Query 009027
Match_columns 546
No_of_seqs 343 out of 1659
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 19:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0654 UbiH 2-polyprenyl-6-me 100.0 1.2E-32 2.7E-37 292.4 30.0 345 110-488 2-366 (387)
2 PRK08020 ubiF 2-octaprenyl-3-m 100.0 2.5E-32 5.5E-37 289.7 28.8 344 110-488 5-372 (391)
3 PRK08013 oxidoreductase; Provi 100.0 1.3E-32 2.8E-37 293.5 26.6 311 110-443 3-336 (400)
4 PRK06617 2-octaprenyl-6-methox 100.0 2.5E-32 5.5E-37 288.7 26.5 327 110-488 1-354 (374)
5 PRK08773 2-octaprenyl-3-methyl 100.0 9.1E-32 2E-36 285.8 29.6 339 110-488 6-373 (392)
6 PLN00093 geranylgeranyl diphos 100.0 9.6E-30 2.1E-34 274.7 39.8 348 109-496 38-409 (450)
7 TIGR01989 COQ6 Ubiquinone bios 100.0 6.7E-31 1.5E-35 283.4 28.9 349 111-488 1-424 (437)
8 PRK06185 hypothetical protein; 100.0 1.4E-30 3.1E-35 277.7 31.0 342 109-488 5-375 (407)
9 PRK05714 2-octaprenyl-3-methyl 100.0 2.1E-30 4.6E-35 276.5 31.3 344 110-488 2-376 (405)
10 PRK07494 2-octaprenyl-6-methox 100.0 1.4E-30 3E-35 276.2 29.1 344 110-488 7-368 (388)
11 PRK08849 2-octaprenyl-3-methyl 100.0 1.8E-30 3.8E-35 275.5 29.2 302 110-443 3-328 (384)
12 COG0644 FixC Dehydrogenases (f 100.0 1.7E-29 3.7E-34 269.1 36.2 310 109-443 2-318 (396)
13 PRK08850 2-octaprenyl-6-methox 100.0 5.8E-30 1.3E-34 273.3 32.1 309 110-443 4-336 (405)
14 PRK07333 2-octaprenyl-6-methox 100.0 5.6E-30 1.2E-34 272.6 30.5 307 110-443 1-334 (403)
15 TIGR02023 BchP-ChlP geranylger 100.0 4.5E-29 9.7E-34 265.1 36.8 340 111-496 1-360 (388)
16 PLN02463 lycopene beta cyclase 100.0 4.8E-29 1E-33 268.4 33.7 365 107-499 25-444 (447)
17 TIGR02028 ChlP geranylgeranyl 100.0 7.8E-29 1.7E-33 264.2 35.1 346 111-496 1-370 (398)
18 PRK07364 2-octaprenyl-6-methox 100.0 3E-29 6.6E-34 268.1 30.1 309 109-443 17-348 (415)
19 PRK06996 hypothetical protein; 100.0 3.6E-29 7.9E-34 266.7 26.6 311 106-443 7-339 (398)
20 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.1E-28 2.3E-33 260.5 29.8 307 112-443 1-330 (385)
21 PRK08244 hypothetical protein; 100.0 4.4E-28 9.5E-33 265.4 34.9 303 110-443 2-323 (493)
22 PRK09126 hypothetical protein; 100.0 1.1E-28 2.4E-33 261.9 27.6 311 110-443 3-334 (392)
23 PRK06834 hypothetical protein; 100.0 8.3E-28 1.8E-32 262.5 34.5 304 110-443 3-316 (488)
24 PRK10015 oxidoreductase; Provi 100.0 3.6E-28 7.9E-33 261.4 30.2 320 109-443 4-349 (429)
25 PF01494 FAD_binding_3: FAD bi 100.0 1.7E-29 3.6E-34 261.8 19.2 310 110-443 1-342 (356)
26 PLN02697 lycopene epsilon cycl 100.0 9E-27 1.9E-31 254.6 38.5 360 109-499 107-528 (529)
27 PRK07190 hypothetical protein; 100.0 3.4E-27 7.5E-32 257.4 34.8 308 109-443 4-326 (487)
28 TIGR01984 UbiH 2-polyprenyl-6- 100.0 9.5E-28 2.1E-32 253.7 29.2 306 112-443 1-327 (382)
29 PRK07045 putative monooxygenas 100.0 3.5E-27 7.6E-32 250.4 32.5 311 110-443 5-337 (388)
30 PRK07608 ubiquinone biosynthes 100.0 3.1E-27 6.8E-32 250.2 29.9 306 110-443 5-333 (388)
31 PRK10157 putative oxidoreducta 100.0 4.4E-27 9.5E-32 253.1 30.6 320 108-443 3-349 (428)
32 PRK06184 hypothetical protein; 100.0 1E-26 2.3E-31 255.1 33.6 310 110-443 3-331 (502)
33 TIGR02032 GG-red-SF geranylger 100.0 1.1E-26 2.4E-31 235.4 30.3 287 111-422 1-295 (295)
34 PRK06183 mhpA 3-(3-hydroxyphen 100.0 3.1E-26 6.7E-31 253.4 34.4 306 109-443 9-337 (538)
35 PRK08243 4-hydroxybenzoate 3-m 100.0 4E-26 8.7E-31 242.8 33.1 310 110-443 2-329 (392)
36 PRK05732 2-octaprenyl-6-methox 100.0 3.1E-26 6.7E-31 243.0 31.8 311 110-443 3-336 (395)
37 TIGR01790 carotene-cycl lycope 100.0 7.3E-26 1.6E-30 240.0 34.0 290 112-429 1-303 (388)
38 PRK11445 putative oxidoreducta 100.0 4.4E-26 9.5E-31 239.1 31.3 287 110-426 1-302 (351)
39 PRK07538 hypothetical protein; 100.0 5.1E-26 1.1E-30 243.6 31.8 361 112-504 2-405 (413)
40 PRK08294 phenol 2-monooxygenas 100.0 2.2E-25 4.8E-30 250.1 37.7 326 109-460 31-404 (634)
41 PRK06475 salicylate hydroxylas 99.9 1.6E-25 3.4E-30 238.8 31.3 308 112-443 4-339 (400)
42 PRK08132 FAD-dependent oxidore 99.9 5.2E-25 1.1E-29 244.1 35.0 309 109-443 22-350 (547)
43 PTZ00367 squalene epoxidase; P 99.9 2.3E-25 5E-30 245.9 31.8 297 110-426 33-375 (567)
44 PRK06753 hypothetical protein; 99.9 3.6E-25 7.8E-30 233.4 31.6 297 112-443 2-317 (373)
45 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 1.4E-24 3E-29 231.0 32.0 307 110-443 2-329 (390)
46 PRK07588 hypothetical protein; 99.9 5.9E-25 1.3E-29 233.5 29.0 304 112-443 2-328 (391)
47 PLN02985 squalene monooxygenas 99.9 1.1E-23 2.3E-28 231.2 37.2 312 107-443 40-380 (514)
48 PRK05868 hypothetical protein; 99.9 1.7E-24 3.7E-29 228.9 29.5 302 111-443 2-331 (372)
49 PRK08163 salicylate hydroxylas 99.9 1.9E-24 4.2E-29 229.7 30.0 308 110-443 4-335 (396)
50 PRK06126 hypothetical protein; 99.9 1.8E-24 3.8E-29 239.8 30.9 309 109-443 6-354 (545)
51 PRK07236 hypothetical protein; 99.9 8.6E-24 1.9E-28 224.4 30.1 151 110-268 6-161 (386)
52 PRK06847 hypothetical protein; 99.9 2E-23 4.3E-28 220.1 31.0 304 110-443 4-330 (375)
53 PLN02927 antheraxanthin epoxid 99.9 9E-23 1.9E-27 227.0 31.3 315 109-443 80-425 (668)
54 KOG3855 Monooxygenase involved 99.9 2.3E-24 5E-29 220.1 16.3 322 110-443 36-424 (481)
55 TIGR03219 salicylate_mono sali 99.9 1E-22 2.2E-27 218.2 27.4 314 112-443 2-352 (414)
56 PF05834 Lycopene_cycl: Lycope 99.9 5.4E-22 1.2E-26 210.0 27.6 277 112-424 1-290 (374)
57 KOG2614 Kynurenine 3-monooxyge 99.9 4.4E-21 9.6E-26 197.6 20.9 302 111-427 3-327 (420)
58 TIGR01789 lycopene_cycl lycope 99.9 1.4E-19 3E-24 191.3 27.2 272 112-422 1-285 (370)
59 PF04820 Trp_halogenase: Trypt 99.8 1.1E-19 2.5E-24 196.6 14.0 296 112-443 1-364 (454)
60 KOG1298 Squalene monooxygenase 99.8 1.3E-17 2.7E-22 169.4 24.0 294 107-424 42-362 (509)
61 PRK08255 salicylyl-CoA 5-hydro 99.8 1.1E-17 2.4E-22 192.0 23.3 295 112-443 2-318 (765)
62 PRK04176 ribulose-1,5-biphosph 99.4 4.3E-12 9.4E-17 127.6 16.6 134 110-268 25-180 (257)
63 TIGR00292 thiazole biosynthesi 99.4 7.1E-12 1.5E-16 125.8 16.4 132 110-267 21-176 (254)
64 PF01946 Thi4: Thi4 family; PD 99.3 7.6E-12 1.7E-16 120.1 10.2 131 110-266 17-170 (230)
65 COG1635 THI4 Ribulose 1,5-bisp 99.3 4.8E-11 1E-15 114.0 14.8 132 110-267 30-184 (262)
66 PF08491 SE: Squalene epoxidas 99.3 1.8E-10 3.9E-15 115.2 19.1 173 249-443 1-184 (276)
67 PF01266 DAO: FAD dependent ox 99.2 9E-10 1.9E-14 114.1 22.0 68 200-268 142-211 (358)
68 COG2081 Predicted flavoprotein 99.2 1.9E-10 4.1E-15 119.3 15.1 159 110-270 3-187 (408)
69 PRK13369 glycerol-3-phosphate 99.2 1E-08 2.2E-13 113.0 28.7 67 201-267 151-222 (502)
70 PRK12266 glpD glycerol-3-phosp 99.2 1.3E-08 2.8E-13 112.3 27.4 66 201-266 151-222 (508)
71 PF03486 HI0933_like: HI0933-l 99.1 5.5E-10 1.2E-14 119.4 13.0 157 111-270 1-186 (409)
72 TIGR01377 soxA_mon sarcosine o 99.1 3.4E-09 7.4E-14 112.0 17.9 71 200-271 140-211 (380)
73 KOG2415 Electron transfer flav 99.1 2.1E-08 4.5E-13 103.7 21.0 303 108-429 74-425 (621)
74 PRK11728 hydroxyglutarate oxid 99.0 4.8E-09 1E-13 111.9 17.1 70 200-270 144-214 (393)
75 PRK11259 solA N-methyltryptoph 99.0 8.1E-09 1.8E-13 108.9 18.0 61 201-262 145-205 (376)
76 COG0579 Predicted dehydrogenas 99.0 1.1E-08 2.5E-13 108.9 17.1 159 110-271 3-222 (429)
77 PRK05192 tRNA uridine 5-carbox 99.0 6.4E-09 1.4E-13 115.1 15.6 145 110-261 4-157 (618)
78 PRK05257 malate:quinone oxidor 99.0 1.9E-08 4E-13 110.4 17.8 71 200-270 178-256 (494)
79 TIGR01320 mal_quin_oxido malat 99.0 3.1E-08 6.7E-13 108.5 19.5 71 200-270 173-250 (483)
80 PRK12409 D-amino acid dehydrog 98.9 2.5E-08 5.4E-13 106.8 16.5 68 201-268 193-266 (410)
81 TIGR01373 soxB sarcosine oxida 98.9 1.8E-08 3.9E-13 107.8 15.3 69 201-270 179-250 (407)
82 PRK01747 mnmC bifunctional tRN 98.9 1.4E-08 3E-13 115.6 15.1 61 201-262 404-464 (662)
83 PF13738 Pyr_redox_3: Pyridine 98.9 9.9E-09 2.1E-13 98.6 10.4 134 114-262 1-139 (203)
84 PF12831 FAD_oxidored: FAD dep 98.9 9E-10 2E-14 118.9 3.0 148 112-269 1-157 (428)
85 PTZ00383 malate:quinone oxidor 98.9 1E-07 2.3E-12 104.4 18.9 70 201-271 207-284 (497)
86 PRK11101 glpA sn-glycerol-3-ph 98.8 6.6E-08 1.4E-12 107.6 16.8 69 200-268 144-219 (546)
87 TIGR03329 Phn_aa_oxid putative 98.8 5E-08 1.1E-12 106.3 14.5 61 200-262 178-238 (460)
88 PF01134 GIDA: Glucose inhibit 98.8 4.5E-08 9.7E-13 103.3 13.4 136 112-259 1-150 (392)
89 COG0578 GlpA Glycerol-3-phosph 98.8 1.4E-06 3.1E-11 94.9 24.0 70 199-268 158-233 (532)
90 TIGR01292 TRX_reduct thioredox 98.8 1.1E-07 2.3E-12 96.8 14.3 111 111-261 1-112 (300)
91 PRK13339 malate:quinone oxidor 98.8 4.6E-07 9.9E-12 99.2 19.9 71 200-270 179-257 (497)
92 PLN02464 glycerol-3-phosphate 98.8 2.1E-07 4.5E-12 105.1 17.3 68 201-268 228-304 (627)
93 PLN02661 Putative thiazole syn 98.7 2.8E-07 6E-12 96.0 15.4 130 110-265 92-248 (357)
94 KOG2820 FAD-dependent oxidored 98.7 2.3E-07 4.9E-12 94.2 13.5 150 109-260 6-211 (399)
95 TIGR00275 flavoprotein, HI0933 98.7 1.7E-07 3.7E-12 100.4 13.2 154 114-270 1-180 (400)
96 PRK00711 D-amino acid dehydrog 98.7 6.7E-07 1.4E-11 95.8 17.7 67 201-268 197-265 (416)
97 PRK15317 alkyl hydroperoxide r 98.7 3.4E-07 7.3E-12 101.4 14.9 113 108-261 209-322 (517)
98 TIGR03364 HpnW_proposed FAD de 98.7 3.4E-07 7.4E-12 96.4 14.2 58 200-262 140-198 (365)
99 PRK07804 L-aspartate oxidase; 98.7 6.5E-07 1.4E-11 99.6 17.1 59 205-263 144-212 (541)
100 PRK06481 fumarate reductase fl 98.6 6.8E-07 1.5E-11 98.7 17.1 58 205-262 190-252 (506)
101 KOG2844 Dimethylglycine dehydr 98.6 1.4E-06 3E-11 95.1 18.0 62 200-262 182-244 (856)
102 TIGR01812 sdhA_frdA_Gneg succi 98.6 7.6E-07 1.6E-11 99.6 16.2 59 205-263 129-193 (566)
103 PRK06854 adenylylsulfate reduc 98.6 1.2E-06 2.6E-11 98.7 17.0 153 110-262 11-196 (608)
104 TIGR00551 nadB L-aspartate oxi 98.6 8.4E-07 1.8E-11 97.5 15.3 60 204-263 127-191 (488)
105 PRK09231 fumarate reductase fl 98.6 1.1E-06 2.4E-11 98.5 15.8 59 205-263 133-198 (582)
106 COG0492 TrxB Thioredoxin reduc 98.6 8.6E-07 1.9E-11 91.3 13.6 112 110-262 3-116 (305)
107 TIGR03140 AhpF alkyl hydropero 98.6 9.5E-07 2.1E-11 97.8 14.9 113 108-261 210-323 (515)
108 PRK07121 hypothetical protein; 98.6 2.4E-06 5.3E-11 94.0 18.0 59 204-262 176-240 (492)
109 PRK08274 tricarballylate dehyd 98.5 2.1E-06 4.5E-11 93.8 17.2 59 204-262 130-193 (466)
110 PF00890 FAD_binding_2: FAD bi 98.5 1.8E-06 3.9E-11 92.6 15.4 64 204-267 140-210 (417)
111 TIGR01813 flavo_cyto_c flavocy 98.5 1.9E-06 4.2E-11 93.3 15.3 60 203-262 128-193 (439)
112 PRK05945 sdhA succinate dehydr 98.5 1.9E-06 4.2E-11 96.6 15.5 59 205-263 135-199 (575)
113 PRK06175 L-aspartate oxidase; 98.5 1.8E-06 4E-11 93.4 14.6 59 204-262 127-190 (433)
114 TIGR01176 fum_red_Fp fumarate 98.5 2.5E-06 5.3E-11 95.7 15.8 59 205-263 132-197 (580)
115 TIGR00136 gidA glucose-inhibit 98.5 1.7E-06 3.7E-11 96.0 14.2 141 111-261 1-154 (617)
116 PTZ00139 Succinate dehydrogena 98.5 2.6E-06 5.7E-11 96.1 15.9 58 205-262 166-230 (617)
117 PLN02172 flavin-containing mon 98.5 2.3E-06 4.9E-11 93.4 14.7 146 110-261 10-173 (461)
118 PRK06069 sdhA succinate dehydr 98.5 2.2E-06 4.8E-11 96.1 15.1 58 206-263 138-202 (577)
119 PRK09078 sdhA succinate dehydr 98.4 3.7E-06 8E-11 94.7 16.0 58 205-262 149-213 (598)
120 COG0665 DadA Glycine/D-amino a 98.4 6.6E-06 1.4E-10 87.0 15.5 68 200-268 151-220 (387)
121 TIGR03143 AhpF_homolog putativ 98.4 4.2E-06 9.1E-11 93.5 14.4 110 110-261 4-114 (555)
122 PLN00128 Succinate dehydrogena 98.4 6.4E-06 1.4E-10 93.2 15.8 58 205-262 187-251 (635)
123 PRK06452 sdhA succinate dehydr 98.4 1E-05 2.3E-10 90.5 17.3 58 205-262 136-199 (566)
124 PRK08401 L-aspartate oxidase; 98.4 6.5E-06 1.4E-10 90.0 15.2 152 111-264 2-178 (466)
125 PRK08275 putative oxidoreducta 98.4 6.9E-06 1.5E-10 91.7 15.7 59 205-263 137-202 (554)
126 PRK05335 tRNA (uracil-5-)-meth 98.4 1.8E-06 3.8E-11 92.2 10.2 113 111-232 3-126 (436)
127 PRK06263 sdhA succinate dehydr 98.4 6.2E-06 1.3E-10 91.9 15.0 58 205-262 134-198 (543)
128 PRK07573 sdhA succinate dehydr 98.3 8E-06 1.7E-10 92.6 15.9 55 208-262 173-233 (640)
129 PRK07233 hypothetical protein; 98.3 0.00057 1.2E-08 73.3 29.1 55 206-260 199-253 (434)
130 PRK08205 sdhA succinate dehydr 98.3 1.2E-05 2.6E-10 90.3 16.0 59 205-263 140-208 (583)
131 PLN02815 L-aspartate oxidase 98.3 9E-06 1.9E-10 91.3 14.8 158 104-262 23-223 (594)
132 PRK06134 putative FAD-binding 98.3 2.8E-05 6.1E-10 87.3 18.5 60 203-262 215-279 (581)
133 PTZ00363 rab-GDP dissociation 98.3 1.1E-05 2.4E-10 87.4 14.6 55 207-261 234-290 (443)
134 PRK07057 sdhA succinate dehydr 98.3 1.7E-05 3.7E-10 89.3 16.4 59 205-263 148-213 (591)
135 TIGR01424 gluta_reduc_2 glutat 98.3 6.8E-06 1.5E-10 89.3 12.5 137 110-261 2-142 (446)
136 PRK08071 L-aspartate oxidase; 98.3 1.6E-05 3.4E-10 88.0 15.3 57 205-262 130-191 (510)
137 PRK07803 sdhA succinate dehydr 98.3 1.9E-05 4.2E-10 89.4 16.2 36 110-145 8-44 (626)
138 PRK09897 hypothetical protein; 98.2 1.2E-05 2.6E-10 89.0 14.0 150 111-261 2-166 (534)
139 PRK06416 dihydrolipoamide dehy 98.2 1.7E-05 3.6E-10 86.6 14.8 137 109-261 3-146 (462)
140 PRK08958 sdhA succinate dehydr 98.2 1.9E-05 4.1E-10 88.8 15.6 59 205-263 143-208 (588)
141 PTZ00058 glutathione reductase 98.2 7.2E-06 1.6E-10 91.4 12.1 40 108-147 46-86 (561)
142 PRK12416 protoporphyrinogen ox 98.2 0.001 2.2E-08 72.6 28.7 39 220-258 239-277 (463)
143 TIGR01350 lipoamide_DH dihydro 98.2 2.4E-05 5.2E-10 85.3 15.6 59 206-264 212-272 (461)
144 PRK12842 putative succinate de 98.2 1.5E-05 3.2E-10 89.4 14.1 57 206-262 215-276 (574)
145 PRK08626 fumarate reductase fl 98.2 2.5E-05 5.5E-10 88.8 16.0 58 206-263 159-222 (657)
146 PRK06467 dihydrolipoamide dehy 98.2 6.9E-06 1.5E-10 89.9 10.8 138 109-261 3-148 (471)
147 PRK12834 putative FAD-binding 98.2 3.9E-05 8.5E-10 85.6 16.8 33 110-142 4-37 (549)
148 COG2072 TrkA Predicted flavopr 98.2 1E-05 2.2E-10 87.8 11.4 130 109-261 7-144 (443)
149 TIGR01421 gluta_reduc_1 glutat 98.2 1.9E-05 4E-10 86.1 13.3 136 110-261 2-141 (450)
150 PRK05976 dihydrolipoamide dehy 98.2 1.3E-05 2.9E-10 87.7 12.2 140 110-261 4-154 (472)
151 PRK08641 sdhA succinate dehydr 98.2 2.9E-05 6.4E-10 87.3 15.2 36 110-145 3-39 (589)
152 PRK10262 thioredoxin reductase 98.2 3.3E-05 7.2E-10 80.0 14.5 112 109-261 5-117 (321)
153 PRK05249 soluble pyridine nucl 98.2 2.1E-05 4.6E-10 85.7 13.5 139 110-261 5-149 (461)
154 PRK12845 3-ketosteroid-delta-1 98.2 4E-05 8.6E-10 85.7 15.8 58 207-264 219-281 (564)
155 KOG1399 Flavin-containing mono 98.2 1.7E-05 3.7E-10 85.7 12.3 135 110-261 6-153 (448)
156 PRK07843 3-ketosteroid-delta-1 98.2 1.3E-05 2.9E-10 89.5 12.0 56 207-262 210-270 (557)
157 PRK12839 hypothetical protein; 98.1 4.9E-05 1.1E-09 85.2 15.9 60 203-262 212-277 (572)
158 TIGR00137 gid_trmFO tRNA:m(5)U 98.1 1.6E-05 3.5E-10 85.3 11.0 133 111-268 1-146 (433)
159 PRK12835 3-ketosteroid-delta-1 98.1 6.7E-05 1.5E-09 84.3 16.2 36 110-145 11-47 (584)
160 PLN02612 phytoene desaturase 98.1 0.0018 3.9E-08 72.7 27.3 53 207-259 310-364 (567)
161 PRK06370 mercuric reductase; V 98.1 3.8E-05 8.1E-10 83.9 13.6 38 110-147 5-43 (463)
162 PRK14694 putative mercuric red 98.1 3.4E-05 7.3E-10 84.4 13.0 39 108-146 4-43 (468)
163 PRK07395 L-aspartate oxidase; 98.1 4E-05 8.7E-10 85.5 13.7 56 205-261 134-197 (553)
164 PRK06116 glutathione reductase 98.1 3.4E-05 7.3E-10 83.9 12.7 37 110-146 4-41 (450)
165 PRK09077 L-aspartate oxidase; 98.1 8.7E-05 1.9E-09 82.6 16.1 59 205-263 138-209 (536)
166 PRK07512 L-aspartate oxidase; 98.0 6E-05 1.3E-09 83.4 14.2 58 205-262 136-198 (513)
167 PLN02507 glutathione reductase 98.0 5.2E-05 1.1E-09 83.6 13.7 142 108-261 23-179 (499)
168 PF00743 FMO-like: Flavin-bind 98.0 4.9E-05 1.1E-09 84.3 13.4 137 112-261 3-150 (531)
169 TIGR02485 CobZ_N-term precorri 98.0 7.2E-05 1.6E-09 80.9 14.5 58 205-262 123-184 (432)
170 PRK12844 3-ketosteroid-delta-1 98.0 6.4E-05 1.4E-09 84.1 14.4 57 206-262 209-270 (557)
171 PRK12837 3-ketosteroid-delta-1 98.0 7.1E-05 1.5E-09 82.9 14.3 36 110-145 7-42 (513)
172 PF00070 Pyr_redox: Pyridine n 98.0 0.0001 2.3E-09 60.3 11.4 78 113-245 2-80 (80)
173 PF06039 Mqo: Malate:quinone o 98.0 0.00016 3.5E-09 77.2 15.4 71 200-270 176-254 (488)
174 PRK06327 dihydrolipoamide dehy 98.0 6.6E-05 1.4E-09 82.3 12.9 31 110-140 4-35 (475)
175 TIGR01811 sdhA_Bsu succinate d 98.0 0.0001 2.3E-09 83.1 14.7 30 113-142 1-31 (603)
176 PRK12843 putative FAD-binding 98.0 6.4E-05 1.4E-09 84.4 12.9 59 205-263 221-284 (578)
177 PTZ00306 NADH-dependent fumara 98.0 0.00016 3.5E-09 87.4 17.1 38 108-145 407-445 (1167)
178 TIGR02061 aprA adenosine phosp 98.0 0.00016 3.5E-09 81.5 15.9 57 205-261 126-191 (614)
179 KOG2853 Possible oxidoreductas 97.9 0.00016 3.5E-09 73.8 14.0 71 202-273 240-333 (509)
180 PLN02546 glutathione reductase 97.9 0.00012 2.6E-09 81.7 14.3 33 108-140 77-110 (558)
181 TIGR03452 mycothione_red mycot 97.9 4.7E-05 1E-09 83.0 10.7 37 110-147 2-38 (452)
182 PRK06115 dihydrolipoamide dehy 97.9 8.9E-05 1.9E-09 81.1 12.7 37 110-146 3-41 (466)
183 PRK07251 pyridine nucleotide-d 97.9 0.00011 2.4E-09 79.6 13.0 33 110-142 3-36 (438)
184 PRK04965 NADH:flavorubredoxin 97.9 0.00016 3.6E-09 76.7 14.0 106 111-270 142-250 (377)
185 PRK13748 putative mercuric red 97.9 0.00013 2.9E-09 81.5 13.6 37 110-146 98-135 (561)
186 COG3380 Predicted NAD/FAD-depe 97.9 7.9E-05 1.7E-09 74.0 10.1 133 111-256 2-155 (331)
187 COG1233 Phytoene dehydrogenase 97.9 1.4E-05 2.9E-10 88.0 4.9 54 206-259 225-279 (487)
188 KOG2665 Predicted FAD-dependen 97.8 0.00015 3.3E-09 73.3 11.4 72 201-272 192-269 (453)
189 COG1053 SdhA Succinate dehydro 97.8 0.00011 2.4E-09 81.7 11.6 37 110-146 6-43 (562)
190 PF13434 K_oxygenase: L-lysine 97.8 2.1E-05 4.5E-10 82.5 5.4 141 110-260 2-158 (341)
191 PRK08010 pyridine nucleotide-d 97.8 0.00026 5.6E-09 76.8 13.7 33 110-142 3-36 (441)
192 PRK07818 dihydrolipoamide dehy 97.8 0.00026 5.6E-09 77.5 13.6 38 110-147 4-42 (466)
193 PRK13800 putative oxidoreducta 97.8 0.00041 8.8E-09 81.9 15.7 35 109-143 12-47 (897)
194 PRK07845 flavoprotein disulfid 97.8 0.00024 5.3E-09 77.7 13.0 140 111-261 2-151 (466)
195 KOG0042 Glycerol-3-phosphate d 97.7 0.00017 3.7E-09 77.6 10.6 66 203-268 222-294 (680)
196 PRK11883 protoporphyrinogen ox 97.7 0.0005 1.1E-08 74.3 14.6 40 221-260 235-274 (451)
197 PRK06292 dihydrolipoamide dehy 97.7 0.00021 4.6E-09 77.8 11.8 36 110-145 3-39 (460)
198 PRK07846 mycothione reductase; 97.7 0.00021 4.5E-09 77.9 11.7 37 110-147 1-37 (451)
199 COG1231 Monoamine oxidase [Ami 97.7 0.00039 8.4E-09 74.0 13.1 47 210-256 210-257 (450)
200 PF13454 NAD_binding_9: FAD-NA 97.7 0.00048 1E-08 64.0 12.1 42 218-259 113-155 (156)
201 TIGR01372 soxA sarcosine oxida 97.7 0.0004 8.6E-09 82.8 14.1 109 109-261 162-286 (985)
202 TIGR02053 MerA mercuric reduct 97.7 0.00017 3.6E-09 78.8 10.0 36 111-146 1-37 (463)
203 PRK09754 phenylpropionate diox 97.7 0.0005 1.1E-08 73.6 13.1 102 112-268 146-250 (396)
204 COG3634 AhpF Alkyl hydroperoxi 97.6 8E-05 1.7E-09 76.1 6.1 110 110-260 211-324 (520)
205 PF07992 Pyr_redox_2: Pyridine 97.6 3.2E-05 7E-10 73.8 2.9 113 112-261 1-122 (201)
206 COG0445 GidA Flavin-dependent 97.6 0.00013 2.8E-09 78.9 7.0 139 110-260 4-157 (621)
207 TIGR01423 trypano_reduc trypan 97.6 0.00058 1.3E-08 75.1 12.0 33 109-141 2-36 (486)
208 PRK05249 soluble pyridine nucl 97.6 0.0011 2.4E-08 72.3 14.1 98 112-264 177-275 (461)
209 TIGR02730 carot_isom carotene 97.6 7.2E-05 1.6E-09 82.4 4.9 63 205-267 229-292 (493)
210 PRK14727 putative mercuric red 97.5 0.00074 1.6E-08 74.2 12.5 37 109-145 15-53 (479)
211 TIGR01438 TGR thioredoxin and 97.5 0.001 2.3E-08 73.1 13.1 32 110-141 2-34 (484)
212 PTZ00052 thioredoxin reductase 97.5 0.001 2.3E-08 73.4 12.9 32 110-141 5-37 (499)
213 PF13450 NAD_binding_8: NAD(P) 97.5 0.00014 3.1E-09 57.9 4.4 31 115-145 1-32 (68)
214 COG1249 Lpd Pyruvate/2-oxoglut 97.5 0.00072 1.6E-08 73.4 11.3 39 109-147 3-43 (454)
215 PTZ00153 lipoamide dehydrogena 97.5 0.0007 1.5E-08 76.9 11.6 38 109-146 115-155 (659)
216 PRK12779 putative bifunctional 97.4 0.00035 7.7E-09 82.5 9.0 98 110-261 306-404 (944)
217 PLN02568 polyamine oxidase 97.4 0.0027 5.9E-08 70.7 15.2 50 207-258 244-293 (539)
218 PRK06912 acoL dihydrolipoamide 97.4 0.0016 3.4E-08 71.1 13.0 35 112-146 2-37 (458)
219 COG0029 NadB Aspartate oxidase 97.4 0.0009 2E-08 71.8 10.6 147 112-264 9-199 (518)
220 PRK06416 dihydrolipoamide dehy 97.3 0.0026 5.7E-08 69.3 13.7 97 112-263 174-274 (462)
221 PRK12831 putative oxidoreducta 97.3 0.00054 1.2E-08 75.0 7.9 36 110-145 140-176 (464)
222 KOG2311 NAD/FAD-utilizing prot 97.3 0.00086 1.9E-08 71.3 8.7 137 109-260 27-185 (679)
223 PRK06116 glutathione reductase 97.3 0.0027 5.8E-08 69.1 13.0 98 112-264 169-268 (450)
224 PF00732 GMC_oxred_N: GMC oxid 97.3 0.00021 4.6E-09 72.9 4.0 33 111-143 1-35 (296)
225 TIGR02733 desat_CrtD C-3',4' d 97.2 0.00027 6E-09 77.7 4.8 55 206-260 233-293 (492)
226 PRK07845 flavoprotein disulfid 97.2 0.0044 9.6E-08 67.8 13.5 98 112-264 179-277 (466)
227 PRK09564 coenzyme A disulfide 97.2 0.0026 5.6E-08 68.9 11.6 108 112-261 2-115 (444)
228 TIGR03169 Nterm_to_SelD pyridi 97.2 0.002 4.3E-08 67.9 10.2 46 213-261 62-107 (364)
229 TIGR01424 gluta_reduc_2 glutat 97.2 0.0047 1E-07 67.2 13.3 97 112-263 168-265 (446)
230 PLN02507 glutathione reductase 97.2 0.006 1.3E-07 67.4 14.1 98 112-264 205-303 (499)
231 TIGR02352 thiamin_ThiO glycine 97.1 0.032 6.9E-07 57.6 18.3 63 200-263 132-195 (337)
232 TIGR01421 gluta_reduc_1 glutat 97.1 0.0058 1.3E-07 66.6 13.1 98 112-264 168-268 (450)
233 PRK07818 dihydrolipoamide dehy 97.1 0.0063 1.4E-07 66.5 13.3 98 112-264 174-276 (466)
234 TIGR02734 crtI_fam phytoene de 97.1 0.00045 9.8E-09 76.1 4.2 63 205-267 219-282 (502)
235 PRK07251 pyridine nucleotide-d 97.1 0.0079 1.7E-07 65.2 13.8 96 112-263 159-255 (438)
236 PRK12778 putative bifunctional 97.1 0.0011 2.4E-08 76.8 7.5 35 110-144 431-466 (752)
237 TIGR02374 nitri_red_nirB nitri 97.1 0.0051 1.1E-07 71.7 12.9 104 112-269 142-248 (785)
238 PTZ00318 NADH dehydrogenase-li 97.0 0.0039 8.4E-08 67.4 11.0 107 110-261 10-125 (424)
239 PRK06912 acoL dihydrolipoamide 97.0 0.0079 1.7E-07 65.7 13.5 97 112-263 172-270 (458)
240 PRK06115 dihydrolipoamide dehy 97.0 0.0095 2.1E-07 65.2 13.7 97 112-263 176-278 (466)
241 PRK06370 mercuric reductase; V 97.0 0.0098 2.1E-07 65.0 13.8 97 112-263 173-273 (463)
242 PRK09754 phenylpropionate diox 97.0 0.0036 7.8E-08 66.9 10.1 106 111-261 4-112 (396)
243 PRK09853 putative selenate red 97.0 0.0039 8.5E-08 73.4 10.9 36 110-145 539-575 (1019)
244 PRK06327 dihydrolipoamide dehy 97.0 0.01 2.3E-07 65.1 13.6 98 112-264 185-287 (475)
245 TIGR03862 flavo_PP4765 unchara 97.0 0.0067 1.4E-07 64.4 11.5 69 201-271 82-162 (376)
246 PRK07846 mycothione reductase; 96.9 0.011 2.5E-07 64.4 13.5 98 111-264 167-265 (451)
247 COG1249 Lpd Pyruvate/2-oxoglut 96.9 0.01 2.2E-07 64.5 13.0 98 112-264 175-275 (454)
248 TIGR00031 UDP-GALP_mutase UDP- 96.9 0.00099 2.2E-08 70.8 5.0 36 110-145 1-37 (377)
249 PRK02106 choline dehydrogenase 96.9 0.00098 2.1E-08 74.7 5.2 34 109-142 4-39 (560)
250 PTZ00052 thioredoxin reductase 96.9 0.01 2.2E-07 65.7 13.1 97 112-264 184-281 (499)
251 KOG1335 Dihydrolipoamide dehyd 96.9 0.0042 9.2E-08 64.7 9.3 131 109-260 38-184 (506)
252 TIGR03385 CoA_CoA_reduc CoA-di 96.9 0.0098 2.1E-07 64.2 12.7 102 112-269 139-243 (427)
253 TIGR02053 MerA mercuric reduct 96.9 0.011 2.4E-07 64.6 13.1 99 111-264 167-269 (463)
254 PRK14989 nitrite reductase sub 96.9 0.0089 1.9E-07 70.1 13.1 104 112-269 147-255 (847)
255 PRK09564 coenzyme A disulfide 96.9 0.019 4.1E-07 62.2 14.8 103 112-269 151-256 (444)
256 PRK05976 dihydrolipoamide dehy 96.9 0.013 2.8E-07 64.2 13.5 97 112-263 182-283 (472)
257 PLN02576 protoporphyrinogen ox 96.9 0.0012 2.6E-08 72.6 5.3 38 108-145 10-49 (496)
258 PRK12775 putative trifunctiona 96.9 0.0019 4.2E-08 76.9 7.3 36 110-145 430-466 (1006)
259 PRK13977 myosin-cross-reactive 96.9 0.027 5.8E-07 62.7 15.6 56 205-260 226-292 (576)
260 PRK08010 pyridine nucleotide-d 96.8 0.017 3.7E-07 62.7 13.8 96 112-263 160-256 (441)
261 PRK11749 dihydropyrimidine deh 96.8 0.0036 7.8E-08 68.3 8.5 35 110-144 140-175 (457)
262 COG0446 HcaD Uncharacterized N 96.8 0.011 2.5E-07 62.4 12.0 103 111-267 137-245 (415)
263 TIGR02462 pyranose_ox pyranose 96.8 0.0014 3E-08 72.8 4.9 35 111-145 1-36 (544)
264 PRK14727 putative mercuric red 96.8 0.015 3.3E-07 63.9 13.0 96 112-264 190-286 (479)
265 PRK07208 hypothetical protein; 96.7 0.0015 3.3E-08 71.4 5.0 56 206-261 219-280 (479)
266 TIGR01423 trypano_reduc trypan 96.7 0.017 3.7E-07 63.6 12.8 58 207-264 233-291 (486)
267 COG2509 Uncharacterized FAD-de 96.7 0.036 7.9E-07 59.2 14.4 57 206-262 174-231 (486)
268 COG0562 Glf UDP-galactopyranos 96.7 0.002 4.2E-08 65.8 4.7 36 110-145 1-37 (374)
269 TIGR01438 TGR thioredoxin and 96.7 0.019 4E-07 63.3 12.8 96 112-263 182-281 (484)
270 PRK13748 putative mercuric red 96.6 0.021 4.5E-07 63.9 13.2 95 112-263 272-367 (561)
271 COG3486 IucD Lysine/ornithine 96.6 0.0058 1.3E-07 64.3 7.9 144 109-263 4-159 (436)
272 TIGR02374 nitri_red_nirB nitri 96.6 0.0088 1.9E-07 69.8 10.3 44 216-261 65-108 (785)
273 PRK13512 coenzyme A disulfide 96.6 0.015 3.3E-07 63.0 11.5 109 112-261 3-117 (438)
274 PRK14694 putative mercuric red 96.6 0.027 5.9E-07 61.6 13.5 96 112-264 180-276 (468)
275 TIGR03452 mycothione_red mycot 96.6 0.028 6.2E-07 61.3 13.6 96 112-263 171-267 (452)
276 TIGR00562 proto_IX_ox protopor 96.6 0.0024 5.2E-08 69.4 4.8 41 220-260 238-278 (462)
277 PRK06467 dihydrolipoamide dehy 96.5 0.025 5.5E-07 62.0 12.7 97 112-264 176-277 (471)
278 PRK04965 NADH:flavorubredoxin 96.5 0.023 5E-07 60.3 12.1 105 111-261 3-111 (377)
279 PRK05329 anaerobic glycerol-3- 96.5 0.0026 5.7E-08 68.6 4.8 55 206-260 260-317 (422)
280 PRK13512 coenzyme A disulfide 96.5 0.023 5E-07 61.7 11.8 99 112-269 150-251 (438)
281 COG2303 BetA Choline dehydroge 96.4 0.0026 5.6E-08 71.0 4.3 35 108-142 5-40 (542)
282 COG3075 GlpB Anaerobic glycero 96.4 0.0035 7.6E-08 64.1 4.4 33 110-142 2-35 (421)
283 PRK12770 putative glutamate sy 96.4 0.015 3.3E-07 61.1 9.5 36 110-145 18-54 (352)
284 TIGR03378 glycerol3P_GlpB glyc 96.4 0.0046 1E-07 66.4 5.4 63 205-267 263-330 (419)
285 KOG0029 Amine oxidase [Seconda 96.4 0.0041 8.8E-08 68.5 5.0 35 110-144 15-50 (501)
286 PTZ00318 NADH dehydrogenase-li 96.3 0.035 7.6E-07 60.0 12.2 51 207-261 230-280 (424)
287 PLN02268 probable polyamine ox 96.3 0.0046 1E-07 66.8 4.9 40 218-257 209-248 (435)
288 PRK14989 nitrite reductase sub 96.3 0.024 5.3E-07 66.5 11.0 104 112-261 5-113 (847)
289 TIGR03197 MnmC_Cterm tRNA U-34 96.3 0.011 2.3E-07 62.8 7.5 62 200-262 130-191 (381)
290 PTZ00058 glutathione reductase 96.2 0.051 1.1E-06 61.0 13.0 98 112-264 239-339 (561)
291 TIGR03315 Se_ygfK putative sel 96.2 0.0054 1.2E-07 72.5 5.5 36 110-145 537-573 (1012)
292 COG3573 Predicted oxidoreducta 96.2 0.005 1.1E-07 63.0 4.3 34 110-143 5-39 (552)
293 KOG1238 Glucose dehydrogenase/ 96.2 0.0054 1.2E-07 68.0 4.9 38 107-144 54-93 (623)
294 TIGR02731 phytoene_desat phyto 96.2 0.0052 1.1E-07 66.8 4.7 55 207-261 215-276 (453)
295 TIGR01316 gltA glutamate synth 96.1 0.024 5.1E-07 61.9 9.5 36 110-145 133-169 (449)
296 PLN02676 polyamine oxidase 96.1 0.0067 1.4E-07 66.8 5.1 41 220-260 245-285 (487)
297 PLN02785 Protein HOTHEAD 96.1 0.0059 1.3E-07 68.7 4.7 35 108-143 53-88 (587)
298 TIGR01810 betA choline dehydro 96.1 0.005 1.1E-07 68.6 4.0 32 112-143 1-34 (532)
299 COG1148 HdrA Heterodisulfide r 96.0 0.0068 1.5E-07 64.9 4.6 35 111-145 125-160 (622)
300 COG3349 Uncharacterized conser 96.0 0.0066 1.4E-07 65.8 4.5 35 112-146 2-37 (485)
301 PRK06292 dihydrolipoamide dehy 96.0 0.089 1.9E-06 57.3 13.4 97 112-264 171-271 (460)
302 PRK12769 putative oxidoreducta 96.0 0.012 2.6E-07 67.2 6.6 36 110-145 327-363 (654)
303 KOG2852 Possible oxidoreductas 96.0 0.03 6.6E-07 56.5 8.4 62 200-262 142-209 (380)
304 KOG0404 Thioredoxin reductase 95.9 0.048 1E-06 53.2 9.4 115 110-260 8-123 (322)
305 PRK12810 gltD glutamate syntha 95.9 0.019 4.2E-07 62.9 7.6 36 110-145 143-179 (471)
306 TIGR01318 gltD_gamma_fam gluta 95.8 0.019 4.2E-07 62.9 7.1 36 110-145 141-177 (467)
307 PLN02546 glutathione reductase 95.8 0.11 2.4E-06 58.2 13.0 98 112-264 254-353 (558)
308 TIGR02732 zeta_caro_desat caro 95.7 0.01 2.3E-07 65.1 4.6 54 207-260 221-283 (474)
309 PF00996 GDI: GDP dissociation 95.7 0.013 2.9E-07 63.2 5.3 52 206-257 233-285 (438)
310 KOG0405 Pyridine nucleotide-di 95.7 0.12 2.5E-06 53.6 11.5 134 107-262 17-166 (478)
311 COG4529 Uncharacterized protei 95.7 0.053 1.2E-06 58.5 9.5 46 221-266 122-169 (474)
312 PLN02852 ferredoxin-NADP+ redu 95.6 0.019 4.2E-07 63.1 6.2 36 110-145 26-64 (491)
313 PTZ00153 lipoamide dehydrogena 95.6 0.14 3.1E-06 58.4 13.2 97 112-263 314-429 (659)
314 PLN02328 lysine-specific histo 95.5 0.016 3.5E-07 67.1 5.2 37 109-145 237-274 (808)
315 PRK12814 putative NADPH-depend 95.5 0.033 7.1E-07 63.7 7.7 36 110-145 193-229 (652)
316 COG1206 Gid NAD(FAD)-utilizing 95.5 0.034 7.3E-07 57.1 6.7 108 112-231 5-126 (439)
317 PRK12809 putative oxidoreducta 95.5 0.025 5.5E-07 64.4 6.6 36 110-145 310-346 (639)
318 PRK10262 thioredoxin reductase 95.4 0.14 3E-06 52.9 11.5 93 112-261 148-248 (321)
319 KOG4716 Thioredoxin reductase 95.4 0.018 4E-07 59.1 4.6 33 108-140 17-50 (503)
320 KOG4254 Phytoene desaturase [C 95.3 0.013 2.8E-07 62.3 3.3 61 207-267 266-327 (561)
321 PRK12771 putative glutamate sy 95.3 0.036 7.8E-07 62.2 7.1 36 110-145 137-173 (564)
322 COG1252 Ndh NADH dehydrogenase 95.3 0.078 1.7E-06 56.7 9.1 59 205-267 209-269 (405)
323 KOG3851 Sulfide:quinone oxidor 95.2 0.057 1.2E-06 55.3 7.4 111 107-265 36-149 (446)
324 PLN02529 lysine-specific histo 95.2 0.024 5.3E-07 65.2 5.4 38 219-257 366-403 (738)
325 PRK05675 sdhA succinate dehydr 95.1 0.26 5.6E-06 55.5 13.1 59 205-263 126-191 (570)
326 KOG2960 Protein involved in th 95.1 0.03 6.4E-07 54.1 4.6 36 110-145 76-114 (328)
327 TIGR01292 TRX_reduct thioredox 95.1 0.22 4.9E-06 50.2 11.5 90 111-261 142-238 (300)
328 COG1232 HemY Protoporphyrinoge 95.0 0.043 9.3E-07 59.4 6.2 58 207-268 217-274 (444)
329 TIGR03140 AhpF alkyl hydropero 94.9 0.23 5.1E-06 55.1 12.0 89 112-261 354-450 (515)
330 PLN02487 zeta-carotene desatur 94.8 0.031 6.7E-07 62.7 4.8 54 207-260 297-359 (569)
331 PRK13984 putative oxidoreducta 94.8 0.068 1.5E-06 60.5 7.6 36 110-145 283-319 (604)
332 KOG2404 Fumarate reductase, fl 94.7 0.28 6E-06 50.5 10.7 56 207-262 145-207 (477)
333 TIGR03378 glycerol3P_GlpB glyc 94.7 0.15 3.3E-06 54.9 9.3 25 387-412 382-406 (419)
334 PRK06567 putative bifunctional 94.6 0.04 8.7E-07 64.6 5.2 32 110-141 383-415 (1028)
335 COG1252 Ndh NADH dehydrogenase 94.4 0.18 3.9E-06 54.0 9.2 104 111-261 4-111 (405)
336 TIGR03377 glycerol3P_GlpA glyc 94.4 0.2 4.4E-06 55.5 10.1 70 200-269 123-199 (516)
337 KOG1336 Monodehydroascorbate/f 94.4 0.33 7.1E-06 52.4 10.8 96 113-262 216-314 (478)
338 COG0493 GltD NADPH-dependent g 94.4 0.061 1.3E-06 58.7 5.6 54 111-164 124-187 (457)
339 TIGR01317 GOGAT_sm_gam glutama 93.8 0.084 1.8E-06 58.2 5.4 35 110-144 143-178 (485)
340 TIGR03169 Nterm_to_SelD pyridi 93.8 0.63 1.4E-05 48.9 11.8 51 208-262 194-244 (364)
341 PLN02976 amine oxidase 93.8 0.077 1.7E-06 64.4 5.2 38 107-144 690-728 (1713)
342 PLN03000 amine oxidase 93.7 0.077 1.7E-06 61.8 4.9 36 110-145 184-220 (881)
343 TIGR01316 gltA glutamate synth 93.4 0.8 1.7E-05 49.9 12.1 31 112-142 274-305 (449)
344 PRK11749 dihydropyrimidine deh 93.3 0.77 1.7E-05 50.1 11.8 31 112-142 275-307 (457)
345 PTZ00188 adrenodoxin reductase 93.2 0.13 2.8E-06 56.4 5.4 36 110-145 39-76 (506)
346 PRK12810 gltD glutamate syntha 93.1 0.73 1.6E-05 50.5 11.2 31 112-142 283-315 (471)
347 PRK05329 anaerobic glycerol-3- 93.0 0.8 1.7E-05 49.6 11.1 34 110-143 216-254 (422)
348 COG1251 NirB NAD(P)H-nitrite r 92.9 0.22 4.7E-06 56.4 6.7 104 113-270 148-254 (793)
349 PRK15317 alkyl hydroperoxide r 92.7 0.97 2.1E-05 50.2 11.6 89 112-261 353-449 (517)
350 PF13434 K_oxygenase: L-lysine 92.6 0.46 9.9E-06 50.0 8.5 129 110-259 190-339 (341)
351 COG2907 Predicted NAD/FAD-bind 91.9 1.8 3.9E-05 45.2 11.3 41 219-259 231-271 (447)
352 PRK12770 putative glutamate sy 91.9 1.3 2.7E-05 46.6 10.8 31 112-142 174-206 (352)
353 COG5044 MRS6 RAB proteins gera 91.9 0.23 4.9E-06 51.9 4.9 36 110-145 6-42 (434)
354 PRK12831 putative oxidoreducta 91.8 1.7 3.8E-05 47.6 12.1 31 112-142 283-314 (464)
355 KOG1276 Protoporphyrinogen oxi 91.6 0.17 3.8E-06 53.8 3.8 34 110-143 11-47 (491)
356 TIGR01372 soxA sarcosine oxida 91.5 1.1 2.4E-05 53.8 11.0 95 112-269 319-421 (985)
357 PF02558 ApbA: Ketopantoate re 91.5 0.28 6E-06 44.7 4.7 30 113-142 1-31 (151)
358 KOG4405 GDP dissociation inhib 91.5 0.23 5E-06 52.5 4.5 38 109-146 7-45 (547)
359 TIGR02730 carot_isom carotene 91.4 0.73 1.6E-05 50.8 8.8 35 111-145 1-36 (493)
360 COG1087 GalE UDP-glucose 4-epi 91.0 0.5 1.1E-05 48.3 6.2 30 113-142 3-34 (329)
361 PF01210 NAD_Gly3P_dh_N: NAD-d 90.9 0.29 6.2E-06 45.4 4.2 30 113-142 2-32 (157)
362 TIGR02734 crtI_fam phytoene de 90.8 1 2.2E-05 49.6 9.3 33 113-145 1-34 (502)
363 TIGR00562 proto_IX_ox protopor 90.7 21 0.00046 38.6 19.2 57 110-166 2-79 (462)
364 PF02737 3HCDH_N: 3-hydroxyacy 90.6 0.32 7E-06 46.2 4.3 30 113-142 2-32 (180)
365 PRK02705 murD UDP-N-acetylmura 89.6 0.42 9E-06 52.1 4.8 33 113-145 3-36 (459)
366 TIGR02354 thiF_fam2 thiamine b 89.3 0.51 1.1E-05 45.7 4.6 32 111-142 22-55 (200)
367 KOG1335 Dihydrolipoamide dehyd 88.9 2.5 5.3E-05 44.8 9.4 102 112-269 213-321 (506)
368 COG1179 Dinucleotide-utilizing 88.8 0.75 1.6E-05 45.6 5.3 50 111-164 31-82 (263)
369 PRK12778 putative bifunctional 88.4 3.6 7.7E-05 48.0 11.6 31 112-142 572-604 (752)
370 TIGR02356 adenyl_thiF thiazole 88.4 0.61 1.3E-05 45.2 4.5 33 111-143 22-56 (202)
371 PRK05708 2-dehydropantoate 2-r 88.0 0.57 1.2E-05 48.4 4.2 31 112-142 4-35 (305)
372 KOG1439 RAB proteins geranylge 88.0 0.25 5.5E-06 52.1 1.5 36 110-145 4-40 (440)
373 KOG1346 Programmed cell death 87.9 0.57 1.2E-05 49.7 4.1 67 202-268 390-458 (659)
374 PRK13230 nitrogenase reductase 87.9 0.46 1E-05 48.2 3.5 31 113-143 4-40 (279)
375 TIGR01350 lipoamide_DH dihydro 87.5 0.85 1.8E-05 49.6 5.5 33 111-143 171-204 (461)
376 cd01483 E1_enzyme_family Super 87.0 1 2.2E-05 40.8 4.8 31 113-143 2-34 (143)
377 PRK12814 putative NADPH-depend 86.9 5.6 0.00012 45.6 11.8 31 112-142 325-357 (652)
378 PRK12475 thiamine/molybdopteri 86.9 0.81 1.8E-05 48.0 4.6 33 111-143 25-59 (338)
379 PF03721 UDPG_MGDP_dh_N: UDP-g 86.7 0.68 1.5E-05 44.3 3.7 30 113-142 3-33 (185)
380 PRK07688 thiamine/molybdopteri 86.7 0.82 1.8E-05 48.0 4.6 32 111-142 25-58 (339)
381 PRK06249 2-dehydropantoate 2-r 86.6 0.96 2.1E-05 46.8 5.0 32 111-142 6-38 (313)
382 PRK06129 3-hydroxyacyl-CoA deh 86.5 0.77 1.7E-05 47.4 4.2 31 112-142 4-35 (308)
383 PF01593 Amino_oxidase: Flavin 86.5 1.3 2.9E-05 46.3 6.2 51 210-260 214-264 (450)
384 COG1233 Phytoene dehydrogenase 86.2 1.9 4E-05 47.6 7.3 36 110-145 3-39 (487)
385 PRK13232 nifH nitrogenase redu 86.1 0.63 1.4E-05 47.1 3.2 32 113-144 4-41 (273)
386 KOG2018 Predicted dinucleotide 86.0 1.9 4.2E-05 44.1 6.5 110 113-228 77-199 (430)
387 cd01487 E1_ThiF_like E1_ThiF_l 85.7 1.1 2.4E-05 42.4 4.4 31 113-143 2-34 (174)
388 PRK07819 3-hydroxybutyryl-CoA 85.7 0.9 1.9E-05 46.5 4.2 32 112-143 7-39 (286)
389 PF00899 ThiF: ThiF family; I 85.5 1.1 2.3E-05 40.3 4.1 33 111-143 3-37 (135)
390 COG0569 TrkA K+ transport syst 85.5 0.95 2.1E-05 44.7 4.1 56 112-167 2-66 (225)
391 PRK01438 murD UDP-N-acetylmura 85.4 1 2.2E-05 49.5 4.7 31 112-142 18-49 (480)
392 PRK06522 2-dehydropantoate 2-r 85.4 1 2.2E-05 46.0 4.4 30 113-142 3-33 (304)
393 TIGR03467 HpnE squalene-associ 85.4 2.1 4.6E-05 45.3 7.1 55 206-260 198-253 (419)
394 PRK15116 sulfur acceptor prote 85.3 1.1 2.3E-05 45.6 4.4 33 111-143 31-65 (268)
395 PLN02676 polyamine oxidase 85.2 2.2 4.7E-05 47.1 7.2 35 110-144 26-62 (487)
396 PRK07066 3-hydroxybutyryl-CoA 84.9 1.1 2.3E-05 46.8 4.3 31 112-142 9-40 (321)
397 PRK08223 hypothetical protein; 84.8 1 2.2E-05 46.1 4.0 33 111-143 28-62 (287)
398 PF01488 Shikimate_DH: Shikima 84.8 1.4 3.1E-05 39.7 4.6 32 111-142 13-46 (135)
399 PRK12921 2-dehydropantoate 2-r 84.6 1.1 2.4E-05 45.8 4.3 28 113-140 3-31 (305)
400 PRK08293 3-hydroxybutyryl-CoA 84.4 1.2 2.5E-05 45.5 4.3 31 112-142 5-36 (287)
401 TIGR01287 nifH nitrogenase iro 84.3 0.89 1.9E-05 45.9 3.4 32 113-144 3-40 (275)
402 PRK09260 3-hydroxybutyryl-CoA 84.0 1.2 2.5E-05 45.6 4.1 31 112-142 3-34 (288)
403 PRK13235 nifH nitrogenase redu 84.0 0.97 2.1E-05 45.7 3.5 32 113-144 4-41 (274)
404 PRK07530 3-hydroxybutyryl-CoA 83.6 1.3 2.8E-05 45.3 4.2 31 112-142 6-37 (292)
405 TIGR02355 moeB molybdopterin s 83.5 1.6 3.4E-05 43.6 4.7 33 111-143 25-59 (240)
406 cd02032 Bchl_like This family 83.3 0.99 2.1E-05 45.4 3.2 31 113-143 3-39 (267)
407 PRK06035 3-hydroxyacyl-CoA deh 83.3 1.3 2.9E-05 45.2 4.2 31 112-142 5-36 (291)
408 TIGR01281 DPOR_bchL light-inde 83.1 1.1 2.3E-05 45.1 3.3 31 113-143 3-39 (268)
409 PF01593 Amino_oxidase: Flavin 83.0 1.2 2.5E-05 46.7 3.8 26 120-145 2-27 (450)
410 cd02040 NifH NifH gene encodes 83.0 1 2.3E-05 45.0 3.2 31 113-143 4-40 (270)
411 KOG1800 Ferredoxin/adrenodoxin 82.9 1.7 3.6E-05 45.9 4.6 35 111-145 21-58 (468)
412 KOG0399 Glutamate synthase [Am 82.8 1.5 3.2E-05 52.0 4.5 35 111-145 1786-1821(2142)
413 PF02254 TrkA_N: TrkA-N domain 82.8 1.8 3.9E-05 37.3 4.2 30 113-142 1-31 (116)
414 PRK08328 hypothetical protein; 82.6 1.9 4.1E-05 42.7 4.8 33 111-143 28-62 (231)
415 PRK08644 thiamine biosynthesis 82.5 1.7 3.8E-05 42.4 4.5 32 111-142 29-62 (212)
416 cd02117 NifH_like This family 82.4 1.3 2.7E-05 43.1 3.4 31 113-143 3-39 (212)
417 PRK12769 putative oxidoreducta 82.2 13 0.00028 42.6 12.1 31 112-142 470-502 (654)
418 TIGR03736 PRTRC_ThiF PRTRC sys 81.9 1.8 4E-05 43.2 4.4 33 110-142 11-55 (244)
419 TIGR01318 gltD_gamma_fam gluta 81.6 15 0.00032 40.4 11.8 32 111-142 283-316 (467)
420 PRK06718 precorrin-2 dehydroge 81.6 2 4.3E-05 41.7 4.5 31 111-141 11-42 (202)
421 PRK08229 2-dehydropantoate 2-r 81.6 1.7 3.6E-05 45.3 4.3 30 112-141 4-34 (341)
422 PRK04148 hypothetical protein; 81.4 1.4 3.1E-05 39.9 3.1 31 112-142 19-49 (134)
423 KOG2336 Molybdopterin biosynth 81.2 2.8 6.2E-05 42.2 5.3 32 110-141 82-115 (422)
424 PRK13234 nifH nitrogenase redu 81.1 1.4 3.1E-05 45.2 3.4 30 114-143 8-43 (295)
425 PRK13236 nitrogenase reductase 80.8 1.4 3E-05 45.3 3.2 32 113-144 9-46 (296)
426 PRK13185 chlL protochlorophyll 80.8 1.4 3E-05 44.3 3.2 31 113-143 5-41 (270)
427 cd00755 YgdL_like Family of ac 80.7 2.1 4.6E-05 42.4 4.4 33 111-143 12-46 (231)
428 PRK12549 shikimate 5-dehydroge 80.7 2.2 4.8E-05 43.7 4.6 32 111-142 128-161 (284)
429 PRK06719 precorrin-2 dehydroge 80.7 2.3 5.1E-05 39.5 4.4 29 111-139 14-43 (157)
430 PRK05808 3-hydroxybutyryl-CoA 80.7 1.8 4E-05 43.9 4.1 31 112-142 5-36 (282)
431 PRK14106 murD UDP-N-acetylmura 80.6 2 4.4E-05 46.5 4.7 32 111-142 6-38 (450)
432 CHL00072 chlL photochlorophyll 80.6 1.5 3.2E-05 45.1 3.3 31 113-143 3-39 (290)
433 cd00757 ThiF_MoeB_HesA_family 80.2 2.5 5.4E-05 41.7 4.7 32 111-142 22-55 (228)
434 PLN02918 pyridoxine (pyridoxam 79.8 1.7 3.6E-05 48.4 3.6 117 10-139 28-169 (544)
435 PRK05690 molybdopterin biosynt 79.8 2.5 5.4E-05 42.2 4.6 33 110-142 32-66 (245)
436 TIGR03325 BphB_TodD cis-2,3-di 79.4 2.4 5.1E-05 42.1 4.4 31 112-142 7-39 (262)
437 PRK06130 3-hydroxybutyryl-CoA 79.3 2.3 5E-05 43.8 4.3 31 112-142 6-37 (311)
438 cd01075 NAD_bind_Leu_Phe_Val_D 79.2 2.9 6.2E-05 40.5 4.7 30 112-141 30-60 (200)
439 PLN02268 probable polyamine ox 79.1 4.9 0.00011 43.3 7.0 33 112-144 2-35 (435)
440 PRK08177 short chain dehydroge 79.0 2.7 5.9E-05 40.6 4.5 30 113-142 4-35 (225)
441 PRK12548 shikimate 5-dehydroge 78.9 2.6 5.7E-05 43.2 4.5 31 112-142 128-160 (289)
442 PRK06153 hypothetical protein; 78.8 2.2 4.8E-05 45.4 4.0 33 111-143 177-211 (393)
443 TIGR02731 phytoene_desat phyto 78.6 6.1 0.00013 42.8 7.6 55 112-166 1-73 (453)
444 TIGR02733 desat_CrtD C-3',4' d 78.6 7.2 0.00016 42.9 8.2 35 111-145 2-37 (492)
445 PRK00094 gpsA NAD(P)H-dependen 78.4 2.4 5.3E-05 43.6 4.2 31 112-142 3-34 (325)
446 PRK07417 arogenate dehydrogena 78.4 2.4 5.2E-05 43.1 4.1 31 112-142 2-33 (279)
447 PRK11064 wecC UDP-N-acetyl-D-m 78.4 2.3 5.1E-05 45.9 4.2 31 112-142 5-36 (415)
448 PRK07890 short chain dehydroge 78.1 2.6 5.7E-05 41.4 4.2 31 112-142 7-39 (258)
449 PLN02780 ketoreductase/ oxidor 78.0 2.4 5.2E-05 44.0 4.0 30 113-142 56-87 (320)
450 PRK08303 short chain dehydroge 78.0 2.8 6.1E-05 43.1 4.5 32 112-143 10-43 (305)
451 PRK07067 sorbitol dehydrogenas 78.0 2.8 6.1E-05 41.4 4.4 31 112-142 8-40 (257)
452 PRK08340 glucose-1-dehydrogena 77.8 2.8 6E-05 41.6 4.3 30 113-142 3-34 (259)
453 PRK06101 short chain dehydroge 77.8 3 6.5E-05 40.8 4.5 29 113-141 4-34 (240)
454 PRK08339 short chain dehydroge 77.7 3 6.4E-05 41.7 4.5 30 113-142 11-42 (263)
455 PRK14620 NAD(P)H-dependent gly 77.6 2.6 5.6E-05 43.7 4.1 31 112-142 2-33 (326)
456 PRK14618 NAD(P)H-dependent gly 77.5 2.7 5.8E-05 43.7 4.2 31 112-142 6-37 (328)
457 PRK06171 sorbitol-6-phosphate 77.3 3.2 6.9E-05 41.2 4.5 31 113-143 12-44 (266)
458 TIGR01470 cysG_Nterm siroheme 77.2 3.4 7.5E-05 40.1 4.6 30 112-141 11-41 (205)
459 PRK08862 short chain dehydroge 77.2 3.2 6.9E-05 40.7 4.4 31 112-142 7-39 (227)
460 PLN02545 3-hydroxybutyryl-CoA 77.2 2.8 6.1E-05 42.8 4.2 31 112-142 6-37 (295)
461 PRK06057 short chain dehydroge 77.2 3.1 6.6E-05 41.1 4.4 31 112-142 9-41 (255)
462 PF00670 AdoHcyase_NAD: S-aden 77.1 3.2 6.9E-05 38.8 4.1 31 112-142 25-56 (162)
463 PRK07878 molybdopterin biosynt 77.0 2.9 6.3E-05 44.8 4.4 33 111-143 43-77 (392)
464 PRK11199 tyrA bifunctional cho 76.9 3.7 8.1E-05 43.7 5.2 31 111-141 99-131 (374)
465 PRK06483 dihydromonapterin red 76.9 3.5 7.5E-05 40.1 4.6 31 112-142 4-36 (236)
466 KOG0685 Flavin-containing amin 76.7 3.2 6.9E-05 45.0 4.5 34 222-255 246-280 (498)
467 PRK06924 short chain dehydroge 76.7 3.4 7.3E-05 40.5 4.5 30 113-142 4-35 (251)
468 PRK02472 murD UDP-N-acetylmura 76.6 3.3 7.2E-05 44.8 4.8 32 112-143 7-39 (447)
469 PRK05597 molybdopterin biosynt 76.6 3.2 7E-05 43.9 4.5 32 111-142 29-62 (355)
470 cd00401 AdoHcyase S-adenosyl-L 76.5 3.2 7E-05 44.8 4.5 31 112-142 204-235 (413)
471 PRK05854 short chain dehydroge 76.4 3.3 7.2E-05 42.6 4.5 31 112-142 16-48 (313)
472 PRK07102 short chain dehydroge 76.4 3.2 7E-05 40.5 4.3 30 113-142 4-35 (243)
473 PRK05866 short chain dehydroge 76.3 3.4 7.3E-05 42.2 4.5 31 112-142 42-74 (293)
474 cd01485 E1-1_like Ubiquitin ac 76.3 3.6 7.8E-05 39.7 4.4 32 111-142 20-53 (198)
475 PRK10538 malonic semialdehyde 76.2 3.3 7.2E-05 40.7 4.3 30 113-142 3-34 (248)
476 PRK12481 2-deoxy-D-gluconate 3 76.0 3.6 7.7E-05 40.7 4.5 30 112-141 10-41 (251)
477 PRK07063 short chain dehydroge 76.0 3.4 7.4E-05 40.8 4.4 31 112-142 9-41 (260)
478 PRK08265 short chain dehydroge 76.0 3.5 7.5E-05 41.0 4.4 31 112-142 8-40 (261)
479 PRK07024 short chain dehydroge 76.0 3.6 7.9E-05 40.7 4.5 31 112-142 4-36 (257)
480 PRK07023 short chain dehydroge 75.9 3.5 7.6E-05 40.3 4.4 31 112-142 3-35 (243)
481 PLN02487 zeta-carotene desatur 75.8 1.5E+02 0.0032 33.6 19.6 59 110-168 75-151 (569)
482 TIGR00518 alaDH alanine dehydr 75.8 3.2 7E-05 44.1 4.3 32 111-142 168-200 (370)
483 PRK03803 murD UDP-N-acetylmura 75.8 3.4 7.3E-05 44.9 4.6 32 111-142 7-39 (448)
484 PRK07326 short chain dehydroge 75.8 3.4 7.3E-05 40.1 4.2 31 112-142 8-40 (237)
485 PRK06179 short chain dehydroge 75.8 3.5 7.7E-05 41.0 4.4 31 112-142 6-38 (270)
486 PRK06720 hypothetical protein; 75.8 4 8.7E-05 38.3 4.5 31 112-142 18-50 (169)
487 PRK08762 molybdopterin biosynt 75.7 3.5 7.5E-05 43.9 4.5 33 111-143 136-170 (376)
488 PF03446 NAD_binding_2: NAD bi 75.7 3.6 7.9E-05 38.2 4.2 31 112-142 3-34 (163)
489 PRK07411 hypothetical protein; 75.6 3.4 7.4E-05 44.3 4.4 33 111-143 39-73 (390)
490 PRK07231 fabG 3-ketoacyl-(acyl 75.5 3.5 7.6E-05 40.2 4.2 31 112-142 7-39 (251)
491 PRK08267 short chain dehydroge 75.5 3.5 7.6E-05 40.8 4.3 30 113-142 4-35 (260)
492 PRK06398 aldose dehydrogenase; 75.4 3.9 8.4E-05 40.6 4.6 32 112-143 8-41 (258)
493 TIGR01832 kduD 2-deoxy-D-gluco 75.4 3.8 8.3E-05 40.0 4.5 31 112-142 7-39 (248)
494 PRK05600 thiamine biosynthesis 75.4 3.6 7.8E-05 43.8 4.5 33 111-143 42-76 (370)
495 PRK12384 sorbitol-6-phosphate 75.4 3.7 7.9E-05 40.5 4.4 30 113-142 5-36 (259)
496 PRK08017 oxidoreductase; Provi 75.4 3.6 7.8E-05 40.4 4.3 31 112-142 4-36 (256)
497 TIGR03315 Se_ygfK putative sel 75.3 25 0.00054 42.4 11.8 31 112-142 668-701 (1012)
498 TIGR02279 PaaC-3OHAcCoADH 3-hy 75.2 3.2 6.8E-05 46.1 4.2 57 112-169 7-64 (503)
499 PRK06114 short chain dehydroge 75.1 4.1 8.8E-05 40.2 4.6 31 112-142 10-42 (254)
500 COG1250 FadB 3-hydroxyacyl-CoA 75.1 2.3 5.1E-05 43.9 2.9 60 112-172 5-65 (307)
No 1
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=1.2e-32 Score=292.40 Aligned_cols=345 Identities=18% Similarity=0.218 Sum_probs=217.7
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC--CCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhcc------C
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT--LKGREQEWNISRKELLELVESGILVEDDIDEATATKF------N 180 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~--~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~------~ 180 (546)
.+||+|||| ++|+++|+.|+++|++|+||||.+ +....+...|++++++.|+++|+++. ++..-...+ .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~--i~~~~~~~~~~~~~~~ 79 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR--LEALGVPPLHVMVVDD 79 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhh--hhhccCCceeeEEEec
Confidence 589999996 569999999999999999999982 22334678899999999999999532 222111000 1
Q ss_pred C--CcccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEc-CCcEEEcCEEEEe
Q 009027 181 P--NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDA 256 (546)
Q Consensus 181 ~--~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~-~g~~i~ArlVV~A 256 (546)
. ..+.|... .... ..+++.+.+..|.+.|.+++.+.+ ++++++++|+.+..+++.+.++++ +|++++||+||+|
T Consensus 80 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgA 157 (387)
T COG0654 80 GGRRLLIFDAA-ELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGA 157 (387)
T ss_pred CCceeEEeccc-ccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEEC
Confidence 1 12333321 1111 345688999999999999999887 699999999999999999999998 8999999999999
Q ss_pred cCCChHHHHHhcCCC----CCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE
Q 009027 257 MGNFSPVVKQIRSGR----KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (546)
Q Consensus 257 DG~~S~vr~ql~~~~----~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~ 332 (546)
||.+|.+|+++++.. .+...++++.......+.....+.+...+++. .+|.++. ....++.
