Query 009030
Match_columns 546
No_of_seqs 167 out of 212
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 19:33:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2307 Low density lipoprotei 100.0 1E-118 3E-123 934.6 45.5 477 11-534 5-484 (705)
2 PF06148 COG2: COG (conserved 100.0 1.5E-34 3.2E-39 263.9 2.9 133 27-159 1-133 (133)
3 PF10191 COG7: Golgi complex c 99.1 2.7E-07 5.9E-12 106.6 36.3 304 32-394 3-335 (766)
4 PF10475 DUF2450: Protein of u 98.8 5.2E-06 1.1E-10 85.7 27.7 215 32-287 6-225 (291)
5 PF06248 Zw10: Centromere/kine 98.6 4.7E-05 1E-09 86.1 29.6 291 52-390 10-353 (593)
6 PF10392 COG5: Golgi transport 98.4 1.2E-05 2.6E-10 73.5 14.9 118 32-149 1-126 (132)
7 PF08700 Vps51: Vps51/Vps67; 98.2 7.3E-06 1.6E-10 69.0 8.6 81 34-114 1-84 (87)
8 PF04100 Vps53_N: Vps53-like, 97.7 0.018 3.8E-07 62.0 24.6 207 37-294 2-226 (383)
9 KOG2346 Uncharacterized conser 97.2 0.0017 3.6E-08 69.9 10.3 100 18-119 14-116 (636)
10 KOG2211 Predicted Golgi transp 97.0 0.3 6.4E-06 55.0 24.5 216 32-286 51-268 (797)
11 PF04048 Sec8_exocyst: Sec8 ex 96.9 0.03 6.6E-07 51.8 13.7 94 34-127 16-111 (142)
12 KOG4182 Uncharacterized conser 96.6 0.46 1E-05 51.6 21.8 220 30-290 2-235 (828)
13 PF15469 Sec5: Exocyst complex 96.0 0.97 2.1E-05 43.3 19.1 165 70-277 2-173 (182)
14 PF04124 Dor1: Dor1-like famil 95.4 4.2 9.2E-05 42.9 22.5 92 52-150 7-101 (338)
15 KOG2115 Vacuolar sorting prote 95.0 8.5 0.00018 45.1 24.5 130 31-160 199-347 (951)
16 KOG2180 Late Golgi protein sor 95.0 8.7 0.00019 44.0 31.0 385 32-473 12-428 (793)
17 PF07393 Sec10: Exocyst comple 93.1 22 0.00047 41.5 26.7 179 205-391 74-274 (710)
18 KOG2307 Low density lipoprotei 83.1 4.2 9.1E-05 45.3 7.9 124 28-164 32-158 (705)
19 smart00762 Cog4 COG4 transport 81.3 40 0.00088 35.4 14.5 51 236-286 2-52 (324)
20 KOG2176 Exocyst complex, subun 80.7 1.2E+02 0.0027 35.5 30.2 109 53-161 45-153 (800)
21 KOG2347 Sec5 subunit of exocys 79.0 27 0.00058 41.1 12.8 108 34-144 166-281 (934)
22 KOG2069 Golgi transport comple 75.5 1.5E+02 0.0033 33.6 25.3 109 40-156 20-131 (581)
23 smart00787 Spc7 Spc7 kinetocho 74.5 70 0.0015 33.6 13.7 21 51-71 139-159 (312)
24 KOG1961 Vacuolar sorting prote 72.3 1.5E+02 0.0033 33.7 15.9 75 59-133 46-130 (683)
25 PF07889 DUF1664: Protein of u 68.0 62 0.0014 29.5 10.0 41 92-132 40-80 (126)
26 PF04156 IncA: IncA protein; 64.3 1.3E+02 0.0029 28.6 13.3 65 56-124 95-159 (191)
27 PF08318 COG4: COG4 transport 64.0 36 0.00079 35.8 9.1 52 236-287 2-53 (331)
28 PF08385 DHC_N1: Dynein heavy 63.1 1.8E+02 0.0039 32.5 15.1 49 364-417 170-218 (579)
29 PF10267 Tmemb_cc2: Predicted 62.8 2E+02 0.0043 31.4 14.3 19 221-239 299-318 (395)
30 PF10186 Atg14: UV radiation r 61.1 1.6E+02 0.0034 29.8 13.0 86 26-120 3-95 (302)
