTT--CS-EEEEECCSTT-----SHHHHHHHHHHHHCTTEEEEEECCTTTTGG
T ss_pred EEECCCCCHHHHHHHHHHHH---HHHHHCC--CC-EEEEEECCCc-----hHHHHHHHHHHhcCCceeEEEEcCcccCCC
Confidence 57899999888887776655 4445555 33 5788888876 368999999998754 235555544 4
Q ss_pred ceEE
Q 009025 517 GWFL 520 (546)
Q Consensus 517 G~~~ 520 (546)
|..+
T Consensus 75 Gat~ 78 (83)
T 2zqe_A 75 GVTV 78 (83)
T ss_dssp GEEE
T ss_pred EEEE
Confidence 5544
No 282
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=53.72 E-value=23 Score=28.21 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=49.8
Q ss_pred eecccccchhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccch-hHHHHHHHHhhhcC--CCCCCCCC---C
Q 009025 442 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDK-GLASVFESHLKELN--APFHDSPD---K 515 (546)
Q Consensus 442 ~~~l~~~~~g~~~~a~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~l~--~~f~~~~~---~ 515 (546)
.++++++....|..++..++.. +...| + .++.|++|.|.++.... -|+..+...|.+.. .-|..++. +
T Consensus 49 ~LDLHG~~~~EA~~~L~~fL~~---a~~~g--~-r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG 122 (137)
T 3qd7_X 49 SLNLLRQPVEECRKMVFSFIQQ---ALADG--L-RNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGG 122 (137)
T ss_dssp EEECTTCCHHHHHHHHHHHHHH---HHHTT--C-SEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTG
T ss_pred EEECCCCCHHHHHHHHHHHHHH---HHHCC--C-CEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCC
Confidence 5799999998888888776643 44555 3 25889999999864432 48888888888754 23444443 3
Q ss_pred cceEE
Q 009025 516 VGWFL 520 (546)
Q Consensus 516 ~G~~~ 520 (546)
.|.++
T Consensus 123 ~Gat~ 127 (137)
T 3qd7_X 123 SGACY 127 (137)
T ss_dssp GGEEE
T ss_pred CEEEE
Confidence 45444
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.20 E-value=1.3e+02 Score=28.47 Aligned_cols=65 Identities=9% Similarity=0.150 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK--VSEAEAMFNEMLEAGFE 294 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 294 (546)
..+.+|.-|...|+.++|.+.++++..-. .....+...+..++-+.++ .+...+++..+...|+-
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~--fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTT--CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCc--chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 46788999999999999999999996321 1123344455555555443 45677888888876654
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.60 E-value=70 Score=25.04 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCC
Q 009025 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR--PWQVKTIYKEMTDNGLSP 189 (546)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p 189 (546)
...++.-|...|+.++|...++++..-.+ -...++..+..++-+.++ .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45678888888999999999988862211 123444555555555432 356777888887776543
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.57 E-value=16 Score=32.72 Aligned_cols=83 Identities=12% Similarity=0.018 Sum_probs=36.5
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCccCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhc
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWRIDPN---AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI--TYNNLLDTMGRA 169 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~ 169 (546)
..++.|+++....+++. |..++.. .-.+.+...+..|+.+ +++.+.+.|..++.. .-.+.+...+..
T Consensus 11 ~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 11 KAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHTTCHHHHHHHHHT----TCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc----CCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 44577777665555543 3322211 1112344445556654 344444555443321 111233333445
Q ss_pred CChhHHHHHHHHHHHCCCCC
Q 009025 170 KRPWQVKTIYKEMTDNGLSP 189 (546)
Q Consensus 170 g~~~~a~~~~~~m~~~g~~p 189 (546)
|+.+ +++.+.+.|..+
T Consensus 83 ~~~~----~v~~Ll~~g~~~ 98 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADV 98 (285)
T ss_dssp TCHH----HHHHHHHTTCCT
T ss_pred CCHH----HHHHHHHcCCCC
Confidence 5544 344444555444
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.18 E-value=36 Score=27.64 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCC
Q 009025 265 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR--TDDVVRALNRLPELGIT 329 (546)
Q Consensus 265 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 329 (546)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345666666666666666666665421111 12233344444444222 33455555555555444
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.71 E-value=16 Score=31.97 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=15.0
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCc
Q 009025 95 YDTRAGNVEMAFGLYDRARNEKWR 118 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~~~~g~~ 118 (546)
+.++.|+++.+..+++.+.+.|..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 445677777777777665555433
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.41 E-value=1e+02 Score=27.10 Aligned_cols=88 Identities=10% Similarity=0.070 Sum_probs=45.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009025 127 LIKLYGTAGNFDGCLNVYEEMKAI--GVKP----NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 200 (546)
Q Consensus 127 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 200 (546)
-++.+....++++|.+++++..+. +++. +.......+..-.....-.-+..+.+++ .. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 356777788888888888876542 2221 1111122222222222223334444444 22 3345555556667
Q ss_pred HHhcCChHHHHHHHHHH
Q 009025 201 YGRARYGEDTLSVYREM 217 (546)
Q Consensus 201 ~~~~g~~~~A~~~~~~m 217 (546)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 77777777777776544
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=46.57 E-value=2.6e+02 Score=28.69 Aligned_cols=266 Identities=10% Similarity=0.029 Sum_probs=127.0
Q ss_pred ccccCCCChhhhhhh--ccchhhhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009025 77 YIWVNPKSPRASKLK--EKSYDTRAGNVEMAFGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 154 (546)
Q Consensus 77 ~~~~~~~~~~~~~l~--~~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 154 (546)
|+-..|+.|....++ -+..+.+.+++...+..+.. .+.+...-.....+....|+..+|....+.+=..| ..
