Query 009026
Match_columns 546
No_of_seqs 136 out of 1450
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 19:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02346 chap_CCT_theta T-com 100.0 6E-107 1E-111 879.6 61.4 526 10-537 2-529 (531)
2 KOG0361 Chaperonin complex com 100.0 3E-108 6E-113 796.4 38.7 519 9-533 4-528 (543)
3 TIGR02339 thermosome_arch ther 100.0 5E-106 1E-110 873.2 59.4 508 13-526 4-518 (519)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 9E-106 2E-110 868.5 60.5 512 13-530 4-528 (531)
5 TIGR02344 chap_CCT_gamma T-com 100.0 1E-105 2E-110 872.0 58.3 511 13-529 4-523 (525)
6 cd03336 TCP1_beta TCP-1 (CTT o 100.0 5E-105 1E-109 863.2 60.7 507 15-529 3-515 (517)
7 PTZ00212 T-complex protein 1 s 100.0 6E-105 1E-109 865.3 60.1 513 11-530 8-528 (533)
8 cd03335 TCP1_alpha TCP-1 (CTT 100.0 6E-105 1E-109 865.5 59.2 503 21-529 4-527 (527)
9 TIGR02343 chap_CCT_epsi T-comp 100.0 6E-105 1E-109 863.8 59.2 511 13-527 13-531 (532)
10 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1E-104 2E-109 863.3 60.6 510 13-529 4-521 (522)
11 cd03343 cpn60 cpn60 chaperonin 100.0 8E-105 2E-109 864.5 59.4 509 13-527 3-516 (517)
12 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1E-104 2E-109 863.1 58.9 510 13-526 9-526 (526)
13 TIGR02342 chap_CCT_delta T-com 100.0 1E-104 3E-109 859.7 59.4 500 25-528 8-517 (517)
14 TIGR02341 chap_CCT_beta T-comp 100.0 2E-103 5E-108 849.5 60.3 509 14-530 3-517 (519)
15 TIGR02345 chap_CCT_eta T-compl 100.0 3E-103 7E-108 850.5 59.0 509 13-528 6-520 (522)
16 cd03338 TCP1_delta TCP-1 (CTT 100.0 3E-103 7E-108 851.2 58.8 503 20-527 3-515 (515)
17 TIGR02340 chap_CCT_alpha T-com 100.0 1E-102 2E-107 848.9 60.5 505 20-530 7-532 (536)
18 KOG0358 Chaperonin complex com 100.0 1E-102 2E-107 756.4 38.2 500 25-528 25-534 (534)
19 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 7E-101 1E-105 824.3 55.6 477 16-528 3-483 (484)
20 KOG0362 Chaperonin complex com 100.0 4E-101 9E-106 770.2 48.3 536 1-546 1-537 (537)
21 cd03341 TCP1_theta TCP-1 (CTT 100.0 2E-99 4E-104 811.2 54.6 466 22-527 4-471 (472)
22 KOG0363 Chaperonin complex com 100.0 3E-100 6E-105 736.2 38.3 516 10-532 3-523 (527)
23 cd03337 TCP1_gamma TCP-1 (CTT 100.0 6.6E-99 1E-103 808.7 51.9 467 13-526 4-479 (480)
24 cd00309 chaperonin_type_I_II c 100.0 4.3E-95 9E-100 779.5 54.5 456 24-526 6-464 (464)
25 COG0459 GroL Chaperonin GroEL 100.0 3.9E-94 8.5E-99 766.7 49.6 501 20-532 6-518 (524)
26 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1E-92 2.2E-97 768.2 52.5 480 38-529 1-485 (485)
27 PRK12849 groEL chaperonin GroE 100.0 9.3E-90 2E-94 742.8 52.9 460 25-538 9-532 (542)
28 PRK12851 groEL chaperonin GroE 100.0 2.1E-89 4.5E-94 740.8 53.4 468 25-544 10-540 (541)
29 PRK00013 groEL chaperonin GroE 100.0 2.3E-89 5E-94 739.8 52.4 467 25-543 9-539 (542)
30 PRK12850 groEL chaperonin GroE 100.0 8.8E-89 1.9E-93 736.4 53.8 468 25-544 10-540 (544)
31 KOG0360 Chaperonin complex com 100.0 3.4E-91 7.3E-96 694.0 29.8 506 22-533 16-541 (545)
32 KOG0364 Chaperonin complex com 100.0 1.6E-90 3.5E-95 682.9 28.0 515 11-531 5-524 (527)
33 cd03344 GroEL GroEL_like type 100.0 9E-88 2E-92 725.6 51.0 451 22-526 5-519 (520)
34 PTZ00114 Heat shock protein 60 100.0 2.1E-87 4.7E-92 728.0 54.2 456 25-531 21-543 (555)
35 PRK12852 groEL chaperonin GroE 100.0 2.4E-87 5.1E-92 727.0 53.1 457 25-533 10-530 (545)
36 TIGR02348 GroEL chaperonin Gro 100.0 5.1E-87 1.1E-91 721.2 51.3 452 25-529 8-523 (524)
37 CHL00093 groEL chaperonin GroE 100.0 1.3E-85 2.8E-90 711.1 48.0 456 25-530 9-527 (529)
38 PRK14104 chaperonin GroEL; Pro 100.0 5.7E-85 1.2E-89 706.1 52.5 460 25-536 10-533 (546)
39 PLN03167 Chaperonin-60 beta su 100.0 3.6E-85 7.8E-90 711.1 47.4 459 26-533 66-586 (600)
40 KOG0359 Chaperonin complex com 100.0 7E-81 1.5E-85 613.8 28.9 495 25-530 16-517 (520)
41 KOG0357 Chaperonin complex com 100.0 8.7E-70 1.9E-74 520.6 23.3 373 19-529 22-397 (400)
42 KOG0356 Mitochondrial chaperon 100.0 9.5E-48 2.1E-52 392.0 32.2 457 25-532 23-541 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 5.3E-40 1.1E-44 324.7 25.3 229 175-411 18-257 (261)
44 cd03333 chaperonin_like chaper 100.0 3.8E-35 8.3E-40 282.5 22.8 206 159-407 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.8 1.4E-20 3E-25 211.1 15.2 233 176-416 333-575 (1598)
46 COG1433 Uncharacterized conser 68.5 19 0.00042 31.2 6.6 53 280-333 56-108 (121)
47 cd00851 MTH1175 This uncharact 62.1 18 0.0004 29.7 5.3 39 280-319 54-92 (103)
48 PRK13600 putative ribosomal pr 60.1 38 0.00082 27.4 6.4 52 278-329 18-73 (84)
49 cd00562 NifX_NifB This CD repr 55.2 37 0.00081 27.7 6.0 38 281-319 53-90 (102)
50 PF02579 Nitro_FeMo-Co: Dinitr 52.3 47 0.001 26.7 6.0 38 281-319 45-82 (94)
51 PRK13602 putative ribosomal pr 42.7 97 0.0021 24.8 6.2 51 280-333 18-72 (82)
52 PRK07714 hypothetical protein; 39.7 1.2E+02 0.0025 25.2 6.6 50 280-332 25-78 (100)
53 PRK06683 hypothetical protein; 39.0 1.2E+02 0.0025 24.3 6.1 51 280-333 18-72 (82)
54 PF12846 AAA_10: AAA-like doma 38.3 77 0.0017 31.3 6.4 58 276-333 240-302 (304)
55 PF01248 Ribosomal_L7Ae: Ribos 38.0 82 0.0018 25.6 5.4 50 278-327 20-74 (95)
56 PRK13601 putative L7Ae-like ri 37.5 1.3E+02 0.0028 24.2 6.1 51 280-333 15-69 (82)
57 cd01143 YvrC Periplasmic bindi 36.7 1.1E+02 0.0023 28.2 6.7 52 282-333 53-111 (195)
58 TIGR03659 IsdE heme ABC transp 36.3 92 0.002 31.1 6.5 52 282-333 84-141 (289)
59 PRK07283 hypothetical protein; 35.8 1.4E+02 0.0031 24.6 6.5 49 280-331 25-77 (98)
60 PRK01018 50S ribosomal protein 35.0 1.5E+02 0.0032 24.6 6.4 50 280-332 23-77 (99)
61 COG4359 Uncharacterized conser 34.7 1.2E+02 0.0026 28.4 6.2 45 276-320 76-124 (220)
62 cd01144 BtuF Cobalamin binding 31.7 1.3E+02 0.0028 28.9 6.6 52 282-333 50-108 (245)
63 TIGR03677 rpl7ae 50S ribosomal 30.7 1.7E+02 0.0036 25.2 6.2 50 279-328 32-86 (117)
64 cd00852 NifB NifB belongs to a 30.6 1.7E+02 0.0036 24.3 6.2 31 288-319 64-94 (106)
65 COG1358 RPL8A Ribosomal protei 30.3 1.8E+02 0.0039 25.0 6.3 51 278-328 32-87 (116)
66 PRK04175 rpl7ae 50S ribosomal 30.0 1.8E+02 0.0039 25.2 6.4 50 278-327 35-89 (122)
67 PRK09534 btuF corrinoid ABC tr 29.9 1.3E+02 0.0027 31.4 6.4 53 281-333 111-170 (359)
68 TIGR02663 nifX nitrogen fixati 28.1 2E+02 0.0043 24.6 6.4 52 280-334 56-111 (119)
69 PTZ00106 60S ribosomal protein 27.1 2E+02 0.0044 24.3 6.0 50 280-332 32-86 (108)
70 PRK05583 ribosomal protein L7A 26.8 2.4E+02 0.0053 23.6 6.4 51 280-333 24-78 (104)
71 PF02603 Hpr_kinase_N: HPr Ser 26.0 64 0.0014 28.1 2.9 54 266-319 58-113 (127)
72 cd01138 FeuA Periplasmic bindi 25.9 1.7E+02 0.0036 28.2 6.2 52 281-333 58-113 (248)
73 COG1504 Uncharacterized conser 25.8 3.3E+02 0.0072 23.2 6.7 49 285-333 57-111 (121)
74 TIGR03151 enACPred_II putative 25.5 2.7E+02 0.0058 28.3 7.7 56 280-335 78-133 (307)
75 COG3962 Acetolactate synthase 24.8 69 0.0015 34.3 3.3 40 391-431 216-255 (617)
76 cd01141 TroA_d Periplasmic bin 24.5 1.6E+02 0.0036 26.8 5.6 50 282-331 62-119 (186)
77 cd00853 NifX NifX belongs to a 24.1 2.1E+02 0.0046 23.5 5.6 31 288-319 60-90 (102)
78 TIGR00129 fdhD_narQ formate de 24.1 1.5E+02 0.0032 29.0 5.3 41 280-320 183-223 (237)
79 cd04743 NPD_PKS 2-Nitropropane 23.8 2.7E+02 0.0059 28.5 7.3 55 280-335 73-127 (320)
80 PF07905 PucR: Purine cataboli 23.0 2.8E+02 0.006 23.8 6.3 47 277-323 60-111 (123)
81 PRK03379 vitamin B12-transport 22.9 2.2E+02 0.0047 27.9 6.4 52 282-333 65-123 (260)
82 PRK00724 formate dehydrogenase 22.6 1.6E+02 0.0035 29.2 5.3 41 280-320 212-252 (263)
83 PF07278 DUF1441: Protein of u 22.4 1.4E+02 0.0031 27.0 4.4 62 386-463 65-126 (152)
84 cd01149 HutB Hemin binding pro 21.7 2.6E+02 0.0056 26.7 6.6 52 282-333 51-110 (235)
85 PF08708 PriCT_1: Primase C te 21.0 3.8E+02 0.0082 20.3 7.0 53 109-170 15-67 (71)
86 COG1861 SpsF Spore coat polysa 20.7 2.6E+02 0.0056 27.1 5.9 53 280-332 33-89 (241)
No 1
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.7e-107 Score=879.64 Aligned_cols=526 Identities=63% Similarity=0.988 Sum_probs=496.2
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHH
Q 009026 10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG 89 (546)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~ 89 (546)
+..+++++....++.++++..|+.||..++++++|||||+||+|||++++|+++|||||+||+++|+++||+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a 81 (531)
T TIGR02346 2 INSLLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMAS 81 (531)
T ss_pred ccccccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHH
Confidence 45566776566667556999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhh
Q 009026 90 KAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAV 169 (546)
Q Consensus 90 ~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l 169 (546)
++|++++||||||+|||+++||+++.+|+++|+||..|++||+.|++.+++.|++++...+. +..+.+.|.++++|++
T Consensus 82 ~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~i~~tsl 159 (531)
T TIGR02346 82 EMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVE--DVRNKKELIKALKASI 159 (531)
T ss_pred HHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998863333 4567889999999999
Q ss_pred cccccCchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCCCCcccccCceEEEEEeecc
Q 009026 170 ASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVD 249 (546)
Q Consensus 170 ~sk~~~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~~~~~~i~n~kI~ll~~~l~ 249 (546)
+||+.+++++|++++++|+.++++++...++++.|+|+++.||++++|++++|++|++++.++|+.++||||+++++|++
T Consensus 160 ~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~ 239 (531)
T TIGR02346 160 SSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLD 239 (531)
T ss_pred ccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCCCCceeccCCCEEEEecCcC
Confidence 99976669999999999999998655335889999999999999999999999999999888899999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHH
Q 009026 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (546)
Q Consensus 250 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~ 329 (546)
+.+++.++++.+++++++.++.+.|+++++++++++++.|++|||++++|+|.+++||.++||+++++++..+|+|||.+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~ 319 (531)
T TIGR02346 240 TATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKT 319 (531)
T ss_pred CCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCe
Q 009026 330 TGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409 (546)
Q Consensus 330 tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~ 409 (546)
|||++++++++++++++|+|+.|++.++|+++|.+|+++...++.+||+|||+|+.+++|+||+++||++++++++++|+
T Consensus 320 tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~ 399 (531)
T TIGR02346 320 VGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNR 399 (531)
T ss_pred HCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999998863478999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCc-
Q 009026 410 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV- 488 (546)
Q Consensus 410 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~- 488 (546)
+||||||+|++++.+|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|+
T Consensus 400 vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~ 479 (531)
T TIGR02346 400 FLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESD 479 (531)
T ss_pred EEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCc
Confidence 9999999999999999999888889999999999999999999999999999999999999999877778999999999
Q ss_pred -ccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCCC
Q 009026 489 -CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQ 537 (546)
Q Consensus 489 -i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~~~~~~~ 537 (546)
+.||++.|||||+.||+++|+.|+|+|++|||||++|..+|...++.|+
T Consensus 480 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~~ 529 (531)
T TIGR02346 480 GVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQ 529 (531)
T ss_pred cccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCCC
Confidence 5999999999999999999999999999999999999998877776665
No 2
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-108 Score=796.42 Aligned_cols=519 Identities=26% Similarity=0.448 Sum_probs=491.8
Q ss_pred ccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHH
Q 009026 9 GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLA 88 (546)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~ 88 (546)
....++|++++.++|. ..+-+||.||..+++.++|||||+|+||+|++..|+++|||||+|||+-|++-||+||.+++.
T Consensus 4 ~~ii~lkegtd~sqGk-~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdi 82 (543)
T KOG0361|consen 4 PPIILLKEGTDPSQGK-GQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDI 82 (543)
T ss_pred CCEEEeecccCcccCc-hhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHH
Confidence 4566779999998884 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhh
Q 009026 89 GKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAA 168 (546)
Q Consensus 89 ~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~ 168 (546)
+++||.++||||||||+|++++|+++..+++.|+||..|+++|+.|...|++.++++++.....-...-++-|.+.+.|+
T Consensus 83 a~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~ 162 (543)
T KOG0361|consen 83 ARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATA 162 (543)
T ss_pred HhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987621000112266788999999
Q ss_pred hcccc-cCchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC-----CCcccccCceEE
Q 009026 169 VASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEKAKVA 242 (546)
Q Consensus 169 l~sk~-~~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~-----~~~~~i~n~kI~ 242 (546)
++||+ ..+.++|+++++||+..+.. ..+++.|-|.|++||+++||.+++|+.|++.|. .+|+++.||||+
T Consensus 163 lsSKlI~~ek~fF~~MvVDAV~~ld~----~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl 238 (543)
T KOG0361|consen 163 LSSKLIRQEKEFFAKMVVDAVLTLDN----DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 238 (543)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhcc----ccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEE
Confidence 99995 56789999999999998852 267789999999999999999999999999873 579999999999
Q ss_pred EEEeecccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHH
Q 009026 243 VFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFE 322 (546)
Q Consensus 243 ll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~ 322 (546)
++|..||.+..+.++++.+.++++++.+.+.||+.+.++++++.+.|+|||++.-.|.|++.+||++++|.|-.|++.+|
T Consensus 239 ~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eD 318 (543)
T KOG0361|consen 239 LLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEED 318 (543)
T ss_pred EEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 009026 323 LRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYK 402 (546)
Q Consensus 323 l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~ 402 (546)
|.|+..++|++++++..++.++.+|.|..|+++++|++||.+|++|+ ..++||++|||+.++.++|.+|++|||++++|
T Consensus 319 l~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp-~aktcTliLRGgaeqfieE~eRSlHDAImIVr 397 (543)
T KOG0361|consen 319 LNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCP-KAKTCTLILRGGAEQFIEETERSLHDAIMIVR 397 (543)
T ss_pred HHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCC-ccceeEEEEeccHHHHHHHHhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999998 48899999999999999999999999999999
Q ss_pred HHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeE
Q 009026 403 AMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGI 482 (546)
Q Consensus 403 ~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gi 482 (546)
.++++..||+|||++||+++++||+|+..+.+++|+.+.+||+|||.|||+||+|+|+|..+++.+||..|.+|..|+|+
T Consensus 398 ralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gv 477 (543)
T KOG0361|consen 398 RALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGV 477 (543)
T ss_pred HHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q 009026 483 DLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGP 533 (546)
Q Consensus 483 d~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~~~ 533 (546)
|..++.+.|+++.+||||..||++++..|+|+|++||.+|+.|...++.++
T Consensus 478 di~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~ 528 (543)
T KOG0361|consen 478 DINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSA 528 (543)
T ss_pred eecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCC
Confidence 999999999999999999999999999999999999999999998876554
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=4.9e-106 Score=873.23 Aligned_cols=508 Identities=31% Similarity=0.573 Sum_probs=484.5
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHh
Q 009026 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (546)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (546)
+++++.+..++ .+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (519)
T TIGR02339 4 ILKEGTQRTKG-RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82 (519)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45777777777 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhccc
Q 009026 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (546)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (546)
++++||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++.+ ++..+++.|.++++|+++||
T Consensus 83 d~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~----v~~~~~~~L~~ia~tsl~sk 158 (519)
T TIGR02339 83 DAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATK----ISPEDRDLLKKVAETSLTGK 158 (519)
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccc----cCcccHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999875 25567889999999999999
Q ss_pred cc--CchhhHHHHHHHHHHHhcC---CCCCcccccchhhhhcCCCCcccceeEeeEEEeccC--CCCcccccCceEEEEE
Q 009026 173 QF--GQEEILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFA 245 (546)
Q Consensus 173 ~~--~~~~~ls~lv~~a~~~v~~---~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~--~~~~~~i~n~kI~ll~ 245 (546)
+. .+.++|++++++|+.++++ ++...||+++|+|++++||+++||++++|++|++++ ..|+++++||||++++
T Consensus 159 ~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~ 238 (519)
T TIGR02339 159 ASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLD 238 (519)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEe
Confidence 65 4689999999999999975 333358889999999999999999999999999987 4689999999999999
Q ss_pred eecccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHH
Q 009026 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (546)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ 325 (546)
++|++++++.++++.+++++++.++.++|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~r 318 (519)
T TIGR02339 239 APLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEK 318 (519)
T ss_pred ccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHh
Q 009026 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (546)
Q Consensus 326 ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~ 405 (546)
||++|||++++++++++++.+|+|++|++.++|+++|++|++|. .+..+||+||||++.+++|++|+++||++++++++
T Consensus 319 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~ 397 (519)
T TIGR02339 319 LARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCK-NPKAVTILLRGGTEHVVDELERSIQDALHVVASAL 397 (519)
T ss_pred HHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999986 47899999999999999999999999999999999
Q ss_pred hCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEecc
Q 009026 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 485 (546)
Q Consensus 406 ~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~ 485 (546)
++|++|||||++|++++.+|++++.+.++++++++++||+||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.
T Consensus 398 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~ 477 (519)
T TIGR02339 398 EDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVF 477 (519)
T ss_pred cCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcC
Confidence 99999999999999999999999888899999999999999999999999999999999999999999876778999999
Q ss_pred CCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhh
Q 009026 486 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIM 526 (546)
Q Consensus 486 ~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~ 526 (546)
+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 478 ~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 478 TGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred CCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 99999999999999999999999999999999999999985
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.9e-106 Score=868.50 Aligned_cols=512 Identities=26% Similarity=0.425 Sum_probs=484.7
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHh
Q 009026 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (546)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (546)
+++++....++ ++++..|+.||.+|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~q 82 (531)
T TIGR02347 4 LLNPKAESLRR-DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQ 82 (531)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Confidence 44666666666 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhccc
Q 009026 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (546)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (546)
++++||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++++.. +..+.+.|.++++|+++||
T Consensus 83 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~---~~~~~~~l~~ia~tsl~sK 159 (531)
T TIGR02347 83 DDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTE---DEVDRELLLNVARTSLRTK 159 (531)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999986521 3567899999999999999
Q ss_pred cc-CchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccC--CCCcccccCceEEEEEeecc
Q 009026 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGGVD 249 (546)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~--~~~~~~i~n~kI~ll~~~l~ 249 (546)
+. .++++|++++++|+..+++++. .+++++|++++..||+.+||++++|++|++++ ..|+++++||||++++++|+
T Consensus 160 ~~~~~~~~ls~iv~~Av~~v~~~~~-~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le 238 (531)
T TIGR02347 160 LPIDLADQLTEIVVDAVLAIKKDGE-QIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLE 238 (531)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcCC-CCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCC
Confidence 64 5799999999999999987542 48888899999999999999999999999887 36899999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEeCCcccHHHHHHHHHCCeEEEEecC
Q 009026 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESG-------AE---VIVSGAAVGEMALHFCERYKLMVLKISS 319 (546)
Q Consensus 250 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~-------v~---vVi~~~~i~~~~~~~l~~~~I~vv~~v~ 319 (546)
+.+++.++++.+++++++..+.+.|++++++++++|++.+ ++ ||+|+++|++.+++||.++||+++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~ 318 (531)
T TIGR02347 239 YEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAK 318 (531)
T ss_pred CCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCC
Confidence 9999999999999999999999999999999999999976 25 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHH
Q 009026 320 KFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVN 399 (546)
Q Consensus 320 ~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~ 399 (546)
+++|+|||++|||++++++++++++++|+|+.|++..+|+++|++|++|. .++.+||+|||+|+.+++|++|+++||++
T Consensus 319 ~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~-~~~~~TI~lrG~t~~~l~E~er~l~DAl~ 397 (531)
T TIGR02347 319 RRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVK-NPKSCTILIKGPNDHTIKQIKDAVRDGLR 397 (531)
T ss_pred HHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCC-CCCeEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 48899999999999999999999999999
Q ss_pred HHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCc
Q 009026 400 TYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK 479 (546)
Q Consensus 400 ~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~ 479 (546)
++++++++|++||||||+|++++.+|++++...++++++++++||+||+.||++|++|||+|+.+++.+|++.|.+++.+
T Consensus 398 v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~ 477 (531)
T TIGR02347 398 AVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEV 477 (531)
T ss_pred HHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999877778
Q ss_pred eeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q 009026 480 VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 530 (546)
Q Consensus 480 ~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~ 530 (546)
+|+|+.+|.+.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|.
