BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009030
         (546 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
 pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
          Length = 374

 Score = 28.9 bits (63), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 11/55 (20%)

Query: 258 NANVIYNCLRAYAAID--NTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDE 310
           N ++ YN       ID  NT + EE            K++PHG    +AGASGDE
Sbjct: 3   NNDIEYNAPSEIKYIDVVNTYDLEE---------EASKVVPHGGFNYIAGASGDE 48


>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
 pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
 pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
 pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
 pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
           Complex
 pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
           Complex
 pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
           Complex
 pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
           Complex
 pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
           Viridans
 pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
           Viridans
          Length = 374

 Score = 28.9 bits (63), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 11/55 (20%)

Query: 258 NANVIYNCLRAYAAID--NTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDE 310
           N ++ YN       ID  NT + EE            K++PHG    +AGASGDE
Sbjct: 3   NNDIEYNAPSEIKYIDVVNTYDLEE---------EASKVVPHGGFNYIAGASGDE 48


>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
           And A Substrate Analogue At 1.59 Angstrom Resolution
 pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
           And A Substrate Analogue At 1.59 Angstrom Resolution
          Length = 368

 Score = 28.5 bits (62), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 293 KIIPHGPSEALAGASGDE 310
           K++PHG    +AGASGDE
Sbjct: 25  KVVPHGGFNYIAGASGDE 42


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,966,341
Number of Sequences: 62578
Number of extensions: 507957
Number of successful extensions: 1293
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1290
Number of HSP's gapped (non-prelim): 4
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)