T Consensus 61 Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~ 134 (618)
T 1qsa_A 61 FVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS 134 (618)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC
T ss_pred HHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC
Confidence 333456666655552 23444566777766664443 13355555666777777788777777666665544 23
Q ss_pred CHHHHHHHHHHHHhcCChhH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------CCC
Q 009025 155 NMITYNNLLDTMGRAKRPWQ--VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK---------GMQ 223 (546)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~--a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---------g~~ 223 (546)
....+..++..+.+.|.+.. ..+=++.+...| +...-..|+... - .+.....+.+..+... ...
T Consensus 135 ~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~ 209 (618)
T 1qsa_A 135 QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTG 209 (618)
T ss_dssp CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSC
T ss_pred CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccC
Confidence 44566677777776665432 222223333322 111111111111 0 0000000001111110 001
Q ss_pred cCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 009025 224 LSVT---LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS----MITICSCRGKVSEAEAMFNEMLEAGFEPN 296 (546)
Q Consensus 224 ~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 296 (546)
++.. .+...+.-+.+. +.+.|...|....+.. ..+...... +.......+...++...+....... .+
T Consensus 210 ~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~ 284 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QS 284 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CC
T ss_pred CChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc--CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CC
Confidence 1111 111122233333 6778888887776544 223332222 2222333343556666666654432 33
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 009025 297 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 359 (546)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~a~~~~~~~~~ 359 (546)
.......+....+.|+++.|...|..|..... ....-.--+..++...|+ ++|..+|+.+..
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33333344444566888888888887765321 133334445556666777 777777776654
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.08 E-value=38 Score=29.52 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009025 244 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 295 (546)
Q Consensus 244 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 295 (546)
++.++|..|...|+..--..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555555434444455555555555555555555555555544444
No 291
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=44.73 E-value=2.3e+02 Score=27.61 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhC--------CCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-C---CCHHHHHHHHHHHHh
Q 009025 101 NVEMAFGLYDRARNE--------KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-K---PNMITYNNLLDTMGR 168 (546)
Q Consensus 101 ~~~~A~~l~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~---p~~~~~~~ll~~~~~ 168 (546)
..++...+++..... ++..+......++.. ..|+..+++.+++.+..... . ....+-.
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e-------- 235 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPE-------- 235 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHH--------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHH--------
Confidence 455666666666542 344566677766665 46888888888887754321 0 0011111
Q ss_pred cCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-
Q 009025 169 AKRPWQVKTIYKEMTDNGL---SPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY- 241 (546)
Q Consensus 169 ~g~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~---~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~- 241 (546)
.+++...... ..+...+.-++.++ .+.++.+.|+..+.+|.+.|..|....-..++.+.-..|.
T Consensus 236 ---------~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 236 ---------LLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp ---------HHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred ---------HHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 1112221110 01111222233443 3457888888888888888877766666666666666564
Q ss_pred ----HHHHHHHHHHHHhCC
Q 009025 242 ----TDEAFEIFEDMKSSE 256 (546)
Q Consensus 242 ----~~~A~~~~~~m~~~~ 256 (546)
...|...++-....|
T Consensus 307 ~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSC
T ss_pred ChhHHHHHHHHHHHHHHhC
Confidence 335566666666666
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.26 E-value=1.3e+02 Score=24.42 Aligned_cols=50 Identities=6% Similarity=0.080 Sum_probs=32.0
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 009025 175 VKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224 (546)
Q Consensus 175 a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~ 224 (546)
+.++|..|...|+-- -..-|..-...+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 666777776665533 24456666666666777777777777766665555
No 293
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.99 E-value=1.4e+02 Score=24.82 Aligned_cols=153 Identities=10% Similarity=0.021 Sum_probs=82.2
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
+|...-...+.++.+.|..+ +...+.++.. .++...-...+.++++.++.+... .+..+.. .++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~-~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVE-PLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHH-HHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHH-HHHHHHc---CCCHHHHHHHH
Confidence 46666666667777766533 3333333333 356666666677777777654333 3333333 25666666677
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 278 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (546)
.++.+.++.+ +...+..+.. .++...-...+.++.+.+..+ +...+..+.. .++..+-...+.++.+.|..