T Consensus 478 ~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~ 528 (531)
T TIGR02347 478 VGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS 528 (531)
T ss_pred eeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999988775
No 5
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.6e-106 Score=872.05 Aligned_cols=511 Identities=27% Similarity=0.487 Sum_probs=483.4
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHh
Q 009026 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (546)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (546)
+++++.+..++ ++++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q 82 (525)
T TIGR02344 4 VLNQNTKRESG-RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (525)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhh
Confidence 35666666666 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhccc
Q 009026 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (546)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (546)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++ ++..+.+.|.++++|+++||
T Consensus 83 ~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~----~~~~~~~~l~~i~~t~l~sk 158 (525)
T TIGR02344 83 DEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIP----VDVNDDAAMLKLIQSCIGTK 158 (525)
T ss_pred hhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccc----cCCCCHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999998875 35667888999999999999
Q ss_pred c-cCchhhHHHHHHHHHHHhcCCC---CCccccc-chhhhhcCCCCcccceeEeeEEEeccC--CCCcccccCceEEEEE
Q 009026 173 Q-FGQEEILCPLIADACIQVCPKN---PANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFA 245 (546)
Q Consensus 173 ~-~~~~~~ls~lv~~a~~~v~~~~---~~~~~~~-~I~i~k~~Gg~~~dS~li~Giv~~~~~--~~~~~~i~n~kI~ll~ 245 (546)
+ ..+.++|++++++|+..+.+++ ...+|++ +|+|++++||+++||++++|++|++++ ..|+++++||||++++
T Consensus 159 ~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~ 238 (525)
T TIGR02344 159 FVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLD 238 (525)
T ss_pred cchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEe
Confidence 6 4578999999999999997643 2245655 389999999999999999999999887 3689999999999999
Q ss_pred eecccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHH
Q 009026 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (546)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ 325 (546)
++|++.+++.++++.++++++++.+.++|++++++++++|.+.|++||+|+++|++.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~Ler 318 (525)
T TIGR02344 239 CPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNR 318 (525)
T ss_pred cccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccccCCCCCCCccc-ceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Q 009026 326 FCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (546)
Q Consensus 326 ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~ 404 (546)
||++|||++++++++++++++|+ |+.|++.++|+++|++|++|+ .+++|||+|||+++.+++|+||+++||+++++++
T Consensus 319 Ia~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~-~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~ 397 (525)
T TIGR02344 319 IARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECK-DPKACTILLRGASKDVLNEIERNLQDAMAVARNV 397 (525)
T ss_pred HHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCC-CCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999987 4789999999999999999999999999999999
Q ss_pred hhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcC-CCceeEe
Q 009026 405 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGID 483 (546)
Q Consensus 405 ~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~-~~~~Gid 483 (546)
++++++||||||+|++||.+|+++++..++.+++++++||+||+.||++|++|||+|+.+++.+|+..|.++ +.++|+|
T Consensus 398 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 477 (525)
T TIGR02344 398 LLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGID 477 (525)
T ss_pred HhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEE
Confidence 999999999999999999999999888899999999999999999999999999999999999999999876 6789999
Q ss_pred ccCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q 009026 484 LENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 529 (546)
Q Consensus 484 ~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~ 529 (546)
+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...|
T Consensus 478 ~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 478 GETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred CCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 9999999999999999999999999999999999999999998866
No 6
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.5e-105 Score=863.15 Aligned_cols=507 Identities=27% Similarity=0.444 Sum_probs=479.7
Q ss_pred ccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcC--CCCEEEecCHHHHHHhccccChHHHHHHHHHHHh
Q 009026 15 KEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH--LDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (546)
Q Consensus 15 ~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~--~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (546)
+++.+..++ ++++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~-~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 3 KDGAQEEKG-ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCccccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 455556556 5999999999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred hhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC-CCHHHHHHHHHhhhcc
Q 009026 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVAS 171 (546)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~-~~~~~l~~i~~t~l~s 171 (546)
++++||||||+|+|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++... +. .+.+.|.++++|+++|
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~~l~~ia~t~lss 159 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSS--DEEAFREDLLNIARTTLSS 159 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCccc--ccchhHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999886311 11 2467899999999999
Q ss_pred ccc-CchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccC-CCCcccccCceEEEEEeecc
Q 009026 172 KQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-VGSIKNMEKAKVAVFAGGVD 249 (546)
Q Consensus 172 k~~-~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~-~~~~~~i~n~kI~ll~~~l~ 249 (546)
|+. .++++|++++++|+.++.+ .+++++|++++++||+++||++++|+++++.+ ..|++.++||||++++++|+
T Consensus 160 k~~~~~~~~l~~l~~~A~~~v~~----~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le 235 (517)
T cd03336 160 KILTQDKEHFAELAVDAVLRLKG----SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMD 235 (517)
T ss_pred cccchhHHHHHHHHHHHHHHhhc----cCCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCC
Confidence 964 4689999999999999853 37888999999999999999999999999887 45799999999999999999
Q ss_pred cccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHH
Q 009026 250 TSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCR 328 (546)
Q Consensus 250 ~~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~ 328 (546)
+++++. ++++.+++++++..+.+.|+++++++++.|++.|++++++++.|++.+++||.++||++++++++++|+|||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~ 315 (517)
T cd03336 236 TDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLAL 315 (517)
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 999987 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 009026 329 TTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 408 (546)
Q Consensus 329 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~ 408 (546)
+|||++++++++++++++|+|+.|++..+|+++|.+|++|+ .+++|||+|||+|+.+++|.||+++||++++++++++|
T Consensus 316 ~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 316 VTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVA-AGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred HhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccC-CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999997 47899999999999999999999999999999999999
Q ss_pred eeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCc
Q 009026 409 RIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 488 (546)
Q Consensus 409 ~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~ 488 (546)
++||||||+|++++..|++++++.++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|+
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGT 474 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCC
Confidence 99999999999999999999888899999999999999999999999999999999999999999887788999999999
Q ss_pred ccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q 009026 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 529 (546)
Q Consensus 489 i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~ 529 (546)
+.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 475 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 475 VGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred ccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 99999999999999999999999999999999999999876
No 7
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=5.6e-105 Score=865.26 Aligned_cols=513 Identities=27% Similarity=0.455 Sum_probs=483.0
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcC-----CCCEEEecCHHHHHHhccccChHHHHH
Q 009026 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH-----LDKLFVTNDAATIVNELEVQHPAAKLL 85 (546)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~-----~g~~~iTnDg~tIl~~l~~~hP~a~ll 85 (546)
..+++++.+..++ ++++..|+.||..++++++|||||+||+|||+++ .|+++|||||+|||++|+++||+++|+
T Consensus 8 ~~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll 86 (533)
T PTZ00212 8 PQVLKQGAQEEKG-ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKIL 86 (533)
T ss_pred hHHhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHH
Confidence 3466888777777 6999999999999999999999999999999998 599999999999999999999999999
Q ss_pred HHHHHHhhhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHH
Q 009026 86 VLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRM 165 (546)
Q Consensus 86 ~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~ 165 (546)
++++++|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++++.+... -+..+.+.|.+++
T Consensus 87 ~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~-~~~~~~~~l~~va 165 (533)
T PTZ00212 87 VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGS-DEEKFKEDLLNIA 165 (533)
T ss_pred HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCc-cchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876211 0111267899999
Q ss_pred Hhhhccccc-CchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC-CCcccccCceEEE
Q 009026 166 KAAVASKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAV 243 (546)
Q Consensus 166 ~t~l~sk~~-~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~-~~~~~i~n~kI~l 243 (546)
+|+++||+. .+.+.|++++++|+..+.+ .++++.|++++++||+++||++++|+++++++. .|+++++||||++
T Consensus 166 ~t~l~sk~~~~~~~~l~~i~~~av~~i~~----~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll 241 (533)
T PTZ00212 166 RTTLSSKLLTVEKDHFAKLAVDAVLRLKG----SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILV 241 (533)
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHHhc----cCCccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEE
Confidence 999999964 4679999999999999854 278889999999999999999999999998764 5799999999999
Q ss_pred EEeecccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHH
Q 009026 244 FAGGVDTSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFE 322 (546)
Q Consensus 244 l~~~l~~~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~ 322 (546)
++++||+++++. ++++.+++++++..+.+.|+++++++++.|++.|+++++++++|++.+++||.++||++++++++++
T Consensus 242 ~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~ 321 (533)
T PTZ00212 242 ANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDG 321 (533)
T ss_pred EeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHH
Confidence 999999999987 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 009026 323 LRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYK 402 (546)
Q Consensus 323 l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~ 402 (546)
++|||++|||++++++++++++++|+|+.|++..+|+++|++|++|+ .+++|||+|||+|+.+++|+||+++||+++++
T Consensus 322 l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~ 400 (533)
T PTZ00212 322 MERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCA-KGEACTIVLRGASTHILDEAERSLHDALCVLS 400 (533)
T ss_pred HHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccC-CCCEEEEEEECCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 48899999999999999999999999999999
Q ss_pred HHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeE
Q 009026 403 AMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGI 482 (546)
Q Consensus 403 ~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gi 482 (546)
+++++|++||||||+|++++.+|+++++...+++++++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+
T Consensus 401 ~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~ 480 (533)
T PTZ00212 401 QTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGI 480 (533)
T ss_pred HHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccce
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999887788999
Q ss_pred eccCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q 009026 483 DLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 530 (546)
Q Consensus 483 d~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~ 530 (546)
|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|.
T Consensus 481 d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 528 (533)
T PTZ00212 481 DMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPR 528 (533)
T ss_pred eccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCCc
Confidence 999999999999999999999999999999999999999999988653
No 8
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6e-105 Score=865.48 Aligned_cols=503 Identities=31% Similarity=0.509 Sum_probs=474.2
Q ss_pred ccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCCc
Q 009026 21 MSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 21 ~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 100 (546)
.++ +++++.|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 4 ~~~-~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 4 TSG-QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 345 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHh-hhhccCCCCCCCCHHHHHHHHHhhhcccccC-chh
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE-LVEEGSENMDVRNTEEVIYRMKAAVASKQFG-QEE 178 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~ 178 (546)
||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++ ++++ ++..+++.|.++++|+++||+.+ +.+
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~----~~~~~~~~l~~ia~tsl~sK~~~~~~~ 158 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSIS----VDNLGKESLINVAKTSMSSKIIGADSD 158 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccC----CCccCHHHHHHHHHHHhcccccchhHH
Confidence 99999999999999999999999999999999999999999986 7765 24457889999999999999654 469
Q ss_pred hHHHHHHHHHHHhcC---CCCCcccccchhhhhcCCCCcccceeEeeEEEeccC--CCCcccccCceEEEEEeecccccc
Q 009026 179 ILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGGVDTSAT 253 (546)
Q Consensus 179 ~ls~lv~~a~~~v~~---~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~--~~~~~~i~n~kI~ll~~~l~~~~~ 253 (546)
+|++++++|+..++. ++...+++++|+|++++||++.+|++++|++|++++ .+|+++++||||++++++|++.++
T Consensus 159 ~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~ 238 (527)
T cd03335 159 FFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKM 238 (527)
T ss_pred HHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCcc
Confidence 999999999999952 222248889999999999999999999999999887 368999999999999999999999
Q ss_pred cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009026 254 ETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (546)
Q Consensus 254 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ 333 (546)
+.++++.++++++++.+.+.|++++++++++|.+.|++|||++++|++.+++||.++||++++++++++|+|||++|||+
T Consensus 239 ~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ 318 (527)
T cd03335 239 KLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGAT 318 (527)
T ss_pred ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCC------CCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 009026 334 AMLKLCQPN------PDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 407 (546)
Q Consensus 334 ii~~l~~l~------~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~ 407 (546)
+++++++++ ++++|+|++|++.++|+++|++|++|+ .+++|||+|||+|+.+++|++|+++||++++++++++
T Consensus 319 ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~-~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~ 397 (527)
T cd03335 319 LVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTK-KRSSASIILRGANDFMLDEMERSLHDALCVVKRTLES 397 (527)
T ss_pred EecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCC-CCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999886553 347999999999999999999999997 4899999999999999999999999999999999999
Q ss_pred CeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcC--------CCc
Q 009026 408 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG--------KTK 479 (546)
Q Consensus 408 ~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~--------~~~ 479 (546)
|++|||||++|++++.+|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|++.|.++ +.+
T Consensus 398 ~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~ 477 (527)
T cd03335 398 NSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKW 477 (527)
T ss_pred CCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCce
Confidence 999999999999999999999888899999999999999999999999999999999999999999875 357
Q ss_pred eeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q 009026 480 VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 529 (546)
Q Consensus 480 ~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~ 529 (546)
+|+|+.+|++.||++.|||||+.+|.++|++|+|+|++|||||++|..+|
T Consensus 478 ~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 478 YGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred EeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 89999999999999999999999999999999999999999999998765
No 9
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.4e-105 Score=863.80 Aligned_cols=511 Identities=28% Similarity=0.465 Sum_probs=481.2
Q ss_pred cccc--ccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHH
Q 009026 13 MLKE--GHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (546)
Q Consensus 13 ~~~~--~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 90 (546)
++++ +.+..++ ++++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++++
T Consensus 13 ~~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~ 91 (532)
T TIGR02343 13 IIKDQDKKKRLKG-LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSK 91 (532)
T ss_pred hhccccccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHH
Confidence 4566 4556666 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhc
Q 009026 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (546)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (546)
+|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++... +..+++.|.++++|+++
T Consensus 92 ~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~ia~t~l~ 169 (532)
T TIGR02343 92 SQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISD--DNNNKEPLIQAAKTSLG 169 (532)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCc--CCCCHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999886321 34568899999999999
Q ss_pred ccccC-chhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEEee
Q 009026 171 SKQFG-QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGG 247 (546)
Q Consensus 171 sk~~~-~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~~~ 247 (546)
+|+.+ +.+.|++++++|+..+.+.....+|+++|+|.+++||+++||++++|++|++++. +||+.++||||++++++
T Consensus 170 sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~ 249 (532)
T TIGR02343 170 SKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCP 249 (532)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEee
Confidence 99644 5899999999999998643223589999999999999999999999999999874 78999999999999999
Q ss_pred cccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009026 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (546)
Q Consensus 248 l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia 327 (546)
|++++++.++++.+++++++..+.+.|++++++++++|++.|++||+|+++|++.+++||.++||++++++++++|+|||
T Consensus 250 le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia 329 (532)
T TIGR02343 250 FEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIA 329 (532)
T ss_pred ccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccccCCCCCCCcccceeEEEEEECC--eEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHh
Q 009026 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (546)
Q Consensus 328 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~ 405 (546)
++|||++++++++++++++|+|+.|++.++|+ ++|++|++|+ .++.+||+|||+|+.+++|+||+++||++++++++
T Consensus 330 ~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~-~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i 408 (532)
T TIGR02343 330 IATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCK-NSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLI 408 (532)
T ss_pred HHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997 4899999987 47899999999999999999999999999999999
Q ss_pred hCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcC-CCceeEec
Q 009026 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGIDL 484 (546)
Q Consensus 406 ~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~-~~~~Gid~ 484 (546)
+++++||||||+|++++.+|++++...++.+++++++||+||+.||++|++|||+|+.+++.+|++.|..+ +.++|+|+
T Consensus 409 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~ 488 (532)
T TIGR02343 409 KNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDC 488 (532)
T ss_pred hCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeC
Confidence 99999999999999999999999888899999999999999999999999999999999999999999754 56799999
Q ss_pred cCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q 009026 485 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMA 527 (546)
Q Consensus 485 ~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~ 527 (546)
.+|.+.||++.|||||+.+|+++|+.|+|+|++|||||++|.+
T Consensus 489 ~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 489 LGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred CCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 9999999999999999999999999999999999999999964
No 10
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-104 Score=863.30 Aligned_cols=510 Identities=28% Similarity=0.501 Sum_probs=482.0
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHh
Q 009026 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (546)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (546)
+++++.+..++ .+++.+|+.||.+++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 82 (522)
T cd03340 4 LLKEGTDTSQG-KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQ 82 (522)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHh
Confidence 56777777777 48999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCCCHHHHHHHHHhhhcc
Q 009026 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENM-DVRNTEEVIYRMKAAVAS 171 (546)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~~l~~i~~t~l~s 171 (546)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|++++++ +.+. +..+++.|.++++|+++|
T Consensus 83 ~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~-~~~~~~~~~~~~l~~ia~t~l~s 161 (522)
T cd03340 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVN-IDKEDKEEQRELLEKCAATALNS 161 (522)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcc-cCcccccccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999876 2200 012477899999999999
Q ss_pred ccc-CchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC-----CCcccccCceEEEEE
Q 009026 172 KQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEKAKVAVFA 245 (546)
Q Consensus 172 k~~-~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~-----~~~~~i~n~kI~ll~ 245 (546)
|+. .+.++|++++++|+.++.++ ++.++|+|+++.||++.||++++|++|++++. .||+.++||||++++
T Consensus 162 K~~~~~~~~l~~l~~~A~~~v~~~----~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~ 237 (522)
T cd03340 162 KLIASEKEFFAKMVVDAVLSLDDD----LDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLN 237 (522)
T ss_pred CcchhHHHHHHHHHHHHHHHhccc----CChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEe
Confidence 964 56899999999999999653 67889999999999999999999999999863 468999999999999
Q ss_pred eecccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHH
Q 009026 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (546)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ 325 (546)
++|++.+++.+.++.++++++++.+.+.|+++++++++++.+.|++||+++++|+|.+++||.++||++++++++++|+|
T Consensus 238 ~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~r 317 (522)
T cd03340 238 VELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKR 317 (522)
T ss_pred CCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHh
Q 009026 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (546)
Q Consensus 326 ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~ 405 (546)
||++|||++++++++++++.+|+|+.|++.++|+++|++|++|+ .++.+||+|||+++.+++|+||+++||++++++++
T Consensus 318 Ia~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i 396 (522)
T cd03340 318 VAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCP-KAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAI 396 (522)
T ss_pred HHHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCC-CCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999997 48999999999999999999999999999999999
Q ss_pred hCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCC-CceeEec
Q 009026 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGK-TKVGIDL 484 (546)
Q Consensus 406 ~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~-~~~Gid~ 484 (546)
++|++||||||+|++++.+|+++++...+++++++++||+||+.||++|++|||+|+.+++.+|++.|.+++ .++|+|+
T Consensus 397 ~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~ 476 (522)
T cd03340 397 KNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDI 476 (522)
T ss_pred cCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeC
Confidence 999999999999999999999998888899999999999999999999999999999999999999998876 6899999
Q ss_pred cCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q 009026 485 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 529 (546)
Q Consensus 485 ~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~ 529 (546)
.+|++.||++.|||||+.||+++++.|+|+|++|||||++|..++
T Consensus 477 ~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 477 NNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred CCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 999999999999999999999999999999999999999997753
No 11
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.4e-105 Score=864.47 Aligned_cols=509 Identities=33% Similarity=0.590 Sum_probs=484.8
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHh
Q 009026 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (546)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (546)
+++++.+..++ ++++..|+.||.+++++++|||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~-~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 81 (517)
T cd03343 3 ILKEGTQRTSG-RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 81 (517)
T ss_pred ccCCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 35677777777 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhccc
Q 009026 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (546)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (546)
++++||||||+++|+++||+++.+++++|+||..|++||++|.+.+++.|++++.+ ++..+++.|.++++|+++||
T Consensus 82 ~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~----v~~~~~~~l~~va~ts~~sk 157 (517)
T cd03343 82 DEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIK----VDPDDKDTLRKIAKTSLTGK 157 (517)
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcc----cCCCCHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999876 24557899999999999999
Q ss_pred cc-CchhhHHHHHHHHHHHhcCCCC--CcccccchhhhhcCCCCcccceeEeeEEEeccC--CCCcccccCceEEEEEee
Q 009026 173 QF-GQEEILCPLIADACIQVCPKNP--ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGG 247 (546)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~v~~~~~--~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~--~~~~~~i~n~kI~ll~~~ 247 (546)
+. .+.++|++++++|+.++++++. ..||+++|+|.+++||++++|++++|++|++++ ..|++.++||||++++++
T Consensus 158 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~ 237 (517)
T cd03343 158 GAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAP 237 (517)
T ss_pred chhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEecc
Confidence 64 4679999999999999976432 258889999999999999999999999999997 468999999999999999
Q ss_pred cccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009026 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (546)
Q Consensus 248 l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia 327 (546)
||+++++.++++.+++++++.++.++|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|||
T Consensus 238 Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia 317 (517)
T cd03343 238 LEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLA 317 (517)
T ss_pred ccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 009026 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 407 (546)
Q Consensus 328 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~ 407 (546)
++|||++++++++++++.+|+|+.|++.++|+++|++|++|. .+..+||+|||+++.+++|++|+++||++++|+++++
T Consensus 318 ~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~ 396 (517)
T cd03343 318 RATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCK-NPKAVTILLRGGTEHVVDELERALEDALRVVADALED 396 (517)
T ss_pred HHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCC-CCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999987 4789999999999999999999999999999999999
Q ss_pred CeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCC
Q 009026 408 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG 487 (546)
Q Consensus 408 ~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g 487 (546)
|++|||||++|++++.+|++++...++++++++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|
T Consensus 397 ~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 476 (517)
T cd03343 397 GKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTG 476 (517)
T ss_pred CCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999987677899999999
Q ss_pred cccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q 009026 488 VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMA 527 (546)
Q Consensus 488 ~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~ 527 (546)
++.||++.|||||+.+|+++|+.|+|+|++|||||++|..