T Consensus 158 DG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~p~~~~---~~~~~~~ 222 (387)
T COG0654 158 DGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFA------------LLPLPDN---RSSVVWS 222 (387)
T ss_pred CCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceE------------EEecCCC---ceeEEEE
Confidence 999999999998332 23333333221111011122222333222221 3344321 1222221
Q ss_pred ccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcch
Q 009027 333 YIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFG 409 (546)
Q Consensus 333 ~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g 409 (546)
...... ...+.+++.+.+...+|.... +....... ....+|.....+.++..+|++|+|||||.+||++|||+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~n 299 (387)
T COG0654 223 LPPGPAEDLQGLSDEEFLRELQRRLGERDP--LGRVTLVS-SRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGAN 299 (387)
T ss_pred CChhhHHHHhcCCHHHHHHHHHHhcCcccc--cceEEEcc-ccccccccchhhhheecCcEEEEeeccccCCCccccchh
Confidence 111000 011333333444444444311 11111111 113567765566688889999999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcChh
Q 009027 410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIP 488 (546)
Q Consensus 410 ~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g~~ 488 (546)
++++|+..|++.|..+...+. + ...|++|++.- +..... +..++. .+...+.+.......++..++.
T Consensus 300 lgl~Da~~La~~L~~~~~~~~-~---~~~L~~Y~~~R----~~~~~~---~~~~s~-~~~~~~~~~~~~~~~~r~~~l~ 366 (387)
T COG0654 300 LALEDAAALAEALAAAPRPGA-D---AAALAAYEARR----RPRAEA---IQKLSR-ALGRLFSADGPFARFLRNLGLR 366 (387)
T ss_pred hhhhhHHHHHHHHHHHhhcCc-c---HHHHHHHHHhh----hhHHHH---HHHHHH-HHhhhhccCCcHHHHHHHHHHH
Confidence 999999999999999987432 2 55678999211 111111 111122 2334456677777777776665
No 2
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=2.5e-32 Score=289.74 Aligned_cols=344 Identities=17% Similarity=0.149 Sum_probs=213.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-------cccccCCHHHHHHHHHcCCCCcccchhhh------
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDEAT------ 175 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-------~r~~~Is~~~l~~L~~lGl~~~~~ie~~i------ 175 (546)
+|||+||||| +|+++|+.|+++|++|+|+|+.+.+.. .+...+++.+++.|+.+|+|+..+-....
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 6999999965 699999999999999999999864321 13457899999999999999752210000
Q ss_pred hhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 009027 176 ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (546)
Q Consensus 176 ~~~~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV 254 (546)
...+....+.|... .... ..+++.+++..|++.|.+++.+. |++++.+++++++..+++++.|++++|++++|++||
T Consensus 85 ~~~~~~~~~~~~~~-~~~~-~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDAA-ELKL-PELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEeccc-ccCC-CccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 00111222323211 1111 22456799999999999998876 889999999999988888899988888899999999
Q ss_pred EecCCChHHHHHhcCCC---CCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027 255 DAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (546)
Q Consensus 255 ~ADG~~S~vr~ql~~~~---~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~ 331 (546)
+|||.+|++|++++.+. .+.+.+.++.......+.....+.+...++ .. .+|..++ .. .+.
T Consensus 163 ~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~-~~p~~~~---~~-~~v 226 (391)
T PRK08020 163 GADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGP-----------RA-FLPLFDN---WA-SLV 226 (391)
T ss_pred EeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCC-----------EE-EeECCCC---cE-EEE
Confidence 99999999999998653 223334332221111111111122222111 11 2344322 11 122
Q ss_pred EccCCCC----CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 009027 332 TYIDPQA----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (546)
Q Consensus 332 ~~~~~~~----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G 407 (546)
.+..... ...+.+++.+.+.+.+|.. +..+... ....+|+......++..+|++|+|||||.+||+.|||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG 300 (391)
T PRK08020 227 WYDSPARIRQLQAMSMAQLQQEIAAHFPAR----LGAVTPV--AAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQG 300 (391)
T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHHhhhh----ccceEec--cccEeecceeehhhhccCcEEEEechhhccCCcccch
Confidence 2211100 0012233333333333221 1111111 2245677655556788899999999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhh--cCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhc
Q 009027 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK--LGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQV 485 (546)
Q Consensus 408 ~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~--l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~ 485 (546)
+|++++|+..|++.+.++.+.+. +......|+.|++ .++...... .+.. +...+.++......+|..
T Consensus 301 ~n~al~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~---------~~~~-l~~~~~~~~~~~~~~R~~ 369 (391)
T PRK08020 301 VNLGYRDVDALLDVLVNARSYGE-AWASEAVLKRYQRRRMADNLLMQS---------GMDL-FYAGFSNNLPPLRFARNL 369 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHHHHHH---------HHHH-HHHHHcCCchHHHHHHHH
Confidence 99999999999999998876543 3334456789992 222222111 2222 333456666677777776
Q ss_pred Chh
Q 009027 486 GIP 488 (546)
Q Consensus 486 g~~ 488 (546)
++.
T Consensus 370 ~l~ 372 (391)
T PRK08020 370 GLM 372 (391)
T ss_pred HHH
Confidence 665
No 3
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-32 Score=293.46 Aligned_cols=311 Identities=17% Similarity=0.152 Sum_probs=196.0
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-------cccccCCHHHHHHHHHcCCCCcccchhh-hhhcc-
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDEA-TATKF- 179 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-------~r~~~Is~~~l~~L~~lGl~~~~~ie~~-i~~~~- 179 (546)
+|||+|||| ++|+++|+.|+++|++|+|+||.+.+.. .+...|++.+++.|+++|+|+...-... .....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 589999996 5799999999999999999999886432 2445689999999999999865211100 00000
Q ss_pred --CC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEE
Q 009027 180 --NP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (546)
Q Consensus 180 --~~---~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlV 253 (546)
.. ..+.|... .... ...++.+++..|++.|.+++.+. |++++.+++++++..+++++.|++.+|++++||+|
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~-~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 83 VWDKDSFGRIAFDDQ-SMGY-SHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEeCCCCceEEEccc-ccCC-CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence 00 11222111 0011 11346799999999999999886 78999999999999989999999988999999999
Q ss_pred EEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCCCc-eeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027 254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (546)
Q Consensus 254 V~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~~-~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~ 329 (546)
|+|||.+|.||++++++.. +...+.+.. +....+... ....+. +.+.++ .+|..++. ...+
T Consensus 161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~~--~~~~ 225 (400)
T PRK08013 161 VGADGANSWLRNKADIPLTFWDYQHHALVAT-IRTEEPHDAVARQVFH-----------GDGILA-FLPLSDPH--LCSI 225 (400)
T ss_pred EEeCCCCcHHHHHcCCCccccccCcEEEEEE-EeccCCCCCEEEEEEc-----------CCCCEE-EEECCCCC--eEEE
Confidence 9999999999999987643 223333221 111111111 111111 123444 45665431 2222
Q ss_pred EEEccCCCCC---CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 009027 330 MFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (546)
Q Consensus 330 l~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~ 406 (546)
.+........ .....++.+.+...++. .++..++... ...+|+......+++.+||+|+|||||.+||++||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~l~~~~~~~~-~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQ 300 (400)
T PRK08013 226 VWSLSPEEAQRMQQAPEEEFNRALAIAFDN----RLGLCELESE-RQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQ 300 (400)
T ss_pred EEEcCHHHHHHHHcCCHHHHHHHHHHHHhH----hhCceEecCC-ccEEecceeecccccCCcEEEEechhhcCCccccC
Confidence 2222110000 01112222222211211 0112222111 12355554455678899999999999999999999
Q ss_pred cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|+|++++|+..|++.|..++..+. +......|+.|+
T Consensus 301 G~n~gi~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~ 336 (400)
T PRK08013 301 GVNLGFMDAAELIAELRRLHRQGK-DIGQHLYLRRYE 336 (400)
T ss_pred chhhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHH
Confidence 999999999999999988876553 222334578999
No 4
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.5e-32 Score=288.66 Aligned_cols=327 Identities=14% Similarity=0.170 Sum_probs=203.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-----CcccccCCHHHHHHHHHcCCCCcccchhhhhhccCC--
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-----REQEWNISRKELLELVESGILVEDDIDEATATKFNP-- 181 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~-----~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~-- 181 (546)
.+||+||||| +|+++|+.|++.|++|+|+|+.+++. ..+...+++++++.|+++|+|+. +++. ...+..
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~--l~~~-~~~~~~~~ 77 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEE--LEKF-VAEMQDIY 77 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHH--HHhh-cCCCcEEE
Confidence 3799999965 69999999999999999999875432 24677899999999999999964 2221 111100
Q ss_pred -------CcccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEE
Q 009027 182 -------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (546)
Q Consensus 182 -------~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlV 253 (546)
..+.|.. .....+++.+++..|++.|.+++.+.+ ++++.+++++++..+++++.|+++++ +++|++|
T Consensus 78 ~~~~~g~~~~~~~~----~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlv 152 (374)
T PRK06617 78 VVDNKASEILDLRN----DADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLL 152 (374)
T ss_pred EEECCCceEEEecC----CCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEE
Confidence 0111211 011235688999999999999998886 68999999999999999999999766 8999999
Q ss_pred EEecCCChHHHHHhcCCC--CCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027 254 IDAMGNFSPVVKQIRSGR--KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (546)
Q Consensus 254 V~ADG~~S~vr~ql~~~~--~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~ 331 (546)
|+|||.+|.+|++++... ...+.+.+........+.+...+.+...+ .+| .+|..++ ....++
T Consensus 153 IgADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~~~~~~~~~~~~g-----------~~~-~lPl~~~---~~~~~v 217 (374)
T PRK06617 153 IICDGANSKVRSHYFANEIEKPYQTALTFNIKHEKPHENCAMEHFLPLG-----------PFA-LLPLKDQ---YASSVI 217 (374)
T ss_pred EEeCCCCchhHHhcCCCcccccCCeEEEEEEeccCCCCCEEEEEecCCC-----------CEE-EeECCCC---CeEEEE
Confidence 999999999999987653 11133433221111111111233332222 244 4566543 211222
Q ss_pred EccCCCC-----C-C-ccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCC
Q 009027 332 TYIDPQA-----G-S-PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS 404 (546)
Q Consensus 332 ~~~~~~~-----~-~-~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pls 404 (546)
....... . . ..+.++++.++. . . ++.+.... ....+|++.....+++.+||+|+|||||.+||++
T Consensus 218 w~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~-~~~i~~~~-~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~ 289 (374)
T PRK06617 218 WSTSSDQAALIVNLPVEEVRFLTQRNAG---N---S-LGKITIDS-EISSFPLKARIANRYFHNRIVLIADTAHTVHPLA 289 (374)
T ss_pred EeCCHHHHHHHHcCCHHHHHHHHHHhhc---h---h-cCceeecc-ceeEEEeeeeeccceecCCEEEEEcccccCCCCc
Confidence 2111000 0 0 111222222111 1 0 12222111 1245787766566888999999999999999999
Q ss_pred CCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh--hcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHH
Q 009027 405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM--KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIF 482 (546)
Q Consensus 405 g~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye--~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~ 482 (546)
|||+|++++|+..|++.|. . . ..|+.|+ +.++......+++ . +...+.+.......+
T Consensus 290 GQG~n~gl~Da~~La~~L~----~---~----~~L~~Ye~~R~~~~~~~~~~t~---------~-l~~~f~~~~~~~~~~ 348 (374)
T PRK06617 290 GQGLNQGIKDIEILSMIVS----N---N----GTLQEYQKLRQEDNFIMYKLTD---------E-LNNIFSNYSKNLRCL 348 (374)
T ss_pred cccHHHHHHHHHHHHHHHc----C---c----chHHHHHHHHhHHHHHHHHHHH---------H-HHHHHcCCchHHHHH
Confidence 9999999999999987762 1 1 3568899 2222222222222 2 333345555566666
Q ss_pred HhcChh
Q 009027 483 KQVGIP 488 (546)
Q Consensus 483 ~~~g~~ 488 (546)
|..++.
T Consensus 349 R~~~l~ 354 (374)
T PRK06617 349 RQIGFK 354 (374)
T ss_pred HHHHHH
Confidence 665553
No 5
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=9.1e-32 Score=285.81 Aligned_cols=339 Identities=18% Similarity=0.177 Sum_probs=213.0
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCCcccchhhhhhccC--
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKFN-- 180 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~------~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~-- 180 (546)
.+||+|||| ++|+++|+.|+++|++|+||||++.++. .+...+++.+++.|+.+|+|+.. ++.....+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~--~~~~~~~~~~~ 83 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAV--RAARAQPYRRM 83 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhh--hHhhCCcccEE
Confidence 689999996 5699999999999999999999876542 24457999999999999999752 211011111
Q ss_pred -------CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEE
Q 009027 181 -------PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (546)
Q Consensus 181 -------~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlV 253 (546)
...+.|... .+ .+..+++.+++..|.+.|.+++.+.|++++.+++++++..++++++|++++|++++|++|
T Consensus 84 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v 161 (392)
T PRK08773 84 RVWDAGGGGELGFDAD-TL-GREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA 161 (392)
T ss_pred EEEeCCCCceEEechh-cc-CCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence 011222111 01 112345779999999999999999999999999999999988999999888889999999
Q ss_pred EEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCCC-ceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027 254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (546)
Q Consensus 254 V~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~-~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~ 329 (546)
|+|||.+|.+++++++..+ +...+.+. .+....+.. ...+.+... +.+. .+|..++ ...+
T Consensus 162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~-----------g~~~-~lP~~~~---~~~~ 225 (392)
T PRK08773 162 IAADGAASTLRELAGLPVSRHDYAQRGVVA-FVDTEHPHQATAWQRFLPT-----------GPLA-LLPFADG---RSSI 225 (392)
T ss_pred EEecCCCchHHHhhcCCceEEEeccEEEEE-EEEccCCCCCEEEEEeCCC-----------CcEE-EEECCCC---ceEE
Confidence 9999999999999876532 11112111 111011111 111122111 1121 3455433 2222
Q ss_pred EEEccCCCC------CCc-cHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCC
Q 009027 330 MFTYIDPQA------GSP-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402 (546)
Q Consensus 330 l~~~~~~~~------~~~-~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~P 402 (546)
++.+..... ... ..+++.+.|...++.+.. ... ...+|++.....++..+|++|+|||||.+||
T Consensus 226 ~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P 296 (392)
T PRK08773 226 VWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRV--------ASP-RTAFPLRRQLVQQYVSGRVLTLGDAAHVVHP 296 (392)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEe--------cCC-ccEeechhhhhhhhcCCcEEEEechhhcCCC
Confidence 222211000 001 112222233222222211 111 1245666555567889999999999999999
Q ss_pred CCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhh--cCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHH
Q 009027 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK--LGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPS 480 (546)
Q Consensus 403 lsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~--l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~ 480 (546)
++|||+|++++|+..|++.|.+++..+. +..+...|++|++ ..+........| .+..++.+......
T Consensus 297 ~~GqG~n~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~y~~~R~~~~~~~~~~~~----------~l~~~f~~~~~~~~ 365 (392)
T PRK08773 297 LAGQGVNLGLRDVAALQQLVRQAHARRA-DWAAPHRLQRWARTRRSDNTVAAYGFD----------AINRVFSNDEMHLT 365 (392)
T ss_pred chhchhhhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHcCCChHHH
Confidence 9999999999999999999999886553 3344567899992 222222222222 34445676666666
Q ss_pred HHHhcChh
Q 009027 481 IFKQVGIP 488 (546)
Q Consensus 481 ~~~~~g~~ 488 (546)
.+|.+++.
T Consensus 366 ~~r~~~l~ 373 (392)
T PRK08773 366 LLRGSVLG 373 (392)
T ss_pred HHHHHHHH
Confidence 66666554
No 6
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=9.6e-30 Score=274.69 Aligned_cols=348 Identities=16% Similarity=0.128 Sum_probs=209.6
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
.+|||+|||| |+|+++|..||++|++|+|+||+..........|+.. .|+++|+++. .+........+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~---~l~~lgl~~~-----~~~~~i~~~~~~~p 109 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLC---MVGEFDLPLD-----IIDRKVTKMKMISP 109 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---HHhhhcCcHH-----HHHHHhhhheEecC
Confidence 4699999996 5799999999999999999999864322223457643 4566787532 11111111111100
Q ss_pred CCccccc-----cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe---CCeEEEEEcC-------C--cEEEc
Q 009027 188 GKGEIWV-----EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAE-------G--KILSS 250 (546)
Q Consensus 188 ~~~~l~~-----~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dgv~V~~~~-------g--~~i~A 250 (546)
+...+.. +......++|..|++.|.++|.++|++++.+ +++++... ++.+.|++.+ | .+++|
T Consensus 110 ~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a 188 (450)
T PLN00093 110 SNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEV 188 (450)
T ss_pred CceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEe
Confidence 1111111 1111235899999999999999999999876 57777642 2456666532 3 48999
Q ss_pred CEEEEecCCChHHHHHhcCCCCCCeeeeEEEEEeeccC------CCceeeeeccCCcccccCCCCcceEEEEecCCCCCc
Q 009027 251 HLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFK------DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPL 324 (546)
Q Consensus 251 rlVV~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~~~------~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~ 324 (546)
|+||+|||.+|.++++++.+.. ..+..+..... .+ +....++++... +.+ ..|.| +||.++.
T Consensus 189 ~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~-~~p-----~~Y~W-ifP~g~~-- 256 (450)
T PLN00093 189 DAVIGADGANSRVAKDIDAGDY--DYAIAFQERIK-IPDDKMEYYEDLAEMYVGDD-VSP-----DFYGW-VFPKCDH-- 256 (450)
T ss_pred CEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEe-CChhhccccCCeEEEEeCCC-CCC-----CceEE-EEECCCc--
Confidence 9999999999999999987532 22221111111 11 112334443322 222 47889 8999853
Q ss_pred cceEEEEEccCCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCC
Q 009027 325 DRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS 404 (546)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pls 404 (546)
..+.+..... ..++.++++.+...++.. +...++.+...+.+|.. ...++..+|++|||||||+++|++
T Consensus 257 -~~VG~g~~~~----~~~~~~~~~~l~~~~~~~----l~~~~~~~~~~~~ip~~--~~~~~~~~~vlLvGDAAg~v~P~t 325 (450)
T PLN00093 257 -VAVGTGTVVN----KPAIKKYQRATRNRAKDK----IAGGKIIRVEAHPIPEH--PRPRRVRGRVALVGDAAGYVTKCS 325 (450)
T ss_pred -EEEEEEEccC----CCChHHHHHHHHHHhhhh----cCCCeEEEEEEEEcccc--cccceeCCCcEEEeccccCCCccc
Confidence 3444433221 224444444333222210 11122233334456663 234667899999999999999999
Q ss_pred CCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHh
Q 009027 405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 484 (546)
Q Consensus 405 g~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~ 484 (546)
|+|++.+++++..+++.|.++++.|.- ..+...|+.|++ ...+.|.... .....+.+.+.+++..++.++..
T Consensus 326 GeGI~~Am~sg~~AAe~i~~~~~~g~~-~~s~~~L~~Y~~---~~~~~~g~~~----~~~~~l~~~~~~~~~~~~~~~~~ 397 (450)
T PLN00093 326 GEGIYFAAKSGRMCAEAIVEGSENGTR-MVDEADLREYLR---KWDKKYWPTY----KVLDILQKVFYRSNPAREAFVEM 397 (450)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCC-cCCHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 999999999999999999999976531 112345678983 2222332222 12233334444566777788887
Q ss_pred cChhhHHHHHHH
Q 009027 485 VGIPVLVDWSGH 496 (546)
Q Consensus 485 ~g~~~~~~w~~~ 496 (546)
....++.+.+..
T Consensus 398 ~~~~~~~~~~~~ 409 (450)
T PLN00093 398 CADEYVQKMTFD 409 (450)
T ss_pred hhhhhHHHHhHH
Confidence 777766666554
No 7
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=6.7e-31 Score=283.43 Aligned_cols=349 Identities=17% Similarity=0.162 Sum_probs=209.5
Q ss_pred ccEEEEcch-HHHHHHHHHHh----CCCeEEEEcCCCCCC-------------CcccccCCHHHHHHHHHcCCCCcccch
Q 009027 111 FDVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKG-------------REQEWNISRKELLELVESGILVEDDID 172 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~----~G~rVlLlEr~~~~~-------------~~r~~~Is~~~l~~L~~lGl~~~~~ie 172 (546)
|||+||||| +|+++|+.|++ +|++|+||||++.+. ..|...|++.+++.|+.+|+|+.. .
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l--~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHI--Q 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhh--h
Confidence 799999965 69999999998 899999999965333 135678999999999999999742 2
Q ss_pred hhhhhcc------C---CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcC---CEEEeCceEEEEEEe------
Q 009027 173 EATATKF------N---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTY------ 234 (546)
Q Consensus 173 ~~i~~~~------~---~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G---~~v~~~t~v~~i~~~------ 234 (546)
+.....+ . ...+.|.... ....+++.+++..|.+.|.+++.+.+ ++++.+++|+++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~ 155 (437)
T TIGR01989 79 SDRIQPFGRMQVWDGCSLALIRFDRDN---GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPND 155 (437)
T ss_pred hhcCCceeeEEEecCCCCceEEeecCC---CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccC
Confidence 1100000 0 0112222111 11234678999999999999998875 799999999999752
Q ss_pred -CCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCC
Q 009027 235 -ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSE 309 (546)
Q Consensus 235 -~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~ 309 (546)
+++++|++.+|++++|++||+|||.+|.+|+++++... +.+.+.+........+ .+...+.+...
T Consensus 156 ~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~---------- 225 (437)
T TIGR01989 156 NSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPT---------- 225 (437)
T ss_pred CCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCC----------
Confidence 56788999889999999999999999999999987642 3333332221111111 12222333222
Q ss_pred cceEEEEecCCCCCccceEEEEEccCCCCC---CccHHHHHHHHHHhC-------cc----------cc---cccc-Cc-
Q 009027 310 VQLFWEAFPAGSGPLDRTTYMFTYIDPQAG---SPKLEELLERYWDLM-------PE----------YQ---GVTL-DN- 364 (546)
Q Consensus 310 ~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~---~~~l~~l~~~~~~~l-------p~----------~~---~~~l-~~- 364 (546)
+.++ ..|..++ ....++........ ..+.+++.+...+.+ |. +. ...+ +.
T Consensus 226 -g~~~-~lPl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~ 300 (437)
T TIGR01989 226 -GPIA-LLPLPDN---NSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSK 300 (437)
T ss_pred -CCEE-EeECCCC---CEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 2233 3455443 22222222110000 001112211111111 00 00 0000 00
Q ss_pred ---------ceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhh
Q 009027 365 ---------LEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYS 435 (546)
Q Consensus 365 ---------~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~ 435 (546)
..........+|+....+.++..+|++|+|||||.+||++|||+|++++|+..|++.|..+++.+. +..+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~-~~~~ 379 (437)
T TIGR01989 301 SCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGA-DIGS 379 (437)
T ss_pred cccccCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCC-ChhH
Confidence 000111113567765556678899999999999999999999999999999999999999887653 3333
Q ss_pred HHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcChh
Q 009027 436 LSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIP 488 (546)
Q Consensus 436 l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g~~ 488 (546)
...|+.|++ .+++.....+ .+++. +...+.++......+|..++.
T Consensus 380 ~~~L~~Y~~----~R~~~~~~v~---~~t~~-l~~l~~~~~~~~~~~R~~~l~ 424 (437)
T TIGR01989 380 ISSLKPYER----ERYAKNVVLL---GLVDK-LHKLYATDFPPVVALRTFGLN 424 (437)
T ss_pred HHHHHHHHH----HHHHHHHHHH---HHHHH-HHHHHcCCccHHHHHHHHHHH
Confidence 456889992 2222222222 12222 223345666666666665543
No 8
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-30 Score=277.74 Aligned_cols=342 Identities=16% Similarity=0.069 Sum_probs=211.5
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CCcccccCCHHHHHHHHHcCCCCcccchhhhhhccC------
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQEWNISRKELLELVESGILVEDDIDEATATKFN------ 180 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~-~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~------ 180 (546)
.+|||+||||| +|+++|+.|+++|++|+|||+++.+ +..+...+++.+++.|+++|+|++ +.+.......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~--~~~~~~~~~~~~~~~~ 82 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLER--FLELPHQKVRTLRFEI 82 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhH--HhhcccceeeeEEEEE
Confidence 36999999965 6999999999999999999998643 334566899999999999999864 2221100010
Q ss_pred CC----cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE---EEEcCCc-EEEcC
Q 009027 181 PN----RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSSH 251 (546)
Q Consensus 181 ~~----~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~---V~~~~g~-~i~Ar 251 (546)
.+ .+.|.. ...+..+.+.+++..+.+.|.+++.+. |++++++++++++..+++.+. +...+|+ +++|+
T Consensus 83 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~ 159 (407)
T PRK06185 83 GGRTVTLADFSR---LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRAD 159 (407)
T ss_pred CCeEEEecchhh---cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeC
Confidence 00 011111 111122445688999999999998765 789999999999988877653 3334564 79999
Q ss_pred EEEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCCC--ceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027 252 LIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDN--STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (546)
Q Consensus 252 lVV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~--~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~ 326 (546)
+||+|||.+|.+|+++++..+ +.+.+..+. ....+.+ ...+.+. ..++++ .+|.. + .
T Consensus 160 ~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~g~~~-llP~~-~---~ 221 (407)
T PRK06185 160 LVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPREPDDPESLMGRFG-----------PGQGLI-MIDRG-D---Y 221 (407)
T ss_pred EEEECCCCchHHHHHcCCCccccCCCceeEEEe--cCCCCCCCcccceEec-----------CCcEEE-EEcCC-C---e
Confidence 999999999999999987532 222221111 1100000 1111111 124444 45654 3 2
Q ss_pred eEEEEEccCCCCC---CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCC
Q 009027 327 TTYMFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV 403 (546)
Q Consensus 327 ~~~l~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pl 403 (546)
....+........ ..+.+++.+.+....|.+... ++.++.... ...+|+......+++.+|++|+|||||.+||+
T Consensus 222 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-l~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~ 299 (407)
T PRK06185 222 WQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADR-VAELKSWDD-VKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPV 299 (407)
T ss_pred EEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHH-HhhcCCccc-cEEEEEeccccccccCCCeEEEeccccccCcc
Confidence 2222222111111 123445555554555554331 222221111 12456655556678889999999999999999
Q ss_pred CCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh--hcCchhhhHHHHhhhcchhHHHHHHHHHhhCCC--cHH
Q 009027 404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM--KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQ--IIP 479 (546)
Q Consensus 404 sg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye--~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~--~l~ 479 (546)
+|||+|++++|+..|++.|.++++.++... ..|+.|+ +..+......++|. +..++.++. .+.
T Consensus 300 ~GqG~nlgl~Da~~La~~l~~~~~~~~~~~---~~L~~Y~~~R~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 366 (407)
T PRK06185 300 GGVGINLAIQDAVAAANILAEPLRRGRVSD---RDLAAVQRRREFPTRVTQALQRR----------IQRRLLAPALAGRG 366 (407)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccCCccH---HHHHHHHHHhhhHHHHHHHHHHH----------HHHhhccccccCcc
Confidence 999999999999999999999987664222 5678999 22222222233332 223345555 556
Q ss_pred HHHHhcChh
Q 009027 480 SIFKQVGIP 488 (546)
Q Consensus 480 ~~~~~~g~~ 488 (546)
.++|.+++.
T Consensus 367 ~~~R~~~l~ 375 (407)
T PRK06185 367 PLGPPLLLR 375 (407)
T ss_pred ccCCchHHH
Confidence 666666654
No 9
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.98 E-value=2.1e-30 Score=276.48 Aligned_cols=344 Identities=13% Similarity=0.111 Sum_probs=208.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC---------CCcccccCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK---------GREQEWNISRKELLELVESGILVEDDIDEATATKF 179 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~---------~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~ 179 (546)
.|||+||||| +|+++|+.|+++|++|+|+|+++.+ ...+...+++++++.|+.+|+|+. +.+.....+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~--l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDG--IAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhh--hhHhhCccc
Confidence 4899999965 6999999999999999999998731 123456799999999999999864 221100000
Q ss_pred ------CC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEc
Q 009027 180 ------NP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSS 250 (546)
Q Consensus 180 ------~~---~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~A 250 (546)
.. ..+.|... .... ..+++.+++..+.+.|.+++.+.|++++.+++++++..++++++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a 157 (405)
T PRK05714 80 SEMQVWDGSGTGQIHFSAA-SVHA-EVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRA 157 (405)
T ss_pred eeEEEEcCCCCceEEeccc-ccCC-CccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence 00 11122210 1111 2245678999999999999988899999999999999999999999888889999
Q ss_pred CEEEEecCCChHHHHHhcCCCCC---CeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027 251 HLIIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (546)
Q Consensus 251 rlVV~ADG~~S~vr~ql~~~~~~---~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~ 326 (546)
++||+|||.+|.+|+++++..+. .+.+.+. ......+ .......+.. .+.++ .+|..++....
T Consensus 158 ~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~g~~~-~~P~~~~~~~~ 224 (405)
T PRK05714 158 PLVVAADGANSAVRRLAGCATREWDYLHHAIVT-SVRCSEPHRATAWQRFTD-----------DGPLA-FLPLERDGDEH 224 (405)
T ss_pred CEEEEecCCCchhHHhcCCCcccccCCceEEEE-EEEcCCCCCCEEEEEcCC-----------CCCeE-EeeCCCCCCCC
Confidence 99999999999999999765322 2222111 1100000 1111111111 12233 46654221111
Q ss_pred eEEEEEccCCCC-C---CccH----HHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCC
Q 009027 327 TTYMFTYIDPQA-G---SPKL----EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG 398 (546)
Q Consensus 327 ~~~l~~~~~~~~-~---~~~l----~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~ 398 (546)
...++....... . ..+. +++.+.|...++++... .. ...+|++.....++..+|++|+|||||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~--~~~~~l~~~~~~~~~~~rv~LlGDAAH 295 (405)
T PRK05714 225 WCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSA-------DP--RLCVPLRQRHAKRYVEPGLALIGDAAH 295 (405)
T ss_pred eEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceec-------CC--ccEEecceeehhhhccCCEEEEEeccc
Confidence 122221111100 0 0111 22222222222222111 11 124566655556788899999999999
Q ss_pred CCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcH
Q 009027 399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQII 478 (546)
Q Consensus 399 ~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l 478 (546)
.+||++|||.|++++|+..|++.|..++..+. +......|+.|++ .+++.....+ ..++.+. .++.++...
T Consensus 296 ~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~-~~~~~~~L~~Ye~----~R~~~~~~~~---~~~~~~~-~~~~~~~~~ 366 (405)
T PRK05714 296 TIHPLAGQGVNLGFLDAAVLAEVLLHAAERGE-RLADVRVLSRFER----RRMPHNLALM---AAMEGFE-RLFQADPLP 366 (405)
T ss_pred cCCCcccccccHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHH----HHHHHHHHHH---HHHHHHH-HHHCCCchH
Confidence 99999999999999999999999988876553 2222357889992 1222222211 2233223 334666666
Q ss_pred HHHHHhcChh
Q 009027 479 PSIFKQVGIP 488 (546)
Q Consensus 479 ~~~~~~~g~~ 488 (546)
...+|..+++
T Consensus 367 ~~~~R~~~l~ 376 (405)
T PRK05714 367 LRWLRNTGLK 376 (405)
T ss_pred HHHHHHHHHH
Confidence 6666766554
No 10
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.98 E-value=1.4e-30 Score=276.21 Aligned_cols=344 Identities=19% Similarity=0.188 Sum_probs=211.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhh--cc-C-CCc-
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT--KF-N-PNR- 183 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~--~~-~-~~~- 183 (546)
.||||||||| +|+++|+.|+++|++|+||||.+.+...+.+.+++.+++.|+++|+|+...-...... .+ . ...
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 5899999965 6999999999999999999999876666778899999999999999864211000000 00 0 000
Q ss_pred -----ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027 184 -----CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (546)
Q Consensus 184 -----v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG 258 (546)
..|.. .. .....+++.+++..+.+.|.+++.+.++..+.+++|+++..+++++.|++++|++++||+||+|||
T Consensus 87 ~~~~~~~~~~-~~-~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG 164 (388)
T PRK07494 87 IRAPEVRFRA-AE-IGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADG 164 (388)
T ss_pred CCCceEEEcH-Hh-cCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecC
Confidence 11110 00 011234677999999999999998876545889999999999999999988888999999999999
Q ss_pred CChHHHHHhcCCC---CCCeeeeEEEEEeeccCCCc-eeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEcc
Q 009027 259 NFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (546)
Q Consensus 259 ~~S~vr~ql~~~~---~~~~~~~~vg~~~~~~~~~~-~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~ 334 (546)
.+|.+|+++++.. .+.+.+.++.. ....+... ..+++.. .+.++ .+|..++ ...+++...
T Consensus 165 ~~S~vr~~~g~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~-----------~g~~~-~~Pl~~~---~~~~v~~~~ 228 (388)
T PRK07494 165 RNSPVREAAGIGVRTWSYPQKALVLNF-THSRPHQNVSTEFHTE-----------GGPFT-QVPLPGR---RSSLVWVVR 228 (388)
T ss_pred CCchhHHhcCCCceecCCCCEEEEEEE-eccCCCCCEEEEEeCC-----------CCcEE-EEECCCC---cEEEEEECC
Confidence 9999999987653 23333432221 11122111 1222221 12233 4666543 233332221
Q ss_pred CCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhh
Q 009027 335 DPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (546)
Q Consensus 335 ~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~ 411 (546)
.... ...+.+++.+.+...++.+ ++.++... ....+|+....+.++..+|++|+|||||.+||++|||+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~-~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~ 303 (388)
T PRK07494 229 PAEAERLLALSDAALSAAIEERMQSM----LGKLTLEP-GRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLG 303 (388)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh----cCCeEEcc-CCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchh
Confidence 1000 0112233333332323222 11221111 11356776555557788999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcChh
Q 009027 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIP 488 (546)
Q Consensus 412 lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g~~ 488 (546)
++|+..|++.|..... +......|+.|++. +++-....+ .... .+...+.++......+|.+++.
T Consensus 304 l~Da~~La~~L~~~~~----~~~~~~~L~~Y~~~----R~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~R~~~l~ 368 (388)
T PRK07494 304 LRDVATLVEIVEDRPE----DPGSAAVLAAYDRA----RRPDILSRT---ASVD-LLNRSLLSDFLPVQDLRAAGLH 368 (388)
T ss_pred HHHHHHHHHHHHhcCC----CcchHHHHHHHHHH----HHHHHHHHH---HHHH-HHHHHHcCCchHHHHHHHHHHH
Confidence 9999999999876321 11234567899921 111111111 1111 2334456666666666666554
No 11
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.98 E-value=1.8e-30 Score=275.48 Aligned_cols=302 Identities=17% Similarity=0.194 Sum_probs=187.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-------CcccccCCHHHHHHHHHcCCCCcccchhhhhhccC-
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-------REQEWNISRKELLELVESGILVEDDIDEATATKFN- 180 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~-------~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~- 180 (546)
.|||+||||| +|+++|+.|+++|++|+|+|+.+... ..++..|++++++.|+.+|+|+.. .+.....+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~--~~~~~~~~~~ 80 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSI--VAMRVCPYKR 80 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhh--hHhhCCccce
Confidence 4899999965 69999999999999999999875321 124457999999999999999642 111000010
Q ss_pred -------CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCE
Q 009027 181 -------PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (546)
Q Consensus 181 -------~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~Arl 252 (546)
.....|.. ..+.. ..+++.+++..|...|.+++.+. |++++.++++++++.++++++|++++|++++|++
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~-~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l 158 (384)
T PRK08849 81 LETWEHPECRTRFHS-DELNL-DQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW 158 (384)
T ss_pred EEEEeCCCceEEecc-cccCC-CccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence 01111111 01111 12356677778999999988665 5799999999999999999999999999999999
Q ss_pred EEEecCCChHHHHHhcCCC---CCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027 253 IIDAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (546)
Q Consensus 253 VV~ADG~~S~vr~ql~~~~---~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~ 329 (546)
||+|||.+|++|++++++. .+.+.+.++.......+.+...+.+...++.. ..|..++ ...+
T Consensus 159 vIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~------------~~pl~~~---~~~~ 223 (384)
T PRK08849 159 VIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRS------------FLPLCGN---QGSL 223 (384)
T ss_pred EEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEE------------EeEcCCC---ceEE
Confidence 9999999999999998753 23333332221111111111122222222211 1233322 1111
Q ss_pred EEEccCCCC----CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCC
Q 009027 330 MFTYIDPQA----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF 405 (546)
Q Consensus 330 l~~~~~~~~----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg 405 (546)
++ +..... ...+.+++.+.+.+.+|.. +..+... ....+|+......+++.+|++|+|||||.++|+.|
T Consensus 224 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~G 296 (384)
T PRK08849 224 VW-YDSPKRIKQLSAMNPEQLRSEILRHFPAE----LGEIKVL--QHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAG 296 (384)
T ss_pred EE-ECCHHHHHHHHcCCHHHHHHHHHHHhhhh----hCcEEec--cceEeeccccccchhccCCEEEEEcccccCCCCcc
Confidence 11 111000 0012233333333333321 1222211 22456766545567888999999999999999999
Q ss_pred CcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 406 ~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
||+|++++|+..|++.+.. .+. ..-..|+.||
T Consensus 297 QG~n~al~Da~~L~~~l~~---~~~---~~~~~L~~Ye 328 (384)
T PRK08849 297 QGVNLGFKDVDVLLAETEK---QGV---LNDASFARYE 328 (384)
T ss_pred chHhHHHHHHHHHHHHHHh---cCC---CcHHHHHHHH
Confidence 9999999999999877642 221 1234678999
No 12
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.98 E-value=1.7e-29 Score=269.12 Aligned_cols=310 Identities=23% Similarity=0.291 Sum_probs=207.3
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccc--ccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~--~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~ 185 (546)
.+|||||||| |+|+++|+.||++|++|+|+||+..++.+.+ ..+++..++.+ ......+ +........+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l---~~~~~~~----i~~~v~~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL---IPDFDEE----IERKVTGARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHh---CCCcchh----hheeeeeeEEE
Confidence 3799999995 6799999999999999999999999987643 35777766555 2211111 22222222233
Q ss_pred ccCCc-cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEcCEEEEecCCChHH
Q 009027 186 FEGKG-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 186 f~~~~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-g~~i~ArlVV~ADG~~S~v 263 (546)
+.+.. .+..+...++.|++..|+++|.++|.++|++++.+++++++..+++++++.+.. +.+++||+||+|||.+|.+
T Consensus 75 ~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 75 FPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL 154 (396)
T ss_pred ecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence 33211 122222347889999999999999999999999999999999999888776654 3689999999999999999
Q ss_pred HHHhcCCCC-CCeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCc
Q 009027 264 VKQIRSGRK-PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP 341 (546)
Q Consensus 264 r~ql~~~~~-~~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~ 341 (546)
++.++.... ++.....+... ...+ +....+.+....... ..+|.| +||.+++. ...++..........+
T Consensus 155 ~~~lg~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~-----~~Gy~w-ifP~~~~~--~~VG~g~~~~~~~~~~ 225 (396)
T COG0644 155 ARKLGLKDRKPEDYAIGVKEV-IEVPDDGDVEEFLYGPLDVG-----PGGYGW-IFPLGDGH--ANVGIGVLLDDPSLSP 225 (396)
T ss_pred HHHhCCCCCChhheeEEeEEE-EecCCCCceEEEEecCCccC-----CCceEE-EEECCCce--EEEEEEEecCCcCCCc
Confidence 999987722 22222111111 1222 122223322211222 368889 89998752 4555554433211123
Q ss_pred cHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHH
Q 009027 342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTG 421 (546)
Q Consensus 342 ~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~ 421 (546)
.. +++++|....+. .....+ .+......+.+|.+.....+.+.+|+++|||||++++|++|+|+..++..+..+++.
T Consensus 226 ~~-~~l~~f~~~~~~-~~~~~~-~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~ 302 (396)
T COG0644 226 FL-ELLERFKEHPAI-RKLLLG-GKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEA 302 (396)
T ss_pred hH-HHHHHHHhCccc-chhccC-CceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHH
Confidence 44 788888765432 221111 233444456788875433337889999999999999999999999999999999999
Q ss_pred HHHHHhCCCCChhhHHHHhhhh
Q 009027 422 VYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 422 I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|.++++.+ . +.|..|+
T Consensus 303 i~~~~~~~---~---~~l~~Y~ 318 (396)
T COG0644 303 IAEALEGG---E---EALAEYE 318 (396)
T ss_pred HHHHHHcC---h---hHHHHHH
Confidence 99999876 2 2334577
No 13
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.98 E-value=5.8e-30 Score=273.32 Aligned_cols=309 Identities=18% Similarity=0.138 Sum_probs=193.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC-CCCC-----CcccccCCHHHHHHHHHcCCCCcccchhhhhhcc---
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKG-----REQEWNISRKELLELVESGILVEDDIDEATATKF--- 179 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~-~~~~-----~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~--- 179 (546)
.|||+||||| +|+++|+.|+++|++|+|+|++ +.+. ..+...|++++++.|+++|+|++. .+.....+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l--~~~~~~~~~~~ 81 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGI--EARRAAPYIAM 81 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhh--hhhhCCcccEE
Confidence 5899999965 6999999999999999999996 3221 235567999999999999998652 21100000
Q ss_pred ---CC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCE
Q 009027 180 ---NP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (546)
Q Consensus 180 ---~~---~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~Arl 252 (546)
.. ..+.|... .... ..+++.+++..|.+.|.+++.+. |++++.+++|+++..+++++.|++++|++++|++
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~-~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~l 159 (405)
T PRK08850 82 EVWEQDSFARIEFDAE-SMAQ-PDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKL 159 (405)
T ss_pred EEEeCCCCceEEEecc-ccCC-CccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCE
Confidence 11 11222211 1111 12456788999999999998775 6899999999999998999999998898999999
Q ss_pred EEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCCCc-eeeeeccCCcccccCCCCcceEEEEecCCCCCccceE
Q 009027 253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328 (546)
Q Consensus 253 VV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~~-~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~ 328 (546)
||+|||.+|.+|++++++.. +.+.+.+. .+....+.+. ..+++.. .+.++ .+|..++ +...
T Consensus 160 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~-----------~g~~~-~lp~~~~--~~~~ 224 (405)
T PRK08850 160 VVGADGANSWLRRQMDIPLTHWDYGHSALVA-NVRTVDPHNSVARQIFTP-----------QGPLA-FLPMSEP--NMSS 224 (405)
T ss_pred EEEeCCCCChhHHHcCCCeeEEeeccEEEEE-EEEccCCCCCEEEEEEcC-----------CCceE-EEECCCC--CeEE
Confidence 99999999999999987643 22333222 1111111111 1122211 12222 3565533 1222
Q ss_pred EEEEccCCCCC---CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCC
Q 009027 329 YMFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF 405 (546)
Q Consensus 329 ~l~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg 405 (546)
..+........ ..+.+++.+...+.++.. +..++..... ..+|+......+++.+|++|+|||||.+||+.|
T Consensus 225 ~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~-~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~G 299 (405)
T PRK08850 225 IVWSTEPLRAEALLAMSDEQFNKALTAEFDNR----LGLCEVVGER-QAFPLKMRYARDFVRERVALVGDAAHTIHPLAG 299 (405)
T ss_pred EEEECCHHHHHHHHcCCHHHHHHHHHHHHhhh----hCcEEEcccc-cEEecceeeccccccCcEEEEEhhhhcCCcccc
Confidence 22222110000 011122222222222110 1111111111 245665545567889999999999999999999
Q ss_pred CcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 406 ~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
||+|++++|+..|++.|..+...+. +......|+.|+
T Consensus 300 QG~n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~ 336 (405)
T PRK08850 300 QGVNLGLLDAASLAQEILALWQQGR-DIGLKRNLRGYE 336 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHH
Confidence 9999999999999999998876543 222345678999
No 14
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=5.6e-30 Score=272.59 Aligned_cols=307 Identities=21% Similarity=0.218 Sum_probs=194.8
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCC--CeEEEEcCCCCCC---CcccccCCHHHHHHHHHcCCCCcccchhhhhh--cc-C
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKG--LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATAT--KF-N 180 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G--~rVlLlEr~~~~~---~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~--~~-~ 180 (546)
.|||+|||| ++|+++|+.|+++| ++|+|+||++... ..+...|++++++.|+++|+++...-...... .+ .
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 389999996 56999999999995 9999999987643 23567899999999999999864210000000 00 0
Q ss_pred --C------CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCE
Q 009027 181 --P------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (546)
Q Consensus 181 --~------~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~Arl 252 (546)
. ..+.|.+. ......+.+.|++..|.+.|.+++.+.|++++.+++|+++..+++++.|++++|.+++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGE--VEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL 158 (403)
T ss_pred CCCCCCCccceEEeccc--ccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence 0 00111110 0011223457899999999999999999999999999999998999999988888999999
Q ss_pred EEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027 253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (546)
Q Consensus 253 VV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~ 329 (546)
||+|||.+|.+++++++... +...+.++. .....+........+ . ..+++| .+|..++ ...+
T Consensus 159 vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~-----~~g~~~-~~Pl~~~---~~~~ 223 (403)
T PRK07333 159 LVAADGARSKLRELAGIKTVGWDYGQSGIVCT-VEHERPHGGRAEEHF-----L-----PAGPFA-ILPLKGN---RSSL 223 (403)
T ss_pred EEEcCCCChHHHHHcCCCcccccCCCEEEEEE-EEcCCCCCCEEEEEe-----C-----CCCceE-EeECCCC---CeEE
Confidence 99999999999999876532 222232211 111111111111111 0 134555 6788765 3333
Q ss_pred EEEccCCC-----CCC-c-cHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCC
Q 009027 330 MFTYIDPQ-----AGS-P-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402 (546)
Q Consensus 330 l~~~~~~~-----~~~-~-~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~P 402 (546)
.+...... ... . ...++.+.|...++. +..... ...+|.......++..+||+|||||||.++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P 294 (403)
T PRK07333 224 VWTERTADAERLVALDDLVFEAELEQRFGHRLGE--------LKVLGK-RRAFPLGLTLARSFVAPRFALVGDAAHGIHP 294 (403)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCc--------eEeccC-ccEeechhhhhhhccCCCEEEEechhhcCCC
Confidence 33221100 000 0 112222222222221 111111 1134544333456788999999999999999
Q ss_pred CCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 403 lsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
++|||+|++++|+..|++.|..+++.+. +......|+.|+
T Consensus 295 ~~GqG~n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Ye 334 (403)
T PRK07333 295 IAGQGLNLGLKDVAALAEVVVEAARLGL-DIGSLDVLERYQ 334 (403)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHH
Confidence 9999999999999999999998886432 222345678999
No 15
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=4.5e-29 Score=265.14 Aligned_cols=340 Identities=16% Similarity=0.136 Sum_probs=214.8
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC-CCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERN-TLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~-~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
|||||||| |+|+++|..||++|++|+|+||+ +.+. ...+.|++. .|+++|+.++ .+...+....+....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~-~cg~~i~~~---~l~~l~i~~~-----~~~~~~~~~~~~~~~ 71 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIK-PCGGAIPPC---LIEEFDIPDS-----LIDRRVTQMRMISPS 71 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcC-cCcCCcCHh---hhhhcCCchH-----HHhhhcceeEEEcCC
Confidence 79999995 57999999999999999999998 3222 234578765 3566677532 222222111111111
Q ss_pred Cccc--cccccccc--eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC------C--cEEEcCEEEEe
Q 009027 189 KGEI--WVEDILNL--GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE------G--KILSSHLIIDA 256 (546)
Q Consensus 189 ~~~l--~~~~~l~~--~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~------g--~~i~ArlVV~A 256 (546)
+..+ ..+...++ .+++..|++.|.++|.++|++++.+ +|+++..+++++.|++.+ + .+++|++||+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~A 150 (388)
T TIGR02023 72 RVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGA 150 (388)
T ss_pred CceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEEC
Confidence 1111 11111122 5899999999999999999999765 699998888888887653 2 37999999999
Q ss_pred cCCChHHHHHhcCCCCCCeeeeEEEEEeeccC------CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEE
Q 009027 257 MGNFSPVVKQIRSGRKPDGVCLVVGSCARGFK------DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (546)
Q Consensus 257 DG~~S~vr~ql~~~~~~~~~~~~vg~~~~~~~------~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l 330 (546)
||.+|.++++++.+.+.. ....+..... .+ +.+..++++. .++.+ ..|.| +||.++. ....+
T Consensus 151 dG~~S~v~r~lg~~~~~~-~~~a~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~p-----~~y~w-v~P~~~~---~~vg~ 218 (388)
T TIGR02023 151 DGANSPVAKELGLPKNLP-RVIAYQERIK-LPDDKMAYYEELADVYYG-GEVSP-----DFYGW-VFPKGDH---IAVGT 218 (388)
T ss_pred CCCCcHHHHHcCCCCCCc-EEEEEEEEec-CCchhcccCCCeEEEEEC-CCcCC-----CceEE-EeeCCCe---eEEeE
Confidence 999999999998764322 1111111110 11 1122233332 12222 46889 8998753 33333
Q ss_pred EEccCCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027 331 FTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS 410 (546)
Q Consensus 331 ~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~ 410 (546)
.... ...+.+++++.+.+.++ +. ..+..+...+.+|.. ...++..+|+++||||||+++|++|+|++.
T Consensus 219 ~~~~----~~~~~~~~~~~l~~~~~-~~-----~~~~~~~~~~~ip~~--~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~ 286 (388)
T TIGR02023 219 GTGT----HGFDAKQLQANLRRRAG-LD-----GGQTIRREAAPIPMK--PRPRWDFGRAMLVGDAAGLVTPASGEGIYF 286 (388)
T ss_pred EECC----CCCCHHHHHHHHHHhhC-CC-----CceEeeeeeEecccc--ccccccCCCEEEEeccccCcCCcccccHHH
Confidence 3221 12245566665555432 11 111122233456663 223566799999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcChhhH
Q 009027 411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVL 490 (546)
Q Consensus 411 ~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g~~~~ 490 (546)
+++++..+++.|.++++.+. ...|+.|++ ...+.|.... ...+.+-+.+..++..++.++..+...++
T Consensus 287 A~~sg~~aa~~i~~~l~~~~-----~~~L~~Y~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (388)
T TIGR02023 287 AMKSGQMAAQAIAEYLQNGD-----ATDLRHYER---KFMKLYGTTF----RVLRVLQMVYYRSDRRREVFVEMCRDKDV 354 (388)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----HHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHccCHHHHHHHHHHhccccH
Confidence 99999999999999997652 344678993 2223333332 12333444455788889999999888887
Q ss_pred HHHHHH
Q 009027 491 VDWSGH 496 (546)
Q Consensus 491 ~~w~~~ 496 (546)
.+.+..
T Consensus 355 ~~~~~~ 360 (388)
T TIGR02023 355 QRLTFD 360 (388)
T ss_pred HHhhHH
Confidence 776665
No 16
>PLN02463 lycopene beta cyclase
Probab=99.97 E-value=4.8e-29 Score=268.42 Aligned_cols=365 Identities=16% Similarity=0.157 Sum_probs=242.7
Q ss_pred CCCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027 107 AVGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (546)
Q Consensus 107 ~~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~ 185 (546)
....|||+|||| ++|+++|+.|+++|++|+|||+++....++.|.++.. .++++|+.+ ++...+....+.
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~---~l~~lgl~~------~l~~~w~~~~v~ 95 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVD---EFEALGLLD------CLDTTWPGAVVY 95 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHH---HHHHCCcHH------HHHhhCCCcEEE
Confidence 344799999995 5799999999999999999999875444444555433 466667632 222333322333
Q ss_pred ccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHHH
Q 009027 186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK 265 (546)
Q Consensus 186 f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ 265 (546)
+...........+ ..|++..|++.|.+++.+.|++++ .++|+++...++++.|++++|.+++|++||+|||.+|++.+
T Consensus 96 ~~~~~~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~ 173 (447)
T PLN02463 96 IDDGKKKDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQ 173 (447)
T ss_pred EeCCCCccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccC
Confidence 3221111111112 348999999999999998999986 57999999988899999988889999999999999998764
Q ss_pred HhcCCCCCCeeeeEEEEEeeccCCC--cee-eeeccCCcccc--------cCCCCcceEEEEecCCCCCccceEEEEEcc
Q 009027 266 QIRSGRKPDGVCLVVGSCARGFKDN--STS-DVIYSSSSVKK--------VGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (546)
Q Consensus 266 ql~~~~~~~~~~~~vg~~~~~~~~~--~~~-~i~~~~~~i~~--------~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~ 334 (546)
. .....+ ......+...+ ++.+ +.. .+++++..... ....-.++.| ++|.+++ . +++...
T Consensus 174 ~-~~~~~~-g~Q~a~Gi~~e-v~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY-~~P~~~~---~--~~vEeT 244 (447)
T PLN02463 174 Y-DKPFNP-GYQVAYGILAE-VDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLY-AMPFSSN---R--IFLEET 244 (447)
T ss_pred C-CCCCCc-cceeeeeEEee-cCCCCcccccchhhhcChhhccccchhhhccCCCCceEE-EEecCCC---e--EEEEee
Confidence 2 111111 11111122221 1100 111 11222111100 0000135677 8898865 1 221111
Q ss_pred ----CCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027 335 ----DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS 410 (546)
Q Consensus 335 ----~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~ 410 (546)
.+......+++.+.++++.++ +...++.+.+.+.||.... .+...+|+++|||||+++||.||+||..
T Consensus 245 ~l~s~~~~~~~~lk~~L~~~l~~~G------i~~~~i~~~E~~~IPmg~~--~~~~~~~~~~~G~aag~v~p~tG~~i~~ 316 (447)
T PLN02463 245 SLVARPGLPMDDIQERMVARLRHLG------IKVKSVEEDEKCVIPMGGP--LPVIPQRVLGIGGTAGMVHPSTGYMVAR 316 (447)
T ss_pred eeecCCCCCHHHHHHHHHHHHHHCC------CCcceeeeeeeeEeeCCCC--CCCCCCCEEEecchhcCcCCCccccHHH
Confidence 111111256666666665432 1223345556788999643 3445789999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhCCCCC--------hhhHHHHhhhh-------------------------------hcCchhhh
Q 009027 411 LTRHLGRLSTGVYEAVRGDFVD--------SYSLSLLNPYM-------------------------------KLGDPVLR 451 (546)
Q Consensus 411 ~lrd~~~Lae~I~~Al~~g~l~--------~~~l~~L~~Ye-------------------------------~l~~~~~~ 451 (546)
+++.+..+++.|.++++++..+ ....+.|..|+ +|+.+.++
T Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~~~~~ 396 (447)
T PLN02463 317 TLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWH 396 (447)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCHHHcc
Confidence 9999999999999999976541 21223343333 88888999
Q ss_pred HHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcChhhHHHHHHHHHH
Q 009027 452 PFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFM 499 (546)
Q Consensus 452 ~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g~~~~~~w~~~~~~ 499 (546)
.|+.++++..++..+++.++...|.-+++-+-..|..+++++++++..
T Consensus 397 gfl~~~~~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 444 (447)
T PLN02463 397 GFLSSRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQ 444 (447)
T ss_pred ccccCCCChHHHHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999998753
No 17
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=7.8e-29 Score=264.21 Aligned_cols=346 Identities=16% Similarity=0.129 Sum_probs=208.3
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (546)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~ 189 (546)
+||+|||| |+|+++|..||++|++|+||||+..+.......|+.. .|.++|+... .+........+...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~---~l~~~g~~~~-----~~~~~i~~~~~~~p~~ 72 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLC---MVDEFALPRD-----IIDRRVTKMKMISPSN 72 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---hHhhccCchh-----HHHhhhceeEEecCCc
Confidence 69999995 5799999999999999999999865432223356653 4667787532 1211111111100011
Q ss_pred cccc-----ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE---eCCeEEEEEc--C-----C--cEEEcCE
Q 009027 190 GEIW-----VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT---YENAAVLLLA--E-----G--KILSSHL 252 (546)
Q Consensus 190 ~~l~-----~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~---~~dgv~V~~~--~-----g--~~i~Arl 252 (546)
..+. .+......+++..|++.|.++|.++|++++.++ ++++.. .++.+.|++. + | .+++|++
T Consensus 73 ~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~ 151 (398)
T TIGR02028 73 IAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDA 151 (398)
T ss_pred eEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCE
Confidence 0111 011111358999999999999999999998885 766643 2345555542 1 3 3799999
Q ss_pred EEEecCCChHHHHHhcCCCCCCeeeeEEEEEeeccCC------CceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027 253 IIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKD------NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (546)
Q Consensus 253 VV~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~~~~------~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~ 326 (546)
||+|||.+|.++++++.... ..+..+....+ ++. ....++++.. .+.| .+|.| +||.++. .
T Consensus 152 VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~-~~~p-----~gY~W-ifP~~~~---~ 218 (398)
T TIGR02028 152 VIGADGANSRVAKEIDAGDY--SYAIAFQERIR-LPDEKMAYYDDLAEMYVGD-DVSP-----DFYGW-VFPKCDH---V 218 (398)
T ss_pred EEECCCcchHHHHHhCCCCc--ceEEEEEEEee-CChhhcccCCCeEEEEeCC-CCCC-----CceEE-EEECCCe---E
Confidence 99999999999999976532 22222211221 221 1223333322 2222 46899 8998853 3
Q ss_pred eEEEEEccCCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 009027 327 TTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (546)
Q Consensus 327 ~~~l~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~ 406 (546)
.+.+.... ....+.++.+.+....+. . +...+......+.+|... ..+++.+|++|||||||++||++|+
T Consensus 219 ~VG~g~~~----~~~~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~ip~~~--~~~~~~~~~llvGDAAg~v~P~tGe 288 (398)
T TIGR02028 219 AVGTGTVA----AKPEIKRLQSGIRARAAG--K--VAGGRIIRVEAHPIPEHP--RPRRVVGRVALVGDAAGYVTKCSGE 288 (398)
T ss_pred EEEEEeCC----CCccHHHHHHhhhhhhhh--c--cCCCcEEEEEEEeccccc--cccEECCCEEEEEcCCCCCCccccc
Confidence 34443221 112344433322211111 0 111112223334567642 3466789999999999999999999
Q ss_pred cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcC
Q 009027 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVG 486 (546)
Q Consensus 407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g 486 (546)
|++.+++++..+++.|.++++.|.-. .+...|+.|++ .+.+.|... +. ....+.+.+.+++..++.++..+.