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCch
Confidence 7777766654 3333333332 235555566666666666533 3344444433 34555555666666666553
Q ss_pred HHHHHHHHHHH
Q 009025 279 SEAEAMFNEML 289 (546)
Q Consensus 279 ~~A~~~~~~m~ 289 (546)
++...+..+.
T Consensus 169 -~~~~~L~~~l 178 (201)
T 3ltj_A 169 -RVRAAMEKLA 178 (201)
T ss_dssp -HHHHHHHHHH
T ss_pred -hHHHHHHHHH
Confidence 3444444444
No 294
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=43.78 E-value=1.2e+02 Score=24.18 Aligned_cols=24 Identities=21% Similarity=-0.017 Sum_probs=11.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhh
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPE 325 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~ 325 (546)
.|.-++.+.|++++|.+..+.+++
T Consensus 82 yLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333444444555555444444444
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.82 E-value=61 Score=26.30 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCC
Q 009025 124 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR--PWQVKTIYKEMTDNGLSP 189 (546)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p 189 (546)
.+.++.-|...|+.++|...++++..-.+ ....++..+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45678888888999999999988853111 123444555555555332 456777787777766543
No 296
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=40.81 E-value=1.4e+02 Score=23.90 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=10.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 009025 233 LAMCADVGYTDEAFEIFEDMKS 254 (546)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~ 254 (546)
.-++.+.|++++|.++.+.+.+
T Consensus 84 Avg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 84 TIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344444444444444444444
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.03 E-value=25 Score=30.52 Aligned_cols=84 Identities=11% Similarity=0.037 Sum_probs=38.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHh
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMI--TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT--YASLLRAYGR 203 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~ 203 (546)
+...++.|+.+.+..+++.+.+.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 334455677777777776665555443321 1112333444556554 3344444554433211 1123333445
Q ss_pred cCChHHHHHHHH
Q 009025 204 ARYGEDTLSVYR 215 (546)
Q Consensus 204 ~g~~~~A~~~~~ 215 (546)
.|+.+-+..+++
T Consensus 89 ~~~~~~~~~Ll~ 100 (241)
T 1k1a_A 89 HRSPTCLRALLD 100 (241)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 566554444443
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.92 E-value=1.5e+02 Score=25.98 Aligned_cols=90 Identities=10% Similarity=0.045 Sum_probs=43.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009025 161 NLLDTMGRAKRPWQVKTIYKEMTDN--GLSP----NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 234 (546)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 234 (546)
--++.+....++++|.+++++..+. +++. +.......+..-.....-.-+..+.+++. . ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 3466777888888888888776542 2221 00111122222222222223333333332 2 224444455556
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 009025 235 MCADVGYTDEAFEIFEDMK 253 (546)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~ 253 (546)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 6666666666666665543
No 299
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.17 E-value=1.7e+02 Score=24.06 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=23.8
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 009025 140 CLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 189 (546)
Q Consensus 140 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 189 (546)
+.++|..|...||-- -...|......+-..|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555555444322 22344444444555555555555555555544444
No 300
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=36.96 E-value=47 Score=29.46 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=13.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccccCc
Q 009025 405 IDLCVNLNLLENACKLLELGLTLEVYTDI 433 (546)
Q Consensus 405 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 433 (546)
+....+.|+.+ +.+.+++.|..++.