T Consensus 477 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 477 EVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 9999999999999999999999999999999999999965
No 12
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-104 Score=863.08 Aligned_cols=510 Identities=27% Similarity=0.452 Sum_probs=479.4
Q ss_pred cccccc--ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHH
Q 009026 13 MLKEGH--KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (546)
Q Consensus 13 ~~~~~~--~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 90 (546)
++++++ +...+ +++++.|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++++
T Consensus 9 ~~~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~ 87 (526)
T cd03339 9 IVREQEKKKRLKG-LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSK 87 (526)
T ss_pred EecCCCccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHH
Confidence 457763 45455 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhc
Q 009026 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (546)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (546)
+|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|++++++... +..+.+.|.++++|+++
T Consensus 88 ~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~ia~tsl~ 165 (526)
T cd03339 88 SQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEF--SPDNKEPLIQTAMTSLG 165 (526)
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CcccHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999886321 33578899999999999
Q ss_pred ccccC-chhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEEee
Q 009026 171 SKQFG-QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGG 247 (546)
Q Consensus 171 sk~~~-~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~~~ 247 (546)
+|+.+ +.+.|++++++|+..+.+.....+|++.|+|.+++||+++||++++|++|++++. +|++.++||||++++++
T Consensus 166 sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~ 245 (526)
T cd03339 166 SKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCP 245 (526)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEec
Confidence 99644 5799999999999998653323578889999999999999999999999999884 68999999999999999
Q ss_pred cccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009026 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (546)
Q Consensus 248 l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia 327 (546)
|++++++.+.++.+++++++..+.++|+++++++++++++.|++||+++++|++.+++||.++||++++++++++|+|||
T Consensus 246 le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa 325 (526)
T cd03339 246 FEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIA 325 (526)
T ss_pred ccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccccCCCCCCCcccceeEEEEEECC--eEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHh
Q 009026 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (546)
Q Consensus 328 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~ 405 (546)
++|||+++++++++++..+|+|+.|++.++|. ++|++|++|+ .++.+||+|||+|+.+++|+||+++||++++++++
T Consensus 326 ~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~-~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~ 404 (526)
T cd03339 326 IATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCP-NSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLI 404 (526)
T ss_pred HHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999985 6889999987 48899999999999999999999999999999999
Q ss_pred hCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcC-CCceeEec
Q 009026 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGIDL 484 (546)
Q Consensus 406 ~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~-~~~~Gid~ 484 (546)
++|++|||||++|++++.+|++++...++.+++++++||+||+.||++|++|||+|+.+++.+|+..|.++ +.++|+|+
T Consensus 405 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~ 484 (526)
T cd03339 405 RDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDC 484 (526)
T ss_pred hCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeec
Confidence 99999999999999999999999888889999999999999999999999999999999999999999653 56899999
Q ss_pred cCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhh
Q 009026 485 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIM 526 (546)
Q Consensus 485 ~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~ 526 (546)
.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 485 ~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 485 LGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred CCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 999999999999999999999999999999999999999873
No 13
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-104 Score=859.74 Aligned_cols=500 Identities=29% Similarity=0.531 Sum_probs=477.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCCchhHH
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 104 (546)
.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||++
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTtt~v 87 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTTSVV 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccc-cCchhhHHHH
Q 009026 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPL 183 (546)
Q Consensus 105 lL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~l 183 (546)
+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++| ++..+.+.|.++++|++++|+ ..+.++|+++
T Consensus 88 iLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~----~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 88 ILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIP----VDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccc----cCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999876 255688899999999999995 4678999999
Q ss_pred HHHHHHHhcCC-CCCcccccchhhhhcCCCCcccceeEeeEEEeccCC---CCcccccCceEEEEEeecccccccccceE
Q 009026 184 IADACIQVCPK-NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---GSIKNMEKAKVAVFAGGVDTSATETKGTV 259 (546)
Q Consensus 184 v~~a~~~v~~~-~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~---~~~~~i~n~kI~ll~~~l~~~~~~~~~~v 259 (546)
+++|+..+.+. ....|++++|+|+++.||++++|++++|++|++++. +||++++||||++++++|++++++...++
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~ 243 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQV 243 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceE
Confidence 99999999752 112588999999999999999999999999999874 67999999999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcc-----cHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCee
Q 009026 260 LIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVA 334 (546)
Q Consensus 260 ~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i-----~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~i 334 (546)
.++++++++.+.++|+++++++++++++.|++||+|+++| ++++++||.++||++++++++++|+|||++|||++
T Consensus 244 ~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~i 323 (517)
T TIGR02342 244 IVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKP 323 (517)
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEE
Confidence 9999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCC
Q 009026 335 MLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGA 414 (546)
Q Consensus 335 i~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGG 414 (546)
+++++++++.++|+|+.|++.++|+.+|+++.+++..++.+||+|||+|+.+++|+||+++||+++++++++++++||||
T Consensus 324 i~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGG 403 (517)
T TIGR02342 324 IASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGG 403 (517)
T ss_pred EcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECc
Confidence 99999999999999999999999999999999987545899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCccccccc
Q 009026 415 AATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADIST 494 (546)
Q Consensus 415 G~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~ 494 (546)
||+|++++.+|++++++.++.+++++++||+|||.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++.||++
T Consensus 404 Ga~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~ 483 (517)
T TIGR02342 404 GAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLE 483 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhh
Confidence 99999999999999888899999999999999999999999999999999999999999887788999999999999999
Q ss_pred CccccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q 009026 495 MNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 528 (546)
Q Consensus 495 ~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~ 528 (546)
.|||||+.+|+++|+.|+|+|++|||||++|..+
T Consensus 484 ~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~~ 517 (517)
T TIGR02342 484 EEVLQPLLVTTSAVTLASETVRMILKIDDIVFTR 517 (517)
T ss_pred ccceEcHHHHHHHHHHHHHHHHHHhcccceeecC
Confidence 9999999999999999999999999999998764
No 14
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.1e-103 Score=849.53 Aligned_cols=509 Identities=26% Similarity=0.438 Sum_probs=479.6
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCC--CCEEEecCHHHHHHhccccChHHHHHHHHHHH
Q 009026 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL--DKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (546)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~--g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~ 91 (546)
++++.+..++ ++++.+|+.||.+++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|+++++++
T Consensus 3 ~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 3 FKDNAQEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred ccCCCccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 4566666666 58999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred hhhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC-CCHHHHHHHHHhhhc
Q 009026 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVA 170 (546)
Q Consensus 92 ~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~-~~~~~l~~i~~t~l~ 170 (546)
|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++... +. .+.+.|.++++|+++
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~~L~~ia~t~l~ 159 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGS--DKTKFRDDLLNIARTTLS 159 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccC--cccccHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999886311 11 146889999999999
Q ss_pred ccccC-chhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC-CCcccccCceEEEEEeec
Q 009026 171 SKQFG-QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVFAGGV 248 (546)
Q Consensus 171 sk~~~-~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~-~~~~~i~n~kI~ll~~~l 248 (546)
+|+.+ +.+.|++++++|+..+.+. .+.++|++.+++||++++|++++|+++++.+. .||+.++||||++++++|
T Consensus 160 ski~~~~~~~~s~l~~~av~~i~~~----~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~L 235 (519)
T TIGR02341 160 SKILSQHKDHFAQLAVDAVLRLKGS----GNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPM 235 (519)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccC----CChhheEEEEccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCC
Confidence 99654 5789999999999998432 46678999999999999999999999999875 578899999999999999
Q ss_pred ccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHH
Q 009026 249 DTSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (546)
Q Consensus 249 ~~~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia 327 (546)
++.+++. ++++.+++++++..+.+.|+++++++++.|++.|++++++++.|++.+++||.+++|++++++++.+|+|||
T Consensus 236 e~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia 315 (519)
T TIGR02341 236 DTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLA 315 (519)
T ss_pred CCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence 9999987 888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 009026 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 407 (546)
Q Consensus 328 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~ 407 (546)
++|||++++++++++++++|+|+.|++..+|+++|.+|++|+ .++.+||+|||+|+.+++|+||+++||++++++++++
T Consensus 316 ~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~-~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~ 394 (519)
T TIGR02341 316 LVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVK-LGEACTIVLRGATQQILDESERSLHDALCVLSQTVKE 394 (519)
T ss_pred HHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999997 4889999999999999999999999999999999999
Q ss_pred CeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCC
Q 009026 408 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG 487 (546)
Q Consensus 408 ~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g 487 (546)
+++||||||+|++++..|++++++.++++++++++||+||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+|
T Consensus 395 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g 474 (519)
T TIGR02341 395 SRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEG 474 (519)
T ss_pred CCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999988777899999999
Q ss_pred cccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q 009026 488 VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 530 (546)
Q Consensus 488 ~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~ 530 (546)
++.||++.|||||+.||+++|+.|+|+|++|||||++|..+|.
T Consensus 475 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 475 EIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred cccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999884
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3e-103 Score=850.50 Aligned_cols=509 Identities=29% Similarity=0.482 Sum_probs=481.6
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHh
Q 009026 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (546)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (546)
+++++.+..++ .+++..|+.||.+++++++|||||+||+|||+++.| ++|||||+|||++|+++||+++|+++++++|
T Consensus 6 ~~~~~~~~~~~-~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q 83 (522)
T TIGR02345 6 LLKEGTDTSQG-KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQ 83 (522)
T ss_pred hhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHH
Confidence 56788777777 489999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhccc
Q 009026 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (546)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (546)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++. ...+..+.+.|.++++|+++||
T Consensus 84 ~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~-~~~~~~~~~~l~~va~tsl~sK 162 (522)
T TIGR02345 84 DSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTI-DEVKGEQREVLEKCAATALNSK 162 (522)
T ss_pred HHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCc-CCcccccHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999998762 2112235688999999999999
Q ss_pred cc-CchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccC-----CCCcccccCceEEEEEe
Q 009026 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-----VGSIKNMEKAKVAVFAG 246 (546)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~-----~~~~~~i~n~kI~ll~~ 246 (546)
+. .++++|++++++|+.+++++ .+|+++|+|+++.||+++||++++|++|++++ .+||++++||||+++++
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~ 239 (522)
T TIGR02345 163 LIAHEKEFFSKMIVDAVLQLDID---DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV 239 (522)
T ss_pred cccchHHHHHHHHHHHHHHHhhc---cCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEec
Confidence 64 56899999999999999754 38889999999999999999999999999886 34689999999999999
Q ss_pred ecccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHH
Q 009026 247 GVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRF 326 (546)
Q Consensus 247 ~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~i 326 (546)
+|++.+.+.+..+.++++++++.+.+.|+++++++++++++.|++||+|+++|++.+++||.++||+++++++++++++|
T Consensus 240 ~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ri 319 (522)
T TIGR02345 240 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRV 319 (522)
T ss_pred CcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 009026 327 CRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 406 (546)
Q Consensus 327 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~ 406 (546)
+++|||++++++++++++.+|+|+.|++.++++++|.+|++++ .+++|||+|||+|+.+++|.+|+++||+++++++++
T Consensus 320 a~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~-~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~ 398 (522)
T TIGR02345 320 VKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCP-HAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALK 398 (522)
T ss_pred HHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCC-CCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999997 478999999999999999999999999999999999
Q ss_pred CCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccC
Q 009026 407 DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLEN 486 (546)
Q Consensus 407 ~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~ 486 (546)
++++||||||+|++++.+|++++++..+++++++++||+||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+
T Consensus 399 ~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~ 478 (522)
T TIGR02345 399 ARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINT 478 (522)
T ss_pred CCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCC
Confidence 98999999999999999999998888899999999999999999999999999999999999999998777789999999
Q ss_pred CcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q 009026 487 GVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 528 (546)
Q Consensus 487 g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~ 528 (546)
|++.||++.|||||+.||+++|+.|+|+|++|||||++|..+
T Consensus 479 ~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 479 EDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred CcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 999999999999999999999999999999999999999774
No 16
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-103 Score=851.24 Aligned_cols=503 Identities=30% Similarity=0.534 Sum_probs=477.8
Q ss_pred cccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCC
Q 009026 20 HMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDG 99 (546)
Q Consensus 20 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 99 (546)
+.++ .+++++|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 3 ~~~~-~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 3 KEKP-ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred cccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 3344 478899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccc-cCchh
Q 009026 100 ANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEE 178 (546)
Q Consensus 100 ttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~ 178 (546)
|||+++|+++||+++.+|+++|+||..|++||+.|.+.++++|++++.+ ++..|.+.|.++++|+++||+ +.+++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~----v~~~~~~~l~~va~ts~~sK~~~~~~~ 157 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIP----VDLNDRESLIKSATTSLNSKVVSQYSS 157 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccC----CCCCCHHHHHHHHHHHhccccchhhHH
Confidence 9999999999999999999999999999999999999999999999875 255678899999999999996 45789
Q ss_pred hHHHHHHHHHHHhcCCCC-CcccccchhhhhcCCCCcccceeEeeEEEeccCCC---CcccccCceEEEEEeeccccccc
Q 009026 179 ILCPLIADACIQVCPKNP-ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVG---SIKNMEKAKVAVFAGGVDTSATE 254 (546)
Q Consensus 179 ~ls~lv~~a~~~v~~~~~-~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~~---~~~~i~n~kI~ll~~~l~~~~~~ 254 (546)
+|++++++|+.++++++. ..+|+++|+|.+..||+++||++++|++|++++.+ ||+.++|||+++++|+|++.+++
T Consensus 158 ~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~ 237 (515)
T cd03338 158 LLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTD 237 (515)
T ss_pred HHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccc
Confidence 999999999999987542 36899999999999999999999999999999853 48899999999999999999999
Q ss_pred ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcc-----cHHHHHHHHHCCeEEEEecCHHHHHHHHHH
Q 009026 255 TKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRT 329 (546)
Q Consensus 255 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i-----~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~ 329 (546)
.+.++.++++++++.+.++|++++++++++|++.|++|||++++| ++++++||+++||++++++++++|+|||++
T Consensus 238 ~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~ 317 (515)
T cd03338 238 MDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKT 317 (515)
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred hCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCe
Q 009026 330 TGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409 (546)
Q Consensus 330 tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~ 409 (546)
|||++++++++++++++|+|+.|++.++|+++|.+|++|+.++++|||+|||+|+.+++|+||+++||++++++++++|+
T Consensus 318 tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~ 397 (515)
T cd03338 318 IGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRA 397 (515)
T ss_pred HCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999973368999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcc
Q 009026 410 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVC 489 (546)
Q Consensus 410 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i 489 (546)
+||||||+|++|+.+|++++...++.+++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++
T Consensus 398 vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~ 477 (515)
T cd03338 398 LIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAI 477 (515)
T ss_pred EEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCc
Confidence 99999999999999999998888899999999999999999999999999999999999999998777789999999999
Q ss_pred cccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q 009026 490 ADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMA 527 (546)
Q Consensus 490 ~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~ 527 (546)
.||++.|||||+.+|+++++.|+|+|++|||||++|.+
T Consensus 478 ~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 478 TNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 99999999999999999999999999999999999863
No 17
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-102 Score=848.86 Aligned_cols=505 Identities=30% Similarity=0.499 Sum_probs=474.4
Q ss_pred cccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCC
Q 009026 20 HMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDG 99 (546)
Q Consensus 20 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 99 (546)
..++ +++++.|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 7 ~~~~-~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 7 RTSG-QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred eecH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 4445 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhh-hhccCCCCCCCCHHHHHHHHHhhhccccc-Cch
Q 009026 100 ANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEEL-VEEGSENMDVRNTEEVIYRMKAAVASKQF-GQE 177 (546)
Q Consensus 100 ttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~ 177 (546)
|||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++. +++ ++..+.+.|.++++|+++||+. .++
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~----~~~~~~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVS----VDELGREALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccC----CCcccHHHHHHHHHHHhccccchhhH
Confidence 9999999999999999999999999999999999999999999875 664 2445788999999999999964 468
Q ss_pred hhHHHHHHHHHHHhcC---CCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEEeeccccc
Q 009026 178 EILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSA 252 (546)
Q Consensus 178 ~~ls~lv~~a~~~v~~---~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~~~l~~~~ 252 (546)
++|++++++|+..++. ++...+++++|+++++.||++++|++++|++|++++. .|++.++||||++++++|++.+
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~ 241 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQK 241 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCc
Confidence 9999999999999952 2333578899999999999999999999999998874 7899999999999999999999
Q ss_pred ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009026 253 TETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (546)
Q Consensus 253 ~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa 332 (546)
++.++++.++++.+++.+.+.|++++++++++|.+.+++||+++++|++.+++||.++||++++++++++|+|||++|||
T Consensus 242 ~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa 321 (536)
T TIGR02340 242 MALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGG 321 (536)
T ss_pred ccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCC------CCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 009026 333 VAMLKLCQP------NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 406 (546)
Q Consensus 333 ~ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~ 406 (546)
++++++.++ +++.+|+|++|++.++|+++|++|++++ .++++||+|||+|+.+++|++|+++||+++++++++
T Consensus 322 ~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~-~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~ 400 (536)
T TIGR02340 322 TLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTK-GRKSASIILRGANDFMLDEMERSLHDALCVVKRTLE 400 (536)
T ss_pred EEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCC-CCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999987554 3455999999999999999999999987 478999999999999999999999999999999999
Q ss_pred CCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcC--------CC
Q 009026 407 DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG--------KT 478 (546)
Q Consensus 407 ~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~--------~~ 478 (546)
+|++|||||++|++++.+|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|+..|.++ +.
T Consensus 401 ~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~ 480 (536)
T TIGR02340 401 SNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLK 480 (536)
T ss_pred CCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCc
Confidence 9999999999999999999998888889999999999999999999999999999999999999999765 34
Q ss_pred ceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q 009026 479 KVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 530 (546)
Q Consensus 479 ~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~ 530 (546)
++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|..+|.
T Consensus 481 ~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~ 532 (536)
T TIGR02340 481 WYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPE 532 (536)
T ss_pred eEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 7999999999999999999999999999999999999999999999988764
No 18
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-102 Score=756.45 Aligned_cols=500 Identities=28% Similarity=0.531 Sum_probs=478.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCCchhHH
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 104 (546)
++.|.+||+|++++++.++|||||+||||||+++.|+++|||||+|||+.|++-||+++|+++++.+||.++||||||||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTTsVV 104 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTTSVV 104 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccc-cCchhhHHHH
Q 009026 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPL 183 (546)
Q Consensus 105 lL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~l 183 (546)
+|+|+||+.+.+|+++|+||+.|.+.|+.|.+.++++|++++.| ++++|++.|.+-+.|+|+||. +.++..++++
T Consensus 105 ilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~----velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 105 ILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVP----VELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred EehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCC----cccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 99999999999999999999999999999999999999999986 478999999999999999995 6788999999
Q ss_pred HHHHHHHhcC-CCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEEeecccccccccceEE
Q 009026 184 IADACIQVCP-KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVL 260 (546)
Q Consensus 184 v~~a~~~v~~-~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~~~l~~~~~~~~~~v~ 260 (546)
.++|+.++.. .+..++|+.+|+|.|..||.++|+++++|++|++... .-|++++++||-++.|.+.++|+++..++.
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~ii 260 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQII 260 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceE
Confidence 9999999854 4445789999999999999999999999999998763 368999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcc-----cHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeec
Q 009026 261 IHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (546)
Q Consensus 261 i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i-----~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ii 335 (546)
++++.+++++.++|++|+.++|++|++.|+||++.|++| +|++++||++.+|+|++.+.++|+|.+|+.+|+.|+
T Consensus 261 v~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pi 340 (534)
T KOG0358|consen 261 VNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPI 340 (534)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeec
Confidence 999999999999999999999999999999999999876 889999999999999999999999999999999999
Q ss_pred cccCCCCCCCcccceeEEEEEEC-CeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCC
Q 009026 336 LKLCQPNPDDLGYVDSVSVEEIG-GARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGA 414 (546)
Q Consensus 336 ~~l~~l~~~~lG~~~~v~~~~ig-~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGG 414 (546)
.+++.++++.+|+++.+++..-+ +.++..+.++.+.++++||++||++.-.++|.+|++|||||++|++.+.+.++|||
T Consensus 341 a~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 341 ADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred chhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 99999999999999999988554 45899999987668999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCccccccc
Q 009026 415 AATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADIST 494 (546)
Q Consensus 415 G~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~ 494 (546)
|+.|+.+|..|.+++....|.+.|+.++||+|||.||.||++|+|++|+.++++||+.|.+|+.++||+++.|.+.||.+
T Consensus 421 GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~e 500 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILE 500 (534)
T ss_pred CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q 009026 495 MNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 528 (546)
Q Consensus 495 ~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~ 528 (546)
+.|+.|+.|-.+++..|+|++.+||+||+++.++
T Consensus 501 e~VvQPllVs~SaitlA~Etvr~ILKIDDIv~ar 534 (534)
T KOG0358|consen 501 ENVVQPLLVSISAITLATETVRSILKIDDIVNAR 534 (534)
T ss_pred HhcccceeeeHHHHHHHHHHHHHHhhhhhhcccC
Confidence 9999999999999999999999999999998653
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.5e-101 Score=824.28 Aligned_cols=477 Identities=27% Similarity=0.441 Sum_probs=450.0
Q ss_pred cccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhh
Q 009026 16 EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEE 95 (546)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~ 95 (546)
++.+..++ .+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|+++
T Consensus 3 ~~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~ 81 (484)
T cd03342 3 PKAEVLRR-GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDI 81 (484)
T ss_pred CCcccccH-HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhH
Confidence 34455556 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC-CCHHHHHHHHHhhhcccc-
Q 009026 96 IGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVASKQ- 173 (546)
Q Consensus 96 ~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~-~~~~~l~~i~~t~l~sk~- 173 (546)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|++++.+. +. .|.+.+.++++|++++|+
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v----~~~~~~~~l~~va~ts~~sk~~ 157 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPV----EIDTDRELLLSVARTSLRTKLH 157 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHhCcccc
Confidence 999999999999999999999999999999999999999999999999998752 32 478899999999999995
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccC--CCCcccccCceEEEEEeecccc
Q 009026 174 FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGGVDTS 251 (546)
Q Consensus 174 ~~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~--~~~~~~i~n~kI~ll~~~l~~~ 251 (546)
..+.++|++++++|+..+++++. .||+++|++++++||+++||++++|++|++++ ..|+++++||||++++++|++.