T Consensus 289 GI~~A~~sg~~aa~~i~~~~~~~~~~-~~~~~l~~Y~~---~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~ 360 (398)
T TIGR02028 289 GIYFAAKSGRMCAEAIVEESRLGGAV-TEEGDLAGYLR---RWDKEYRPT-YR---VLDLLQRVFYRSNAGREAFVEMCA 360 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCc-CCHHHHHHHHH---HHHHHHHHH-HH---HHHHHHHHHcCCcHHHHHHHHHhc
Confidence 99999999999999999999876411 12334678993 122222222 22 223334445568889999999998
Q ss_pred hhhHHHHHHH
Q 009027 487 IPVLVDWSGH 496 (546)
Q Consensus 487 ~~~~~~w~~~ 496 (546)
..++.+.+..
T Consensus 361 ~~~~~~~~~~ 370 (398)
T TIGR02028 361 DEHVQKRTFD 370 (398)
T ss_pred CcchhhhhHH
Confidence 8877776665
No 18
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=3e-29 Score=268.11 Aligned_cols=309 Identities=21% Similarity=0.221 Sum_probs=189.2
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC---cccccCCHHHHHHHHHcCCCCcccchhhhhh----cc-
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATAT----KF- 179 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~---~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~----~~- 179 (546)
.+|||+|||| ++|+++|+.|+++|++|+|+||++.++. .+...+++..++.|+++|++++. ...... .+
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l--~~~~~~~~~~~~~ 94 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKI--LPQIGKFRQIRLS 94 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhh--HhhcCCccEEEEE
Confidence 3699999996 5699999999999999999999987643 24568999999999999998652 211000 00
Q ss_pred --C-CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcC-C--cEEEcCE
Q 009027 180 --N-PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAE-G--KILSSHL 252 (546)
Q Consensus 180 --~-~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~-g--~~i~Arl 252 (546)
. ...+.|... .+.. ...++.+.+..|.+.|.+++.+. |++++.+++++++..+++++.|++.+ + .+++||+
T Consensus 95 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adl 172 (415)
T PRK07364 95 DADYPGVVKFQPT-DLGT-EALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKL 172 (415)
T ss_pred eCCCCceeeeccc-cCCC-CccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeE
Confidence 0 001111110 0111 11234455557888999988776 68999999999999888888888863 2 3699999
Q ss_pred EEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceE
Q 009027 253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328 (546)
Q Consensus 253 VV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~ 328 (546)
||+|||.+|.+|++++.... +...|... .+....+ .+...+.+. ..+++| .+|.+++ ...
T Consensus 173 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~---~~~ 236 (415)
T PRK07364 173 VVAADGARSPIRQAAGIKTKGWKYWQSCVTA-TVKHEAPHNDIAYERFW-----------PSGPFA-ILPLPGN---RCQ 236 (415)
T ss_pred EEEeCCCCchhHHHhCCCceeecCCCEEEEE-EEEccCCCCCEEEEEec-----------CCCCeE-EeECCCC---CEE
Confidence 99999999999999876432 11222211 1111111 111111111 123455 6787654 233
Q ss_pred EEEEccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCC
Q 009027 329 YMFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF 405 (546)
Q Consensus 329 ~l~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg 405 (546)
.++....... ...+.+++.+.+.+.++... .++..... ...+|.......++..+|++|+|||||.++|++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G 311 (415)
T PRK07364 237 IVWTAPHAQAKALLALPEAEFLAELQQRYGDQL----GKLELLGD-RFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGG 311 (415)
T ss_pred EEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhh----cCceecCC-CceecchhhhhhhhcCCcEEEEecccccCCCccc
Confidence 3222211000 01112222222222222111 11111111 1135555444457788999999999999999999
Q ss_pred CcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 406 ~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
||+|++++|+..|++.|..+++.+. +......|+.|+
T Consensus 312 qG~n~al~DA~~La~~L~~~~~~~~-~~~~~~~L~~Y~ 348 (415)
T PRK07364 312 QGLNLGIRDAAALAQVLQTAHQRGE-DIGSLAVLKRYE 348 (415)
T ss_pred ccHhHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHH
Confidence 9999999999999999988875432 222235678999
No 19
>PRK06996 hypothetical protein; Provisional
Probab=99.97 E-value=3.6e-29 Score=266.71 Aligned_cols=311 Identities=14% Similarity=0.142 Sum_probs=190.3
Q ss_pred CCCCcccEEEEcc-hHHHHHHHHHHhCC----CeEEEEcCCCCCC---CcccccCCHHHHHHHHHcCCCCccc--chhhh
Q 009027 106 KAVGTFDVIVCGG-TLGIFIATALSFKG----LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDD--IDEAT 175 (546)
Q Consensus 106 ~~~~~yDVIIVGG-g~G~~~Aa~LA~~G----~rVlLlEr~~~~~---~~r~~~Is~~~l~~L~~lGl~~~~~--ie~~i 175 (546)
+.+.+|||+|||| ++|+++|+.|+++| ++|+|+|+.+.+. ..|...+++.+++.|+++|+|+... ++...
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~ 86 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence 3556799999996 57999999999987 5799999986543 2367789999999999999997521 11111
Q ss_pred hhcc-CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEcC
Q 009027 176 ATKF-NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSH 251 (546)
Q Consensus 176 ~~~~-~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g---~~i~Ar 251 (546)
.... ..+...|... .... ..+++.|++..|++.|.+++.+.|+++..+++++++..++++++|++.++ ++++|+
T Consensus 87 ~~~~~~~g~~~~~~~-~~~~-~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~ 164 (398)
T PRK06996 87 VSQRGHFGRTLIDRD-DHDV-PALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRAR 164 (398)
T ss_pred EecCCCCceEEeccc-ccCC-CcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeee
Confidence 1100 0112222211 1111 22467899999999999999999999999999999999999999998754 589999
Q ss_pred EEEEecCC-ChHHHHHhcCCCC---CCeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027 252 LIIDAMGN-FSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (546)
Q Consensus 252 lVV~ADG~-~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~ 326 (546)
+||+|||. .|.++++++.... +.+.+.+. .+....+ +....+.+...++ + ..+|..++....
T Consensus 165 lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~G~-----------~-~~lp~~~~~~~~ 231 (398)
T PRK06996 165 IAVQAEGGLFHDQKADAGDSARRRDYGQTAIVG-TVTVSAPRPGWAWERFTHEGP-----------L-ALLPLGGPRQAD 231 (398)
T ss_pred EEEECCCCCchHHHHHcCCCceeeecCCeEEEE-EEEccCCCCCEEEEEecCCCC-----------e-EEeECCCCCCCc
Confidence 99999997 5778888776532 22333322 1111111 1111122211111 1 134544321000
Q ss_pred eEEEEEccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCC
Q 009027 327 TTYMFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV 403 (546)
Q Consensus 327 ~~~l~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pl 403 (546)
..+++....... ...+..+..+.+.+.++.. +..+...... ..+|.......++..+||+|+|||||.+||+
T Consensus 232 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~-~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~ 306 (398)
T PRK06996 232 YALVWCCAPDEAARRAALPDDAFLAELGAAFGTR----MGRFTRIAGR-HAFPLGLNAARTLVNGRIAAVGNAAQTLHPV 306 (398)
T ss_pred EEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccc----cCceEEecce-EEEeeecccccceecCCEEEEEhhhccCCcc
Confidence 122211111000 0001122222222222110 1122111111 2466665555678889999999999999999
Q ss_pred CCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 404 sg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
+|||+|++++|+..|++.|.. .+. . ...|+.|+
T Consensus 307 ~GQG~n~ai~Da~~La~~L~~---~~~-~---~~~L~~Y~ 339 (398)
T PRK06996 307 AGQGLNLGLRDAHTLADALSD---HGA-T---PLALATFA 339 (398)
T ss_pred cchhHHHHHHHHHHHHHHHHh---cCC-c---HHHHHHHH
Confidence 999999999999999998854 222 1 23478999
No 20
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.97 E-value=1.1e-28 Score=260.49 Aligned_cols=307 Identities=19% Similarity=0.189 Sum_probs=195.2
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCCcccchhhhhhcc-----
Q 009027 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKF----- 179 (546)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~------~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~----- 179 (546)
||+|||| ++|+++|..|+++|++|+|+||++.++. .+...++++.++.|+++|++++. .+......
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~--~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKI--EPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhh--hhhcCCCceEEEE
Confidence 8999996 5699999999999999999999998753 25578999999999999998642 22011111
Q ss_pred -CCC---cccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 009027 180 -NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (546)
Q Consensus 180 -~~~---~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV 254 (546)
... .+.+... .. .....++.+++..|.+.|.+.+.+.| ++++.+++|+++..+++++.|++++|++++|++||
T Consensus 79 ~~~~~~~~~~~~~~-~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi 156 (385)
T TIGR01988 79 SDGGSFGALHFDAD-EI-GLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLV 156 (385)
T ss_pred EeCCCCceEEechh-hc-CCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEE
Confidence 010 0111100 00 01123467899999999999999888 89999999999998888999998888899999999
Q ss_pred EecCCChHHHHHhcCCCCC---CeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027 255 DAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (546)
Q Consensus 255 ~ADG~~S~vr~ql~~~~~~---~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~ 331 (546)
+|||.+|.+|++++...+. ...+.+. ......+........ .. ..+.+| .+|..++ ...+.+
T Consensus 157 ~adG~~S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~-----~~g~~~-~~p~~~~---~~~~~~ 221 (385)
T TIGR01988 157 GADGANSKVRQLAGIPTTGWDYGQSAVVA-NVKHERPHQGTAWER-----FT-----PTGPLA-LLPLPDN---RSSLVW 221 (385)
T ss_pred EeCCCCCHHHHHcCCCccccccCCeEEEE-EEEecCCCCCEEEEE-----ec-----CCCCEE-EeECCCC---CeEEEE
Confidence 9999999999998754321 1222211 111001110010000 00 123455 5787764 333333
Q ss_pred EccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027 332 TYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (546)
Q Consensus 332 ~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~ 408 (546)
...+... ...+.+++.+.+.+.++... .++.... ....+|.......++..+||+|+|||||.++|++|+|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~ 296 (385)
T TIGR01988 222 TLPPEEAERLLALSDEEFLAELQRAFGSRL----GAITLVG-ERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGL 296 (385)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhhc----CceEecc-CcceeechhhhhhheecCceEEEecccccCCccccchh
Confidence 3221100 01122333333333332211 1111111 12345665444456778999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 409 g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
+++++|+..|++.|..++..+. +......|+.|+
T Consensus 297 ~~Ai~da~~La~~L~~~~~~~~-~~~~~~~l~~y~ 330 (385)
T TIGR01988 297 NLGLRDVAALAEVLEDARRRGE-DIGSPRVLQRYE 330 (385)
T ss_pred hhhHHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHH
Confidence 9999999999999998876431 111234568898
No 21
>PRK08244 hypothetical protein; Provisional
Probab=99.97 E-value=4.4e-28 Score=265.39 Aligned_cols=303 Identities=20% Similarity=0.247 Sum_probs=194.9
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhh--hh--ccC--C
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEAT--AT--KFN--P 181 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i--~~--~~~--~ 181 (546)
+|||+|||| ++|+++|+.|+++|++|+||||++.+.. .+...+++++++.|+++|++++ +.+.- .. .+. .
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~--l~~~~~~~~~~~~~~~~ 79 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLER--FLEKGRKLPSGHFAGLD 79 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHH--HHhhcccccceEEeccc
Confidence 589999995 5799999999999999999999987643 4667899999999999999753 21110 00 000 0
Q ss_pred CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc--CC-cEEEcCEEEEecC
Q 009027 182 NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG-KILSSHLIIDAMG 258 (546)
Q Consensus 182 ~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--~g-~~i~ArlVV~ADG 258 (546)
..+.|. ....+..+.+.+++..+++.|.+++.+.|++++.+++++++.+++++++|++. +| ++++|++||+|||
T Consensus 80 ~~~~~~---~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG 156 (493)
T PRK08244 80 TRLDFS---ALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADG 156 (493)
T ss_pred ccCCcc---cCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCC
Confidence 011111 01111223456899999999999999899999999999999999999888775 35 4799999999999
Q ss_pred CChHHHHHhcCCCC---CCeeeeEEEEEe-eccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEcc
Q 009027 259 NFSPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (546)
Q Consensus 259 ~~S~vr~ql~~~~~---~~~~~~~vg~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~ 334 (546)
.+|.+|+++++..+ +...+. ++... ...+.......+ . ..+.+| ++|..++ ...+.+...
T Consensus 157 ~~S~vR~~lgi~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~------~-----~~g~~~-~~P~~~~---~~~~~~~~~ 220 (493)
T PRK08244 157 AGSIVRKQAGIAFPGTDATFTAM-LGDVVLKDPPPSSVLSLC------T-----REGGVM-IVPLSGG---IYRVLIIDP 220 (493)
T ss_pred CChHHHHhcCCCccCCCcceEEE-EEEEEecCCCCcceeEEE------e-----CCceEE-EEECCCC---eEEEEEEcC
Confidence 99999999976532 222221 11111 111111111111 0 123455 6787754 333333221
Q ss_pred CCC--C--CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027 335 DPQ--A--GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS 410 (546)
Q Consensus 335 ~~~--~--~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~ 410 (546)
... . ...+.+++.+.+.+.++..-. .....+ ...++.......++..+||+|+|||||.++|++|||+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~----~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~ 294 (493)
T PRK08244 221 ERPQVPKDEPVTLEELKTSLIRICGTDFG--LNDPVW----MSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNV 294 (493)
T ss_pred CcccccCCCCCCHHHHHHHHHHhhCCCCC--cCCeeE----EEecccceeeHhhhccCcEEEeecceeccCCcccccccc
Confidence 110 1 112555655555444332111 111111 112343333344677899999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 411 ~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
+++|+..|+..|..+++. . + .-..|+.|+
T Consensus 295 gi~DA~~La~~La~~l~g-~-~--~~~lL~~Ye 323 (493)
T PRK08244 295 GLQDAMNLGWKLAAAIKG-W-A--PDWLLDSYH 323 (493)
T ss_pred chhhHHHHHHHHHHHHcC-C-C--CchhhhhhH
Confidence 999999999999988853 2 1 224578899
No 22
>PRK09126 hypothetical protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=261.86 Aligned_cols=311 Identities=21% Similarity=0.217 Sum_probs=191.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCCcccchhh-hhhc---
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEA-TATK--- 178 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~------~r~~~Is~~~l~~L~~lGl~~~~~ie~~-i~~~--- 178 (546)
+|||+||||| +|+++|+.|+++|++|+|+||.+.++. .+...+++..++.|+++|+++...-... ....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 5899999965 699999999999999999999987531 2345688999999999999764211000 0000
Q ss_pred cC---CCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 009027 179 FN---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (546)
Q Consensus 179 ~~---~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV 254 (546)
+. ...+.|.... .....+++.+++..+++.|.+++.+ .|++++.+++|+++..+++++.|++++|++++||+||
T Consensus 83 ~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 83 LNGRSPFALTFDARG--RGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLV 160 (392)
T ss_pred EcCCCCceeEeehhh--cCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEE
Confidence 00 0111221100 0112245668888999999998864 6899999999999998888888988888899999999
Q ss_pred EecCCChHHHHHhcCCCCCC---eeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027 255 DAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (546)
Q Consensus 255 ~ADG~~S~vr~ql~~~~~~~---~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~ 331 (546)
+|||.+|.+|+++++..... ..+. +.......++.......+ + ..+.+| .||..++ ...+.+
T Consensus 161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~-~~~~~~-~~P~~~~---~~~~~~ 225 (392)
T PRK09126 161 AADSRFSATRRQLGIGADMHDFGRTML-VCRMRHELPHHHTAWEWF---------G-YGQTLA-LLPLNGH---LSSLVL 225 (392)
T ss_pred EeCCCCchhhHhcCCCccccccCCeEE-EEEEeccCCCCCEEEEEe---------c-CCCCeE-EeECCCC---CEEEEE
Confidence 99999999999997654221 1121 111111111111000000 1 123455 6787754 334333
Q ss_pred EccCCCCC---CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027 332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (546)
Q Consensus 332 ~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~ 408 (546)
........ ..+.+++.+.+...++.. +........ ...+|.......++..+|++|+|||||.++|++|||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~ 300 (392)
T PRK09126 226 TLPPDQIEALLALDPEAFAAEVTARFKGR----LGAMRLVSS-RHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGF 300 (392)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCC-CcEeechHHHHHHHhhcceEEEehhhhcCCCcccchh
Confidence 33211000 011122222221212111 011111111 1234444333446778999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 409 g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|++++|+..|++.|..+++.+. +....+.|+.|+
T Consensus 301 ~~ai~da~~la~~L~~~~~~~~-~~~~~~~l~~Y~ 334 (392)
T PRK09126 301 NLGLKGQDILARLILAAARRGQ-DIGAASLLERYE 334 (392)
T ss_pred hhhHHHHHHHHHHHHHHHhcCC-CCccHHHHHHHH
Confidence 9999999999999998886432 111234577899
No 23
>PRK06834 hypothetical protein; Provisional
Probab=99.97 E-value=8.3e-28 Score=262.46 Aligned_cols=304 Identities=20% Similarity=0.237 Sum_probs=194.4
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC--CcccccCCHHHHHHHHHcCCCCcccchhhhh-hc-cCCCcc
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG--REQEWNISRKELLELVESGILVEDDIDEATA-TK-FNPNRC 184 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~--~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~-~~-~~~~~v 184 (546)
++||+|||| ++|+++|+.|+++|++|+||||.+.+. ..+...+++++++.|+.+|++++ +.+... .. ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~--l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADR--FLAQGQVAQVTGFAAT 80 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHH--HHhcCCccccceeeeE
Confidence 589999995 579999999999999999999988654 23566899999999999999864 211100 00 000011
Q ss_pred cccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 185 ~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
.+.. ..+..+..+++.+.+..+++.|.+++.+.|++++.+++++++..+++++.|++.+|++++|++||+|||.+|.+|
T Consensus 81 ~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 81 RLDI-SDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred eccc-ccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 1110 111222234567888999999999999999999999999999999999999987788999999999999999999
Q ss_pred HHhcCCCC---CCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCC-CCCccceEEEEEccCCCC-C
Q 009027 265 KQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAG-SGPLDRTTYMFTYIDPQA-G 339 (546)
Q Consensus 265 ~ql~~~~~---~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~-~g~~~~~~~l~~~~~~~~-~ 339 (546)
+++++..+ +...+.++... .+......... . ..+.+. .+|.. ++ ...+++....... .
T Consensus 160 ~~lgi~~~g~~~~~~~~~~dv~---~~~~~~~~~~~-----~-----~~g~~~-~~~~~~~~---~~~~~~~~~~~~~~~ 222 (488)
T PRK06834 160 KAAGIDFPGWDPTTSYLIAEVE---MTEEPEWGVHR-----D-----ALGIHA-FGRLEDEG---PVRVMVTEKQVGATG 222 (488)
T ss_pred hhcCCCCCCCCcceEEEEEEEE---ecCCCCcceee-----C-----CCceEE-EeccCCCC---eEEEEEecCCCCCCC
Confidence 99986532 22222221111 11000000000 0 112222 23433 22 2222222111111 1
Q ss_pred CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHH
Q 009027 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419 (546)
Q Consensus 340 ~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~La 419 (546)
..+.+++.+.+.+.++.- .......+. ..++.....+.++..+||+|+|||||.++|+.|||+|++++|+..|+
T Consensus 223 ~~~~~~~~~~l~~~~g~~--~~~~~~~~~----~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLa 296 (488)
T PRK06834 223 EPTLDDLREALIAVYGTD--YGIHSPTWI----SRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLG 296 (488)
T ss_pred CCCHHHHHHHHHHhhCCC--CccccceeE----EeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHH
Confidence 224455544444433311 111111111 23444434456788999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCChhhHHHHhhhh
Q 009027 420 TGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 420 e~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
..|...++.. + .-..|..|+
T Consensus 297 wkLa~vl~g~--~--~~~lLd~Ye 316 (488)
T PRK06834 297 WKLAQVVKGT--S--PESLLDTYH 316 (488)
T ss_pred HHHHHHHcCC--C--cHHHHHHHH
Confidence 9988887632 1 235678999
No 24
>PRK10015 oxidoreductase; Provisional
Probab=99.97 E-value=3.6e-28 Score=261.39 Aligned_cols=320 Identities=17% Similarity=0.178 Sum_probs=194.2
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc--cccCCHHHHHHHHHcCCCCcccchhhhhhc---c--C
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATK---F--N 180 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r--~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~---~--~ 180 (546)
.+|||||||| ++|+++|+.||++|++|+||||.++++.+. ...++...++.+.. ++.....++..+... + .
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEEEeC
Confidence 4699999996 579999999999999999999999887652 22344444444321 332211122211110 0 0
Q ss_pred --CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027 181 --PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (546)
Q Consensus 181 --~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG 258 (546)
...+.|... ....+..-++.|+|..|+++|.+++++.|++++.+++|+++..+++.+.+...++.+++|++||+|||
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG 161 (429)
T PRK10015 83 ESAVTLDFHRE-QPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG 161 (429)
T ss_pred CCceEeecccC-CCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence 011122111 11111122578999999999999999999999999999999877777653333556899999999999
Q ss_pred CChHHHHHhcCCCC--CCeeeeEEEEEeeccCCCceeeeec----------cCCcccccCCCCcceEEEEecCCCCCccc
Q 009027 259 NFSPVVKQIRSGRK--PDGVCLVVGSCARGFKDNSTSDVIY----------SSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (546)
Q Consensus 259 ~~S~vr~ql~~~~~--~~~~~~~vg~~~~~~~~~~~~~i~~----------~~~~i~~~~~~~~~~~W~~fp~~~g~~~~ 326 (546)
.+|.++++++.... +..+...+.... .++.....+.+. ..+... ++..++.| +|+..+. .
T Consensus 162 ~~s~v~~~lg~~~~~~~~~~~~gvk~~~-~~~~~~i~~~~~~~~~~g~~w~~~g~~~---~g~~g~G~-~~~~~d~---v 233 (429)
T PRK10015 162 VNSMLGRSLGMVPASDPHHYAVGVKEVI-GLTPEQINDRFNITGEEGAAWLFAGSPS---DGLMGGGF-LYTNKDS---I 233 (429)
T ss_pred cchhhhcccCCCcCCCcCeEEEEEEEEE-eCCHHHhhHhhcCCCCCCeEEEecCccC---CCCCCceE-EEEcCCc---E
Confidence 99999999876432 222222221111 122110001110 000000 00112334 4555432 4
Q ss_pred eEEEEEcc-CCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCC--
Q 009027 327 TTYMFTYI-DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSP-- 402 (546)
Q Consensus 327 ~~~l~~~~-~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~P-- 402 (546)
..++.... .......++.+++++|. ..|.++.. ++..+........+|.... ...+.+.+|+++|||||+++||
T Consensus 234 ~vGv~~~~~~~~~~~~~~~~~l~~~~-~~p~~~~~-~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~ 311 (429)
T PRK10015 234 SLGLVCGLGDIAHAQKSVPQMLEDFK-QHPAIRPL-ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLG 311 (429)
T ss_pred EEEEEEehhhhccCCCCHHHHHHHHh-hChHHHHH-hcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccC
Confidence 44443322 11112347788888874 55555442 2222333333456776532 2236789999999999999995
Q ss_pred CCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 403 lsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
+++.|++.++..+...|+.|.+|++.++.+...| +.|+
T Consensus 312 ~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l---~~Y~ 349 (429)
T PRK10015 312 FTVRGMDLAIASAQAAATTVIAAKERADFSASSL---AQYK 349 (429)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCccccH---HHHH
Confidence 5999999999999989999999999877665554 6788
No 25
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.97 E-value=1.7e-29 Score=261.80 Aligned_cols=310 Identities=21% Similarity=0.221 Sum_probs=182.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
+|||+||||| +|+++|+.|+++|++|+|+||++.+... +...+++.+++.|+++|+++. +..... ........+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--~~~~~~-~~~~~~~~~~ 77 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDE--ILARGS-PHEVMRIFFY 77 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHH--HHHHSE-EECEEEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhh--hhhhcc-cccceeeEee
Confidence 3899999965 6999999999999999999999877543 456789999999999998753 211110 0000000000
Q ss_pred CC--------------ccc--cccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---C--c
Q 009027 188 GK--------------GEI--WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--K 246 (546)
Q Consensus 188 ~~--------------~~l--~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g--~ 246 (546)
.. ..+ ..+......+++..|++.|.+.+.+.|++++.+++++++..+++++++.+.+ | +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~ 157 (356)
T PF01494_consen 78 DGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEE 157 (356)
T ss_dssp EETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEE
T ss_pred cccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCcee
Confidence 00 000 1112223568999999999999999999999999999999999998776643 3 2
Q ss_pred EEEcCEEEEecCCChHHHHHhcCCCCCCeee---eEEEEEee-ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCC
Q 009027 247 ILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC---LVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG 322 (546)
Q Consensus 247 ~i~ArlVV~ADG~~S~vr~ql~~~~~~~~~~---~~vg~~~~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g 322 (546)
+++||+||+|||.+|.+|++++...+....+ ...+.... .+++......+... . ..+.+| .+|..+.
T Consensus 158 ~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~-~~p~~~~ 228 (356)
T PF01494_consen 158 TIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYS---P-----PSGGFA-IIPLENG 228 (356)
T ss_dssp EEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEE---E-----TTEEEE-EEEETTT
T ss_pred EEEEeeeecccCcccchhhhccccccCcccccccccccccccccccccccccccccc---c-----ccccee-EeeccCC
Confidence 7999999999999999999997552211111 11111111 11110000111110 0 123334 6776652
Q ss_pred CccceEEEEEc--cCCCCCC--c-cHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCC
Q 009027 323 PLDRTTYMFTY--IDPQAGS--P-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDAS 397 (546)
Q Consensus 323 ~~~~~~~l~~~--~~~~~~~--~-~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA 397 (546)
....+++.. ....... . ..+++++.+....... .. ...... ...+|.......++..+||+||||||
T Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~--~~~~~~~~~~~~~~~~grv~LiGDAA 300 (356)
T PF01494_consen 229 --DRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPD-LL---ETEIDE--ISAWPIPQRVADRWVKGRVLLIGDAA 300 (356)
T ss_dssp --TEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTC-HH---HHEEEE--EEEEEEEEEEESSSEETTEEE-GGGT
T ss_pred --ccceEEEeeecccccccccccccccccccccccccccc-cc---cccccc--ccccccccccccccccceeEEeccce
Confidence 122222222 2111111 1 2223332222211110 00 111111 11233333233467779999999999
Q ss_pred CCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 398 GIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 398 ~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|.++|++|+|+|.++.|+..|++.|..+++ |. . .-+.|+.|+
T Consensus 301 h~~~P~~GqG~n~Ai~da~~La~~L~~~~~-g~-~--~~~~l~~Y~ 342 (356)
T PF01494_consen 301 HAMDPFSGQGINMAIEDAAALAELLAAALK-GE-A--SEEALKAYE 342 (356)
T ss_dssp EEE-CCTSHHHHHHHHHHHHHHHHHHHHHT-TS-S--HHHHHHHHH
T ss_pred eeecccccCCCCcccccHHHHHHHHHHHhc-CC-c--HHHHHHHHH
Confidence 999999999999999999999999998876 32 2 234578999
No 26
>PLN02697 lycopene epsilon cyclase
Probab=99.96 E-value=9e-27 Score=254.64 Aligned_cols=360 Identities=15% Similarity=0.155 Sum_probs=230.1
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
..|||+|||| ++|+++|+.|+++|++|+|||+..... ..|+++..+ +.++|+. .++...+....+.+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~--~n~GvW~~~---l~~lgl~------~~i~~~w~~~~v~~~ 175 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDE---FKDLGLE------DCIEHVWRDTIVYLD 175 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC--CccccchhH---HHhcCcH------HHHHhhcCCcEEEec
Confidence 3699999995 579999999999999999999863322 235666543 5566652 223333433333333
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEE-EEcCCcEEEcCEEEEecCCChHHHHH
Q 009027 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFSPVVKQ 266 (546)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V-~~~~g~~i~ArlVV~ADG~~S~vr~q 266 (546)
....+.....+ ..|++..|++.|.+++.+.|+++ .+++|+++..+++++.+ .+.+|.+++|++||+|||.+|. +.
T Consensus 176 ~~~~~~~~~~Y-g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~--rl 251 (529)
T PLN02697 176 DDKPIMIGRAY-GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG--RL 251 (529)
T ss_pred CCceeeccCcc-cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh--hh
Confidence 22222221111 24899999999999999999998 67899999887777654 4567789999999999999994 22
Q ss_pred hcCC--CC--CCeeeeEEEEEee--ccC-CCceeeeeccCCcc----c-ccCCCCcceEEEEecCCCCCccceEEE-EEc
Q 009027 267 IRSG--RK--PDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSV----K-KVGDSEVQLFWEAFPAGSGPLDRTTYM-FTY 333 (546)
Q Consensus 267 l~~~--~~--~~~~~~~vg~~~~--~~~-~~~~~~i~~~~~~i----~-~~~~~~~~~~W~~fp~~~g~~~~~~~l-~~~ 333 (546)
+... .+ ..+.+ .|...+ ..+ +.+. .+++++... . ........++| ++|.+++ ..++ .++
T Consensus 252 ~~~~~~~~~~~~Q~a--~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlY-vlP~~~~----~~~VE~T~ 323 (529)
T PLN02697 252 LQYEVGGPRVCVQTA--YGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLY-AMPMSST----RVFFEETC 323 (529)
T ss_pred hccccCCCCcccEEE--EEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEE-EeecCCC----eEEEEEee
Confidence 2211 11 11222 222221 111 1121 234332211 0 01112346778 8999864 2222 221
Q ss_pred c-C-CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhh
Q 009027 334 I-D-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (546)
Q Consensus 334 ~-~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~ 411 (546)
. . +......+++.+.+|++..+ + ...++.+.++|.+|+... .+...+++++|||||+++||.||+||..+
T Consensus 324 l~~~~~l~~~~l~~~L~~~l~~~G-i-----~~~~i~~~E~g~iPm~g~--~~~~~~~vl~vG~AAG~vhPsTGy~v~~~ 395 (529)
T PLN02697 324 LASKDAMPFDLLKKRLMSRLETMG-I-----RILKTYEEEWSYIPVGGS--LPNTEQKNLAFGAAASMVHPATGYSVVRS 395 (529)
T ss_pred eccCCCCCHHHHHHHHHHHHHhCC-C-----CcceEEEEEeeeecCCCC--CcccCCCeeEeehhhcCCCCchhhhHHHH
Confidence 1 1 11112356666777776542 2 233445667889999653 22237899999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhCCC---C-Ch--hhHHHHhhhh-------------------------------------hcCch
Q 009027 412 TRHLGRLSTGVYEAVRGDF---V-DS--YSLSLLNPYM-------------------------------------KLGDP 448 (546)
Q Consensus 412 lrd~~~Lae~I~~Al~~g~---l-~~--~~l~~L~~Ye-------------------------------------~l~~~ 448 (546)
++.+..+|+.|.++++.+. . +. .....++.|+ +|+++
T Consensus 396 l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~~l~~~~~~~ff~~ff~L~~~ 475 (529)
T PLN02697 396 LSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKW 475 (529)
T ss_pred HHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH
Confidence 9999999999999998774 0 00 1122334454 77778
Q ss_pred hhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHh--cChhhHHHHHHHHHH
Q 009027 449 VLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ--VGIPVLVDWSGHFFM 499 (546)
Q Consensus 449 ~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~--~g~~~~~~w~~~~~~ 499 (546)
+++.|+.+.++..++..+++.++...|.-+.+-+-. .+.....+.+++|..
T Consensus 476 ~~~~Fl~~~l~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 528 (529)
T PLN02697 476 MWQGFLGSTLSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYLT 528 (529)
T ss_pred HHhhHhhccCCHHHHHHHHHHHHHhCChhHHHHHHHhhcCCchHhHHHHHhhc
Confidence 888888888888888889999988888877654433 444666777777754
No 27
>PRK07190 hypothetical protein; Provisional
Probab=99.96 E-value=3.4e-27 Score=257.45 Aligned_cols=308 Identities=16% Similarity=0.163 Sum_probs=196.4
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhh---hccCCCc
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNPNR 183 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~---~~~~~~~ 183 (546)
..+||+|||| ++|+++|+.|+++|++|+||||.+.+.. .++..+++.+++.|+.+|++++..-..... ..+....
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~ 83 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGK 83 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCc
Confidence 3689999995 5799999999999999999999987643 345578999999999999975321000000 0011111
Q ss_pred -ccccC--Ccccc-ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027 184 -CGFEG--KGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (546)
Q Consensus 184 -v~f~~--~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~ 259 (546)
+.... ...+. ......+.+.+..+++.|.+++.+.|++++.+++|+++.++++++++.+.+|++++|++||+|||.
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCC
Confidence 00000 00000 111122457888999999999999999999999999999999999888878889999999999999
Q ss_pred ChHHHHHhcCCCCC---CeeeeEEEE-EeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccC
Q 009027 260 FSPVVKQIRSGRKP---DGVCLVVGS-CARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID 335 (546)
Q Consensus 260 ~S~vr~ql~~~~~~---~~~~~~vg~-~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~ 335 (546)
+|.+|++++++.+. ......+.. ....+++... ...+. . + ...++| +|..++ ...++....
T Consensus 164 ~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~-~~~~~-~---~----~g~~~~--~p~~~~---~~r~~~~~~- 228 (487)
T PRK07190 164 RSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPE-IIVFQ-A---E----TSDVAW--IPREGE---IDRFYVRMD- 228 (487)
T ss_pred CHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcc-eEEEE-c---C----CCCEEE--EECCCC---EEEEEEEcC-
Confidence 99999999876432 111111111 1111211000 00010 0 0 234555 565543 232222221
Q ss_pred CCCCCccHHHHHHHHHHhCccccccccCcceEeeee-eeeeccccCCCCCcc-CCcEEEeCCCCCCCCCCCCCcchhhHh
Q 009027 336 PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVI-YGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTR 413 (546)
Q Consensus 336 ~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~-~g~~P~~~~~~~~~~-~~rvlLVGDAA~~v~Plsg~G~g~~lr 413 (546)
....+.+++.+...+.+... ++.+.... ...||.......++. .+||+|+|||||.++|..|||+|++++
T Consensus 229 --~~~~t~~~~~~~l~~~~~~~------~~~~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giq 300 (487)
T PRK07190 229 --TKDFTLEQAIAKINHAMQPH------RLGFKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLA 300 (487)
T ss_pred --CCCCCHHHHHHHHHHhcCCC------CCceEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHH
Confidence 11234555555444323111 11122221 134566655566775 799999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 414 HLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 414 d~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|+..|+..|...++.. + .-..|..|+
T Consensus 301 DA~nL~wkLa~v~~g~--a--~~~lLdtY~ 326 (487)
T PRK07190 301 DAFNLIWKLNMVIHHG--A--SPELLQSYE 326 (487)
T ss_pred HHHHHHHHHHHHHcCC--C--cHHHHHHHH
Confidence 9999999998877643 2 245678999
No 28
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.96 E-value=9.5e-28 Score=253.69 Aligned_cols=306 Identities=18% Similarity=0.198 Sum_probs=187.4
Q ss_pred cEEEEcc-hHHHHHHHHHHhCC-CeEEEEcCCCCCCCc-----ccccCCHHHHHHHHHcCCCCcccchhhhhhcc---CC
Q 009027 112 DVIVCGG-TLGIFIATALSFKG-LRVAIVERNTLKGRE-----QEWNISRKELLELVESGILVEDDIDEATATKF---NP 181 (546)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LA~~G-~rVlLlEr~~~~~~~-----r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~---~~ 181 (546)
||+|||| ++|+++|+.|+++| ++|+|+||.+.++.. +...+++++++.|+++|+++...-........ ..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 8999996 56999999999999 999999999876542 44679999999999999986421000000000 00
Q ss_pred ---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEec
Q 009027 182 ---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (546)
Q Consensus 182 ---~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~AD 257 (546)
..+.+.. ..... ...++.+++..|++.|.+++.+. |++++.+++|+++..++++++|++++|.+++||+||+||
T Consensus 81 ~~~~~~~~~~-~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRA-SEFGL-PALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEech-hhcCC-CccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence 0011110 00011 12346799999999999999884 899999999999998889999998888899999999999
Q ss_pred CCChHHHHHhcCCCCC---CeeeeEEEEEeeccCC-CceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEc
Q 009027 258 GNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY 333 (546)
Q Consensus 258 G~~S~vr~ql~~~~~~---~~~~~~vg~~~~~~~~-~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~ 333 (546)
|.+|.+++++++.... .+.+.... +....+. ......+. ..+.++ .+|..++. ...+.+..
T Consensus 159 G~~S~vr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~~--~~~~~~~~ 223 (382)
T TIGR01984 159 GANSKVRELLSIPTEEHDYNQTALIAN-IRHEQPHQGCAFERFT-----------PHGPLA-LLPLKDNY--RSSLVWCL 223 (382)
T ss_pred CCChHHHHHcCCCCcccccCCEEEEEE-EEecCCCCCEEEEeeC-----------CCCCeE-ECcCCCCC--CEEEEEEC
Confidence 9999999999765322 12222211 1111111 10001110 112233 46766441 22222222
Q ss_pred cCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027 334 IDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS 410 (546)
Q Consensus 334 ~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~ 410 (546)
..... ...+.++..+.+.+.++.. +..+...... ..+|.......++..+||+|+|||||.++|++|+|+|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ 298 (382)
T TIGR01984 224 PSKQADTIANLPDAEFLAELQQAFGWR----LGKITQVGER-KTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNL 298 (382)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCCc-cEeecchhhhhheecCCEEEEeecccccCCccccchhh
Confidence 11000 0011222223222222110 1111111111 23455433344667799999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 411 ~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
+++|+..|++.|..++. + ...-..|+.|+
T Consensus 299 al~Da~~La~~L~~~~~-~---~~~~~~l~~Y~ 327 (382)
T TIGR01984 299 GLRDVETLAEVLIDARI-D---LGTYALLQEYL 327 (382)
T ss_pred hHHHHHHHHHHHHHhcc-C---ccCHHHHHHHH
Confidence 99999999999887652 1 11234568899
No 29
>PRK07045 putative monooxygenase; Reviewed
Probab=99.96 E-value=3.5e-27 Score=250.36 Aligned_cols=311 Identities=15% Similarity=0.157 Sum_probs=187.8
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc-
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF- 186 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f- 186 (546)
.+||+|||| ++|+++|+.|+++|++|+|+||++.++.. +...|++..++.|+++|+++.. .+...... ..+.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~--~~~~~~~~--~~~~~~ 80 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDV--FAAGGLRR--DAMRLY 80 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHH--Hhcccccc--cceEEe
Confidence 689999996 56999999999999999999999877532 3345899999999999998642 11100000 00111
Q ss_pred cCCcc---ccc----cccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEcCEEEEe
Q 009027 187 EGKGE---IWV----EDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDA 256 (546)
Q Consensus 187 ~~~~~---l~~----~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv--~V~~~~g~~i~ArlVV~A 256 (546)
..+.. +.. +....+.+++..|.+.|.+++.. .|++++.+++++++..+++++ .|++++|++++|++||+|
T Consensus 81 ~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgA 160 (388)
T PRK07045 81 HDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA 160 (388)
T ss_pred cCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEEC
Confidence 11110 000 01112457899999999999865 578999999999999877764 577778889999999999
Q ss_pred cCCChHHHHHh-cCCC---CCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE
Q 009027 257 MGNFSPVVKQI-RSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (546)
Q Consensus 257 DG~~S~vr~ql-~~~~---~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~ 332 (546)
||.+|.+|+++ +... ++...+. .+.....-........++. ...+++| .+|..++ .....+.
T Consensus 161 DG~~S~vR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~p~~~~---~~~~~~~ 226 (388)
T PRK07045 161 DGARSMIRDDVLRMPAERVPYATPMA-FGTIALTDSVRECNRLYVD---------SNQGLAY-FYPIGDQ---ATRLVVS 226 (388)
T ss_pred CCCChHHHHHhhCCCcccCCCCccee-EEEEeccCCccccceEEEc---------CCCceEE-EEEcCCC---cEEEEEE
Confidence 99999999975 4332 1222221 1222110000011111111 1235566 6787644 2333332
Q ss_pred ccCCCCC---C-ccHHHHHHHHHHhC-ccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 009027 333 YIDPQAG---S-PKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (546)
Q Consensus 333 ~~~~~~~---~-~~l~~l~~~~~~~l-p~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G 407 (546)
+...... . ...+++.+.+.+.+ +..... ++.... ...+..+|.......++..+||+|||||||.++|++|+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG 304 (388)
T PRK07045 227 FPADEMQGYLADTTRTKLLARLNEFVGDESADA-MAAIGA-GTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQG 304 (388)
T ss_pred eccccchhccCCCCHHHHHHHHhhhcCccchHH-HhccCc-ccccceeecCccccccccCCCEEEEEccccccCCCcccc
Confidence 2211110 0 12223322222222 111110 111110 111223454433344677899999999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 408 ~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
.|++++|+..|++.|..++..+. ..-..|+.|+
T Consensus 305 ~n~ai~Da~~La~~L~~~~~~~~---~~~~~L~~Ye 337 (388)
T PRK07045 305 MNLAIEDAGELGACLDLHLSGQI---ALADALERFE 337 (388)
T ss_pred HHHHHHHHHHHHHHHHhhcCCch---hHHHHHHHHH
Confidence 99999999999999988764321 1234678899
No 30
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.96 E-value=3.1e-27 Score=250.23 Aligned_cols=306 Identities=20% Similarity=0.171 Sum_probs=189.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCCcccchhhhhhcc-CC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKF-NP 181 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~------~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~-~~ 181 (546)
.+||+||||| +|+++|+.|++.|++|+|+||++.++. .+...+++.+++.|+.+|++++. +. ..+ ..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~--~~---~~~~~~ 79 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQAL--DA---ARLAPV 79 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhh--hh---hcCCcc
Confidence 6899999965 699999999999999999999987643 12346889999999999998642 11 011 00
Q ss_pred CcccccCC--ccccc------cccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCE
Q 009027 182 NRCGFEGK--GEIWV------EDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (546)
Q Consensus 182 ~~v~f~~~--~~l~~------~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~Arl 252 (546)
..+.+.+. ..+.. .....+.+++..|++.|.+++.+.| ++++ +++++++..+++++.|++++|++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 158 (388)
T PRK07608 80 YDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADL 158 (388)
T ss_pred eEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeE
Confidence 11111110 00110 0112456899999999999999888 7888 9999999888889999988888899999
Q ss_pred EEEecCCChHHHHHhcCCCCC---CeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027 253 IIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (546)
Q Consensus 253 VV~ADG~~S~vr~ql~~~~~~---~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~ 329 (546)
||+|||.+|.+++.++..... .+.+.++.. + .+.......+... . ..+++| .+|..++ ....
T Consensus 159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~---~-----~~~~~~-~~p~~~~---~~~~ 223 (388)
T PRK07608 159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANF--K-AERPHRGTAYQWF---R-----DDGILA-LLPLPDG---HVSM 223 (388)
T ss_pred EEEeCCCCchHHHhcCCCccccccCCEEEEEEE--E-ecCCCCCEEEEEe---c-----CCCCEE-EeECCCC---CeEE
Confidence 999999999999998765322 222221111 1 0100000000000 0 134455 5787755 2222
Q ss_pred EEEccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 009027 330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (546)
Q Consensus 330 l~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~ 406 (546)
.+....... ...+.+++.+.+....+.. +..+...... ..+|.......++..+|++|||||||.++|++||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~Gq 298 (388)
T PRK07608 224 VWSARTAHADELLALSPEALAARVERASGGR----LGRLECVTPA-AGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQ 298 (388)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHHHHh----cCCceecCCc-ceeecchhhhhhhhcCceEEEeccccccCCcccc
Confidence 222211000 0111122222222222110 1112111111 1245543334467789999999999999999999
Q ss_pred cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|+|++++|+..|++.|..+...+.. .....|+.|+
T Consensus 299 G~n~ai~da~~La~~L~~~~~~~~~--~~~~~l~~Ye 333 (388)
T PRK07608 299 GMNLGLRDVAALADVLAGREPFRDL--GDLRLLRRYE 333 (388)
T ss_pred ccchhHHHHHHHHHHHHHhhccCCC--ccHHHHHHHH
Confidence 9999999999999999776432221 2235678999
No 31
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.96 E-value=4.4e-27 Score=253.05 Aligned_cols=320 Identities=14% Similarity=0.201 Sum_probs=190.6
Q ss_pred CCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc--cccCCHHHHHHHHHcCCCCcccchhhhhhc---c--
Q 009027 108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATK---F-- 179 (546)
Q Consensus 108 ~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r--~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~---~-- 179 (546)
+++|||||||| ++|+++|+.||++|++|+||||+.+|+.+. ...++...++.+.. .++....++..+..+ +
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~-~~~~~~~~~~~~~~~~~~~~~ 81 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP-GFADSAPVERLITHEKLAFMT 81 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhh-hhhhcCcccceeeeeeEEEEc
Confidence 34799999995 579999999999999999999999887642 22344444443311 111111122211110 0
Q ss_pred CCCc--ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEec
Q 009027 180 NPNR--CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (546)
Q Consensus 180 ~~~~--v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~AD 257 (546)
.... +.|... ....+....+.|+|..|+++|.+++.+.|++++++++|+++..+++.+.+...++.+++|++||+||
T Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~ 160 (428)
T PRK10157 82 EKSAMTMDYCNG-DETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILAD 160 (428)
T ss_pred CCCceeeccccc-cccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEe
Confidence 0011 111111 0111122357789999999999999999999999999999988777765444567789999999999
Q ss_pred CCChHHHHHhcCCCC--CCeeeeEEEEEeeccCCC----------ceeee-eccCCcccccCCCCcceEEEEecCCCCCc
Q 009027 258 GNFSPVVKQIRSGRK--PDGVCLVVGSCARGFKDN----------STSDV-IYSSSSVKKVGDSEVQLFWEAFPAGSGPL 324 (546)
Q Consensus 258 G~~S~vr~ql~~~~~--~~~~~~~vg~~~~~~~~~----------~~~~i-~~~~~~i~~~~~~~~~~~W~~fp~~~g~~ 324 (546)
|.+|.++++++...+ +..++..+..... .+.. ..+.+ ++...+.. + -.++.| .|+..+.
T Consensus 161 G~~s~l~~~lgl~~~~~~~~~av~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~---g-~~ggG~-~~~~~~~-- 232 (428)
T PRK10157 161 GVNSILAEKLGMAKRVKPTDVAVGVKELIE-LPKSVIEDRFQLQGNQGAACLFAGSPTD---G-LMGGGF-LYTNENT-- 232 (428)
T ss_pred CCCHHHHHHcCCCCCCCCcEEEEEEEEEEE-cCHHHHHHhhccCCCCCeEEEEEECCCC---C-CcCcee-EEEcCCe--
Confidence 999999999876532 2333321111111 1100 00001 11000100 0 112234 4565432
Q ss_pred cceEEEEEccC-CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCC
Q 009027 325 DRTTYMFTYID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSP 402 (546)
Q Consensus 325 ~~~~~l~~~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~P 402 (546)
...++....+ ......+..++++.| ..+|.++.. +...+........+|.... ...+.+.+++++|||||++++|
T Consensus 233 -~svG~~~~~~~~~~~~~~~~~~l~~~-~~~p~v~~~-~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p 309 (428)
T PRK10157 233 -LSLGLVCGLHHLHDAKKSVPQMLEDF-KQHPAVAPL-IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMN 309 (428)
T ss_pred -EEEEEEEehHHhcccCCCHHHHHHHH-HhCchHHHH-hCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccc
Confidence 3444433222 112234667777766 445554432 1111111111223554321 1235678999999999999999
Q ss_pred C--CCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 403 V--SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 403 l--sg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
+ ++.|+..++..+..+|+.|.++++.++.++.. |+.|+
T Consensus 310 ~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~---l~~Y~ 349 (428)
T PRK10157 310 LGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQK---LAEYR 349 (428)
T ss_pred cCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhh---HHHHH
Confidence 5 89999999999999999999999987755544 46788
No 32
>PRK06184 hypothetical protein; Provisional
Probab=99.96 E-value=1e-26 Score=255.10 Aligned_cols=310 Identities=15% Similarity=0.129 Sum_probs=187.1
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhh---ccCC-Cc
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATAT---KFNP-NR 183 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~---~~~~-~~ 183 (546)
++||+|||| ++|+++|+.|+++|++|+||||++.+.. .+...|++++++.|+++|++++..-...... .+.. ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 589999995 5799999999999999999999887643 4566799999999999999753110000000 0110 00
Q ss_pred c---cccCC-c-cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE---cCCcEEEcCEEEE
Q 009027 184 C---GFEGK-G-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIID 255 (546)
Q Consensus 184 v---~f~~~-~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~---~~g~~i~ArlVV~ 255 (546)
+ .+... . ....+....+.+++..+++.|.+++.+.|++++.+++++++.++++++++++ .++++++|++||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVg 162 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVG 162 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEE
Confidence 0 00000 0 0011112235688999999999999999999999999999999999988887 4566899999999
Q ss_pred ecCCChHHHHHhcCCCCC---Ce-eeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027 256 AMGNFSPVVKQIRSGRKP---DG-VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (546)
Q Consensus 256 ADG~~S~vr~ql~~~~~~---~~-~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~ 331 (546)
|||.+|.+|+++++...- .. .+.++.......+ ......+.. . ..+.+ ..+|..++ ....+.+
T Consensus 163 ADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~-~~~~~-~~~p~~~~--~~~~~~~ 229 (502)
T PRK06184 163 ADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLD-RDAWHQWPD--------G-DMGMI-ALCPLPGT--DLFQIQA 229 (502)
T ss_pred CCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCC-CcceEEccC--------C-CCcEE-EEEEccCC--CeEEEEE
Confidence 999999999999865421 11 2221111111111 011111110 0 11222 24555432 1222222
Q ss_pred EccCCCCCCccHHHHHHHHHHhCccccccccCcceEeeee-eeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027 332 TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVI-YGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS 410 (546)
Q Consensus 332 ~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~-~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~ 410 (546)
..........+.+++.+.+....+.. ...+.... ...++.....+.++..+||+|+|||||.++|+.|||+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~ 303 (502)
T PRK06184 230 PLPPGGEPDLSADGLTALLAERTGRT------DIRLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNT 303 (502)
T ss_pred EcCCCccCCCCHHHHHHHHHHhcCCC------CcceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccc
Confidence 22111111112222222222222111 11111111 122333222334677899999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 411 ~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
+++|+..|+..|..+++. . .-..|+.|+
T Consensus 304 gi~DA~~LawkLa~vl~g-~----~~~lL~~Ye 331 (502)
T PRK06184 304 SVQDAYNLGWKLAAVLAG-A----PEALLDTYE 331 (502)
T ss_pred hHHHHHHHHHHHHHHHcC-C----CHHHHHHHH
Confidence 999999999999877754 1 233578899
No 33
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.96 E-value=1.1e-26 Score=235.41 Aligned_cols=287 Identities=21% Similarity=0.221 Sum_probs=186.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
|||+||||| +|+++|+.|+++|++|+|+||+..++.. ....+++..++.|...+.. ... ..+...+....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-----~~~~~~~~~~~ 72 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL---IVN-----LVRGARFFSPN 72 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh---hhh-----heeeEEEEcCC
Confidence 799999965 6999999999999999999999876642 3346777776665443321 110 01100000001
Q ss_pred Ccc--ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEcCEEEEecCCChHHHH
Q 009027 189 KGE--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPVVK 265 (546)
Q Consensus 189 ~~~--l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-g~~i~ArlVV~ADG~~S~vr~ 265 (546)
+.. ...+....+.+++..|.+.|.+++.+.|++++.+++++++..+++++.+.+.+ +.+++|++||+|||.+|.+++
T Consensus 73 ~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~ 152 (295)
T TIGR02032 73 GDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAK 152 (295)
T ss_pred CcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHH
Confidence 111 11112234579999999999999999999999999999999888888877654 458999999999999999999
Q ss_pred HhcCCCCCCeeeeEEEEEeecc--C-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCcc
Q 009027 266 QIRSGRKPDGVCLVVGSCARGF--K-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPK 342 (546)
Q Consensus 266 ql~~~~~~~~~~~~vg~~~~~~--~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~~ 342 (546)
+++....+...+.........- + ..+...++...... ..++.| .+|..++ .....+..... ....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~P~~~~---~~~v~~~~~~~-~~~~~ 221 (295)
T TIGR02032 153 KLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGIS------PGGYGW-VFPKGDG---TANVGVGSRSA-EEGED 221 (295)
T ss_pred hcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcC------CCceEE-EEeCCCC---eEEEeeeeccC-CCCCC
Confidence 8876543333332211111100 0 11112232222111 246788 7898765 22222222111 12347
Q ss_pred HHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHH
Q 009027 343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 422 (546)
Q Consensus 343 l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I 422 (546)
+++.+++|.+..|.+.. .+..+.....+|... ...+...+|++++|||||+++|++|+|++++++|+..+++.|
T Consensus 222 ~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~-~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 222 LKKYLKDFLARRPELKD-----AETVEVIGAPIPIGR-PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred HHHHHHHHHHhCccccc-----CcEEeeeceeeccCC-CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 88999999987776332 233333334455532 344678899999999999999999999999999988887753
No 34
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.96 E-value=3.1e-26 Score=253.41 Aligned_cols=306 Identities=17% Similarity=0.154 Sum_probs=185.2
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~-~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
.++||+|||| +.|+++|+.|+++|++|+|+||++.+. ..+.+.+++++++.|+++|++++ +.+. ......+.|
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~--l~~~---~~~~~~~~~ 83 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADE--VLPH---TTPNHGMRF 83 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhH--HHhh---cccCCceEE
Confidence 3699999996 569999999999999999999998654 35678899999999999999754 2111 110011111
Q ss_pred c--CCccc-ccc--------ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEc
Q 009027 187 E--GKGEI-WVE--------DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EG--KILSS 250 (546)
Q Consensus 187 ~--~~~~l-~~~--------~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~--~g--~~i~A 250 (546)
. .+..+ ..+ ....+.+++..+++.|.+.+.+. |++++.+++|+++.+++++++|+++ +| ++++|
T Consensus 84 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~a 163 (538)
T PRK06183 84 LDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRA 163 (538)
T ss_pred EcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEE
Confidence 1 01100 000 01124578889999999998775 8899999999999999999999886 45 47999
Q ss_pred CEEEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCC-CceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027 251 HLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (546)
Q Consensus 251 rlVV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~-~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~ 326 (546)
|+||+|||.+|.+|+++++... +...+.++......... ......++ +.+..++ .+|..++ .
T Consensus 164 d~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~p~~~~---~ 229 (538)
T PRK06183 164 RYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYC---------DPARPYT--SVRLPHG---R 229 (538)
T ss_pred EEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEE---------CCCCCEE--EEEcCCC---e
Confidence 9999999999999999976432 11111111110000000 00000000 0012222 3455433 2
Q ss_pred eEEEEEccC-CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCC
Q 009027 327 TTYMFTYID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF 405 (546)
Q Consensus 327 ~~~l~~~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg 405 (546)
..+.+.... .......-.+.+.+++..... .....++.+. ..++.......++..+||+|+|||||.++|+.|
T Consensus 230 ~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~--~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~G 303 (538)
T PRK06183 230 RRWEFMLLPGETEEQLASPENVWRLLAPWGP----TPDDAELIRH--AVYTFHARVADRWRSGRVLLAGDAAHLMPPFAG 303 (538)
T ss_pred EEEEEEeCCCCChhhcCCHHHHHHHHHhhCC----CCcceEEEEE--EeeeEccEEhhhhccCCEEEEechhhcCCCccc
Confidence 223233211 111111112222333332210 0112222211 112222122346778999999999999999999
Q ss_pred CcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 406 ~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
||+|++++|+..|++.|...++... .-..|..|+
T Consensus 304 QG~n~gi~DA~~La~kLa~~~~g~~----~~~~L~~Ye 337 (538)
T PRK06183 304 QGMNSGIRDAANLAWKLAAVLRGRA----GDALLDTYE 337 (538)
T ss_pred cchhhhHHHHHHHHHHHHHHHcCCC----cHHHHHHHH
Confidence 9999999999999999886654321 234678999
No 35
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.96 E-value=4e-26 Score=242.80 Aligned_cols=310 Identities=17% Similarity=0.201 Sum_probs=181.4
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC---CCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~---~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~ 185 (546)
++||+|||| ++|+++|+.|+++|++|+|+||++.+ +..+...+++++++.|+++|++++ +.+. ........+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~--l~~~-~~~~~~~~~~ 78 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGER--MDRE-GLVHDGIELR 78 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHH--HHhc-CCccCcEEEE
Confidence 589999996 56999999999999999999999853 223444689999999999999754 2211 0011111111
Q ss_pred ccCCc-cccccc----cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-eCCeEEEEEc-CCc--EEEcCEEEEe
Q 009027 186 FEGKG-EIWVED----ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLIIDA 256 (546)
Q Consensus 186 f~~~~-~l~~~~----~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V~~~-~g~--~i~ArlVV~A 256 (546)
+.+.. .+..+. .....+++..+.+.|.+++.+.|++++.+++++++.. +++.+.|++. +|+ +++||+||+|
T Consensus 79 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgA 158 (392)
T PRK08243 79 FDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGC 158 (392)
T ss_pred ECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEEC
Confidence 11100 011110 0112356778888899888888999999999999976 6677777773 563 7999999999
Q ss_pred cCCChHHHHHhcCCCCC--Ceeee--EEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE
Q 009027 257 MGNFSPVVKQIRSGRKP--DGVCL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (546)
Q Consensus 257 DG~~S~vr~ql~~~~~~--~~~~~--~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~ 332 (546)
||.+|.+|++++..... ....+ ..+.... .+ ....++++. ..+.++.| .++.+.+ ...+++.
T Consensus 159 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~--------~~~~~~~~-~~~~~~~---~~~~~~~ 224 (392)
T PRK08243 159 DGFHGVSRASIPAGALRTFERVYPFGWLGILAE-AP-PVSDELIYA--------NHERGFAL-CSMRSPT---RSRYYLQ 224 (392)
T ss_pred CCCCCchhhhcCcchhhceecccCceEEEEeCC-CC-CCCCceEEe--------eCCCceEE-EecCCCC---cEEEEEE
Confidence 99999999998654211 11000 0011000 00 000011110 01234544 3443322 2222222
Q ss_pred ccC-CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhh
Q 009027 333 YID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (546)
Q Consensus 333 ~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~ 411 (546)
+.. ......+..+..+.+.+.++......+....... ...+|.......++..+||+|||||||.++|++|||.|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~a 302 (392)
T PRK08243 225 CPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIE--KSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLA 302 (392)
T ss_pred ecCCCCcccCChhHHHHHHHHhcCcccccccccCcccc--ccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHH
Confidence 211 1111112233333333333321100000000000 1123333333346677999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 412 lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
++|+..|++.|..+++.+. ...|+.|+
T Consensus 303 i~Da~~La~~L~~~~~~~~-----~~~L~~Ye 329 (392)
T PRK08243 303 ASDVRYLARALVEFYREGD-----TALLDAYS 329 (392)
T ss_pred HHHHHHHHHHHHHHhccCC-----HHHHHHHH
Confidence 9999999999988876431 34578999
No 36
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=3.1e-26 Score=243.04 Aligned_cols=311 Identities=17% Similarity=0.184 Sum_probs=186.3
Q ss_pred cccEEEEcc-hHHHHHHHHHHhC---CCeEEEEcCCCCC-----C-CcccccCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 009027 110 TFDVIVCGG-TLGIFIATALSFK---GLRVAIVERNTLK-----G-REQEWNISRKELLELVESGILVEDDIDEATATKF 179 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~---G~rVlLlEr~~~~-----~-~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~ 179 (546)
.+||+|||| ++|+++|+.|+++ |++|+|+||.... + ..+...+++.+++.|+.+|++++..-........
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 689999996 5699999999998 9999999996322 1 1245678999999999999986421110000000
Q ss_pred ---CCC---cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCE
Q 009027 180 ---NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (546)
Q Consensus 180 ---~~~---~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~Arl 252 (546)
... ...+.. ..... ...++.+++..|++.|.+.+.+. |++++.+++++++..+++++.|+++++.+++|++
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 83 HVSDRGHAGFVRLDA-EDYGV-PALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRL 160 (395)
T ss_pred EEecCCCCceEEeeh-hhcCC-CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence 000 011110 00111 12245688999999999988764 7899999999999888889999988888899999
Q ss_pred EEEecCCChHHHHHhcCCCCCC---eeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027 253 IIDAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (546)
Q Consensus 253 VV~ADG~~S~vr~ql~~~~~~~---~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~ 329 (546)
||+|||.+|.++++++...... ..+.. ..+.. ........+.... ..+.++ .+|..++ ...+
T Consensus 161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~--------~~g~~~-~~p~~~g---~~~~ 225 (395)
T PRK05732 161 LVAADGSHSALREALGIDWQQHPYEQVAVI-ANVTT--SEAHQGRAFERFT--------EHGPLA-LLPMSDG---RCSL 225 (395)
T ss_pred EEEecCCChhhHHhhCCCccceecCCEEEE-EEEEe--cCCCCCEEEEeec--------CCCCEE-EeECCCC---CeEE
Confidence 9999999999999987653221 12211 11110 0000011110000 012233 5676655 2222
Q ss_pred EEEccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 009027 330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (546)
Q Consensus 330 l~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~ 406 (546)
.+....... ...+..+..+.+...++. . +..+..... ...+|+....+.++..+|++|+|||||.++|++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~-~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~Gq 300 (395)
T PRK05732 226 VWCHPLEDAEEVLSWSDAQFLAELQQAFGW-R---LGRITHAGK-RSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQ 300 (395)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHHh-h---hcceeecCC-cceecccccchhhhccCcEEEEeecccccCCcccc
Confidence 222111000 001222333333222211 0 011100000 11234433334466789999999999999999999
Q ss_pred cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|.|++++|+..|++.|..++..+. +......|+.|+
T Consensus 301 G~~~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~Y~ 336 (395)
T PRK05732 301 GFNLGLRDVMSLAETLTQALARGE-DIGDYAVLQRYQ 336 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHH
Confidence 999999999999999988876432 211235678899
No 37
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.95 E-value=7.3e-26 Score=240.02 Aligned_cols=290 Identities=18% Similarity=0.195 Sum_probs=177.1
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCc-ccccCC
Q 009027 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR-CGFEGK 189 (546)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~-v~f~~~ 189 (546)
||||||| ++|+++|+.|+++|++|+|||+++..+....|.++...++ ++++ +.++...+.... +.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~- 70 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLS---DLGL------ADCVEHVWPDVYEYRFPK- 70 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhh---hhch------hhHHhhcCCCceEEecCC-
Confidence 8999996 5699999999999999999999875554556777665433 3342 122222222211 11111
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhc
Q 009027 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (546)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~ 268 (546)
.....+. ....+++..|++.|.+++.+.|++++ .++++++..+ ++.+.|++++|++++|++||+|||.+|.+++..
T Consensus 71 ~~~~~~~-~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~- 147 (388)
T TIGR01790 71 QPRKLGT-AYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVR- 147 (388)
T ss_pred cchhcCC-ceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhccccc-
Confidence 1111111 12358999999999999998999886 5578888776 667788887888999999999999999664322
Q ss_pred CCCCCCeeeeEEEEEee--ccCCCceeeeeccCCcccc-cC---CCCcceEEEEecCCCCCccceEEEEEccCCCC----
Q 009027 269 SGRKPDGVCLVVGSCAR--GFKDNSTSDVIYSSSSVKK-VG---DSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA---- 338 (546)
Q Consensus 269 ~~~~~~~~~~~vg~~~~--~~~~~~~~~i~~~~~~i~~-~~---~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~---- 338 (546)
.+... ......|...+ ..+......+++++..... .+ +.+..++| +||.+++ ..++ .......