T Consensus 257 l~~A~~~~~~~----i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 257 LLLAVELKLKK----IAELLCKRGASTDC 281 (285)
T ss_dssp HHHHHHTTCHH----HHHHHHHHSSCSCC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCCCc
Confidence 33445566654 34444556766654
No 301
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=36.08 E-value=19 Score=31.03 Aligned_cols=16 Identities=19% Similarity=-0.049 Sum_probs=0.0
Q ss_pred CCCC----cCCCCCcCCCCC
Q 009025 1 MASN----LCYSTCSLFSTP 16 (546)
Q Consensus 1 ~~~~----~c~~~~~~~~~~ 16 (546)
||++ +|++.|+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (224)
T 3bbo_K 1 MAQPLVAAPSSSSITSPIPR 20 (224)
T ss_dssp --------------------
T ss_pred CCccccchhhcccccccCCC
Confidence 6765 899999988865
No 302
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=35.97 E-value=2.3e+02 Score=25.01 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=25.3
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 119 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 170 (546)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 170 (546)
++...-...+.++.+.|. ..+...+..+.. .++...-...+.++++.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhc
Confidence 355555555556666664 334444444443 345555555556666655
No 303
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.68 E-value=40 Score=29.00 Aligned_cols=18 Identities=6% Similarity=-0.158 Sum_probs=11.8
Q ss_pred hhhhcCCHHHHHHHHHHH
Q 009025 95 YDTRAGNVEMAFGLYDRA 112 (546)
Q Consensus 95 ~~~~~g~~~~A~~l~~~~ 112 (546)
..++.|+++....+++.-
T Consensus 12 ~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 12 NLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHTCHHHHHHHHHHC
T ss_pred HHHHhCCHHHHHHHHHhc
Confidence 445777777777776653
No 304
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=35.06 E-value=2.9e+02 Score=29.90 Aligned_cols=157 Identities=10% Similarity=-0.016 Sum_probs=81.9
Q ss_pred HHHHHHHHcCC---hHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 126 TLIKLYGTAGN---FDGCLNVYEEMKAI----GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 126 ~li~~~~~~g~---~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
.++...|..|. .+.|.+.|+..... .+.||.. ..+...-.+.|..++-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 34555566664 34577777776543 2455543 22333334557666666777777664 2455556778
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHH----HHhCCCCCCCHHHHHHHHHHHH
Q 009025 199 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFED----MKSSENCQPDSWTFSSMITICS 273 (546)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~----m~~~~~~~~~~~~~~~li~~~~ 273 (546)
.+++...+.+...++++.............. .++.+...+. -.+.|.+.+.+ +.+. .......+..+|....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~--~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQD--YGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGGGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTS--SSSCCCCHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchhhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHH--hCCCchHHHHHHHHHH
Confidence 8888778877777777766543321122222 2333333332 23445555544 2221 1223345666777666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009025 274 CRGKVSEAEAMFNEMLE 290 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~ 290 (546)
..-.-++-.+-++...+
T Consensus 843 ~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKK 859 (909)
T ss_dssp TTCCSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 65544444444444443
No 305
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=33.93 E-value=2.6e+02 Score=25.08 Aligned_cols=52 Identities=8% Similarity=-0.118 Sum_probs=24.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009025 167 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 219 (546)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 219 (546)
.+.|+++++++....-++.. +-|...-..|+..+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555554444444432 22444444555555555555555554444443
No 306
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.94 E-value=3.2e+02 Score=25.77 Aligned_cols=61 Identities=18% Similarity=0.350 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCC
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSP 189 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p 189 (546)
..+|.-|...|+.++|...++++.. |+ ...+..+..++-+.. ..+.+..++..+...|+-+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 4677778888888888888888752 43 233343333333221 1244556666666655543
No 307
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=32.88 E-value=2.1e+02 Score=23.74 Aligned_cols=35 Identities=9% Similarity=-0.022 Sum_probs=23.8
Q ss_pred CCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHhhhC
Q 009025 292 GFEPNLFVLTS--LIQCYGKAQRTDDVVRALNRLPEL 326 (546)
Q Consensus 292 ~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~ 326 (546)
++.|...+|-. ....|...|..|+...+|..+...
T Consensus 201 n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 201 EHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp TSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence 45677666643 344566788888888888877754
No 308
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.73 E-value=2.1e+02 Score=23.67 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009025 173 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223 (546)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 223 (546)
+.+..+++.+.+.|+--|..--...+....+.|.+. ...+-.++..+|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 445666777777776655544455555555544332 24555666777764
No 309
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.64 E-value=1.3e+02 Score=28.08 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 009025 125 STLIKLYGTAGNFDGCLNVYEEMK 148 (546)
Q Consensus 125 ~~li~~~~~~g~~~~A~~~~~~m~ 148 (546)
..++.-|...|+.++|...++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 345666666677777766666654
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.58 E-value=2e+02 Score=22.98 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=28.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 182 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
+.+.|+.++ .--..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 444555432 22333444444444455566666666555444455554444555555443
No 311
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.98 E-value=2.5e+02 Score=23.90 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 205 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
.+.+.|+-.+.+|++.| .|.-..-..++.+.-..|
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 44444444444444444 333333333333333333
No 312
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.88 E-value=2.3e+02 Score=23.42 Aligned_cols=111 Identities=9% Similarity=-0.003 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009025 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 233 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 233 (546)
+|...-...+.++.+.++.+....+.+ +.. .++..+-...+.++.+.+..+. ...+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 455555555555555554333322322 222 2355555555555555554432 222222222 23555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009025 234 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 277 (546)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 277 (546)
.++.+.|+.+ +...+..+.. .++...-...+.++.+.++
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCC
Confidence 5555555533 2222222322 3444444444555555544
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.81 E-value=17 Score=31.62 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=50.8
Q ss_pred cchhhhcCCHHHHHHHHHHHHhCCCccCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHH
Q 009025 93 KSYDTRAGNVEMAFGLYDRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT---YNNLLDTMG 167 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~ 167 (546)
+...++.|+++....+++ .|..++.. .-.+.+...+..|+.+-+. .+.+.|..++... -.+.+...+
T Consensus 13 l~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred HHHHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHH
Confidence 334557888777666655 33322211 1112444556667765443 4444443222110 112334444
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009025 168 RAKRPWQVKTIYKEMTDNGLSPNWN--TYASLLRAYGRARYGEDTLSVYREMKEKGMQ 223 (546)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 223 (546)
..|+.+-+ +.+.+.|..++.. .....+...+..|+.+ +++.+.+.|..