T Consensus 158 ~~~~~~l~~l~~~A~~~v~~~~~-~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~ 236 (484)
T cd03342 158 ADLADQLTEIVVDAVLAIYKPDE-PIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYE 236 (484)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCC-ccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCC
Confidence 45789999999999999987542 58999999999999999999999999999887 4689999999999999999999
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhC
Q 009026 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (546)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tG 331 (546)
+++.+.++.++ ||||+++|++.+++||.++||++++++++++|+|||++||
T Consensus 237 ~~~~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tG 287 (484)
T cd03342 237 KTEVNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACG 287 (484)
T ss_pred ccccCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC
Confidence 88877665542 9999999999999999999999999999999999999999
Q ss_pred CeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeee
Q 009026 332 AVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIV 411 (546)
Q Consensus 332 a~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vv 411 (546)
|++++++++++++++|+|++|+++++|+++|++|++|+ .++.+||+|||+|+.+++|+||+++||++++++++++|++|
T Consensus 288 a~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~-~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~v 366 (484)
T cd03342 288 GVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVK-NPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVV 366 (484)
T ss_pred CEEecccccCChhhCcccceEEEEEECCeEEEEEECCC-CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 99999999999999999999999999999999999997 48899999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccc
Q 009026 412 PGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCAD 491 (546)
Q Consensus 412 pGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d 491 (546)
|||||+|++++.+|++++...++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++.|
T Consensus 367 pGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d 446 (484)
T cd03342 367 PGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMD 446 (484)
T ss_pred eCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccc
Confidence 99999999999999999888899999999999999999999999999999999999999999887778999999999999
Q ss_pred cccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q 009026 492 ISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 528 (546)
Q Consensus 492 ~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~ 528 (546)
|++.|||||+.+|+++|+.|+|+|++|||||++|..+
T Consensus 447 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 447 PESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred hhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 9999999999999999999999999999999999764
No 20
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-101 Score=770.19 Aligned_cols=536 Identities=54% Similarity=0.842 Sum_probs=513.3
Q ss_pred CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccCh
Q 009026 1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP 80 (546)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP 80 (546)
|++.+|++++..++++|.++.++.+++...|+.||++++++++|+|||+||+||++|+.|++++|||.+||+++|+++||
T Consensus 1 M~~~vp~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HP 80 (537)
T KOG0362|consen 1 MALTVPKAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHP 80 (537)
T ss_pred CCccCCCCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHH
Q 009026 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEE 160 (546)
Q Consensus 81 ~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~ 160 (546)
+|||++++++.|+++.||||++||+|+++||++|.+||..|++|..|++||+.|.+.+++.|+++.+.... |.+|.+
T Consensus 81 aakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~--d~~d~~- 157 (537)
T KOG0362|consen 81 AAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIG--DLEDKE- 157 (537)
T ss_pred HHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcc--cccChH-
Confidence 99999999999999999999999999999999999999999999999999999999999999998776554 666766
Q ss_pred HHHHHHhhhcccccCchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCCCCcccccCce
Q 009026 161 VIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240 (546)
Q Consensus 161 l~~i~~t~l~sk~~~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~~~~~~i~n~k 240 (546)
++++|+++||...+.+++++++++|+.++.|.+. |++++|+++|+.||++++|+++.|++|++.+.+.++.-+.+|
T Consensus 158 --~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~--FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~v~~ak~ar 233 (537)
T KOG0362|consen 158 --WALRSVIMSKQYGNEDFLTKLVAKACVSILPLMS--FNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGEVKSAKDAR 233 (537)
T ss_pred --HHHHHHHHHhhcchHHHHHHHHHHHHHhhccccc--ccccceEEEEEecCCcccceeeEEEEeccccCCcccccccce
Confidence 8889999999888899999999999999988744 999999999999999999999999999999998888889999
Q ss_pred EEEEEeecccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCH
Q 009026 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK 320 (546)
Q Consensus 241 I~ll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~ 320 (546)
|++++||+++..+++++|+.+++++++..|.+.|+..++..++.|...|++||++.+.+++++++||++.+|++++..++
T Consensus 234 vAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk 313 (537)
T KOG0362|consen 234 VAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSK 313 (537)
T ss_pred eEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 009026 321 FELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNT 400 (546)
Q Consensus 321 ~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~ 400 (546)
.||.|+|+..||++++.+..+.+..+|+|++|..+++|+.+++.|++....++..|++|||++...+|+.||+++|++++
T Consensus 314 ~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~t 393 (537)
T KOG0362|consen 314 FDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNT 393 (537)
T ss_pred hhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999997654578999999999999999999999999999
Q ss_pred HHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCce
Q 009026 401 YKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKV 480 (546)
Q Consensus 401 l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~ 480 (546)
.+...++++++||+|++|++|+..|.+++..++|..|++++.||+||+.+|++|++|+|++..+++++|++.|. +....
T Consensus 394 yK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~-~g~~~ 472 (537)
T KOG0362|consen 394 YKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ-GGKNL 472 (537)
T ss_pred hhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc-CCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 34557
Q ss_pred eEeccCC-cccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCCCCCCCCCCCC
Q 009026 481 GIDLENG-VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQQPGGGMDED 546 (546)
Q Consensus 481 Gid~~~g-~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~~~~~~~~~~~~~~~~ 546 (546)
|+|+.-+ ...|+.++||||.+..|.+++++|+|+|.++|++|+||.++|.+||++|+ |+ +|||+
T Consensus 473 g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~~-~~-~~d~~ 537 (537)
T KOG0362|consen 473 GMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPPG-KK-PDDEK 537 (537)
T ss_pred eeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCCCCC-CC-CCCCC
Confidence 8888766 48899999999999999999999999999999999999999999999995 43 99985
No 21
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-99 Score=811.19 Aligned_cols=466 Identities=61% Similarity=0.978 Sum_probs=442.0
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCCch
Q 009026 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGAN 101 (546)
Q Consensus 22 ~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 101 (546)
.+.++++..|+.||.+|+++++|||||+|++|||+++.|++++||||+|||++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhHH
Q 009026 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILC 181 (546)
Q Consensus 102 t~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ls 181 (546)
|+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++.+.+. +..+.+.+.++++|+++||..+++++|+
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~i~~t~l~sk~~~~~~~l~ 161 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIE--DLRNKEEVSKALKTAIASKQYGNEDFLS 161 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccC--CccCHHHHHHHHHHHhcccccchHHHHH
Confidence 99999999999999999999999999999999999999999999876433 4567889999999999999767899999
Q ss_pred HHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCCCCcccccCceEEEEEeecccccccccceEEe
Q 009026 182 PLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLI 261 (546)
Q Consensus 182 ~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~~~~~~i~n~kI~ll~~~l~~~~~~~~~~v~i 261 (546)
+++++|+.++++++...|++++|+|++++||+++||++++|++|++.+.++++.++||||++++++|++
T Consensus 162 ~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~~~~~~~~n~~Ili~~~~Le~----------- 230 (472)
T cd03341 162 PLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDI----------- 230 (472)
T ss_pred HHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccCCCceeccCCcEEEEeccccC-----------
Confidence 999999999986532358999999999999999999999999999888777889999999999999876
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeeccccCCC
Q 009026 262 HNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQP 341 (546)
Q Consensus 262 ~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ii~~l~~l 341 (546)
|++||+++++|++.+++||+++||++++++++++|+|||++|||+++++++++
T Consensus 231 ---------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l 283 (472)
T cd03341 231 ---------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAP 283 (472)
T ss_pred ---------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccC
Confidence 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHH
Q 009026 342 NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIEL 421 (546)
Q Consensus 342 ~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~l 421 (546)
+++++|+|+.|++.++|+++|++|+++...++++||+|||+++.+++|+||+++||++++++++++|++|||||++|+++
T Consensus 284 ~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~l 363 (472)
T cd03341 284 TPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIEL 363 (472)
T ss_pred CHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHH
Confidence 99999999999999999999999999863378999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCC--cccccccCcccc
Q 009026 422 ARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG--VCADISTMNVWD 499 (546)
Q Consensus 422 a~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g--~i~d~~~~gi~d 499 (546)
+.+|++++...++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+| ++.||++.||||
T Consensus 364 s~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~d 443 (472)
T cd03341 364 AKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFD 443 (472)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhcccee
Confidence 999999988888999999999999999999999999999999999999999977777899999999 999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhchhhhhhc
Q 009026 500 LYVTKFFALKYAADAACTVLRVDQIIMA 527 (546)
Q Consensus 500 p~~vk~~~l~~A~e~a~~lL~iD~ii~~ 527 (546)
|+.||+++|+.|+|+|++|||||++|..
T Consensus 444 p~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 444 HLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999999999999999999999999865
No 22
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-100 Score=736.17 Aligned_cols=516 Identities=27% Similarity=0.443 Sum_probs=486.9
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcC--CCCEEEecCHHHHHHhccccChHHHHHHH
Q 009026 10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH--LDKLFVTNDAATIVNELEVQHPAAKLLVL 87 (546)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~--~g~~~iTnDg~tIl~~l~~~hP~a~ll~~ 87 (546)
+..+++++..++++ +.++.+.|.++..+.+++||||||+||+||++.. .|.+.+||||+|||+++.+++|+||++++
T Consensus 3 p~~i~~~~~~eErg-e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 3 PVQIFKDGATEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred hhhhhcccchhhhh-hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 45678999999888 6999999999999999999999999999999864 46799999999999999999999999999
Q ss_pred HHHHhhhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHh
Q 009026 88 AGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKA 167 (546)
Q Consensus 88 ~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t 167 (546)
.++.||+++|||||||++|+++||++|.+|+.+.+||+.|+.||+.|.+.|++.|.+.++.+-+ -..+-+++|.++++|
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~-~~~kfr~DLl~iarT 160 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSS-DKEKFREDLLKIART 160 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888775321 012237899999999
Q ss_pred hhcccc-cCchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccC-CCCcccccCceEEEEE
Q 009026 168 AVASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-VGSIKNMEKAKVAVFA 245 (546)
Q Consensus 168 ~l~sk~-~~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~-~~~~~~i~n~kI~ll~ 245 (546)
+|+||+ +...++|++++++|+.++... -+++.|+|+|..||+++||++-+|+++++.+ .+.|++++|+||++-|
T Consensus 161 TL~SKiLsq~kehFaelavdAV~rLkGs----~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIAN 236 (527)
T KOG0363|consen 161 TLSSKILSQDKEHFAELAVDAVLRLKGS----TNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIAN 236 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCC----CCccceeeehhcCCccccccccccceeccccCCCCcccccccceEEec
Confidence 999995 455799999999999999643 4678999999999999999999999999988 5789999999999999
Q ss_pred eecccccccccc-eEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHH
Q 009026 246 GGVDTSATETKG-TVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELR 324 (546)
Q Consensus 246 ~~l~~~~~~~~~-~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~ 324 (546)
.+++..|-+.++ .+.+++...+..+...|++.+++++++|.++|+|+.+..+-|.++..++|...||+++...+.+-+|
T Consensus 237 T~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiE 316 (527)
T KOG0363|consen 237 TPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIE 316 (527)
T ss_pred CCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHH
Confidence 999999988654 5889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Q 009026 325 RFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (546)
Q Consensus 325 ~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~ 404 (546)
|++.+||+.++++|++++...+|+|+.+++..+|+++++.|.+++ .+..|||+|||++++++||.+|++|||||++...
T Consensus 317 RLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~-~GeActIVlrGat~q~LDEaeRslHDALcVLaqt 395 (527)
T KOG0363|consen 317 RLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVK-LGEACTIVLRGATQQILDEAERSLHDALCVLAQT 395 (527)
T ss_pred HHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccc-cccceEEEEecccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 4889999999999999999999999999999999
Q ss_pred hhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEec
Q 009026 405 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDL 484 (546)
Q Consensus 405 ~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~ 484 (546)
.++.+++.||||.||.+|.++.++|.+.+|++..++++||+||..+|.+|+.|+|+|+.+++++||+.|.+|...+|+|+
T Consensus 396 v~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~ 475 (527)
T KOG0363|consen 396 VKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDV 475 (527)
T ss_pred hccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q 009026 485 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGG 532 (546)
Q Consensus 485 ~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~~ 532 (546)
.+|++.||.+.||+|++.+|.+++.+|.|+|.+|||+|++|.+.|+..
T Consensus 476 ~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r 523 (527)
T KOG0363|consen 476 RNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRER 523 (527)
T ss_pred ccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccc
Confidence 999999999999999999999999999999999999999999988743
No 23
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.6e-99 Score=808.73 Aligned_cols=467 Identities=29% Similarity=0.541 Sum_probs=438.4
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHh
Q 009026 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (546)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~ 92 (546)
+++++....++ ++++..|+.||.+++++++|||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (480)
T cd03337 4 VLNQNTKRESG-RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (480)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhH
Confidence 34666666666 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhccc
Q 009026 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (546)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk 172 (546)
++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++ ++..|.+.|.++++|+++||
T Consensus 83 ~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~----~~~~~~~~l~~i~~t~l~sK 158 (480)
T cd03337 83 DEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIP----VDVNDRAQMLKIIKSCIGTK 158 (480)
T ss_pred HHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccc----cccCCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999998875 35668999999999999999
Q ss_pred cc-CchhhHHHHHHHHHHHhcCCC--C-Cccccc-chhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEE
Q 009026 173 QF-GQEEILCPLIADACIQVCPKN--P-ANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (546)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~v~~~~--~-~~~~~~-~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~ 245 (546)
+. .+.+.|++++++|+..++++. . .++|++ +|+|++++||+++||++++|++|++++. +|+++++||||++++
T Consensus 159 ~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~ 238 (480)
T cd03337 159 FVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLD 238 (480)
T ss_pred cchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEe
Confidence 64 578999999999999997642 1 136665 4899999999999999999999999874 689999999999999
Q ss_pred eecccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHH
Q 009026 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (546)
Q Consensus 246 ~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ 325 (546)
++|++ ||+++++|++.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~r 277 (480)
T cd03337 239 CPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNR 277 (480)
T ss_pred cCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHH
Confidence 99875 9999999999999999999999999999999999
Q ss_pred HHHHhCCeeccccCCCCCCCccc-ceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Q 009026 326 FCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (546)
Q Consensus 326 ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~ 404 (546)
||++|||++++++++++++.+|+ |+.+++.++++++|++|++|+ .++++||+|||+++.+++|+||+++||+++++++
T Consensus 278 Ia~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~-~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~ 356 (480)
T cd03337 278 IARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECK-DPKACTILLRGASKDVLNEVERNLQDAMAVARNI 356 (480)
T ss_pred HHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 678888888999999999997 4889999999999999999999999999999999
Q ss_pred hhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcC-CCceeEe
Q 009026 405 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGID 483 (546)
Q Consensus 405 ~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~-~~~~Gid 483 (546)
++++++|||||++|++++.+|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|++.|.++ +.++|+|
T Consensus 357 ~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 436 (480)
T cd03337 357 ILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGID 436 (480)
T ss_pred hcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECee
Confidence 999999999999999999999999888899999999999999999999999999999999999999999886 6789999
Q ss_pred ccCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhh
Q 009026 484 LENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIM 526 (546)
Q Consensus 484 ~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~ 526 (546)
+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 437 ~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 437 GETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred ccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 9999999999999999999999999999999999999999874
No 24
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.3e-95 Score=779.47 Aligned_cols=456 Identities=38% Similarity=0.614 Sum_probs=435.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCCchhH
Q 009026 24 LDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLT 103 (546)
Q Consensus 24 ~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~ 103 (546)
.++++..|++||..++++++|||||+|++|||+++.|++++||||+||+++|+++||+++++++++++|++++||||||+
T Consensus 6 ~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGTtt~ 85 (464)
T cd00309 6 GEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTV 85 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCchhHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccc-cCchhhHHH
Q 009026 104 ISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCP 182 (546)
Q Consensus 104 vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~ 182 (546)
++|+++||+++.+++++|+||..|++||+.|++.++++|++++++. +..+.+.|.++++|+++||+ +.++++|++
T Consensus 86 viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~----~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 86 VVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPI----DVEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCcc----CCCCHHHHHHHhHhcccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999998862 56789999999999999995 568999999
Q ss_pred HHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEEeecccccccccceEE
Q 009026 183 LIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVL 260 (546)
Q Consensus 183 lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~~~l~~~~~~~~~~v~ 260 (546)
++++|+.+++++.. .++.+.|+|++++||++.||++++|++|++++. .|++.++||||++++++|++
T Consensus 162 l~~~Ai~~v~~~~~-~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~---------- 230 (464)
T cd00309 162 LVVDAVLKVGKENG-DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY---------- 230 (464)
T ss_pred HHHHHHHHhccccC-ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce----------
Confidence 99999999976432 477889999999999999999999999999884 57899999999999999876
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeeccccCC
Q 009026 261 IHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQ 340 (546)
Q Consensus 261 i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ii~~l~~ 340 (546)
||+++++|++.+++||.++||++++++++++|+|||++|||++++++++
T Consensus 231 -------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~ 279 (464)
T cd00309 231 -------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLED 279 (464)
T ss_pred -------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccccc
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHH
Q 009026 341 PNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 420 (546)
Q Consensus 341 l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~ 420 (546)
+++.++|+|+.|++.++|+++|++|.+++ .++.+||+|||+|+.+++|+||+++||+++++++++++++|||||++|++
T Consensus 280 ~~~~~lG~~~~v~~~~~g~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 280 LTPEDLGTAGLVEETKIGDEKYTFIEGCK-GGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred CCcccCccccEEEEEEEcCeeEEEEEecC-CCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 99999999999999999999999999986 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccc
Q 009026 421 LARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDL 500 (546)
Q Consensus 421 la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp 500 (546)
++++|++++.+.++++++++++||+||+.||++|++|||+|+.+++.+|+..|.++..++|+|..+|++.||++.|||||
T Consensus 359 ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp 438 (464)
T cd00309 359 LSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDP 438 (464)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeec
Confidence 99999999988899999999999999999999999999999999999999999877678999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhchhhhhh
Q 009026 501 YVTKFFALKYAADAACTVLRVDQIIM 526 (546)
Q Consensus 501 ~~vk~~~l~~A~e~a~~lL~iD~ii~ 526 (546)
+.+|+++++.|+|+|++|||||++|.
T Consensus 439 ~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 439 LKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 99999999999999999999999874
No 25
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-94 Score=766.68 Aligned_cols=501 Identities=32% Similarity=0.477 Sum_probs=468.2
Q ss_pred cccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCC
Q 009026 20 HMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDG 99 (546)
Q Consensus 20 ~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 99 (546)
...+ ++++..|+.|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++||.|+|+++++++|++++|||
T Consensus 6 ~~~~-~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GDG 84 (524)
T COG0459 6 RKFG-EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDG 84 (524)
T ss_pred cccc-HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcCc
Confidence 3345 599999999999999999999999999999999977999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhh
Q 009026 100 ANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEI 179 (546)
Q Consensus 100 ttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ 179 (546)
|||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++.+.+. +..+.+. +++.|++++|..+.+++
T Consensus 85 TTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v----~~~~~~~--~~~~t~v~sk~~~~~~~ 158 (524)
T COG0459 85 TTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPV----SDSEEEL--KIAITSVASKSANSDEE 158 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccC----Ccchhhh--hhhhheeeeeeccChHH
Confidence 99999999999999999999999999999999999999999999998862 2223333 78889999997665699
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccC---CCCc-ccccCceEEEEEeecccccccc
Q 009026 180 LCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA---VGSI-KNMEKAKVAVFAGGVDTSATET 255 (546)
Q Consensus 180 ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~---~~~~-~~i~n~kI~ll~~~l~~~~~~~ 255 (546)
|++++++|+.+++.... |++.|.+.+..||+.++|++++|++|++.. ..|| +.++||+|++++++|+..+++.
T Consensus 159 i~~lv~~Av~~v~~~~~---d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l 235 (524)
T COG0459 159 IGELVVEAVEKVGKEQS---DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPEL 235 (524)
T ss_pred HHHHHHHHHHHhccccc---ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccC
Confidence 99999999999976542 778999999999999999999999999943 3578 8999999999999999999999
Q ss_pred cceEEecCHHHHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEeCCcccHHHHHHHHHCCeEEEEecCHHHH-HHHHHHhCC
Q 009026 256 KGTVLIHNAEQLENYAKTEE-AKVEGLIKAVAESGAE-VIVSGAAVGEMALHFCERYKLMVLKISSKFEL-RRFCRTTGA 332 (546)
Q Consensus 256 ~~~v~i~~~~~l~~~~~~E~-~~l~~~v~~l~~~~v~-vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l-~~ia~~tGa 332 (546)
+.++.++++.+|+.+.++|+ +.+..+++++.+.++| +++++++|+|++++||.+.+|++++++.++++ ++|++++||
T Consensus 236 ~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga 315 (524)
T COG0459 236 PLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGA 315 (524)
T ss_pred cceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCc
Confidence 99999999999999999999 9999999999999999 99999999999999999999999999999999 899999999
Q ss_pred eeccccCCCCCCCccc--ceeEEEEEECCeEEEEEEecCC-CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCe
Q 009026 333 VAMLKLCQPNPDDLGY--VDSVSVEEIGGARVTIVRNEGG-GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409 (546)
Q Consensus 333 ~ii~~l~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~ 409 (546)
++++.++++++..+|. |..+++.+++++++.+|++++. .++.+||+|||+|+.+++|.||+++|||+++++++++|+
T Consensus 316 ~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~ 395 (524)
T COG0459 316 KIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGK 395 (524)
T ss_pred eEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 9999999999999999999863 378999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCc
Q 009026 410 IVPGAAATEIELARRLKEFSFKETG-LDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 488 (546)
Q Consensus 410 vvpGGG~~E~~la~~L~~~~~~~~~-~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~ 488 (546)
+|||||++|++++.+|++++...++ ++|+++++|++|||.||++|++|||+|+.+++.+|++.|. ..++|+|+.+|+
T Consensus 396 iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~~ 473 (524)
T COG0459 396 IVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTGE 473 (524)
T ss_pred eEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCCc
Confidence 9999999999999999998544555 9999999999999999999999999999999999999875 346999999999
Q ss_pred c-cccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q 009026 489 C-ADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGG 532 (546)
Q Consensus 489 i-~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~~ 532 (546)
+ .||.+.|||||+.||+++|+.|+|+|.+||++|++|..+|...
T Consensus 474 ~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 474 YEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred cccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 9 7799999999999999999999999999999999999998853
No 26
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1e-92 Score=768.17 Aligned_cols=480 Identities=34% Similarity=0.582 Sum_probs=453.8
Q ss_pred HHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCCchhHHHHHHHHHHHHHHH
Q 009026 38 LSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEEL 117 (546)
Q Consensus 38 l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~l 117 (546)
|++++++||||+|++|||++..|++++||||+||+++|+++||+++++++++++|++++||||||+++|+++||+++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccc-cCchhhHHHHHHHHHHHhcCCCC
Q 009026 118 IRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPLIADACIQVCPKNP 196 (546)
Q Consensus 118 i~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~ls~lv~~a~~~v~~~~~ 196 (546)
+++|+||..|++||+.|++.+++.|++++++. +..+ +.+.++++|++++|+ ..+.++|++++++|+..+ +..
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~----~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~-~~~- 153 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPI----NNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSI-KSN- 153 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEES----TSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHH-TTT-
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccc----cccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhh-ccc-
Confidence 99999999999999999999999999998762 2222 899999999999995 467899999999999444 322
Q ss_pred CcccccchhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEEeecccccccccceEEecCHHHHHHHHHHH
Q 009026 197 ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTE 274 (546)
Q Consensus 197 ~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E 274 (546)
+++++++++++.||+++||++++|++|++.+. .|+++++||||++++++|++.++ .+.++.+++++++..+.++|
T Consensus 154 --~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e 230 (485)
T PF00118_consen 154 --FDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQE 230 (485)
T ss_dssp --HHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHH
T ss_pred --ccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhh
Confidence 78888999999999999999999999998874 47899999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeeccccCCCCCCCcccceeEEE
Q 009026 275 EAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSV 354 (546)
Q Consensus 275 ~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~ 354 (546)
+++++++++++.+.|++||+++++|++.+++||.++||++++++++++|++|+++|||++++++++++++.+|+|+++++
T Consensus 231 ~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~ 310 (485)
T PF00118_consen 231 KKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEE 310 (485)
T ss_dssp HHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEE
T ss_pred hhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred EEECCeEEEEEE--ecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccc
Q 009026 355 EEIGGARVTIVR--NEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKE 432 (546)
Q Consensus 355 ~~ig~~~~~~~~--~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~ 432 (546)
..+++++|++|. ++. .++.+||+|||+++.+++|++|+++||+++++++++++++|||||++|++|+++|++++.+.