T Consensus 148 ~~~~~-~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~-~lP~~~~----~~~v-~~~~~~~~~~~ 220 (388)
T TIGR01790 148 FPLNV-GFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLY-AMPLGST----RVFI-EETSLADRPAL 220 (388)
T ss_pred CCCCc-eEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEE-EeecCCC----eEEE-EeccccCCCCC
Confidence 11111 11111222222 1110111123333211110 00 00123778 7998754 2222 1111111
Q ss_pred CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHH
Q 009027 339 GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 418 (546)
Q Consensus 339 ~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~L 418 (546)
....+++.+.+|++.++ + ...++.+...+.+|+.... +...+|+++||||||.+||+||+|++.+++++..+
T Consensus 221 ~~~~~~~~l~~~~~~~g-~-----~~~~i~~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~l 292 (388)
T TIGR01790 221 PRDRLRQRILARLNAQG-W-----QIKTIEEEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGL 292 (388)
T ss_pred CHHHHHHHHHHHHHHcC-C-----eeeEEEeeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHHHHHH
Confidence 11245566666665442 1 1122334456788986533 23679999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 009027 419 STGVYEAVRGD 429 (546)
Q Consensus 419 ae~I~~Al~~g 429 (546)
++.|.++++.+
T Consensus 293 a~~l~~~~~~~ 303 (388)
T TIGR01790 293 AAAIAQALCQS 303 (388)
T ss_pred HHHHHHHhccC
Confidence 99999998765
No 38
>PRK11445 putative oxidoreductase; Provisional
Probab=99.95 E-value=4.4e-26 Score=239.14 Aligned_cols=287 Identities=14% Similarity=0.143 Sum_probs=171.6
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC----C-cccccCCHHHHHHHHHcCCCCccc-chhhhhhccCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG----R-EQEWNISRKELLELVESGILVEDD-IDEATATKFNPN 182 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~----~-~r~~~Is~~~l~~L~~lGl~~~~~-ie~~i~~~~~~~ 182 (546)
+|||+|||| ++|+++|+.|+++ ++|+|+||++.+. . +.+..++++.++.|+++|++.... +... ..+...
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~--~~~~~~ 77 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP--QIFAVK 77 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc--ccceee
Confidence 489999995 5799999999999 9999999987532 1 234579999999999999974321 1110 001111
Q ss_pred cccccCCcccccc-ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecC
Q 009027 183 RCGFEGKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMG 258 (546)
Q Consensus 183 ~v~f~~~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~--~i~ArlVV~ADG 258 (546)
.+.+.. .+... ....+.++|..|+++|.+. .+.|++++.++.++++..+++++.|.+ ++|+ +++|++||+|||
T Consensus 78 ~~~~~~--~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG 154 (351)
T PRK11445 78 TIDLAN--SLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADG 154 (351)
T ss_pred Eecccc--cchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCC
Confidence 111111 01000 1112469999999999985 467899999999999998889988886 4564 799999999999
Q ss_pred CChHHHHHhcCCCCCCeeeeEEEEEeeccCCC---ceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccC
Q 009027 259 NFSPVVKQIRSGRKPDGVCLVVGSCARGFKDN---STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID 335 (546)
Q Consensus 259 ~~S~vr~ql~~~~~~~~~~~~vg~~~~~~~~~---~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~ 335 (546)
.+|.+|++++........ ++.. +-+... ....+++... . ..+|.| .||..+. ......+.
T Consensus 155 ~~S~vr~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~f~~~-~------~~~~~W-~~p~~~~----~~~g~~~~- 217 (351)
T PRK11445 155 ANSMVRRHLYPDHQIRKY---VAIQ-QWFAEKHPVPFYSCIFDNE-I------TDCYSW-SISKDGY----FIFGGAYP- 217 (351)
T ss_pred CCcHHhHHhcCCCchhhE---EEEE-EEecCCCCCCCcceEEecc-C------CCceEE-EeCCCCc----EEeccccc-
Confidence 999999998754322111 1111 111110 1111111111 1 247889 7888643 22111221
Q ss_pred CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCC-CccCCcEEEeCCCCCCCCCCCCCcchhhHhh
Q 009027 336 PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSFGGFGSLTRH 414 (546)
Q Consensus 336 ~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~-~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd 414 (546)
........+.+.+++..+.. ..++. .+...+.++....... ....+|++|||||||++||++|+|++.++++
T Consensus 218 -~~~~~~~~~~l~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~s 290 (351)
T PRK11445 218 -MKDGRERFETLKEKLSAFGF----QFGKP--VKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDS 290 (351)
T ss_pred -ccchHHHHHHHHHHHHhccc----ccccc--cccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHh
Confidence 11111111112223322211 01111 0111122222111111 2235899999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 009027 415 LGRLSTGVYEAV 426 (546)
Q Consensus 415 ~~~Lae~I~~Al 426 (546)
+..|++.|.++.
T Consensus 291 a~~la~~l~~~~ 302 (351)
T PRK11445 291 ARILSEVLNKQP 302 (351)
T ss_pred HHHHHHHHHhcc
Confidence 999999886543
No 39
>PRK07538 hypothetical protein; Provisional
Probab=99.95 E-value=5.1e-26 Score=243.64 Aligned_cols=361 Identities=17% Similarity=0.210 Sum_probs=209.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~- 188 (546)
||+||||| +|+++|+.|+++|++|+|+||++.++.. ...+++++.++.|.++|+++. +... ......+.|..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~--l~~~---~~~~~~~~~~~~ 76 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDA--LDAI---GIRTRELAYFNR 76 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHH--HHhh---CCCCcceEEEcC
Confidence 89999965 6999999999999999999999866532 345788999999999999753 2211 11111111110
Q ss_pred -Cccccc-c------c-cccceeCHHHHHHHHHHHHHh-cCC-EEEeCceEEEEEEeCCeEEEEEcCC-----cEEEcCE
Q 009027 189 -KGEIWV-E------D-ILNLGVSPAKLIEIVKKRFIS-LGG-VIFEGYSVSSICTYENAAVLLLAEG-----KILSSHL 252 (546)
Q Consensus 189 -~~~l~~-~------~-~l~~~V~~~~L~~~L~~~a~~-~G~-~v~~~t~v~~i~~~~dgv~V~~~~g-----~~i~Arl 252 (546)
+..++. + . ...+.++|..|++.|.+++.+ .|. +++.+++|+++..+++++++.+.++ ++++||+
T Consensus 77 ~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adl 156 (413)
T PRK07538 77 HGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDV 156 (413)
T ss_pred CCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeE
Confidence 111110 0 0 012458999999999999876 475 6999999999998888877776542 4899999
Q ss_pred EEEecCCChHHHHHhcCCC-CC--CeeeeEEEEEee-ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCC--C--c
Q 009027 253 IIDAMGNFSPVVKQIRSGR-KP--DGVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG--P--L 324 (546)
Q Consensus 253 VV~ADG~~S~vr~ql~~~~-~~--~~~~~~vg~~~~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g--~--~ 324 (546)
||+|||.+|.+|+++.... ++ .+.....+.+.. .+.... .++.. .. ..+.+. .||..+. + .
T Consensus 157 vIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~-------g~-~~~~~~-~~p~~~~~~~~g~ 225 (413)
T PRK07538 157 LIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGR--SMVMA-------GH-LDGKLV-VYPISEPVDADGR 225 (413)
T ss_pred EEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCC--cEEEE-------cC-CCCEEE-EEECCCCcccCCc
Confidence 9999999999999986443 11 111111111100 000000 00000 00 011122 3443321 0 0
Q ss_pred cceEEEEEccCC---C------CCCccHHHHHHHHHHhCcc---ccccccCcceEeeeeeeeeccccCCC-CCccCCcEE
Q 009027 325 DRTTYMFTYIDP---Q------AGSPKLEELLERYWDLMPE---YQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRIL 391 (546)
Q Consensus 325 ~~~~~l~~~~~~---~------~~~~~l~~l~~~~~~~lp~---~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~~~~rvl 391 (546)
....+.+..... . ......+++++.|-...+. +... +... .. ...+|++...+ .++..+|++
T Consensus 226 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~---~~-~~~~p~~~~~~~~~w~~grv~ 300 (413)
T PRK07538 226 QLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPAL-IRAA---EA-IYEYPMVDRDPLPRWTRGRVT 300 (413)
T ss_pred eEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHH-HhcC---cc-eeeccccccCCCCcccCCcEE
Confidence 011222211111 0 0112444554433222111 1111 0100 01 11346654332 356789999
Q ss_pred EeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhH--HHHHHH
Q 009027 392 QFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPL--AKTLGL 469 (546)
Q Consensus 392 LVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~--~~~~~~ 469 (546)
|||||||.++|++|||.|.+++|+..|++.|... +. .-..|+.|++ .+++.....+..... ...+.+
T Consensus 301 LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~----~~~aL~~Ye~----~R~~~~~~~~~~s~~~~~~~~~~ 369 (413)
T PRK07538 301 LLGDAAHPMYPVGSNGASQAILDARALADALAAH---GD----PEAALAAYEA----ERRPATAQIVLANRLNGPEGVLQ 369 (413)
T ss_pred EEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CC----HHHHHHHHHH----HhhHHHHHHHHHhhhcChHHHHH
Confidence 9999999999999999999999999999988753 21 2345789993 223323222221111 000112
Q ss_pred -HHhhCCCcHHHHHHhcChhhHHHHHHHHHHHHHHH
Q 009027 470 -VMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYT 504 (546)
Q Consensus 470 -~~~~~P~~l~~~~~~~g~~~~~~w~~~~~~~~~~~ 504 (546)
.....|.-++.+.+.+...++.+++..|-.+..++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
T PRK07538 370 LVEERAPGGFADIDDVISSAELEAIAARYKAAAGFA 405 (413)
T ss_pred HHHhhCCCCccchhhcCCHHHHHHHHHHHHHhhCCC
Confidence 22357999999999999999999988776665443
No 40
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.95 E-value=2.2e-25 Score=250.12 Aligned_cols=326 Identities=17% Similarity=0.163 Sum_probs=195.9
Q ss_pred CcccEEEEcc-hHHHHHHHHHHh-CCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhh---ccCCC
Q 009027 109 GTFDVIVCGG-TLGIFIATALSF-KGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATAT---KFNPN 182 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~-~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~---~~~~~ 182 (546)
.++||+|||| |+|+++|+.|++ .|++|.||||.+.+.. .+..+|++++++.|+++|++++..-+..... -+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 3799999995 579999999999 5999999999875533 3556799999999999999864211110000 01110
Q ss_pred -----ccc----ccCCccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeCC---eEEEEEc-----
Q 009027 183 -----RCG----FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN---AAVLLLA----- 243 (546)
Q Consensus 183 -----~v~----f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d---gv~V~~~----- 243 (546)
.+. +........+.. .+.+++..+++.|.+++.+.|+ ++..+++++++.++++ .|+|+++
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~-~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFP-HVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CccccceeccccccccCCCCCCCc-cEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 000 000000000111 2468899999999999988775 7788999999987653 4777774
Q ss_pred -CC--cEEEcCEEEEecCCChHHHHHhcCCCC---CCeeeeEEEEEe-eccCCCceeeeeccCCcccccCCCCcceEEEE
Q 009027 244 -EG--KILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEA 316 (546)
Q Consensus 244 -~g--~~i~ArlVV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~ 316 (546)
+| ++++||+||||||.+|.||+++++... .++.+.++.... ..+++......+.+ +.+..++ .
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~--------~~~g~~~--~ 259 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQS--------ASEGSIL--L 259 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEec--------CCCceEE--E
Confidence 34 489999999999999999999987532 222222221111 12221111101110 0112333 3
Q ss_pred ecCCCCCccceEEEEEccCC--CC----CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCc-----
Q 009027 317 FPAGSGPLDRTTYMFTYIDP--QA----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA----- 385 (546)
Q Consensus 317 fp~~~g~~~~~~~l~~~~~~--~~----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~----- 385 (546)
+|..++ ....+.+..... .. ...+.+++.+.+.+.++.+.. ....+.+ +..++.....+.++
T Consensus 260 ~P~~~g--~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~-~~~~v~w----~s~y~i~~r~a~~f~~~~~ 332 (634)
T PRK08294 260 IPREGG--YLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTL-DVKEVAW----WSVYEVGQRLTDRFDDVPA 332 (634)
T ss_pred EECCCC--eEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCC-ceeEEeE----Eecccccceehhhcccccc
Confidence 566543 112222222110 00 123667777766554433211 1111111 12333322222233
Q ss_pred -----cCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcc
Q 009027 386 -----AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKF 460 (546)
Q Consensus 386 -----~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~ 460 (546)
..+||+|+|||||.++|..|||+|.++.|+..|+..|...++. . + .-..|+.|+ ..+++..+.++.+
T Consensus 333 ~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g-~-a--~~~lL~tYe----~ERrp~a~~li~~ 404 (634)
T PRK08294 333 EEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSG-R-S--PPELLHTYS----AERQAIAQELIDF 404 (634)
T ss_pred cccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcC-C-C--cHHHHHHHH----HHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999888753 2 2 234678999 3456666666544
No 41
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.95 E-value=1.6e-25 Score=238.84 Aligned_cols=308 Identities=14% Similarity=0.138 Sum_probs=180.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~ 189 (546)
+|+||||| +|+++|+.|+++|++|.|+||.+.++. .+...++++.++.|.++|++++. ... .+.+..+.+..+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l--~~~---~~~~~~~~~~~g 78 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRL--SGT---GVTPKALYLMDG 78 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHH--hhc---ccCcceEEEecC
Confidence 69999965 699999999999999999999876543 35678999999999999998642 111 111111111110
Q ss_pred cc-----------cccc--ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEc---CCcEEEcCE
Q 009027 190 GE-----------IWVE--DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHL 252 (546)
Q Consensus 190 ~~-----------l~~~--~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~---~g~~i~Arl 252 (546)
.. .... ....+.+++..|.+.|.+++.+. |++++.+++++++..++++++|++. ++++++||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adl 158 (400)
T PRK06475 79 RKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAY 158 (400)
T ss_pred CCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCE
Confidence 00 0000 00113589999999999999764 7899999999999988888888763 345899999
Q ss_pred EEEecCCChHHHHHhcCCC-CCCeeeeEEEEEe-eccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEE
Q 009027 253 IIDAMGNFSPVVKQIRSGR-KPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (546)
Q Consensus 253 VV~ADG~~S~vr~ql~~~~-~~~~~~~~vg~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l 330 (546)
||+|||.+|.+|++++... .+.+.....+.+. ..++. ...+.+..........+.+ +.+. .+|..++. ...++
T Consensus 159 vIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-~~~~-~~p~~~~~--~~~~~ 233 (400)
T PRK06475 159 LIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPA-SFLSAMPEHKAVSAWLGNK-AHFI-AYPVKGGK--FFNFV 233 (400)
T ss_pred EEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcch-hhhhhcccCCceEEEEcCC-CEEE-EEEccCCc--EEEEE
Confidence 9999999999999986432 1222211111111 11110 0000000000000000112 2222 46766441 22222
Q ss_pred EEccCCC-C---CC-ccHHHHHHHHHHh-CccccccccCcceEeeeeeeeeccccCCCCCc-cCCcEEEeCCCCCCCCCC
Q 009027 331 FTYIDPQ-A---GS-PKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA-AFNRILQFGDASGIQSPV 403 (546)
Q Consensus 331 ~~~~~~~-~---~~-~~l~~l~~~~~~~-lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~-~~~rvlLVGDAA~~v~Pl 403 (546)
....... . .. .+..++ ..++.. .|.+... ++... . +..+|++...+.++ ..+|++|||||||.++|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~-i~~~~---~-~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~ 307 (400)
T PRK06475 234 AITGGENPGEVWSKTGDKAHL-KSIYADWNKPVLQI-LAAID---E-WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPF 307 (400)
T ss_pred EEEcCCCCcccCCCCCCHHHH-HHHhcCCChHHHHH-HhcCC---c-eeECcCcccCCCcceecCCEEEEecccccCCch
Confidence 2111110 0 11 122222 222222 2222221 11111 1 12467665444454 458999999999999999
Q ss_pred CCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 404 sg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
+|||.|++++|+..|++.|.. . +. ...|+.|+
T Consensus 308 ~GqG~n~aieDa~~La~~L~~----~--~~--~~aL~~Ye 339 (400)
T PRK06475 308 AAQGAAMAIEDAAALAEALDS----D--DQ--SAGLKRFD 339 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhc----C--CH--HHHHHHHH
Confidence 999999999999999988742 1 11 24578999
No 42
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.95 E-value=5.2e-25 Score=244.14 Aligned_cols=309 Identities=16% Similarity=0.145 Sum_probs=186.4
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~-~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
.++||+|||| ++|+++|+.|+++|++|+||||++.+. ..+.+.+++++++.|+++|++++ +.+... .+......+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~--l~~~~~-~~~~~~~~~ 98 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGER--MVDKGV-SWNVGKVFL 98 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHH--HHhhCc-eeeceeEEe
Confidence 4689999995 579999999999999999999997543 34677899999999999999753 211100 000000100
Q ss_pred cCCc--------cccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEc--CCc-EEEcCEEE
Q 009027 187 EGKG--------EIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EGK-ILSSHLII 254 (546)
Q Consensus 187 ~~~~--------~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~--~g~-~i~ArlVV 254 (546)
.+.. .........+.+++..|++.|.+++.+. +++++.+++++++..+++++++++. ++. +++|++||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vV 178 (547)
T PRK08132 99 RDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVI 178 (547)
T ss_pred CCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEE
Confidence 1000 0000011123478889999999999876 6799999999999999898887764 344 79999999
Q ss_pred EecCCChHHHHHhcCCCCC---CeeeeEEEEEee-ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEE
Q 009027 255 DAMGNFSPVVKQIRSGRKP---DGVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (546)
Q Consensus 255 ~ADG~~S~vr~ql~~~~~~---~~~~~~vg~~~~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l 330 (546)
+|||.+|.+|+++++.... .....++..... .++. .....+. .+.. ...++| ++|..++ ...+.
T Consensus 179 gADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~--~~~~~~~-~~~~-----~~~~~~-~~~~~~~---~~~~~ 246 (547)
T PRK08132 179 ACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPT--ERWFWFD-PPFH-----PGQSVL-LHRQPDN---VWRID 246 (547)
T ss_pred ECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCC--eeeEEEe-ccCC-----CCcEEE-EEeCCCC---eEEEE
Confidence 9999999999999865321 111211111111 1110 0001111 0111 123444 4554432 22211
Q ss_pred EEccC-CCCC-CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027 331 FTYID-PQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (546)
Q Consensus 331 ~~~~~-~~~~-~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~ 408 (546)
+.... ..+. ....+++.+...+.++.. .+.++.. ...++.......++..+||+|+|||||.++|+.|||+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~--~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~ 319 (547)
T PRK08132 247 FQLGWDADPEAEKKPENVIPRVRALLGED-----VPFELEW--VSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGA 319 (547)
T ss_pred EecCCCCCchhhcCHHHHHHHHHHHcCCC-----CCeeEEE--EEeeeeeeeeecccccccEEEEecccccCCCcccccc
Confidence 21111 0111 112233333222223210 1111111 1223333333457788999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 409 g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|++++|+..|+..|...++. . + .-..|+.|+
T Consensus 320 n~gi~DA~~LawkLa~vl~g-~-~--~~~lL~~Ye 350 (547)
T PRK08132 320 NSGIQDADNLAWKLALVLRG-R-A--PDSLLDSYA 350 (547)
T ss_pred cchHHHHHHHHHHHHHHHcC-C-C--cHHHHHHHH
Confidence 99999999999999887753 2 1 234678999
No 43
>PTZ00367 squalene epoxidase; Provisional
Probab=99.95 E-value=2.3e-25 Score=245.86 Aligned_cols=297 Identities=15% Similarity=0.176 Sum_probs=169.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC--CCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL--KGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~--~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
+||||||||| +|+++|+.|+++|++|+|+||.++ +....+..++++.++.|+++|+++.. +.... ......+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l--~~i~~-~~~~~~v~~ 109 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECA--EGIGM-PCFGYVVFD 109 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhH--hhcCc-ceeeeEEEE
Confidence 6999999965 699999999999999999999873 22223346999999999999998642 22111 111111111
Q ss_pred cCCcccccc---ccccceeCHHHHHHHHHHHH---HhcCCEEEeCceEEEEEEeCC-------eEEEEEcC---------
Q 009027 187 EGKGEIWVE---DILNLGVSPAKLIEIVKKRF---ISLGGVIFEGYSVSSICTYEN-------AAVLLLAE--------- 244 (546)
Q Consensus 187 ~~~~~l~~~---~~l~~~V~~~~L~~~L~~~a---~~~G~~v~~~t~v~~i~~~~d-------gv~V~~~~--------- 244 (546)
..+..+..+ ...+..+.+..|.+.|.+++ ...++++++ .+++++..+++ +++++..+
T Consensus 110 ~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f 188 (567)
T PTZ00367 110 HKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPF 188 (567)
T ss_pred CCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCccccccccc
Confidence 111111111 11234567888888888887 345778865 47887754433 35555443
Q ss_pred --------------CcEEEcCEEEEecCCChHHHHHhcCCCC-CCeeeeEEEEEeec--cCCCceeeeeccCCcccccCC
Q 009027 245 --------------GKILSSHLIIDAMGNFSPVVKQIRSGRK-PDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGD 307 (546)
Q Consensus 245 --------------g~~i~ArlVV~ADG~~S~vr~ql~~~~~-~~~~~~~vg~~~~~--~~~~~~~~i~~~~~~i~~~~~ 307 (546)
+++++|++||+|||.+|.+|++++...+ ++......+..... .+....+.+++.
T Consensus 189 ~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g--------- 259 (567)
T PTZ00367 189 REDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLG--------- 259 (567)
T ss_pred ccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEc---------
Confidence 4689999999999999999999975432 11111112222211 112222233221
Q ss_pred CCcceEEEEecCCCCCccceEEEEEccCCC-CCCccHHHHHHHHH-HhCcc-cccccc-CcceEeeeeeeeeccccCCCC
Q 009027 308 SEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-AGSPKLEELLERYW-DLMPE-YQGVTL-DNLEIQRVIYGIFPTYRDSPL 383 (546)
Q Consensus 308 ~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~-~~~~~l~~l~~~~~-~~lp~-~~~~~l-~~~~~~~~~~g~~P~~~~~~~ 383 (546)
..+.+| .+|.+++ ....+..+.... +......+.+.+.. ..+|+ ++.. + ..+.-... ...+|.....+.
T Consensus 260 -~~gpi~-~yPl~~~---~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~-f~~~l~~~~~-l~~~p~~~~p~~ 332 (567)
T PTZ00367 260 -KTGPIL-SYRLDDN---ELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRES-FIRASKDTKR-IRSMPNARYPPA 332 (567)
T ss_pred -CCceEE-EEEcCCC---eEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHH-HHHhhcccCC-eEEeeHhhCCCc
Confidence 134455 6888754 233333332211 10001111111111 01111 1100 0 00000000 112344443344
Q ss_pred CccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHH
Q 009027 384 PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 426 (546)
Q Consensus 384 ~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al 426 (546)
++..+|++|+|||||++||++|||+|++++|+..|++.|..+.
T Consensus 333 ~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~ 375 (567)
T PTZ00367 333 FPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIK 375 (567)
T ss_pred cCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 5677899999999999999999999999999999999987643
No 44
>PRK06753 hypothetical protein; Provisional
Probab=99.95 E-value=3.6e-25 Score=233.41 Aligned_cols=297 Identities=20% Similarity=0.196 Sum_probs=179.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~- 188 (546)
||+||||| +|+++|..|+++|++|+|+||++.++.. +.+.++++.++.|+.+|+++. +.. .......+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~--~~~---~~~~~~~~~~~~~ 76 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKG--IKN---AGQILSTMNLLDD 76 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHH--HHh---cCCcccceeEEcC
Confidence 79999965 6999999999999999999999876533 456799999999999998743 111 101111111110
Q ss_pred -Ccc---cc-ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027 189 -KGE---IW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 189 -~~~---l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v 263 (546)
+.. +. .....++.|++..|++.|.+.+. ..+++.+++++++..+++++.|++++|+++++++||+|||.+|.+
T Consensus 77 ~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 77 KGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred CCCEEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence 111 00 01123467999999999998875 358999999999998888999999889899999999999999999
Q ss_pred HHHhcCCCCCCe--eeeEEEEEee-ccCC-CceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCC-C
Q 009027 264 VKQIRSGRKPDG--VCLVVGSCAR-GFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-A 338 (546)
Q Consensus 264 r~ql~~~~~~~~--~~~~vg~~~~-~~~~-~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~-~ 338 (546)
|++++...+... .....+.... ..+. ....+.+ + ..+.+| ++|..++ ..+++...... .
T Consensus 155 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~-~~g~~~-~~p~~~~----~~~~~~~~~~~~~ 218 (373)
T PRK06753 155 RQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYW----------G-TKGRFG-IVPLLNN----QAYWFITINAKER 218 (373)
T ss_pred HHHhCCCCCceEcceEEEEEEeccccccCccceEEEE----------c-CCCEEE-EEEcCCC----eEEEEEEeccccC
Confidence 999875432211 1101111110 0000 0000111 0 134566 6777654 22222221111 0
Q ss_pred --C-C-ccHHHHHHHHHHh-CccccccccCcceEeeeeeeeeccccCC-CCCccCCcEEEeCCCCCCCCCCCCCcchhhH
Q 009027 339 --G-S-PKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSPVSFGGFGSLT 412 (546)
Q Consensus 339 --~-~-~~l~~l~~~~~~~-lp~~~~~~l~~~~~~~~~~g~~P~~~~~-~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~l 412 (546)
. . ....++ .+++.. .+.++.. ++.... .... ..+.+... ..++..+|++|||||||.++|++|+|.|+++
T Consensus 219 ~~~~~~~~~~~l-~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai 294 (373)
T PRK06753 219 DPKYSSFGKPHL-QAYFNHYPNEVREI-LDKQSE-TGIL-HHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAM 294 (373)
T ss_pred CcccccccHHHH-HHHHhcCChHHHHH-HHhCCc-ccce-eeccccccccccccCCCEEEEecccccCCCCcCccHHHHH
Confidence 0 1 111222 223222 2222221 111100 0000 12222221 2356779999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 413 rd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
+|+..|++.|.. . + .-+.|+.|+
T Consensus 295 ~Da~~L~~~L~~----~--~--~~~al~~Y~ 317 (373)
T PRK06753 295 EDAIVLANCLNA----Y--D--FEKALQRYD 317 (373)
T ss_pred HHHHHHHHHhhh----c--c--HHHHHHHHH
Confidence 999999987742 1 1 134578899
No 45
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.94 E-value=1.4e-24 Score=230.98 Aligned_cols=307 Identities=15% Similarity=0.143 Sum_probs=172.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC---CcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~---~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~ 185 (546)
.+||+||||| +|+++|+.|+++|++|+|+||++.+. ..+...+++++++.|+++|++++ +... ......+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~--l~~~---~~~~~~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDER--MDRE---GLVHEGTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHH--HHhc---CceecceE
Confidence 4899999965 69999999999999999999998532 23445689999999999999864 2211 11111111
Q ss_pred cc-CCc--ccccccc---cc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-eCCeEEEEEc-CCc--EEEcCEEE
Q 009027 186 FE-GKG--EIWVEDI---LN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLII 254 (546)
Q Consensus 186 f~-~~~--~l~~~~~---l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V~~~-~g~--~i~ArlVV 254 (546)
+. ++. .+..+.. .. ....+..+.+.|.+++.+.|++++.+++++.+.. +++.+.|++. +|+ +++||+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI 156 (390)
T TIGR02360 77 IAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA 156 (390)
T ss_pred EeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence 11 110 0111100 01 1234667889999998888999999988877754 5567777775 665 79999999
Q ss_pred EecCCChHHHHHhcCCCCC--Ceeee--EEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEE
Q 009027 255 DAMGNFSPVVKQIRSGRKP--DGVCL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (546)
Q Consensus 255 ~ADG~~S~vr~ql~~~~~~--~~~~~--~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l 330 (546)
+|||.+|.||++++....+ .+... ..+.... .+ .....+++. +.+.++.+ +|..++. ...+.
T Consensus 157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~--------~~~~~~~~--~~~~~~~--~~~~~ 222 (390)
T TIGR02360 157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSE-TP-PVSHELIYS--------NHERGFAL--CSMRSAT--RSRYY 222 (390)
T ss_pred ECCCCchhhHHhcCcccceeeeccCCcceEEEecC-CC-CCCCceEEE--------eCCCceEE--EeccCCC--cceEE
Confidence 9999999999997543211 11000 0011100 00 000001100 00122222 2322110 11111
Q ss_pred EEccCCCC-CCccHHHHHHHHHHhCc-cccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027 331 FTYIDPQA-GSPKLEELLERYWDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (546)
Q Consensus 331 ~~~~~~~~-~~~~l~~l~~~~~~~lp-~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~ 408 (546)
+....... .......+.+...+.++ .+.......... .....|+......++..+|++|+|||||.++|+.|||.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~ 299 (390)
T TIGR02360 223 VQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSI---EKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGL 299 (390)
T ss_pred EEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCcc---ceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCch
Confidence 11111000 00011112222222221 111110000000 01233443333446778999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 409 g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|++++|+..|++.|..+...+ .-..|+.|+
T Consensus 300 n~aieDA~~La~~L~~~~~~~-----~~~al~~Y~ 329 (390)
T TIGR02360 300 NLAASDVHYLYEALLEHYQEG-----SSAGIEGYS 329 (390)
T ss_pred hHHHHHHHHHHHHHHHHhccC-----hHHHHHHHH
Confidence 999999999999997765422 123567898
No 46
>PRK07588 hypothetical protein; Provisional
Probab=99.94 E-value=5.9e-25 Score=233.53 Aligned_cols=304 Identities=15% Similarity=0.093 Sum_probs=175.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~- 188 (546)
||+||||| +|+++|+.|+++|++|+|+||.+..+. ...+.+++..++.|+++|++++ +.+ ..+....+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~--l~~---~~~~~~~~~~~~~ 76 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQ--LRE---AGYQIEHVRSVDP 76 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHH--HHh---ccCCccceEEEcC
Confidence 79999965 699999999999999999999876543 2456788889999999999753 211 111111111111
Q ss_pred -Ccc---cc---ccccc---cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027 189 -KGE---IW---VEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (546)
Q Consensus 189 -~~~---l~---~~~~l---~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG 258 (546)
+.. +. ..... .+.+.+..|.+.|.+++. .|++++.+++|+++..++++++|++++|++++|++||+|||
T Consensus 77 ~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG 155 (391)
T PRK07588 77 TGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG 155 (391)
T ss_pred CCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence 000 00 00111 146889999999988664 47899999999999998999999998998999999999999
Q ss_pred CChHHHHHhcCCCC-CCe-eeeEEEEE-eeccC--CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEc
Q 009027 259 NFSPVVKQIRSGRK-PDG-VCLVVGSC-ARGFK--DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY 333 (546)
Q Consensus 259 ~~S~vr~ql~~~~~-~~~-~~~~vg~~-~~~~~--~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~ 333 (546)
.+|.+|+++..... +.. ....+..+ ...+. .......+. + ...++. .+|..++ ...+++..
T Consensus 156 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~-~g~~~~-~~p~~~~---~~~~~~~~ 221 (391)
T PRK07588 156 LHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYN---------E-VGRQVA-RVALRGD---RTLFLFIF 221 (391)
T ss_pred CCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEe---------C-CCCEEE-EEecCCC---CeEEEEEE
Confidence 99999997643221 111 11011010 11111 000001110 0 011222 4565544 22233322
Q ss_pred cCCCC----CCccHHHHHHHHHHh-CccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027 334 IDPQA----GSPKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (546)
Q Consensus 334 ~~~~~----~~~~l~~l~~~~~~~-lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~ 408 (546)
..... ......+.+.+.+.. .+....+ ++.+...... .+.+.......++..+|++|+|||||.++|+.|||.
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~ 299 (391)
T PRK07588 222 RAEHDNPPLTPAEEKQLLRDQFGDVGWETPDI-LAALDDVEDL-YFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGS 299 (391)
T ss_pred EcCCccccCCHHHHHHHHHHHhccCCccHHHH-HHhhhcccch-heeeeeeeccCccccCCEEEEEccccCCCCccCCcH
Confidence 11111 111222223222221 1111111 0111000000 011111112235678999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 409 g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|++++|+..|++.|..+. + + ....|+.|+
T Consensus 300 n~aieDa~~La~~L~~~~--~--~--~~~al~~Y~ 328 (391)
T PRK07588 300 GLAITEAYVLAGELARAG--G--D--HRRAFDAYE 328 (391)
T ss_pred HHHHHHHHHHHHHHHhcc--C--C--HHHHHHHHH
Confidence 999999999998886422 1 1 224578899
No 47
>PLN02985 squalene monooxygenase
Probab=99.94 E-value=1.1e-23 Score=231.17 Aligned_cols=312 Identities=16% Similarity=0.193 Sum_probs=173.5
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC-CCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcc
Q 009027 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRC 184 (546)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~-~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v 184 (546)
...+|||+||||| +|+++|+.|+++|++|+|+||... +.......++++.++.|+++|+++. ++...........+
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~--l~~~~~~~~~~~~v 117 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDC--LEGIDAQKATGMAV 117 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcch--hhhccCcccccEEE
Confidence 3447999999965 699999999999999999999753 2222344688999999999999874 22211111110011
Q ss_pred cccCCcc--cccc--------ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCe---EEEEEcCCc--EE
Q 009027 185 GFEGKGE--IWVE--------DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA---AVLLLAEGK--IL 248 (546)
Q Consensus 185 ~f~~~~~--l~~~--------~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg---v~V~~~~g~--~i 248 (546)
+.++.. +..+ ...++.+++.+|.+.|.+++.+. ++++.++ +++++..+++. +++...+|+ ++
T Consensus 118 -~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~ 195 (514)
T PLN02985 118 -YKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTA 195 (514)
T ss_pred -EECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEE
Confidence 011111 0000 12346789999999999999876 5677755 57776655543 333334554 57
Q ss_pred EcCEEEEecCCChHHHHHhcCCCCCCeeeeEEEEEeec--cCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027 249 SSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (546)
Q Consensus 249 ~ArlVV~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~--~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~ 326 (546)
+|++||+|||.+|.+|++++...+...... ++..... .+......+++. ..+.+. .+|..++ .
T Consensus 196 ~AdLVVgADG~~S~vR~~l~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~l-~ypi~~~---~ 260 (514)
T PLN02985 196 LAPLTVVCDGCYSNLRRSLNDNNAEVLSYQ-VGYISKNCRLEEPEKLHLIMS----------KPSFTM-LYQISST---D 260 (514)
T ss_pred ECCEEEECCCCchHHHHHhccCCCcceeEe-EEEEEccccCCCCCcceEEcC----------CCceEE-EEEeCCC---e
Confidence 899999999999999999975433211111 1111111 111111222221 012222 4566544 2
Q ss_pred eEEEEEccCCC-CC--CccHHHHHHHHH-HhCc-ccccc---ccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCC
Q 009027 327 TTYMFTYIDPQ-AG--SPKLEELLERYW-DLMP-EYQGV---TLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG 398 (546)
Q Consensus 327 ~~~l~~~~~~~-~~--~~~l~~l~~~~~-~~lp-~~~~~---~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~ 398 (546)
...+....... +. +..+.+.+++.. ..+| .+++. ..++.. .....|...........+|++|+|||||
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~----~~~~~p~~~l~~~~~~~~~vvLiGDAaH 336 (514)
T PLN02985 261 VRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGA----HIKVVPTKRMSATLSDKKGVIVLGDAFN 336 (514)
T ss_pred EEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhccccc----ceeecCcccccccccCCCCEEEEecccc
Confidence 22222221111 10 112222222211 1111 11110 001100 0112343332222345689999999999
Q ss_pred CCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhh-HHHHhhhh
Q 009027 399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYS-LSLLNPYM 443 (546)
Q Consensus 399 ~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~-l~~L~~Ye 443 (546)
++||++|||.++++.|+..|++.|...-. ..+.++ .+.|+.|+
T Consensus 337 ~~~P~~GQGmn~AleDA~vLa~lL~~~~~--~~~~~~~~~aL~~y~ 380 (514)
T PLN02985 337 MRHPAIASGMMVLLSDILILRRLLQPLSN--LGNANKVSEVIKSFY 380 (514)
T ss_pred cCCCCccccHhHHHHHHHHHHHHhhhccc--ccchhHHHHHHHHHH
Confidence 99999999999999999999999876311 012222 35678898
No 48
>PRK05868 hypothetical protein; Validated
Probab=99.94 E-value=1.7e-24 Score=228.88 Aligned_cols=302 Identities=17% Similarity=0.121 Sum_probs=175.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc-
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE- 187 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~- 187 (546)
.||+||||| +|+++|+.|+++|++|+|+||++.++.. ....+++..++.|+++|+++. +++. .... ..+.|.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~--~~~~-~~~~--~~~~~~~ 76 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAA--AQEH-KTRI--RGASFVD 76 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHH--HHhh-ccCc--cceEEEe
Confidence 489999965 6999999999999999999999876643 335678889999999999753 2211 1011 011110
Q ss_pred -CCcccc-------ccc---cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEe
Q 009027 188 -GKGEIW-------VED---ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (546)
Q Consensus 188 -~~~~l~-------~~~---~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~A 256 (546)
.+..+. ... ...+.+.+..|.+.|.+.+ ..|++++.++++++++.++++++|++++|++++|++||+|
T Consensus 77 ~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgA 155 (372)
T PRK05868 77 RDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGA 155 (372)
T ss_pred CCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEEC
Confidence 000000 000 0124577888888776543 5689999999999999888899999999999999999999
Q ss_pred cCCChHHHHHhcCCCC-CCe-eeeEE--EEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE
Q 009027 257 MGNFSPVVKQIRSGRK-PDG-VCLVV--GSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (546)
Q Consensus 257 DG~~S~vr~ql~~~~~-~~~-~~~~v--g~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~ 332 (546)
||.+|.+|+++..... +.. ..... ..+....+.+....++. +.+. .+. ++|..++. ....++.
T Consensus 156 DG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------g~~~-~~~-~~~~~~~~--~~~~~~~ 222 (372)
T PRK05868 156 DGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHY---------GDST-MAG-VYSARNNT--EARAALA 222 (372)
T ss_pred CCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEe---------cCCc-EEE-EEecCCCC--ceEEEEE
Confidence 9999999999854321 111 10000 00000000000001111 1111 222 45555331 2222222
Q ss_pred ccCCC--CC---Cc-cHHHHHHHHHHh---CccccccccCcceEeeeeeeeec-cccCCCCCccCCcEEEeCCCCCCCCC
Q 009027 333 YIDPQ--AG---SP-KLEELLERYWDL---MPEYQGVTLDNLEIQRVIYGIFP-TYRDSPLPAAFNRILQFGDASGIQSP 402 (546)
Q Consensus 333 ~~~~~--~~---~~-~l~~l~~~~~~~---lp~~~~~~l~~~~~~~~~~g~~P-~~~~~~~~~~~~rvlLVGDAA~~v~P 402 (546)
+.... .+ .+ ..+++.+.|... .+.+... +.... . -+++ +......+++.+||+|+|||||.++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~-~~~~~--~---~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P 296 (372)
T PRK05868 223 FMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHY-MRSAP--D---FYFDEMSQILMDRWSRGRVALVGDAGYCCSP 296 (372)
T ss_pred EecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhh-cccCC--c---eeeccceEEecCCCCCCCeeeeecccccCCC
Confidence 22111 01 11 233344443211 1222111 01100 0 0122 22112236678999999999999999
Q ss_pred CCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 403 lsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
++|||.|+++.|+..|++.|... .+ + --..|+.||
T Consensus 297 ~~GqGa~~AleDa~~La~~L~~~--~~--~--~~~al~~ye 331 (372)
T PRK05868 297 LSGQGTSVALLGAYILAGELKAA--GD--D--YQLGFANYH 331 (372)
T ss_pred ccCccHHHHHHHHHHHHHHHHhc--CC--C--HHHHHHHHH
Confidence 99999999999999999988542 11 1 123568899
No 49
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.94 E-value=1.9e-24 Score=229.67 Aligned_cols=308 Identities=14% Similarity=0.132 Sum_probs=186.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
..||+||||| +|+++|..|+++|++|+|+||.+.++.. +...++++.++.|+.+|+++.. .+. ......+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~--~~~---~~~~~~~~~~ 78 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAA--RQR---AVFTDHLTMM 78 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHH--Hhh---ccCCcceEEE
Confidence 5799999965 6999999999999999999999876543 3457889999999999997542 111 1111111111
Q ss_pred C---Ccc---cccc----ccc---cceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEE
Q 009027 188 G---KGE---IWVE----DIL---NLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (546)
Q Consensus 188 ~---~~~---l~~~----~~l---~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlV 253 (546)
. +.. +... ..+ ...+++..|.+.|.+++.+.+ ++++.+++++++..+++++.|.+.+|++++|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 158 (396)
T PRK08163 79 DAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDAL 158 (396)
T ss_pred eCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEE
Confidence 0 000 0000 001 135899999999999998775 7999999999999888889998888889999999
Q ss_pred EEecCCChHHHHHhcCC-CCCCeeeeEEEEEe-eccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027 254 IDAMGNFSPVVKQIRSG-RKPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (546)
Q Consensus 254 V~ADG~~S~vr~ql~~~-~~~~~~~~~vg~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~ 331 (546)
|+|||.+|.+|+++... ..+.+.....+... ..++.. . .........+ ...++| .||..++. ...+++
T Consensus 159 V~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~-~-----~~~~~~~~~g-~~~~~~-~~p~~~g~--~~~~~~ 228 (396)
T PRK08163 159 IGCDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPED-L-----RINAPVLWAG-PHCHLV-HYPLRGGE--QYNLVV 228 (396)
T ss_pred EECCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcch-h-----ccCccEEEEc-CCceEE-EEEecCCe--EEEEEE
Confidence 99999999999987322 12222111111111 011100 0 0000000001 123445 57776541 222222
Q ss_pred EccCCCC-----CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCC-CCccCCcEEEeCCCCCCCCCCCC
Q 009027 332 TYIDPQA-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSPVSF 405 (546)
Q Consensus 332 ~~~~~~~-----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~~~~rvlLVGDAA~~v~Plsg 405 (546)
.+..... ...+.+++.+.|....|.+... ++... .+..++.+...+ .++..+|++|+|||||.++|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~G 303 (396)
T PRK08163 229 TFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQM-LDKPT----SWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMA 303 (396)
T ss_pred EECCCCCcccccCCCCHHHHHHHHcCCChHHHHH-HhcCC----ceeEccccCCCcccccccCcEEEEecccccCCcchh
Confidence 2211110 1124455555554445544332 11111 011122222112 25667999999999999999999
Q ss_pred CcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 406 ~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
||.|++++|+..|++.|... .+ + --..|+.|+
T Consensus 304 qG~n~ai~Da~~La~~L~~~--~~--~--~~~al~~y~ 335 (396)
T PRK08163 304 QGACMALEDAVTLGKALEGC--DG--D--AEAAFALYE 335 (396)
T ss_pred ccHHHHHHHHHHHHHHHHhc--cc--c--HHHHHHHHH
Confidence 99999999999999887542 11 1 124578899
No 50
>PRK06126 hypothetical protein; Provisional
Probab=99.94 E-value=1.8e-24 Score=239.80 Aligned_cols=309 Identities=15% Similarity=0.175 Sum_probs=181.6
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhh-hcc------
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA-TKF------ 179 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~-~~~------ 179 (546)
.++||+|||| ++|+++|+.|+++|++|+|+||++.+.. .+...+++++++.|+++|++++ +.+.-. ..+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~--l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADE--VRSAGLPVDYPTDIAY 83 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHH--HHhhcCCccccCCceE
Confidence 3689999996 5699999999999999999999876543 4567799999999999999754 221100 000
Q ss_pred ----CCC---cccccCCcc-c---------cccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEE
Q 009027 180 ----NPN---RCGFEGKGE-I---------WVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLL 241 (546)
Q Consensus 180 ----~~~---~v~f~~~~~-l---------~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~ 241 (546)
... .+.+..... . +......+.+++..|++.|.+++.+. |++++++++|+++..++++++++
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~ 163 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTAT 163 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEE
Confidence 000 011100000 0 00011235688999999999999765 78999999999999988888877
Q ss_pred Ec---CCc--EEEcCEEEEecCCChHHHHHhcCCCCCCe-eeeEEEEEee--ccCC---CceeeeeccCCcccccCCCCc
Q 009027 242 LA---EGK--ILSSHLIIDAMGNFSPVVKQIRSGRKPDG-VCLVVGSCAR--GFKD---NSTSDVIYSSSSVKKVGDSEV 310 (546)
Q Consensus 242 ~~---~g~--~i~ArlVV~ADG~~S~vr~ql~~~~~~~~-~~~~vg~~~~--~~~~---~~~~~i~~~~~~i~~~~~~~~ 310 (546)
+. +|+ +++|++||+|||.+|.||+++++...-.. ....+..... .... .......+...| +
T Consensus 164 ~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p-------~- 235 (545)
T PRK06126 164 VEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNP-------D- 235 (545)
T ss_pred EEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECC-------C-
Confidence 64 353 79999999999999999999986532111 0001111111 0000 000000000000 0
Q ss_pred ceEEEEecCCCCCccceEEEEE-ccCCCCC-CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCC
Q 009027 311 QLFWEAFPAGSGPLDRTTYMFT-YIDPQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFN 388 (546)
Q Consensus 311 ~~~W~~fp~~~g~~~~~~~l~~-~~~~~~~-~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~ 388 (546)
.... +++.... ..+.+. +...... ..+-.+..+.+.+.++. .. ..++... ..++.......++..+
T Consensus 236 ~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~i~~~--~~w~~~~~~a~~~~~g 303 (545)
T PRK06126 236 RRGV-LVAIDGR----DEWLFHQLRGGEDEFTIDDVDARAFVRRGVGE--DI---DYEVLSV--VPWTGRRLVADSYRRG 303 (545)
T ss_pred ccEE-EEEECCC----CeEEEEEecCCCCCCCCCHHHHHHHHHHhcCC--CC---CeEEEee--cccchhheehhhhccC
Confidence 0111 1222211 112222 1111111 11222222222222221 11 1111111 1233333344577889
Q ss_pred cEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 389 RILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 389 rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
||+|+|||||.++|+.|||+|+++.|+..|+..|...++. . + ....|+.|+
T Consensus 304 Rv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~-~-~--~~~lL~~Y~ 354 (545)
T PRK06126 304 RVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG-W-A--GPALLDSYE 354 (545)
T ss_pred CEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC-C-C--cHHHHhhhH
Confidence 9999999999999999999999999999999999877643 1 1 235678999
No 51
>PRK07236 hypothetical protein; Provisional
Probab=99.93 E-value=8.6e-24 Score=224.39 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=108.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcc--cccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r--~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
.+||+||||| +|+++|..|+++|++|+|+||.+.+...+ ...++++.++.|+++|+++..+. .+......+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~------~~~~~~~~~ 79 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADI------GVPSRERIY 79 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccc------ccCccceEE
Confidence 5899999965 69999999999999999999987543232 34578999999999999754211 111111111
Q ss_pred cC--CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 187 EG--KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 187 ~~--~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
.. +..+.........+.+..+.+.|.+.+ .+++++.+++|+++..++++++|++++|++++|++||+|||.+|.+|
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 80 LDRDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred EeCCCCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHH
Confidence 11 111111011112346677888877654 24589999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 009027 265 KQIR 268 (546)
Q Consensus 265 ~ql~ 268 (546)
+++.
T Consensus 158 ~~l~ 161 (386)
T PRK07236 158 AQLL 161 (386)
T ss_pred HHhC
Confidence 9984
No 52
>PRK06847 hypothetical protein; Provisional
Probab=99.93 E-value=2e-23 Score=220.14 Aligned_cols=304 Identities=18% Similarity=0.160 Sum_probs=180.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
..||+||||| +|+++|+.|+++|++|+|+||.+.++.. ....++++.++.|+++|+++. + ....+....+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~--~---~~~~~~~~~~~~~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDE--C---LEAGFGFDGVDLF 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHH--H---HHhCCCccceEEE
Confidence 5799999965 6999999999999999999998765432 334688999999999998643 1 1111111111111
Q ss_pred C--Ccc--------ccccc-cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEe
Q 009027 188 G--KGE--------IWVED-ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (546)
Q Consensus 188 ~--~~~--------l~~~~-~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~A 256 (546)
. +.. ...+. .....+++..|.+.|.+.+.+.|++++.+++++++..+++++.|.+.+|++++|++||+|
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~A 158 (375)
T PRK06847 79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGA 158 (375)
T ss_pred CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEEC
Confidence 0 000 00000 112468899999999999988899999999999999888889898888889999999999
Q ss_pred cCCChHHHHHhc-CCCCCC--eeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEc
Q 009027 257 MGNFSPVVKQIR-SGRKPD--GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY 333 (546)
Q Consensus 257 DG~~S~vr~ql~-~~~~~~--~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~ 333 (546)
||.+|.+|+++. ....+. +.....+.. ...+......++. + ....+. .+|..++ ..+++..
T Consensus 159 dG~~s~~r~~l~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~---------~-~~~~~~-~~p~~~~----~~~~~~~ 222 (375)
T PRK06847 159 DGLYSKVRSLVFPDEPEPEYTGQGVWRAVL-PRPAEVDRSLMYL---------G-PTTKAG-VVPLSED----LMYLFVT 222 (375)
T ss_pred cCCCcchhhHhcCCCCCceeccceEEEEEe-cCCCCccceEEEe---------C-CCcEEE-EEcCCCC----eEEEEEe
Confidence 999999999873 221111 111000100 0000000000110 0 112222 4565543 2223322
Q ss_pred cCC-CCC---CccHHHHHHHHHHhCcc--ccccccCcceEeeeeeeeeccccCC-CCCccCCcEEEeCCCCCCCCCCCCC
Q 009027 334 IDP-QAG---SPKLEELLERYWDLMPE--YQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSPVSFG 406 (546)
Q Consensus 334 ~~~-~~~---~~~l~~l~~~~~~~lp~--~~~~~l~~~~~~~~~~g~~P~~~~~-~~~~~~~rvlLVGDAA~~v~Plsg~ 406 (546)
... ... ...+.+.+++.+...+. .+.. .+.+.-... ....|.+... +.++..+|++|+|||||.++|++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~Gq 300 (375)
T PRK06847 223 EPRPDNPRIEPDTLAALLRELLAPFGGPVLQEL-REQITDDAQ-VVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQ 300 (375)
T ss_pred ccCcccccCChHHHHHHHHHHHhhcCchHHHHH-HHhcCCccc-eeeccHhhccCCCCccCCeEEEEechhccCCCCccc
Confidence 111 100 11233333333332221 1111 011100011 1133443321 2357789999999999999999999
Q ss_pred cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
|.|.+++|+..|++.|... . + .-..|+.|+
T Consensus 301 G~n~aieDA~~La~~L~~~----~-~--~~~al~~Y~ 330 (375)
T PRK06847 301 GAGMAIEDAIVLAEELARH----D-S--LEAALQAYY 330 (375)
T ss_pred cHHHHHHHHHHHHHHHhhC----C-c--HHHHHHHHH
Confidence 9999999999999887541 1 1 234578899
No 53
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.92 E-value=9e-23 Score=227.00 Aligned_cols=315 Identities=20% Similarity=0.193 Sum_probs=178.2
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CC-c---ccccCCHHHHHHHHHcCCCCcccchhhhh-h--c-
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GR-E---QEWNISRKELLELVESGILVEDDIDEATA-T--K- 178 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~-~~-~---r~~~Is~~~l~~L~~lGl~~~~~ie~~i~-~--~- 178 (546)
..++|+||||| +|+++|+.|+++|++|.|+||.+.. +. . +...|+++.++.|+++|++...++.+... . .
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 36899999975 6999999999999999999997632 11 1 34679999999999999753322221100 0 0
Q ss_pred --c-C--CCc--ccccCCccc-cccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEE
Q 009027 179 --F-N--PNR--CGFEGKGEI-WVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILS 249 (546)
Q Consensus 179 --~-~--~~~--v~f~~~~~l-~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ 249 (546)
+ . .+. +.|...... .......+.|+|..|++.|.+++ +. .++.+++|+++..++++++|++++|++++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~ 236 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAV---GEDVIRNESNVVDFEDSGDKVTVVLENGQRYE 236 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEEeCCEEEEEECCCCEEE
Confidence 0 0 000 111100000 00011235789999999997654 33 46788999999999999999998998999
Q ss_pred cCEEEEecCCChHHHHHhcCCCCC--CeeeeEEEEEeeccCC--CceeeeeccCCcccccCCCCcceEEEEecCCCCCcc
Q 009027 250 SHLIIDAMGNFSPVVKQIRSGRKP--DGVCLVVGSCARGFKD--NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD 325 (546)
Q Consensus 250 ArlVV~ADG~~S~vr~ql~~~~~~--~~~~~~vg~~~~~~~~--~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~ 325 (546)
|++||+|||.+|.+|+++....++ .+.+...+.+ ...+. .......+ .+ ..+++- .++..++ .
T Consensus 237 aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~-~~~p~~~~~~~~~~~--------~G-~~~~~v-~~~v~~g--~ 303 (668)
T PLN02927 237 GDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIA-DFIPADIESVGYRVF--------LG-HKQYFV-SSDVGGG--K 303 (668)
T ss_pred cCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEc-CCCcccccccceEEE--------Ec-CCeEEE-EEcCCCC--e
Confidence 999999999999999987432222 1111111111 10000 00000000 00 122221 2333322 1
Q ss_pred ceEEEEEccCCCC--C-C-ccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCC-CCccCCcEEEeCCCCCCC
Q 009027 326 RTTYMFTYIDPQA--G-S-PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQ 400 (546)
Q Consensus 326 ~~~~l~~~~~~~~--~-~-~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~~~~rvlLVGDAA~~v 400 (546)
...+.|. ..+.. . . ...+++.+.|-...|.+... +....... ...++++...+ .++..+||+|+|||||.+
T Consensus 304 ~~~~~f~-~~p~~~~~~~~~~~e~L~~~f~~w~~~v~el-I~~t~~~~--i~~~~iyd~~p~~~W~~grVvLiGDAAH~~ 379 (668)
T PLN02927 304 MQWYAFH-EEPAGGADAPNGMKKRLFEIFDGWCDNVLDL-LHATEEDA--ILRRDIYDRSPGFTWGKGRVTLLGDSIHAM 379 (668)
T ss_pred EEEEEEE-ECCccccccchhHHHHHHHHhccCCHHHHHH-HHhCcccc--ceeeeEEeccCCCccccCcEEEEcCccCCC
Confidence 1111111 11110 1 1 12233333322222333322 11110000 01223333222 256679999999999999
Q ss_pred CCCCCCcchhhHhhHHHHHHHHHHHHhCCC---CChhhHHHHhhhh
Q 009027 401 SPVSFGGFGSLTRHLGRLSTGVYEAVRGDF---VDSYSLSLLNPYM 443 (546)
Q Consensus 401 ~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~---l~~~~l~~L~~Ye 443 (546)
+|..|+|.++++.|+..|+..|..+++... ........|+.|+
T Consensus 380 ~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye 425 (668)
T PLN02927 380 QPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYE 425 (668)
T ss_pred CCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHH
Confidence 999999999999999999999988864310 0111234678999
No 54
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.92 E-value=2.3e-24 Score=220.10 Aligned_cols=322 Identities=16% Similarity=0.156 Sum_probs=211.1
Q ss_pred cccEEEEcc-hHHHHHHHHHHhC----CCeEEEEcCCCCCC----------CcccccCCHHHHHHHHHcCCCCcccchhh
Q 009027 110 TFDVIVCGG-TLGIFIATALSFK----GLRVAIVERNTLKG----------REQEWNISRKELLELVESGILVEDDIDEA 174 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~----G~rVlLlEr~~~~~----------~~r~~~Is~~~l~~L~~lGl~~~~~ie~~ 174 (546)
.|||||||| ++|.++|++|... -+||+|+|-...+. .+|.-.+|+.++..|+.+|+|+. +.+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~--i~~~ 113 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDH--IFHD 113 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHH--hhhh
Confidence 799999996 5699999999843 78999999773321 24556799999999999999964 2222
Q ss_pred hhhccC---------CCcccccCCccccccccccceeCHHHHHHHHHH--HHHh-cCCEEEeCceEEEEEEe--------
Q 009027 175 TATKFN---------PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKK--RFIS-LGGVIFEGYSVSSICTY-------- 234 (546)
Q Consensus 175 i~~~~~---------~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~--~a~~-~G~~v~~~t~v~~i~~~-------- 234 (546)
....++ ...+.|..+ ... ...++.+++..+...|.. ...+ ..+++...+++.++...
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~d-~~~--~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n 190 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDHD-NVG--IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN 190 (481)
T ss_pred ccccccceeeecccchhhhhhccc-ccc--ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence 222221 112233221 111 123678899988888883 3333 35799999999888662
Q ss_pred CCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhcCC---CCCCeeeeEE--EEEeeccCCCceeeeeccCCccc--ccCC
Q 009027 235 ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSG---RKPDGVCLVV--GSCARGFKDNSTSDVIYSSSSVK--KVGD 307 (546)
Q Consensus 235 ~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~~~---~~~~~~~~~v--g~~~~~~~~~~~~~i~~~~~~i~--~~~~ 307 (546)
.....+++.+|..+.+||+|+|||.||++|+..++. ..++....+. ..+.+...+....+.|...||+. |+++
T Consensus 191 ~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d 270 (481)
T KOG3855|consen 191 GMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD 270 (481)
T ss_pred cceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeeccccc
Confidence 224567788899999999999999999999988775 3454443321 22221122456778888999988 5666
Q ss_pred CCcceEEEEecCCCCCccceEEEEEccC---------------CCC---CC-----ccHHHHHHHHHHhCccccccc-c-
Q 009027 308 SEVQLFWEAFPAGSGPLDRTTYMFTYID---------------PQA---GS-----PKLEELLERYWDLMPEYQGVT-L- 362 (546)
Q Consensus 308 ~~~~~~W~~fp~~~g~~~~~~~l~~~~~---------------~~~---~~-----~~l~~l~~~~~~~lp~~~~~~-l- 362 (546)
+...++|..-|.... .|..+.+ +.. .. .....+-+..+.......+.. .
T Consensus 271 ~~s~LvWSts~~~a~------~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp 344 (481)
T KOG3855|consen 271 TLSSLVWSTSPENAS------ILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPP 344 (481)
T ss_pred ccccceeecCHHHHH------HHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCC
Confidence 778999976543211 1111100 000 00 001000111111110000100 0
Q ss_pred CcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhh
Q 009027 363 DNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPY 442 (546)
Q Consensus 363 ~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Y 442 (546)
.-+++.......||+.+.++..|+.+|+.|||||||-+||++|||.|++..|+..|.+.+.+|+.+|. +.++...|+.|
T Consensus 345 ~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~-DlgS~~~L~~y 423 (481)
T KOG3855|consen 345 SVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGL-DLGSVEHLEPY 423 (481)
T ss_pred eEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcc-cccchhhhhHH
Confidence 01122223335789998888899999999999999999999999999999999999999999999986 88888888999
Q ss_pred h
Q 009027 443 M 443 (546)
Q Consensus 443 e 443 (546)
+
T Consensus 424 ~ 424 (481)
T KOG3855|consen 424 E 424 (481)
T ss_pred H
Confidence 8
No 55
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.91 E-value=1e-22 Score=218.15 Aligned_cols=314 Identities=16% Similarity=0.173 Sum_probs=178.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhh---hccCCCccc
Q 009027 112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA---TKFNPNRCG 185 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G-~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~---~~~~~~~v~ 185 (546)
.|+||||| +|+++|..|+++| ++|+|+||.+..+.. ....++++.++.|+.+|+.+. ++.... ..+....+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~--~~~~~~~~~~~~~~~~~~ 79 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEA--YTQVADSTPAPWQDIWFE 79 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhH--HHHHhcCCCccCcceeEE
Confidence 58999975 5999999999998 699999998765532 334678999999999998643 221110 000000111
Q ss_pred ccCCc---cccc--ccccc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027 186 FEGKG---EIWV--EDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (546)
Q Consensus 186 f~~~~---~l~~--~~~l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~ 259 (546)
+.... .+.. ....+ ..++|..|.+.|.+.+. ...++.+++|+++..++++++|.+++|.+++|++||+|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~ 157 (414)
T TIGR03219 80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGI 157 (414)
T ss_pred EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCc
Confidence 11110 0000 00111 35789999999988764 35688899999999989999999988889999999999999
Q ss_pred ChHHHHHhcCC-----CCC--CeeeeEEEEEee-ccCCC-c---eeeeeccCCcccccCCCCcceEEEEecCCCCCccce
Q 009027 260 FSPVVKQIRSG-----RKP--DGVCLVVGSCAR-GFKDN-S---TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 327 (546)
Q Consensus 260 ~S~vr~ql~~~-----~~~--~~~~~~vg~~~~-~~~~~-~---~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~ 327 (546)
+|.+|+++... ..+ .+.+...+.+.. .+... . ..+-+.. .+.... + ..+.++ .||..++. ..
T Consensus 158 ~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~-~~p~~~g~--~~ 231 (414)
T TIGR03219 158 KSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVD-VPQMYL-G-LDGHIL-TFPVRQGR--LI 231 (414)
T ss_pred cHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccc-cceEEE-c-CCCeEE-EEECCCCc--EE
Confidence 99999987421 111 111111111110 01000 0 0000000 000001 1 123344 56776552 22
Q ss_pred EEEEEccCCC-------C-----CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccC-CCCCccCCcEEEeC
Q 009027 328 TYMFTYIDPQ-------A-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFG 394 (546)
Q Consensus 328 ~~l~~~~~~~-------~-----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLVG 394 (546)
.++....+.. . .....+++.+.|....|.++.+ ++... .. ..++++.. ...+++.+||+|+|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~~--~~--~~~~~~~~~~~~~w~~grv~LiG 306 (414)
T TIGR03219 232 NVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARAL-LECIP--AP--TLWALHDLAELPGYVHGRVALIG 306 (414)
T ss_pred EEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHH-HHhCC--CC--CceeeeecccccceeeCcEEEEE
Confidence 2222211110 0 0113445555443333333322 11111 00 01222221 12356779999999
Q ss_pred CCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 395 DASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 395 DAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
||||.+.|..|||.|+++.|+..|++.|......+. + --..|+.|+
T Consensus 307 DAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~-~--~~~al~~Ye 352 (414)
T TIGR03219 307 DAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAG-D--LPALLEAYD 352 (414)
T ss_pred cccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcc-h--HHHHHHHHH
Confidence 999999999999999999999999998876542211 1 123578999
No 56
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.90 E-value=5.4e-22 Score=209.99 Aligned_cols=277 Identities=21% Similarity=0.361 Sum_probs=178.7
Q ss_pred cEEEEcc-hHHHHHHHHH--HhCCCeEEEEcCCCCC--CCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 112 DVIVCGG-TLGIFIATAL--SFKGLRVAIVERNTLK--GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 112 DVIIVGG-g~G~~~Aa~L--A~~G~rVlLlEr~~~~--~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
||||||| ++|+++|..| ++.|++|+|||+++.. ...+.|..+...+. .+++++...++...+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~-----------~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLG-----------PLDSLVSHRWSGWRVYF 69 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccccc-----------chHHHHheecCceEEEe
Confidence 8999995 5799999999 8889999999988765 33345654332211 13455666666556666
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHHHH
Q 009027 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (546)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~q 266 (546)
.+...... ......|++..|++.|.+++. +++.++.+++|+++..+++++.|.+++|++++|++||||+|..|+..+.
T Consensus 70 ~~~~~~~~-~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~ 147 (374)
T PF05834_consen 70 PDGSRILI-DYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARP 147 (374)
T ss_pred CCCceEEc-ccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccccc
Confidence 54433222 112247999999999999998 6667888999999999999888999899999999999999988773322
Q ss_pred hcCCCCCCeeeeEEEEEee---c-cCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE--ccCCCC--
Q 009027 267 IRSGRKPDGVCLVVGSCAR---G-FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT--YIDPQA-- 338 (546)
Q Consensus 267 l~~~~~~~~~~~~vg~~~~---~-~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~--~~~~~~-- 338 (546)
.+. +. ..|...+ . |+ .... .++++. ..... .+.+++| +.|..++ ..++. +-...+
T Consensus 148 ~~~-----Q~--f~G~~v~~~~~~f~-~~~~-~lMD~r-~~~~~-~~~~F~Y-~lP~~~~-----~alvE~T~fs~~~~~ 210 (374)
T PF05834_consen 148 LGL-----QH--FYGWEVETDEPVFD-PDTA-TLMDFR-VPQSA-DGPSFLY-VLPFSED-----RALVEETSFSPRPAL 210 (374)
T ss_pred ccc-----ce--eEEEEEeccCCCCC-CCce-EEEEec-ccCCC-CCceEEE-EEEcCCC-----eEEEEEEEEcCCCCC
Confidence 211 11 1122211 1 11 1111 222221 11100 1356666 7898754 12221 111111
Q ss_pred CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHH
Q 009027 339 GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 418 (546)
Q Consensus 339 ~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~L 418 (546)
....+++.+.+|++.+ +....++.+.+.|.||+......+...++++.+|+||+++||.||++|..+.+.+..+
T Consensus 211 ~~~~~~~~l~~~l~~~------g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~i 284 (374)
T PF05834_consen 211 PEEELKARLRRYLERL------GIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAI 284 (374)
T ss_pred CHHHHHHHHHHHHHHc------CCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHH
Confidence 1225566666666542 2345566777889999954444556678899999999999999999988888776666
Q ss_pred HHHHHH
Q 009027 419 STGVYE 424 (546)
Q Consensus 419 ae~I~~ 424 (546)
++.+..
