BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009030
(546 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14746|COG2_HUMAN Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens
GN=COG2 PE=1 SV=1
Length = 738
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/483 (30%), Positives = 252/483 (52%), Gaps = 42/483 (8%)
Query: 21 PADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDY 80
P L F + F+ +FD + ++S+ R V E LR +L+ + L +++LIN+DY
Sbjct: 9 PKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAMVELINKDY 68
Query: 81 ADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASARE 140
ADFVNLST LV +D A+ ++ PL +LRE++ R ++ + A+ + ++ + +
Sbjct: 69 ADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQEDIRKKKM 128
Query: 141 VLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRET 200
+ L+ V K+EK++ N + K S+ P+ G
Sbjct: 129 CVLRLIQVIRSVEKIEKIL---------------NSQSSKETSALEASSPLLTG------ 167
Query: 201 QSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNAN 260
+LERIA+E N+L+F+ ++ +P ++ + RI + +L SL + GL+ + +
Sbjct: 168 --QILERIATEFNQLQFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVD 225
Query: 261 VIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQ 320
+I +CLR YA ID TR+AE + +V P + ++I E + + L+ Y ++ +
Sbjct: 226 IIRHCLRTYATIDKTRDAEALVGQVLVKPYIDEVI----IEQFVESHPNGLQVMYNKLLE 281
Query: 321 CVEKDCKFLLD-----ISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFL 375
V C+ L + ISS + + + +DFL NS+ +++ +++ P F+PG P F
Sbjct: 282 FVPHHCRLLREVTGGAISSEKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFH 341
Query: 376 RNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSAL 435
Y S+DF+ LE C S+++V + RA Y F K+WN+ VYF +RF+EIAG+L++AL
Sbjct: 342 EKYTISMDFVRRLERQCGSQASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAAL 401
Query: 436 T-AASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLS 494
T AP ++ L S S++ CW ++FL + RL+LQ+L+
Sbjct: 402 TDVLEDAPAES---------PYCLLASHRTWSSLRRCWSDEMFLPLLVHRLWRLTLQILA 452
Query: 495 RYS 497
RYS
Sbjct: 453 RYS 455
>sp|Q921L5|COG2_MOUSE Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus
GN=Cog2 PE=2 SV=2
Length = 731
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/486 (28%), Positives = 255/486 (52%), Gaps = 40/486 (8%)
Query: 21 PADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDY 80
P L F + F+ +FD + ++S+ R V E LR +L+ + L +++LIN+DY
Sbjct: 9 PTGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAMVELINKDY 68
Query: 81 ADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASARE 140
ADFVNLST LV +D A+ ++ PL +LRE++ R ++ ++A+ + ++ + +
Sbjct: 69 ADFVNLSTNLVGMDRALNQLSVPLGQLREEVLSLRSSVSEGILAVDERMSKQEDIRKKKM 128
Query: 141 VLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRET 200
+ L+ V K+EK++ N + K +SS P+ G
Sbjct: 129 SVLRLIQVIRSVEKIEKIL---------------NSQSSKDVSSQEASSPLLTG------ 167
Query: 201 QSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNAN 260
+LERIA+E N+L+F+ ++ +P ++ + RI + +L SL + GL+ + +
Sbjct: 168 --QVLERIATEFNQLQFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVD 225
Query: 261 VIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQ 320
++ +CLR YA ID T++AE + +V P + ++I E + L+ Y ++ +
Sbjct: 226 IVRHCLRTYATIDKTQDAEALVGQVLVKPYVNEVI----VEQFVESHPSSLQLMYNKLLE 281