T Consensus 311 ~~i~~~~~~~~~~~~~~-~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~ 389 (485)
T PF00118_consen 311 REIGNKKYIFIEGIGCL-SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSL 389 (485)
T ss_dssp EEETSSEEEEEEEHSES-SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCS
T ss_pred ccccccccccccccccc-ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcc
Confidence 999999999999 465 48899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHH
Q 009026 433 TGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAA 512 (546)
Q Consensus 433 ~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~ 512 (546)
++.+++++++||+||+.||++|++|||+|+.+++++|+..|+++ .++|+|+.+|++.||.+.|||||+.+|+++|+.|+
T Consensus 390 ~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~-~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~ 468 (485)
T PF00118_consen 390 SGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNG-NNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAV 468 (485)
T ss_dssp SSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHST-TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHH
T ss_pred cCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccc-cccCcCccCCceeccccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998765 49999999999999999999999999999999999
Q ss_pred HHHHHHhchhhhhhcCC
Q 009026 513 DAACTVLRVDQIIMAKP 529 (546)
Q Consensus 513 e~a~~lL~iD~ii~~~~ 529 (546)
|+|++|||||++|.++|
T Consensus 469 ~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 469 EIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999876
No 27
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.3e-90 Score=742.79 Aligned_cols=460 Identities=23% Similarity=0.325 Sum_probs=419.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccCh----HHHHHHHHHHHhhhhhCCCc
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (546)
++++..|+.+|++++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|++++++|++|++++||||
T Consensus 9 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGT 88 (542)
T PRK12849 9 EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGT 88 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCccCCCc
Confidence 58999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhH
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (546)
||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++.+ ..+.+.|.++++|+.+ ++++|
T Consensus 89 TtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~------~~~~~~l~~va~ts~~-----~~~~l 157 (542)
T PRK12849 89 TTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARP------VSGSEEIAQVATISAN-----GDEEI 157 (542)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcC-----ChHHH
Confidence 999999999999999999999999999999999999999999999875 3467889999888754 57899
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhhhcCCCCccc-ceeEeeEEEeccCC---------CCcccccCceEEEEEeeccc
Q 009026 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHN-STIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (546)
Q Consensus 181 s~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~d-S~li~Giv~~~~~~---------~~~~~i~n~kI~ll~~~l~~ 250 (546)
++++++|+..+++++. |+++ .|++.+| |++++|++|++++. .|++.++||+|+++++.
T Consensus 158 ~~lv~~Av~~v~~~g~--i~i~-------~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~--- 225 (542)
T PRK12849 158 GELIAEAMEKVGKDGV--ITVE-------ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKK--- 225 (542)
T ss_pred HHHHHHHHHHhccCCc--EeEE-------eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCC---
Confidence 9999999999976542 5542 6888876 89999999998863 35788999999999995
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHC------CeEEEEecC-----
Q 009026 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISS----- 319 (546)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~------~I~vv~~v~----- 319 (546)
+++++++. ++++++.+.+++|||++++|++.++++|.++ +|+++++++
T Consensus 226 ----------i~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r 284 (542)
T PRK12849 226 ----------ISSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRR 284 (542)
T ss_pred ----------cCCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchh
Confidence 45555555 5789999999999999999999999999988 999999998
Q ss_pred HHHHHHHHHHhCCeecc-----ccCCCCCCCcccceeEEEEEECCeEEEEEEecCCC-----------------------
Q 009026 320 KFELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (546)
Q Consensus 320 ~~~l~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (546)
+++++|||.+|||++++ ++++++++++|+|+.|++.+ ++++++.++.+.
T Consensus 285 ~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~ 361 (542)
T PRK12849 285 KAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDR 361 (542)
T ss_pred HhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45599999999999999 68888888999999998754 888888887531
Q ss_pred -----------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHH
Q 009026 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (546)
Q Consensus 372 -----------~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~ 440 (546)
++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++ +.++++++++
T Consensus 362 ~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i 439 (542)
T PRK12849 362 EKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGV 439 (542)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHH
Confidence 3589999999999999999999999999999999998 99999999999999999998 8889999999
Q ss_pred HHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009026 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (546)
Q Consensus 441 ~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~ 520 (546)
++||+||+.||++|++|||+|+.+++++|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||+
T Consensus 440 ~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~ 515 (542)
T PRK12849 440 EIVRRALEAPLRQIAENAGLDGSVVVAKVLELE----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLT 515 (542)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998874 4799999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCCCCCC
Q 009026 521 VDQIIMAKPAGGPRRDQQ 538 (546)
Q Consensus 521 iD~ii~~~~~~~~~~~~~ 538 (546)
||++|..+|.. ..+|++
T Consensus 516 id~iI~~~~~~-~~~~~~ 532 (542)
T PRK12849 516 TEALVADKPEE-EDPPGG 532 (542)
T ss_pred HHHHHhcCCcc-CCCCCC
Confidence 99999998853 333554
No 28
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.1e-89 Score=740.81 Aligned_cols=468 Identities=22% Similarity=0.323 Sum_probs=426.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccCh----HHHHHHHHHHHhhhhhCCCc
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (546)
++++..|+.+++.++++++|||||+||+|||+++.|+++|||||+|||++|+++|| .|+|++++|++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGT 89 (541)
T PRK12851 10 VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGT 89 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhhCCCc
Confidence 58999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhH
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (546)
||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++.+ +.+.+.+.++++++. +++++|
T Consensus 90 TtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~------~~~~~~l~~va~~s~-----~~~~~l 158 (541)
T PRK12851 90 TTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARP------VTTNAEIAQVATISA-----NGDAEI 158 (541)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhc-----cChHHH
Confidence 999999999999999999999999999999999999999999999875 236778899987654 358899
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC---------CCcccccCceEEEEEeecccc
Q 009026 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (546)
Q Consensus 181 s~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~---------~~~~~i~n~kI~ll~~~l~~~ 251 (546)
++++++|+..+++++. ++ +.+.. +...++++++|++|++++. .|++.++||+|+++|+++
T Consensus 159 ~~lv~~Av~~vg~~g~--i~-----i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i--- 227 (541)
T PRK12851 159 GRLVAEAMEKVGNEGV--IT-----VEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKI--- 227 (541)
T ss_pred HHHHHHHHHHhcccCc--eE-----EEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCc---
Confidence 9999999999976442 33 33333 5667899999999998762 378899999999999984
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCe------EEEEe-----cCH
Q 009026 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKI-----SSK 320 (546)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I------~vv~~-----v~~ 320 (546)
++.++ +.++++.+.+.+++|||++++|++.++++|.+++| ++|++ +++
T Consensus 228 ----------~~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~ 286 (541)
T PRK12851 228 ----------SNLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 286 (541)
T ss_pred ----------CcHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccH
Confidence 23222 55789999999999999999999999999999886 89997 788
Q ss_pred HHHHHHHHHhCCeecc-----ccCCCCCCCcccceeEEEEEECCeEEEEEEecCCC------------------------
Q 009026 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG------------------------ 371 (546)
Q Consensus 321 ~~l~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------------------------ 371 (546)
++|+|||.+|||++++ ++++++++++|+|+.|++.+ ++|+++.++...
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 363 (541)
T PRK12851 287 AMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDRE 363 (541)
T ss_pred hHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999 68888888999999998877 788888887521
Q ss_pred ----------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHH
Q 009026 372 ----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIA 441 (546)
Q Consensus 372 ----------~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~ 441 (546)
+..+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|++++.. +++++++++
T Consensus 364 ~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~ 441 (541)
T PRK12851 364 KLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGVE 441 (541)
T ss_pred HHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHHH
Confidence 1388999999999999999999999999999999998 9999999999999999999876 889999999
Q ss_pred HHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhch
Q 009026 442 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRV 521 (546)
Q Consensus 442 ~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~i 521 (546)
+||+||+.||++|++|||+|+.+++++|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||+|
T Consensus 442 ~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~i 517 (541)
T PRK12851 442 IVRRALEAPVRQIAENAGAEGSVVVGKLREKP----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTT 517 (541)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999998875 47999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCC
Q 009026 522 DQIIMAKPAGGPRRDQQPGGGMD 544 (546)
Q Consensus 522 D~ii~~~~~~~~~~~~~~~~~~~ 544 (546)
|++|..+|...|++|.-|+++||
T Consensus 518 d~iI~~~~~~~~~~~~~~~~~~~ 540 (541)
T PRK12851 518 EAMVAEKPKKEPAPPAPPGGGMD 540 (541)
T ss_pred HHhhhcCCCCCCCCCCCCCcccC
Confidence 99999999988988888888887
No 29
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-89 Score=739.76 Aligned_cols=467 Identities=23% Similarity=0.332 Sum_probs=424.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccCh----HHHHHHHHHHHhhhhhCCCc
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (546)
++++..|+.||+.++++++|||||+|++|||+++.|+++|||||+|||++|+++|| .++|+++++++|++++||||
T Consensus 9 ~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~GDGT 88 (542)
T PRK00013 9 EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGT 88 (542)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcccCCcc
Confidence 58999999999999999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhH
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (546)
||+++|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++ +.+.+.|.++++|+.+ +++.+
T Consensus 89 TtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~------~~~~~~l~~va~ts~~-----~~~~l 157 (542)
T PRK00013 89 TTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKP------VEDKEEIAQVATISAN-----GDEEI 157 (542)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHhccc-----chHHH
Confidence 999999999999999999999999999999999999999999999875 2367889999877653 58899
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC---------CCcccccCceEEEEEeecccc
Q 009026 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (546)
Q Consensus 181 s~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~---------~~~~~i~n~kI~ll~~~l~~~ 251 (546)
++++++|+..+++++ .|+|.+..| ...+|++++|++|++++. .+++.++||+|+++++.
T Consensus 158 s~lv~~Av~~v~~~g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~---- 225 (542)
T PRK00013 158 GKLIAEAMEKVGKEG-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKK---- 225 (542)
T ss_pred HHHHHHHHHHhCcCC-------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCc----
Confidence 999999999997543 255555565 778999999999998863 34788999999999996
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCC------eEEEEecC-----H
Q 009026 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK------LMVLKISS-----K 320 (546)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~------I~vv~~v~-----~ 320 (546)
+++++++. ++++++.+.|++|||++++|++.++++|.+++ |+++++++ +
T Consensus 226 ---------i~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~ 285 (542)
T PRK00013 226 ---------ISNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRK 285 (542)
T ss_pred ---------cCCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchh
Confidence 46666655 67999999999999999999999999999886 99999997 7
Q ss_pred HHHHHHHHHhCCeecc-----ccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCc----------------------
Q 009026 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNS---------------------- 373 (546)
Q Consensus 321 ~~l~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~---------------------- 373 (546)
++|+|||.+|||++++ ++++++++++|+|+.|++.+ ++|++|.++.. ++
T Consensus 286 ~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~-~~~i~~ri~~l~~~~~~~~~~~~~ 361 (542)
T PRK00013 286 AMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGD-KEAIKARVAQIKAQIEETTSDYDR 361 (542)
T ss_pred hhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCC-HHHHHHHHHHHHHHHhhcCCHHHH
Confidence 8999999999999999 78999999999999998764 78899988753 33
Q ss_pred -------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHH
Q 009026 374 -------------VSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (546)
Q Consensus 374 -------------~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~ 440 (546)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+++ ...++++++++
T Consensus 362 ~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i 439 (542)
T PRK00013 362 EKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGI 439 (542)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHH
Confidence 78999999999999999999999999999999998 9999999999999999988 67888999999
Q ss_pred HHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009026 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (546)
Q Consensus 441 ~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~ 520 (546)
++||+||+.||++|++|||+|+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.||.++|+.|+++|++||+
T Consensus 440 ~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~ 516 (542)
T PRK00013 440 NIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK---GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLT 516 (542)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 46899999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCC
Q 009026 521 VDQIIMAKPAGGPRRDQQPGGGM 543 (546)
Q Consensus 521 iD~ii~~~~~~~~~~~~~~~~~~ 543 (546)
||++|..+|...++.|.-.+++|
T Consensus 517 id~iI~~~~~~~~~~~~~~~~~~ 539 (542)
T PRK00013 517 TEAVVADKPEKKAAAPPMGGGGM 539 (542)
T ss_pred HHHHHhcCCcccCCCCCCCCCCC
Confidence 99999999876554443324444
No 30
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.8e-89 Score=736.38 Aligned_cols=468 Identities=20% Similarity=0.326 Sum_probs=425.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChH----HHHHHHHHHHhhhhhCCCc
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGt 100 (546)
++++..|+.||++++++++|||||+||+|||+++.|+++|||||+|||++|+++||+ ++|++++|++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~GDGT 89 (544)
T PRK12850 10 TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGT 89 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchhcCCc
Confidence 589999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhH
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (546)
||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++.+ +.+.+.|.+++++++++ ++.|
T Consensus 90 Tt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~------v~~~~~l~~va~~s~~~-----~~~l 158 (544)
T PRK12850 90 TTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKK------VTSSKEIAQVATISANG-----DESI 158 (544)
T ss_pred chHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcCC-----HHHH
Confidence 999999999999999999999999999999999999999999999875 34778899998877554 7899
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCCC---------CcccccCceEEEEEeecccc
Q 009026 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVG---------SIKNMEKAKVAVFAGGVDTS 251 (546)
Q Consensus 181 s~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~~---------~~~~i~n~kI~ll~~~l~~~ 251 (546)
++++++|+..+++++. ++++.++ ..| .++++++|++|++++.+ +++.++||+|+++|+.+
T Consensus 159 ~~lv~eAv~~vg~~g~--i~v~~~~---~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i--- 227 (544)
T PRK12850 159 GEMIAEAMDKVGKEGV--ITVEEAK---TLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI--- 227 (544)
T ss_pred HHHHHHHHHHhcccCc--eeeEEcc---ccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc---
Confidence 9999999999976543 6665432 233 68999999999988632 47889999999999963
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCe------EEEEe-----cCH
Q 009026 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKI-----SSK 320 (546)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I------~vv~~-----v~~ 320 (546)
++.++ +.++++++.+.|++|||++++|++.++++|.+++| +++++ .++
T Consensus 228 ----------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~ 286 (544)
T PRK12850 228 ----------SNLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRK 286 (544)
T ss_pred ----------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccH
Confidence 33322 56889999999999999999999999999999998 99998 678
Q ss_pred HHHHHHHHHhCCeecc-----ccCCCCCCCcccceeEEEEEECCeEEEEEEecCC-------------------------
Q 009026 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------- 370 (546)
Q Consensus 321 ~~l~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 370 (546)
++|+|||++|||++++ ++++++++++|+|+.|++.+ +++++|.++..
T Consensus 287 ~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 363 (544)
T PRK12850 287 AMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDRE 363 (544)
T ss_pred HHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999999 68888888999999998776 78889988752
Q ss_pred ---------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHH
Q 009026 371 ---------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIA 441 (546)
Q Consensus 371 ---------~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~ 441 (546)
+++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++ ...+++++++++
T Consensus 364 ~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~ 441 (544)
T PRK12850 364 KLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAGID 441 (544)
T ss_pred HHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHHHH
Confidence 13489999999999999999999999999999999997 9999999999999999988 667889999999
Q ss_pred HHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhch
Q 009026 442 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRV 521 (546)
Q Consensus 442 ~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~i 521 (546)
+||+||+.||++|++|||+|+.+++.+|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+|
T Consensus 442 ~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (544)
T PRK12850 442 IVRRALEEPLRQIATNAGFEGSVVVGKVAELP----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITT 517 (544)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999998875 47899999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCC
Q 009026 522 DQIIMAKPAGGPRRDQQPGGGMD 544 (546)
Q Consensus 522 D~ii~~~~~~~~~~~~~~~~~~~ 544 (546)
|++|..+|..+|++..-|+|+|.
T Consensus 518 d~iI~~~~~~~~~~~~~~~~~~~ 540 (544)
T PRK12850 518 EAMVAEAPKKAAAAAAGPGPGMG 540 (544)
T ss_pred HHhhccCCCCCCCCCCCCCCCCC
Confidence 99999999888887776777763
No 31
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-91 Score=694.00 Aligned_cols=506 Identities=29% Similarity=0.476 Sum_probs=472.9
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCCch
Q 009026 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGAN 101 (546)
Q Consensus 22 ~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 101 (546)
+| +.++..|..|+.+++++++|||||-|++||++++.|++++||||+|||+.|.++||++|+|++.++.|++++|||||
T Consensus 16 sg-~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDgtt 94 (545)
T KOG0360|consen 16 SG-ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDGTT 94 (545)
T ss_pred cc-hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCCce
Confidence 56 47888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccc-cCchhhH
Q 009026 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEIL 180 (546)
Q Consensus 102 t~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~l 180 (546)
+|++++++||+++.+|...++||..|++||+.|+..+++++++--.. ++|...++.|.++++|+++||. ....++|
T Consensus 95 svviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~---~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f 171 (545)
T KOG0360|consen 95 SVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSK---PVDSLGTQILINLAKTSMSSKIIGMDSDFF 171 (545)
T ss_pred EEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhcccee---ehhhcchHHHHHHHHhhhcceecccchHHH
Confidence 99999999999999999999999999999999999999999763222 2366789999999999999995 4567999
Q ss_pred HHHHHHHHHHhcC---CCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEEeecccccccc
Q 009026 181 CPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATET 255 (546)
Q Consensus 181 s~lv~~a~~~v~~---~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~~~l~~~~~~~ 255 (546)
++++++|++.+.- ++...+.++.++|.|..|.+..+|.++.|+.++.... .||+++.|+||+++++.|...+.++
T Consensus 172 ~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~l 251 (545)
T KOG0360|consen 172 TEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKL 251 (545)
T ss_pred HHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEecccccccccc
Confidence 9999999998742 2334577889999999999999999999999998873 5899999999999999999888888
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeec
Q 009026 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (546)
Q Consensus 256 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ii 335 (546)
...+.+.+++.++++++.|....++.+++|...|+|||+++++|||+.+.||.++|+++|||+.++||++|+++||++++
T Consensus 252 Gv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~ 331 (545)
T KOG0360|consen 252 GVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLL 331 (545)
T ss_pred cceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeee
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC------CCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCe
Q 009026 336 LKLCQP------NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409 (546)
Q Consensus 336 ~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~ 409 (546)
+++.++ .++.+|+|+.|.+.+|+++.++++.+.+ ...++|+|||++...+||++|++|||+|+++..+++++
T Consensus 332 sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~k--a~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~ 409 (545)
T KOG0360|consen 332 SSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTK--ATSASIILRGANDFMLDEMERSLHDALCVLKRTLESKS 409 (545)
T ss_pred ehhhccccccccChhhccchhHHHHHhcccceeEEeccCc--cceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCc
Confidence 999865 4667999999999999999999999986 34899999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhc--CC------Ccee
Q 009026 410 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS--GK------TKVG 481 (546)
Q Consensus 410 vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~--~~------~~~G 481 (546)
+||||||+|.+|+-+|++++.+..++++.++..||.||..||++|+.|++.|+.++++++++.|+. .+ .++|
T Consensus 410 vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~G 489 (545)
T KOG0360|consen 410 VVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYG 489 (545)
T ss_pred cccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999853 22 4899
Q ss_pred EeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q 009026 482 IDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGP 533 (546)
Q Consensus 482 id~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~~~ 533 (546)
+|+.+|++.|.++.|+++|..+|...|+.|+|.+..+||||++|.-.|+.+.
T Consensus 490 ldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~ 541 (545)
T KOG0360|consen 490 LDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQV 541 (545)
T ss_pred ccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCccccc
Confidence 9999999999999999999999999999999999999999999998887554
No 32
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-90 Score=682.95 Aligned_cols=515 Identities=27% Similarity=0.490 Sum_probs=489.1
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHH
Q 009026 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (546)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~ 90 (546)
...+..+....+|. .+...|++|+++++++++||+||+.|.||+.++.|.+..||||..||+++++.||+|+-+++++.
T Consensus 5 v~~~~~~~~re~g~-kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~r 83 (527)
T KOG0364|consen 5 VLVLSKNTKRESGR-KVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSR 83 (527)
T ss_pred eeecccccCcCccc-cccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhh
Confidence 44456677777785 88899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhc
Q 009026 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (546)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (546)
+||+++|||||||++|++++|.++..++++++||..|+++|.+|++.++..+++.+.+ +|.+|...+..++++++.
T Consensus 84 tqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~----~d~~~~~km~~vi~~~v~ 159 (527)
T KOG0364|consen 84 TQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIP----VDVKDQAKMLRVINSSVG 159 (527)
T ss_pred cccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhccc----CCcccHHHHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999988876 588999999999999999
Q ss_pred cccc-CchhhHHHHHHHHHHHhcCCCCCccccc-chhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEEe
Q 009026 171 SKQF-GQEEILCPLIADACIQVCPKNPANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAG 246 (546)
Q Consensus 171 sk~~-~~~~~ls~lv~~a~~~v~~~~~~~~~~~-~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~~ 246 (546)
+|+. .|++.++++..+|+..++.++...||+. +.++.|++||.+.+|++++|+.+.++.. .|.+.++||||++++|
T Consensus 160 tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~ 239 (527)
T KOG0364|consen 160 TKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDC 239 (527)
T ss_pred hhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecC
Confidence 9974 5789999999999999987543357774 7889999999999999999999999884 4788999999999999
Q ss_pred ecccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHH
Q 009026 247 GVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRF 326 (546)
Q Consensus 247 ~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~i 326 (546)
||+|.+.+.++.+.+...+++...++-|++++..+++.|....++||++++++++.+++||.+.||.+++++.+.|-.|+
T Consensus 240 ~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ri 319 (527)
T KOG0364|consen 240 PLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRI 319 (527)
T ss_pred CccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccccCCCCCCCcc-cceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHh
Q 009026 327 CRTTGAVAMLKLCQPNPDDLG-YVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (546)
Q Consensus 327 a~~tGa~ii~~l~~l~~~~lG-~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~ 405 (546)
++++||+++++.+++.+.+.| .|+.|++.++|+++|.||..|+ .++.|||++|||++.+++|.+|.++||+.+.|+.+
T Consensus 320 a~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck-~pkaCtillrg~skdil~e~ernlqda~~varn~i 398 (527)
T KOG0364|consen 320 ARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCK-EPKACTILLRGPSKDILNEVERNLQDAMGVARNVI 398 (527)
T ss_pred hhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcC-CCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhc
Confidence 999999999999999999999 5889999999999999999998 59999999999999999999999999999999999
Q ss_pred hCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEecc
Q 009026 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 485 (546)
Q Consensus 406 ~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~ 485 (546)
-+|+++||||++||.+|+.|++.+....+.+++.+.+.|.|||.|||+|++|+|.+++..++.+++.|..|...+|+|..