T Consensus 85 ~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~ 134 (240)
T 3eu9_A 85 RQGHLSMV----VQLMKYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQD 134 (240)
T ss_dssp HHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCC
T ss_pred HcCCHHHH----HHHHHcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCC
Confidence 55665443 4444555444321 1112334444556654 33344444443
No 314
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=30.53 E-value=5.5e+02 Score=27.74 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=18.5
Q ss_pred HHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 131 YGTAGN--FDGCLNVYEEMKAIGVKPNMITYNNLLDTM 166 (546)
Q Consensus 131 ~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 166 (546)
+++.|. +..++++...+.. ..+...|..++..+
T Consensus 604 la~ag~~~~~~~l~l~~~l~~---E~~y~~w~~~~~~l 638 (909)
T 4fke_A 604 LATAHMVPVTLALDNTLFLNG---EKEYMPWQAALSSL 638 (909)
T ss_dssp HHHTTSSCHHHHHHTTGGGGG---CCSHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHcc---CccHHHHHHHHHHH
Confidence 445553 4556666555544 45666666665544
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.49 E-value=1.8e+02 Score=23.26 Aligned_cols=58 Identities=5% Similarity=-0.008 Sum_probs=28.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 346 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 346 (546)
+.+.|+++ ...-..+++.+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 18 l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44455542 22333444555555555566666666665554455555444455444444
No 316
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.03 E-value=2.5e+02 Score=23.84 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=14.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009025 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLL 198 (546)
Q Consensus 169 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 198 (546)
..|.+.|+-.+.+|++.|..|.-..-..++
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi 49 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLA 49 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345555555555555555444333333333
No 317
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.46 E-value=58 Score=27.88 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhc
Q 009025 128 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW---NTYASLLRAYGRA 204 (546)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~ 204 (546)
+...++.|+.+....+++.-...--..+..-++ .+...+..|+.+-+ +.+.+.|..++. .-++ .+...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWS-PLHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCC-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCC-HHHHHHHc
Confidence 445566788877777776532211112222222 33334455665443 444455544332 1122 23333445
Q ss_pred CChHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHH
Q 009025 205 RYGEDTLSVYREMKEKGMQLSV---TLYNTLLAMCADVGYTDEAFEIF 249 (546)
Q Consensus 205 g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~ 249 (546)
|+.+ +++.+.+.|..++. .-. +.+...+..|+.+-+..++
T Consensus 84 ~~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 84 GXDE----IVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHH
T ss_pred CHHH----HHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH
Confidence 5554 33444444443321 111 2233334556655444443
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.41 E-value=16 Score=32.53 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=13.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC
Q 009025 131 YGTAGNFDGCLNVYEEMKAIGVKPN 155 (546)
Q Consensus 131 ~~~~g~~~~A~~~~~~m~~~g~~p~ 155 (546)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3445666665555555555444333
No 319
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.85 E-value=2e+02 Score=24.79 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCccCHH--HH-----HHHHHHHHHcCChHHHHHHHHHHHHC
Q 009025 102 VEMAFGLYDRARNEKWRIDPN--AF-----STLIKLYGTAGNFDGCLNVYEEMKAI 150 (546)
Q Consensus 102 ~~~A~~l~~~~~~~g~~~~~~--~~-----~~li~~~~~~g~~~~A~~~~~~m~~~ 150 (546)
++.|+.+++.+...-..++.. .- -..+..|.+.|.+++|.++|++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 677888888877652111111 11 12345577778888888888777654
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.36 E-value=2e+02 Score=22.73 Aligned_cols=58 Identities=9% Similarity=-0.053 Sum_probs=30.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 346 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 346 (546)
+.+.|++.+.. -..+++.+...+..-.|.++++.+.+.+...+..|....|+.+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 44556554432 23344444444555566666666665555555555555555555444
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.11 E-value=2.1e+02 Score=22.36 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 207 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 207 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
.-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3334444444444443334444444444444444
No 322
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=26.86 E-value=3.1e+02 Score=23.65 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 009025 171 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 224 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~ 224 (546)
..+.+..+++.+.+.|+--|..--...+....+.+.+ ....+-.++..+|+..