Query: 321 CVEKDCKFLLDI-----SSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFL 375
V C+ L ++ SS + + + +DFL NS+ E++ +++ P F+PG P F
Sbjct: 282 FVPHHCRLLREVTGGAVSSEKGTIVPGYDFLVNSVWPEIVRGLEEKLPSLFNPGDPDAFH 341
Query: 376 RNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSAL 435
+ Y S+DF+ E C S+++V + RA Y F +WN+ VYF +RF+E+AG+L++AL
Sbjct: 342 QKYTVSMDFVQRFERQCGSQASVKRLRAHPAYHNFSNKWNLPVYFQIRFREVAGSLEAAL 401
Query: 436 TAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSR 495
T ++ G+ L + S+ CW ++FL + + RL+LQ+L+R
Sbjct: 402 TDGL------EDAPAGSPYCLLASHRTWI--SLGKCWSDEMFLPLLAHRLWRLTLQILAR 453
Query: 496 YSNWLS 501
+S ++S
Sbjct: 454 FSVFVS 459
>sp|Q9VF78|COG2_DROME Conserved oligomeric Golgi complex subunit 2 OS=Drosophila
melanogaster GN=ldlCp PE=2 SV=1
Length = 710
Score = 152 bits (383), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 134/505 (26%), Positives = 220/505 (43%), Gaps = 51/505 (10%)
Query: 9 PPPRSATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSL 68
P +SA + + L F N F+ NF + ++ + R E LR L +L L
Sbjct: 4 PVKKSAHLTAGSTSTAEKLCFDKNEFMKANFSVDEFLHKNRNAPSLEQLRDNLGLYLKGL 63
Query: 69 NHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNG 128
+IDLIN DYADFVNLS LV +D + ++ PL + R I+ G ++ ++ L+
Sbjct: 64 RAAMIDLINEDYADFVNLSANLVGLDQNIKTIQQPLEQFRSDIESIHGLIDENVTELRAQ 123
Query: 129 LKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTF 188
L+++ + + L+ L + ++K++ LI +RK
Sbjct: 124 LEEKRQLREFKRGLQSLKKVYETINKLQDLI------------------DRKLSGE---- 161
Query: 189 QPVENGTNVRETQSMLLERIASEMNRLKFYIAHA-QNLPFIENMEKRIKSASLLLDASLG 247
QP+ +++ LER A ++ +LKF+ H ++L + + +I+ L L
Sbjct: 162 QPI---------KAVDLERAALDLIQLKFHEKHCFKHLS--PDHQGKIQQLEEQLHQHLR 210
Query: 248 HCFVHGLEHQNANV---IYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALA 304
F L + + CLR Y ++ AE F VVAP M +I G +
Sbjct: 211 RFFNDALSQARNSAPESLERCLRIYITLNACDQAECAFREDVVAPYMTGVI--GEQQLQN 268
Query: 305 GASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPG 364
G L Y +I + LL ++ + F+F+ NS +V + ++
Sbjct: 269 SPQG--LAGIYSKILNFISLHMTDLLRLTLYSDK-FPGFNFVVNSYWSDVETRLELHMNS 325
Query: 365 AFSPGRPTQFLRNYKSSLDFLAYLEGY--CPSRSAVAKFRAEAIYVEFMKQWNVGVYFSL 422
F+PG F YK + DFL +E C AV +R F +WN+ VYF +
Sbjct: 326 IFAPGNSEVFYVKYKCTRDFLGKIEELLTCSGEQAVTFYRQHKQTKSFEARWNLPVYFQI 385
Query: 423 RFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSV--TLLDSMKSCWRQDVFLLP 480
FQEIAG + A L PV +S + N K S ++M CW + V+L
Sbjct: 386 CFQEIAGKFE-----AQLEPVLQEDSLKDNLTDSDYKISAFNAAKEAMTRCWAEGVYLPE 440
Query: 481 CSDKFLRLSLQLLSRYSNWLSSGLA 505
KF +L++Q++ R S W++ +
Sbjct: 441 VFPKFYKLNVQVVLRLSRWITDAIT 465
>sp|Q54UC2|COG2_DICDI Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium
discoideum GN=cog2 PE=3 SV=1
Length = 904
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 147/341 (43%), Gaps = 35/341 (10%)
Query: 26 PLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVN 85
PL F ++F S F+ + +IS+ R V E+++ +L+ + L+ ELI+LIN++Y F +
Sbjct: 52 PLCFSKDVFTSNTFEVDQFISDCRKRVNLESVQKDLREYSKHLDSELIELINKEYQSFFS 111
Query: 86 LSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELL 145
LST LV D + ++ +I F + +++ L ++ +++L+L
Sbjct: 112 LSTSLVGFDTILNEFSISQSSIKSEIKSFNNEIVKVRGLVEDKLNEKKSIEQKKKLLQLY 171
Query: 146 LDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLL 205
+ ++ + L +L L +DF +K ++ E N + +L+