T Consensus 399 i~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~ 478 (527)
T KOG0364|consen 399 INPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGE 478 (527)
T ss_pred cCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCc
Confidence 99999999999999999999998888899999999999999999999999999999999999999999988888999999
Q ss_pred CCcccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q 009026 486 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAG 531 (546)
Q Consensus 486 ~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~ 531 (546)
+|.++||.+.++|||..+|.+..++|+|++++|||||+++......
T Consensus 479 tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 479 TGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred eeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 9999999999999999999999999999999999999999886654
No 33
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9e-88 Score=725.65 Aligned_cols=451 Identities=23% Similarity=0.338 Sum_probs=414.5
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccCh----HHHHHHHHHHHhhhhhC
Q 009026 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIG 97 (546)
Q Consensus 22 ~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~G 97 (546)
.| .+++..|+.+|+.++++++|||||+|++|||+++.|+++|||||+||+++|+++|| .++|+++++++|++++|
T Consensus 5 ~g-~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~G 83 (520)
T cd03344 5 FG-EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAG 83 (520)
T ss_pred ch-HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccC
Confidence 35 48999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCch
Q 009026 98 DGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQE 177 (546)
Q Consensus 98 DGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 177 (546)
|||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++ ++|.+.|.++++|++++ +
T Consensus 84 DGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~------i~~~~~l~~va~ts~~~-----~ 152 (520)
T cd03344 84 DGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKP------VKTKEEIAQVATISANG-----D 152 (520)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcCC-----h
Confidence 999999999999999999999999999999999999999999999999875 34788999999988774 7
Q ss_pred hhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCccc-ceeEeeEEEeccCC--C-------CcccccCceEEEEEee
Q 009026 178 EILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHN-STIVRGMVLKSDAV--G-------SIKNMEKAKVAVFAGG 247 (546)
Q Consensus 178 ~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~d-S~li~Giv~~~~~~--~-------~~~~i~n~kI~ll~~~ 247 (546)
+++++++++|+..+++++. |.+ ..||+.+| +++++|++|++++. . |++.++||+|++++++
T Consensus 153 ~~l~~lv~~A~~~v~~~~~--i~v-------~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~ 223 (520)
T cd03344 153 EEIGELIAEAMEKVGKDGV--ITV-------EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKK 223 (520)
T ss_pred HHHHHHHHHHHHHhccCCc--EEE-------EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCC
Confidence 8999999999999876432 322 37899988 79999999998863 2 3467899999999998
Q ss_pred cccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCe------EEEEec---
Q 009026 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKIS--- 318 (546)
Q Consensus 248 l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I------~vv~~v--- 318 (546)
+ ++++++. ++++++.+.|++|||++++|++.++++|.+++| ++++++
T Consensus 224 l-------------~~~~~l~-----------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~ 279 (520)
T cd03344 224 I-------------SSIQELL-----------PILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFG 279 (520)
T ss_pred C-------------CCHHHHH-----------HHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCC
Confidence 4 5555554 578999999999999999999999999999988 999987
Q ss_pred --CHHHHHHHHHHhCCeecc-----ccCCCCCCCcccceeEEEEEECCeEEEEEEecCCC--------------------
Q 009026 319 --SKFELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG-------------------- 371 (546)
Q Consensus 319 --~~~~l~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~-------------------- 371 (546)
++++++|||++|||++++ ++++++++++|+|+.|++.+ ++++++.++...
T Consensus 280 ~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~ 356 (520)
T cd03344 280 DRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSD 356 (520)
T ss_pred cccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCH
Confidence 789999999999999999 78888888999999999877 778888877531
Q ss_pred --------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHH
Q 009026 372 --------------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQ 437 (546)
Q Consensus 372 --------------~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~ 437 (546)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++. .+++++
T Consensus 357 ~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~ 434 (520)
T cd03344 357 YDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEK 434 (520)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHH
Confidence 2599999999999999999999999999999999998 999999999999999999987 889999
Q ss_pred HHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHH
Q 009026 438 YAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACT 517 (546)
Q Consensus 438 ~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~ 517 (546)
+++++||+||+.||++|++|||+|+.+++++|++.|. ++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++
T Consensus 435 ~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~ 510 (520)
T cd03344 435 LGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASL 510 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998763 899999999999999999999999999999999999999
Q ss_pred Hhchhhhhh
Q 009026 518 VLRVDQIIM 526 (546)
Q Consensus 518 lL~iD~ii~ 526 (546)
||+||.+|.
T Consensus 511 iL~id~~i~ 519 (520)
T cd03344 511 LLTTEALVV 519 (520)
T ss_pred HHhhheEEe
Confidence 999999875
No 34
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=2.1e-87 Score=727.98 Aligned_cols=456 Identities=20% Similarity=0.299 Sum_probs=415.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccCh----HHHHHHHHHHHhhhhhCCCc
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (546)
++++..|+.+|..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .++|+++++++|++++||||
T Consensus 21 ~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~evGDGT 100 (555)
T PTZ00114 21 DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGT 100 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccccCCcc
Confidence 58999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhH
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (546)
||+++||++||+++.+|+++|+||..|++||+.|.+.++++|++++.+ +.+.+.|.++++|+.++ +++|
T Consensus 101 TtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~------v~~~~~l~~va~ts~~~-----~~~l 169 (555)
T PTZ00114 101 TTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRP------VKTKEDILNVATISANG-----DVEI 169 (555)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHHcCC-----hHHH
Confidence 999999999999999999999999999999999999999999999875 23678899999887654 6789
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccc-eeEeeEEEeccCC---------CCcccccCceEEEEEeeccc
Q 009026 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (546)
Q Consensus 181 s~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS-~li~Giv~~~~~~---------~~~~~i~n~kI~ll~~~l~~ 250 (546)
++++++|+.++++++. |.+..||+++|| ++++|++|++++. .|++.++||+|++++++|+
T Consensus 170 ~~li~eAv~~vg~~g~---------I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~- 239 (555)
T PTZ00114 170 GSLIADAMDKVGKDGT---------ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS- 239 (555)
T ss_pred HHHHHHHHHHhCcCCc---------EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC-
Confidence 9999999999975431 455689999998 8999999998862 2578899999999999975
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCC------eEEEEec-----C
Q 009026 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK------LMVLKIS-----S 319 (546)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~------I~vv~~v-----~ 319 (546)
++++ +.++++++.+.|++|+|++++|++.++++|..++ |++++++ +
T Consensus 240 ------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~ 296 (555)
T PTZ00114 240 ------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNR 296 (555)
T ss_pred ------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcch
Confidence 3333 4478889999999999999999999999998875 9999884 5
Q ss_pred HHHHHHHHHHhCCeecccc------CCCCCCCcccceeEEEEEECCeEEEEEEecCC-----------------------
Q 009026 320 KFELRRFCRTTGAVAMLKL------CQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG----------------------- 370 (546)
Q Consensus 320 ~~~l~~ia~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~----------------------- 370 (546)
+++|+|||.+|||+++++. ++++++++|+|++|++.+ .+++++.++..
T Consensus 297 ~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~ 373 (555)
T PTZ00114 297 KDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSEYD 373 (555)
T ss_pred HHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHH
Confidence 6899999999999999997 777788899999999988 45556655430
Q ss_pred -----------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhc--cccchHH
Q 009026 371 -----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF--KETGLDQ 437 (546)
Q Consensus 371 -----------~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~--~~~~~~~ 437 (546)
+++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|..|++++. ..+++++
T Consensus 374 ~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~ 452 (555)
T PTZ00114 374 KEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQR 452 (555)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHH
Confidence 36799999999999999999999999999999999988 999999999999999999875 5778999
Q ss_pred HHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHH
Q 009026 438 YAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACT 517 (546)
Q Consensus 438 ~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~ 517 (546)
+++++||+||+.||++|++|||+|+.+++++|++ +++.++|+|+.+|++.||++.|||||+.||.++|+.|+++|++
T Consensus 453 ~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~ 529 (555)
T PTZ00114 453 TGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASL 529 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999976 3467899999999999999999999999999999999999999
Q ss_pred HhchhhhhhcCCCC
Q 009026 518 VLRVDQIIMAKPAG 531 (546)
Q Consensus 518 lL~iD~ii~~~~~~ 531 (546)
||+||++|..+|..
T Consensus 530 iL~id~iI~~~~~~ 543 (555)
T PTZ00114 530 MLTTEAAIVDLPKE 543 (555)
T ss_pred HHhHHHHHHhCCcc
Confidence 99999999998764
No 35
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.4e-87 Score=726.99 Aligned_cols=457 Identities=19% Similarity=0.289 Sum_probs=415.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccc----cChHHHHHHHHHHHhhhhhCCCc
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEV----QHPAAKLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~----~hP~a~ll~~~~~~~~~~~GDGt 100 (546)
+++++.|++++..++++++|||||+||+|||+++.|+++|||||+|||++|++ +||.|+|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~GDGT 89 (545)
T PRK12852 10 GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGT 89 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCceecCCc
Confidence 58999999999999999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhH
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (546)
||+++||++||+++.+|+++|+||..|++||+.|.+.+++.|++++++ +.+.+.+.++++++.++ ++.|
T Consensus 90 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~------v~~~~~l~~va~~s~~~-----~~~l 158 (545)
T PRK12852 90 TTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKP------VASSAEIAQVGTISANG-----DAAI 158 (545)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccc------CCCHHHHHHHHhhhcCC-----hHHH
Confidence 999999999999999999999999999999999999999999999875 23456789998776543 6889
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhhhcCCCCc-ccceeEeeEEEeccCC---------CCcccccCceEEEEEeeccc
Q 009026 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (546)
Q Consensus 181 s~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~-~dS~li~Giv~~~~~~---------~~~~~i~n~kI~ll~~~l~~ 250 (546)
++++++|+.++++++. |+++ .|+.. .+|++++|+.|++++. .|+..++||+|+++++.
T Consensus 159 ~~li~eA~~~vg~~g~--i~v~-------~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~--- 226 (545)
T PRK12852 159 GKMIAQAMQKVGNEGV--ITVE-------ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKK--- 226 (545)
T ss_pred HHHHHHHHHHhccCCc--eeee-------cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCc---
Confidence 9999999999987553 6665 27775 7999999999998873 36788999999999875
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHC------CeEEEEecC-----
Q 009026 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISS----- 319 (546)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~------~I~vv~~v~----- 319 (546)
+++++ .+.++++.+.+.+++|||++++|++.++++|..+ +|+++++++
T Consensus 227 ----------i~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r 285 (545)
T PRK12852 227 ----------LSGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRR 285 (545)
T ss_pred ----------cCCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccch
Confidence 34443 4457899999999999999999999999999875 799999887
Q ss_pred HHHHHHHHHHhCCeecc-----ccCCCCCCCcccceeEEEEEECCeEEEEEEecCCC-----------------------
Q 009026 320 KFELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (546)
Q Consensus 320 ~~~l~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (546)
+++|+|||.+|||++++ ++++++++++|+|+.|++.+ ++++++.++...
T Consensus 286 ~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (545)
T PRK12852 286 KAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDR 362 (545)
T ss_pred HhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 88999999999999999 68888888999999998877 678888876421
Q ss_pred -----------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHH
Q 009026 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (546)
Q Consensus 372 -----------~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~ 440 (546)
++.+||+|||+|+.+++|+||+++||++++++++++| +|||||++|++++.+|++++.. ++.+|+++
T Consensus 363 ~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i 440 (545)
T PRK12852 363 EKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGI 440 (545)
T ss_pred HHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHH
Confidence 3789999999999999999999999999999999998 9999999999999999999876 78899999
Q ss_pred HHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009026 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (546)
Q Consensus 441 ~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~ 520 (546)
++||+||+.||++|++|||+|+.+++++|++.| ++++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||+
T Consensus 441 ~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~ 517 (545)
T PRK12852 441 NIVLKALEAPIRQIAENAGVEGSIVVGKILENK---SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVT 517 (545)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998877 46899999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCC
Q 009026 521 VDQIIMAKPAGGP 533 (546)
Q Consensus 521 iD~ii~~~~~~~~ 533 (546)
||++|..+|....
T Consensus 518 id~iI~~~~~~~~ 530 (545)
T PRK12852 518 TEAMVAELPKKDA 530 (545)
T ss_pred HHHHhhcCCCCCC
Confidence 9999998876533
No 36
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=5.1e-87 Score=721.22 Aligned_cols=452 Identities=23% Similarity=0.326 Sum_probs=410.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccCh----HHHHHHHHHHHhhhhhCCCc
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (546)
++++..|++|+.+++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .++|+++++++|++++||||
T Consensus 8 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGT 87 (524)
T TIGR02348 8 EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGT 87 (524)
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCceeCCCc
Confidence 59999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhH
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (546)
||+++|+++||+++.+|+++|+||..|++||+.|.+.++++|++++.+ ..+.+.|.++++|+.+ +++++
T Consensus 88 TtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~------~~~~~~l~~va~ts~~-----~~~~l 156 (524)
T TIGR02348 88 TTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKP------VKGKKEIAQVATISAN-----NDEEI 156 (524)
T ss_pred chHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcc-----ChHHH
Confidence 999999999999999999999999999999999999999999999885 2367889999887654 47899
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhhhcCCCCc-ccceeEeeEEEeccCC--C-------CcccccCceEEEEEeeccc
Q 009026 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV--G-------SIKNMEKAKVAVFAGGVDT 250 (546)
Q Consensus 181 s~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~-~dS~li~Giv~~~~~~--~-------~~~~i~n~kI~ll~~~l~~ 250 (546)
++++++|+..+++++. |++. .|+.. ++|++++|++|++++. . +++.++||+|+++++.
T Consensus 157 ~~lv~~A~~~v~~~~~--i~v~-------~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~--- 224 (524)
T TIGR02348 157 GSLIAEAMEKVGKDGV--ITVE-------ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKK--- 224 (524)
T ss_pred HHHHHHHHHHhCcCCc--Eeee-------cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCC---
Confidence 9999999999976542 4432 25666 6799999999998873 2 4788999999999996
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHC------CeEEEEecCH----
Q 009026 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISSK---- 320 (546)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~------~I~vv~~v~~---- 320 (546)
+++++++ .++++++.+.|++|||++++|++.++++|.++ +|++++++++
T Consensus 225 ----------i~~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r 283 (524)
T TIGR02348 225 ----------ISNIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRR 283 (524)
T ss_pred ----------cCCHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchh
Confidence 4555554 47899999999999999999999999999876 8999999965
Q ss_pred -HHHHHHHHHhCCeecc-----ccCCCCCCCcccceeEEEEEECCeEEEEEEecCC------------------------
Q 009026 321 -FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------ 370 (546)
Q Consensus 321 -~~l~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------ 370 (546)
++++|||++|||++++ +++++++++||+|+.|++.+ ++++++.++..
T Consensus 284 ~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~ 360 (524)
T TIGR02348 284 KAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDR 360 (524)
T ss_pred hhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 7999999999999999 89999999999999998865 67888887642
Q ss_pred ----------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHH
Q 009026 371 ----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (546)
Q Consensus 371 ----------~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~ 440 (546)
+++.+||+|||+|+.+++|++|+++||++++|+++++| +|||||++|++++.+|++ +.+.++++++++
T Consensus 361 ~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~ 438 (524)
T TIGR02348 361 EKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGI 438 (524)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHH
Confidence 12378999999999999999999999999999999998 999999999999999998 777888999999
Q ss_pred HHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009026 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (546)
Q Consensus 441 ~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~ 520 (546)
++||+||+.||++|++|||+|+.+++++|++. .+ ++|+|+.+|++.||++.|||||+.||.++|+.|+++|++||+
T Consensus 439 ~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~ 514 (524)
T TIGR02348 439 DIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLT 514 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875 32 489999999999999999999999999999999999999999
Q ss_pred hhhhhhcCC
Q 009026 521 VDQIIMAKP 529 (546)
Q Consensus 521 iD~ii~~~~ 529 (546)
||++|...|
T Consensus 515 id~ii~~~~ 523 (524)
T TIGR02348 515 TEAVVADKP 523 (524)
T ss_pred HHHHhhcCC
Confidence 999997654
No 37
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.3e-85 Score=711.05 Aligned_cols=456 Identities=20% Similarity=0.257 Sum_probs=406.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHH----HHHHHHHHHhhhhhCCCc
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAA----KLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a----~ll~~~~~~~~~~~GDGt 100 (546)
++++++.+++|..++++++|||||+||+|||+++.|+++|||||+|||++|+++||++ +|+++++++|++++||||
T Consensus 9 ~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~GDGT 88 (529)
T CHL00093 9 DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGT 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCceecCCC
Confidence 5899999999999999999999999999999999999999999999999999999998 588889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhH
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (546)
||+++|+++||+++.+|+++|+||..|++||+.|.+.+++.|++++.+ +.|.+.|.++++++.+ +++.|
T Consensus 89 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~------v~d~~~L~~VA~ts~~-----~~~~l 157 (529)
T CHL00093 89 TTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARP------VEDIQAITQVASISAG-----NDEEV 157 (529)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCC------CCCHHHHHHHHHHhcc-----ChHHH
Confidence 999999999999999999999999999999999999999999999875 2378889999887655 58899
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCC--CC---cc----cccCceEEEEEeecccc
Q 009026 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GS---IK----NMEKAKVAVFAGGVDTS 251 (546)
Q Consensus 181 s~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~---~~----~i~n~kI~ll~~~l~~~ 251 (546)
++++++|+.++++++. |+++. .++...++++++|++|++++. ++ ++ .++||+|++++++|++.
T Consensus 158 ~~lv~eAv~~vg~~g~--i~~~~------g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~ 229 (529)
T CHL00093 158 GSMIADAIEKVGREGV--ISLEE------GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLV 229 (529)
T ss_pred HHHHHHHHHHhccCCc--eeecC------CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCch
Confidence 9999999999986543 55431 234456889999999998863 22 33 58999999999998753
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHH--HHHH----CCeEEEEecCH-----
Q 009026 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALH--FCER----YKLMVLKISSK----- 320 (546)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~--~l~~----~~I~vv~~v~~----- 320 (546)
+ ..+.++++.+.+.+++++|++++|++.++. |+++ ++|+++++++.
T Consensus 230 ~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k 286 (529)
T CHL00093 230 Q-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRK 286 (529)
T ss_pred H-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchH
Confidence 2 125578999999999999999999995554 5587 59999999954
Q ss_pred HHHHHHHHHhCCeecc-----ccCCCCCCCcccceeEEEEEECCeEEEEEEe---------cCC----------------
Q 009026 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRN---------EGG---------------- 370 (546)
Q Consensus 321 ~~l~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~---------~~~---------------- 370 (546)
++|+|||.+|||++++ ++++++++++|+|+.|++.+ +++++|++ |+.
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 363 (529)
T CHL00093 287 AMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEK 363 (529)
T ss_pred HHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 7899999999999999 68889989999999999875 67777763 210
Q ss_pred --------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhc-cccchHHHHHH
Q 009026 371 --------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF-KETGLDQYAIA 441 (546)
Q Consensus 371 --------~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~-~~~~~~~~~~~ 441 (546)
++..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++. ..+++++++++
T Consensus 364 l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~ 442 (529)
T CHL00093 364 LQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGAL 442 (529)
T ss_pred HHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 12478899999999999999999999999999999998 999999999999999999987 68899999999
Q ss_pred HHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhch
Q 009026 442 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRV 521 (546)
Q Consensus 442 ~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~i 521 (546)
+||+||+.||++|++|||+|+.+++++++.. +.++|+|+.+|++.||++.|||||+.||.++|+.|+|+|++||+|
T Consensus 443 ~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (529)
T CHL00093 443 IVARAILAPLKRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTT 518 (529)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999754 458999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCC
Q 009026 522 DQIIMAKPA 530 (546)
Q Consensus 522 D~ii~~~~~ 530 (546)
|++|..+|.
T Consensus 519 d~ii~~~~~ 527 (529)
T CHL00093 519 ECIIVDKKE 527 (529)
T ss_pred HHHHHcCCC
Confidence 999998764
No 38
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=5.7e-85 Score=706.13 Aligned_cols=460 Identities=19% Similarity=0.293 Sum_probs=414.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhcccc----ChHHHHHHHHHHHhhhhhCCCc
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQ----HPAAKLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~----hP~a~ll~~~~~~~~~~~GDGt 100 (546)
+++++.|++|+..++++++|||||+||+|||+++.|+++|||||+||+++|+++ ||.++|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~GDGT 89 (546)
T PRK14104 10 VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGT 89 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccccCcc
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhH
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (546)
||+++|+++||+++.+++++|+||..|++||++|.+.+++.|++++++ +.+.+.+.++++++.++ ++.+
T Consensus 90 TTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~------v~~~~~l~~va~~s~~~-----d~~i 158 (546)
T PRK14104 90 TTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKK------VTSNDEIAQVGTISANG-----DAEI 158 (546)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhccc------CCCHHHHHHHHHHHhcC-----chHH
Confidence 999999999999999999999999999999999999999999999876 22456788988776554 5789
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhhhcCCCCc-ccceeEeeEEEeccCC---------CCcccccCceEEEEEeeccc
Q 009026 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (546)
Q Consensus 181 s~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~-~dS~li~Giv~~~~~~---------~~~~~i~n~kI~ll~~~l~~ 250 (546)
++++++|+.++++++. |+++.+ +.. +++++++|++|++++. .++..++||+|++++..
T Consensus 159 ~~lv~~Av~~vg~~g~--i~v~~~-------~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~--- 226 (546)
T PRK14104 159 GKFLADAMKKVGNEGV--ITVEEA-------KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK--- 226 (546)
T ss_pred HHHHHHHHHHhccCCc--eeeEec-------ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh---
Confidence 9999999999986653 666542 345 5899999999998873 23566889999999843
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHH------CCeEEEEecC-----
Q 009026 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLKISS----- 319 (546)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~------~~I~vv~~v~----- 319 (546)
++++++ +.++++.+.+.|++|||++++|++.++++|.. .+|++|++++
T Consensus 227 ----------i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r 285 (546)
T PRK14104 227 ----------LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRR 285 (546)
T ss_pred ----------hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcch
Confidence 455544 44789999999999999999999999999984 6899999998
Q ss_pred HHHHHHHHHHhCCeeccc-----cCCCCCCCcccceeEEEEEECCeEEEEEEecCCC-----------------------
Q 009026 320 KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (546)
Q Consensus 320 ~~~l~~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (546)
+++|+|||.+|||+++++ +++++++++|+|+.+++ ++++++++.+|...