31 PF08317 Spc7: Spc7 kinetochor 59.6 1.5E+02 0.0032 31.2 12.7 35 50-84 143-183 (325)
32 PF04129 Vps52: Vps52 / Sac2 f 59.5 3E+02 0.0064 30.9 18.5 122 373-499 325-460 (508)
33 PF15290 Syntaphilin: Golgi-lo 57.0 1.4E+02 0.003 30.9 11.1 104 40-160 55-166 (305)
34 PF06103 DUF948: Bacterial pro 56.0 1.1E+02 0.0023 25.7 8.9 34 93-126 24-57 (90)
35 PF04048 Sec8_exocyst: Sec8 ex 54.9 84 0.0018 28.9 8.8 76 49-124 40-115 (142)
36 PF02050 FliJ: Flagellar FliJ 54.7 1.3E+02 0.0029 25.4 9.7 68 54-124 21-88 (123)
37 KOG2163 Centromere/kinetochore 50.9 4.4E+02 0.0096 30.3 19.6 65 307-371 279-343 (719)
38 PF09033 DFF-C: DNA Fragmentat 49.7 5.5 0.00012 37.1 0.0 49 100-148 52-100 (164)
39 PF06419 COG6: Conserved oligo 47.8 4.9E+02 0.011 30.0 27.1 88 56-150 20-107 (618)
40 PF10146 zf-C4H2: Zinc finger- 47.6 2.2E+02 0.0048 28.6 11.0 55 107-161 16-71 (230)
41 PF10241 KxDL: Uncharacterized 46.7 1.3E+02 0.0027 25.5 7.9 65 56-120 18-82 (88)
42 TIGR03185 DNA_S_dndD DNA sulfu 46.1 3E+02 0.0064 31.8 13.4 48 79-126 419-466 (650)
43 KOG0412 Golgi transport comple 45.9 5.6E+02 0.012 30.1 20.5 63 232-294 182-247 (773)
44 PRK02224 chromosome segregatio 45.2 3.7E+02 0.0081 32.0 14.4 61 60-120 624-685 (880)
45 PF04728 LPP: Lipoprotein leuc 45.1 51 0.0011 25.8 4.6 30 96-125 4-33 (56)
46 PRK03918 chromosome segregatio 44.1 3.6E+02 0.0079 32.0 14.1 41 81-121 659-699 (880)
47 PF08317 Spc7: Spc7 kinetochor 42.9 4.2E+02 0.0091 27.8 14.0 71 54-124 175-252 (325)
48 PF10158 LOH1CR12: Tumour supp 42.2 2.7E+02 0.0058 25.5 9.7 13 147-159 105-117 (131)
49 PF05377 FlaC_arch: Flagella a 42.0 86 0.0019 24.4 5.5 30 93-122 5-34 (55)
50 PF07889 DUF1664: Protein of u 41.8 92 0.002 28.4 6.6 38 87-124 67-104 (126)
51 PF09755 DUF2046: Uncharacteri 41.4 4.5E+02 0.0097 27.7 19.3 89 56-144 106-199 (310)
52 cd07356 HN_L-whirlin_R1_like F 41.3 99 0.0022 25.6 6.0 41 257-297 19-66 (78)
53 PF08112 ATP-synt_E_2: ATP syn 40.5 78 0.0017 24.3 4.9 33 52-84 7-39 (56)
54 KOG4552 Vitamin-D-receptor int 40.0 3.3E+02 0.0072 27.0 10.4 23 65-87 20-43 (272)
55 TIGR00606 rad50 rad50. This fa 39.5 4.4E+02 0.0095 33.3 14.3 96 26-126 681-782 (1311)
56 PF03114 BAR: BAR domain; Int 39.5 3.4E+02 0.0073 25.7 11.6 26 51-76 39-64 (229)
57 PF08581 Tup_N: Tup N-terminal 39.0 1.5E+02 0.0032 24.8 6.9 18 70-87 3-20 (79)
58 PF04156 IncA: IncA protein; 38.6 3.5E+02 0.0076 25.7 12.2 67 58-128 83-149 (191)
59 PRK11637 AmiB activator; Provi 38.4 3.5E+02 0.0075 29.5 11.8 38 89-126 76-113 (428)
60 PF05478 Prominin: Prominin; 38.1 7.6E+02 0.017 29.4 19.7 33 52-84 176-208 (806)
61 PF08385 DHC_N1: Dynein heavy 38.1 6.1E+02 0.013 28.3 14.3 57 369-436 505-561 (579)