T Consensus 91 ~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 91 PEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 3456778888888888875555555666666552222 2455667788888764
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.65 E-value=1.9e+02 Score=22.85 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=24.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 182 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 182 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
+.+.|+..+.. -..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34444443322 22233333333334445555555554444444444444444444444
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.55 E-value=1.2e+02 Score=28.48 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 009025 228 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK--VSEAEAMFNEMLEAGF 293 (546)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 293 (546)
....++.-|...|+.++|.+.++++.... ........++......++ -+.+..++..+.+.|+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~---~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPS---LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG---GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcc---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 35678888889999999999998875211 111112222222222222 3455666666666544
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.41 E-value=41 Score=31.65 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=8.0
Q ss_pred cchhhhcCCHHHHHHHH
Q 009025 93 KSYDTRAGNVEMAFGLY 109 (546)
Q Consensus 93 ~~~~~~~g~~~~A~~l~ 109 (546)
+.+.++.|+++.+..++
T Consensus 24 L~~Aa~~g~~~~v~~Ll 40 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLI 40 (364)
T ss_dssp HHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 34444555555444444
No 326
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.90 E-value=4.6e+02 Score=25.41 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=36.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHhhhCC
Q 009025 274 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT-----DDVVRALNRLPELG 327 (546)
Q Consensus 274 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~~ 327 (546)
+.++.+.|..++.+|.+.|..|....-..++.+.-.-|.- .-|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 4578888888888888888777666666666666665553 34455555555555
No 327
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.24 E-value=2.8e+02 Score=23.85 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCcCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009025 208 EDTLSVYREMKEKGMQLSVT-------LYNTLLAMCADVGYTDEAFEIFEDMKSS 255 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (546)
+.|+.+|+.+.+.-..++.. .--..+..|.+.|.+++|.++|++....
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 55666666665442111111 1123456778888888888888887764
No 328
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.35 E-value=3.4e+02 Score=23.27 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=16.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009025 169 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 201 (546)
Q Consensus 169 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 201 (546)
..|.+.|+-.+.+|++.|..|.-..-..++-+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345555555555555555444433333333333
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.26 E-value=1.4e+02 Score=25.36 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcccCccch-------hhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009025 382 KKEATELFNSISKDVKKA-------YCNCLIDLCVNLNLLENACKLLELGL 425 (546)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~ 425 (546)
++.|+.+++.+....+.. .--..+..|.+.|.+++|.++|++..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 577888888776543321 23345567999999999999999854
No 330
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.26 E-value=3.3e+02 Score=23.13 Aligned_cols=54 Identities=11% Similarity=0.010 Sum_probs=25.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 009025 238 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-----VSEAEAMFNEMLEAGF 293 (546)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~ 293 (546)
+-.+.+.|+-++-+|.+.| .|....-..++-+.-.-|. +..|...++....-|.
T Consensus 26 RGSDpDAAly~LaRml~~G--Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG--DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3455555555555655555 4444444444444444443 2233444444444444
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.08 E-value=1.9e+02 Score=22.97 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCADVG 240 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 240 (546)
|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 36 a~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 36 PDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4444444443333333333333333333333
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.06 E-value=2.2e+02 Score=22.71 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009025 208 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 241 (546)
Q Consensus 208 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 241 (546)
-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3344555554444433444444444444444443
No 333
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.05 E-value=2.8e+02 Score=24.03 Aligned_cols=54 Identities=6% Similarity=0.033 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009025 279 SEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 332 (546)
Q Consensus 279 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 332 (546)
+++..+|..|...|+.-. ..-|......+...|++.+|.++|+.-++.+-+|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 577889999998877655 456777788888899999999999988877777744
No 334
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.04 E-value=3.3e+02 Score=23.06 Aligned_cols=38 Identities=13% Similarity=-0.021 Sum_probs=21.8
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCH
Q 009025 310 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 347 (546)
Q Consensus 310 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 347 (546)
..+.|.|+-.+-+|++.|-.|....-..++-+.-.-|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 35566666666666666655555555555555554444
No 335
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=23.55 E-value=3.2e+02 Score=22.71 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcc
Q 009025 406 DLCVNLNLLENACKLLELGLTLE 428 (546)
Q Consensus 406 ~~~~~~g~~~~A~~~~~~m~~~g 428 (546)
.-|...|..++...+|....+.+
T Consensus 216 ~~yf~lg~~d~s~~lf~~lR~kD 238 (242)
T 3kae_A 216 RRYFNLGMNDKSKACFELVRRKD 238 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhcccchhHHHHHHHHHhcC
Confidence 34566788888888887776654
No 336
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.53 E-value=46 Score=27.81 Aligned_cols=15 Identities=13% Similarity=0.415 Sum_probs=7.0
Q ss_pred HHHHHHHHHcCCCCC
Q 009025 282 EAMFNEMLEAGFEPN 296 (546)
Q Consensus 282 ~~~~~~m~~~~~~p~ 296 (546)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 444444555554433
No 337
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.08 E-value=3.8e+02 Score=23.45 Aligned_cols=183 Identities=8% Similarity=0.013 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCcCHHHH
Q 009025 154 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG----EDTLSVYREMKEKGMQLSVTLY 229 (546)
Q Consensus 154 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~ 229 (546)
+|...-...+.++.+.+.. .+...+..+... ++...-...+.++.+.|.. .....++..+... .++..+-
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr 108 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVR 108 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHH
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHH
Confidence 4555555556666666643 344444444442 4556666666777766632 2333344322112 2356666
Q ss_pred HHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009025 230 NTLLAMCADVGY-----TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 304 (546)
Q Consensus 230 ~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 304 (546)
...+.++...+. ...+...+..+.. .++..+-...+.++...|+.+ +...+..+.. .++...-...+
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~----d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 180 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAF----DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTT----CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhh----CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 666666666552 3455555555543 566666677777777777643 4444444443 25665555556
Q ss_pred HHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 009025 305 QCYGKAQ-RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 353 (546)
Q Consensus 305 ~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~a~~~ 353 (546)
.++...| ....+...+..+.+ .++..+-...+.++.+.|..++...