Sbjct: 172 ISISETLNNMNHLFDQLYQL-THPNDF------KKINNNNNNHTNNETNINDGDVLELLI 224
Query: 206 ERIASEM------------NRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVH- 252
+RI++ + LKF I + +L ++ K + + SL F++
Sbjct: 225 DRISNSFYQIQNQMSSLTNDELKFNIFQSLSLKIMDLSNKIEEKVEPIFKESLKR-FINV 283
Query: 253 ----------GLEHQNA---NVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGP 299
E QN ++ CL+ + ID ++F +V P + +I+
Sbjct: 284 NNNNKEIVDDNNEKQNKYDERILLVCLKTFQTIDKLNVPYKLFKTLIVKPRLAQIVSLRN 343
Query: 300 SEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGL 340
E + ++ D L Y I + ++ C DIS+ N+ L
Sbjct: 344 LE-INKSTTDGLSQIYNSIIEFLKNQCSSFFDISNLINNNL 383
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 345 FLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLE-GYCPSRSAVAKFRA 403
F++ S+L E+ ++ K F+ G P F +NY + +F+ +E + ++ + +FR
Sbjct: 442 FISQSVLPEIDESLGFFK-QIFATGIPDLFYKNYYLTFNFIQSIEVNFLTNKELLTQFRQ 500
Query: 404 EAIYVEFMKQWNVGVYFSLRFQEIAGALD---------SALTAASLAPVQNSNSNQGNSQ 454
+ Y K+WN VYF L F IA + LT + N+N+N N+
Sbjct: 501 SSSYSSLWKKWNFAVYFQLCFTNIAQHFEFNYLRIPLFDQLTLPTNNITNNNNNNNENNN 560
Query: 455 ALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGL 504
LK + L SM CW F+ S KF +L LQL++RY ++S L
Sbjct: 561 EFYLKSTDGLRLSMDKCWSNSNFIFDLSSKFFKLFLQLIARYDTFISDTL 610
>sp|Q21444|COG2_CAEEL Conserved oligomeric Golgi complex subunit 2 OS=Caenorhabditis
elegans GN=cogc-2 PE=2 SV=1
Length = 681
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 17 LFSDP----ADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHEL 72
+F+ P D L F F +F+ E +++ R +T++ +L+ +L S+ + +
Sbjct: 10 MFASPNTFYIDESKLCFNKTHFNREDFNVERFMNLARQKSDLKTIQQDLRLYLKSVQNSM 69
Query: 73 IDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQR 132
I+LIN DYADFV+LS+ LV + ++ ++ + + D F+ + S V + ++Q+
Sbjct: 70 IELINDDYADFVHLSSNLVSLQDSLNKIEQDINRI---WDEFKESTRES-VGMAERIEQK 125
Query: 133 -SEAASAREVLELLLDTFHVVSKVEKL 158
E S RE + D + + +EKL
Sbjct: 126 CDELCSNREKQIEIRDRIYFLVAIEKL 152
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 10/155 (6%)
Query: 345 FLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAE 404
FL ++L +L+ I K P F + + +F+ R+ + R
Sbjct: 292 FLDETLLTFILTFIDKCMGAVAVPSDTRLFHECFLLTQEFIDNWPSSHTCRAMLKSIR-- 349
Query: 405 AIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTL 464
++N+ VYF L D ++ A + S N+ N+ L S +
Sbjct: 350 -------DKFNLLVYFKLETHRFGKQCDQLMSPEMFAEPETS-ENRENTPQLHCGVSRAI 401
Query: 465 LDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNW 499
+ +++ W DV+L P DK +L+LL ++ +W
Sbjct: 402 ITAIEHVWSDDVYLPPIVDKLWDFTLKLLLKHFSW 436
>sp|O59705|COG2_SCHPO Conserved oligomeric Golgi complex subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cog2 PE=3 SV=2
Length = 191
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 49 RTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELR 108
+ F+ + L +EL +N+EL+ L+ +Y DFV+L +++ + V + + +
Sbjct: 42 KRFLGLDGLVNELSRLFEQVNNELMLLVKDNYQDFVHLGSRMKSGNTKVSTLISSIHRSE 101
Query: 109 EKIDGFRGALEGSLVALQNGLKQRSEAASAREVLE--LLLD 147
E++ + +L G +QN LK + + + + + LLLD
Sbjct: 102 EQLKNSKQSLIGHSTEIQNNLKHKQDVENEKLIASNLLLLD 142
>sp|Q5AAJ8|RT109_CANAL Histone acetyltransferase RTT109 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=RTT109 PE=3 SV=1
Length = 359