T Consensus 286 ~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (546)
T PRK14104 286 KAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDR 362 (546)
T ss_pred HHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 789999999999999999 88899899999999974 67888999888631
Q ss_pred -----------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHH
Q 009026 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (546)
Q Consensus 372 -----------~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~ 440 (546)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++.. .++++++++
T Consensus 363 ~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~i 440 (546)
T PRK14104 363 EKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIKT-KNDDQKTGV 440 (546)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhhc-CChHHHHHH
Confidence 3899999999999999999999999999999999998 999999999999999998743 578999999
Q ss_pred HHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhc
Q 009026 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (546)
Q Consensus 441 ~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~ 520 (546)
++|++||+.||++|++|||+|+.+++.+|+..| +.++|+|+.+|++.||++.|||||+.||.++|+.|+++|++||+
T Consensus 441 ~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~ 517 (546)
T PRK14104 441 EIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLIT 517 (546)
T ss_pred HHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC---CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754 46799999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCCCC
Q 009026 521 VDQIIMAKPAGGPRRD 536 (546)
Q Consensus 521 iD~ii~~~~~~~~~~~ 536 (546)
||++|..+|..+...+
T Consensus 518 id~~I~~~~~~~~~~~ 533 (546)
T PRK14104 518 TEAMVAELPKKGGAGP 533 (546)
T ss_pred HHHHHhcCCcCCCCCC
Confidence 9999999887655443
No 39
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3.6e-85 Score=711.15 Aligned_cols=459 Identities=21% Similarity=0.301 Sum_probs=413.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChH----HHHHHHHHHHhhhhhCCCch
Q 009026 26 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGAN 101 (546)
Q Consensus 26 ~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGtt 101 (546)
++++..+++|+.|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|+++++++|++++|||||
T Consensus 66 ~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTT 145 (600)
T PLN03167 66 SAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 145 (600)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCcc
Confidence 69999999999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhHH
Q 009026 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILC 181 (546)
Q Consensus 102 t~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ls 181 (546)
|++||+++||+++.+++++|+||..|++||+.|.+.+++.|++++.+ +.+ +.|.++++++.++ ++.|+
T Consensus 146 TvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~------v~d-~~L~~vA~tS~~~-----~~~i~ 213 (600)
T PLN03167 146 TSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKE------VED-SELADVAAVSAGN-----NYEVG 213 (600)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccc------CCH-HHHHHHHHHhccC-----cHHHH
Confidence 99999999999999999999999999999999999999999998875 223 5699998887653 67899
Q ss_pred HHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccc-eeEeeEEEeccCC---------CCcccccCceEEEEEeecccc
Q 009026 182 PLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (546)
Q Consensus 182 ~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS-~li~Giv~~~~~~---------~~~~~i~n~kI~ll~~~l~~~ 251 (546)
+++++|+.++++++. ++++ .|++.+|+ ++++|++|++++. +|+++++||+|+++++.
T Consensus 214 ~liaeAv~~Vg~~g~--i~v~-------~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~---- 280 (600)
T PLN03167 214 NMIAEAMSKVGRKGV--VTLE-------EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK---- 280 (600)
T ss_pred HHHHHHHHHhccCCc--EEec-------cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc----
Confidence 999999999986543 5554 68899987 9999999998862 57889999999999985
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHH------HCCeEEEEecC-----H
Q 009026 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE------RYKLMVLKISS-----K 320 (546)
Q Consensus 252 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~------~~~I~vv~~v~-----~ 320 (546)
+++++++.. +++.+.+.++++||++++|++.++++|. ..+|+++++++ +
T Consensus 281 ---------i~~~~~l~~-----------~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~ 340 (600)
T PLN03167 281 ---------ITNARDLIG-----------ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKS 340 (600)
T ss_pred ---------cCCHHHHHH-----------HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchH
Confidence 577777774 5567788999999999999999999998 68899999996 7
Q ss_pred HHHHHHHHHhCCeecc-----ccCCCCCCCcccceeEEEEE-----ECC--------eEEEEEEecCC------------
Q 009026 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEE-----IGG--------ARVTIVRNEGG------------ 370 (546)
Q Consensus 321 ~~l~~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~-----ig~--------~~~~~~~~~~~------------ 370 (546)
++|+|||.+|||++++ ++++++++++|+|+.|++.+ +|+ +++.+|+++..
T Consensus 341 ~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~ 420 (600)
T PLN03167 341 QYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLN 420 (600)
T ss_pred HHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHH
Confidence 8999999999999999 67888888999999999987 776 47777776531
Q ss_pred -----CCceEEEE-EeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHH-HHHHH
Q 009026 371 -----GNSVSTVV-LRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQY-AIAKF 443 (546)
Q Consensus 371 -----~~~~~TIl-l~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~-~~~~~ 443 (546)
-...+|++ |||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++...++++++ ++++|
T Consensus 421 ~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~ 499 (600)
T PLN03167 421 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIV 499 (600)
T ss_pred HHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 02245555 999999999999999999999999999999 99999999999999999998877787775 59999
Q ss_pred HHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhchhh
Q 009026 444 AESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQ 523 (546)
Q Consensus 444 a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD~ 523 (546)
++||+.||++|++|||+|+.+++++|++. ++.++|||+.+|++.||++.|||||+.||+++|+.|+++|++||+||+
T Consensus 500 ~~Al~~p~r~La~NAG~d~~~vv~~L~~~---~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~ 576 (600)
T PLN03167 500 KRALSYPLKLIAKNAGVNGSVVSEKVLSN---DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDC 576 (600)
T ss_pred HHHHhcchhhhhhcCCCCHHHHHHHHHhc---CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999743 356899999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCC
Q 009026 524 IIMAKPAGGP 533 (546)
Q Consensus 524 ii~~~~~~~~ 533 (546)
+|..+|...+
T Consensus 577 iI~~~~~~~~ 586 (600)
T PLN03167 577 VVVEIKEPEP 586 (600)
T ss_pred HhhcCCCCCC
Confidence 9999876544
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-81 Score=613.82 Aligned_cols=495 Identities=26% Similarity=0.408 Sum_probs=470.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCCCchhHH
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 104 (546)
+.+..-|+.++..+.+++++.+||.|..||++++.|++.+|.||.+.+.+|+++||-+-++..++.+|++..|||||++|
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~V 95 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVV 95 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEE
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhccccc-CchhhHHHH
Q 009026 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPL 183 (546)
Q Consensus 105 lL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~~~ls~l 183 (546)
+|+++|+++|...+..|+||..|.+||+.|.+.++++|+....+ -+++.|..+++|++.+|.. ...+.++++
T Consensus 96 lligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~-------~~~~~L~~va~tsl~Tkv~~~la~~lt~~ 168 (520)
T KOG0359|consen 96 LLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSRE-------VDRETLKDVARTSLRTKVHAELADVLTPI 168 (520)
T ss_pred EeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccc-------hhHHHHHHHHHHhhcCcccHHHHhHhHHH
Confidence 99999999999999999999999999999999999999955443 4689999999999999964 568899999
Q ss_pred HHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccC--CCCcccccCceEEEEEeecccccccccceEEe
Q 009026 184 IADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGGVDTSATETKGTVLI 261 (546)
Q Consensus 184 v~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~--~~~~~~i~n~kI~ll~~~l~~~~~~~~~~v~i 261 (546)
+++|++.+.+ +..++|+.++.|+++..++..|+.+++|++++++. ..||++++|+.|+++|.+|||+|++.++-+-+
T Consensus 169 vv~aVl~i~~-~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffY 247 (520)
T KOG0359|consen 169 VVDSVLCIRR-QEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFY 247 (520)
T ss_pred HHhhheeecc-CCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhc
Confidence 9999999873 22358999999999999999999999999999887 46999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCC----cEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeeccc
Q 009026 262 HNAEQLENYAKTEEAKVEGLIKAVAESGA----EVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLK 337 (546)
Q Consensus 262 ~~~~~l~~~~~~E~~~l~~~v~~l~~~~v----~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ii~~ 337 (546)
++.+|.+.+...|++++.+.+++|++++- -|||+|++|||..++.|+++||+++||.+++.|||+..+||+..+++
T Consensus 248 sta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~ns 327 (520)
T KOG0359|consen 248 STAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNS 327 (520)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecc
Confidence 99999999999999999999999998874 36899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHH
Q 009026 338 LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAAT 417 (546)
Q Consensus 338 l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~ 417 (546)
+++++++.+|+|+.++++++|+++|+|+++|++ ++.|||+++||+++.+.+++.+++|++++++++++++.++||+|++
T Consensus 328 vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~-p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~ 406 (520)
T KOG0359|consen 328 VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNN-PSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAF 406 (520)
T ss_pred cccCChhhccccceeEEeeccceeeEeeecCCC-CcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHH
Confidence 999999999999999999999999999999984 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCcc
Q 009026 418 EIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNV 497 (546)
Q Consensus 418 E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi 497 (546)
|.+++++|+...++.+++.++++++||+||..||++|++|+|+|..+.+.+|...|..+ ..|+|+.+|+..+....||
T Consensus 407 ~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g~~~~~~~~gi 484 (520)
T KOG0359|consen 407 EVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFRGEECDPSRKGI 484 (520)
T ss_pred HHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hcccccccCCccchhhccc
Confidence 99999999988888999999999999999999999999999999999999999998754 4599999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q 009026 498 WDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 530 (546)
Q Consensus 498 ~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~ 530 (546)
||.+.||+++|..++-+|+.||-+|+++++..+
T Consensus 485 ~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~~ 517 (520)
T KOG0359|consen 485 YDNYSVKKQLLRSEAVIATNLLLVDEIIRAGMS 517 (520)
T ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999999999988654
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-70 Score=520.61 Aligned_cols=373 Identities=29% Similarity=0.470 Sum_probs=353.1
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChHHHHHHHHHHHhhhhhCC
Q 009026 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (546)
Q Consensus 19 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (546)
....| -++.++|+.+.++++.+++||+||+|++|+++.+.|++++|||| +|++++++...+..|+.++||
T Consensus 22 ~Ri~G-~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgd 91 (400)
T KOG0357|consen 22 DRLFG-LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGD 91 (400)
T ss_pred chhhH-HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHHhcccchhhhcc
Confidence 34456 49999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchh
Q 009026 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEE 178 (546)
Q Consensus 99 Gttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~ 178 (546)
|||.+++|++.+++++.+++.+|+||..|.+||..+.+.+++.|++++.+ +.
T Consensus 92 GtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~------~e---------------------- 143 (400)
T KOG0357|consen 92 GTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDP------FE---------------------- 143 (400)
T ss_pred CCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccc------cc----------------------
Confidence 99999999999999999999999999999999999999998888776543 10
Q ss_pred hHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccCCCCcccccCceEEEEEeecccccccccce
Q 009026 179 ILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGT 258 (546)
Q Consensus 179 ~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~~~~~~~i~n~kI~ll~~~l~~~~~~~~~~ 258 (546)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeecccc
Q 009026 259 VLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKL 338 (546)
Q Consensus 259 v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ii~~l 338 (546)
+.++++++++.|+++++|||++||.+.++|-+++..++||+.-.++|.||..||++|+++|
T Consensus 144 -------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF 204 (400)
T KOG0357|consen 144 -------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRF 204 (400)
T ss_pred -------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccH
Confidence 3468889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccceeEEEEEEC--CeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCH
Q 009026 339 CQPNPDDLGYVDSVSVEEIG--GARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAA 416 (546)
Q Consensus 339 ~~l~~~~lG~~~~v~~~~ig--~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~ 416 (546)
+++++++||+|+.|++..+| .+|+..+++|++ ++.+||.+||+++.+++|.||++|||||++|+++++.++|+|||+
T Consensus 205 ~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~n-skaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGa 283 (400)
T KOG0357|consen 205 SELTAEKLGFAGLVREISFGTTKDKMLVIEQCKN-SKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGA 283 (400)
T ss_pred hhhCHhhccccceEEEEecccccceEEEEEecCC-CceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCch
Confidence 99999999999999999999 479999999985 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhc-CCCceeEeccCCcccccccC
Q 009026 417 TEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS-GKTKVGIDLENGVCADISTM 495 (546)
Q Consensus 417 ~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~-~~~~~Gid~~~g~i~d~~~~ 495 (546)
+|+.||-++.+.+.++++.+||++++||+|||+||..|++|||++|++.++++++.+-. .++++|+|+....-.||++.
T Consensus 284 aEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~ 363 (400)
T KOG0357|consen 284 AEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQ 363 (400)
T ss_pred HHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999988754 56789999998888999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q 009026 496 NVWDLYVTKFFALKYAADAACTVLRVDQIIMAKP 529 (546)
Q Consensus 496 gi~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~ 529 (546)
+|+|++..|++.+..|++++.|||+||+|+....
T Consensus 364 ~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 364 HVIETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred ccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 9999999999999999999999999999987643
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-48 Score=392.03 Aligned_cols=457 Identities=20% Similarity=0.292 Sum_probs=384.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEecCHHHHHHhccccChH----HHHHHHHHHHhhhhhCCCc
Q 009026 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGA 100 (546)
Q Consensus 25 ~~~~~~~i~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGt 100 (546)
.+++...++++..|++++..|+||+||+++|-+..|.|.|||||.|+.+++.+.+++ |+++++.+....+..||||
T Consensus 23 ~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~agdGt 102 (550)
T KOG0356|consen 23 KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEEAGDGT 102 (550)
T ss_pred HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCccccCc
Confidence 479999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhcccccCchhhH
Q 009026 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (546)
Q Consensus 101 tt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (546)
||+.+|+.++.+++.+-+.+|..|..|.+|...+.+...+.|.+++.+ +...+++.+++.. + .+.+.++
T Consensus 103 ttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~------Vtt~eeIaqVAti--S---AngD~~i 171 (550)
T KOG0356|consen 103 TTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKP------VTTPEEIAQVATI--S---ANGDKEI 171 (550)
T ss_pred chHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCC------CCCHHHHHHHHhh--h---cCCcHHH
Confidence 999999999999999999999999999999999999999999999886 4568888988653 3 3458889
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcc-cceeEeeEEEeccCCC---------CcccccCceEEEEEeeccc
Q 009026 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLH-NSTIVRGMVLKSDAVG---------SIKNMEKAKVAVFAGGVDT 250 (546)
Q Consensus 181 s~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~-dS~li~Giv~~~~~~~---------~~~~i~n~kI~ll~~~l~~ 250 (546)
.+++.+|+.++++++. +.+. .|.... +-++++|+-|++++.+ +..++++|++++..-.
T Consensus 172 g~li~~a~~kvG~~GV--Itv~-------~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk--- 239 (550)
T KOG0356|consen 172 GNLISDAMKKVGRKGV--ITVK-------DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK--- 239 (550)
T ss_pred HHHHHHHHHHhCcCCe--EEee-------cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh---
Confidence 9999999999998775 4443 455665 4589999999998631 2334566666654433
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHH--H----CCeEEEEecCH----
Q 009026 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE--R----YKLMVLKISSK---- 320 (546)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~--~----~~I~vv~~v~~---- 320 (546)
+++++++. +.++.-.+...++++....++..++..|- + ..+++++.++.
T Consensus 240 ----------i~~v~~iv-----------p~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnr 298 (550)
T KOG0356|consen 240 ----------ISSVQSIV-----------PALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNR 298 (550)
T ss_pred ----------hhHHHHHh-----------HHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchH
Confidence 45555555 45555556667899999999998877654 3 44777888764
Q ss_pred -HHHHHHHHHhCCeecc------ccCCCCCCCcccceeEEEEEEC-----C--------eEEEEEEe-----------c-
Q 009026 321 -FELRRFCRTTGAVAML------KLCQPNPDDLGYVDSVSVEEIG-----G--------ARVTIVRN-----------E- 368 (546)
Q Consensus 321 -~~l~~ia~~tGa~ii~------~l~~l~~~~lG~~~~v~~~~ig-----~--------~~~~~~~~-----------~- 368 (546)
..+.+++.+||+.++. +++..+.+++|.|..+.+..-. + .++..++. .
T Consensus 299 k~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ek 378 (550)
T KOG0356|consen 299 KNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEK 378 (550)
T ss_pred HHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhH
Confidence 4599999999999986 3456677899999999876511 0 00000000 0
Q ss_pred ------CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHH
Q 009026 369 ------GGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAK 442 (546)
Q Consensus 369 ------~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~ 442 (546)
+.+..+++|.++|.++.+++|.+.+++||++++++++++| +|||||++.++++..|.+....-...++.++++
T Consensus 379 l~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~ei 457 (550)
T KOG0356|consen 379 LNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEI 457 (550)
T ss_pred HHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHH
Confidence 0157899999999999999999999999999999999999 999999999999999998765334467788999
Q ss_pred HHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeEeccCCcccccccCccccchHHHHHHHHHHHHHHHHHhchh
Q 009026 443 FAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVD 522 (546)
Q Consensus 443 ~a~aLe~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~Gid~~~g~i~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~iD 522 (546)
+.+||..|..++++|+|.|+..++.+++. ..+|||..+|+++||.+.|++||+.|-+.+|..|..+|+++++++
T Consensus 458 v~~Al~~P~~~IakNAGvdg~~vv~Kv~~------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte 531 (550)
T KOG0356|consen 458 VKKALRLPAQTIAKNAGVDGSVVVEKVLN------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTE 531 (550)
T ss_pred HHHHHhhhHHHHHHhcCCchHHHHHHHHh------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhhe
Confidence 99999999999999999999999999982 278999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCC
Q 009026 523 QIIMAKPAGG 532 (546)
Q Consensus 523 ~ii~~~~~~~ 532 (546)
.+|...|..-
T Consensus 532 ~vvteipk~~ 541 (550)
T KOG0356|consen 532 AVVTEIPKEE 541 (550)
T ss_pred eEEEeccccc
Confidence 9998877744
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=5.3e-40 Score=324.73 Aligned_cols=229 Identities=18% Similarity=0.253 Sum_probs=209.7
Q ss_pred CchhhHHHHHHHHHHHhcCCC--CCccccc-chhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEEeecc
Q 009026 175 GQEEILCPLIADACIQVCPKN--PANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVD 249 (546)
Q Consensus 175 ~~~~~ls~lv~~a~~~v~~~~--~~~~~~~-~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~~~l~ 249 (546)
.|.++|++++++|+..+.+.. ...+|++ +|+|++++||++.||++++|+++++.+. .||+.++||||++++++|+
T Consensus 18 ~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le 97 (261)
T cd03334 18 SWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLE 97 (261)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeec
Confidence 457899999999999986431 1358876 5999999999999999999999999874 5899999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHH
Q 009026 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (546)
Q Consensus 250 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~ 329 (546)
+++++ +++++++.+.+.|++++++++++|.+.|+|||||+++|++.+++||.++||++++++++++|+|||++
T Consensus 98 ~~~~~-------~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~ 170 (261)
T cd03334 98 YQRVE-------NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRC 170 (261)
T ss_pred ccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHH
Confidence 99886 34678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccc-CCCCCCCcccceeEEEEEECC-----eEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Q 009026 330 TGAVAMLKL-CQPNPDDLGYVDSVSVEEIGG-----ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKA 403 (546)
Q Consensus 330 tGa~ii~~l-~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~ 403 (546)
|||++++++ +.++++.+|+|++|++.++|+ ++|++|++|+ .++++||+|||+|+.+++|+||+++||++++++
T Consensus 171 tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~-~~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~ 249 (261)
T cd03334 171 TGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCP-KELGCTILLRGGDLEELKKVKRVVEFMVFAAYH 249 (261)
T ss_pred hCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCC-CCceeEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999994 578899999999999999996 6999999997 488999999999999999999999999999999
Q ss_pred HhhCCeee
Q 009026 404 MCRDSRIV 411 (546)
Q Consensus 404 ~~~~~~vv 411 (546)
+..++.++
T Consensus 250 ~~le~~~~ 257 (261)
T cd03334 250 LKLETSFL 257 (261)
T ss_pred HHHhHHHH
Confidence 98877443
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=3.8e-35 Score=282.46 Aligned_cols=206 Identities=27% Similarity=0.459 Sum_probs=192.1
Q ss_pred HHHHHHHHhhhcccccCchhhHHHHHHHHHHHhcCCCCCcccccchhhhhcCCCCcccceeEeeEEEeccC--CCCcccc
Q 009026 159 EEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNM 236 (546)
Q Consensus 159 ~~l~~i~~t~l~sk~~~~~~~ls~lv~~a~~~v~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Giv~~~~~--~~~~~~i 236 (546)
+.|.++++|+++||...+.+.|++++++|+..+.++.. .++.++|+|++++||+++||++++|++|++++ ..|++.+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~-~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~ 80 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNR-MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRL 80 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCC-CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEc
Confidence 46889999999999855799999999999999976432 47778999999999999999999999999988 4689999
Q ss_pred cCceEEEEEeecccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEE
Q 009026 237 EKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK 316 (546)
Q Consensus 237 ~n~kI~ll~~~l~~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~ 316 (546)
+||||++++++|++ ||+++++|++.+++||.++||++++
T Consensus 81 ~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~~v~ 119 (209)
T cd03333 81 ENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIMAVR 119 (209)
T ss_pred CCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCEEEE
Confidence 99999999999876 9999999999999999999999999
Q ss_pred ecCHHHHHHHHHHhCCeeccccCCCCCCCcccceeEEEEEECCeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHH
Q 009026 317 ISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDD 396 (546)
Q Consensus 317 ~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~d 396 (546)
++++++|+|||++|||++++++++++++.+|+|++|++.++|+++|++|.+++ .+.+|||+||||++.+++|+||+++|
T Consensus 120 ~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~-~~~~~tIllrG~t~~~l~e~kr~l~d 198 (209)
T cd03333 120 RVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCK-GGKAATILLRGATEVELDEVKRSLHD 198 (209)
T ss_pred eCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCC-CCCEEEEEEECCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887 48899999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 009026 397 GVNTYKAMCRD 407 (546)
Q Consensus 397 al~~l~~~~~~ 407 (546)
|++++++++++
T Consensus 199 al~~~~~~~~~ 209 (209)
T cd03333 199 ALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHhhC
Confidence 99999998764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-20 Score=211.07 Aligned_cols=233 Identities=16% Similarity=0.239 Sum_probs=201.6
Q ss_pred chhhHHHHHHHHHHHhcCCCC--Ccccc-cchhhhhcCCCCcccceeEeeEEEeccCC--CCcccccCceEEEEEeeccc
Q 009026 176 QEEILCPLIADACIQVCPKNP--ANFNV-DNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDT 250 (546)
Q Consensus 176 ~~~~ls~lv~~a~~~v~~~~~--~~~~~-~~I~i~k~~Gg~~~dS~li~Giv~~~~~~--~~~~~i~n~kI~ll~~~l~~ 250 (546)
|.+.+..++++|...+.++.. +..|. ++|+|.++.||...||+++.|+++.+... .|..++++|||+++.++|++
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~ley 412 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEY 412 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhh
Confidence 567899999999999887521 12333 68999999999999999999999999884 68999999999999999999
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHh
Q 009026 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTT 330 (546)
Q Consensus 251 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~t 330 (546)
.+-..+ +.+ ++.+.++|.++++..|.+|...+++++++.++|+..|++||...+|.++-++++.-|+||+++|
T Consensus 413 qrisn~----lsS---~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~t 485 (1598)
T KOG0230|consen 413 QRISNQ----LSS---IETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCT 485 (1598)
T ss_pred hhhhcc----ccc---hHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHh
Confidence 865432 444 4455566899999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeccccCCCCCCCcccceeEEEEEEC-----CeEEEEEEecCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHh
Q 009026 331 GAVAMLKLCQPNPDDLGYVDSVSVEEIG-----GARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (546)
Q Consensus 331 Ga~ii~~l~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~~~~~~~~~~TIll~G~~~~~l~e~~r~~~dal~~l~~~~ 405 (546)
||.|+++++.++...+|+|+.|++.++- .+.+.+|++|+ .+.+|||+|||.....+.+.++.++-+..+..+..