T Consensus 181 ~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~ 227 (280)
T 1oyz_A 181 FAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSV 227 (280)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHH
Confidence 6665554 23445555555543 3566666666666666665434433
No 338
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.50 E-value=2.2e+02 Score=22.21 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=7.4
Q ss_pred ChhHHHHHHHHHHHCC
Q 009025 171 RPWQVKTIYKEMTDNG 186 (546)
Q Consensus 171 ~~~~a~~~~~~m~~~g 186 (546)
..-.|.++++.+.+.+
T Consensus 33 ~~~sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAG 48 (136)
T ss_dssp CSBCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhhC
Confidence 3444445555554443
No 339
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.16 E-value=4.6e+02 Score=25.70 Aligned_cols=135 Identities=11% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 009025 108 LYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL 187 (546)
Q Consensus 108 l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 187 (546)
.++-..+.|++--...|..-...+...|++++|.++-..... |+-.+..|.+-+-.+=...|+..-.+.+|..+.+.|
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g- 425 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG- 425 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009025 188 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 252 (546)
Q Consensus 188 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (546)
..+..----+++.-...|+.+-.++.+.+ |..+++.=+.-+.+..+..-|+.+|.+.
T Consensus 426 ~Ln~~ESlEl~r~vL~q~r~~llekWl~e--------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 426 QLNKYESLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHH--------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred ccchHHhhHHhHHHHhccHHHHHHHHHhc--------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 340
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.40 E-value=5.4e+02 Score=24.55 Aligned_cols=156 Identities=10% Similarity=0.041 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHhCCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009025 228 LYNTLLAMCADVGY---TDEAFEIFEDMKSSEN---CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 301 (546)
Q Consensus 228 ~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 301 (546)
.-..++...|..|+ .++|.+.|+.....+. ++||.... +-..+ .+..++-..+++..... .+..--.
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~---Vy~~~-~~~~~~~~~l~~~y~~s---~~~~ek~ 271 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA---VFAVG-AQSTEGWDFLYSKYQFS---LSSTEKS 271 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH---HHHHH-TTSHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee---EEeee-eCCHHHHHHHHHHHhcC---CCHHHHH
Confidence 33455566666665 4566777776654321 24443321 11111 11233334445555542 3445556
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHHHHHhcC--CHHHHHHHHHH----HHH-cCCC---hhHHHHH
Q 009025 302 SLIQCYGKAQRTDDVVRALNRLPELGI-TPDDRFCGCLLNVMTQT--PKEELGKLVEC----VEK-SNSK---LGYVVKL 370 (546)
Q Consensus 302 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~--g~~~a~~~~~~----~~~-~~~~---~~~~~~~ 370 (546)
.++.+++...+.+...++++......+ ++.... .++.+.... |.+.+.+.+.. +.+ .+.. ...++..
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~--~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~ 349 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFP--QILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMG 349 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHH--HHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHH--HHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHH
Confidence 777777777777777777776665443 433322 123333332 33556655432 222 2211 2222333
Q ss_pred HHHhhhhhcchHHHHHHHHHhcc
Q 009025 371 LLEEQDIEGDFKKEATELFNSIS 393 (546)
Q Consensus 371 L~~~~~~~g~~~~~A~~~~~~~~ 393 (546)
+...+.... .+++..++|+...