62 PF05266 DUF724: Protein of un 38.1 2E+02 0.0043 28.0 8.8 43 33-75 80-122 (190)
63 KOG2129 Uncharacterized conser 37.8 5E+02 0.011 28.5 12.2 43 102-144 179-222 (552)
64 COG3006 MukF Uncharacterized p 37.3 3E+02 0.0065 28.7 10.1 118 30-155 153-284 (440)
65 PHA02562 46 endonuclease subun 36.4 5.1E+02 0.011 28.9 13.1 22 52-73 302-323 (562)
66 PF01627 Hpt: Hpt domain; Int 36.1 1.5E+02 0.0031 23.7 6.6 44 54-97 3-46 (90)
67 PRK00286 xseA exodeoxyribonucl 36.0 6.1E+02 0.013 27.6 15.4 72 37-108 235-318 (438)
68 KOG0964 Structural maintenance 35.9 5.6E+02 0.012 31.2 13.1 102 57-161 395-499 (1200)
69 KOG4797 Transcriptional regula 35.2 1.8E+02 0.0039 25.8 7.0 60 83-145 36-96 (123)
70 KOG3758 Uncharacterized conser 35.0 7.6E+02 0.017 28.5 17.9 83 56-146 53-136 (655)
71 PF05701 WEMBL: Weak chloropla 34.0 3.8E+02 0.0081 30.2 11.4 55 83-140 276-330 (522)
72 PF04740 LXG: LXG domain of WX 33.6 3E+02 0.0065 26.4 9.4 78 54-131 100-181 (204)
73 PLN03242 diacylglycerol o-acyl 33.5 19 0.00041 39.2 1.0 22 402-423 298-319 (410)
74 PF04136 Sec34: Sec34-like fam 32.7 4.2E+02 0.0091 24.8 17.0 69 92-160 18-86 (157)
75 PRK07720 fliJ flagellar biosyn 32.1 3.9E+02 0.0085 24.3 10.0 33 91-123 74-106 (146)
76 PRK10803 tol-pal system protei 32.0 5.6E+02 0.012 26.1 16.4 52 96-156 55-106 (263)
77 TIGR00606 rad50 rad50. This fa 31.9 6.5E+02 0.014 31.8 14.0 70 74-143 944-1025(1311)
78 KOG3564 GTPase-activating prot 31.6 2.2E+02 0.0048 31.7 8.5 87 54-144 12-98 (604)
79 PF07200 Mod_r: Modifier of ru 31.6 3.9E+02 0.0084 24.4 9.4 57 70-126 7-65 (150)
80 PF12277 DUF3618: Protein of u 30.9 1.4E+02 0.0031 22.3 5.1 39 102-140 3-41 (49)
81 PLN02401 diacylglycerol o-acyl 30.9 22 0.00048 39.0 1.0 49 374-423 296-344 (446)
82 KOG0976 Rho/Rac1-interacting s 30.0 1E+03 0.022 28.5 16.1 65 58-122 254-318 (1265)
83 cd07628 BAR_Atg24p The Bin/Amp 29.9 5.1E+02 0.011 24.9 11.2 6 78-83 39-44 (185)
84 PF05363 Herpes_US12: Herpesvi 29.6 47 0.001 27.6 2.4 27 41-67 8-35 (86)
85 KOG0995 Centromere-associated 29.1 9.1E+02 0.02 27.6 17.5 24 226-249 553-576 (581)
86 PF10146 zf-C4H2: Zinc finger- 28.7 5.7E+02 0.012 25.7 10.5 9 56-64 5-13 (230)
87 COG3343 RpoE DNA-directed RNA 28.0 1E+02 0.0022 29.6 4.7 55 41-95 19-80 (175)
88 TIGR00255 conserved hypothetic 27.8 7.1E+02 0.015 25.9 13.7 9 79-87 106-114 (291)
89 PF05791 Bacillus_HBL: Bacillu 27.7 5.5E+02 0.012 24.6 11.8 71 57-127 60-135 (184)
90 KOG4331 Polytopic membrane pro 27.6 1.1E+03 0.023 28.3 13.5 112 54-166 191-325 (865)
91 PF03915 AIP3: Actin interacti 27.1 4.1E+02 0.0089 29.2 9.8 54 51-105 150-212 (424)
92 PF06466 PCAF_N: PCAF (P300/CB 26.9 4.8E+02 0.01 26.7 9.5 96 310-414 108-210 (252)
93 PRK10884 SH3 domain-containing 26.7 5.5E+02 0.012 25.3 9.8 37 38-78 78-115 (206)