T Consensus 486 ga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~-~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~ 564 (1598)
T KOG0230|consen 486 GADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCP-KPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLA 564 (1598)
T ss_pred cCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCC-CCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988765 46788999998 58999999999999999999999999998888875
Q ss_pred hCCeeecCCCH
Q 009026 406 RDSRIVPGAAA 416 (546)
Q Consensus 406 ~~~~vvpGGG~ 416 (546)
-+..++.--|+
T Consensus 565 LE~SflaDe~a 575 (1598)
T KOG0230|consen 565 LETSFLADEGA 575 (1598)
T ss_pred HhhhhhhccCC
Confidence 55444444443
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=68.46 E-value=19 Score=31.22 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ 333 (546)
...+.|++.|+++|+|. .+.+-+..+|++.||-++...+...=+.|-....+.
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~ 108 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGE 108 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcCC
Confidence 35777899999999998 679999999999999999998844444455544443
No 47
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=62.07 E-value=18 Score=29.71 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecC
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~ 319 (546)
...+.|...++++|+|. .+.+.+...|.++||-++...+
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 45566677899999996 6999999999999999998776
No 48
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=60.08 E-value=38 Score=27.37 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCcEEEeCCcccHHHH----HHHHHCCeEEEEecCHHHHHHHHHH
Q 009026 278 VEGLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRT 329 (546)
Q Consensus 278 l~~~v~~l~~~~v~vVi~~~~i~~~~~----~~l~~~~I~vv~~v~~~~l~~ia~~ 329 (546)
+++-++.|.+-.+.+|+..+++++... .+|.++||.++.-.++.+|-+.|-.
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcgi 73 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGI 73 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCC
Confidence 446677777777899999999998655 4567899999999999888877654
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=55.19 E-value=37 Score=27.74 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecC
Q 009026 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (546)
Q Consensus 281 ~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~ 319 (546)
..+.+...++++|+|.+ +.+.+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 44556678999999985 999999999999999998775
No 50
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=52.27 E-value=47 Score=26.69 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=31.6
Q ss_pred HHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecC
Q 009026 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (546)
Q Consensus 281 ~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~ 319 (546)
..+.|...++++|||. .+.+.+...|.++||-++....
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEESTS
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcCC
Confidence 4455567899999988 5799999999999999999743
No 51
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=42.69 E-value=97 Score=24.78 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHH----HHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGAV 333 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~----~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ 333 (546)
+.++.|.+-.+.+||...+.++... +++.+++|.++...++.+ |..++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~e---LG~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKK---LGKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHHCCC
Confidence 4566677778899999999998544 456789999988876655 45555543
No 52
>PRK07714 hypothetical protein; Provisional
Probab=39.74 E-value=1.2e+02 Score=25.23 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHH----HHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGA 332 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~----~~l~~~~I~vv~~v~~~~l~~ia~~tGa 332 (546)
...+.+.+-.+.+||...+.++... +++..++|.++...++++| ..++|-
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eL---G~a~Gk 78 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQL---GHAIGK 78 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHH---HHHhCC
Confidence 4556677777889999999988544 4456789999988776555 455554
No 53
>PRK06683 hypothetical protein; Provisional
Probab=38.96 E-value=1.2e+02 Score=24.35 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHH----HHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGAV 333 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~----~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ 333 (546)
+.++.|.+-.+.+||...+.++... +++..++|.++...++. .|..++|-.
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~---eLG~A~G~~ 72 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVR---KLGKVAGIQ 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHH---HHHHHhCCc
Confidence 3556667778899999999998655 44678999998887654 455566654
No 54
>PF12846 AAA_10: AAA-like domain
Probab=38.35 E-value=77 Score=31.25 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCCcEEEeCCcccHHH-----HHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009026 276 AKVEGLIKAVAESGAEVIVSGAAVGEMA-----LHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (546)
Q Consensus 276 ~~l~~~v~~l~~~~v~vVi~~~~i~~~~-----~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ 333 (546)
+.+.+++....+.|+.+++....++++. ..++...+..++-++...+.+.+++..|.+
T Consensus 240 ~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 240 EFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 3455788888999999999999999988 789999999999999988888899998865
No 55
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=38.04 E-value=82 Score=25.58 Aligned_cols=50 Identities=22% Similarity=0.384 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcEEEeCCcccHH-----HHHHHHHCCeEEEEecCHHHHHHHH
Q 009026 278 VEGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFC 327 (546)
Q Consensus 278 l~~~v~~l~~~~v~vVi~~~~i~~~-----~~~~l~~~~I~vv~~v~~~~l~~ia 327 (546)
+++..+.+.+-.+.+||.+.++++. ...++.+++|.++...++.+|-+.+
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eLG~~~ 74 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEELGRAC 74 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHHHHHT
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHHHHHH
Confidence 3456666777778899888888772 3356789999999998665554443
No 56
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=37.45 E-value=1.3e+02 Score=24.16 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHH----HHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGAV 333 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~----~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ 333 (546)
+.++.|.+-.+.+||...+.++... +++..++|.++..-++.+ |.+++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~e---LG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKE---LGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHH---HHHHHCCc
Confidence 3556667778899999999998555 446679999977665554 45555543
No 57
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=36.74 E-value=1.1e+02 Score=28.15 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEe--cC-H----HHHHHHHHHhCCe
Q 009026 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKI--SS-K----FELRRFCRTTGAV 333 (546)
Q Consensus 282 v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~--v~-~----~~l~~ia~~tGa~ 333 (546)
++.|.+.+++|||......+...+.|.+.||.++-. .+ . +.++.++.++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 455678899999987655555667889999854322 22 2 3467777777753
No 58
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=36.26 E-value=92 Score=31.08 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=39.3
Q ss_pred HHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEe-c-C----HHHHHHHHHHhCCe
Q 009026 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKI-S-S----KFELRRFCRTTGAV 333 (546)
Q Consensus 282 v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~-v-~----~~~l~~ia~~tGa~ 333 (546)
++.|...++||||.....++...+.|.+.||.++-- . + .+.++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 556788899999998888887788899999766532 1 2 24578888888865
No 59
>PRK07283 hypothetical protein; Provisional
Probab=35.78 E-value=1.4e+02 Score=24.63 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHH----HHHHHCCeEEEEecCHHHHHHHHHHhC
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTG 331 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~----~~l~~~~I~vv~~v~~~~l~~ia~~tG 331 (546)
...+.|.+-.+.+||.+.+.++... +.+..++|.++...++++ |..++|
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~e---LG~a~G 77 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLE---LSAAVG 77 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhC
Confidence 4556667777899999999998776 556678999988876654 555565
No 60
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=34.99 E-value=1.5e+02 Score=24.63 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHH----HHHHHHCCeEEEEec-CHHHHHHHHHHhCC
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMA----LHFCERYKLMVLKIS-SKFELRRFCRTTGA 332 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~----~~~l~~~~I~vv~~v-~~~~l~~ia~~tGa 332 (546)
+.++.|.+..+.+||.+.+.++.. .+++.+++|.++... ++++ |.+++|-
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~e---LG~a~Gk 77 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVE---LGTLCGK 77 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHH---HHHHhCC
Confidence 456667777889999988888744 456678999998874 5555 4555663
No 61
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=34.69 E-value=1.2e+02 Score=28.39 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCcEEEeCCcccHHHHHHHHHCC----eEEEEecCH
Q 009026 276 AKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK----LMVLKISSK 320 (546)
Q Consensus 276 ~~l~~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~----I~vv~~v~~ 320 (546)
..+++.++.+.+.++++|+++.+.++.+.-+|.+.. |.+++.++.
T Consensus 76 p~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn 124 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSN 124 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeec
Confidence 468899999999999999999999998777776544 888777653
No 62
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.74 E-value=1.3e+02 Score=28.85 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=37.3
Q ss_pred HHHHHhcCCcEEEeCCcccHH-HHHHHHHCCeEEEEec--C----HHHHHHHHHHhCCe
Q 009026 282 IKAVAESGAEVIVSGAAVGEM-ALHFCERYKLMVLKIS--S----KFELRRFCRTTGAV 333 (546)
Q Consensus 282 v~~l~~~~v~vVi~~~~i~~~-~~~~l~~~~I~vv~~v--~----~~~l~~ia~~tGa~ 333 (546)
++.|.+.+++|||.....++. ..+.|.+.|+.++-.- . .+.++.|+.++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 566788899999987654443 4778899998665432 2 34588899998875
No 63
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=30.68 E-value=1.7e+02 Score=25.15 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCcEEEeCCcccHH-H----HHHHHHCCeEEEEecCHHHHHHHHH
Q 009026 279 EGLIKAVAESGAEVIVSGAAVGEM-A----LHFCERYKLMVLKISSKFELRRFCR 328 (546)
Q Consensus 279 ~~~v~~l~~~~v~vVi~~~~i~~~-~----~~~l~~~~I~vv~~v~~~~l~~ia~ 328 (546)
++..+.|.+-.+.+||.+.++++. . .+++.+.+|..+..-++++|-+.+-
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~a~G 86 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGAAAG 86 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhC
Confidence 355666666678899999999763 2 3456788999888777666554443
No 64
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=30.55 E-value=1.7e+02 Score=24.28 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=27.0
Q ss_pred cCCcEEEeCCcccHHHHHHHHHCCeEEEEecC
Q 009026 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (546)
Q Consensus 288 ~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~ 319 (546)
.++++||+. ++.+.+...|.++||-++....
T Consensus 64 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 589999887 7899999999999999996654
No 65
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=30.28 E-value=1.8e+02 Score=25.02 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCcEEEeCCcccH-----HHHHHHHHCCeEEEEecCHHHHHHHHH
Q 009026 278 VEGLIKAVAESGAEVIVSGAAVGE-----MALHFCERYKLMVLKISSKFELRRFCR 328 (546)
Q Consensus 278 l~~~v~~l~~~~v~vVi~~~~i~~-----~~~~~l~~~~I~vv~~v~~~~l~~ia~ 328 (546)
+++..+.|.+-.+.+|+.+.+++| ....+|++++|.++.-.++.+|-+.+-
T Consensus 32 ~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~g 87 (116)
T COG1358 32 TNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAVG 87 (116)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhC
Confidence 445666666767899999999995 233467789999999999888876654
No 66
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=30.00 E-value=1.8e+02 Score=25.19 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCcEEEeCCcccHH-H----HHHHHHCCeEEEEecCHHHHHHHH
Q 009026 278 VEGLIKAVAESGAEVIVSGAAVGEM-A----LHFCERYKLMVLKISSKFELRRFC 327 (546)
Q Consensus 278 l~~~v~~l~~~~v~vVi~~~~i~~~-~----~~~l~~~~I~vv~~v~~~~l~~ia 327 (546)
.++.++.|.+-.+.+||...++++. . ..++.+++|.++..-++++|-+.+
T Consensus 35 ~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG~a~ 89 (122)
T PRK04175 35 TNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLGKAA 89 (122)
T ss_pred HHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 3356666677778899999999773 2 234678899988777665544433
No 67
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=29.89 E-value=1.3e+02 Score=31.37 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEec---C----HHHHHHHHHHhCCe
Q 009026 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS---S----KFELRRFCRTTGAV 333 (546)
Q Consensus 281 ~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v---~----~~~l~~ia~~tGa~ 333 (546)
=+++|...++||||....-++...+.|.+.||.++... + .+.++.+.+++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 46778899999999876555566788899999886543 1 14467777877764
No 68
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=28.05 E-value=2e+02 Score=24.55 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecC----HHHHHHHHHHhCCee
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGAVA 334 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~----~~~l~~ia~~tGa~i 334 (546)
..++.+ .++++|||. +|.+.+...|.+.||.+++.-. .+-|+.+.+.+-..+
T Consensus 56 ~~~~~l--~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~~ 111 (119)
T TIGR02663 56 PKIEAL--KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKGNP 111 (119)
T ss_pred HHHHHh--CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCCC
Confidence 344444 588999987 7899999999999999997432 355777777764443
No 69
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=27.06 E-value=2e+02 Score=24.30 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHH----HHHHHHCCeEEEEe-cCHHHHHHHHHHhCC
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMA----LHFCERYKLMVLKI-SSKFELRRFCRTTGA 332 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~----~~~l~~~~I~vv~~-v~~~~l~~ia~~tGa 332 (546)
+.++.|.+-.+.+||++.+.++.. .+++...+|.++.. -++.+ |.+++|-
T Consensus 32 ~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~e---LG~A~Gk 86 (108)
T PTZ00106 32 STLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNND---LGTACGR 86 (108)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHH---HHHHhCC
Confidence 556677777889999999998854 45677899999875 55544 5556664
No 70
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=26.77 E-value=2.4e+02 Score=23.61 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHHH----HHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCRTTGAV 333 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~~----~l~~~~I~vv~~v~~~~l~~ia~~tGa~ 333 (546)
...+.|.+-.+.+||...+.++.... ++...+|.++...++++ |..++|=.
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e---Lg~a~Gk~ 78 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE---LGNAIGRD 78 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH---HHHHhCCC
Confidence 35556677778999999999885544 44567999988876655 55566643
No 71
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=25.96 E-value=64 Score=28.09 Aligned_cols=54 Identities=9% Similarity=0.191 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCcc--cHHHHHHHHHCCeEEEEecC
Q 009026 266 QLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV--GEMALHFCERYKLMVLKISS 319 (546)
Q Consensus 266 ~l~~~~~~E~~~l~~~v~~l~~~~v~vVi~~~~i--~~~~~~~l~~~~I~vv~~v~ 319 (546)
++..+.+-..+..++.++++.+.++++||.+.+. ++...+.++++++.+++-..
T Consensus 58 E~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 58 ESAYLNSLDEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HHHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 3333333344455678888899999998887776 45788889999999997654
No 72
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.91 E-value=1.7e+02 Score=28.21 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=35.1
Q ss_pred HHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecC----HHHHHHHHHHhCCe
Q 009026 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGAV 333 (546)
Q Consensus 281 ~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~----~~~l~~ia~~tGa~ 333 (546)
=++.|...++|+||+.....+ ..+-|.+.+..++-..+ .+.++.++.++|-.
T Consensus 58 ~~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 58 NLEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred CHHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 355677889999998876655 66667776644432222 35688888888764
No 73
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=25.76 E-value=3.3e+02 Score=23.20 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=41.1
Q ss_pred HHhcCCcEEEeCCcc------cHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCe
Q 009026 285 VAESGAEVIVSGAAV------GEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (546)
Q Consensus 285 l~~~~v~vVi~~~~i------~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ 333 (546)
+...++.+|++.-++ ++.+..+|.+.++-++..+..+-++|.-..-|+.
T Consensus 57 ~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 57 LLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 344689998886554 7899999999999999999999999998888763
No 74
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=25.54 E-value=2.7e+02 Score=28.34 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeec
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ii 335 (546)
+.++.+.+.++++|.+..+.++.....+++.|+.++-.+..-+.-+-+.-.|+..+
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 46677788899999888777777788899999998877665444344444566544
No 75
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=24.83 E-value=69 Score=34.26 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhcc
Q 009026 391 ERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFK 431 (546)
Q Consensus 391 ~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~ 431 (546)
+|.+.+|+..+|++ +.|-+|.|||+-.-.....|+.+++.
T Consensus 216 ~~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 35677888888876 67789999999888888888877765
No 76
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.53 E-value=1.6e+02 Score=26.84 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=33.3
Q ss_pred HHHHHhcCCcEEEeCCcccHH-HHHHHHHCCeEEEEecC-------HHHHHHHHHHhC
Q 009026 282 IKAVAESGAEVIVSGAAVGEM-ALHFCERYKLMVLKISS-------KFELRRFCRTTG 331 (546)
Q Consensus 282 v~~l~~~~v~vVi~~~~i~~~-~~~~l~~~~I~vv~~v~-------~~~l~~ia~~tG 331 (546)
++.|...+++|||......+. ....|.+.||.++--.. .+.++.+..++|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 567788999999986655553 77888999975533321 133556666666
No 77
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=24.15 E-value=2.1e+02 Score=23.51 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.0
Q ss_pred cCCcEEEeCCcccHHHHHHHHHCCeEEEEecC
Q 009026 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (546)
Q Consensus 288 ~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~ 319 (546)
.++++|||. +|.+.+...|.++||.++....
T Consensus 60 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 488998887 7899999999999999997664
No 78
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=24.08 E-value=1.5e+02 Score=29.01 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCH
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK 320 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~ 320 (546)
+++.+....|+++|++...-..++.++..+.||..+..+..
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~ 223 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARN 223 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecC
Confidence 57888899999999999999999999999999999887764
No 79
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.83 E-value=2.7e+02 Score=28.53 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeec
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa~ii 335 (546)
+.++.+.+.++.+|++..+.+.. .+.|.+.||.++-.+..-..-+-+.-.|+..+
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 46777788999999998887765 57899999999977765443344555677554
No 80
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=23.04 E-value=2.8e+02 Score=23.81 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCcEEEeCC-----cccHHHHHHHHHCCeEEEEecCHHHH
Q 009026 277 KVEGLIKAVAESGAEVIVSGA-----AVGEMALHFCERYKLMVLKISSKFEL 323 (546)
Q Consensus 277 ~l~~~v~~l~~~~v~vVi~~~-----~i~~~~~~~l~~~~I~vv~~v~~~~l 323 (546)
.+.++++.+.+.|+--+.... .+++.+.++++++++.++.-+..--+
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~~~f 111 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWEVPF 111 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCCCCH
Confidence 455788999999886555543 48899999999999999988764333
No 81
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=22.87 E-value=2.2e+02 Score=27.94 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=34.7
Q ss_pred HHHHHhcCCcEEEeCCc-ccHHHHHHHHHCCeEEEEec--CH----HHHHHHHHHhCCe
Q 009026 282 IKAVAESGAEVIVSGAA-VGEMALHFCERYKLMVLKIS--SK----FELRRFCRTTGAV 333 (546)
Q Consensus 282 v~~l~~~~v~vVi~~~~-i~~~~~~~l~~~~I~vv~~v--~~----~~l~~ia~~tGa~ 333 (546)
++.|...++||||...+ -.+...+.|.+.||.++..- +. +.++.+++++|-.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQP 123 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCCH
Confidence 45667889999998543 34556677889888776542 22 3466777777753
No 82
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=22.56 E-value=1.6e+02 Score=29.24 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCcEEEeCCcccHHHHHHHHHCCeEEEEecCH
Q 009026 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK 320 (546)
Q Consensus 280 ~~v~~l~~~~v~vVi~~~~i~~~~~~~l~~~~I~vv~~v~~ 320 (546)
+++.+....|+++|++...-..++.++..+.||..+..+..
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~ 252 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARG 252 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecC
Confidence 58888899999999999999999999999999999887654
No 83
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=22.36 E-value=1.4e+02 Score=26.98 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCeeecCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhHhHHHHHHhcCCCHH
Q 009026 386 ILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAM 463 (546)
Q Consensus 386 ~l~e~~r~~~dal~~l~~~~~~~~vvpGGG~~E~~la~~L~~~~~~~~~~~~~~~~~~a~aLe~ip~~L~~NaG~~~~ 463 (546)
.-.+++.-.+.-..-++.-.+.|.++|-. ...+.+ ...++++.+.|+++|-+|.+.+|+.+.
T Consensus 65 ~p~dRK~w~qsE~eRlk~e~e~g~Lipa~--------eV~~~~--------s~~~Kav~q~LetlPD~LERd~gL~p~ 126 (152)
T PF07278_consen 65 TPKDRKAWWQSENERLKFEKETGQLIPAE--------EVRREM--------SEMAKAVVQVLETLPDILERDAGLPPE 126 (152)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcccCcHH--------HHHHHH--------HHHHHHHHHHHHHhhHHHHhcCCCCHH
Confidence 34455555555555555555666666532 111222 235678999999999999999999983
No 84
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=21.73 E-value=2.6e+02 Score=26.68 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=35.5
Q ss_pred HHHHHhcCCcEEEeCCc-ccHHHHHHHHHCCeEEEEe--c-C----HHHHHHHHHHhCCe
Q 009026 282 IKAVAESGAEVIVSGAA-VGEMALHFCERYKLMVLKI--S-S----KFELRRFCRTTGAV 333 (546)
Q Consensus 282 v~~l~~~~v~vVi~~~~-i~~~~~~~l~~~~I~vv~~--v-~----~~~l~~ia~~tGa~ 333 (546)
++.|.+.+++||+.... .+....+.|.+.||.++-. . + .+.++.++.++|-.
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g~e 110 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALGVP 110 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 36678889999998654 3445667889999876543 2 2 23466777777764
No 85
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=20.96 E-value=3.8e+02 Score=20.31 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHhhhc
Q 009026 109 EILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (546)
Q Consensus 109 ~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~ 170 (546)
.|++.+..+..+|+++.. .+...+...+..+++...+ .-+.+.+..+++|+..
T Consensus 15 ~lf~~a~~~~~~~v~~~~---~~~~~v~~~~~~~N~~~~~------PL~~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 15 TLFRLARRLAYRGVDQEE---QFRQEVLSLAQAINSNFSP------PLPESEVKAIAKSIAK 67 (71)
T ss_pred HHHHHHHHHHHhCCCHhH---HHHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHH
Confidence 466777777788888888 4544444444555554333 2356778888877644
No 86
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=20.66 E-value=2.6e+02 Score=27.10 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=39.7
Q ss_pred HHHHHHHhcC--CcEEEe--CCcccHHHHHHHHHCCeEEEEecCHHHHHHHHHHhCC
Q 009026 280 GLIKAVAESG--AEVIVS--GAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (546)
Q Consensus 280 ~~v~~l~~~~--v~vVi~--~~~i~~~~~~~l~~~~I~vv~~v~~~~l~~ia~~tGa 332 (546)
..++++++.. -++|+. .+.-|+....+|..+|+.|++--..+.|+|++.+..+
T Consensus 33 ~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrGs~~dVL~Rf~~a~~a 89 (241)
T COG1861 33 YQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVFRGSEEDVLQRFIIAIKA 89 (241)
T ss_pred HHHHHHhccccccceEEEecCCcchhHHHHHHHHcCeeEecCCHHHHHHHHHHHHHh
Confidence 4566666554 345543 4455667778999999999999888999999988765
Done!