T Consensus 350 ~~~~~~t~~-~l~e~~~Ff~~~~ 371 (419)
T 3rjo_A 350 TTNQFSTRT-RLEEVKGFFSSLK 371 (419)
T ss_dssp TTTTCCSHH-HHHHHHHHHHTTT
T ss_pred HhhcCCCHH-HHHHHHHHHHhCc
Confidence 333333323 4577777777654
No 341
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.38 E-value=2.1e+02 Score=19.74 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009025 210 TLSVYREMKEKGMQLSVTLYNTLLAMCAD 238 (546)
Q Consensus 210 A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 238 (546)
+.++++.+.+.+...+..|..-.+..+.+
T Consensus 36 ~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 36 AEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 34444444433333333333333333333
No 342
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=21.12 E-value=5.4e+02 Score=24.48 Aligned_cols=238 Identities=10% Similarity=0.055 Sum_probs=136.9
Q ss_pred hhccchhhhcCCHHHHHHHHHHHHhC-CCc---cCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHH-----
Q 009025 90 LKEKSYDTRAGNVEMAFGLYDRARNE-KWR---IDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMITY----- 159 (546)
Q Consensus 90 l~~~~~~~~~g~~~~A~~l~~~~~~~-g~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~----- 159 (546)
+.....|.+.|+.++...++...+.- +.- -..-....|+..+.... ..+.-.++..+..+..-. +..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 35567788999999999998877542 111 13335667888887653 344444444444332100 11122
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHHC--CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcCHHHHHH
Q 009025 160 -NNLLDTMGRAKRPWQVKTIYKEMTDN--GLSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLSVTLYNT 231 (546)
Q Consensus 160 -~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ 231 (546)
.-++..|...|++.+|.+++.++.+. .... -..+|-.-+.+|...+++.++...+...... .+.++......
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 25788899999999999999888763 1111 1356777788899999999999999877532 22233332221
Q ss_pred ----HHHHHH-hcCCHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHH
Q 009025 232 ----LLAMCA-DVGYTDEAFEIFEDMKSSENCQPD------SWTFSSMITICSCRGKVSEAEAMFN-EMLEAGFEPNLFV 299 (546)
Q Consensus 232 ----li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~ 299 (546)
-...+. ..+++.+|...|-+..+.-. ..+ ...|..|..... ++..+...++. +....-..|....
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~-~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFD-SVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhccccccccCCccHHH
Confidence 123345 78999999988877643211 112 223333333222 22222222222 2111112356666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009025 300 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 333 (546)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 333 (546)
+..++.+| ..+++.+...++..... .+..|..
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 66677665 45677777777766543 2455654
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.92 E-value=1.7e+02 Score=23.74 Aligned_cols=59 Identities=7% Similarity=0.015 Sum_probs=35.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCCHHHHHHHHHHHhcCCH
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPDDRFCGCLLNVMTQTPK 347 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~ 347 (546)
+.+.|++.+. .-..+++.+...+..-.|.++++.+.+. +...+..|...-|+.+...|-
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3445666543 3344555556666666677777777655 555566666666666666665
No 344
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.73 E-value=1.5e+02 Score=20.04 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009025 196 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 237 (546)
Q Consensus 196 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 237 (546)
-+++.+++-.-.++++..++++.+.|.. +..+|---++.++
T Consensus 7 Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~La 47 (65)
T 2f6m_A 7 QLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3444444444444455555554444422 3444444343333
No 345
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.70 E-value=1.9e+02 Score=23.05 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=29.2
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009025 288 MLEAGFEPNLFVLTSLIQCYGKAQ-RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 346 (546)
Q Consensus 288 m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 346 (546)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|....|+.+...|
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44555554432 223344444444 44556666666665555555555554555444444
No 346
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.66 E-value=2.6e+02 Score=20.60 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=15.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009025 175 VKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 205 (546)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 205 (546)
+.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444455555555555555554444
No 347
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.26 E-value=57 Score=29.44 Aligned_cols=175 Identities=9% Similarity=-0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009025 106 FGLYDRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 185 (546)
Q Consensus 106 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 185 (546)
.++++.+.+.|..++...-.+.+...+..|+.+-+..+++. ...+......-.+.+...+..|+.+-+..+++.
T Consensus 44 ~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---- 117 (285)
T 3kea_A 44 VRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK---- 117 (285)
T ss_dssp HHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc----
Q ss_pred CCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009025 186 GLSPNWNTY---ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 261 (546)
Q Consensus 186 g~~p~~~~~---~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 261 (546)
|..++.... .+.+...+..|+.+ +++.+.+.|..+... .-.+.+...+..|+.+-+.-+++.-.... ..|
T Consensus 118 ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~ 191 (285)
T 3kea_A 118 NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN--TNN 191 (285)
T ss_dssp CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTC
T ss_pred CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCC--ccc
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 009025 262 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 296 (546)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 296 (546)
..-++..+...+..|+ .++.+.+.+.|..++
T Consensus 192 ~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 192 SLLFIPDIKLAIDNKD----IEMLQALFKYDINIY 222 (285)
T ss_dssp CCBCCTTHHHHHHHTC----HHHHHHHTTSCBCST
T ss_pred CCCCChHHHHHHHcCC----HHHHHHHHHcCCCCC
No 348
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.16 E-value=1.2e+02 Score=20.03 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=15.0
Q ss_pred hcCChhHHHHHHHHhhhCCCCCC
Q 009025 309 KAQRTDDVVRALNRLPELGITPD 331 (546)
Q Consensus 309 ~~g~~~~A~~~~~~m~~~~~~p~ 331 (546)
..|+.+.|+..+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 45677777777777765555554
Done!