T Consensus 285 a~~l~~ 290 (374)
T PF05834_consen 285 ADALAK 290 (374)
T ss_pred HHHHhh
Confidence 655543
No 57
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.87 E-value=4.4e-21 Score=197.57 Aligned_cols=302 Identities=20% Similarity=0.177 Sum_probs=160.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
-+||||||| +|+++|+.|+|+|++|+|+|+...+|.. +..++.-+..+.|+.+|+-+. +.+... . ..+++-.++
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~--i~~~gi-p-~~~~v~~~~ 78 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQ--IREQGI-P-LGGRVLIHG 78 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHH--HHHhcC-c-ccceeeeec
Confidence 479999987 4999999999999999999998877754 345666668888988884211 111100 0 011111011
Q ss_pred --Ccc---ccc--cccccceeCHHHHHHHHHHHHHhcCCEEEeCc------eEEEEEEeCCeEEEEEcCCcEEEcCEEEE
Q 009027 189 --KGE---IWV--EDILNLGVSPAKLIEIVKKRFISLGGVIFEGY------SVSSICTYENAAVLLLAEGKILSSHLIID 255 (546)
Q Consensus 189 --~~~---l~~--~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t------~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ 255 (546)
+.+ +.. ++..-..+.+..+.+.+...+... .+|+.+. ....++......+|++.+|.++.+|++||
T Consensus 79 ~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dllig 157 (420)
T KOG2614|consen 79 DSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIG 157 (420)
T ss_pred CCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCC-CeeecccccccccccceeeecccccceecCCCcEEEeeEEEE
Confidence 111 111 111112244555555555554443 3555553 44444455556678888899999999999
Q ss_pred ecCCChHHHHHhcCC-CCCCeeeeEEEEEeeccC-CCce-eeeeccCCcc---cccCCCCcceEEEEecCCCCCccceEE
Q 009027 256 AMGNFSPVVKQIRSG-RKPDGVCLVVGSCARGFK-DNST-SDVIYSSSSV---KKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (546)
Q Consensus 256 ADG~~S~vr~ql~~~-~~~~~~~~~vg~~~~~~~-~~~~-~~i~~~~~~i---~~~~~~~~~~~W~~fp~~~g~~~~~~~ 329 (546)
|||+.|.||+.++.. ..++..|-..|... ++ .+.. ..++...+.- .+.+ +-..+|..|-... .+..
T Consensus 158 CDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~--~~~~~~~~~~vf~~~~~~~~~~~~~--~~~~~~y~~~~k~----~t~t 229 (420)
T KOG2614|consen 158 CDGAYSKVRKWLGFKEPRYDGSQAYRGLGF--IPNGIPFGKKVFAIYGNGLHSWPRP--GFHLIAYWFLDKS----LTST 229 (420)
T ss_pred cCchHHHHHHHhcccCCcceeEEEEeeeee--ccCCCCcccceecccCCeEEEcccC--CceEEEEEeecCC----cccc
Confidence 999999999999765 33444443222221 11 1111 1111110000 0000 1111221122111 1111
Q ss_pred EEE-ccCCCCCCccHHHHHHHHHHhCcccccccc-CcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 009027 330 MFT-YIDPQAGSPKLEELLERYWDLMPEYQGVTL-DNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (546)
Q Consensus 330 l~~-~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l-~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G 407 (546)
.|. ..++........++.+.+.+.+|+.-.... +.+. .++.. ..|......-+...++|+|+|||||.+-|.-|||
T Consensus 230 ~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~-~t~l~-~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG 307 (420)
T KOG2614|consen 230 DFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIV-RTPLA-DRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQG 307 (420)
T ss_pred cccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhh-hchhh-hcCCcCeeeeccCCCeEEEecccccccCCccccc
Confidence 110 111100011334555555555554433211 1111 11111 1111111111344569999999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHh
Q 009027 408 FGSLTRHLGRLSTGVYEAVR 427 (546)
Q Consensus 408 ~g~~lrd~~~Lae~I~~Al~ 427 (546)
.+.++.|+..|++.+.+|.+
T Consensus 308 ~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 308 GNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred ccchHHHHHHHHHHHHHhcc
Confidence 99999999999999999987
No 58
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.86 E-value=1.4e-19 Score=191.30 Aligned_cols=272 Identities=16% Similarity=0.207 Sum_probs=157.3
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
||+||||| +|+++|+.|+++ |++|+|+|+.+..+..+.|..+...+... + ...++.++...+....+.+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~---~---~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDA---Q---HAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchh---h---hhhhhhhheEeCCCCEEECcc
Confidence 89999965 699999999987 99999999987655555665433222111 0 001334444555444444432
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhc
Q 009027 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (546)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~ 268 (546)
... ..... -..|++..|.+.|.+++.. + ++.+++|+++ +++++++ ++|++++|++||+|||.+|+-....+
T Consensus 75 ~~~-~l~~~-Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~~ 145 (370)
T TIGR01789 75 YRR-KLKTA-YRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLKGG 145 (370)
T ss_pred hhh-hcCCC-ceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCccccce
Confidence 211 11111 2578999999999877643 3 7778999887 5666655 68889999999999999985222211
Q ss_pred CCCCCCeeeeEEEEEee---ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCC----CCc
Q 009027 269 SGRKPDGVCLVVGSCAR---GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA----GSP 341 (546)
Q Consensus 269 ~~~~~~~~~~~vg~~~~---~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~----~~~ 341 (546)
. + + ..|...+ .++ .+.. +++++..-+ .++.. |-++-|..++ ..++.+....+ ...
T Consensus 146 --~---Q-~-f~G~~~r~~~p~~-~~~~-~lMD~~~~q---~~g~~-F~Y~lP~~~~-----~~lvE~T~~s~~~~l~~~ 207 (370)
T TIGR01789 146 --F---Q-V-FLGREMRLQEPHG-LENP-IIMDATVDQ---LAGYR-FVYVLPLGSH-----DLLIEDTYYADDPLLDRN 207 (370)
T ss_pred --e---e-E-EEEEEEEEcCCCC-CCcc-EEEeeeccC---CCCce-EEEECcCCCC-----eEEEEEEeccCCCCCCHH
Confidence 1 1 1 1122221 111 1111 122221111 11222 3345677654 12222211111 123
Q ss_pred cHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccC---CCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHH
Q 009027 342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD---SPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 418 (546)
Q Consensus 342 ~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~---~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~L 418 (546)
.+++.+.+|.... . ....++.+.+.+.+|+... .+.....++++++|||||++||.||+||+.+++++..|
T Consensus 208 ~l~~~l~~~~~~~----g--~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~l 281 (370)
T TIGR01789 208 ALSQRIDQYARAN----G--WQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADAL 281 (370)
T ss_pred HHHHHHHHHHHHh----C--CCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHH
Confidence 5555566666433 1 1223344445578997432 11112356799999999999999999999999998888
Q ss_pred HHHH
Q 009027 419 STGV 422 (546)
Q Consensus 419 ae~I 422 (546)
++.+
T Consensus 282 a~~~ 285 (370)
T TIGR01789 282 AAQP 285 (370)
T ss_pred Hhcc
Confidence 8665
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.81 E-value=1.1e-19 Score=196.63 Aligned_cols=296 Identities=19% Similarity=0.205 Sum_probs=155.8
Q ss_pred cEEEEcc-hHHHHHHHHHHhCC---CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhh-----hcc---
Q 009027 112 DVIVCGG-TLGIFIATALSFKG---LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TKF--- 179 (546)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LA~~G---~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~-----~~~--- 179 (546)
||||||| ++|.++|+.|++.+ ++|+|||+...|+..-+....+.....+..+|+-+.+-+.++.. ..|
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w 80 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW 80 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence 7999996 57999999999998 99999999988875443355555666778888753311211110 001
Q ss_pred C--CC--------------ccccc---------------------------CCc-c----ccccccccceeCHHHHHHHH
Q 009027 180 N--PN--------------RCGFE---------------------------GKG-E----IWVEDILNLGVSPAKLIEIV 211 (546)
Q Consensus 180 ~--~~--------------~v~f~---------------------------~~~-~----l~~~~~l~~~V~~~~L~~~L 211 (546)
. .. .+.|. ++. . ...+...++.+|+.+|++.|
T Consensus 81 ~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L 160 (454)
T PF04820_consen 81 GERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFL 160 (454)
T ss_dssp SSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHH
T ss_pred CCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHH
Confidence 0 00 00000 000 0 00111234679999999999
Q ss_pred HHHHHhcCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEcCEEEEecCCChHHHHHh-cCCCC-CCeeeeEEEEEeecc
Q 009027 212 KKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQI-RSGRK-PDGVCLVVGSCARGF 287 (546)
Q Consensus 212 ~~~a~~~G~~v~~~t~v~~i~~~~dgv--~V~~~~g~~i~ArlVV~ADG~~S~vr~ql-~~~~~-~~~~~~~vg~~~~~~ 287 (546)
+++|.+.|+++++++ |+++..++++. .|.+++|++++||++|||+|.+|.+.++. +.+.. .....+.-...+...
T Consensus 161 ~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~ 239 (454)
T PF04820_consen 161 RRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQV 239 (454)
T ss_dssp HHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEEE
T ss_pred HHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEec
Confidence 999999999999885 77888877764 46777899999999999999999988773 22210 111110000111111
Q ss_pred C--C--CceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCccHHHHHHHHHHhCccccccccC
Q 009027 288 K--D--NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLD 363 (546)
Q Consensus 288 ~--~--~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~ 363 (546)
+ + ..+..+. .. ..+++| .+|..++ ..+++. +... ..+-.+.++++.+.++..... .
T Consensus 240 ~~~~~~~~~T~~~----a~------~~GW~W-~IPL~~~---~~~G~V-~s~~---~~s~~~A~~~l~~~l~~~~~~--~ 299 (454)
T PF04820_consen 240 PNEDPPEPYTRST----AF------EAGWIW-YIPLQNR---RGSGYV-YSSD---FISDDEAEAELLAYLGGSPEA--E 299 (454)
T ss_dssp E-SSCTTSSEEEE----EE------SSEEEE-EEEESSE---EEEEEE-EETT---TSHHHHHHHHHHHHHTCHCTT--S
T ss_pred CcCCCCCCceeEE----ec------CCceEE-EccCCCc---ceEEEE-eccc---cCCHHHHHHHHHHhcchhhhc--c
Confidence 1 1 0011100 01 358889 6888764 343222 2221 112233333444433322111 1
Q ss_pred cceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 364 NLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 364 ~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
. ...+...+ ...+...+|+++|||||++++||.++|+.+.+..+ +.|.+++..+..+. ..++.|+
T Consensus 300 ~-~~i~~~~g-------~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa----~~l~~~l~~~~~~~---~~~~~Yn 364 (454)
T PF04820_consen 300 P-RHIRFRSG-------RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAA----EALAEALPDDDFSP---AALDRYN 364 (454)
T ss_dssp C-EEEE-S-E-------EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHH----HHHHHTHHCTTCCH---HHHHHHH
T ss_pred h-hhhccccc-------chhhcccCCEEEEcchhhccCccccccHHHHHHHH----HHHHHhcccCCCCH---HHHHHHH
Confidence 1 11111111 13366789999999999999999999998887744 44555566554342 2446677
No 60
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.80 E-value=1.3e-17 Score=169.37 Aligned_cols=294 Identities=19% Similarity=0.216 Sum_probs=172.4
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCcccccCCHHHHHHHHHcCCCCcc-cchhhhhhccCCCc
Q 009027 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEWNISRKELLELVESGILVED-DIDEATATKFNPNR 183 (546)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~~~Is~~~l~~L~~lGl~~~~-~ie~~i~~~~~~~~ 183 (546)
.+.++||||||+| +|+++|++|+|.|.||.||||.- .|.+.-+.-+.++....|.+||+-+.. .|+...+..|
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy---- 117 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGY---- 117 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeee----
Confidence 4557999999976 59999999999999999999874 333222234667778889999986531 1222222222
Q ss_pred ccccCCcccccc--------ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE--cCCc--EEEc
Q 009027 184 CGFEGKGEIWVE--------DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK--ILSS 250 (546)
Q Consensus 184 v~f~~~~~l~~~--------~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~~g~--~i~A 250 (546)
.-|.++.+...| +.-+..+.+.+|.+.|++++.+..+.-+++.+|.++..+++-++ |+. +.|+ +..|
T Consensus 118 ~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~A 197 (509)
T KOG1298|consen 118 AIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFA 197 (509)
T ss_pred EEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEec
Confidence 122222221111 12245678889999999999988775566667888776666222 333 3333 7889
Q ss_pred CEEEEecCCChHHHHHhcCCCCCCeeeeEEEEEeec--cCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceE
Q 009027 251 HLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328 (546)
Q Consensus 251 rlVV~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~--~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~ 328 (546)
.|.|.|||..|.+||.+....-.+-....||.+..+ .+....++++++. |.. + .++|.... -+.
T Consensus 198 pLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~-psp---------i-l~Y~ISSt---EvR 263 (509)
T KOG1298|consen 198 PLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILSK-PSP---------I-LVYQISST---EVR 263 (509)
T ss_pred ceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEecC-CCc---------E-EEEEecch---heE
Confidence 999999999999999986432211001123443332 2233456666652 211 1 14565543 244
Q ss_pred EEEEccCCCCCCccHHHHHHHHHHh--Ccccccc---c----cCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCC
Q 009027 329 YMFTYIDPQAGSPKLEELLERYWDL--MPEYQGV---T----LDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399 (546)
Q Consensus 329 ~l~~~~~~~~~~~~l~~l~~~~~~~--lp~~~~~---~----l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~ 399 (546)
.++.+....- .......+..|... -|++... . .++-.++ ..|..+..+......+++++|||-.+
T Consensus 264 cl~~v~g~~~-Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~ir-----smpn~~mpa~~~~~~G~illGDAfNM 337 (509)
T KOG1298|consen 264 CLVDVPGQKL-PSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIR-----SMPNSSMPATLNDKKGVILLGDAFNM 337 (509)
T ss_pred EEEecCcccC-CcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchh-----cCccccCCCCcCCCCceEEEcccccc
Confidence 4554432110 00111111222211 1111100 0 0111111 34555444445667899999999999
Q ss_pred CCCCCCCcchhhHhhHHHHHHHHHH
Q 009027 400 QSPVSFGGFGSLTRHLGRLSTGVYE 424 (546)
Q Consensus 400 v~Plsg~G~g~~lrd~~~Lae~I~~ 424 (546)
-||++|+|+-.++-|+..|-..|..
T Consensus 338 RHPltggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 338 RHPLTGGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred cCCccCCceEeehhHHHHHHHHhcc
Confidence 9999999999999888877776654
No 61
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.78 E-value=1.1e-17 Score=192.00 Aligned_cols=295 Identities=15% Similarity=0.105 Sum_probs=159.5
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhh--ccCCCccc
Q 009027 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATAT--KFNPNRCG 185 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~--~~~~~~v~ 185 (546)
+|+||||| +|+++|+.|+++ |++|+|+||++..+.. ....++++.++.|..++ +.-.+.+... .+....+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~---~~~~~~~~~~~~~~~~~~~~ 78 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAAD---PVSAAAIGDAFNHWDDIDVH 78 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcC---HHHHHHHHHhcccCCceEEE
Confidence 69999965 688999999998 9999999998865432 23468888887776654 1101111110 11111122
Q ss_pred ccCCcccccccccc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 186 FEGKGEIWVEDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 186 f~~~~~l~~~~~l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
+.+ ... ...... +.++|..|++.|.+++.+.|++++.+++++++.. ..+++++||+|||.+|.+|
T Consensus 79 ~~g-~~~-~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~vR 144 (765)
T PRK08255 79 FKG-RRI-RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSRIR 144 (765)
T ss_pred ECC-EEE-EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHHHH
Confidence 221 111 111111 3589999999999999999999999998876531 1257999999999999999
Q ss_pred HHhcCCCCCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEE-EecCCCCCccceEEEEEccCC-----CC
Q 009027 265 KQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE-AFPAGSGPLDRTTYMFTYIDP-----QA 338 (546)
Q Consensus 265 ~ql~~~~~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~-~fp~~~g~~~~~~~l~~~~~~-----~~ 338 (546)
+++.....+...........-+.... ...+-+...+. ..+++|. .||..++ ...+++...+. ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~------~~g~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~~ 214 (765)
T PRK08255 145 TRYADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEET------EHGWFQAHAYRFDDD---TSTFIVETPEEVWRAAGL 214 (765)
T ss_pred HHHHhhcCCceecCCCceEEecCCCc-ccceeEEEEec------CCceEEEEEeeeCCC---CcEEEEEcCHHHHHhcCC
Confidence 98743211110000000001011100 00000000000 1233332 3565543 23333333210 00
Q ss_pred C---Cc-cHHHHHHHHHHhCccccccccCcceE-eeeeeeeeccccCCCCCccCCc----EEEeCCCCCCCCCCCCCcch
Q 009027 339 G---SP-KLEELLERYWDLMPEYQGVTLDNLEI-QRVIYGIFPTYRDSPLPAAFNR----ILQFGDASGIQSPVSFGGFG 409 (546)
Q Consensus 339 ~---~~-~l~~l~~~~~~~lp~~~~~~l~~~~~-~~~~~g~~P~~~~~~~~~~~~r----vlLVGDAA~~v~Plsg~G~g 409 (546)
. .. ..+.+.+.|-...+....+ ..... ....+..++. ....+++.+| ++|+|||||.++|..|+|.|
T Consensus 215 ~~~~~~~~~~~l~~~f~~~~~~~~li--~~~~~~~~~~w~~~~~--~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~ 290 (765)
T PRK08255 215 DEMSQEESIAFCEKLFADYLDGHPLM--SNASHLRGSAWINFPR--VVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTK 290 (765)
T ss_pred ccCCHHHHHHHHHHHhHHhcCCCccc--ccccccccceeeecce--eccCCCccCCCcccEEEEEcCcccCCCCcchhHH
Confidence 0 11 2222222232333322111 11110 0001112221 1223566778 99999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027 410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (546)
Q Consensus 410 ~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye 443 (546)
+++.|+..|++.|..... ..-..|+.|+
T Consensus 291 ~aieDa~~La~~L~~~~~------~~~~al~~ye 318 (765)
T PRK08255 291 LALEDAIELARCLHEHPG------DLPAALAAYE 318 (765)
T ss_pred HHHHHHHHHHHHHHHccc------cHHHHHHHHH
Confidence 999999999999865311 1234567888
No 62
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.42 E-value=4.3e-12 Score=127.62 Aligned_cols=134 Identities=23% Similarity=0.279 Sum_probs=94.4
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc---cc-----ccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE---QE-----WNISRKELLELVESGILVEDDIDEATATKFN 180 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~---r~-----~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~ 180 (546)
+|||+|||| ++|+++|+.|+++|++|+|+||+..++.. .. ..+.......|.++|+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~-------------- 90 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIR-------------- 90 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCC--------------
Confidence 699999995 57999999999999999999998766421 00 11222223344444431
Q ss_pred CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eE---EEEEc---------CCcE
Q 009027 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLLA---------EGKI 247 (546)
Q Consensus 181 ~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv---~V~~~---------~g~~ 247 (546)
|... .+. .+.+++..+...|.+++.+.|++++.+++|+++..+++ .+ ++... +..+
T Consensus 91 -----~~~~----~~g--~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~ 159 (257)
T PRK04176 91 -----YKEV----EDG--LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT 159 (257)
T ss_pred -----ceee----cCc--ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE
Confidence 1000 000 13468889999999999999999999999999987666 22 22210 1247
Q ss_pred EEcCEEEEecCCChHHHHHhc
Q 009027 248 LSSHLIIDAMGNFSPVVKQIR 268 (546)
Q Consensus 248 i~ArlVV~ADG~~S~vr~ql~ 268 (546)
++|++||+|+|++|.+.+.+.
T Consensus 160 i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 160 IEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred EEcCEEEEEeCCCcHHHHHHH
Confidence 999999999999999998773
No 63
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.40 E-value=7.1e-12 Score=125.77 Aligned_cols=132 Identities=27% Similarity=0.430 Sum_probs=92.2
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCCcccchhhhhhcc
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~---------Is~~~l~~L~~lGl~~~~~ie~~i~~~~ 179 (546)
+|||+|||| ++|+++|+.|+++|++|+||||+..++.. .|. +.....+.|+++|+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg-~~~gg~~~~~~~~~~~~~~~l~~~gi~------------- 86 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG-SWGGGMLFSKIVVEKPAHEILDEFGIR------------- 86 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc-ccCCCcceecccccchHHHHHHHCCCC-------------
Confidence 699999995 57999999999999999999999876532 121 111112223222221
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EE-EEEc-----------CC
Q 009027 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AV-LLLA-----------EG 245 (546)
Q Consensus 180 ~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~-V~~~-----------~g 245 (546)
|.... + ..+..++..+.+.|.+++.++|++++.++++.++..++++ +. |.+. +.
T Consensus 87 ------~~~~~-----~-g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~ 154 (254)
T TIGR00292 87 ------YEDEG-----D-GYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDP 154 (254)
T ss_pred ------eeecc-----C-ceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCC
Confidence 10000 0 0123577889999999999999999999999999887762 21 2221 12
Q ss_pred cEEEcCEEEEecCCChHHHHHh
Q 009027 246 KILSSHLIIDAMGNFSPVVKQI 267 (546)
Q Consensus 246 ~~i~ArlVV~ADG~~S~vr~ql 267 (546)
.+++|++||+|+|+.|.+.+.+
T Consensus 155 ~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 155 LTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred EEEEcCEEEEeecCCchHHHHH
Confidence 4799999999999999999876
No 64
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.31 E-value=7.6e-12 Score=120.10 Aligned_cols=131 Identities=27% Similarity=0.383 Sum_probs=86.1
Q ss_pred cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccc---------cCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 009027 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---------NISRKELLELVESGILVEDDIDEATATKF 179 (546)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~---------~Is~~~l~~L~~lGl~~~~~ie~~i~~~~ 179 (546)
+|||+||| ||+|+++|..||++|+||+++||+..++.. .| -+.......|+++|+-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg-~~~Gg~lf~~iVVq~~a~~iL~elgi~------------- 82 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG-MWGGGMLFNKIVVQEEADEILDELGIP------------- 82 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT-TTS-CTT---EEEETTTHHHHHHHT---------------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc-ccccccccchhhhhhhHHHHHHhCCce-------------
Confidence 69999999 567999999999999999999998876521 12 1111223344444431
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC-CeE---EEEEc---------CCc
Q 009027 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAA---VLLLA---------EGK 246 (546)
Q Consensus 180 ~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv---~V~~~---------~g~ 246 (546)
+... .+ .-+.+|...+-..|..++.++|++++..+.|+++...+ +.+ ++..+ |.-
T Consensus 83 ------y~~~-----~~-g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl 150 (230)
T PF01946_consen 83 ------YEEY-----GD-GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL 150 (230)
T ss_dssp -------EE------SS-EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred ------eEEe-----CC-eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence 1000 01 12457888999999999999999999999999998887 433 33332 234
Q ss_pred EEEcCEEEEecCCChHHHHH
Q 009027 247 ILSSHLIIDAMGNFSPVVKQ 266 (546)
Q Consensus 247 ~i~ArlVV~ADG~~S~vr~q 266 (546)
+++|++||||+|+.+++.+.
T Consensus 151 ~i~ak~ViDaTGHda~v~~~ 170 (230)
T PF01946_consen 151 TIRAKVVIDATGHDAEVVRV 170 (230)
T ss_dssp EEEESEEEE---SSSSSTSH
T ss_pred eEEEeEEEeCCCCchHHHHH
Confidence 89999999999999876653
No 65
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.30 E-value=4.8e-11 Score=114.02 Aligned_cols=132 Identities=28% Similarity=0.379 Sum_probs=95.1
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCCcccchhhhhhcc
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~---------Is~~~l~~L~~lGl~~~~~ie~~i~~~~ 179 (546)
+-||+|||| |+|+++|+.||++|+||+++||+-.++. .-|. +-...-++|+++|+- |
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG-G~w~GGmlf~~iVv~~~a~~iL~e~gI~------------y 96 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG-GIWGGGMLFNKIVVREEADEILDEFGIR------------Y 96 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC-cccccccccceeeecchHHHHHHHhCCc------------c
Confidence 469999995 6799999999999999999999876552 1121 112233445544431 1
Q ss_pred CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-e---EEEEEc---------CCc
Q 009027 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-A---AVLLLA---------EGK 246 (546)
Q Consensus 180 ~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-g---v~V~~~---------~g~ 246 (546)
... ++. -+..|+..+-..|..++.++|++|+..+.|+++...++ + +++..+ |.-
T Consensus 97 -------e~~-----e~g-~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl 163 (262)
T COG1635 97 -------EEE-----EDG-YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPL 163 (262)
T ss_pred -------eec-----CCc-eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcc
Confidence 000 011 14567888999999999999999999999999988777 3 333321 344
Q ss_pred EEEcCEEEEecCCChHHHHHh
Q 009027 247 ILSSHLIIDAMGNFSPVVKQI 267 (546)
Q Consensus 247 ~i~ArlVV~ADG~~S~vr~ql 267 (546)
+++|++||||+|+.-++.+-+
T Consensus 164 ~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 164 TIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred eeeEEEEEeCCCCchHHHHHH
Confidence 899999999999999988765
No 66
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.29 E-value=1.8e-10 Score=115.15 Aligned_cols=173 Identities=21% Similarity=0.249 Sum_probs=105.8
Q ss_pred EcCEEEEecCCChHHHHHhcCCCCCCeeeeEEEEEeec--cCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027 249 SSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (546)
Q Consensus 249 ~ArlVV~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~--~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~ 326 (546)
.|+++|.|||..|.+|+++. ..++.-....+|...+. .+....++++... .+.++ +++.+.. .
T Consensus 1 ~A~LtivaDG~~S~fRk~l~-~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~----------~~pil-~YqI~~~---e 65 (276)
T PF08491_consen 1 FAPLTIVADGCFSKFRKELS-DNKPQVRSYFVGLILKDAPLPKPNHGHVILGK----------PGPIL-LYQISSN---E 65 (276)
T ss_pred CCCEEEEecCCchHHHHhhc-CCCCceeeeEEEEEEcCCCCCCCCceEEEEcC----------CCcEE-EEEcCCC---c
Confidence 37899999999999999997 33333333345555442 3345567776652 12334 5776654 3
Q ss_pred eEEEEEccCC-CCC--CccHHHHHHHHH-HhCccccccc----cCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCC
Q 009027 327 TTYMFTYIDP-QAG--SPKLEELLERYW-DLMPEYQGVT----LDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG 398 (546)
Q Consensus 327 ~~~l~~~~~~-~~~--~~~l~~l~~~~~-~~lp~~~~~~----l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~ 398 (546)
+..++.+... -+. +.++++.+.+.. -.+|+--+.. +++-.+ -..|..+..+.+...++++++|||++
T Consensus 66 tR~Lvdvp~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~ri-----rsMPn~~lp~~~~~~~G~vllGDA~n 140 (276)
T PF08491_consen 66 TRVLVDVPGPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRI-----RSMPNSFLPASPNWKPGVVLLGDAAN 140 (276)
T ss_pred eEEEEEeCCCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCc-----ceecccccCCCCCCCCCEEEEehhhc
Confidence 5666665432 111 224555444322 2344321111 112121 24566655555667799999999999
Q ss_pred CCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChh-hHHHHhhhh
Q 009027 399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSY-SLSLLNPYM 443 (546)
Q Consensus 399 ~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~-~l~~L~~Ye 443 (546)
+.||+||||+..++.|+..|.+.|... .+.-+.+ -.+.++.|.
T Consensus 141 mrHPLTGgGMTVAl~Dv~lL~~lL~~~--~dl~d~~~v~~~l~~f~ 184 (276)
T PF08491_consen 141 MRHPLTGGGMTVALNDVVLLRDLLSPI--PDLSDTKAVLEALKKFH 184 (276)
T ss_pred CcCCccccchhhHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHH
Confidence 999999999999999999999998876 1111222 245567776
No 67
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.24 E-value=9e-10 Score=114.12 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=57.9
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChHH-HHHhc
Q 009027 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV-VKQIR 268 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~v-r~ql~ 268 (546)
..+++..+.+.|.+.+.+.|++++.+++|+++..+++.++ |.+++|+ ++|+.||.|.|.+|+- .+.++
T Consensus 142 g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~ 211 (358)
T PF01266_consen 142 GVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLG 211 (358)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTT
T ss_pred ccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeeccc
Confidence 4589999999999999999999999999999999999998 9998887 9999999999999875 44443
No 68
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.22 E-value=1.9e-10 Score=119.27 Aligned_cols=159 Identities=22% Similarity=0.275 Sum_probs=103.7
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc------ccccCCHHH--HHHHHHcCCCCcccchhhhhhccC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRKE--LLELVESGILVEDDIDEATATKFN 180 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~------r~~~Is~~~--l~~L~~lGl~~~~~ie~~i~~~~~ 180 (546)
.+||||||| ++|+++|..++++|.+|+|||+.+-++.+ ..-|++..+ -+.|.+.+=-. .-+.+.+ .+|.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~-~fl~sal-~~ft 80 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNG-HFLKSAL-ARFT 80 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcc-hHHHHHH-HhCC
Confidence 689999996 57999999999999999999999877643 112444322 11222221000 0011111 1121
Q ss_pred CCc-ccccC--Ccccccc---ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 009027 181 PNR-CGFEG--KGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (546)
Q Consensus 181 ~~~-v~f~~--~~~l~~~---~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV 254 (546)
+.. +.|.. +..++.+ ..+...-....+.++|..++++.|++++.+++|.++..++++..|.+.+|.+|+|+-+|
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~li 160 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLI 160 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEE
Confidence 110 11110 0111111 11112235677899999999999999999999999999988999999889899999999
Q ss_pred EecCCCh-----------HHHHHhcCC
Q 009027 255 DAMGNFS-----------PVVKQIRSG 270 (546)
Q Consensus 255 ~ADG~~S-----------~vr~ql~~~ 270 (546)
-|.|..| ++++|+|..
T Consensus 161 lAtGG~S~P~lGstg~gy~iA~~~G~~ 187 (408)
T COG2081 161 LATGGKSWPKLGSTGFGYPIARQFGHT 187 (408)
T ss_pred EecCCcCCCCCCCCchhhHHHHHcCCc
Confidence 9999776 567777654
No 69
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.20 E-value=1e-08 Score=113.04 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=56.5
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC----cEEEcCEEEEecCCChH-HHHHh
Q 009027 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLIIDAMGNFSP-VVKQI 267 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g----~~i~ArlVV~ADG~~S~-vr~ql 267 (546)
.+++.++...+...+.+.|++++..++|+++..+++.+.|.+.++ .+++|+.||.|+|.+|. +++++
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 222 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV 222 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence 478899999999999999999999999999988877777776553 36999999999999986 54433
No 70
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.16 E-value=1.3e-08 Score=112.29 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=54.9
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---Cc--EEEcCEEEEecCCChH-HHHH
Q 009027 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSP-VVKQ 266 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g~--~i~ArlVV~ADG~~S~-vr~q 266 (546)
.||+.+|...+.+.+.+.|++++.+++|+++..+++.+.|++.+ |+ +++|+.||.|+|.+|. +.++
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~ 222 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDD 222 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhh
Confidence 47888888888888999999999999999998877777777653 43 7999999999999986 4443
No 71
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.11 E-value=5.5e-10 Score=119.35 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=79.6
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-------ccccCCHHHH---HHHHHcCCCCcccchhhhhhcc
Q 009027 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-------QEWNISRKEL---LELVESGILVEDDIDEATATKF 179 (546)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-------r~~~Is~~~l---~~L~~lGl~~~~~ie~~i~~~~ 179 (546)
|||+|||| ++|+++|+.+|+.|.+|+|+||++.++.+ |+ |++.... +.+...+- ...-+...+ ..|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrC-N~tn~~~~~~~~~~~~~~-~~~f~~~~l-~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRC-NLTNLNIDPSEFLSGYGR-NPKFLKSAL-KRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT--EEEETTSSGGGEECS-TB-TTTCTHHHH-HHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCc-cccccccchhhHhhhccc-chHHHHHHH-hcC
Confidence 89999996 56999999999999999999999876532 11 2211000 00000000 000000000 011
Q ss_pred CCC-cccccC--Cccccc-cc--cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCE
Q 009027 180 NPN-RCGFEG--KGEIWV-ED--ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHL 252 (546)
Q Consensus 180 ~~~-~v~f~~--~~~l~~-~~--~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~Arl 252 (546)
++. .+.|.. +-.... ++ ++...-....+.++|.+++.+.|++++.+++|.++...+++ +.|.++++.++.|+-
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 000 001100 000000 00 11112245678899999999999999999999999998888 788886777999999
Q ss_pred EEEecCCCh-----------HHHHHhcCC
Q 009027 253 IIDAMGNFS-----------PVVKQIRSG 270 (546)
Q Consensus 253 VV~ADG~~S-----------~vr~ql~~~ 270 (546)
||-|.|..| .+++++|..
T Consensus 158 vILAtGG~S~p~~GS~G~gy~~a~~lGh~ 186 (409)
T PF03486_consen 158 VILATGGKSYPKTGSDGSGYRIAKKLGHT 186 (409)
T ss_dssp EEE----SSSGGGT-SSHHHHHHHHTT--
T ss_pred EEEecCCCCccccCCCcHHHHHHHHCCCc
Confidence 999999876 456676644
No 72
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.09 E-value=3.4e-09 Score=111.97 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=59.0
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC-hHHHHHhcCCC
Q 009027 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF-SPVVKQIRSGR 271 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~-S~vr~ql~~~~ 271 (546)
..+++..+.+.|.+.+.+.|++++.+++|+++..+++.+.|.++++ +++|+.||.|.|.. |.+++.++...
T Consensus 140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~ 211 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEI 211 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCC
Confidence 4589999999999999999999999999999988888888887655 79999888888865 66887776543
No 73
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.06 E-value=2.1e-08 Score=103.73 Aligned_cols=303 Identities=21% Similarity=0.237 Sum_probs=158.8
Q ss_pred CCcccEEEEcc-hHHHHHHHHHH------hCCCeEEEEcCCCCCCCccc-c-cCCHHHHHHHHHcCCCCc--ccchhhhh
Q 009027 108 VGTFDVIVCGG-TLGIFIATALS------FKGLRVAIVERNTLKGREQE-W-NISRKELLELVESGILVE--DDIDEATA 176 (546)
Q Consensus 108 ~~~yDVIIVGG-g~G~~~Aa~LA------~~G~rVlLlEr~~~~~~~r~-~-~Is~~~l~~L~~lGl~~~--~~ie~~i~ 176 (546)
.+.+||+|||| |+|+++|+.|. .+-+||+|+||+..++.+-- . -|-+.++..|. -=|.+ .++.....
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~--P~wke~~apl~t~vT 151 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELL--PDWKEDGAPLNTPVT 151 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhC--cchhhcCCccccccc
Confidence 34799999995 67999999763 34789999999988764310 0 12233332221 00110 01111111
Q ss_pred hccCCCccccc-CCccccc------cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEE--EcC---
Q 009027 177 TKFNPNRCGFE-GKGEIWV------EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL--LAE--- 244 (546)
Q Consensus 177 ~~~~~~~v~f~-~~~~l~~------~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~--~~~--- 244 (546)
...+.|- ++..+.. .+.-|+.|.-..+.++|.++|.+.|++|+.+..+.++..++|+.+.. +.|
T Consensus 152 ----~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI 227 (621)
T KOG2415|consen 152 ----SDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGI 227 (621)
T ss_pred ----ccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccc
Confidence 1111111 1111111 22336888889999999999999999999999999998888865432 322
Q ss_pred ------------CcEEEcCEEEEecCCChHHHHHhcCCC------CCCeeeeEEEEEeeccC--CCceeeeeccCC-ccc
Q 009027 245 ------------GKILSSHLIIDAMGNFSPVVKQIRSGR------KPDGVCLVVGSCARGFK--DNSTSDVIYSSS-SVK 303 (546)
Q Consensus 245 ------------g~~i~ArlVV~ADG~~S~vr~ql~~~~------~~~~~~~~vg~~~~~~~--~~~~~~i~~~~~-~i~ 303 (546)
|-++.|+..|-|.|.+-.+.+|+-... .+....+-+.-+.+ ++ ++.-+++.-..+ |+.
T Consensus 228 ~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWe-i~~~~~~pG~v~HT~GwPl~ 306 (621)
T KOG2415|consen 228 SKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWE-IDPENHNPGEVAHTLGWPLD 306 (621)
T ss_pred cCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEe-cChhhcCCcceeeeccCccc
Confidence 337999999999999988888763221 11111111111111 11 122222211111 121
Q ss_pred ccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCc--cHHHHHHHHHHhCccccccccCcceEeeeeeeeecc---c
Q 009027 304 KVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP--KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPT---Y 378 (546)
Q Consensus 304 ~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~--~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~---~ 378 (546)
+ +.-.+-|.+.| .+. -.+.++..-.+ -.+| +.-+.|.++ +..|.++.+ ++.-+ +..++.-.+ .
T Consensus 307 ~--~tYGGsFlYh~--~d~--~VavGlVVgLd--Y~NP~lsP~~EFQk~-K~hP~i~~v-leGgk--~i~YgARaLNEGG 374 (621)
T KOG2415|consen 307 N--DTYGGSFLYHF--NDP--LVAVGLVVGLD--YKNPYLSPYKEFQKM-KHHPSISKV-LEGGK--RIAYGARALNEGG 374 (621)
T ss_pred C--CccCceeEEEc--CCC--eEEEEEEEEec--CCCCCCCHHHHHHHh-hcCcchhhh-hcCcc--eeeehhhhhccCC
Confidence 1 00111222222 222 12222222111 1123 333333332 356777765 33322 111221111 1
Q ss_pred cCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCC
Q 009027 379 RDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD 429 (546)
Q Consensus 379 ~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g 429 (546)
+++-.+...++=+|||=+|++++=--=-|-..+|.+.-..||.|-+|++..
T Consensus 375 fQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~ 425 (621)
T KOG2415|consen 375 FQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGL 425 (621)
T ss_pred cccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcC
Confidence 222235677888999999999865444666666666666678888888654
No 74
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.05 E-value=4.8e-09 Score=111.88 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=60.4
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH-HHHHhcCC
Q 009027 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG 270 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~~~ 270 (546)
..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|.+.++ +++|+.||.|+|.+|+ +++.++..
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 4578999999999999999999999999999988888888887666 7999999999999995 66666643
No 75
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.04 E-value=8.1e-09 Score=108.94 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=54.3
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
.+++.++...+.+.+.+.|++++.+++|+++..+++++.|.+++| +++|+.||.|+|..|.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 478889999898889889999999999999998888888887666 7999999999999865
No 76
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.00 E-value=1.1e-08 Score=108.90 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=103.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcc----------cccCCHH-------------HHHHHHHc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQ----------EWNISRK-------------ELLELVES 163 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G--~rVlLlEr~~~~~~~r----------~~~Is~~-------------~l~~L~~l 163 (546)
+|||+||||| +|+++|..|++.+ ++|+||||...++... ..+-+++ ..+.-+++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~ 82 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL 82 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 7999999987 5999999999998 9999999998765210 1111111 12223333
Q ss_pred CC-----------CCcccchhhhhhcc-----CCCc-ccccCC------cc---------ccccccccceeCHHHHHHHH
Q 009027 164 GI-----------LVEDDIDEATATKF-----NPNR-CGFEGK------GE---------IWVEDILNLGVSPAKLIEIV 211 (546)
Q Consensus 164 Gl-----------~~~~~ie~~i~~~~-----~~~~-v~f~~~------~~---------l~~~~~l~~~V~~~~L~~~L 211 (546)
++ +++++++.+ ...| ++.. +.+.+. ++ ++.+ -+..|+...+-..|
T Consensus 83 ~~~f~~~g~l~vA~~e~e~~~L-~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p--~~giV~~~~~t~~l 159 (429)
T COG0579 83 GIPFINCGKLSVATGEEEVERL-EKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVP--SGGIVDPGELTRAL 159 (429)
T ss_pred CCcccccCeEEEEEChHHHHHH-HHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcC--CCceEcHHHHHHHH
Confidence 31 111121111 0011 1111 111110 11 1111 13458999999999
Q ss_pred HHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcE-EEcCEEEEecCCChH-HHHHhcCCC
Q 009027 212 KKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSP-VVKQIRSGR 271 (546)
Q Consensus 212 ~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~-i~ArlVV~ADG~~S~-vr~ql~~~~ 271 (546)
.+.+.++|+++..+++|+++...+|+ ..+.+.+|++ ++||+||.|-|..|- +++..+...
T Consensus 160 ~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 160 AEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 99999999999999999999999994 5666777765 999999999998875 777776654
No 77
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.99 E-value=6.4e-09 Score=115.11 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=88.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCccc----ccCCHH-HHHHHHHcCCCCcccchhhhhhccCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQE----WNISRK-ELLELVESGILVEDDIDEATATKFNPN 182 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~----~~Is~~-~l~~L~~lGl~~~~~ie~~i~~~~~~~ 182 (546)
+||||||||| +|+.+|+.+|+.|.+|+|||++. .++...+ ..+... -++.+..+|-.-...++.... .+.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~gi-q~r-- 80 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGI-QFR-- 80 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccC-cee--
Confidence 6999999965 69999999999999999999874 2221111 012121 133344444210000011000 010
Q ss_pred cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCC
Q 009027 183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNF 260 (546)
Q Consensus 183 ~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~ 260 (546)
......+...+.+ ...+|+..+...+.+.+.+. |++++ .+.|+++..+++.+. |.+.+|..+.|+.||+|+|.+
T Consensus 81 ~ln~skGpAV~s~---RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 81 MLNTSKGPAVRAL---RAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ecccCCCCceeCc---HHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0000001112221 13589999999999998876 56775 567888877777664 777788899999999999976
Q ss_pred h
Q 009027 261 S 261 (546)
Q Consensus 261 S 261 (546)
+
T Consensus 157 L 157 (618)
T PRK05192 157 L 157 (618)
T ss_pred h
Confidence 5
No 78
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.96 E-value=1.9e-08 Score=110.44 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=55.5
Q ss_pred ceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCe-EEEEEc---CCc--EEEcCEEEEecCCC-hHHHHHhcCC
Q 009027 200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA-AVLLLA---EGK--ILSSHLIIDAMGNF-SPVVKQIRSG 270 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dg-v~V~~~---~g~--~i~ArlVV~ADG~~-S~vr~ql~~~ 270 (546)
..||+..+.+.|.+.+++.| ++++++++|+++..++++ +.|.+. +|+ +++|+.||.|.|.+ +.+++.++..
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 46899999999999999887 699999999999886665 666643 353 69999887666655 4588777765
No 79
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.96 E-value=3.1e-08 Score=108.52 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=56.2
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEc---CC--cEEEcCEEEEecCCCh-HHHHHhcCC
Q 009027 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLA---EG--KILSSHLIIDAMGNFS-PVVKQIRSG 270 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~---~g--~~i~ArlVV~ADG~~S-~vr~ql~~~ 270 (546)
..||+..+.+.|.+.+.+.|++++++++|+++..+++ ++.|.+. ++ .+++|+.||-|.|.+| .+++.+|..
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 3589999999999999999999999999999987654 5666542 23 2699999977766655 588888765
No 80
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.92 E-value=2.5e-08 Score=106.81 Aligned_cols=68 Identities=19% Similarity=0.093 Sum_probs=56.1
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC-----cEEEcCEEEEecCCChH-HHHHhc
Q 009027 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIIDAMGNFSP-VVKQIR 268 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-----~~i~ArlVV~ADG~~S~-vr~ql~ 268 (546)
.++..++...|.+.+.+.|++++++++|+++..+++.+++.+.++ .+++|+.||.|.|.+|. +.+.++
T Consensus 193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 367888889999999999999999999999988888877765432 37999999999999985 555554
No 81
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.92 E-value=1.8e-08 Score=107.79 Aligned_cols=69 Identities=10% Similarity=0.001 Sum_probs=53.0
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeE-EEEEcCCcEEEcC-EEEEecCCChHHHHHhcCC
Q 009027 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAEGKILSSH-LIIDAMGNFSPVVKQIRSG 270 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv-~V~~~~g~~i~Ar-lVV~ADG~~S~vr~ql~~~ 270 (546)
.+++..+...|.+.+.+.|++++++++|+++... ++.+ .|.+++| +++|+ +||+|+|..|.+++.++..
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~ 250 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR 250 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC
Confidence 4678888888999999999999999999999754 3443 4666566 68887 5677777777788776654
No 82
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.92 E-value=1.4e-08 Score=115.64 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=55.5
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
.|++..+.+.|.+.+.+ |++++.+++|+++...+++++|.++++..++|+.||.|+|..|.
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 47899999999999988 99999999999999888889888877777899999999999985
No 83
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.88 E-value=9.9e-09 Score=98.63 Aligned_cols=134 Identities=17% Similarity=0.222 Sum_probs=77.7
Q ss_pred EEEcc-hHHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC---cccccC
Q 009027 114 IVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN---RCGFEG 188 (546)
Q Consensus 114 IIVGG-g~G~~~Aa~LA~~G~r-VlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~---~v~f~~ 188 (546)
+|||| ++|+++|+.|.++|++ |+||||+..++.. |.-.+ ....+.+..... ..+... .+.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~--w~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 68 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGV--WRRYY------SYTRLHSPSFFS----SDFGLPDFESFSFDD 68 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTH--HHCH-------TTTT-BSSSCCT----GGSS--CCCHSCHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCe--eEEeC------CCCccccCcccc----ccccCCccccccccc
Confidence 68885 6799999999999999 9999999766532 32100 001111100000 000000 000000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
..... ..........+.+.|.+.+.+.+.+++.+++|+++..+++++.|+++++++++|+.||.|.|..|.
T Consensus 69 ~~~~~---~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 69 SPEWR---WPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp HHHHH---HSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred CCCCC---CCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 00000 011125567788899888888898999999999999999999999988888999999999997653
No 84
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.87 E-value=9e-10 Score=118.91 Aligned_cols=148 Identities=20% Similarity=0.281 Sum_probs=30.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccc--c--cCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQE--W--NISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~--~--~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
|||||||| +|+++|+.+|+.|.||+||||...++.... . .+..........-|++ +++...-........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~-----~e~~~~~~~~~~~~~ 75 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIF-----REFLNRLRARGGYPQ 75 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHH-----HHHHHST--------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHH-----HHHHHHHhhhccccc
Confidence 89999965 688899999999999999999998763211 0 0000000000000110 001100000000000
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc--CC-cEEEcCEEEEecCCChH
Q 009027 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EG-KILSSHLIIDAMGNFSP 262 (546)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~--~g-~~i~ArlVV~ADG~~S~ 262 (546)
. ...-+. -.+.+++..+...|.+.+.++|++|+.++.++++..+++.++ |.+. +| .+|+|+++|||+|. .-
T Consensus 76 ~-~~~~~~---~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g~ 150 (428)
T PF12831_consen 76 E-DRYGWV---SNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD-GD 150 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-cccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 0 000000 013577788888888888889999999999999998775432 3333 23 48999999999995 45
Q ss_pred HHHHhcC
Q 009027 263 VVKQIRS 269 (546)
Q Consensus 263 vr~ql~~ 269 (546)
++..+|.
T Consensus 151 l~~~aG~ 157 (428)
T PF12831_consen 151 LAALAGA 157 (428)
T ss_dssp -------
T ss_pred ccccccc
Confidence 6655554
No 85
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.86 E-value=1e-07 Score=104.43 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=58.9
Q ss_pred eeCHHHHHHHHHHHHHh----cC--CEEEeCceEEEEEEe-CCeEEEEEcCCcEEEcCEEEEecCCChH-HHHHhcCCC
Q 009027 201 GVSPAKLIEIVKKRFIS----LG--GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSGR 271 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~----~G--~~v~~~t~v~~i~~~-~dgv~V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~~~~ 271 (546)
.||+..+.+.|.+.+.+ .| ++++++++|+++..+ ++.+.|++.+| +++|+.||-|.|.+|. +++.++.+.
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~ 284 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGL 284 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCC
Confidence 58999999999999988 77 689999999999887 44677887666 6999999999999885 788787653
No 86
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.84 E-value=6.6e-08 Score=107.62 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=55.6
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEcCEEEEecCCChH-HHHHhc
Q 009027 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIR 268 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---~g--~~i~ArlVV~ADG~~S~-vr~ql~ 268 (546)
..||+.+|...+...|.++|++++.+++|+++..+++.+. |.+. ++ .+|+|+.||-|.|.+|. +.+.++
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC
Confidence 3589999999999999999999999999999988776543 4432 23 37999999999999986 555554
No 87
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.81 E-value=5e-08 Score=106.32 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=52.0
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
..+++.++...|.+.+.+.|++|+++++|+++.. ++.+.|++.+| +++|+.||.|.|..|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 4589999999999999999999999999999875 45567777666 6999999999998864
No 88
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.81 E-value=4.5e-08 Score=103.26 Aligned_cols=136 Identities=21% Similarity=0.246 Sum_probs=82.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEE-cCCCCCCCccc----ccCCHHH-HHHHHHcCCCCcccchhhhhhccCCCcc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIV-ERNTLKGREQE----WNISRKE-LLELVESGILVEDDIDEATATKFNPNRC 184 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLl-Er~~~~~~~r~----~~Is~~~-l~~L~~lGl~~~~~ie~~i~~~~~~~~v 184 (546)
|||||||| +|+.+|+++|+.|.+|+|+ ++........+ ..+.... .+.++.+|=+ +-.+. +. ..+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~----m~~~a--D~--~~i 72 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL----MGRAA--DE--TGI 72 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S----HHHHH--HH--HEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH----HHHHH--hH--hhh
Confidence 89999976 6999999999999999999 33322221111 1233332 2345555521 11110 10 112
Q ss_pred cccC----C-ccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEec
Q 009027 185 GFEG----K-GEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAM 257 (546)
Q Consensus 185 ~f~~----~-~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~AD 257 (546)
+|.- + ...+ .+...+|+..+.+.+.+.+.+.++ +|+ ..+|+++..+++.+. |.+.+|..+.|+.||.|+
T Consensus 73 ~~~~lN~skGpav~---a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaT 148 (392)
T PF01134_consen 73 HFRMLNRSKGPAVH---ALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLAT 148 (392)
T ss_dssp EEEEESTTS-GGCT---EEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-T
T ss_pred hhhcccccCCCCcc---chHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEec
Confidence 2211 1 1111 123479999999999999988665 665 578999988887764 777789999999999999
Q ss_pred CC
Q 009027 258 GN 259 (546)
Q Consensus 258 G~ 259 (546)
|.
T Consensus 149 Gt 150 (392)
T PF01134_consen 149 GT 150 (392)
T ss_dssp TT
T ss_pred cc
Confidence 99
No 89
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.78 E-value=1.4e-06 Score=94.89 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=57.3
Q ss_pred cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---Cc--EEEcCEEEEecCCChH-HHHHhc
Q 009027 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSP-VVKQIR 268 (546)
Q Consensus 199 ~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g~--~i~ArlVV~ADG~~S~-vr~ql~ 268 (546)
.+.+|..+|.-.+...|.++|++++..++|+++..+++-+-|++.| |+ +++|+.||-|.|.++- +++..+
T Consensus 158 D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~ 233 (532)
T COG0578 158 DGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAG 233 (532)
T ss_pred cceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhc
Confidence 3568889999999999999999999999999999988844466544 33 7999999999999997 455443
No 90
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.77 E-value=1.1e-07 Score=96.77 Aligned_cols=111 Identities=23% Similarity=0.366 Sum_probs=80.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~ 189 (546)
|||+||||| +|+++|..|++.|++|+|+|+....+. +... . .+ ..+ + +
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~----------~-----~~-----~~~-~------~- 49 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQ---LTTT----------T-----EV-----ENY-P------G- 49 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcc---eeec----------c-----cc-----ccc-C------C-
Confidence 799999965 699999999999999999998863221 1000 0 00 000 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
+...+....+...+.+.+.+.|++++. ++|++++.+++.+.|+++++.++++|.||.|+|...
T Consensus 50 --------~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 50 --------FPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred --------CCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 001123345667777788888999988 899999888888888887778999999999999864
No 91
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.76 E-value=4.6e-07 Score=99.24 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=56.3
Q ss_pred ceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEe-CCeEEEEE---cCCc--EEEcCEEEEecCCChH-HHHHhcCC
Q 009027 200 LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTY-ENAAVLLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIRSG 270 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~-~dgv~V~~---~~g~--~i~ArlVV~ADG~~S~-vr~ql~~~ 270 (546)
..||...+.+.|.+.+.+ .|++++++++|+++... +++|+|.+ .++. +++|++||-|.|.+|. +++.+|..
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 458999999999999864 48999999999999877 66777763 3342 6999999888888775 77777754
No 92
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.75 E-value=2.1e-07 Score=105.14 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=54.2
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC--CeE-EEEE---cCCc--EEEcCEEEEecCCChH-HHHHhc
Q 009027 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAA-VLLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIR 268 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dgv-~V~~---~~g~--~i~ArlVV~ADG~~S~-vr~ql~ 268 (546)
.+|+.++...|.+.+.+.|++++..++|+++..++ +.+ .|.+ .+++ +++|+.||.|.|.+|. +++.++
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 47999999999999999999999999999998763 433 2333 1333 6899999999999987 666664
No 93
>PLN02661 Putative thiazole synthesis
Probab=98.71 E-value=2.8e-07 Score=95.98 Aligned_cols=130 Identities=17% Similarity=0.306 Sum_probs=82.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCCcccchhhhhhc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATK 178 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~~~~~~~r~~~---------Is~~~l~~L~~lGl~~~~~ie~~i~~~ 178 (546)
++||+||||| +|+++|+.|++. |++|+||||...++.. .|. +.....+.|+++|+-
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG-~~~gg~l~~~~vv~~~a~e~LeElGV~------------ 158 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAHLFLDELGVP------------ 158 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc-eeeCcccccccccccHHHHHHHHcCCC------------
Confidence 6899999965 699999999976 9999999998766421 110 111122334444431
Q ss_pred cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeE---EEE----EcC--C---
Q 009027 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA---VLL----LAE--G--- 245 (546)
Q Consensus 179 ~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv---~V~----~~~--g--- 245 (546)
|+.. +.+....+...+...|.+++.+ .|++++.++.++++..+++.+ ++. ..+ +
T Consensus 159 -------fd~~------dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~ 225 (357)
T PLN02661 159 -------YDEQ------ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSC 225 (357)
T ss_pred -------cccC------CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCc
Confidence 1100 0000111334455677776654 688999999999998776642 221 111 1
Q ss_pred ---cEEEcCEEEEecCCChHHHH
Q 009027 246 ---KILSSHLIIDAMGNFSPVVK 265 (546)
Q Consensus 246 ---~~i~ArlVV~ADG~~S~vr~ 265 (546)
..|+|+.||.|+|+..++..
T Consensus 226 ~dp~~I~AkaVVlATGh~g~~ga 248 (357)
T PLN02661 226 MDPNVMEAKVVVSSCGHDGPFGA 248 (357)
T ss_pred cceeEEECCEEEEcCCCCCcchh
Confidence 26899999999998877554
No 94
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.69 E-value=2.3e-07 Score=94.18 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=94.5
Q ss_pred CcccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCCCc----ccccCCHHHH-------HHHHHcCCCCc--------
Q 009027 109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE----QEWNISRKEL-------LELVESGILVE-------- 168 (546)
Q Consensus 109 ~~yDVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~~~----r~~~Is~~~l-------~~L~~lGl~~~-------- 168 (546)
..+||||||+|+ |+++|+.||++|.++++||+.++|-.. ..--|-+.+- -.++.+..|-.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 368999999875 999999999999999999999887421 0111111110 00111111100
Q ss_pred ---------------ccchhhhh------------------hccCCCcccccCCccccccccccceeCHHHHHHHHHHHH
Q 009027 169 ---------------DDIDEATA------------------TKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRF 215 (546)
Q Consensus 169 ---------------~~ie~~i~------------------~~~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a 215 (546)
.+++++.. ..| |..+.+..+. ...-+..+-.+.+.+-..+|..++
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~f-P~~~~l~d~~-~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRF-PSNIPLPDGW-QGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhC-CCCccCCcch-hhcccccccEeeHHHHHHHHHHHH
Confidence 01111100 011 1122222211 111122344577888899999999
Q ss_pred HhcCCEEEeCceEEEEEE---eCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027 216 ISLGGVIFEGYSVSSICT---YENAAVLLLAEGKILSSHLIIDAMGNF 260 (546)
Q Consensus 216 ~~~G~~v~~~t~v~~i~~---~~dgv~V~~~~g~~i~ArlVV~ADG~~ 260 (546)
+++|+.++.+..+..+.. ++.++.|.+++|..+.|+=+|-+.|++
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 999999999999987763 445788888899899999999999976
No 95
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.68 E-value=1.7e-07 Score=100.36 Aligned_cols=154 Identities=21% Similarity=0.254 Sum_probs=90.7
Q ss_pred EEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc------ccccCCHH-HHH-HHHHcCCCCcccchhhhhhccCCC-c
Q 009027 114 IVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRK-ELL-ELVESGILVEDDIDEATATKFNPN-R 183 (546)
Q Consensus 114 IIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~------r~~~Is~~-~l~-~L~~lGl~~~~~ie~~i~~~~~~~-~ 183 (546)
||||| ++|+++|+.++++|++|+|+||++.++.+ ...|++.. ... .....+- ....+.... ..|... .
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPR-NGKFLRSAL-SRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCC-CcHHHHHHH-HhCCHHHH
Confidence 57785 57999999999999999999998866532 01122211 011 1111110 000011100 111100 0
Q ss_pred ccccC--Ccccccc---ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027 184 CGFEG--KGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (546)
Q Consensus 184 v~f~~--~~~l~~~---~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG 258 (546)
+.|.. +.++... ..+...-....+.+.|.+.+.+.|++++.+++|+++..+++.+.|.+ ++.++.|+.||.|+|
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCC
Confidence 01100 0001100 11111123467888889999999999999999999988777777777 566899999999999
Q ss_pred CCh-----------HHHHHhcCC
Q 009027 259 NFS-----------PVVKQIRSG 270 (546)
Q Consensus 259 ~~S-----------~vr~ql~~~ 270 (546)
..| .+++++|..
T Consensus 158 ~~s~p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 158 GLSYPQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred CcccCCCCCCcHHHHHHHHCCCC
Confidence 987 577777654
No 96
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.68 E-value=6.7e-07 Score=95.81 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=54.9
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChH-HHHHhc
Q 009027 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIR 268 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~ 268 (546)
.+++..+.+.|.+.+.+.|++++++++|+++..+++++. |.+. +.+++|+.||.|.|..|. +.+.++
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g 265 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG 265 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence 468889999999999999999999999999988777764 5554 447999999999999985 444444
No 97
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.65 E-value=3.4e-07 Score=101.38 Aligned_cols=113 Identities=25% Similarity=0.281 Sum_probs=83.4
Q ss_pred CCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 108 ~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
..+|||+|||| ++|+++|..|++.|++|+|+|+. ..+. +.- ..+ ++ .+ .
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-~GG~---~~~---------~~~------~~-----~~----~-- 258 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-FGGQ---VLD---------TMG------IE-----NF----I-- 258 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCe---eec---------cCc------cc-----cc----C--
Confidence 44799999996 56999999999999999999864 2111 100 000 00 00 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
..+ ..+...+.+.|.+.+.+.|++++.+++++++...++.+.|.+.++.+++++.||.|+|..+
T Consensus 259 ------~~~-----~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 259 ------SVP-----ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred ------CCC-----CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 000 1234567788888998999999999999999888788888888888999999999999975
No 98
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.65 E-value=3.4e-07 Score=96.40 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=47.7
Q ss_pred ceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027 200 LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
..+++..+...|.+++.+. |++++++++|+++.. + .|.+++| +++|+.||-|.|..|.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~--~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G--TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C--eEEeCCC-cEEeCEEEECCCCChh
Confidence 3589999999999988775 999999999999853 2 5666556 4799999999999875
No 99
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.65 E-value=6.5e-07 Score=99.63 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC----eEEEE-----EcCC-cEEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLL-----LAEG-KILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~-----~~~g-~~i~ArlVV~ADG~~S~v 263 (546)
..+.+.|.+++.+.|++++.++.++++..+++ ++.+. ..++ ..++|+.||.|+|..|.+
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC
Confidence 46778899999889999999999999987654 34443 1233 379999999999998843
No 100
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.65 E-value=6.8e-07 Score=98.66 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe---EEEEEcCC--cEEEcCEEEEecCCChH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLLAEG--KILSSHLIIDAMGNFSP 262 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~~~g--~~i~ArlVV~ADG~~S~ 262 (546)
..+.+.|.+.+.+.|++++.+++++++..+++. +.+...++ .+++|+-||.|+|..+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 457778888888999999999999999876554 33443443 37999999999997664
No 101
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.63 E-value=1.4e-06 Score=95.14 Aligned_cols=62 Identities=16% Similarity=0.315 Sum_probs=53.7
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChH
Q 009027 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
-.+||.-+.++|...|.+.|+.|.+++.|+++....|. +-|++..|. |+|..+|.|.|.+..
T Consensus 182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAR 244 (856)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHH
Confidence 45899999999999999999999999999999876554 467776674 999999999998865
No 102
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.61 E-value=7.6e-07 Score=99.64 Aligned_cols=59 Identities=15% Similarity=0.362 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EE---EcCCc--EEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL---LAEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~---~~~g~--~i~ArlVV~ADG~~S~v 263 (546)
..+...|.+++.+.|++++.++.++++..+++.+. |. ..+|+ .++|+.||.|+|..|.+
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCC
Confidence 35777888888888999999999999987766543 22 23454 69999999999998854
No 103
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.58 E-value=1.2e-06 Score=98.70 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=84.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcc----cccC--------CHHH-HHHHHHc--CCCCcccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQ----EWNI--------SRKE-LLELVES--GILVEDDI 171 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r----~~~I--------s~~~-l~~L~~l--Gl~~~~~i 171 (546)
++|||||||| +|+++|+.+++. |.+|+||||....+... .+.+ ++.. .+.+... ++.++.-+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 6899999965 799999999998 99999999987643221 1111 1111 1111111 11111000
Q ss_pred hhhhh------hccCCCcccccCC--ccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEE---
Q 009027 172 DEATA------TKFNPNRCGFEGK--GEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV--- 239 (546)
Q Consensus 172 e~~i~------~~~~~~~v~f~~~--~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~--- 239 (546)
+.... .......+.|... ..+.........++...+.+.|.+++.+.| ++++.++.++++..+++.+.
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~ 170 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAV 170 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence 00000 0000001122100 000000000011345678888888888876 89999999999987666432
Q ss_pred E-EEcCCc--EEEcCEEEEecCCChH
Q 009027 240 L-LLAEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 240 V-~~~~g~--~i~ArlVV~ADG~~S~ 262 (546)
+ ...+++ .++|+.||.|+|..+.
T Consensus 171 ~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEccCCcEEEEECCEEEECCCchhh
Confidence 2 233453 7999999999998764
No 104
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.58 E-value=8.4e-07 Score=97.51 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE-EEEcC-C--cEEEcCEEEEecCCChHH
Q 009027 204 PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE-G--KILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 204 ~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~~-g--~~i~ArlVV~ADG~~S~v 263 (546)
...+...|.+++.+ .|+++++++.++++..+++.+. |.+.+ + ..++|+.||.|+|..|.+
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 45688889999887 6899999999999987665544 33332 3 379999999999999874
No 105
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.56 E-value=1.1e-06 Score=98.51 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~----V~~~~g~--~i~ArlVV~ADG~~S~v 263 (546)
..+...|.+++.+. +++++.++.++++..+++.+. +...+|+ .++|+.||.|+|..|.+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 35777888887775 789999999999988766543 2334553 79999999999999865
No 106
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=8.6e-07 Score=91.32 Aligned_cols=112 Identities=25% Similarity=0.318 Sum_probs=77.9
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~r-VlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
.|||||||| |+|+++|..++|+|++ ++|+|+....+.. ..+. + ...| ..|.
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~----------------~~~~--~-----veny----pg~~ 55 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL----------------TKTT--D-----VENY----PGFP 55 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcc----------------ccce--e-----ecCC----CCCc
Confidence 699999995 6799999999999999 6677665443211 0000 0 0111 0111
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
-.+.-..|.+...+++...|+++.. ..+..++..++.++|.++++. ++||.||.|+|....
T Consensus 56 ------------~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 56 ------------GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred ------------cCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 1133456778888888888988877 777777766667888887776 999999999998764
No 107
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.55 E-value=9.5e-07 Score=97.77 Aligned_cols=113 Identities=25% Similarity=0.331 Sum_probs=81.1
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
...|||+||||| +|+++|..|++.|++|+|+|+. ..+... ...+ ++ . +
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-~GG~~~------------~~~~------~~-----~-------~ 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-IGGQVK------------DTVG------IE-----N-------L 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCccc------------cCcC------cc-----c-------c
Confidence 446999999964 6999999999999999999742 211100 0000 00 0 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
.+ .+ ......+.+.+.+.+.+.|++++.+++|+++..+++.+.|++++|.+++++.||.|+|...