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 19/112 (16%)
Query: 444 QNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSG 503
+N N N Q+L L+ ++++DS+ W ++P +DK+ + + + +YS+W S G
Sbjct: 190 KNPYKNLLNGQSL-LRWWISIIDSITKGWNNHKLMIPGADKY--ATRKFIEKYSDW-SEG 245
Query: 504 LAARSSGHASFNPGNEWAISAAPDD---------FIYVRLAPCPISRIYLQL 546
+ G A AI PDD + R +SR Y +L
Sbjct: 246 HIFKKDGLAV------QAIPLFPDDPKGRFLELVIVECRYGKMTVSRFYQEL 291
>sp|Q57886|RIO1_METJA RIO-type serine/threonine-protein kinase Rio1 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rio1 PE=3 SV=1
Length = 290
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 306 ASGDELESDYEQIKQCVEKDCKFLLDISSA-----ENSGLHVFDFLANSILKEVLSAIQK 360
+ +E + D E K+ +EK+ KFL D+ +A + + + +F LA L E + +
Sbjct: 25 SEKEEFQLDREYQKEILEKERKFLEDLKTANEVFDKRTLMTLFSLLAGKHLTEYIGIVNS 84
Query: 361 GKPGAFSPGRPTQFLRNYK----SSLDFLA---YLEG 390
GK R +F R K ++ DF Y++G
Sbjct: 85 GKEAVVFKARKGKFYRAVKVYRVATCDFKTMSKYIQG 121
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 253 GLEHQNANVIYNCL-RAYAAIDNTR---NAEEIFCNTVVAPLMQKIIPHGPSEALAGASG 308
G H + N L R D T + E + N+ + L+ +P L G G
Sbjct: 32 GCGHTVCKMCLNKLHRKACPFDQTTINTDIELLPVNSALLQLVGAQVPEQQQITLCGGCG 91
Query: 309 DELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLS 356
E YE+ ++CVE+ +L +S+A GL NS + VLS
Sbjct: 92 AEDTKHYEEARKCVEELALYLKPLSTARGVGL-------NSTTQSVLS 132
>sp|Q601T8|DNLJ_MYCH2 DNA ligase OS=Mycoplasma hyopneumoniae (strain 232) GN=ligA PE=3
SV=1
Length = 692
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 220 AHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAE 279
++ +NL N E IK A ++ +G VH N +++ NC + + + N+ +
Sbjct: 373 SYIENLKLNLNTEVYIKKAGEIIPQIIGS--VHNYPKTNFSIVKNCPKCNSELVNSESGL 430
Query: 280 EIFCNTVVAP--LMQKIIPHGPSEAL 303
+ FC P ++QKI+ AL
Sbjct: 431 DQFCQNQFCPEIILQKIVHFCSKNAL 456
>sp|Q4AA72|DNLJ_MYCHJ DNA ligase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 /
NCTC 10110) GN=ligA PE=3 SV=2
Length = 692
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 220 AHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAE 279
++ +NL N E IK A ++ +G VH N +++ NC + + + N+ +
Sbjct: 373 SYIENLKLNLNTEVYIKKAGEIIPQIIGS--VHNYPKTNFSIVKNCPKCNSELVNSESGL 430
Query: 280 EIFCNTVVAP--LMQKIIPHGPSEAL 303
+ FC P ++QKI+ AL
Sbjct: 431 DQFCQNQFCPEIILQKIVHFCSKNAL 456
>sp|Q4A899|DNLJ_MYCH7 DNA ligase OS=Mycoplasma hyopneumoniae (strain 7448) GN=ligA PE=3
SV=2
Length = 692
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 220 AHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAE 279
++ +NL N E IK A ++ +G VH N +++ NC + + + N+ +
Sbjct: 373 SYIENLKLNLNTEVYIKKAGEIIPQIIGS--VHNYPKTNFSIVKNCPKCNSELVNSESGL 430
Query: 280 EIFCNTVVAP--LMQKIIPHGPSEAL 303
+ FC P ++QKI+ AL
Sbjct: 431 DQFCQNQFCPEIILQKIVHFCSKNAL 456
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,851,925
Number of Sequences: 539616
Number of extensions: 7484391
Number of successful extensions: 21991
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 21951
Number of HSP's gapped (non-prelim): 70
length of query: 546
length of database: 191,569,459
effective HSP length: 122
effective length of query: 424
effective length of database: 125,736,307
effective search space: 53312194168
effective search space used: 53312194168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)