T Consensus 259 ~~-----~~-----~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 259 IS-----VP-----YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred cc-----cC-----CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 00 00 0123456777888888889999999999999887777888887888999999999999874
No 108
>PRK07121 hypothetical protein; Validated
Probab=98.55 E-value=2.4e-06 Score=93.95 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEE-EEEc-CCc--EEEc-CEEEEecCCChH
Q 009027 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LLLA-EGK--ILSS-HLIIDAMGNFSP 262 (546)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~-V~~~-~g~--~i~A-rlVV~ADG~~S~ 262 (546)
...+.+.|.+++++.|++++.+++++++..+++ .++ |.+. +++ +++| +.||.|+|..+.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 456888899999999999999999999987654 222 3322 333 6899 999999998774
No 109
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.55 E-value=2.1e-06 Score=93.75 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE--cCC--cEEEcCEEEEecCCChH
Q 009027 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEG--KILSSHLIIDAMGNFSP 262 (546)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~~g--~~i~ArlVV~ADG~~S~ 262 (546)
...+...|.+++++.|++++.+++++++..+++.++ |.+ .++ ..++|+-||.|+|..+.
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 346778888899999999999999999987666543 333 233 37899999999997553
No 110
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.52 E-value=1.8e-06 Score=92.62 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE---cCCc--EEEcCEEEEecCCChH-HHHHh
Q 009027 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEGK--ILSSHLIIDAMGNFSP-VVKQI 267 (546)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~---~~g~--~i~ArlVV~ADG~~S~-vr~ql 267 (546)
-..+...|.+.++++|++++.+++++++..+++.|+ |.+ .+|+ +|+|+-||.|+|..+. +.++.
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~ 210 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQY 210 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccccccccc
Confidence 456888999999999999999999999999887553 333 2454 7899999999999994 44443
No 111
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.50 E-value=1.9e-06 Score=93.25 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC----eEEEEEcCCc--EEEcCEEEEecCCChH
Q 009027 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~~~~g~--~i~ArlVV~ADG~~S~ 262 (546)
+...+.+.|.+++.+.|++++.+++++++..+++ ++++...+++ .+.++-||.|+|..|.
T Consensus 128 ~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 128 SGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 3456888899999999999999999999988654 3334433443 5789999999998876
No 112
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=1.9e-06 Score=96.57 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~----V~~~~g~--~i~ArlVV~ADG~~S~v 263 (546)
..+...|.+++.+.|+++++++.++++..+++.+. +...+++ .++|+.||.|+|..+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 45778888888888999999999999987665432 2333554 69999999999998753
No 113
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.49 E-value=1.8e-06 Score=93.41 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE-E-EEcCCc--EEEcCEEEEecCCChH
Q 009027 204 PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-L-LLAEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 204 ~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V-~~~~g~--~i~ArlVV~ADG~~S~ 262 (546)
...+.+.|.+++.+ .|++++++++++++..+++.+. | ...++. +++|+-||.|+|..+.
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 34567778888765 5899999999999987665432 1 122443 6999999999998653
No 114
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.48 E-value=2.5e-06 Score=95.70 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~----V~~~~g~--~i~ArlVV~ADG~~S~v 263 (546)
..+...|.+++.+. ++++++++.++++..+++.+. +...+|+ .++|+.||.|+|..|.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 45778888888764 789999999999988766543 2333553 79999999999998864
No 115
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.48 E-value=1.7e-06 Score=95.99 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=85.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CCccc----ccCCHHH-HHHHHHcCCCCcccchhhhhh---ccC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQE----WNISRKE-LLELVESGILVEDDIDEATAT---KFN 180 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~-~~~r~----~~Is~~~-l~~L~~lGl~~~~~ie~~i~~---~~~ 180 (546)
||||||||| +|+.+|..+|+.|.+|+|+|++... +...+ ..+..+. .+.+..+|=. +..+... .|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~----~~~~~d~~~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGL----MGKAADKAGLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccch----HHHHHHhhceehe
Confidence 799999965 6999999999999999999987432 21111 1111121 2233333310 0111100 010
Q ss_pred CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEe-CCe-EEEEEcCCcEEEcCEEEEec
Q 009027 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTY-ENA-AVLLLAEGKILSSHLIIDAM 257 (546)
Q Consensus 181 ~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~-~dg-v~V~~~~g~~i~ArlVV~AD 257 (546)
.... .. +..++.+ ...+|+..+...+.+.+.+.+ ++++.+ .++++..+ ++. +.|.+.+|..++|+.||.|+
T Consensus 77 ~ln~-sk-gpAV~~~---RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILAT 150 (617)
T TIGR00136 77 VLNS-SK-GPAVRAT---RAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITT 150 (617)
T ss_pred eccc-CC-CCccccc---HHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEcc
Confidence 0000 00 1112221 246899999999999998884 576654 67777655 333 45777788899999999999
Q ss_pred CCCh
Q 009027 258 GNFS 261 (546)
Q Consensus 258 G~~S 261 (546)
|.++
T Consensus 151 GtfL 154 (617)
T TIGR00136 151 GTFL 154 (617)
T ss_pred Cccc
Confidence 9994
No 116
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.47 E-value=2.6e-06 Score=96.13 Aligned_cols=58 Identities=10% Similarity=0.207 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeEE---E-EEcCCc--EEEcCEEEEecCCChH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAV---L-LLAEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~---V-~~~~g~--~i~ArlVV~ADG~~S~ 262 (546)
..+...|.+++.+.|++++.++.++++..+ ++.+. + ...+|+ .++|+-||.|+|..+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 467888999998899999999999998873 44332 2 223454 7899999999997753
No 117
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.47 E-value=2.3e-06 Score=93.37 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=88.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhcc-----C-C-
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF-----N-P- 181 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~-----~-~- 181 (546)
..+|+||||| +|+++|..|.+.|++|+|+||....+ ..|+.++..-. ..+++-+.... .....| + +
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG--G~W~~~~~~~~--d~~~~~~~~~~--~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG--GLWVYTPKSES--DPLSLDPTRSI--VHSSVYESLRTNLPR 83 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc--ceeecCCCcCC--CccccCCCCcc--cchhhhhhhhccCCH
Confidence 5799999965 69999999999999999999987655 33554322100 01121110000 000011 0 0
Q ss_pred CcccccC---Ccccc-ccccccceeCHHHHHHHHHHHHHhcCCE--EEeCceEEEEEEeCCeEEEEEcCC--c--EEEcC
Q 009027 182 NRCGFEG---KGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYENAAVLLLAEG--K--ILSSH 251 (546)
Q Consensus 182 ~~v~f~~---~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~--v~~~t~v~~i~~~~dgv~V~~~~g--~--~i~Ar 251 (546)
....|.+ ..... .......-.....+.+.|.+.+...|.. |+.+++|+++...++.|.|++.++ . +..+|
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d 163 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD 163 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence 0011111 00000 0000001134567889999999888886 899999999998888899988642 2 46789
Q ss_pred EEEEecCCCh
Q 009027 252 LIIDAMGNFS 261 (546)
Q Consensus 252 lVV~ADG~~S 261 (546)
.||.|.|+.|
T Consensus 164 ~VIvAtG~~~ 173 (461)
T PLN02172 164 AVVVCNGHYT 173 (461)
T ss_pred EEEEeccCCC
Confidence 9999999865
No 118
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=2.2e-06 Score=96.13 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE---E-EEcCCc--EEEcCEEEEecCCChHH
Q 009027 206 KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 206 ~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~---V-~~~~g~--~i~ArlVV~ADG~~S~v 263 (546)
.+...|.+++.+ .|++++.++.++++..+++.+. + ...+++ .++|+.||.|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence 466778887766 5899999999999987665432 2 223554 68999999999998654
No 119
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=3.7e-06 Score=94.71 Aligned_cols=58 Identities=14% Similarity=0.299 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-E---EE-EEcCCc--EEEcCEEEEecCCChH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VL-LLAEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V-~~~~g~--~i~ArlVV~ADG~~S~ 262 (546)
..+...|.+++.+.|+++++++.++++..++++ | .+ ...+|+ .+.|+-||-|+|..+.
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 357788888888889999999999999876533 3 22 123454 7999999999998764
No 120
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.38 E-value=6.6e-06 Score=86.98 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=53.7
Q ss_pred ceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH-HHHhc
Q 009027 200 LGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV-VKQIR 268 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v-r~ql~ 268 (546)
..+++..+...|.+.+.+.|+ .+..++.+..+....+.+.|.+.+|+ ++|+.||-|.|..|.. ...++
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence 358899999999999999996 66668888888764256777776776 9999999999999874 33444
No 121
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.38 E-value=4.2e-06 Score=93.49 Aligned_cols=110 Identities=17% Similarity=0.301 Sum_probs=76.0
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
.|||+|||| ++|+++|..|+++|++|+|+|+....+.. ..+ . .+ ..+ .+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~---~~~-------------~--~i-----~~~-------pg 53 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQI---TIT-------------S--EV-----VNY-------PG 53 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceE---Eec-------------c--cc-----ccC-------CC
Confidence 699999996 56889999999999999999987543311 000 0 00 000 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
. ..+....+.+.+.+.+.+.|++++ .++|+++..+++.+.|.+.++ .+.++.||-|+|..+
T Consensus 54 ~----------~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p 114 (555)
T TIGR03143 54 I----------LNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASP 114 (555)
T ss_pred C----------cCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCcc
Confidence 0 012334566777778888899875 678888887666677777555 689999999999875
No 122
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.37 E-value=6.4e-06 Score=93.23 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeC-CeEE-EEE---cCCc--EEEcCEEEEecCCChH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV-LLL---AEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~-V~~---~~g~--~i~ArlVV~ADG~~S~ 262 (546)
..+...|.+++.+.|++++.++.++++..++ +.+. |.+ .+|+ .+.|+-||.|+|..+.
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 4577888888888899999999999987763 3332 222 2453 7899999999998864
No 123
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=1e-05 Score=90.51 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE---cCCc--EEEcCEEEEecCCChH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~---~~g~--~i~ArlVV~ADG~~S~ 262 (546)
..+...|.+++.+.|+++++++.++++..+++.|+ |.. .+++ .++|+-||-|+|..+.
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 199 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGM 199 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCcccc
Confidence 35677888888888999999999999988765443 222 1333 6899999999998774
No 124
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.36 E-value=6.5e-06 Score=90.01 Aligned_cols=152 Identities=22% Similarity=0.282 Sum_probs=83.3
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc--ccccCC--------HH--HHHHHHHc-CCCCcccchhhhh
Q 009027 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE--QEWNIS--------RK--ELLELVES-GILVEDDIDEATA 176 (546)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~--r~~~Is--------~~--~l~~L~~l-Gl~~~~~ie~~i~ 176 (546)
+||||||| ++|+++|+.++++|.+|+||||....+.. ...+|. +. ..+.+..- ++.++.-++....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 79999996 57999999999999999999998543211 011111 11 00111111 1211110111000
Q ss_pred -----hcc-CCCcccccCCcc---ccccccccc-eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCC
Q 009027 177 -----TKF-NPNRCGFEGKGE---IWVEDILNL-GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG 245 (546)
Q Consensus 177 -----~~~-~~~~v~f~~~~~---l~~~~~l~~-~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g 245 (546)
.++ ....+.|..... -..+..+.. ......+.+.|.+++.+.|++++.. .++.+..+++.+. |.+ ++
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g 159 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DG 159 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CC
Confidence 000 000112211000 000000000 0123468888999998899999876 7888876655554 334 56
Q ss_pred cEEEcCEEEEecCCChHHH
Q 009027 246 KILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 246 ~~i~ArlVV~ADG~~S~vr 264 (546)
..++|+-||.|+|..|.+.
T Consensus 160 ~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 160 ELLKFDATVIATGGFSGLF 178 (466)
T ss_pred EEEEeCeEEECCCcCcCCC
Confidence 6899999999999998754
No 125
>PRK08275 putative oxidoreductase; Provisional
Probab=98.36 E-value=6.9e-06 Score=91.72 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeE---EE-EEcCCc--EEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv---~V-~~~~g~--~i~ArlVV~ADG~~S~v 263 (546)
..+.+.|.+++.+.|++++.++.++++..+ ++.+ .+ ...+|+ .++|+.||.|+|..+.+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 357788999998899999999999999876 3322 22 123454 68999999999998754
No 126
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.36 E-value=1.8e-06 Score=92.17 Aligned_cols=113 Identities=20% Similarity=0.089 Sum_probs=75.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC---------cccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR---------EQEWNISRKELLELVESGILVEDDIDEATATKFN 180 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~---------~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~ 180 (546)
-||+||||| +|+.+|+.||++|++|+|+|+.+.+.. .+..+.|..+...+...|+|.. +++..-.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~-em~~lgs---- 77 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKE-EMRRLGS---- 77 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHH-HHHHhcc----
Confidence 589999976 699999999999999999998765532 1233566677777888898852 2221100
Q ss_pred CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEE
Q 009027 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSIC 232 (546)
Q Consensus 181 ~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~ 232 (546)
+.+........|..-.+.+|+..|.+.|.+++.+. +++++ ..+|+++.
T Consensus 78 ---l~~~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 78 ---LIMEAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred ---hheecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 11221111111221124689999999999999876 46777 56888774
No 127
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.35 E-value=6.2e-06 Score=91.90 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EE---EEE-cCCc--EEEcCEEEEecCCChH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV---LLL-AEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~---V~~-~~g~--~i~ArlVV~ADG~~S~ 262 (546)
..+...|.+++.+.|++++.++.++++..++++ ++ +.. .+++ .++|+-||.|+|..+.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 456778888888889999999999999877664 32 222 3454 6999999999998764
No 128
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.35 E-value=8e-06 Score=92.63 Aligned_cols=55 Identities=7% Similarity=0.184 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEcCEEEEecCCChH
Q 009027 208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---~g~--~i~ArlVV~ADG~~S~ 262 (546)
.+.|.+++.+.|++++.++.++++..+++.++ |.+. +|+ .+.|+-||.|+|..+.
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 35666677788999999999999987665433 3222 453 6899999999998765
No 129
>PRK07233 hypothetical protein; Provisional
Probab=98.33 E-value=0.00057 Score=73.32 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~ 260 (546)
.+-+.|.+.+.+.|++|+.+++|+++..+++.+++...++++++|+.||-|....
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 3567777788888999999999999998888776555567789999999998864
No 130
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.31 E-value=1.2e-05 Score=90.33 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeC----CeE---EE-EEcCCc--EEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~----dgv---~V-~~~~g~--~i~ArlVV~ADG~~S~v 263 (546)
..+...|.+++.+.|+++++++.++++..++ +.+ .+ ...+++ .++|+-||.|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 4677889999988999999999999998665 322 22 223454 68999999999998743
No 131
>PLN02815 L-aspartate oxidase
Probab=98.30 E-value=9e-06 Score=91.31 Aligned_cols=158 Identities=15% Similarity=0.201 Sum_probs=83.6
Q ss_pred CCCCCCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccc---cC--------CHHH-HHHHHHcC--CCCc
Q 009027 104 SDKAVGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI--------SRKE-LLELVESG--ILVE 168 (546)
Q Consensus 104 ~~~~~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~---~I--------s~~~-l~~L~~lG--l~~~ 168 (546)
.++...++||||||| ++|+++|+.+++.| +|+||||....+....| +| |+.. ++.....| +.++
T Consensus 23 ~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~ 101 (594)
T PLN02815 23 DDESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDE 101 (594)
T ss_pred ccCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcH
Confidence 344555799999996 57999999999999 99999998875432111 11 1111 11111111 2111
Q ss_pred ccchhhhhh-----cc-CCCcccccCCc--ccc-------c-cccc-cceeCHHHHHHHHHHHHHhc-CCEEEeCceEEE
Q 009027 169 DDIDEATAT-----KF-NPNRCGFEGKG--EIW-------V-EDIL-NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSS 230 (546)
Q Consensus 169 ~~ie~~i~~-----~~-~~~~v~f~~~~--~l~-------~-~~~l-~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~ 230 (546)
.-++..+.. ++ ....+.|.... .+. . +..+ .....-..+...|.+++.+. |+++++++.+++
T Consensus 102 ~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~ 181 (594)
T PLN02815 102 ETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID 181 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhe
Confidence 101110000 00 00011221100 000 0 0000 00012345777888888765 889999999999
Q ss_pred EEEeCCe----EE-EE---EcCCc--EEEcCEEEEecCCChH
Q 009027 231 ICTYENA----AV-LL---LAEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 231 i~~~~dg----v~-V~---~~~g~--~i~ArlVV~ADG~~S~ 262 (546)
+..++++ ++ |. ..+|+ .+.|+-||-|+|..+.
T Consensus 182 Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred eeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 9875432 21 22 22454 6899999999998764
No 132
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.29 E-value=2.8e-05 Score=87.33 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE---EEEcCCc-EEEc-CEEEEecCCChH
Q 009027 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSS-HLIIDAMGNFSP 262 (546)
Q Consensus 203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V~~~~g~-~i~A-rlVV~ADG~~S~ 262 (546)
+...|...|.+++++.|++++.+++|+++..+++.++ +...++. +++| +.||-|.|..+.
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 3445667888899999999999999999887655432 3333343 6899 888889988875
No 133
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.29 E-value=1.1e-05 Score=87.36 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEcCEEEEecCCCh
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
|-+.+.+.++..|++++.+++|++|..++++ +.|++++|++++|+.||.......
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccc
Confidence 4556666777789999999999999877654 457777899999999998655543
No 134
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.28 E-value=1.7e-05 Score=89.27 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-E---EEE-EcCCc--EEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VLL-LAEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V~-~~~g~--~i~ArlVV~ADG~~S~v 263 (546)
..|...|.+++.+.|++++.++.++++..++++ + .+. ..+++ .+.|+-||.|+|..+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 357788888888899999999999999876433 2 221 22453 68999999999988754
No 135
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.27 E-value=6.8e-06 Score=89.31 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=72.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
+|||+||||| +|.++|..++++|++|+|+|+....+.+..++ +..+.+-.- ..+.. .++.. ..+. +...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~--a~~~~--~~~~~--~~~g---~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYG--STFGG--EFEDA--AGYG---WTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHH--HHHHH--HHhhh--HhcC---cCCC
Confidence 6999999965 68889999999999999999976555332111 222221100 00000 00000 0000 0000
Q ss_pred CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 188 ~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
...+..+..... .+ -..+.+.+.+.+.+.|++++.+ ++..+ +.+.+.|. .+|++++++.||-|+|...
T Consensus 73 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v--~~~~v~v~-~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 73 -KARFDWKKLLQK-KDDEIARLSGLYKRLLANAGVELLEG-RARLV--GPNTVEVL-QDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred -CCCcCHHHHHHH-HHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEEEEe-cCCeEEEcCEEEEecCCcC
Confidence 000000000000 00 1123445556667789998876 45444 33445554 3567899999999999763
No 136
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.26 E-value=1.6e-05 Score=87.99 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE--cCCc--EEEcCEEEEecCCChH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~~g~--~i~ArlVV~ADG~~S~ 262 (546)
..+.+.|.+++. .|+++++++.++++..+++.+. |.+ .+++ .++|+.||.|+|..+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 456777777775 6899999999999976655433 322 2333 7899999999999774
No 137
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.25 E-value=1.9e-05 Score=89.39 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=32.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
++|||||||| +|+++|+.+++.|.+|+||||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 6999999965 69999999999999999999987654
No 138
>PRK09897 hypothetical protein; Provisional
Probab=98.25 E-value=1.2e-05 Score=88.99 Aligned_cols=150 Identities=12% Similarity=0.079 Sum_probs=80.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccc-hhhhhhccCCCccc-
Q 009027 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDI-DEATATKFNPNRCG- 185 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~i-e~~i~~~~~~~~v~- 185 (546)
.+|+||||| .|+++|..|++. .++|.|+|++..++....|.....+-..+....-.+.... .....+- ......
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl-~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWL-QKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHh-hhhhHHH
Confidence 579999965 599999999865 4699999998766644444331111111111100000000 0000000 000000
Q ss_pred cc--CC--ccccccccccceeCHHHH---HHHHHHHHHhcC--CEEEeCceEEEEEEeCCeEEEEEcC-CcEEEcCEEEE
Q 009027 186 FE--GK--GEIWVEDILNLGVSPAKL---IEIVKKRFISLG--GVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIID 255 (546)
Q Consensus 186 f~--~~--~~l~~~~~l~~~V~~~~L---~~~L~~~a~~~G--~~v~~~t~v~~i~~~~dgv~V~~~~-g~~i~ArlVV~ 255 (546)
+. +. ..+.....+...+-...| .+.+.+.+.+.| ++++..++|+++..+++++.|++.+ +..+.|+.||.
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 00 00 000000011111121122 223445566666 6888899999999999999998855 46899999999
Q ss_pred ecCCCh
Q 009027 256 AMGNFS 261 (546)
Q Consensus 256 ADG~~S 261 (546)
|+|+..
T Consensus 161 AtGh~~ 166 (534)
T PRK09897 161 ATGHVW 166 (534)
T ss_pred CCCCCC
Confidence 999753
No 139
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.24 E-value=1.7e-05 Score=86.57 Aligned_cols=137 Identities=27% Similarity=0.248 Sum_probs=71.8
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhh-hhccCCCccc
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEAT-ATKFNPNRCG 185 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i-~~~~~~~~v~ 185 (546)
.+||||||||| +|+++|..++++|++|+|+||....+.+-.++ +..+.+.. ...+ ++... ...+. +.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~--~~~~-----~~~~~~~~~~g---~~ 72 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLH--AAER-----ADEARHSEDFG---IK 72 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHH--hhhH-----HHHHHHHHhcC---cc
Confidence 37999999965 68888999999999999999987555321111 22222110 0000 00000 00110 00
Q ss_pred ccCCccccccccc---cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEcCEEEEecCCCh
Q 009027 186 FEGKGEIWVEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFS 261 (546)
Q Consensus 186 f~~~~~l~~~~~l---~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-g~~i~ArlVV~ADG~~S 261 (546)
.. ...+...... ...+ ..+..-+.+.+.+.|++++.++. +. .++..+.|...+ ++++++|.||-|+|...
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gv~~~~g~~-~~--~~~~~~~v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 73 AE-NVGIDFKKVQEWKNGVV--NRLTGGVEGLLKKNKVDIIRGEA-KL--VDPNTVRVMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred cC-CCccCHHHHHHHHHHHH--HHHHHHHHHHHHhCCCEEEEEEE-EE--ccCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence 00 0000000000 0001 11222345556677999887743 22 345556666433 46899999999999864
No 140
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.24 E-value=1.9e-05 Score=88.76 Aligned_cols=59 Identities=10% Similarity=0.210 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-E---EE-EEcCCc--EEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V-~~~~g~--~i~ArlVV~ADG~~S~v 263 (546)
..|...|.+++.+.|++++.++.++++..++++ + .+ ...+|+ .++|+-||-|+|..+.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 457778888888889999999999999875443 2 22 123454 68999999999988753
No 141
>PTZ00058 glutathione reductase; Provisional
Probab=98.24 E-value=7.2e-06 Score=91.41 Aligned_cols=40 Identities=33% Similarity=0.422 Sum_probs=33.4
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 009027 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (546)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~ 147 (546)
..+||||||||| +|..+|..+++.|.+|+||||....+.+
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtC 86 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTC 86 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccc
Confidence 347999999965 6888888999999999999998666643
No 142
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.24 E-value=0.001 Score=72.55 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=34.8
Q ss_pred CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (546)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG 258 (546)
++|+.+++|++|+.+++++.|++.+|+++.||.||.|.-
T Consensus 239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 479999999999999999999887888899999998873
No 143
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.22 E-value=2.4e-05 Score=85.26 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCCChHHH
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~i~ArlVV~ADG~~S~vr 264 (546)
.+.+.+.+.+++.|++++.+++++++..+++++.+.+.+| +++.++.||.|.|..+.+.
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 3556677788888999999999999988888888877666 4799999999999887654
No 144
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.21 E-value=1.5e-05 Score=89.45 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE--cCCc-EEEcC-EEEEecCCChH
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK-ILSSH-LIIDAMGNFSP 262 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~~g~-~i~Ar-lVV~ADG~~S~ 262 (546)
.+.+.|.+++.+.|++++.++.|+++..+++.++ |.+ .++. .+.++ -||-|.|..+.
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 3556688888889999999999999988766443 333 2343 57884 68888887773
No 145
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.21 E-value=2.5e-05 Score=88.80 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe---EEEEE-cCCc--EEEcCEEEEecCCChHH
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~-~~g~--~i~ArlVV~ADG~~S~v 263 (546)
.+...|.+++.+.|+++++++.++++..+++. +++.. .+|+ .+.|+-||-|+|..+.+
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 45567888888899999999999999876654 33432 3554 57899999999976643
No 146
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.20 E-value=6.9e-06 Score=89.91 Aligned_cols=138 Identities=20% Similarity=0.129 Sum_probs=71.4
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCcccc-cCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEW-NISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~~-~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~ 185 (546)
.+||||||||| +|..+|..+|++|++|+|||+.. +.+.+-.+ .+..+.+ +....+... +++. ..+ .+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l--~~~a~~~~~--~~~~--~~~---g~~ 73 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKAL--LHVAKVIEE--AKAL--AEH---GIV 73 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHH--HHHHHHHHH--Hhhh--hhc---Ccc
Confidence 47999999965 68888889999999999999874 44432111 1222221 110010000 0000 000 000
Q ss_pred ccCCcccccccccc---ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCCC
Q 009027 186 FEGKGEIWVEDILN---LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF 260 (546)
Q Consensus 186 f~~~~~l~~~~~l~---~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~i~ArlVV~ADG~~ 260 (546)
+.. ..+..+.... -.+ .++.....+.+.+.|++++.++.. ..++..+.|+..+| .++++|.||-|+|..
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gV~~~~g~a~---~~~~~~v~v~~~~g~~~~~~~d~lViATGs~ 147 (471)
T PRK06467 74 FGE-PKIDIDKMRARKEKVV--KQLTGGLAGMAKGRKVTVVNGLGK---FTGGNTLEVTGEDGKTTVIEFDNAIIAAGSR 147 (471)
T ss_pred cCC-CCcCHHHHHHHHHHHH--HHHHHHHHHHHHhCCCEEEEEEEE---EccCCEEEEecCCCceEEEEcCEEEEeCCCC
Confidence 000 0000000000 000 112223344556679999877532 23455677776566 479999999999975
Q ss_pred h
Q 009027 261 S 261 (546)
Q Consensus 261 S 261 (546)
.
T Consensus 148 p 148 (471)
T PRK06467 148 P 148 (471)
T ss_pred C
Confidence 4
No 147
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.19 E-value=3.9e-05 Score=85.64 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=30.4
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
++||||||+ ++|+++|+.++++|.+|+||||.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999996 579999999999999999999988
No 148
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1e-05 Score=87.81 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=76.1
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~r-VlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
.++||+||||| .|+++|.+|.++|.. ++++||+..++. .|..++. -++..... .....| ....|
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg--~W~~~ry-------~~l~~~~p---~~~~~~--~~~p~ 72 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG--TWRYNRY-------PGLRLDSP---KWLLGF--PFLPF 72 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC--cchhccC-------CceEECCc---hheecc--CCCcc
Confidence 37999999976 699999999999999 999999975552 2432100 01110000 000001 00111
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEe--CCeEEEEEcCCcE--EEcCEEEEecCCC
Q 009027 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTY--ENAAVLLLAEGKI--LSSHLIIDAMGNF 260 (546)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~--~dgv~V~~~~g~~--i~ArlVV~ADG~~ 260 (546)
. +.+.... ...+.+.+.+.+.+.+. .+..++.|..+..+ .+.++|+++++.+ ++||.||-|+|..
T Consensus 73 ~-----~~~~~~~----~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~ 143 (443)
T COG2072 73 R-----WDEAFAP----FAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHL 143 (443)
T ss_pred C-----CcccCCC----cccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence 1 0000000 11255666666666655 56666666655544 4489999987664 5699999999996
Q ss_pred h
Q 009027 261 S 261 (546)
Q Consensus 261 S 261 (546)
|
T Consensus 144 ~ 144 (443)
T COG2072 144 S 144 (443)
T ss_pred C
Confidence 5
No 149
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.17 E-value=1.9e-05 Score=86.06 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=70.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
+|||+||||| +|..+|..++++|++|+|+||....+.+-.++ |..+.+ +....+.. .+.. ...+. +...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l--~~~a~~~~--~~~~--~~~~g---~~~~ 72 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVM--WYASDLAE--RMHD--AADYG---FYQN 72 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHH--HHHHHHHH--HHhH--HhhcC---cccC
Confidence 5999999965 68889999999999999999987666432111 222211 00000000 0000 00000 0000
Q ss_pred CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 188 ~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
....+..+..... .+ -..+.+.+...+.+.|++++.++... .++. +|.+ ++++++++.||-|+|...
T Consensus 73 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~--~v~v-~~~~~~~d~vIiAtGs~p 141 (450)
T TIGR01421 73 LENTFNWPELKEK-RDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDG--TVEV-NGRDYTAPHILIATGGKP 141 (450)
T ss_pred CcCccCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCC--EEEE-CCEEEEeCEEEEecCCCC
Confidence 0000000000000 00 01233445556667899999887542 2233 3444 566899999999999764
No 150
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.17 E-value=1.3e-05 Score=87.68 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=73.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
.||||||||| +|.++|..|+++|++|+|+|+..+.+.+..++ |..+.+-.. ..+.. .++. ...+ .+...
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~--a~~~~--~~~~--~~~~---g~~~~ 74 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHS--AEVFQ--TAKK--ASPF---GISVS 74 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHH--HHHHH--HHHH--HHhc---CccCC
Confidence 6999999965 68889999999999999999986655432211 332221110 00000 0000 0000 00000
Q ss_pred CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEEEe-----CCeEEEEEcCC--cEEEcCEEEEecC
Q 009027 188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTY-----ENAAVLLLAEG--KILSSHLIIDAMG 258 (546)
Q Consensus 188 ~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-----~dgv~V~~~~g--~~i~ArlVV~ADG 258 (546)
...+..+..... .+ ..++.+...+.+.+.|++++.+. ++.++.+ ++.+.|.+.+| .++++|.||-|+|
T Consensus 75 -~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATG 151 (472)
T PRK05976 75 -GPALDFAKVQER-KDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATG 151 (472)
T ss_pred -CCccCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCC
Confidence 000000000000 00 01233333445566789998874 3333322 22677777666 4799999999999
Q ss_pred CCh
Q 009027 259 NFS 261 (546)
Q Consensus 259 ~~S 261 (546)
...
T Consensus 152 s~p 154 (472)
T PRK05976 152 SRP 154 (472)
T ss_pred CCC
Confidence 865
No 151
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.17 E-value=2.9e-05 Score=87.30 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=31.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
.+|||||||| +|+++|+.++++|.+|+||||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4699999965 79999999999999999999987654
No 152
>PRK10262 thioredoxin reductase; Provisional
Probab=98.16 E-value=3.3e-05 Score=80.00 Aligned_cols=112 Identities=12% Similarity=0.114 Sum_probs=73.2
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
..+||+||||| +|+++|..|+++|++|+++|+....+.. . ... ++ ..+ .
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~---~-------------~~~--~~-----~~~-------~ 54 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL---T-------------TTT--EV-----ENW-------P 54 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCce---e-------------cCc--eE-----CCC-------C
Confidence 36999999965 6889999999999999999965432210 0 000 00 000 0
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
+. ...++...+.+.+.+.+...+.+++.+ ++++++..++.+.++.++ ..++++.||.|.|...
T Consensus 55 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 55 GD---------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDS-GEYTCDALIIATGASA 117 (321)
T ss_pred CC---------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecC-CEEEECEEEECCCCCC
Confidence 00 011233455667777777777777665 567777777777776543 3799999999999874
No 153
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.16 E-value=2.1e-05 Score=85.72 Aligned_cols=139 Identities=22% Similarity=0.264 Sum_probs=72.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCcccc-cCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEW-NISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~~-~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
+|||+||||| +|+.+|..|+++|++|+|+||+. +.+...-+ .+..+.+...... .. .+++ ...| ..+
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~--~~--~~~~--~~~~----~~~ 74 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLR--LI--GFNQ--NPLY----SSY 74 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHH--HH--HHhh--hhhh----ccc
Confidence 6999999965 68899999999999999999964 44432111 1332222110000 00 0000 0000 000
Q ss_pred cCCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEcCEEEEecCCCh
Q 009027 187 EGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS 261 (546)
Q Consensus 187 ~~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~ArlVV~ADG~~S 261 (546)
.....+..+..+... --...+.+.+.+.+.+.|++++.++. .. .+...+.|...+|+ ++++|.||-|+|...
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~--~~~~~~~v~~~~g~~~~~~~d~lviATGs~p 149 (461)
T PRK05249 75 RVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRA-RF--VDPHTVEVECPDGEVETLTADKIVIATGSRP 149 (461)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EE--ecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 000000000000000 00012334455566678999887742 22 34556777776664 799999999999764
No 154
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.15 E-value=4e-05 Score=85.73 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE-cCCc--EEEc-CEEEEecCCChHHH
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSPVV 264 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~-~~g~--~i~A-rlVV~ADG~~S~vr 264 (546)
|...|.+++.+.|++++.+++++++..+++.|+ |.. .+++ .+.| +-||-|+|..+...
T Consensus 219 l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 219 LAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 445677888889999999999999986544332 212 2343 5667 57888999887643
No 155
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.15 E-value=1.7e-05 Score=85.71 Aligned_cols=135 Identities=14% Similarity=0.129 Sum_probs=88.7
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHH----HHHHHcCCCCcccchhhhhhccCCCcc
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKEL----LELVESGILVEDDIDEATATKFNPNRC 184 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l----~~L~~lGl~~~~~ie~~i~~~~~~~~v 184 (546)
.-+|+|||+ ++|+++|..|.+.|+.|+++||....+. -|..++.+- ...+.+-+ .....-.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG--lW~y~~~~~~~~ss~Y~~l~t------------n~pKe~~ 71 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG--LWKYTENVEVVHSSVYKSLRT------------NLPKEMM 71 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc--eEeecCcccccccchhhhhhc------------cCChhhh
Confidence 458999995 5799999999999999999999987652 233221100 00111000 0000011
Q ss_pred cccCCcccccccc-ccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeC-CeEEEEEcCC----cEEEcCEEEEe
Q 009027 185 GFEGKGEIWVEDI-LNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE-NAAVLLLAEG----KILSSHLIIDA 256 (546)
Q Consensus 185 ~f~~~~~l~~~~~-l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~-dgv~V~~~~g----~~i~ArlVV~A 256 (546)
.|.+ +..++. ..+.-+...+.+.|.+-|..-+. .+.+++++..++... +.|.|.+.++ .+.-+|.||.|
T Consensus 72 ~~~d---fpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVc 148 (448)
T KOG1399|consen 72 GYSD---FPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVC 148 (448)
T ss_pred cCCC---CCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEc
Confidence 1111 111111 23334566899999999988876 899999999998877 6899988653 37889999999
Q ss_pred cCCCh
Q 009027 257 MGNFS 261 (546)
Q Consensus 257 DG~~S 261 (546)
.|++.
T Consensus 149 tGh~~ 153 (448)
T KOG1399|consen 149 TGHYV 153 (448)
T ss_pred ccCcC
Confidence 99994
No 156
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.15 E-value=1.3e-05 Score=89.54 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEcC-EEEEecCCChH
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSH-LIIDAMGNFSP 262 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~-~g~--~i~Ar-lVV~ADG~~S~ 262 (546)
+...|.+.+++.|++++.+++++++..+++.|+ |.+. +++ +++|+ -||-|.|..+.
T Consensus 210 ~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 210 LAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 556677788888999999999999988766443 3332 343 68896 46667766554
No 157
>PRK12839 hypothetical protein; Provisional
Probab=98.13 E-value=4.9e-05 Score=85.20 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-e---EEEEEcCCc-EEE-cCEEEEecCCChH
Q 009027 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-A---AVLLLAEGK-ILS-SHLIIDAMGNFSP 262 (546)
Q Consensus 203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-g---v~V~~~~g~-~i~-ArlVV~ADG~~S~ 262 (546)
+...|...|.+++.+.|++++.++.++++..+++ . |.+...+++ ++. ++-||-|.|..+.
T Consensus 212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 4556677888899999999999999999976543 2 333333444 344 4788888887765
No 158
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.11 E-value=1.6e-05 Score=85.34 Aligned_cols=133 Identities=17% Similarity=0.088 Sum_probs=77.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc---------ccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESGILVEDDIDEATATKFN 180 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~---------r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~ 180 (546)
.||+||||| +|+.+|..||++|++|+|+|+.+..... +..+.|.++...+...|+|.. +++..-.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~-ei~~lg~---- 75 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKT-EMRQLSS---- 75 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHH-HHhhcCe----
Confidence 379999977 6999999999999999999987643211 122344445556667777642 2221100
Q ss_pred CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (546)
Q Consensus 181 ~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~ 259 (546)
..+........+..-.+.+++..+.+.+.+++.+... ++. ...++++.. .+.||.|+|.
T Consensus 76 ---l~~~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItvi-q~eV~dL~~----------------~d~VViATG~ 135 (433)
T TIGR00137 76 ---LIITAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLI-REEVTEIPE----------------EGITVIATGP 135 (433)
T ss_pred ---eeeehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEE-eeeeEEEcc----------------CCeEEEeCCC
Confidence 1111101111122223467999999999999977643 443 445554431 2357777774
Q ss_pred --ChHHHHHhc
Q 009027 260 --FSPVVKQIR 268 (546)
Q Consensus 260 --~S~vr~ql~ 268 (546)
...+.+++.
T Consensus 136 ~~s~~La~~L~ 146 (433)
T TIGR00137 136 LTSPALSEDLK 146 (433)
T ss_pred CccHHHHHHHH
Confidence 344555553
No 159
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.10 E-value=6.7e-05 Score=84.34 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=31.9
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
++||||||+ ++|+++|+.++++|.+|+||||....+
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 689999996 569999999999999999999987654
No 160
>PLN02612 phytoene desaturase
Probab=98.09 E-value=0.0018 Score=72.67 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEcCEEEEecCC
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGN 259 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv--~V~~~~g~~i~ArlVV~ADG~ 259 (546)
+-+.|.+.+++.|++|+.+++|++|..++++. .|.+.+|+++.||.||-|...
T Consensus 310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 33555556667899999999999998876663 366677889999999999754
No 161
>PRK06370 mercuric reductase; Validated
Probab=98.08 E-value=3.8e-05 Score=83.89 Aligned_cols=38 Identities=34% Similarity=0.495 Sum_probs=32.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~ 147 (546)
+||||||||| +|.++|..++++|++|+|+|+....+.+
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c 43 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTC 43 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCce
Confidence 6999999965 6888888999999999999998766643
No 162
>PRK14694 putative mercuric reductase; Provisional
Probab=98.08 E-value=3.4e-05 Score=84.43 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=33.1
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (546)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~ 146 (546)
+.+||||||||| +|.++|..|++.|++|+|||+....+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGt 43 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGT 43 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccc
Confidence 347999999965 688899999999999999999865553
No 163
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.07 E-value=4e-05 Score=85.54 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEeC--Ce---EEEEEcCCc--EEEcCEEEEecCCCh
Q 009027 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE--NA---AVLLLAEGK--ILSSHLIIDAMGNFS 261 (546)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~--dg---v~V~~~~g~--~i~ArlVV~ADG~~S 261 (546)
..+...|.+++.+. |++++.++.++++..++ +. +.+. .++. .++|+-||-|+|..+
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~-~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLL-YQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEE-ECCeEEEEEcCEEEEcCCCCc
Confidence 45667788877654 89999999999998763 32 2222 3454 589999999999854
No 164
>PRK06116 glutathione reductase; Validated
Probab=98.07 E-value=3.4e-05 Score=83.94 Aligned_cols=37 Identities=38% Similarity=0.600 Sum_probs=31.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~ 146 (546)
+|||+||||| +|+++|..|+++|++|+|+|+....+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~ 41 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGT 41 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhh
Confidence 6999999965 688899999999999999999765553
No 165
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.06 E-value=8.7e-05 Score=82.63 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEeC------CeEE-EEE---cCCc--EEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE------NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~------dgv~-V~~---~~g~--~i~ArlVV~ADG~~S~v 263 (546)
..+...|.+++.+. |++++.++.++++..++ +.++ |.+ .+++ .+.|+.||.|+|..+.+
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence 45777888888765 78999999999987653 3332 222 2343 69999999999998854
No 166
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.04 E-value=6e-05 Score=83.44 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEcCEEEEecCCChH
Q 009027 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~-~g~--~i~ArlVV~ADG~~S~ 262 (546)
..+.+.|.+++.+. |++++.++.++++..+++.++ |.+. ++. .++|+-||.|+|..+.
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 45778888888765 899999999999876655332 2222 232 6999999999998763
No 167
>PLN02507 glutathione reductase
Probab=98.04 E-value=5.2e-05 Score=83.65 Aligned_cols=142 Identities=19% Similarity=0.194 Sum_probs=72.0
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC----------CCCCCccccc-CCHHHHHHHHHcCCCCcccchhhh
Q 009027 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN----------TLKGREQEWN-ISRKELLELVESGILVEDDIDEAT 175 (546)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~----------~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i 175 (546)
..+||||||||| .|..+|..+++.|.+|+|||+. .+.+.+-.++ +.-+.+ +....+.. ++.+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l--~~~a~~~~--~~~~-- 96 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKIL--VYGATFGG--EFED-- 96 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHH--HHHHHHHH--HHHH--
Confidence 347999999965 6888888999999999999962 2222211111 221221 10000000 0000
Q ss_pred hhccCCCcccccCCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEcCE
Q 009027 176 ATKFNPNRCGFEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHL 252 (546)
Q Consensus 176 ~~~~~~~~v~f~~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~Arl 252 (546)
..++. +.......+..+..+... -.-.++...+.+.+...|++++.+ ++.. .+++.+.|++.+|+ ++++|.
T Consensus 97 ~~~~G---~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~--vd~~~v~V~~~~g~~~~~~~d~ 170 (499)
T PLN02507 97 AKNYG---WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKI--VGPNEVEVTQLDGTKLRYTAKH 170 (499)
T ss_pred HHhcC---cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEE--ecCCEEEEEeCCCcEEEEEcCE
Confidence 00110 000000000000000000 001123344455566678988877 3332 35567888877765 699999
Q ss_pred EEEecCCCh
Q 009027 253 IIDAMGNFS 261 (546)
Q Consensus 253 VV~ADG~~S 261 (546)
||-|+|...
T Consensus 171 LIIATGs~p 179 (499)
T PLN02507 171 ILIATGSRA 179 (499)
T ss_pred EEEecCCCC
Confidence 999999864
No 168
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.04 E-value=4.9e-05 Score=84.25 Aligned_cols=137 Identities=20% Similarity=0.165 Sum_probs=80.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| +|+++|..|.+.|+.|+++||+...+ ..|..+...-. ....++ +.+. .........|.+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG--G~W~~~~~~~~--g~~~~y-----~sl~-~n~sk~~~~fsd-- 70 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG--GLWRYTENPED--GRSSVY-----DSLH-TNTSKEMMAFSD-- 70 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS--GGGCHSTTCCC--SEGGGS-----TT-B--SS-GGGSCCTT--
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC--ccCeeCCcCCC--Cccccc-----cceE-EeeCchHhcCCC--
Confidence 48999965 68889999999999999999998766 22321100000 000000 0000 000001112221
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeCC-----eEEEEEcC-Cc--EEEcCEEEEecCCC
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN-----AAVLLLAE-GK--ILSSHLIIDAMGNF 260 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d-----gv~V~~~~-g~--~i~ArlVV~ADG~~ 260 (546)
...|+....-.....+.+.|.+-|...+. .|+++|+|+++...+| .|.|++++ |+ +-..|.||.|.|++
T Consensus 71 -fp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 71 -FPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp -S-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred -cCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence 11111111225678899999999988776 7899999999988764 68888754 43 34568899999998
Q ss_pred h
Q 009027 261 S 261 (546)
Q Consensus 261 S 261 (546)
+
T Consensus 150 ~ 150 (531)
T PF00743_consen 150 S 150 (531)
T ss_dssp S
T ss_pred C
Confidence 7
No 169
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.03 E-value=7.2e-05 Score=80.92 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeC-Ce-EE-EEEc-CCcEEEcCEEEEecCCChH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA-AV-LLLA-EGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dg-v~-V~~~-~g~~i~ArlVV~ADG~~S~ 262 (546)
..+.+.|.+++++.|++++.+++++++..++ ++ ++ |... ++.+++|+-||.|.|..+.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 4577889999999999999999999998763 33 32 3333 3358999999999997765
No 170
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.03 E-value=6.4e-05 Score=84.07 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE-cCCc--EEEcC-EEEEecCCChH
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSSH-LIIDAMGNFSP 262 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~-~~g~--~i~Ar-lVV~ADG~~S~ 262 (546)
.+...|.+++++.|++++.+++++++..+++.|+ |.. .+++ +++|+ -||-|.|..+.
T Consensus 209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 209 ALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 4566778888889999999999999987765432 222 2443 68895 57777776665
No 171
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.02 E-value=7.1e-05 Score=82.87 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=31.7
Q ss_pred cccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGGg~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
++||||||+|+|+++|+.+|+.|.+|+||||....+
T Consensus 7 ~~DVvVVG~GaGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 7 EVDVLVAGSGGGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred ccCEEEECchHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 789999994488889999999999999999987644
No 172
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.99 E-value=0.0001 Score=60.27 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=61.4
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 009027 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (546)
Q Consensus 113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~~ 191 (546)
|+||||| .|+-+|..|++.|.+|.|+++.+.+. + .
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~-----------------~-------------------------- 37 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-P-----------------G-------------------------- 37 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-T-----------------T--------------------------
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-h-----------------h--------------------------
Confidence 7899975 69999999999999999999886322 0 0
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC
Q 009027 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG 245 (546)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g 245 (546)
+ ...+.+.+.+.+++.|++++.++.+.++..+++++.|+++||
T Consensus 38 ----------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 38 ----------F-DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp ----------S-SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred ----------c-CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 0 023445667777788999999999999999998877888775
No 173
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.99 E-value=0.00016 Score=77.22 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=56.6
Q ss_pred ceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCe-EEEEEcC---C--cEEEcCEEEEecCCChH-HHHHhcCC
Q 009027 200 LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA-AVLLLAE---G--KILSSHLIIDAMGNFSP-VVKQIRSG 270 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg-v~V~~~~---g--~~i~ArlVV~ADG~~S~-vr~ql~~~ 270 (546)
.-||-..|-+.|.+.+.+. |+++..+++|+++.+.+|+ |.|.+.+ + ++++||+|+..-|..|- +.+..|++
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP 254 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence 4477778888888888877 8899999999999999887 9888743 2 48999998777776664 77777763
No 174
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=6.6e-05 Score=82.33 Aligned_cols=31 Identities=39% Similarity=0.528 Sum_probs=28.6
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVER 140 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr 140 (546)
+|||||||| ++|+++|..+++.|.+|+|||+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 699999996 5688999999999999999998
No 175
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.97 E-value=0.0001 Score=83.08 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=27.2
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|||||| ++|+++|+.+++.|.+|+||||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 689995 579999999999999999999987
No 176
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.97 E-value=6.4e-05 Score=84.42 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEc-CEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSS-HLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~-~g~--~i~A-rlVV~ADG~~S~v 263 (546)
..+...|.+++++.|++++.+++++++..+++.++ |.+. +++ ++.| +-||-|.|..+.-
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 34667788899999999999999999987655443 3332 343 5786 6788899988764
No 177
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.97 E-value=0.00016 Score=87.42 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=32.6
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
+.++|||||||| +|+++|+..++.|.+|+||||.+..+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 346999999965 68899999999999999999987654
No 178
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.96 E-value=0.00016 Score=81.51 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeC---C---eEEE-EEcCCc--EEEcCEEEEecCCCh
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE---N---AAVL-LLAEGK--ILSSHLIIDAMGNFS 261 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~---d---gv~V-~~~~g~--~i~ArlVV~ADG~~S 261 (546)
..+...|...+.+.+++++.++.++++..++ + |+.+ ...+|+ .+.|+-||-|+|..+
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 3455666666767778999999999998764 2 3333 223454 689999999999876
No 179
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.95 E-value=0.00016 Score=73.77 Aligned_cols=71 Identities=21% Similarity=0.385 Sum_probs=53.0
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe---------CC-----------eEEEEEcCC--cEEEcCEEEEecCC
Q 009027 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---------EN-----------AAVLLLAEG--KILSSHLIIDAMGN 259 (546)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---------~d-----------gv~V~~~~g--~~i~ArlVV~ADG~ 259 (546)
+|+..|...+++++...|+.+..+ +|++...+ ++ ++.|...|+ +++++.++|-|.|+
T Consensus 240 fdpw~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa 318 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGA 318 (509)
T ss_pred cCHHHHHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCc
Confidence 688899999999999999876644 56665443 22 244444442 48999999999999
Q ss_pred ChH-HHHHhcCCCCC
Q 009027 260 FSP-VVKQIRSGRKP 273 (546)
Q Consensus 260 ~S~-vr~ql~~~~~~ 273 (546)
.|- |++.++++.++
T Consensus 319 ~s~QvArlAgIG~g~ 333 (509)
T KOG2853|consen 319 WSGQVARLAGIGKGP 333 (509)
T ss_pred cHHHHHHHhccCCCC
Confidence 997 88888888554
No 180
>PLN02546 glutathione reductase
Probab=97.94 E-value=0.00012 Score=81.69 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcC
Q 009027 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVER 140 (546)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr 140 (546)
..+|||+||||| .|..+|..+|++|.+|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 447999999966 577788899999999999996
No 181
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.93 E-value=4.7e-05 Score=82.96 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=29.1
Q ss_pred cccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 009027 110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE 147 (546)
Q Consensus 110 ~yDVIIVGGg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~ 147 (546)
+|||||||||+|+..| +++..|.||+|||+....+.+
T Consensus 2 ~yD~vvIG~G~~g~~a-a~~~~g~~V~lie~~~~GGtC 38 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIP-DPRFADKRIAIVEKGTFGGTC 38 (452)
T ss_pred CcCEEEECCCHHHHHH-HHHHCCCeEEEEeCCCCCCee
Confidence 6999999987655555 345679999999998877754
No 182
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.92 E-value=8.9e-05 Score=81.11 Aligned_cols=37 Identities=41% Similarity=0.564 Sum_probs=30.9
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC-CCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERN-TLKGR 146 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~-~~~~~ 146 (546)
+|||+|||| |+|..+|..++++|++|+|||+. .+.+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~ 41 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGT 41 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeee
Confidence 599999995 56888999999999999999974 45443
No 183
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.90 E-value=0.00011 Score=79.56 Aligned_cols=33 Identities=39% Similarity=0.539 Sum_probs=29.8
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
+||||||||| +|+++|..|+++|++|+|+||..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 6999999965 68889999999999999999975
No 184
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.90 E-value=0.00016 Score=76.66 Aligned_cols=106 Identities=17% Similarity=0.272 Sum_probs=79.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~ 189 (546)
-.|+||||| .|+-+|..|+++|.+|.++|+.+.... ..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-----------------~~------------------------ 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-----------------SL------------------------ 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-----------------hh------------------------
Confidence 369999976 699999999999999999997642100 00
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHHh
Q 009027 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI 267 (546)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql 267 (546)
. +..+...+.+.+.+.|++++.+++++++..+++++.|++.+|+++.+++||.|.|..+ .+.+++
T Consensus 181 ------------~-~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~ 247 (377)
T PRK04965 181 ------------M-PPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA 247 (377)
T ss_pred ------------C-CHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC
Confidence 0 0122344566677789999999999999877777888888888999999999999855 466665
Q ss_pred cCC
Q 009027 268 RSG 270 (546)
Q Consensus 268 ~~~ 270 (546)
++.
T Consensus 248 gl~ 250 (377)
T PRK04965 248 GLA 250 (377)
T ss_pred CCC
Confidence 543
No 185
>PRK13748 putative mercuric reductase; Provisional
Probab=97.89 E-value=0.00013 Score=81.54 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=32.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~ 146 (546)
+||||||||| .|.++|..|++.|.+|+|||+....+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~ 135 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGT 135 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceee
Confidence 6999999965 688888899999999999999865554
No 186
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.88 E-value=7.9e-05 Score=74.03 Aligned_cols=133 Identities=19% Similarity=0.229 Sum_probs=74.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-C-----cc-cc-c-----CC------HHHHHHHHHcCCCCccc
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-R-----EQ-EW-N-----IS------RKELLELVESGILVEDD 170 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~-~-----~r-~~-~-----Is------~~~l~~L~~lGl~~~~~ 170 (546)
.+|+|||+| +|+++|..|+.+|+.|+|+||..-.+ + .. +| . +. .+.++.+.+-|+.+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~--- 78 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVD--- 78 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCcee---
Confidence 369999965 69999999999999999999987432 1 11 11 0 11 12234444444432
Q ss_pred chhhhhhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEE
Q 009027 171 IDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILS 249 (546)
Q Consensus 171 ie~~i~~~~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-~~i~ 249 (546)
.+.+....|.+...-...+...+.=++ .+ ..|.+ +.....+|+.+++|+.+...++.|++++++| +...
T Consensus 79 -------~W~~~~~~~~~~~~~~~~d~~pyvg~p-gm-salak-~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~ 148 (331)
T COG3380 79 -------VWTPAVWTFTGDGSPPRGDEDPYVGEP-GM-SALAK-FLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQ 148 (331)
T ss_pred -------eccccccccccCCCCCCCCCCccccCc-ch-HHHHH-HHhccchhhhhhhhhhheecCCeeEEEecCCCcccc
Confidence 111222222221000000000011001 11 12222 3334568899999999999999999999665 4677
Q ss_pred cCEEEEe
Q 009027 250 SHLIIDA 256 (546)
Q Consensus 250 ArlVV~A 256 (546)
++.||-|
T Consensus 149 ~d~vvla 155 (331)
T COG3380 149 FDDVVLA 155 (331)
T ss_pred cceEEEe
Confidence 8877765
No 187
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.86 E-value=1.4e-05 Score=87.99 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCEEEEecCC
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN 259 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~ArlVV~ADG~ 259 (546)
.+-++|.+.++++|++|+.+++|++|..+++ ++.+...+|..+.+|.||.+...
T Consensus 225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 4678899999999999999999999998877 56777766778999999987766
No 188
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.83 E-value=0.00015 Score=73.26 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=53.3
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-----EEEEEcCCcEEEcCEEEEecCCChHHH-HHhcCCCC
Q 009027 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-----AVLLLAEGKILSSHLIIDAMGNFSPVV-KQIRSGRK 272 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-----v~V~~~~g~~i~ArlVV~ADG~~S~vr-~ql~~~~~ 272 (546)
.||-..+-..+.+.+...|..+..+-++.++.+..+. ++|.-..+++++++.+|.|.|-.|--. ...+....
T Consensus 192 IvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~d 269 (453)
T KOG2665|consen 192 IVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELD 269 (453)
T ss_pred eeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCC
Confidence 4777777778888899999999999999999776553 333322356999999999999887644 44444443
No 189
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.83 E-value=0.00011 Score=81.73 Aligned_cols=37 Identities=35% Similarity=0.536 Sum_probs=33.2
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR 146 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~ 146 (546)
+|||||||| ++|+.+|..+|.+|++|+|+||....+.
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 799999995 5799999999999999999999987663
No 190
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.82 E-value=2.1e-05 Score=82.52 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=77.4
Q ss_pred cccEEEEc-chHHHHHHHHHHhCC-CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCC-Ccccc
Q 009027 110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGF 186 (546)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LA~~G-~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~-~~v~f 186 (546)
.||+|+|| ||.++++|+.|...+ ++++.+||.+....+.++-+....++. -. +..+. +-.+| ...+|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~----~f-----l~Dlv-t~~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQV----SF-----LKDLV-TLRDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-----T-----TSSSS-TTT-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCcccc----cc-----ccccC-cCcCCCCcccH
Confidence 59999999 778999999998664 999999998866555443222111100 00 11111 11111 11222
Q ss_pred cC----Cccccccccc-cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC----eEEEEEc----CCcEEEcCEE
Q 009027 187 EG----KGEIWVEDIL-NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLA----EGKILSSHLI 253 (546)
Q Consensus 187 ~~----~~~l~~~~~l-~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~~~----~g~~i~ArlV 253 (546)
.. ...+..-... .....+..+.+.|.-.+.+....+..+++|++|...++ .+.|.+. +++++.||-|
T Consensus 72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~v 151 (341)
T PF13434_consen 72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNV 151 (341)
T ss_dssp HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEE
T ss_pred HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeE
Confidence 11 1111110000 12356888999998888777767999999999987654 4788873 2458999999
Q ss_pred EEecCCC
Q 009027 254 IDAMGNF 260 (546)
Q Consensus 254 V~ADG~~ 260 (546)
|-|.|..
T Consensus 152 Vla~G~~ 158 (341)
T PF13434_consen 152 VLATGGQ 158 (341)
T ss_dssp EE----E
T ss_pred EECcCCC
Confidence 9999944
No 191
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.80 E-value=0.00026 Score=76.79 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=29.9
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
+||||||||| +|+.+|..|+++|++|+|||+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 5999999965 68899999999999999999874
No 192
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.79 E-value=0.00026 Score=77.45 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=32.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE 147 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~ 147 (546)
+|||+||||| +|.++|..++++|.+|+|||+....+.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c 42 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVC 42 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCce
Confidence 5999999965 6888888999999999999998666543
No 193
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.77 E-value=0.00041 Score=81.93 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=31.3
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~ 143 (546)
.++||||||| ++|+++|+.+++.|.+|+||||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 4689999995 5799999999999999999999875
No 194
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.77 E-value=0.00024 Score=77.66 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=74.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc-
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE- 187 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~- 187 (546)
-|||||||| .|..+|..++++|.+|+|+||....+.+--++ +..+.+ +....+.. .+.. ...+. +...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l--~~~a~~~~--~~~~--~~~~g---~~~~~ 72 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTL--IATAEVRT--ELRR--AAELG---IRFID 72 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHH--HHHHHHHH--HHHH--HHhCC---ccccc
Confidence 389999965 68888889999999999999987666432221 221211 10000000 0000 00000 0000
Q ss_pred -CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEE--EeCCeEEEEEcCCc--EEEcCEEEEecCCC
Q 009027 188 -GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSIC--TYENAAVLLLAEGK--ILSSHLIIDAMGNF 260 (546)
Q Consensus 188 -~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~--~~~dgv~V~~~~g~--~i~ArlVV~ADG~~ 260 (546)
....+..+..... ++ ...+.+.+.+.+.+.|++++.++- +.++ .+++.+.|...+|+ ++++|.||-|+|..
T Consensus 73 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~ 150 (466)
T PRK07845 73 DGEARVDLPAVNAR-VKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGAS 150 (466)
T ss_pred CcccccCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCC
Confidence 0000000000000 00 011233455666778999988753 2222 45667888776665 79999999999987
Q ss_pred h
Q 009027 261 S 261 (546)
Q Consensus 261 S 261 (546)
.
T Consensus 151 p 151 (466)
T PRK07845 151 P 151 (466)
T ss_pred C
Confidence 5
No 195
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.74 E-value=0.00017 Score=77.55 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE--EEEcC---Cc--EEEcCEEEEecCCChHHHHHhc
Q 009027 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLAE---GK--ILSSHLIIDAMGNFSPVVKQIR 268 (546)
Q Consensus 203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~~~---g~--~i~ArlVV~ADG~~S~vr~ql~ 268 (546)
+-.++.-.+.=-|..+|+.+.-..+|.++..++++-+ +.+.| |+ +|+|+.||-|.|..|---++..
T Consensus 222 nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Md 294 (680)
T KOG0042|consen 222 NDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMD 294 (680)
T ss_pred chHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhc
Confidence 4456666666677788999988889999887777622 22222 44 7999999999999987444543
No 196
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.74 E-value=0.0005 Score=74.27 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=35.5
Q ss_pred EEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (546)
Q Consensus 221 ~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~ 260 (546)
+|+.+++|++|..+++++.|.+++|+++.||.||.|.-..
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHP 274 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHH
Confidence 7999999999999888998888888899999999986643
No 197
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.73 E-value=0.00021 Score=77.85 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=31.1
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
+||||||||| +|+++|..|++.|++|+|||+....+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG 39 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG 39 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccc
Confidence 6999999965 68889999999999999999965544
No 198
>PRK07846 mycothione reductase; Reviewed
Probab=97.73 E-value=0.00021 Score=77.89 Aligned_cols=37 Identities=35% Similarity=0.506 Sum_probs=28.1
Q ss_pred cccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 009027 110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE 147 (546)
Q Consensus 110 ~yDVIIVGGg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~ 147 (546)
+|||||||||+|+..|+ +++.|.||+|||+....+.+
T Consensus 1 ~yD~vVIG~G~~g~~aa-~~~~G~~V~lie~~~~GGtC 37 (451)
T PRK07846 1 HYDLIIIGTGSGNSILD-ERFADKRIAIVEKGTFGGTC 37 (451)
T ss_pred CCCEEEECCCHHHHHHH-HHHCCCeEEEEeCCCCCCcc
Confidence 48999999876555443 34569999999998776654
No 199
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00039 Score=74.00 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=39.4
Q ss_pred HHHHHHH-hcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEe
Q 009027 210 IVKKRFI-SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (546)
Q Consensus 210 ~L~~~a~-~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~A 256 (546)
.|.+++. +.|..|..+++|.+|.+++++|+|++.+..++.|+++|.+
T Consensus 210 ~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~t 257 (450)
T COG1231 210 QLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVT 257 (450)
T ss_pred HHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEe
Confidence 4555554 4577999999999999999999999977568999999977
No 200
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.71 E-value=0.00048 Score=63.95 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=35.5
Q ss_pred cCCEE-EeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027 218 LGGVI-FEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (546)
Q Consensus 218 ~G~~v-~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~ 259 (546)
.|++| +...+|+++...+++..|.+++|..+.++.||-|.|+
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 35533 3466899999999999999999999999999999997
No 201
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.69 E-value=0.0004 Score=82.76 Aligned_cols=109 Identities=16% Similarity=0.210 Sum_probs=68.3
Q ss_pred CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
.++||+|||| ++|+++|..+++.|++|+|+|+.+.++.. +.. ... .+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~----~~~-------------------------~~~--~~~ 210 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS----LLS-------------------------EAE--TID 210 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCe----eec-------------------------ccc--ccC
Confidence 3689999995 57999999999999999999988754311 000 000 000
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEE-E--------cC---C--cEEEcCE
Q 009027 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLL-L--------AE---G--KILSSHL 252 (546)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~-~--------~~---g--~~i~Arl 252 (546)
..+...+.+.+.+++.+.+ ++++.+++|.++..+..-..+. . .+ + .+++++-
T Consensus 211 -------------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~ 277 (985)
T TIGR01372 211 -------------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKR 277 (985)
T ss_pred -------------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCE
Confidence 0122344445666666664 8999999998764321111111 0 01 1 1689999
Q ss_pred EEEecCCCh
Q 009027 253 IIDAMGNFS 261 (546)
Q Consensus 253 VV~ADG~~S 261 (546)
||-|+|..-
T Consensus 278 VILATGa~~ 286 (985)
T TIGR01372 278 VVLATGAHE 286 (985)
T ss_pred EEEcCCCCC
Confidence 999999863
No 202
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.68 E-value=0.00017 Score=78.78 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=31.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~ 146 (546)
||||||||| .|.++|..++++|++|+|+||.++.+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCC
Confidence 799999965 688889999999999999999876664
No 203
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.67 E-value=0.0005 Score=73.56 Aligned_cols=102 Identities=16% Similarity=0.294 Sum_probs=75.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| +|+-+|..|++.|.+|.|+|+.+.+- .. .
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l---------------~~---------------~------------ 183 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVM---------------GR---------------N------------ 183 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch---------------hh---------------h------------
Confidence 59999976 69999999999999999999765210 00 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH--HHHHhc
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR 268 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~--vr~ql~ 268 (546)
. ...+.+.+.+.+.+.|++++.+++++++.. ++.+.|++++|+++.|++||.|.|.... +.+.++
T Consensus 184 -----------~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~g 250 (396)
T PRK09754 184 -----------A-PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQLAREAN 250 (396)
T ss_pred -----------c-CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcC
Confidence 0 012334556666778999999999999865 5567788888889999999999998654 334443
No 204
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=8e-05 Score=76.13 Aligned_cols=110 Identities=23% Similarity=0.303 Sum_probs=78.3
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
.|||+|||| |+|.++|...||+|+|.-|+-. .|.+. .|+.++ ||..|..
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae-rfGGQ------------vldT~~------IENfIsv----------- 260 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE-RFGGQ------------VLDTMG------IENFISV----------- 260 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhh-hhCCe------------eccccc------hhheecc-----------
Confidence 599999996 5799999999999999977642 23331 133333 2222211
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe---CCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAEGKILSSHLIIDAMGNF 260 (546)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dgv~V~~~~g~~i~ArlVV~ADG~~ 260 (546)
+. .+-.+|-..|.++.++..++++...+.+++... ++-..|++.+|..+++|-||-+.|++
T Consensus 261 ------~~-----teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 261 ------PE-----TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred ------cc-----ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 11 122467788888888888888877777777653 45678999999999999999999976
No 205
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.62 E-value=3.2e-05 Score=73.82 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=66.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
|||||||| +|+++|..|++.|++|+|+|+.+....... .++.. .+ ... ..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~-~~~~~---~~--------------~~~-----------~~ 51 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSG-CIPSP---LL--------------VEI-----------AP 51 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHS-HHHHH---HH--------------HHH-----------HH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccc-ccccc---cc--------------ccc-----------cc
Confidence 79999965 689999999999999999987653111000 00000 00 000 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-----EEE---EcCCcEEEcCEEEEecCCCh
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-----VLL---LAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-----~V~---~~~g~~i~ArlVV~ADG~~S 261 (546)
.... . . ...+. -+.+++...+++++.++++.+++.....+ .+. ..++.++.++.||.|+|..+
T Consensus 52 ~~~~---~---~-~~~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 52 HRHE---F---L-PARLF-KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp HHHH---H---H-HHHHG-HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred cccc---c---c-ccccc-ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 0000 0 0 00000 34445556788998889999998777742 232 22355899999999999654
No 206
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.00013 Score=78.95 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=78.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC-CCCccc----ccCCHHH-HHHHHHcCCCCcccchhhhhhccCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQE----WNISRKE-LLELVESGILVEDDIDEATATKFNPN 182 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~-~~~~r~----~~Is~~~-l~~L~~lGl~~~~~ie~~i~~~~~~~ 182 (546)
+||||||||| +|+-+|++.||.|.+|+|+=-+.. .+...| .++..+- +...+.||=. +-..+ ...
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~----Mg~~~----D~~ 75 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGL----MGKAA----DKA 75 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccch----HHHhh----hhc
Confidence 5999999988 799999999999999999964432 111000 0111110 0111222200 00000 011
Q ss_pred cccccC----Ccc-ccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEeCCe--EEEEEcCCcEEEcCEEE
Q 009027 183 RCGFEG----KGE-IWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENA--AVLLLAEGKILSSHLII 254 (546)
Q Consensus 183 ~v~f~~----~~~-l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dg--v~V~~~~g~~i~ArlVV 254 (546)
.+.|.- +.+ ++. +-..+|+....+.+.+.+....+ .++. ..|+++..+++. +-|.+.+|..+.|+-||
T Consensus 76 ~IQ~r~LN~sKGPAVra---~RaQaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~~~~v~GV~t~~G~~~~a~aVV 151 (621)
T COG0445 76 GIQFRMLNSSKGPAVRA---PRAQADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEEGQRVVGVVTADGPEFHAKAVV 151 (621)
T ss_pred CCchhhccCCCcchhcc---hhhhhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcCCCeEEEEEeCCCCeeecCEEE
Confidence 122210 111 121 11346666667777777766555 6554 457777775553 44667789999999999
Q ss_pred EecCCC
Q 009027 255 DAMGNF 260 (546)
Q Consensus 255 ~ADG~~ 260 (546)
-+.|.+
T Consensus 152 lTTGTF 157 (621)
T COG0445 152 LTTGTF 157 (621)
T ss_pred Eeeccc
Confidence 999976
No 207
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.56 E-value=0.00058 Score=75.11 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=27.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCC
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERN 141 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~ 141 (546)
.+||||||||| .|..+|..+|++ |.+|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 37999999976 566777899996 9999999974
No 208
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.55 E-value=0.0011 Score=72.32 Aligned_cols=98 Identities=14% Similarity=0.213 Sum_probs=76.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... . .
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~- 213 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL---------------------S---------------------F- 213 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------C---------------------c-
Confidence 59999976 69999999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
+| ..+.+.+.+.+++.|++++.+++++++..+++++.+++++|+++.++.||.|.|......
T Consensus 214 -----------~d-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 214 -----------LD-DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred -----------CC-HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 00 123345566667789999999999999877778888887788999999999999887653
No 209
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.55 E-value=7.2e-05 Score=82.37 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChHHHHHh
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQI 267 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~vr~ql 267 (546)
..+.+.|.+.+++.|++|+.+++|+++..+++. +.|.+.+|+++.|+.||.|.|....+.+.+
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 356678888999999999999999999877654 346677788899999999999887776554
No 210
>PRK14727 putative mercuric reductase; Provisional
Probab=97.54 E-value=0.00074 Score=74.16 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=31.3
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC-CCCC
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKG 145 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~-~~~~ 145 (546)
.+||||||||| +|..+|..|+++|.+|+|+||. ...+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG 53 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG 53 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence 36999999965 6888999999999999999997 4444
No 211
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.50 E-value=0.001 Score=73.13 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=28.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~ 141 (546)
+||||||||| .|..+|..+++.|.+|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5999999965 6888888999999999999974
No 212
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.49 E-value=0.001 Score=73.40 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~ 141 (546)
+||||||||| +|..+|..++++|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 6999999965 6888999999999999999973
No 213
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.49 E-value=0.00014 Score=57.87 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=27.0
Q ss_pred EEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 115 VCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 115 IVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
||||| .|+++|..|+++|++|+|+|++..++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 78865 69999999999999999999998765
No 214
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.48 E-value=0.00072 Score=73.43 Aligned_cols=39 Identities=36% Similarity=0.530 Sum_probs=32.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC-CCCCCc
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKGRE 147 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~-~~~~~~ 147 (546)
.+||||||||| .|-.+|..+|+.|.+|+++|+. ...+.+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtC 43 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTC 43 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceE
Confidence 37999999965 6778888999999999999999 566654
No 215
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.48 E-value=0.0007 Score=76.92 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=30.8
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC--CCCCC
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN--TLKGR 146 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~--~~~~~ 146 (546)
.+||||||||| .|..+|..+|++|.||+|||+. ...+.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGt 155 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGT 155 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccc
Confidence 47999999976 5777778999999999999975 44553
No 216
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.45 E-value=0.00035 Score=82.45 Aligned_cols=98 Identities=23% Similarity=0.336 Sum_probs=63.3
Q ss_pred cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
..+|+||| ||+|+++|..|+++|++|+|+|+...++ |++. |.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G------------------G~l~-----------yG-------- 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG------------------GVLR-----------YG-------- 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC------------------ceEE-----------cc--------
Confidence 46899999 5689999999999999999999886433 1110 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
.|+ +..+. .+.+...+.+++.|++++.++.+- ..+++++......|-||-|.|+..
T Consensus 349 -----IP~---~rlp~-~vi~~~i~~l~~~Gv~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~~ 404 (944)
T PRK12779 349 -----IPE---FRLPN-QLIDDVVEKIKLLGGRFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAGL 404 (944)
T ss_pred -----CCC---CcChH-HHHHHHHHHHHhhcCeEEEeEEec--------cEEeHHHhccccCCEEEEeCCCCC
Confidence 000 00111 223333566667899998887542 234454444456788999999863
No 217
>PLN02568 polyamine oxidase
Probab=97.42 E-value=0.0027 Score=70.70 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG 258 (546)
|.+.|.+.+. +..|+.+++|+.|...+++++|++.+|++++|+.||.+-=
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 4444444432 3479999999999999999999998888999999998754
No 218
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.41 E-value=0.0016 Score=71.12 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=30.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~ 146 (546)
+||||||| +|.++|..+++.|.+|+||||....+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~ 37 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGT 37 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccccc
Confidence 69999965 688888899999999999999877664
No 219
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.41 E-value=0.0009 Score=71.84 Aligned_cols=147 Identities=16% Similarity=0.275 Sum_probs=84.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-------CCH------HHHHHHHH-cCCCCcccchhhhh
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-------ISR------KELLELVE-SGILVEDDIDEATA 176 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-------Is~------~~l~~L~~-lGl~~~~~ie~~i~ 176 (546)
||+|||+| +|+++|+.|++. ++|+||=|.+.....--|+ ++. .....|.. -|+-++..++.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 99999965 699999999998 9999999998764221221 111 11111211 13333221111110
Q ss_pred hcc------CCCcccccCCc---------------c-ccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEE
Q 009027 177 TKF------NPNRCGFEGKG---------------E-IWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICT 233 (546)
Q Consensus 177 ~~~------~~~~v~f~~~~---------------~-l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~ 233 (546)
... -...+.|+... + ++..+ ---..+...|.+++++ .++++++++.+.++..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-----~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~ 162 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-----ATGKEIMTALLKKVRNRPNITVLEGAEALDLII 162 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-----CccHHHHHHHHHHHhcCCCcEEEecchhhhhhh
Confidence 000 00112222211 0 11111 1123567888888877 4779999999999988
Q ss_pred eCC----eEEEEEcCC--cEEEcCEEEEecCCChHHH
Q 009027 234 YEN----AAVLLLAEG--KILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 234 ~~d----gv~V~~~~g--~~i~ArlVV~ADG~~S~vr 264 (546)
+++ |+.+...++ .+++|+.||-|+|.-+.+=
T Consensus 163 ~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 163 EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred cCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 888 333333323 4899999999999877554
No 220
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.34 E-value=0.0026 Score=69.35 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=73.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- . .
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~- 210 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL---------------------P---------------------G- 210 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC---------------------C---------------------c-
Confidence 58999975 69989999999999999999864210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g---~~i~ArlVV~ADG~~S~v 263 (546)
.+ ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+.++ +++.++.||-|.|.....
T Consensus 211 -----------~~-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 211 -----------ED-KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred -----------CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 00 12234455666778999999999999988777887777655 679999999999988654
No 221
>PRK12831 putative oxidoreductase; Provisional
Probab=97.31 E-value=0.00054 Score=74.98 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=31.3
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
..||+|||| ++|+++|..|+++|++|+|+|+...++
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G 176 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG 176 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 579999995 579999999999999999999876543
No 222
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00086 Score=71.31 Aligned_cols=137 Identities=21% Similarity=0.294 Sum_probs=74.3
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC-CCCccc----ccCCHH----HHHHHHHcCCCCcccchhhhhhc
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQE----WNISRK----ELLELVESGILVEDDIDEATATK 178 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~-~~~~r~----~~Is~~----~l~~L~~lGl~~~~~ie~~i~~~ 178 (546)
..||||||||| +|+-+|++.||.|.+++|+-.+-. .+...+ .+|-.+ |+..|. |+ +..-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALd--Gl---------~~rv 95 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALD--GL---------CSRV 95 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhc--ch---------Hhhh
Confidence 37999999988 799999999999999999975532 121100 112221 222221 11 1111
Q ss_pred cCCCcccccC-----CccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEe-CC--e---EEEEEcCCc
Q 009027 179 FNPNRCGFEG-----KGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTY-EN--A---AVLLLAEGK 246 (546)
Q Consensus 179 ~~~~~v~f~~-----~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~-~d--g---v~V~~~~g~ 246 (546)
.....++|+- +..+|.+ -..+|+......+.+.+..... +|+++ .|.++... ++ + .-|.+.+|.
T Consensus 96 cD~s~vq~k~LNrs~GPAVwg~---RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt 171 (679)
T KOG2311|consen 96 CDQSGVQYKVLNRSKGPAVWGL---RAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGT 171 (679)
T ss_pred hhhhhhhHHHhhccCCCcccCh---HHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCc
Confidence 1111122211 1112322 1246666666555555544433 66555 45555433 22 1 224556888
Q ss_pred EEEcCEEEEecCCC
Q 009027 247 ILSSHLIIDAMGNF 260 (546)
Q Consensus 247 ~i~ArlVV~ADG~~ 260 (546)
.+.|+-||--+|.+
T Consensus 172 ~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 172 VVYAESVILTTGTF 185 (679)
T ss_pred EeccceEEEeeccc
Confidence 99999999999976
No 223
>PRK06116 glutathione reductase; Validated
Probab=97.29 E-value=0.0027 Score=69.08 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=74.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.++++.+.+- . .
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~----------~------------ 205 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL---------------------R----------G------------ 205 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc---------------------c----------c------------
Confidence 59999965 69999999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
.+ ..+.+.+.+.+.+.|++++.++++.++..++++ +.|.+.+|+++.++.||.|.|....+.
T Consensus 206 -----------~~-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 206 -----------FD-PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred -----------cC-HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 00 012345556667789999999999999876665 778877888999999999999876543
No 224
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.28 E-value=0.00021 Score=72.94 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=27.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G-~rVlLlEr~~~ 143 (546)
||+||||+| .|+.+|..||+.| .+|+|||+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 899999965 5888899999997 79999999865
No 225
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.25 E-value=0.00027 Score=77.68 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcCC-----cEEEcCEEEEecCCC
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEG-----KILSSHLIIDAMGNF 260 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~g-----~~i~ArlVV~ADG~~ 260 (546)
.|-+.|.+.++++|++|+.+++|++|..+++.+ -|.+.++ +++.||.||-+.-..
T Consensus 233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 466778888888899999999999999887743 2333333 579999999887653
No 226
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.20 E-value=0.0044 Score=67.83 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=75.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.++++.+..-. .
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~- 215 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP------------------------------------------G- 215 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC------------------------------------------C-
Confidence 58999965 699999999999999999997642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
.+ ..+.+.+.+.+.+.|++++.+++++++..+++++.|.+.+|+++.++.||-|.|......
T Consensus 216 -----------~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 216 -----------ED-ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred -----------CC-HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 00 012344566667789999999999999877778888887888999999999999887653
No 227
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.19 E-value=0.0026 Score=68.92 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=67.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G--~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
.||||||| +|+++|..|++.| .+|+|||+.+......+ ++. .+ ..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~--------------~~~-----------~~-------~~ 49 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGAC--------------GLP-----------YF-------VG 49 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecC--------------CCc-----------eE-------ec
Confidence 58999965 6888999999874 58999998864321100 000 00 00
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc-CCcEEE--cCEEEEecCCCh
Q 009027 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILS--SHLIIDAMGNFS 261 (546)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-~g~~i~--ArlVV~ADG~~S 261 (546)
. .. -+...+.....+.+.+.|++++.+++|++++.++..+.+... +++++. +|.||-|+|...
T Consensus 50 ~--~~--------~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 50 G--FF--------DDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred c--cc--------CCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 0 00 001111111223345578999999999999877777766542 355666 999999999864
No 228
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.18 E-value=0.002 Score=67.92 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=35.3
Q ss_pred HHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 213 KRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 213 ~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
+.+.+.|++++.+ +|++++.++. +|.+++|++++.|.||-|.|...
T Consensus 62 ~~~~~~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 62 RLARQAGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHhcCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence 3444568998775 7888876655 56667788899999999999765
No 229
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.17 E-value=0.0047 Score=67.15 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=73.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+.+- . .
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------------------~---------------------~- 204 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL---------------------R---------------------G- 204 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC---------------------c---------------------c-
Confidence 48999965 68889999999999999999754210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v 263 (546)
++ ..+.+.+.+.+.+.|++++.+++++++..+++++.|++.+++++.++.||-|.|.....
T Consensus 205 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 205 -----------FD-DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 00 12233455666778999999999999987777788887778899999999999987654
No 230
>PLN02507 glutathione reductase
Probab=97.16 E-value=0.006 Score=67.45 Aligned_cols=98 Identities=16% Similarity=0.247 Sum_probs=74.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+++.+.+-. +
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-----------------~-------------------------- 241 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-----------------G-------------------------- 241 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-----------------c--------------------------
Confidence 58999965 688899999999999999997642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
++ ..+.+.+.+.+.+.|++++.+++++++..+++++.|.+.+|+++.++.||-|.|......
T Consensus 242 -----------~d-~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 242 -----------FD-DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 01 123344555667789999999999999877778888887788899999999999887653
No 231
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.11 E-value=0.032 Score=57.57 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=54.7
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChHH
Q 009027 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~v 263 (546)
..|++..+...|.+.+.+.|++++.+++|+++..+++++. |.+.+| +++|+.||.|.|..|.-
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 3589999999999999999999999999999998777664 565555 79999999999998864
No 232
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.10 E-value=0.0058 Score=66.62 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=73.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+.+-.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-------------------------------------------- 203 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-------------------------------------------- 203 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc--------------------------------------------
Confidence 59999976 699999999999999999997742110
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCC-cEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG-KILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g-~~i~ArlVV~ADG~~S~vr 264 (546)
. +| ..+.+.+.+.+.+.|++++.++.++++..++++ +.|+++++ +++.++.||-|.|......
T Consensus 204 ~----------~d-~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 204 S----------FD-SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred c----------cC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 0 01 123345566677789999999999999876554 66777777 5799999999999887653
No 233
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.09 E-value=0.0063 Score=66.55 Aligned_cols=98 Identities=23% Similarity=0.325 Sum_probs=72.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- + .
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------------------~---------------------~- 210 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL---------------------P---------------------N- 210 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------C---------------------c-
Confidence 68999976 69999999999999999999654100 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--~g--~~i~ArlVV~ADG~~S~vr 264 (546)
.| ..+.+.+.+.+.+.|++++.+++++++..+++.+.+.+. +| +++.++.||-|.|....+.
T Consensus 211 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 211 -----------ED-AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 00 122344556677789999999999999876666666554 55 3799999999999876653
No 234
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.07 E-value=0.00045 Score=76.13 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChHHHHHh
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQI 267 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~vr~ql 267 (546)
..+-+.|.+.+++.|++|+.+++|+++..+++. +.|.+++|++++|+.||.|.+....+.+.+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 346677888888899999999999999887765 467777888899999999888766555433
No 235
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.06 E-value=0.0079 Score=65.18 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=71.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- . ..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~~ 196 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL---------------------P---------------------RE 196 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC---------------------C---------------------CC
Confidence 59999975 69999999999999999999874210 0 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v 263 (546)
+ ..+.+.+.+.+++.|++++.+++++++..+++.+.+.. +++++.++.||-|.|.....
T Consensus 197 ------------~-~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 197 ------------E-PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred ------------C-HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 0 11223445566778999999999999987666666654 56789999999999987654
No 236
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.06 E-value=0.0011 Score=76.80 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=30.5
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK 144 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~ 144 (546)
..||+|||| ++|+++|..|+++|++|+|+|+...+
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 579999995 57999999999999999999986543
No 237
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.05 E-value=0.0051 Score=71.67 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=75.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| +|+-+|..|++.|.+|.|+|+.+.. + . .
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l---------------l------~---------~------------- 178 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL---------------M------A---------K------------- 178 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch---------------h------h---------h-------------
Confidence 58999976 6999999999999999999976420 0 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHHhc
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR 268 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql~ 268 (546)
. ++ ..+.+.+.+.+++.|++++.++.++++..++....|.+++|+++.+++||-|.|... .+.+.++
T Consensus 179 ~----------ld-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~g 247 (785)
T TIGR02374 179 Q----------LD-QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAG 247 (785)
T ss_pred h----------cC-HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcC
Confidence 0 00 112344556667789999999999988765545567788899999999999999764 3555554
Q ss_pred C
Q 009027 269 S 269 (546)
Q Consensus 269 ~ 269 (546)
+
T Consensus 248 l 248 (785)
T TIGR02374 248 I 248 (785)
T ss_pred C
Confidence 3
No 238
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.04 E-value=0.0039 Score=67.39 Aligned_cols=107 Identities=13% Similarity=0.079 Sum_probs=66.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
..+||||||| +|+.+|..|.+.+++|+|||+.+..-.. + .|-. +-.+.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~------~----~l~~----------------~~~g~----- 58 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFT------P----LLPQ----------------TTTGT----- 58 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchh------h----hHHH----------------hcccC-----
Confidence 5789999987 5777888888778999999987632110 0 0100 00000
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE--------cCCcEEEcCEEEEecCCC
Q 009027 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--------AEGKILSSHLIIDAMGNF 260 (546)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--------~~g~~i~ArlVV~ADG~~ 260 (546)
++...+..-+.+.+...+++++. .+|++|+.++..+++.. .++.++.+|.||-|.|..
T Consensus 59 -------------~~~~~~~~~~~~~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 59 -------------LEFRSICEPVRPALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred -------------CChHHhHHHHHHHhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc
Confidence 00111111233344445666654 58999988777777632 345689999999999987
Q ss_pred h
Q 009027 261 S 261 (546)
Q Consensus 261 S 261 (546)
.
T Consensus 125 ~ 125 (424)
T PTZ00318 125 P 125 (424)
T ss_pred c
Confidence 4
No 239
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.04 E-value=0.0079 Score=65.66 Aligned_cols=97 Identities=20% Similarity=0.340 Sum_probs=71.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| +|+-+|..|++.|.+|.|+|+.+.+- . .
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll---------------------~---------------------~- 208 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------------------P---------------------G- 208 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------c---------------------c-
Confidence 69999975 69999999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-~~i~ArlVV~ADG~~S~v 263 (546)
.+ ..+.+.+.+.+.+.|++++.+++++++..++..+.+...++ .++.+++||-|.|....+
T Consensus 209 -----------~d-~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 209 -----------ED-EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -----------cc-HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 00 12334455666778999999999999977666665554322 379999999999988765
No 240
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.00 E-value=0.0095 Score=65.24 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=71.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- . .
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il---------------------~---------------------~- 212 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC---------------------P---------------------G- 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC---------------------C---------------------C-
Confidence 58999965 69999999999999999999754210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc---C--CcEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---~--g~~i~ArlVV~ADG~~S~v 263 (546)
++ ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+. + ++++.++.||-|.|....+
T Consensus 213 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 213 -----------TD-TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred -----------CC-HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 01 112344566677789999999999999877677766553 2 3479999999999988654
No 241
>PRK06370 mercuric reductase; Validated
Probab=96.99 E-value=0.0098 Score=64.98 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=71.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... . .
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------------------~---------------------~- 209 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL---------------------P---------------------R- 209 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC---------------------c---------------------c-
Confidence 68999976 69999999999999999999765210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc--C-CcEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--E-GKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--~-g~~i~ArlVV~ADG~~S~v 263 (546)
.+ ..+.+.+.+.+.+.|++++.++++.++..+++++.|.+. + +.++.++.||-|.|.....
T Consensus 210 -----------~~-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 210 -----------ED-EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 00 112344556667789999999999999877766655542 3 4579999999999987654
No 242
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.99 E-value=0.0036 Score=66.95 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=67.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~--rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
.+||||||| +|+.+|..|+++|. +|+|+|+.+.....+. .++... + ... .
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-~l~~~~---~---------------~~~-----~--- 56 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-PLSKSM---L---------------LED-----S--- 56 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-CCCHHH---H---------------CCC-----C---
Confidence 479999975 68889999999887 7999998764432221 122110 0 000 0
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
.... ...+. +...+.|++++.++.|+.++.+.. .|.+++|+++.++.||-|+|...
T Consensus 57 -~~~~-------~~~~~--------~~~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 57 -PQLQ-------QVLPA--------NWWQENNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred -cccc-------ccCCH--------HHHHHCCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence 0000 00111 112346899999999988876543 45566788999999999999875
No 243
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.98 E-value=0.0039 Score=73.42 Aligned_cols=36 Identities=31% Similarity=0.346 Sum_probs=31.0
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
..+|+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG 575 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence 468999995 579999999999999999999886543
No 244
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.95 E-value=0.01 Score=65.05 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=73.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..- . .
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~- 221 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL---------------------A---------------------A- 221 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC---------------------C---------------------c-
Confidence 68999975 69999999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC--C--cEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~--g--~~i~ArlVV~ADG~~S~vr 264 (546)
.+ ..+.+.+.+++.+.|++++.+++++++..+++++.+.+.+ | .++.++.||-|.|......
T Consensus 222 -----------~d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 222 -----------AD-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred -----------CC-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 01 1233444556667899999999999998877777777654 3 4799999999999887643
No 245
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.95 E-value=0.0067 Score=64.43 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=56.1
Q ss_pred eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEcCEEEEecCCCh-----------HHHHHhc
Q 009027 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFS-----------PVVKQIR 268 (546)
Q Consensus 201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-~~i~ArlVV~ADG~~S-----------~vr~ql~ 268 (546)
.-......++|..++.+.|++++.+++|+++ +++++.|.+.++ ..++|+-||-|.|..| .+++++|
T Consensus 82 S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lG 159 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRG 159 (376)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCC
Confidence 3456778899999999999999999999998 444577776543 4799999999999876 6888887
Q ss_pred CCC
Q 009027 269 SGR 271 (546)
Q Consensus 269 ~~~ 271 (546)
...
T Consensus 160 h~i 162 (376)
T TIGR03862 160 VSV 162 (376)
T ss_pred Ccc
Confidence 653
No 246
>PRK07846 mycothione reductase; Reviewed
Probab=96.93 E-value=0.011 Score=64.37 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=71.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~ 189 (546)
-.|+||||| .|+-+|..|++.|.+|.|+|+.+..- ..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll---------------------~~--------------------- 204 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL---------------------RH--------------------- 204 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------------------cc---------------------
Confidence 369999975 69999999999999999999764210 00
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
.++ .+.+.+.+ ..+.|++++.+++++++..+++++.|++.+|+++.++.||.|.|......
T Consensus 205 ------------~d~-~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 205 ------------LDD-DISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred ------------cCH-HHHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 000 11122222 22457899999999999877777888887788999999999999887643
No 247
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.92 E-value=0.01 Score=64.54 Aligned_cols=98 Identities=17% Similarity=0.305 Sum_probs=75.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
-++||||| .|+=.|-.+++.|.+|+|||+....- + .
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL---------------------p---------------------~- 211 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL---------------------P---------------------G- 211 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC---------------------C---------------------c-
Confidence 39999976 69999999999999999999885210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~ArlVV~ADG~~S~vr 264 (546)
.| ..+.+.+.+.+++.|++++.+++++.+...++++.+++++|. +++|+.|+-|-|+.-.+-
T Consensus 212 -----------~D-~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 212 -----------ED-PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred -----------CC-HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 00 123455566666667899999999999888887888887765 799999999999875444
No 248
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.92 E-value=0.00099 Score=70.77 Aligned_cols=36 Identities=36% Similarity=0.541 Sum_probs=31.0
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
++||+||||| +|+++|..|++.|.+|+|+|+....+
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 3799999976 69999999999999999999876543
No 249
>PRK02106 choline dehydrogenase; Validated
Probab=96.92 E-value=0.00098 Score=74.68 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=30.5
Q ss_pred CcccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCC
Q 009027 109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNT 142 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~-~G~rVlLlEr~~ 142 (546)
..||+|||||| +|+.+|..||+ .|++|+|||+.+
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 36999999965 69999999999 899999999985
No 250
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.92 E-value=0.01 Score=65.68 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=73.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+++..... .
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------------------------------~------------ 219 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR--------------------------------G------------ 219 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc--------------------------------c------------
Confidence 69999976 69999999999999999998532100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
.| ..+.+.+.+.+++.|++++.++.+.++...++.+.|.+++|+++.++.||-|.|....+.
T Consensus 220 -----------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 220 -----------FD-RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred -----------CC-HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 00 012244555667789999999999988776666777777788899999999999887654
No 251
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.91 E-value=0.0042 Score=64.66 Aligned_cols=131 Identities=24% Similarity=0.240 Sum_probs=68.8
Q ss_pred CcccEEEEcchHHH-HHHHHHHhCCCeEEEEcCCC-CCCCcc-cccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027 109 GTFDVIVCGGTLGI-FIATALSFKGLRVAIVERNT-LKGREQ-EWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (546)
Q Consensus 109 ~~yDVIIVGGg~G~-~~Aa~LA~~G~rVlLlEr~~-~~~~~r-~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~ 185 (546)
.+|||+|||||+|+ .+|...|+.|++++.+|++. ..+.+- ..-|.-++ .|..-.+... +.. ..+....+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKA--LL~nSh~yh~--~q~---~~~~~rGi- 109 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKA--LLNNSHLYHE--AQH---EDFASRGI- 109 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHH--HhhhhHHHHH--Hhh---hHHHhcCc-
Confidence 37999999987755 56668889999999999854 444220 01122222 1222111100 000 00000000
Q ss_pred ccCCccccccccccceeCHHH-----------HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEcCE
Q 009027 186 FEGKGEIWVEDILNLGVSPAK-----------LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHL 252 (546)
Q Consensus 186 f~~~~~l~~~~~l~~~V~~~~-----------L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~Arl 252 (546)
.. ....+|... |..-+...+++.+++++.++- -..++..|.+.-.||. .+.|+-
T Consensus 110 -------~v---s~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g---sf~~p~~V~v~k~dg~~~ii~aKn 176 (506)
T KOG1335|consen 110 -------DV---SSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG---SFLDPNKVSVKKIDGEDQIIKAKN 176 (506)
T ss_pred -------cc---cceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE---eecCCceEEEeccCCCceEEeeee
Confidence 00 011122222 222333344555666665542 1245677777776664 899999
Q ss_pred EEEecCCC
Q 009027 253 IIDAMGNF 260 (546)
Q Consensus 253 VV~ADG~~ 260 (546)
+|.|+|..
T Consensus 177 IiiATGSe 184 (506)
T KOG1335|consen 177 IIIATGSE 184 (506)
T ss_pred EEEEeCCc
Confidence 99999964
No 252
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.91 E-value=0.0098 Score=64.16 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=72.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.++++.+..- . .
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~---------------------~----------------------~ 175 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL---------------------N----------------------K 175 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC---------------------c----------------------c
Confidence 69999976 69999999999999999999764210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHHhc
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR 268 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql~ 268 (546)
. .+ ..+.+.+.+.+.+.|++++.++++.++..++ .+ +.+.+|+++.++.||-|.|... .+.+.++
T Consensus 176 ~----------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g 242 (427)
T TIGR03385 176 L----------FD-EEMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIKPNSELAKDSG 242 (427)
T ss_pred c----------cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCccCCHHHHHhcC
Confidence 0 00 1223445566677899999999999986543 33 4556788999999999999864 3444444
Q ss_pred C
Q 009027 269 S 269 (546)
Q Consensus 269 ~ 269 (546)
.
T Consensus 243 l 243 (427)
T TIGR03385 243 L 243 (427)
T ss_pred c
Confidence 3
No 253
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.90 E-value=0.011 Score=64.59 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=71.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~ 189 (546)
-.|+||||| .|+-+|..|++.|.+|.|+|+.+.+- . .
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL---------------------P---------------------R 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC---------------------C---------------------c
Confidence 369999965 69999999999999999999764210 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---CcEEEcCEEEEecCCChHHH
Q 009027 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g~~i~ArlVV~ADG~~S~vr 264 (546)
.+ ..+...+.+.+.+.|++++.+++++++..+++.+.+++.+ ++++.++.||.|.|......
T Consensus 205 ------------~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 205 ------------EE-PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred ------------cC-HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 00 0122344556667899999999999998776666666532 35899999999999876543
No 254
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.90 E-value=0.0089 Score=70.09 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=75.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.++||||| +|+-+|..|++.|.+|.|+|+.+.. + . .
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l---------------l------~----------------------~ 183 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML---------------M------A----------------------E 183 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc---------------h------h----------------------h
Confidence 48999976 6999999999999999999976420 0 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC--eEEEEEcCCcEEEcCEEEEecCCChH--HHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP--VVKQ 266 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d--gv~V~~~~g~~i~ArlVV~ADG~~S~--vr~q 266 (546)
. +| ....+.+.+++.+.|++++.++.++++..+++ ...|.+++|+++.+++||-|.|.... +.+.
T Consensus 184 ~----------ld-~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~ 252 (847)
T PRK14989 184 Q----------LD-QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQ 252 (847)
T ss_pred h----------cC-HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhh
Confidence 0 00 11234556667788999999999999875432 34577788999999999999997754 4555
Q ss_pred hcC
Q 009027 267 IRS 269 (546)
Q Consensus 267 l~~ 269 (546)
.++
T Consensus 253 ~Gl 255 (847)
T PRK14989 253 CGL 255 (847)
T ss_pred cCc
Confidence 544
No 255
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.89 E-value=0.019 Score=62.23 Aligned_cols=103 Identities=13% Similarity=0.189 Sum_probs=71.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.++++.+.. | . .
T Consensus 151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~---------------l------~----------------------~ 187 (444)
T PRK09564 151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI---------------L------P----------------------D 187 (444)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc---------------C------c----------------------h
Confidence 69999976 6988999999999999999865410 0 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHHhc
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR 268 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql~ 268 (546)
. ++ ..+.+.+.+.+++.|++++.+++++++..++....+.+ ++.++.+++||-|.|... .+.+..+
T Consensus 188 ~----------~~-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~g 255 (444)
T PRK09564 188 S----------FD-KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPNTEFLEDTG 255 (444)
T ss_pred h----------cC-HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhcC
Confidence 0 00 12345566777788999999999999865433334444 445799999999999864 3445444
Q ss_pred C
Q 009027 269 S 269 (546)
Q Consensus 269 ~ 269 (546)
+
T Consensus 256 l 256 (444)
T PRK09564 256 L 256 (444)
T ss_pred c
Confidence 3
No 256
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.88 E-value=0.013 Score=64.23 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=69.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+.+- + .
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il---------------------~---------------------~- 218 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL---------------------P---------------------T- 218 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC---------------------C---------------------c-
Confidence 69999975 69999999999999999999875210 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-eCCeEEE-EEcCC--cEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVL-LLAEG--KILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V-~~~~g--~~i~ArlVV~ADG~~S~v 263 (546)
.+ ..+.+.+.+.+++.|++++.+++++++.. .++++.+ .+.+| +++.++.||.|.|....+
T Consensus 219 -----------~~-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 219 -----------ED-AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred -----------CC-HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 00 12334455566778999999999999875 2444443 34455 379999999999987654
No 257
>PLN02576 protoporphyrinogen oxidase
Probab=96.87 E-value=0.0012 Score=72.58 Aligned_cols=38 Identities=34% Similarity=0.422 Sum_probs=32.6
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCC
Q 009027 108 VGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKG 145 (546)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~~~~~ 145 (546)
..++||+||||| +|+++|..|+++ |++|+|+|+..-.+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 346899999977 599999999999 99999999886543
No 258
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.86 E-value=0.0019 Score=76.90 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.3
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
..+|+|||| ++|+++|..|+++|++|+|+|+...++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 479999995 679999999999999999999876543
No 259
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.85 E-value=0.027 Score=62.67 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CC--eEE--EEEc-CCc-----EEEcCEEEEecCCC
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-EN--AAV--LLLA-EGK-----ILSSHLIIDAMGNF 260 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~d--gv~--V~~~-~g~-----~i~ArlVV~ADG~~ 260 (546)
+.+..-|.+.+++.|++++.+++|+++..+ ++ +.+ |.+. +|+ ...+|+||.|.|..
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 346677888999999999999999999875 22 222 3332 222 46799999999954
No 260
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.82 E-value=0.017 Score=62.67 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=71.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+..- + .
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~- 196 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLFL---------------------P---------------------R- 196 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC---------------------C---------------------C-
Confidence 58999965 69999999999999999999753100 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v 263 (546)
.+ ..+.+.+.+.+.+.|++++.+++++++..+++.+.++.+++ ++.++.||-|.|.....
T Consensus 197 -----------~~-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 197 -----------ED-RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 00 12234456677788999999999999987777777776544 58999999999988754
No 261
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.82 E-value=0.0036 Score=68.33 Aligned_cols=35 Identities=31% Similarity=0.325 Sum_probs=30.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~ 144 (546)
..+|+||||| +|+++|..|+++|++|+|+|+.+.+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 4799999965 7999999999999999999988643
No 262
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.81 E-value=0.011 Score=62.42 Aligned_cols=103 Identities=21% Similarity=0.315 Sum_probs=76.5
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (546)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~ 189 (546)
-+|+|+|| .+|+.+|..|+++|++|+++|+...+... +
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~------------~----------------------------- 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ------------L----------------------------- 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh------------h-----------------------------
Confidence 58999996 57999999999999999999987642210 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE---EEEcCCcEEEcCEEEEecCCCh--HHH
Q 009027 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIIDAMGNFS--PVV 264 (546)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V~~~~g~~i~ArlVV~ADG~~S--~vr 264 (546)
. . ..+-+.+.+.+.+.|++++.++++.+++...+... +...++..+.+++++-+.|..- .++
T Consensus 176 ---~-----~-----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~ 242 (415)
T COG0446 176 ---L-----D-----PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLA 242 (415)
T ss_pred ---h-----h-----HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHH
Confidence 0 0 23345566667778999999999999987766543 4555788999999999999776 344
Q ss_pred HHh
Q 009027 265 KQI 267 (546)
Q Consensus 265 ~ql 267 (546)
+..
T Consensus 243 ~~~ 245 (415)
T COG0446 243 NDA 245 (415)
T ss_pred hhC
Confidence 443
No 263
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.78 E-value=0.0014 Score=72.81 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=31.5
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
|||||||+ ++|+++|..||++|++|++||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 79999995 679999999999999999999987654
No 264
>PRK14727 putative mercuric reductase; Provisional
Probab=96.78 E-value=0.015 Score=63.89 Aligned_cols=96 Identities=24% Similarity=0.239 Sum_probs=72.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+++..... .
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-------------------------------------------~- 225 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-------------------------------------------R- 225 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-------------------------------------------c-
Confidence 59999976 69999999999999999998642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
.+ ..+.+.+.+++.+.|++++.+++++++..+++.+.+...++ ++.++.||-|.|......
T Consensus 226 -----------~d-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 226 -----------ED-PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred -----------ch-HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 00 11234556666778999999999999987777777776554 699999999999987654
No 265
>PRK07208 hypothetical protein; Provisional
Probab=96.74 E-value=0.0015 Score=71.41 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE--EEEc--CCc--EEEcCEEEEecCCCh
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLA--EGK--ILSSHLIIDAMGNFS 261 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~~--~g~--~i~ArlVV~ADG~~S 261 (546)
.|-+.|.+.+.+.|++|+.+++|+++..++++++ +... +|+ ++.|+.||-|.-...
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~ 280 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRE 280 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHH
Confidence 3556777788888999999999999998887643 2222 343 699999998766543
No 266
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.71 E-value=0.017 Score=63.64 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
+.+.+.+.+++.|++++.++.++++..++++ ..|.+.+++++.++.||-|.|......
T Consensus 233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 233 LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 3455566677789999999999999866554 567776777899999999999886653
No 267
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.70 E-value=0.036 Score=59.22 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChH
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
+..+-+.+.+.+.|++++++|+|.++...++. ..|.+++|.++.||.||-|-|+.+.
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 45567888999999999999999999988875 3566778889999999999998764
No 268
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.68 E-value=0.002 Score=65.75 Aligned_cols=36 Identities=36% Similarity=0.517 Sum_probs=32.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
.||.+|||+| .|+.+|-.+++.|.+|+||||.+..+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 4899999977 59999999999999999999998766
No 269
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.68 E-value=0.019 Score=63.32 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=70.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+++....+ +
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------------~-------------------------- 217 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------------------G-------------------------- 217 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc------------------c--------------------------
Confidence 58999976 69999999999999999998532100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g---~~i~ArlVV~ADG~~S~v 263 (546)
.| ..+.+.+.+.+++.|++++.++.++++...++.+.|++.++ +++.++.||-|.|.....
T Consensus 218 -----------~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 218 -----------FD-QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred -----------cC-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 00 11223455666778999999999998877666777776554 379999999999987554
No 270
>PRK13748 putative mercuric reductase; Provisional
Probab=96.64 E-value=0.021 Score=63.95 Aligned_cols=95 Identities=23% Similarity=0.301 Sum_probs=70.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+++... | .. +
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~----------------l------~~-----------------~---- 308 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARSTL----------------F------FR-----------------E---- 308 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc----------------c------cc-----------------c----
Confidence 59999975 699999999999999999986421 0 00 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v 263 (546)
| ..+.+.+.+.+.+.|++++.+++++++..+++.+.+.+.++ ++.++.||-|.|.....
T Consensus 309 ------------d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 309 ------------D-PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred ------------C-HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 0 01223445566678999999999999987777777766544 69999999999987654
No 271
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.63 E-value=0.0058 Score=64.30 Aligned_cols=144 Identities=15% Similarity=0.214 Sum_probs=88.8
Q ss_pred CcccEEEEc-chHHHHHHHHHHhC-CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCC-Cccc
Q 009027 109 GTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCG 185 (546)
Q Consensus 109 ~~yDVIIVG-Gg~G~~~Aa~LA~~-G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~-~~v~ 185 (546)
..+|+|.|| ||.-+.+|+.|... +++++.+||.+..+.+.+.-+...+++.-..-.|.+ -.+| ...+
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVT----------l~~PTs~yS 73 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVT----------LVDPTSPYS 73 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhcc----------ccCCCCchH
Confidence 369999999 88899999999966 589999999997765544334333332211111111 1111 1112
Q ss_pred ccC----Ccccccc-ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-eCCe-EE--EEEcCCcEEEcCEEEEe
Q 009027 186 FEG----KGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENA-AV--LLLAEGKILSSHLIIDA 256 (546)
Q Consensus 186 f~~----~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dg-v~--V~~~~g~~i~ArlVV~A 256 (546)
|-+ ..+++.- +.-...+.|..+.+.|.-.|... -.++.+++|++|.. +.|. +. +.+.+++.++||=||-.
T Consensus 74 FLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg 152 (436)
T COG3486 74 FLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLG 152 (436)
T ss_pred HHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEc
Confidence 211 1122210 00124578999999988888766 58889999997742 2232 22 34456779999999999
Q ss_pred cCCChHH
Q 009027 257 MGNFSPV 263 (546)
Q Consensus 257 DG~~S~v 263 (546)
-|..-.|
T Consensus 153 ~G~~P~I 159 (436)
T COG3486 153 VGTQPYI 159 (436)
T ss_pred cCCCcCC
Confidence 9976433
No 272
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.62 E-value=0.0088 Score=69.77 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=35.9
Q ss_pred HhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 216 ~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
.+.|++++.+++|+.++.+. ..|.+.+|+++.+|.||-|+|...
T Consensus 65 ~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHCCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCc
Confidence 45789999999999887654 356667788999999999999764
No 273
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.61 E-value=0.015 Score=63.03 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=66.1
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
.||||||| +|+.+|..|++. +.+|+|+|+.+.....++ .+. .+. -+. +
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~-~lp-----~~~-~~~------------------~---- 53 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC-ALP-----YYI-GEV------------------V---- 53 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccC-Ccc-----hhh-cCc------------------c----
Confidence 59999976 588888888876 789999999865332211 000 000 000 0
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC-Cc--EEEcCEEEEecCCCh
Q 009027 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GK--ILSSHLIIDAMGNFS 261 (546)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-g~--~i~ArlVV~ADG~~S 261 (546)
... ... +.+.+.. ...+.|++++.+++|++++.++..+.+...+ ++ ++++|.||-|+|...
T Consensus 54 ~~~---~~~--~~~~~~~-------~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 54 EDR---KYA--LAYTPEK-------FYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred CCH---HHc--ccCCHHH-------HHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence 000 000 0011111 1134589999999999998877777666532 22 478999999999875
No 274
>PRK14694 putative mercuric reductase; Provisional
Probab=96.61 E-value=0.027 Score=61.64 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=70.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+++..... .
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------------~- 215 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-------------------------------------------Q- 215 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-------------------------------------------C-
Confidence 58999965 69999999999999999998532100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
.+ ..+.+.+.+.+.+.|++++.++++.++..+++.+.+.+.+ .++.++.||-|.|......
T Consensus 216 -----------~~-~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 216 -----------ED-PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred -----------CC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCcC
Confidence 00 1123445666677899999999999998766666666644 4799999999999887653
No 275
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.61 E-value=0.028 Score=61.26 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=69.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.++|+.+.+- ..
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll------------------~~------------------------- 207 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL------------------RH------------------------- 207 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc------------------cc-------------------------
Confidence 69999965 69999999999999999999764210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v 263 (546)
.++ .+.+.+.+ ..+.|++++.+++++++..+++++.|++.+|+++.++.||.|.|.....
T Consensus 208 -----------~d~-~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 208 -----------LDE-DISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred -----------cCH-HHHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 000 01112222 2235789999999999987777788887778889999999999987654
No 276
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.55 E-value=0.0024 Score=69.43 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=36.1
Q ss_pred CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (546)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~ 260 (546)
++|+.+++|++|..++++++|++++|++++||.||-|.-..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 57999999999999999999988788889999999987754
No 277
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.54 E-value=0.025 Score=62.00 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=70.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|||+.+..- ..
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il---------------------~~---------------------- 212 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI---------------------PA---------------------- 212 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC---------------------Cc----------------------
Confidence 69999975 69999999999999999999775210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC--C--cEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~--g--~~i~ArlVV~ADG~~S~vr 264 (546)
.| ..+.+.+.+.+.+. ++++.+++++++...++++.+++.+ + +++.++.||-|.|....+.
T Consensus 213 -----------~d-~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 213 -----------AD-KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -----------CC-HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 00 11223344455555 7899999999998777777776643 2 3699999999999987653
No 278
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.54 E-value=0.023 Score=60.26 Aligned_cols=105 Identities=10% Similarity=0.125 Sum_probs=64.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
.|||||||| +|+.+|..|.+. ..+|+||++.+.....+. .++. .+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~-~l~~-------------------~~~----------- 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP-DLSH-------------------VFS----------- 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC-cCcH-------------------HHh-----------
Confidence 489999976 577888888764 568999998764322111 0100 000
Q ss_pred CCccccccccccceeCHHHHHH-HHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 188 GKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~-~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
+ ..+...+.. ...+.+.+.|++++.+++|++++.+.. +|.+ ++.++.+|.||-|.|...
T Consensus 52 ~------------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 52 Q------------GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred C------------CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence 0 001111111 112334456899999999999876544 4444 566899999999999864
No 279
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.52 E-value=0.0026 Score=68.63 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEE-EcCC--cEEEcCEEEEecCCC
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL-LAEG--KILSSHLIIDAMGNF 260 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~-~~~g--~~i~ArlVV~ADG~~ 260 (546)
++.+.|.+++++.|++++.+++|+++..+++++.+. ..++ .+++|+.||-|.|..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 456778888888999999999999998877766543 3344 369999999999965
No 280
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.48 E-value=0.023 Score=61.67 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=71.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... ..
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~------------------~~------------------------- 186 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN------------------KL------------------------- 186 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc------------------hh-------------------------
Confidence 69999976 69999999999999999999764210 00
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH--HHHHhc
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR 268 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~--vr~ql~ 268 (546)
.+ ..+.+.+.+.+.+.|++++.+++++++.. + .|++++|+++.++.||-|.|.... ..+..+
T Consensus 187 -----------~d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~g 250 (438)
T PRK13512 187 -----------MD-ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSN 250 (438)
T ss_pred -----------cC-HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHHHHhcC
Confidence 00 12234455666778999999999998852 2 455667888999999999997653 444444
Q ss_pred C
Q 009027 269 S 269 (546)
Q Consensus 269 ~ 269 (546)
+
T Consensus 251 l 251 (438)
T PRK13512 251 I 251 (438)
T ss_pred c
Confidence 3
No 281
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.45 E-value=0.0026 Score=70.99 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=31.1
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
..+||+||||+| .|+++|..|+..|++|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 347999999955 79999999999999999999884
No 282
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0035 Score=64.12 Aligned_cols=33 Identities=42% Similarity=0.623 Sum_probs=30.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
+|||+||||| +|+++|++|+++|.++.+|-+++
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 6999999988 59999999999999999998775
No 283
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.39 E-value=0.015 Score=61.08 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=30.9
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
..+|+|||| .+|+.+|..|++.|++|+++|+.+.++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 358999996 479999999999999999999887543
No 284
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.37 E-value=0.0046 Score=66.37 Aligned_cols=63 Identities=29% Similarity=0.348 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCC--cEEEcCEEEEecCCC-hH-HHHHh
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG--KILSSHLIIDAMGNF-SP-VVKQI 267 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g--~~i~ArlVV~ADG~~-S~-vr~ql 267 (546)
.+|.+.|.+++++.|++++.+++|+++..+++.++ |.++++ .+++|+-+|-|.|.+ |. +.+++
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 35667788888888999999999999887777665 444454 379999999999998 75 55544
No 285
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.35 E-value=0.0041 Score=68.52 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=30.6
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~ 144 (546)
..+||||||| +|+++|..|...|++|+|+|.....
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 6899999976 5999999999999999999966544
No 286
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.34 E-value=0.035 Score=60.01 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
+.+.+.+.+.+.|++++.+++++++. ++. |.+++|+++.++++|-|.|...
T Consensus 230 ~~~~~~~~L~~~gV~v~~~~~v~~v~--~~~--v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 230 LRKYGQRRLRRLGVDIRTKTAVKEVL--DKE--VVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHCCCEEEeCCeEEEEe--CCE--EEECCCCEEEccEEEEccCCCC
Confidence 34555666778899999999998875 343 4567888999999999999643
No 287
>PLN02268 probable polyamine oxidase
Probab=96.26 E-value=0.0046 Score=66.80 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=36.1
Q ss_pred cCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEec
Q 009027 218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (546)
Q Consensus 218 ~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~AD 257 (546)
.+++|+.+++|+++..++++++|++.+|+++.||.||.|.
T Consensus 209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~ 248 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAV 248 (435)
T ss_pred ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEec
Confidence 3668999999999999999999998888889999999996
No 288
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.25 E-value=0.024 Score=66.47 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=66.3
Q ss_pred cEEEEcch-HHHHHHHHHHhC----CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027 112 DVIVCGGT-LGIFIATALSFK----GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~----G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f 186 (546)
.||||||| +|+.+|..|.++ +++|+||++.+.+...+. .++. + |
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~-~L~~------------------------~------~ 53 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV-HLSS------------------------Y------F 53 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC-cchH------------------------h------H
Confidence 69999965 688888888653 689999998876543321 1110 0 0
Q ss_pred cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
.+. . ...+.....+.+.+.|++++.+++|++++.+. .+|.+++|+++.+|.||-|+|...
T Consensus 54 ~~~-~------------~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 54 SHH-T------------AEELSLVREGFYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred cCC-C------------HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCc
Confidence 000 0 00000001122345689999999998886543 456667788999999999999864
No 289
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.25 E-value=0.011 Score=62.82 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=56.1
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
..+++..+...|.+.+.+ |++++++++|+++..+++.+.|++.+|..++|+.||.|.|.+|.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 357999999999999988 99999999999999888888888878877999999999999885
No 290
>PTZ00058 glutathione reductase; Provisional
Probab=96.24 E-value=0.051 Score=60.95 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=69.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+.. | .
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i---------------l------~----------------------- 274 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRL---------------L------R----------------------- 274 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc---------------c------c-----------------------
Confidence 58899976 5888999999999999999876410 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCC-cEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG-KILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g-~~i~ArlVV~ADG~~S~vr 264 (546)
.+| ..+.+.+.+.+++.|++++.++.+.++..+++ ++.+...++ +++.++.||-|.|....+.
T Consensus 275 ----------~~d-~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 275 ----------KFD-ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred ----------cCC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 001 12234455666778999999999999976544 466655444 5799999999999875543
No 291
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.24 E-value=0.0054 Score=72.49 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=31.4
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
.+||+|||| |+|+++|..|+++|++|+|+|+.+.++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence 579999995 579999999999999999999886543
No 292
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.20 E-value=0.005 Score=63.03 Aligned_cols=34 Identities=38% Similarity=0.499 Sum_probs=30.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~ 143 (546)
++||||||+| +|+.+|+.||.+|.+|+++|+...
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 6899999977 599999999999999999997654
No 293
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.20 E-value=0.0054 Score=68.01 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=33.0
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCC
Q 009027 107 AVGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK 144 (546)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~~~~ 144 (546)
....||.|||||| +|+.+|+.|++. -++|+|||+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3447999999975 799999999976 7899999998766
No 294
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.17 E-value=0.0052 Score=66.78 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-E-EEEEcCCc-----EEEcCEEEEecCCCh
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGK-----ILSSHLIIDAMGNFS 261 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v-~V~~~~g~-----~i~ArlVV~ADG~~S 261 (546)
+-+.|.+.+.+.|++|+.+++|++|..++++ + .|.+.+++ ++.||-||-|...+.
T Consensus 215 l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 215 LCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 3455666666779999999999999876555 3 35555554 799999999987643
No 295
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.12 E-value=0.024 Score=61.85 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=31.4
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
.+||+|||| ++|+++|..|+++|++|+|+|+...++
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~G 169 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPG 169 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 579999996 579999999999999999999986553
No 296
>PLN02676 polyamine oxidase
Probab=96.10 E-value=0.0067 Score=66.85 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=37.6
Q ss_pred CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (546)
Q Consensus 220 ~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~ 260 (546)
..|+.+++|++|..++++|+|++++|++++|+.||.|....
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~ 285 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLG 285 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChH
Confidence 57999999999999999999999999899999999999754
No 297
>PLN02785 Protein HOTHEAD
Probab=96.09 E-value=0.0059 Score=68.73 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=30.5
Q ss_pred CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~ 143 (546)
+..||+|||||| +|+.+|..|++ +.+|+|||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446999999965 69999999999 699999999874
No 298
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.08 E-value=0.005 Score=68.58 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=28.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL 143 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G-~rVlLlEr~~~ 143 (546)
|+|||||| +|+.+|..||+.| ++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 89999965 6999999999998 79999999863
No 299
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.04 E-value=0.0068 Score=64.89 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=31.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
-+|+||||| +|+++|+.||..|++|.|+||.+..+
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 469999976 69999999999999999999998765
No 300
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.0066 Score=65.80 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=31.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~ 146 (546)
-|+|+||| +|+++|..||.+|++|+|+|++...+.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 38999977 699999999999999999999988764
No 301
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.01 E-value=0.089 Score=57.32 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=68.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.++|+.+.... .
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~- 207 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP------------------------------------------L- 207 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------------------------------------------c-
Confidence 59999976 699999999999999999998742100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCC--cEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG--KILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g--~~i~ArlVV~ADG~~S~vr 264 (546)
.| ..+.+.+.+.+++. ++++.++++.++..+++ .++++..++ .++.++.||.|.|......
T Consensus 208 -----------~d-~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 208 -----------ED-PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred -----------hh-HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 00 12234445566667 89999999999976554 455544333 4799999999999865543
No 302
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.96 E-value=0.012 Score=67.19 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=31.4
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
..+|+|||| ++|+++|..|++.|++|+|+|+.+.++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 469999995 679999999999999999999987544
No 303
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.95 E-value=0.03 Score=56.47 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=43.1
Q ss_pred ceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEE-EEEc---C-CcEEEcCEEEEecCCChH
Q 009027 200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-LLLA---E-GKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~-V~~~---~-g~~i~ArlVV~ADG~~S~ 262 (546)
-+|++..|.+++.+.|.+.| ++++.+ +|.++..+..++. +-.+ + .....++.+|.++|-+++
T Consensus 142 aqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 142 AQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred ceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 35899999999999998876 587776 5666753333221 1111 1 336778899999998875
No 304
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.048 Score=53.19 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=77.2
Q ss_pred cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (546)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~ 188 (546)
.-.|+||| ||++-++|+.+|++-+|-+|+|-....+......+ .+..++| . |.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQL-------------tTTT~ve-----N-------fPG 62 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQL-------------TTTTDVE-----N-------FPG 62 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCcee-------------eeeeccc-----c-------CCC
Confidence 34799999 78899999999999999999995433221111000 0000111 0 111
Q ss_pred CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (546)
Q Consensus 189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~ 260 (546)
.|+ +|.-..|.+.+++++.+.|.+|+.+ .|.+++....-.+|.+ +.+.++|+-||-|.|+.
T Consensus 63 -----FPd----gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAs 123 (322)
T KOG0404|consen 63 -----FPD----GITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGAS 123 (322)
T ss_pred -----CCc----ccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccc
Confidence 111 2334567788888888899988765 5778888888888877 55679999999999975
No 305
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.90 E-value=0.019 Score=62.90 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=31.5
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
.++|+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 479999996 579999999999999999999987654
No 306
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.82 E-value=0.019 Score=62.89 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=31.3
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
..+|+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG 177 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 478999995 579999999999999999999987543
No 307
>PLN02546 glutathione reductase
Probab=95.78 E-value=0.11 Score=58.24 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=68.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... .
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il---------------------~----------------------- 289 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL---------------------R----------------------- 289 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc---------------------c-----------------------
Confidence 58888866 58888888888899999998653100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~ArlVV~ADG~~S~vr 264 (546)
.++ ..+...+.+.+.+.|++++.++++.++...++ .+.+.+.+++...++.||-|.|......
T Consensus 290 ----------~~d-~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 290 ----------GFD-EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred ----------ccC-HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 001 12334556666778999999999999876444 4556554454455899999999887653
No 308
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.72 E-value=0.01 Score=65.08 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeC--Ce---E-EEEEcCC---cEEEcCEEEEecCCC
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---A-VLLLAEG---KILSSHLIIDAMGNF 260 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dg---v-~V~~~~g---~~i~ArlVV~ADG~~ 260 (546)
+.+.|.+.+++.|++|+.+++|++|..++ ++ + .|.+.+| +++.||.||-|....
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 44556777788899999999999998764 22 2 2334433 469999999999876
No 309
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.71 E-value=0.013 Score=63.22 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-cCCcEEEcCEEEEec
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGKILSSHLIIDAM 257 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~~i~ArlVV~AD 257 (546)
.|-+.+...++-.|+....++.+.++..++++..+.+ .+|++++|+.||+..
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dp 285 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDP 285 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEG
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECC
Confidence 3445555555567999999999999998776655443 378899999999644
No 310
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.68 E-value=0.12 Score=53.63 Aligned_cols=134 Identities=21% Similarity=0.276 Sum_probs=71.6
Q ss_pred CCCcccEEEEcchHHHH-HHHHHHhCCCeEEEEcCC-CCCCCc---------ccccCCHHH--HHHHHHcCCCCcccchh
Q 009027 107 AVGTFDVIVCGGTLGIF-IATALSFKGLRVAIVERN-TLKGRE---------QEWNISRKE--LLELVESGILVEDDIDE 173 (546)
Q Consensus 107 ~~~~yDVIIVGGg~G~~-~Aa~LA~~G~rVlLlEr~-~~~~~~---------r~~~Is~~~--l~~L~~lGl~~~~~ie~ 173 (546)
.+.+||..|||||.|+. +|...|..|.+|.|+|-. ...+.+ --|+.+..+ ++.-.+-|+-..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~----- 91 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN----- 91 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc-----
Confidence 44589999999998555 555667889999999966 444421 125443221 111111121000
Q ss_pred hhhhccCCCcccccCCccccc-cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEc
Q 009027 174 ATATKFNPNRCGFEGKGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSS 250 (546)
Q Consensus 174 ~i~~~~~~~~v~f~~~~~l~~-~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~A 250 (546)
....|+ ...+.. .+. + | .+|...-...+..++++++++..- ..++..+.|+..|++ .++|
T Consensus 92 --------~~~~fd-W~~ik~krda--y-i--~RLngIY~~~L~k~~V~~i~G~a~---f~~~~~v~V~~~d~~~~~Yta 154 (478)
T KOG0405|consen 92 --------EEGSFD-WKVIKQKRDA--Y-I--LRLNGIYKRNLAKAAVKLIEGRAR---FVSPGEVEVEVNDGTKIVYTA 154 (478)
T ss_pred --------cccCCc-HHHHHhhhhH--H-H--HHHHHHHHhhccccceeEEeeeEE---EcCCCceEEEecCCeeEEEec
Confidence 000110 000000 000 0 0 123344444555567788777421 234667888887774 4899
Q ss_pred CEEEEecCCChH
Q 009027 251 HLIIDAMGNFSP 262 (546)
Q Consensus 251 rlVV~ADG~~S~ 262 (546)
+.+..|.|.+-.
T Consensus 155 k~iLIAtGg~p~ 166 (478)
T KOG0405|consen 155 KHILIATGGRPI 166 (478)
T ss_pred ceEEEEeCCccC
Confidence 999999997643
No 311
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.68 E-value=0.053 Score=58.49 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=34.0
Q ss_pred EEEeCceEEEEEEe--CCeEEEEEcCCcEEEcCEEEEecCCChHHHHH
Q 009027 221 VIFEGYSVSSICTY--ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (546)
Q Consensus 221 ~v~~~t~v~~i~~~--~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~q 266 (546)
.....++++++... ..+..+...+|....|+++|-|.|+.-+....
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence 34455667777666 55677888889999999999999987655543
No 312
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.63 E-value=0.019 Score=63.08 Aligned_cols=36 Identities=33% Similarity=0.426 Sum_probs=31.3
Q ss_pred cccEEEEcc-hHHHHHHHHHHh--CCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSF--KGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~--~G~rVlLlEr~~~~~ 145 (546)
...|+|||| |+|+.+|..|++ .|++|.|+|+.+.++
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 568999995 679999999987 799999999998775
No 313
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.61 E-value=0.14 Score=58.43 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=66.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+..-. +
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-----------------~-------------------------- 350 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-----------------L-------------------------- 350 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-----------------c--------------------------
Confidence 58999976 688899999999999999997642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHH-HhcCCEEEeCceEEEEEEeCCe--EEEEEcC-------C--------cEEEcCE
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENA--AVLLLAE-------G--------KILSSHL 252 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a-~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~-------g--------~~i~Arl 252 (546)
+|+ .+.+.+.+.+ .+.|++++.++.|.++..+++. +.|.+.+ + +++.++.
T Consensus 351 -----------~d~-eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~ 418 (659)
T PTZ00153 351 -----------LDA-DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS 418 (659)
T ss_pred -----------CCH-HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCE
Confidence 011 1222333332 3578999999999999766543 5555421 1 2799999
Q ss_pred EEEecCCChHH
Q 009027 253 IIDAMGNFSPV 263 (546)
Q Consensus 253 VV~ADG~~S~v 263 (546)
||-|.|..-.+
T Consensus 419 VlvAtGr~Pnt 429 (659)
T PTZ00153 419 CLVATGRKPNT 429 (659)
T ss_pred EEEEECcccCC
Confidence 99999987554
No 314
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=95.50 E-value=0.016 Score=67.07 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=31.9
Q ss_pred CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
...+|+||||| +|+++|..|+++|++|+|+|+...++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 36899999976 59999999999999999999876553
No 315
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.49 E-value=0.033 Score=63.67 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=31.4
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
..+|+|||| ++|+++|..|++.|++|+|+|+.+.++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G 229 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG 229 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 479999995 579999999999999999999987543
No 316
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.034 Score=57.09 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=59.9
Q ss_pred cEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCCC--ccccc----CCHHHH---HHHHHcCCCCcccch---hhhhhc
Q 009027 112 DVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGR--EQEWN----ISRKEL---LELVESGILVEDDID---EATATK 178 (546)
Q Consensus 112 DVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~~--~r~~~----Is~~~l---~~L~~lGl~~~~~ie---~~i~~~ 178 (546)
-|.|||||+ |+-+|+.+|++|++|.|.|-.+.... +..-+ ++-+++ ..-...|++.+ |+. ++|...
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~-EMR~lgSlii~~ 83 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKA-EMRLLGSLIIEA 83 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHH-HHHHhhhHHhhh
Confidence 588999885 88899999999999999996553321 11101 111111 11122233321 111 111111
Q ss_pred cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEE
Q 009027 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSI 231 (546)
Q Consensus 179 ~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i 231 (546)
...-.+|-.-.++|||+.|-+.+.++++++.. +|+ ..+|+.+
T Consensus 84 ----------Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vi-reEvt~i 126 (439)
T COG1206 84 ----------ADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVI-REEVTEI 126 (439)
T ss_pred ----------hhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEE-ccccccC
Confidence 00111223334789999999999999988865 444 3345554
No 317
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.46 E-value=0.025 Score=64.45 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=31.4
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
..+|+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 468999995 579999999999999999999988654
No 318
>PRK10262 thioredoxin reductase; Provisional
Probab=95.42 E-value=0.14 Score=52.93 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=63.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.++++.+.... .
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------~- 184 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------E- 184 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC------------------------------------------C-
Confidence 69999976 599999999999999999997642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcC------CcEEEcCEEEEecCCCh
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAE------GKILSSHLIIDAMGNFS 261 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~------g~~i~ArlVV~ADG~~S 261 (546)
..+.+.+.+++++.|++++.++.++++..+++++ .|++.+ .+++.++.||-|.|...
T Consensus 185 --------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 185 --------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred --------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 0112334555566788999999999987654332 233332 13799999998888653
No 319
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.018 Score=59.12 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=29.0
Q ss_pred CCcccEEEEcchH-HHHHHHHHHhCCCeEEEEcC
Q 009027 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVER 140 (546)
Q Consensus 108 ~~~yDVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr 140 (546)
+.+||.||+|||. |+++|-..|..|.+|+++|-
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 4589999999885 77888899999999999994
No 320
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.32 E-value=0.013 Score=62.34 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChHHHHHh
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVKQI 267 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~vr~ql 267 (546)
+-.++.+-++++|++|+.+.+|.+|..+++.++ |.++||++++++.||-=.+.+-..-+.+
T Consensus 266 vs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 266 VSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 334566678889999999999999988875443 7788999999999997666555444433
No 321
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.31 E-value=0.036 Score=62.24 Aligned_cols=36 Identities=33% Similarity=0.326 Sum_probs=30.9
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
.-+|+|||+ ++|+++|..|++.|++|+|+|+.+.++
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 357999995 679999999999999999999887554
No 322
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.28 E-value=0.078 Score=56.75 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc-EEEcCEEEEecCCC-hHHHHHh
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNF-SPVVKQI 267 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~-~i~ArlVV~ADG~~-S~vr~ql 267 (546)
.++.+...+.+++.|++++.++.|++++ ++++++. +|. +|.|+.+|=|.|.. |++.+.+
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~v~~~--~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVT--PDGVTLK--DGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEEC--CCcEEEc--cCCeeEecCEEEEcCCCcCChhhhhc
Confidence 3455666777888999999999999874 4555544 555 59999999999965 6677764
No 323
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.21 E-value=0.057 Score=55.26 Aligned_cols=111 Identities=23% Similarity=0.237 Sum_probs=63.0
Q ss_pred CCCcccEEEEcchH-HHHHHHHHHhC-CC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCc
Q 009027 107 AVGTFDVIVCGGTL-GIFIATALSFK-GL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR 183 (546)
Q Consensus 107 ~~~~yDVIIVGGg~-G~~~Aa~LA~~-G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~ 183 (546)
+..+|.|+|||||. |+.+|+.+.++ |- +|.+||....--....|.+..+.+..|..-+ ..
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~sr--------------r~--- 98 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSR--------------RK--- 98 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhcc--------------Cc---
Confidence 34589999999886 77888889865 43 7889985542112234544333332221110 00
Q ss_pred ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027 184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 184 v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v 263 (546)
...+ .|. . ..++.+++.+ .+++.-+|.+++|++|+.|++|.|+|..-..
T Consensus 99 -----~a~l-iP~--------~--a~wi~ekv~~---------------f~P~~N~v~t~gg~eIsYdylviA~Giql~y 147 (446)
T KOG3851|consen 99 -----QASL-IPK--------G--ATWIKEKVKE---------------FNPDKNTVVTRGGEEISYDYLVIAMGIQLDY 147 (446)
T ss_pred -----cccc-ccC--------C--cHHHHHHHHh---------------cCCCcCeEEccCCcEEeeeeEeeeeeceecc
Confidence 0000 010 0 1233344332 2345556777889999999999999987544
Q ss_pred HH
Q 009027 264 VK 265 (546)
Q Consensus 264 r~ 265 (546)
-+
T Consensus 148 ~~ 149 (446)
T KOG3851|consen 148 GK 149 (446)
T ss_pred ch
Confidence 33
No 324
>PLN02529 lysine-specific histone demethylase 1
Probab=95.21 E-value=0.024 Score=65.17 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=32.3
Q ss_pred CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEec
Q 009027 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (546)
Q Consensus 219 G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~AD 257 (546)
+..|+.+++|++|..++++|+|+. ++++++||.||.+-
T Consensus 366 ~L~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTV 403 (738)
T PLN02529 366 GVPIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTV 403 (738)
T ss_pred cCCEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECC
Confidence 457999999999999999999875 55689999999764
No 325
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.09 E-value=0.26 Score=55.52 Aligned_cols=59 Identities=10% Similarity=0.234 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-E---EE-EEcCCc--EEEcCEEEEecCCChHH
Q 009027 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (546)
Q Consensus 205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V-~~~~g~--~i~ArlVV~ADG~~S~v 263 (546)
..+...|.+++.+.|++++.++.++++..++++ | .+ ...+|+ .++|+-||-|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 467888888888889999999999999876443 2 22 223454 68999999999988753
No 326
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.07 E-value=0.03 Score=54.09 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=30.5
Q ss_pred cccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~ 145 (546)
..||||||+| +|+++|+..+++ .++|.+||..-.|+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 3699999965 799999999843 89999999888776
No 327
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.07 E-value=0.22 Score=50.22 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=61.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~ 189 (546)
-.|+|+||| .|.-+|..|++.|.+|.++++.+... . .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------~------------------------------------~ 179 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------A------------------------------------E 179 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC------c------------------------------------C
Confidence 379999975 58889999999999999998753100 0 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEc---CC--cEEEcCEEEEecCCCh
Q 009027 190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGNFS 261 (546)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~---~g--~~i~ArlVV~ADG~~S 261 (546)
..+.+.+.+. |++++.++.++++..++.-..+++. ++ .++.+++||-|.|...
T Consensus 180 -------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 180 -------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred -------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 0122334455 8899999999988765432234332 23 4799999999999654
No 328
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=94.98 E-value=0.043 Score=59.44 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhc
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~ 268 (546)
|.+.|.+++ .++++.+++|+.+..+..+..+.+.+|.++.++-||-+ +-...+.+.++
T Consensus 217 l~~al~~~l---~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t-~p~~~l~~ll~ 274 (444)
T COG1232 217 LIEALAEKL---EAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVIST-APLPELARLLG 274 (444)
T ss_pred HHHHHHHHh---hhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEc-CCHHHHHHHcC
Confidence 334444444 34599999999999987788887778888999999854 33434444443
No 329
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.90 E-value=0.23 Score=55.08 Aligned_cols=89 Identities=20% Similarity=0.184 Sum_probs=62.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
.|+||||| .|+-+|..|++.|.+|.|+|+.+... .
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~--------------------------------------------~ 389 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK--------------------------------------------A 389 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------h
Confidence 79999976 69999999999999999998553100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE-EEEcC---C--cEEEcCEEEEecCCCh
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGNFS 261 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~~---g--~~i~ArlVV~ADG~~S 261 (546)
...+.+.+.+ .|++++.++.++++..+++.+. |.+.+ + +++.++.||-|.|...
T Consensus 390 -----------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 390 -----------------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred -----------------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 0012233333 5899999999998876545543 55432 2 3789999999998653
No 330
>PLN02487 zeta-carotene desaturase
Probab=94.84 E-value=0.031 Score=62.70 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCEEEeCceEEEEEEeC--Ce----EEEEEc---CCcEEEcCEEEEecCCC
Q 009027 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA----AVLLLA---EGKILSSHLIIDAMGNF 260 (546)
Q Consensus 207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dg----v~V~~~---~g~~i~ArlVV~ADG~~ 260 (546)
|-+.+.+.+++.|++|+.+++|.++..+. ++ ..|++. +++.+.||.||-|.+..
T Consensus 297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 45566677788999999999999998873 33 234542 34479999999999977
No 331
>PRK13984 putative oxidoreductase; Provisional
Probab=94.82 E-value=0.068 Score=60.53 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=31.5
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
..+|+|||+ ++|+++|..|+++|++|+|+|+.+.++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 578999995 579999999999999999999987654
No 332
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=94.73 E-value=0.28 Score=50.46 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcC--CEEEeCceEEEEEEeCCeEE-EEE--cCCc--EEEcCEEEEecCCChH
Q 009027 207 LIEIVKKRFISLG--GVIFEGYSVSSICTYENAAV-LLL--AEGK--ILSSHLIIDAMGNFSP 262 (546)
Q Consensus 207 L~~~L~~~a~~~G--~~v~~~t~v~~i~~~~dgv~-V~~--~~g~--~i~ArlVV~ADG~~S~ 262 (546)
|...|.+.+.+.. +.|..+++|+++..+++.|. |+. .+|+ .+.++-||-|+|..+-
T Consensus 145 L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 145 LSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 4445555555544 48899999999997777654 333 2343 6889999999998874
No 333
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.68 E-value=0.15 Score=54.89 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=19.6
Q ss_pred CCcEEEeCCCCCCCCCCCCCcchhhH
Q 009027 387 FNRILQFGDASGIQSPVSFGGFGSLT 412 (546)
Q Consensus 387 ~~rvlLVGDAA~~v~Plsg~G~g~~l 412 (546)
.+|+..+|-.-+-.||+. +|=|.++
T Consensus 382 ~~Nl~a~G~vL~G~d~~~-~gcG~GV 406 (419)
T TIGR03378 382 IENLYAIGAVLGGYDPIF-EGCGSGV 406 (419)
T ss_pred cccceEechhhcCCChHh-cCCCchh
Confidence 689999999999999985 5555443
No 334
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.64 E-value=0.04 Score=64.65 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=28.9
Q ss_pred cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCC
Q 009027 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (546)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~ 141 (546)
...|+||| ||+|+++|..|+++|++|+|+|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 46899999 567999999999999999999985
No 335
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.44 E-value=0.18 Score=53.99 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=61.5
Q ss_pred ccEEEEcchH-HHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027 111 FDVIVCGGTL-GIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (546)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~ 187 (546)
.-|||+|||- |+.+|..|+++ +.+|+||||+..--.+ . .|- ++.. +.
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~-------p---lL~-----------eva~-----g~---- 53 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT-------P---LLY-----------EVAT-----GT---- 53 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc-------h---hhh-----------hhhc-----CC----
Confidence 4699999985 77788899987 4899999998642110 0 010 0000 00
Q ss_pred CCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (546)
Q Consensus 188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S 261 (546)
++...+..-+.+.++..+ +++. ..+|++|+.++.. |.++++..+..|.+|-|.|..+
T Consensus 54 --------------l~~~~i~~p~~~~~~~~~~v~~~-~~~V~~ID~~~k~--V~~~~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 54 --------------LSESEIAIPLRALLRKSGNVQFV-QGEVTDIDRDAKK--VTLADLGEISYDYLVVALGSET 111 (405)
T ss_pred --------------CChhheeccHHHHhcccCceEEE-EEEEEEEcccCCE--EEeCCCccccccEEEEecCCcC
Confidence 011111111222333334 4554 4578888776655 4555667899999999999875
No 336
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.43 E-value=0.2 Score=55.53 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=56.6
Q ss_pred ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEcCEEEEecCCChH-HHHHhcC
Q 009027 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIRS 269 (546)
Q Consensus 200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---~g--~~i~ArlVV~ADG~~S~-vr~ql~~ 269 (546)
..+|+.++...+.+.|.+.|++++..++|+++..+++.+. |++. +| .+|+|+.||-|.|.+|. +.+.++.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL 199 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence 3689999999999999999999999999999988777643 4442 24 27999999999999987 5555543
No 337
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.37 E-value=0.33 Score=52.36 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=72.8
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 009027 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (546)
Q Consensus 113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~~ 191 (546)
|+++||| +|+-+|+.|...+.+|+++++.+.+- ..
T Consensus 216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~---------------~~----------------------------- 251 (478)
T KOG1336|consen 216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL---------------PR----------------------------- 251 (478)
T ss_pred EEEECchHHHHHHHHHHHhcCceEEEEccCccch---------------hh-----------------------------
Confidence 8999987 69999999998899999998664211 00
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEcCEEEEecCCChH
Q 009027 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
+.. ..+.+...+..++.|++++.++.+.++..++++ ..|.+.+++++.|++||-.-|+.+.
T Consensus 252 lf~----------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 252 LFG----------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred hhh----------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 000 123344555667789999999999999887754 4577778999999999999998754
No 338
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.36 E-value=0.061 Score=58.68 Aligned_cols=54 Identities=35% Similarity=0.383 Sum_probs=43.5
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCc---------ccccCCHHHHHHHHHcC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESG 164 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~---------r~~~Is~~~l~~L~~lG 164 (546)
-.|.||| ||+|+++|..|++.|+.|+++|+.+.++.- -.-.|....++.|...|
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G 187 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG 187 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC
Confidence 5799999 578999999999999999999999876521 11246667888888888
No 339
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.83 E-value=0.084 Score=58.17 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=30.6
Q ss_pred cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK 144 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~ 144 (546)
..+|+|||| ++|+++|..|+++|++|+|+|+.+.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 369999996 57999999999999999999988754
No 340
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.79 E-value=0.63 Score=48.90 Aligned_cols=51 Identities=27% Similarity=0.379 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027 208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (546)
Q Consensus 208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~ 262 (546)
...+.+.+.+.|++++.++++.++. ++ .|.+++|.++.+++||-|.|...+
T Consensus 194 ~~~~~~~l~~~gV~v~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 194 RRLVLRLLARRGIEVHEGAPVTRGP--DG--ALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHCCCEEEeCCeeEEEc--CC--eEEeCCCCEEecCEEEEccCCChh
Confidence 3455666777899999999998874 33 456667889999999999997653
No 341
>PLN02976 amine oxidase
Probab=93.78 E-value=0.077 Score=64.36 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=32.1
Q ss_pred CCCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (546)
Q Consensus 107 ~~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~ 144 (546)
.+..+||+||||| +|+++|+.|+++|++|+|+|+...+
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 4446899999965 6999999999999999999987654
No 342
>PLN03000 amine oxidase
Probab=93.67 E-value=0.077 Score=61.82 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=31.3
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
..||+||||| .|+.+|..|++.|++|+|+|++..++
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 5899999976 59999999999999999999876553
No 343
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.41 E-value=0.8 Score=49.94 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=27.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|+||||| .|+-+|..|++.|.+|.++++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999977 69999999999999999998764
No 344
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.29 E-value=0.77 Score=50.08 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=26.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
.|+||||| .|.-+|..|++.|. +|.++++..
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999976 69999999999998 899998753
No 345
>PTZ00188 adrenodoxin reductase; Provisional
Probab=93.19 E-value=0.13 Score=56.41 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=29.9
Q ss_pred cccEEEEcc-hHHHHHHHHHH-hCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGG-TLGIFIATALS-FKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGG-g~G~~~Aa~LA-~~G~rVlLlEr~~~~~ 145 (546)
..-|+|||| |+|+.+|..|+ +.|++|.|+||.+.|+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 356999995 67888888664 7799999999998876
No 346
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.07 E-value=0.73 Score=50.54 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=24.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
.|+||||| .|+-+|..+.+.|. +|.+++...
T Consensus 283 ~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 283 HVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 59999976 69989888888886 688666544
No 347
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=92.97 E-value=0.8 Score=49.57 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=24.5
Q ss_pred cccEEEEcchHHHHHH-HHHH----hCCCeEEEEcCCCC
Q 009027 110 TFDVIVCGGTLGIFIA-TALS----FKGLRVAIVERNTL 143 (546)
Q Consensus 110 ~yDVIIVGGg~G~~~A-a~LA----~~G~rVlLlEr~~~ 143 (546)
+.|.|+.+|-+|+-.| ..++ +.|.+|.++|..+.
T Consensus 216 ~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp 254 (422)
T PRK05329 216 DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP 254 (422)
T ss_pred CCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC
Confidence 4687777776777666 3333 56999999997764
No 348
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=92.90 E-value=0.22 Score=56.38 Aligned_cols=104 Identities=19% Similarity=0.317 Sum_probs=73.9
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 009027 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (546)
Q Consensus 113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~~ 191 (546)
.+||||| +|+=+|..|...|.+|.|++=.+. |- +. .
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~----------------lM----------er-----------------Q 184 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT----------------LM----------ER-----------------Q 184 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecch----------------HH----------HH-----------------h
Confidence 4778877 599999999999999999973321 10 00 0
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC--hHHHHHhcC
Q 009027 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF--SPVVKQIRS 269 (546)
Q Consensus 192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~--S~vr~ql~~ 269 (546)
+|+ .=..+|..++.+.|.+++.+...+.+...+.-..|.++||..+.|++||-|+|.+ .-++++.++
T Consensus 185 ----------LD~-~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGl 253 (793)
T COG1251 185 ----------LDR-TAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGL 253 (793)
T ss_pred ----------hhh-HHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCc
Confidence 000 0124566666778999998888887766444556888999999999999999975 446777665
Q ss_pred C
Q 009027 270 G 270 (546)
Q Consensus 270 ~ 270 (546)
.
T Consensus 254 a 254 (793)
T COG1251 254 A 254 (793)
T ss_pred C
Confidence 4
No 349
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.65 E-value=0.97 Score=50.23 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=61.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
+|+||||| .|.-+|..|+..|.+|.|+++.+.... .
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------------------------------------~- 389 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------------------------------------D- 389 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------------------------------------------c-
Confidence 79999976 699999999999999999986642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEcCEEEEecCCCh
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFS 261 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~---~g--~~i~ArlVV~ADG~~S 261 (546)
..+.+++.+ .|++++.++.++++..+++.++ |++. ++ +++.++.|+-|.|...
T Consensus 390 ------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 390 ------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred ------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 011222222 4889999999999876645443 4443 23 3689999999988653
No 350
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=92.61 E-value=0.46 Score=49.96 Aligned_cols=129 Identities=19% Similarity=0.080 Sum_probs=68.4
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCc------ccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGRE------QEWNISRKELLELVESGILVEDDIDEATATKFN 180 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~--rVlLlEr~~~~~~~------r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~ 180 (546)
...|+||||| .++-++..|.+++- +|.++=|.+..... .+ -.+++-++.+..+.- +....+..+.
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne-~f~P~~v~~f~~l~~----~~R~~~l~~~- 263 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNE-IFSPEYVDYFYSLPD----EERRELLREQ- 263 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHG-GGSHHHHHHHHTS-H----HHHHHHHHHT-
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhh-hcCchhhhhhhcCCH----HHHHHHHHHh-
Confidence 5689999987 58888888887764 89999887643211 01 134444433332211 0000000000
Q ss_pred CCcccccCCcccccccccc-ceeCHHHHHH---HHHH-HHHh-cCCEEEeCceEEEEEEeCC-eEEEEEcC---C--cEE
Q 009027 181 PNRCGFEGKGEIWVEDILN-LGVSPAKLIE---IVKK-RFIS-LGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KIL 248 (546)
Q Consensus 181 ~~~v~f~~~~~l~~~~~l~-~~V~~~~L~~---~L~~-~a~~-~G~~v~~~t~v~~i~~~~d-gv~V~~~~---g--~~i 248 (546)
..++ -+|+++.+.+ .+.+ ++.. ....++.+++|+++...++ ++.+++.+ + .++
T Consensus 264 ---------------~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~ 328 (341)
T PF13434_consen 264 ---------------RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETL 328 (341)
T ss_dssp ---------------GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEE
T ss_pred ---------------HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEE
Confidence 0011 2355554432 2222 2322 2369999999999999885 89888864 2 389
Q ss_pred EcCEEEEecCC
Q 009027 249 SSHLIIDAMGN 259 (546)
Q Consensus 249 ~ArlVV~ADG~ 259 (546)
.+|.||.|+|.
T Consensus 329 ~~D~VilATGy 339 (341)
T PF13434_consen 329 EVDAVILATGY 339 (341)
T ss_dssp EESEEEE---E
T ss_pred ecCEEEEcCCc
Confidence 99999999995
No 351
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=91.89 E-value=1.8 Score=45.20 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=32.2
Q ss_pred CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (546)
Q Consensus 219 G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~ 259 (546)
+..|..++.|..+..-+|++.|...+|++-+-|-||-|.=.
T Consensus 231 ~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~ 271 (447)
T COG2907 231 RGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHP 271 (447)
T ss_pred cceeecCCceeeeeeCCCceEEecCCCCccccceeeeecCh
Confidence 34688999999999999999998877876666666666543
No 352
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.88 E-value=1.3 Score=46.60 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=26.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~r-VlLlEr~~ 142 (546)
.|+|+||| .|+-+|..|++.|.+ |.|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 59999965 699999999999997 99998754
No 353
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=0.23 Score=51.94 Aligned_cols=36 Identities=33% Similarity=0.597 Sum_probs=32.2
Q ss_pred cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
.|||||.| |-.=+..+++|+..|.+|++|||+..-+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 79999999 5569999999999999999999998754
No 354
>PRK12831 putative oxidoreductase; Provisional
Probab=91.82 E-value=1.7 Score=47.57 Aligned_cols=31 Identities=32% Similarity=0.344 Sum_probs=27.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|+||||| .|+-+|..|++.|.+|.|+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 79999977 69999999999999999998754
No 355
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=91.60 E-value=0.17 Score=53.76 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=28.1
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCeEE--EEcCCCC
Q 009027 110 TFDVIVCGGTL-GIFIATALSFKGLRVA--IVERNTL 143 (546)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LA~~G~rVl--LlEr~~~ 143 (546)
.-+|+|||||+ |+++|+.|++++-+|. |+|..+-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R 47 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR 47 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence 46899999875 9999999999988875 4897653
No 356
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.52 E-value=1.1 Score=53.84 Aligned_cols=95 Identities=18% Similarity=0.147 Sum_probs=64.9
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027 112 DVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (546)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LA~~G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~ 189 (546)
.|+|+|| ..|+-+|..|++.|. .|+|+|..+.. .
T Consensus 319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------~------------------------------------ 354 (985)
T TIGR01372 319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------S------------------------------------ 354 (985)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------h------------------------------------
Confidence 6899996 469999999999995 57888754310 0
Q ss_pred ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc----CCcEEEcCEEEEecCCChH--H
Q 009027 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMGNFSP--V 263 (546)
Q Consensus 190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~----~g~~i~ArlVV~ADG~~S~--v 263 (546)
..+.+++++.|++++.++.++.+..++....|++. +++++.|+.|+-+.|.... +
T Consensus 355 -------------------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L 415 (985)
T TIGR01372 355 -------------------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL 415 (985)
T ss_pred -------------------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence 00234456678999999999888654332223332 3458999999999997654 5
Q ss_pred HHHhcC
Q 009027 264 VKQIRS 269 (546)
Q Consensus 264 r~ql~~ 269 (546)
.++++.
T Consensus 416 ~~~lg~ 421 (985)
T TIGR01372 416 FSQRGG 421 (985)
T ss_pred HHhcCC
Confidence 666654
No 357
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.48 E-value=0.28 Score=44.70 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=26.8
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|+|+|+ .+|+..|+.|++.|++|.++.|.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 689995 579999999999999999998764
No 358
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.46 E-value=0.23 Score=52.46 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=32.9
Q ss_pred CcccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (546)
Q Consensus 109 ~~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~ 146 (546)
..||||||| |-+=+.+|++.+|.|.+|+-+|++++-+.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 379999999 54688889999999999999999998653
No 359
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=91.45 E-value=0.73 Score=50.80 Aligned_cols=35 Identities=40% Similarity=0.729 Sum_probs=31.7
Q ss_pred ccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
|||||||||+ |+++|+.||++|++|+|+||+..++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 7999999875 8889999999999999999998765
No 360
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=90.99 E-value=0.5 Score=48.30 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=26.9
Q ss_pred EEEEcc-h-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG-T-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG-g-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|+|.|| | +|+-++..|.++|++|+|+|...
T Consensus 3 iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~ 34 (329)
T COG1087 3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLS 34 (329)
T ss_pred EEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Confidence 789996 7 79999999999999999999554
No 361
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.94 E-value=0.29 Score=45.40 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=26.7
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|.|+||| .|.++|..|+++|++|.|..+.+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 7899977 58899999999999999998764
No 362
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=90.84 E-value=1 Score=49.59 Aligned_cols=33 Identities=30% Similarity=0.559 Sum_probs=29.6
Q ss_pred EEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 113 VIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 113 VIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
|||||||+ |+++|+.||++|++|+|+|++..++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence 68999775 8889999999999999999998765
No 363
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=90.68 E-value=21 Score=38.60 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=41.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhC----CCeEEEEcCCCCCCC-c------c-------cc--cCCHHHHHHHHHcCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFK----GLRVAIVERNTLKGR-E------Q-------EW--NISRKELLELVESGIL 166 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~----G~rVlLlEr~~~~~~-~------r-------~~--~Is~~~l~~L~~lGl~ 166 (546)
+.||+||||| +|+++|..|+++ |++|+|+|+..-.+. . . .| .-.++.++.+.++|+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~ 79 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLE 79 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCC
Confidence 4799999976 599999999998 999999998875431 0 0 01 1224467788888874
No 364
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.57 E-value=0.32 Score=46.25 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=25.5
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|.|+|+| +|...|..+|++|++|.++|+.+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 7899955 79999999999999999999864
No 365
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.60 E-value=0.42 Score=52.10 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=29.4
Q ss_pred EEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
|.|+| |+.|.++|..|+++|++|.+.|+...++
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~ 36 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE 36 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 78999 7789999999999999999999887654
No 366
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.31 E-value=0.51 Score=45.72 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=28.7
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
..|+|+| ||+|+..|..|++.|+ ++.|+|...
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5699999 7899999999999999 699999774
No 367
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=88.95 E-value=2.5 Score=44.76 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=69.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
-.+|+||| +|+-++..-.+.|-+|+++|-...... .
T Consensus 213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~------------------~------------------------- 249 (506)
T KOG1335|consen 213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG------------------V------------------------- 249 (506)
T ss_pred eEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc------------------c-------------------------
Confidence 47788866 699999999999999999984332110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcC---C--cEEEcCEEEEecCCChHHH
Q 009027 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KILSSHLIIDAMGNFSPVV 264 (546)
Q Consensus 191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~---g--~~i~ArlVV~ADG~~S~vr 264 (546)
+|++ +-.....-+...|.++..+|+|+.+..+.| .+.|++.+ + ++++||++..|-|++ |.-
T Consensus 250 -----------mD~E-isk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr-P~t 316 (506)
T KOG1335|consen 250 -----------MDGE-ISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR-PFT 316 (506)
T ss_pred -----------cCHH-HHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc-ccc
Confidence 1111 111222223346899999999999999888 56666653 3 389999999999987 555
Q ss_pred HHhcC
Q 009027 265 KQIRS 269 (546)
Q Consensus 265 ~ql~~ 269 (546)
+.|++
T Consensus 317 ~GLgl 321 (506)
T KOG1335|consen 317 EGLGL 321 (506)
T ss_pred cCCCh
Confidence 55543
No 368
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=88.77 E-value=0.75 Score=45.58 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=37.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESG 164 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lG 164 (546)
.-|+||| ||+|+.++-+|||.|+ +..|||.....- .|+.+..-..+...|
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v----TN~NRQi~A~~~~iG 82 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV----TNTNRQIHALLGDIG 82 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc----cccchhhHhhhhhcc
Confidence 4599999 9999999999999999 788999876532 245554444444444
No 369
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=88.41 E-value=3.6 Score=48.01 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=26.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~r-VlLlEr~~ 142 (546)
.|+||||| .|+-+|..+.+.|.+ |.|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999976 588899999999997 99998764
No 370
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.37 E-value=0.61 Score=45.18 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=29.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+|+| ||+|+.+|..|++.|. ++.|+|....
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 5699999 7899999999999998 8999997753
No 371
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.01 E-value=0.57 Score=48.37 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=28.0
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|.|+| |++|+..|+.|++.|.+|.++.|..
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 599999 5679999999999999999999863
No 372
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=87.95 E-value=0.25 Score=52.11 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=32.0
Q ss_pred cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
.|||||.| |..=+.+++.|+..|-+|+.+||++.-+
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYG 40 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCC
Confidence 49999999 6678999999999999999999997643
No 373
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=87.94 E-value=0.57 Score=49.71 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=57.1
Q ss_pred eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC--ChHHHHHhc
Q 009027 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN--FSPVVKQIR 268 (546)
Q Consensus 202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~--~S~vr~ql~ 268 (546)
|-++.|-++-.++.++.|++|+.+..|.++......+++.++||.+++.++||.|.|- ||-++..-+
T Consensus 390 iLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 390 ILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred hhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccc
Confidence 3456677788888888999999999999999999999999999999999999999994 566765433
No 374
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=87.91 E-value=0.46 Score=48.18 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=25.2
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 009027 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~ 143 (546)
++|+| ||+|=++ |..||++|.||+|||-.+.
T Consensus 4 i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 4 FCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence 56779 8887664 7788999999999997664
No 375
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=87.52 E-value=0.85 Score=49.63 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=29.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~ 143 (546)
-+|+||||| .|+-+|..|++.|.+|.|+|+.+.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 479999975 699999999999999999998764
No 376
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.03 E-value=1 Score=40.79 Aligned_cols=31 Identities=32% Similarity=0.629 Sum_probs=27.7
Q ss_pred EEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
|+|+| |++|+.+|..|++.|+ ++.++|....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 78999 7899999999999999 6999997753
No 377
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=86.92 E-value=5.6 Score=45.62 Aligned_cols=31 Identities=35% Similarity=0.359 Sum_probs=25.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
.|+||||| .|.-+|..+.+.|. +|.|+++..
T Consensus 325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999976 58889999999987 599998664
No 378
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.86 E-value=0.81 Score=48.05 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=29.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+||| ||+|+.+|..|++.|+ ++.|+|+...
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4599999 7899999999999999 8899998764
No 379
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.74 E-value=0.68 Score=44.28 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=23.9
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|.|+|-| +|+.+|+.||++|++|+.+|..+
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899955 89999999999999999999664
No 380
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.73 E-value=0.82 Score=48.03 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=29.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
.-|+||| ||+|+.+|..|++.|+ ++.|+|...
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4699999 7899999999999999 999999864
No 381
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.61 E-value=0.96 Score=46.78 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=28.3
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-.|.|+| |.+|++.|..|+++|++|.++.|..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4699999 5579999999999999999999864
No 382
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.51 E-value=0.77 Score=47.39 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=28.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|.|+|+| .|..+|..|+++|++|.++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 59999965 69999999999999999999875
No 383
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=86.48 E-value=1.3 Score=46.26 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027 210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (546)
Q Consensus 210 ~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~ 260 (546)
.+...+...|.+|+.+++|++|..+++++.|.+.+|++++||.||.|....
T Consensus 214 ~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 214 ALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS 264 (450)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred HHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence 333344445779999999999999999999999999999999999887654
No 384
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.20 E-value=1.9 Score=47.64 Aligned_cols=36 Identities=39% Similarity=0.672 Sum_probs=33.1
Q ss_pred cccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 110 ~yDVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
.|||||||||. |+++|+.||++|++|+|+||+..++
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 69999999875 8899999999999999999998775
No 385
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=86.08 E-value=0.63 Score=47.08 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=25.0
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 009027 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK 144 (546)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~~ 144 (546)
+.|+| ||+|-++ |+.||++|.||+|||-.+..
T Consensus 4 iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~ 41 (273)
T PRK13232 4 IAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKA 41 (273)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccc
Confidence 44558 8887765 77889999999999976643
No 386
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=86.02 E-value=1.9 Score=44.12 Aligned_cols=110 Identities=15% Similarity=0.279 Sum_probs=61.7
Q ss_pred EEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027 113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (546)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~ 190 (546)
||||| ||+|+-.+-.|+|.|. |..++|-.+..-. .+.+.+...|.+.|.-...-+...+ +++ ..+++.+...
T Consensus 77 VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSls----SLNrHs~Atl~DVG~PK~~clkkh~-ski-aPw~eIdar~ 150 (430)
T KOG2018|consen 77 VVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLS----SLNRHSCATLADVGTPKVMCLKKHF-SKI-APWCEIDARN 150 (430)
T ss_pred EEEEecCchhHHHHHHHHHhcCceEEEechhhccHh----hhhhhhhhhHhhcCCchHHHHHHHH-Hhh-CccceecHHH
Confidence 88889 7899999999999998 6778875442111 2556677788888853211111111 111 1222222211
Q ss_pred cccccc--------cccce---eCHHHHHHHHHHHHHhcCCEEEeCceE
Q 009027 191 EIWVED--------ILNLG---VSPAKLIEIVKKRFISLGGVIFEGYSV 228 (546)
Q Consensus 191 ~l~~~~--------~l~~~---V~~~~L~~~L~~~a~~~G~~v~~~t~v 228 (546)
.+|.+. ...+. +|+-...--|++.|..+|..++..+.+
T Consensus 151 ~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Ga 199 (430)
T KOG2018|consen 151 MLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGA 199 (430)
T ss_pred hhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCc
Confidence 111110 01233 455555556788888889888766544
No 387
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.72 E-value=1.1 Score=42.39 Aligned_cols=31 Identities=32% Similarity=0.495 Sum_probs=27.6
Q ss_pred EEEEc-chHHHHHHHHHHhCCCe-EEEEcCCCC
Q 009027 113 VIVCG-GTLGIFIATALSFKGLR-VAIVERNTL 143 (546)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LA~~G~r-VlLlEr~~~ 143 (546)
|+|+| ||+|+..|..|++.|+. +.++|....
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 78999 78999999999999995 999997753
No 388
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.69 E-value=0.9 Score=46.52 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=28.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~ 143 (546)
-|.|||+| +|.-.|..++++|++|.++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 58999954 799999999999999999998764
No 389
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=85.48 E-value=1.1 Score=40.28 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=28.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+|+| |++|+.+|..|++.|+ ++.|+|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 3589999 6799999999999999 6899997754
No 390
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.46 E-value=0.95 Score=44.67 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=38.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC---c-----ccccCCHHHHHHHHHcCCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR---E-----QEWNISRKELLELVESGILV 167 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~---~-----r~~~Is~~~l~~L~~lGl~~ 167 (546)
.++|+|+| .|...|-.|++.|+.|+++|+.+..-. . .....+......|.++|+-+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCc
Confidence 58999965 899999999999999999998864311 0 11112223345677778753
No 391
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.44 E-value=1 Score=49.50 Aligned_cols=31 Identities=39% Similarity=0.536 Sum_probs=27.6
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|+|+| |+.|+.+|..|+++|++|.++|+..
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 699999 5689999999999999999999764
No 392
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.37 E-value=1 Score=45.96 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=26.8
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|.|+|+ .+|++.|..|+++|++|.+++|..
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 889995 579999999999999999999853
No 393
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=85.37 E-value=2.1 Score=45.31 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc-CCcEEEcCEEEEecCCC
Q 009027 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNF 260 (546)
Q Consensus 206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-~g~~i~ArlVV~ADG~~ 260 (546)
.+.+.|.+.+.+.|++|+.+++|++|..+++++++.+. +|+++.||.||.|.-..
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence 34455777787889999999999999998888766543 67789999999986544
No 394
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.27 E-value=1.1 Score=45.59 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=28.6
Q ss_pred ccEEEEc-chHHHHHHHHHHhCC-CeEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G-~rVlLlEr~~~ 143 (546)
.-|+|+| ||+|+.+|-.||+.| -++.|+|....
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 4699999 789999999999999 48999996643
No 395
>PLN02676 polyamine oxidase
Probab=85.20 E-value=2.2 Score=47.15 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=30.7
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCCCC
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLK 144 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~~~ 144 (546)
.+|||||||| .|+++|..|+++|+ +|+|+|++...
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 6899999976 59999999999998 59999987654
No 396
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.91 E-value=1.1 Score=46.79 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=27.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|.|||+| +|...|..++.+|++|.++|+.+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 49999955 79999999999999999999875
No 397
>PRK08223 hypothetical protein; Validated
Probab=84.85 E-value=1 Score=46.09 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=28.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+||| ||+|+.+|..||+.|+ ++.|+|....
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 4699999 7899999999999999 6778886643
No 398
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=84.78 E-value=1.4 Score=39.68 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=28.3
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~r-VlLlEr~~ 142 (546)
--|+|+| ||+|.+++..|+..|.+ |.|+-|..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 4699999 78999999999999998 99998763
No 399
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.59 E-value=1.1 Score=45.79 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=25.8
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCeEEEEcC
Q 009027 113 VIVCGG-TLGIFIATALSFKGLRVAIVER 140 (546)
Q Consensus 113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr 140 (546)
|.|+|+ .+|++.|..|+++|++|.+++|
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 889995 5799999999999999999997
No 400
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.37 E-value=1.2 Score=45.52 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|.|+|+| .|..+|..|+++|++|.++|+.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999965 69999999999999999999764
No 401
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=84.35 E-value=0.89 Score=45.93 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=25.1
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCCC
Q 009027 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTLK 144 (546)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~~ 144 (546)
|.|.| ||+|-+ +|..||++|+||+|||-.+..
T Consensus 3 ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~ 40 (275)
T TIGR01287 3 IAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKA 40 (275)
T ss_pred eEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 67889 887665 466788999999999976543
No 402
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.03 E-value=1.2 Score=45.58 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|.|||+| +|...|..|+++|++|.++|+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 38999965 69999999999999999999875
No 403
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=83.97 E-value=0.97 Score=45.71 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=24.6
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 009027 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK 144 (546)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~~ 144 (546)
|.|+| ||+|=++ |++||+.|.||+|||-.+..
T Consensus 4 iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~ 41 (274)
T PRK13235 4 VAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKA 41 (274)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 45668 7877654 77889999999999966543
No 404
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.55 E-value=1.3 Score=45.31 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=27.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|.|||+| .|..+|..|+++|++|.++|+.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999955 79999999999999999999764
No 405
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.53 E-value=1.6 Score=43.58 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=28.2
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
..|+|+| ||+|+.+|..|++.|. ++.++|....
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 5799999 7899999999999998 6778886653
No 406
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=83.31 E-value=0.99 Score=45.39 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=24.2
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~ 143 (546)
|+|.| ||.|=+ +|..||++|.||+|||-.+.
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 56778 777654 47788899999999997753
No 407
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.28 E-value=1.3 Score=45.18 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999955 79999999999999999999775
No 408
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=83.07 E-value=1.1 Score=45.15 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=23.7
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~ 143 (546)
|.|.| ||+|=+ +|..||++|.||+|||-.+.
T Consensus 3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 45667 787665 46678899999999997654
No 409
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=83.02 E-value=1.2 Score=46.72 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 120 LGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 120 ~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
+|+++|..|+++|++|+|+|++.-++
T Consensus 2 aGL~aA~~L~~~G~~v~vlEa~~r~G 27 (450)
T PF01593_consen 2 AGLAAAYYLAKAGYDVTVLEASDRVG 27 (450)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred hHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 59999999999999999999887654
No 410
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=82.99 E-value=1 Score=45.03 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=24.1
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~ 143 (546)
++|+| ||+|-+ +|..||++|.||+|||-.+.
T Consensus 4 iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 4 IAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 56668 887665 46678899999999997664
No 411
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=82.91 E-value=1.7 Score=45.91 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=29.4
Q ss_pred ccEEEEc-chHHHHHHHHHHh--CCCeEEEEcCCCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSF--KGLRVAIVERNTLKG 145 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~--~G~rVlLlEr~~~~~ 145 (546)
.-|+||| ||+|.-+|..|-+ -++.|.++|+.+.|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 4799999 6789999997765 389999999998774
No 412
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=82.80 E-value=1.5 Score=51.96 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=31.9
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
.-|.||| ||+|+++|..|-+.|+-|+|.||..-++
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 5799999 7899999999999999999999987655
No 413
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.77 E-value=1.8 Score=37.34 Aligned_cols=30 Identities=33% Similarity=0.648 Sum_probs=26.8
Q ss_pred EEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
||||| |..|..+|-.|.+.+.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 68999 5689999999999888999999875
No 414
>PRK08328 hypothetical protein; Provisional
Probab=82.55 E-value=1.9 Score=42.72 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=28.1
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+|+| ||+|+.+|..|++.|. ++.|+|....
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4699999 7899999999999998 5778886643
No 415
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.55 E-value=1.7 Score=42.40 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=28.5
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~r-VlLlEr~~ 142 (546)
.-|+|+| ||+|+.+|..|++.|+. +.++|...
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5699999 78999999999999996 89999764
No 416
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=82.36 E-value=1.3 Score=43.06 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=24.0
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~ 143 (546)
|.|.| ||.|-+ +|..||++|.||+|||-.+.
T Consensus 3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q 39 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK 39 (212)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 56778 877665 46678899999999996654
No 417
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=82.18 E-value=13 Score=42.62 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
.|+||||| .|.-+|..+.+.|. +|.++.+..
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 69999976 58888888888887 699888663
No 418
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=81.92 E-value=1.8 Score=43.23 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=27.8
Q ss_pred cccEEEEc-chHHHHHHHHHHhCC-----------CeEEEEcCCC
Q 009027 110 TFDVIVCG-GTLGIFIATALSFKG-----------LRVAIVERNT 142 (546)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LA~~G-----------~rVlLlEr~~ 142 (546)
...|+||| ||+|+.++-.||+.| .++.|+|...
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 56899999 789999999999874 3889998664
No 419
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=81.63 E-value=15 Score=40.35 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=26.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
-.|+|+||| .|+-+|..+.+.|. +|.|+++..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 369999976 68888888888896 699998764
No 420
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.60 E-value=2 Score=41.67 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=26.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~ 141 (546)
--|+||||| +|...|..|.+.|.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 469999976 7999999999999999999753
No 421
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=81.59 E-value=1.7 Score=45.33 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=27.0
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 009027 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERN 141 (546)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~ 141 (546)
.|.|+|. .+|+..|..|+++|++|.+++|.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 4899995 57999999999999999999974
No 422
>PRK04148 hypothetical protein; Provisional
Probab=81.35 E-value=1.4 Score=39.88 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=27.5
Q ss_pred cEEEEcchHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|++||-|.|...|..|++.|++|+.+|.++
T Consensus 19 kileIG~GfG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 19 KIVELGIGFYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred EEEEEEecCCHHHHHHHHHCCCEEEEEECCH
Confidence 5999996699889999999999999999665
No 423
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=81.21 E-value=2.8 Score=42.23 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=27.6
Q ss_pred cccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCC
Q 009027 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERN 141 (546)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~ 141 (546)
.+-|.||| ||+|+.+|-.|.|.|+ |.+|+|=.
T Consensus 82 ~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYD 115 (422)
T KOG2336|consen 82 EFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD 115 (422)
T ss_pred hheeEEEecCchhHHHHHHHHhcCcceEEEeecc
Confidence 47799999 9999999999999999 67777743
No 424
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=81.09 E-value=1.4 Score=45.23 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=23.5
Q ss_pred EEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 009027 114 IVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 114 IIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~ 143 (546)
.|.| ||+|-++ |+.||+.|.||+|||-.+.
T Consensus 8 ai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 8 AFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred EEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3447 7887765 7788999999999996654
No 425
>PRK13236 nitrogenase reductase; Reviewed
Probab=80.78 E-value=1.4 Score=45.35 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=24.4
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 009027 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK 144 (546)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~~ 144 (546)
+.+.| ||+|-++ |+.||++|.||+|+|-.+..
T Consensus 9 ~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~ 46 (296)
T PRK13236 9 IAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKA 46 (296)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 44566 7776654 78899999999999976643
No 426
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=80.78 E-value=1.4 Score=44.35 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=23.4
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 009027 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 113 VIIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~ 143 (546)
|.|+| ||+|-++ |..||++|.||+|||-.+.
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq 41 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 44557 7776654 7788899999999996653
No 427
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.70 E-value=2.1 Score=42.45 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=28.8
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+|+| ||+|+.+|-.|++.|. +..|+|....
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4699999 8899999999999999 7889986653
No 428
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=80.70 E-value=2.2 Score=43.66 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=28.2
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
-.|+|+| ||+|.++|..|++.|. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4699999 7899999999999998 799999874
No 429
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=80.69 E-value=2.3 Score=39.47 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=25.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEc
Q 009027 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVE 139 (546)
Q Consensus 111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlE 139 (546)
--|+||||| +|.--|..|.+.|.+|.||+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 359999976 79999999999999999995
No 430
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.68 E-value=1.8 Score=43.91 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|.|||+| +|...|..|+++|++|.++|+++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 59999955 79999999999999999999775
No 431
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.65 E-value=2 Score=46.54 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=28.1
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-.|+|+|+ ++|..+|..|+++|++|.++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35899995 689999999999999999999864
No 432
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=80.61 E-value=1.5 Score=45.06 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=24.9
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~ 143 (546)
++|.| ||+|=+ +|+.||+.|.||+|||-.+.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 67888 876544 57788999999999997654
No 433
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.16 E-value=2.5 Score=41.69 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=28.1
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
.-|+|+| ||+|+.+|..|++.|. ++.|+|...
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4699999 7899999999999999 778888664
No 434
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=79.83 E-value=1.7 Score=48.40 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=66.5
Q ss_pred CCccCCCCcccccc--------c--cccceeeeccCCCCChhHHHHHhhhccCcccccCchh----hHHHHHHHHHHHHH
Q 009027 10 NGVSHFPSQVHGKR--------K--VSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGA----YSYDALKRLDQIWS 75 (546)
Q Consensus 10 ~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 75 (546)
|-+++|++++-.+| + -.|..+|...|- -|..+-|.|..|.-..--.|-+ .+-+..+++|+...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ilt~~qmr~lD~~ai 104 (544)
T PLN02918 28 HSSSLSSSPSPTQRFLTPSQGSRLPPRRRALCTKSQD---PRWRRAMASLAVIPNMQDSGSPPLSYLTQREAAEIDETLM 104 (544)
T ss_pred CcccCCCCCCccccccCccccccCCCCchhhcccccC---chHHhhhhhhcccccccccCCCceEEeCHHHHHHHHHHHH
Confidence 34777776665555 1 123355555554 3677889998886655544444 26788999999884
Q ss_pred hhccccCcc-------cccceEEecCCCCCCCCCCCCCCCCcccEEEEc-c--hH-HHHHHHHHHhCCCeEEEEc
Q 009027 76 NICSTQTVQ-------QEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCG-G--TL-GIFIATALSFKGLRVAIVE 139 (546)
Q Consensus 76 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~yDVIIVG-G--g~-G~~~Aa~LA~~G~rVlLlE 139 (546)
.-. +.... ..+-+.|.+.- + .. ...-=+|+|| | |. |+.+|..|+..|++|.|+-
T Consensus 105 ~~~-Gis~~~LME~AG~avA~~I~~~~-~--~~------~~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~ 169 (544)
T PLN02918 105 GPL-GFSVDQLMELAGLSVAASIAEVY-K--PG------EYSRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCY 169 (544)
T ss_pred Hhc-CCCHHHHHHHHHHHHHHHHHHhc-c--cc------cCCEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEE
Confidence 321 11100 01112221110 0 00 0011156678 5 44 9999999999999999885
No 435
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=79.78 E-value=2.5 Score=42.25 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=28.8
Q ss_pred cccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
...|+|+| ||+|+.+|..|++.|+ +..|+|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35799999 7899999999999998 788998664
No 436
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=79.45 E-value=2.4 Score=42.14 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=27.1
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-++|.|| |+|..+|..|+++|++|++++|..
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 7 VVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4788884 689999999999999999998764
No 437
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.29 E-value=2.3 Score=43.80 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=27.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|.|||+| +|..+|..|+++|++|.++|+..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 58999955 79999999999999999999764
No 438
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=79.18 E-value=2.9 Score=40.45 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=27.3
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCC
Q 009027 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN 141 (546)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~ 141 (546)
-|+|+| |.+|..+|..|.+.|.+|++.|++
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 499999 668999999999999999999866
No 439
>PLN02268 probable polyamine oxidase
Probab=79.11 E-value=4.9 Score=43.31 Aligned_cols=33 Identities=36% Similarity=0.458 Sum_probs=29.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~ 144 (546)
+||||||| +|+++|..|.++|++|+|+|+..-.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~ 35 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRI 35 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 79999977 5999999999999999999976543
No 440
>PRK08177 short chain dehydrogenase; Provisional
Probab=78.99 E-value=2.7 Score=40.64 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=27.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|+|.|| ++|..+|..|++.|++|++++|.+
T Consensus 4 vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 788894 689999999999999999999875
No 441
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=78.94 E-value=2.6 Score=43.18 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=26.9
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 009027 112 DVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (546)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LA~~G~r-VlLlEr~~ 142 (546)
-|+|+| ||+|.++|..|++.|.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 589999 67899999999999997 99998864
No 442
>PRK06153 hypothetical protein; Provisional
Probab=78.75 E-value=2.2 Score=45.40 Aligned_cols=33 Identities=12% Similarity=0.356 Sum_probs=29.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+||| ||+|+.+|-.||+.|+ ++.|+|...+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 4799999 8999999999999998 7889987654
No 443
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=78.61 E-value=6.1 Score=42.84 Aligned_cols=55 Identities=22% Similarity=0.172 Sum_probs=41.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cc------------c--c--cCCHHHHHHHHHcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQ------------E--W--NISRKELLELVESGIL 166 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r------------~--~--~Is~~~l~~L~~lGl~ 166 (546)
+|+||||| +|+++|..|+++|++|+|+|+++.++. .. + | ...++.++.|+++|+-
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 73 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIE 73 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCc
Confidence 48999976 699999999999999999998865431 00 0 1 1236678888999974
No 444
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=78.60 E-value=7.2 Score=42.86 Aligned_cols=35 Identities=31% Similarity=0.570 Sum_probs=30.9
Q ss_pred ccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027 111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (546)
Q Consensus 111 yDVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~ 145 (546)
-||||||||+ |+++|+.||++|++|+|+||+..++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4899999774 8889999999999999999997664
No 445
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=78.45 E-value=2.4 Score=43.63 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=27.5
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|.|+|+ .+|...|..|++.|+.|.+++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4899995 579999999999999999999864
No 446
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=78.41 E-value=2.4 Score=43.09 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=27.0
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|.||| |-+|.++|..|+++|++|.++|+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 388999 5579999999999999999999754
No 447
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=78.36 E-value=2.3 Score=45.91 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|.|+|-| +|+.+|+.|+++|++|.++|+.+
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 48999954 79999999999999999999764
No 448
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.07 E-value=2.6 Score=41.44 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=27.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|+|.|| ++|..+|..|+++|++|++++|.+
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4899995 689999999999999999999764
No 449
>PLN02780 ketoreductase/ oxidoreductase
Probab=78.01 E-value=2.4 Score=43.98 Aligned_cols=30 Identities=37% Similarity=0.506 Sum_probs=26.9
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
++|.|| |+|..+|..|+++|.+|++++|++
T Consensus 56 ~lITGAs~GIG~alA~~La~~G~~Vil~~R~~ 87 (320)
T PLN02780 56 ALVTGPTDGIGKGFAFQLARKGLNLVLVARNP 87 (320)
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH
Confidence 788884 789999999999999999999864
No 450
>PRK08303 short chain dehydrogenase; Provisional
Probab=77.98 E-value=2.8 Score=43.14 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=27.9
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~ 143 (546)
-++|.|| |+|..+|..|++.|.+|+++.|+..
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~ 43 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTR 43 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence 4788885 7899999999999999999998753
No 451
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=77.95 E-value=2.8 Score=41.37 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.2
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|+|.|| ++|..+|..|+++|++|++++|..
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 40 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADIKP 40 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 3889994 689999999999999999998764
No 452
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=77.85 E-value=2.8 Score=41.55 Aligned_cols=30 Identities=40% Similarity=0.540 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|+|.|| |+|..+|..|+++|++|++++|..
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r~~ 34 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSRNE 34 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 788894 689999999999999999998764
No 453
>PRK06101 short chain dehydrogenase; Provisional
Probab=77.75 E-value=3 Score=40.84 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=26.1
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERN 141 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~ 141 (546)
++|.|| |+|..+|..|+++|++|++++|+
T Consensus 4 vlItGas~giG~~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 4 VLITGATSGIGKQLALDYAKQGWQVIACGRN 34 (240)
T ss_pred EEEEcCCcHHHHHHHHHHHhCCCEEEEEECC
Confidence 788884 68999999999999999999886
No 454
>PRK08339 short chain dehydrogenase; Provisional
Probab=77.66 E-value=3 Score=41.69 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
++|.|| |+|..+|..|+++|++|++++|+.
T Consensus 11 ~lItGas~gIG~aia~~l~~~G~~V~~~~r~~ 42 (263)
T PRK08339 11 AFTTASSKGIGFGVARVLARAGADVILLSRNE 42 (263)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 788884 789999999999999999999864
No 455
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.63 E-value=2.6 Score=43.75 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=27.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|.|+|+| .|.+.|..|+++|++|.+++|.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 38899955 69999999999999999999854
No 456
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.54 E-value=2.7 Score=43.72 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=27.7
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|.|+|+ ..|...|..|+++|++|.+++|.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5999995 579999999999999999999864
No 457
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=77.25 E-value=3.2 Score=41.20 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=27.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~ 143 (546)
|+|.|| ++|..+|..|+++|++|+++++...
T Consensus 12 vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~ 44 (266)
T PRK06171 12 IIVTGGSSGIGLAIVKELLANGANVVNADIHGG 44 (266)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 788884 6899999999999999999997753
No 458
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=77.22 E-value=3.4 Score=40.13 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~ 141 (546)
-|+||||| +|..-+..|.+.|.+|+|++..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 59999976 6988899999999999999864
No 459
>PRK08862 short chain dehydrogenase; Provisional
Probab=77.21 E-value=3.2 Score=40.68 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=27.2
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-++|.|| |+|..+|..|+++|.+|+++.|..
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQ 39 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4889995 689999999999999999998764
No 460
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=77.20 E-value=2.8 Score=42.84 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=27.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|.|||+| +|...|..|+++|++|.++|+++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38999965 79999999999999999999875
No 461
>PRK06057 short chain dehydrogenase; Provisional
Probab=77.16 E-value=3.1 Score=41.09 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=27.4
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|+|+|| ++|..+|..|+++|++|.+++|..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4899995 689999999999999999998764
No 462
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=77.07 E-value=3.2 Score=38.83 Aligned_cols=31 Identities=42% Similarity=0.524 Sum_probs=25.9
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.++|+| |-.|..+|..|...|.+|.|.|..|
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 499999 8899999999999999999999876
No 463
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=77.05 E-value=2.9 Score=44.85 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=28.6
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+||| ||+|+.+|..|++.|+ ++.|+|....
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~v 77 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVV 77 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 5699999 7899999999999999 6788886653
No 464
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=76.89 E-value=3.7 Score=43.69 Aligned_cols=31 Identities=35% Similarity=0.671 Sum_probs=27.4
Q ss_pred ccEEEEcc-h-HHHHHHHHHHhCCCeEEEEcCC
Q 009027 111 FDVIVCGG-T-LGIFIATALSFKGLRVAIVERN 141 (546)
Q Consensus 111 yDVIIVGG-g-~G~~~Aa~LA~~G~rVlLlEr~ 141 (546)
--|.|||| | +|.++|..|.++|+.|.++++.
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 35999984 5 6999999999999999999975
No 465
>PRK06483 dihydromonapterin reductase; Provisional
Probab=76.85 E-value=3.5 Score=40.12 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=27.2
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-++|.|| |+|..+|..|+++|++|++++|.+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 3788884 689999999999999999999864
No 466
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=76.71 E-value=3.2 Score=45.03 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.6
Q ss_pred EEeCceEEEEEEeC-CeEEEEEcCCcEEEcCEEEE
Q 009027 222 IFEGYSVSSICTYE-NAAVLLLAEGKILSSHLIID 255 (546)
Q Consensus 222 v~~~t~v~~i~~~~-dgv~V~~~~g~~i~ArlVV~ 255 (546)
+..+++|..+...+ +.++|++.||+.+.|+.||.
T Consensus 246 ~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIv 280 (498)
T KOG0685|consen 246 IHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIV 280 (498)
T ss_pred hcccccceeeccCCCCcEEEEEeCCcEEeccEEEE
Confidence 34458899987664 56899999999999999994
No 467
>PRK06924 short chain dehydrogenase; Provisional
Probab=76.66 E-value=3.4 Score=40.51 Aligned_cols=30 Identities=40% Similarity=0.479 Sum_probs=26.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|+|.|| ++|..+|..|+++|++|+++.|.+
T Consensus 4 vlItGasggiG~~ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 4 VIITGTSQGLGEAIANQLLEKGTHVISISRTE 35 (251)
T ss_pred EEEecCCchHHHHHHHHHHhcCCEEEEEeCCc
Confidence 788884 689999999999999999998754
No 468
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.61 E-value=3.3 Score=44.85 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=27.8
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~ 143 (546)
-|+|+| |+.|.++|..|+++|.+|.+.|+...
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 378999 57899999999999999999997653
No 469
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=76.57 E-value=3.2 Score=43.86 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=28.3
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~ 142 (546)
.-|+|+| ||+|+.+|..|++.|+ ++.|+|...
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4699999 7899999999999999 678888765
No 470
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=76.45 E-value=3.2 Score=44.77 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=27.8
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|+|+| |++|..+|..+...|.+|+++|+.+
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 699999 6789999999999999999999764
No 471
>PRK05854 short chain dehydrogenase; Provisional
Probab=76.42 E-value=3.3 Score=42.64 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=27.1
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-++|.|| |+|..+|..|+++|.+|+++.|..
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~ 48 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVRNR 48 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4788884 789999999999999999998764
No 472
>PRK07102 short chain dehydrogenase; Provisional
Probab=76.36 E-value=3.2 Score=40.53 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|+|.|| ++|..+|..|+++|++|++++|..
T Consensus 4 vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 4 ILIIGATSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 788884 689999999999999999999874
No 473
>PRK05866 short chain dehydrogenase; Provisional
Probab=76.34 E-value=3.4 Score=42.16 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=27.2
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|+|.|| |+|..+|..|+++|++|+++.|+.
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3888894 689999999999999999998763
No 474
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=76.28 E-value=3.6 Score=39.70 Aligned_cols=32 Identities=34% Similarity=0.619 Sum_probs=28.3
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~r-VlLlEr~~ 142 (546)
.-|+|+| ||+|+.+|-.|++.|.+ +.++|...
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5699999 78999999999999996 88998664
No 475
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=76.21 E-value=3.3 Score=40.71 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.4
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|+|.|| ++|..+|..|+++|++|++++|.+
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 34 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQ 34 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 688884 689999999999999999999864
No 476
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=76.01 E-value=3.6 Score=40.72 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=26.3
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERN 141 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~ 141 (546)
-++|.|| |+|..+|..|+++|++|+++.+.
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~vv~~~~~ 41 (251)
T PRK12481 10 VAIITGCNTGLGQGMAIGLAKAGADIVGVGVA 41 (251)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCc
Confidence 3788894 78999999999999999999764
No 477
>PRK07063 short chain dehydrogenase; Provisional
Probab=76.00 E-value=3.4 Score=40.82 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=27.3
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|+|.|| |+|..+|..|+++|++|++++|..
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4888894 689999999999999999999864
No 478
>PRK08265 short chain dehydrogenase; Provisional
Probab=75.99 E-value=3.5 Score=41.02 Aligned_cols=31 Identities=45% Similarity=0.610 Sum_probs=27.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-++|.|| ++|..+|..|+++|++|++++|..
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 8 VAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4888884 689999999999999999999864
No 479
>PRK07024 short chain dehydrogenase; Provisional
Probab=75.95 E-value=3.6 Score=40.66 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=27.3
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|+|.|| ++|..+|..|+++|++|++++|+.
T Consensus 4 ~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~ 36 (257)
T PRK07024 4 KVFITGASSGIGQALAREYARQGATLGLVARRT 36 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4888894 689999999999999999999863
No 480
>PRK07023 short chain dehydrogenase; Provisional
Probab=75.89 E-value=3.5 Score=40.29 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=27.0
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-++|.|| ++|..+|..|+++|++|+++.|..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~ 35 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSR 35 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCc
Confidence 3789994 689999999999999999998764
No 481
>PLN02487 zeta-carotene desaturase
Probab=75.85 E-value=1.5e+02 Score=33.63 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=44.2
Q ss_pred cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-c------cc----------ccCCHHHHHHHHHcCCCCc
Q 009027 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-E------QE----------WNISRKELLELVESGILVE 168 (546)
Q Consensus 110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~------r~----------~~Is~~~l~~L~~lGl~~~ 168 (546)
..+|+||||| .|+++|..|+++|++|+|+|+.+.++. . .. +...++.++.|+++|+.++
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~ 151 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADEN 151 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccc
Confidence 4689999976 588999999999999999999876541 1 11 1123567888999998543
No 482
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.82 E-value=3.2 Score=44.11 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=28.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.+|+|+| |++|..+|..|.+.|.+|.++|+.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 5699999 5689999999999999999999764
No 483
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.80 E-value=3.4 Score=44.95 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=28.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
--|+|+| |+.|.++|..|+++|++|.+.|...
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 3489999 8899998889999999999999765
No 484
>PRK07326 short chain dehydrogenase; Provisional
Probab=75.78 E-value=3.4 Score=40.07 Aligned_cols=31 Identities=39% Similarity=0.627 Sum_probs=26.9
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
=|+|.|| ++|..+|..|+++|++|+++.|.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 4888884 589999999999999999998764
No 485
>PRK06179 short chain dehydrogenase; Provisional
Probab=75.76 E-value=3.5 Score=40.97 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=27.1
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|+|.|| ++|..+|..|+++|++|+++.|..
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 3888894 689999999999999999999864
No 486
>PRK06720 hypothetical protein; Provisional
Probab=75.75 E-value=4 Score=38.30 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=27.0
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-++|.|| |+|..+|..|+++|.+|.++++..
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~ 50 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ 50 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence 5888884 689999999999999999999763
No 487
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.68 E-value=3.5 Score=43.92 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=28.9
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+|+| ||+|+.+|..|++.|. ++.|+|....
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v 170 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVV 170 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 5699999 7899999999999999 6899997653
No 488
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=75.67 E-value=3.6 Score=38.15 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=27.0
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
.|-+|| |-+|..+|..|+++|++|.+.||.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 588999 6789999999999999999999774
No 489
>PRK07411 hypothetical protein; Validated
Probab=75.56 E-value=3.4 Score=44.26 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=28.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+||| ||+|+.+|..|++.|+ ++.|+|....
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~v 73 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVV 73 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEe
Confidence 5699999 7899999999999999 6788886643
No 490
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.50 E-value=3.5 Score=40.22 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=27.8
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|+|.|| ++|..+|..|+++|++|+++.|.+
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4899994 689999999999999999999875
No 491
>PRK08267 short chain dehydrogenase; Provisional
Probab=75.49 E-value=3.5 Score=40.76 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=26.5
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
++|.|| ++|..+|..|+++|.+|.+++|..
T Consensus 4 vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 35 (260)
T PRK08267 4 IFITGAASGIGRATALLFAAEGWRVGAYDINE 35 (260)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 788884 689999999999999999998764
No 492
>PRK06398 aldose dehydrogenase; Validated
Probab=75.45 E-value=3.9 Score=40.63 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=28.2
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~ 143 (546)
-++|.|| |+|..+|..|+++|++|+++.|...
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 8 VAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 4889995 7899999999999999999998753
No 493
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=75.42 E-value=3.8 Score=40.03 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=27.3
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|+|.|| ++|..+|..|+++|++|+++.|..
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 4889994 689999999999999999998754
No 494
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=75.41 E-value=3.6 Score=43.77 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=29.0
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (546)
Q Consensus 111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~ 143 (546)
.-|+|+| ||+|+.+|..|++.|+ ++.++|....
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v 76 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE
Confidence 4699999 7899999999999998 8899997653
No 495
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=75.40 E-value=3.7 Score=40.53 Aligned_cols=30 Identities=43% Similarity=0.775 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
|+|.|| ++|..+|..|+++|++|++++|..
T Consensus 5 ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~ 36 (259)
T PRK12384 5 AVVIGGGQTLGAFLCHGLAEEGYRVAVADINS 36 (259)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 888895 589999999999999999999764
No 496
>PRK08017 oxidoreductase; Provisional
Probab=75.39 E-value=3.6 Score=40.38 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=27.0
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-|+|.|| ++|..+|..|+++|++|+++.|..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3889994 689999999999999999998764
No 497
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=75.32 E-value=25 Score=42.38 Aligned_cols=31 Identities=35% Similarity=0.448 Sum_probs=25.1
Q ss_pred cEEEEcch-HHHHHHHHHHhC-CC-eEEEEcCCC
Q 009027 112 DVIVCGGT-LGIFIATALSFK-GL-RVAIVERNT 142 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~-G~-rVlLlEr~~ 142 (546)
.|+||||| .|+-+|..+.+. |. +|.+++|..
T Consensus 668 ~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 668 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 69999976 588888877775 86 799999765
No 498
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=75.24 E-value=3.2 Score=46.08 Aligned_cols=57 Identities=25% Similarity=0.240 Sum_probs=37.4
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcc
Q 009027 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVED 169 (546)
Q Consensus 112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~ 169 (546)
-|.|||+ .+|.-.|..++++|++|.|+|+.+..-....-.| ...++.+...|.+++.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i-~~~l~~~~~~G~~~~~ 64 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGI-EARLNSLVTKGKLTAE 64 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH-HHHHHHHHhcCCCCHH
Confidence 4999995 4799999999999999999998764211000001 1334455566765543
No 499
>PRK06114 short chain dehydrogenase; Provisional
Probab=75.15 E-value=4.1 Score=40.22 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=27.2
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (546)
Q Consensus 112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~ 142 (546)
-++|.|| |+|..+|..|++.|++|++++|..
T Consensus 10 ~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~ 42 (254)
T PRK06114 10 VAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT 42 (254)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4788884 689999999999999999999764
No 500
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=75.14 E-value=2.3 Score=43.93 Aligned_cols=60 Identities=30% Similarity=0.402 Sum_probs=39.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccch
Q 009027 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDID 172 (546)
Q Consensus 112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie 172 (546)
-|.|||+| +|.-.|..+|..|++|.+.|.++..- .+..+.....++.+.+.|-+++.+.+
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~-~~~~~~i~~~l~k~~~~g~l~~~~~~ 65 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEAL-ERALAYIEKNLEKLVEKGKLTEEEAD 65 (307)
T ss_pred EEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHH-HHHHHHHHHHHHHHHhcCCCChhhHH
Confidence 48899965 69999999999889999999884321 11112223446666666766554333
Done!