94 smart00502 BBC B-Box C-termina 26.4 4.1E+02 0.0088 22.7 13.0 39 95-133 21-59 (127)
95 PF01535 PPR: PPR repeat; Int 26.2 69 0.0015 20.2 2.4 23 264-286 5-27 (31)
96 PF06103 DUF948: Bacterial pro 26.0 3.8E+02 0.0083 22.2 9.6 31 99-129 23-53 (90)
97 PF12126 DUF3583: Protein of u 25.5 4.7E+02 0.01 27.3 9.2 77 50-126 33-121 (324)
98 PRK06443 chorismate mutase; Va 25.4 81 0.0017 30.4 3.6 28 50-81 3-30 (177)
99 PF10267 Tmemb_cc2: Predicted 25.3 9.1E+02 0.02 26.3 13.6 102 50-156 210-318 (395)
100 PRK09546 zntB zinc transporter 25.3 5.9E+02 0.013 26.4 10.5 75 52-126 122-206 (324)
101 PF05911 DUF869: Plant protein 25.1 1.1E+03 0.024 28.1 13.4 76 51-126 80-165 (769)
102 COG0216 PrfA Protein chain rel 24.8 5.6E+02 0.012 27.4 9.8 55 64-119 15-70 (363)
103 PF04912 Dynamitin: Dynamitin 24.6 7.6E+02 0.017 26.5 11.4 65 59-125 212-277 (388)
104 COG5185 HEC1 Protein involved 24.4 1E+03 0.022 26.6 14.9 55 68-122 467-521 (622)
105 cd07590 BAR_Bin3 The Bin/Amphi 23.9 7.4E+02 0.016 24.8 11.8 27 44-70 13-43 (225)
106 PF05667 DUF812: Protein of un 23.7 3.5E+02 0.0075 31.2 8.8 21 139-159 383-403 (594)
107 PF12699 phiKZ_IP: phiKZ-like 23.7 1.7E+02 0.0036 31.1 6.0 79 29-107 27-105 (339)
108 PF04111 APG6: Autophagy prote 23.5 2.9E+02 0.0063 29.0 7.7 45 78-122 26-70 (314)
109 PF10805 DUF2730: Protein of u 23.4 3.5E+02 0.0076 23.6 7.0 19 101-119 64-82 (106)
110 PRK15396 murein lipoprotein; P 23.1 1.9E+02 0.004 24.2 4.9 31 96-126 26-56 (78)
111 COG3352 FlaC Putative archaeal 23.1 6.5E+02 0.014 23.8 11.2 59 68-126 41-103 (157)
112 cd07598 BAR_FAM92 The Bin/Amph 22.7 5.7E+02 0.012 25.3 9.2 48 51-101 27-74 (211)
113 PF10655 DUF2482: Hypothetical 22.2 99 0.0022 26.6 3.1 21 58-78 10-30 (100)
114 COG4026 Uncharacterized protei 22.0 7.8E+02 0.017 24.8 9.6 14 50-63 101-114 (290)
115 PRK07248 hypothetical protein; 21.8 1.1E+02 0.0025 25.4 3.5 24 53-80 2-25 (87)
116 TIGR00756 PPR pentatricopeptid 21.6 1.2E+02 0.0026 19.3 3.0 23 264-286 5-27 (35)
117 PF06350 HSL_N: Hormone-sensit 21.5 9.7E+02 0.021 25.3 15.9 204 132-370 23-259 (313)
118 PF05130 FlgN: FlgN protein; 21.4 5.4E+02 0.012 22.3 10.5 49 54-102 10-58 (143)
119 PRK04778 septation ring format 21.3 1.2E+03 0.027 26.4 17.1 56 230-286 253-312 (569)
120 PRK09039 hypothetical protein; 21.1 7.6E+02 0.017 26.2 10.4 86 54-139 93-196 (343)
121 COG3883 Uncharacterized protei 21.0 6.2E+02 0.013 26.1 9.1 21 92-112 70-90 (265)
122 TIGR02473 flagell_FliJ flagell 20.9 5.9E+02 0.013 22.5 10.2 25 92-116 72-96 (141)
123 PF05478 Prominin: Prominin; 20.9 3.2E+02 0.007 32.5 8.2 33 38-70 605-640 (806)
124 PRK14127 cell division protein 20.7 3.8E+02 0.0081 23.9 6.6 14 145-158 87-100 (109)
125 PF12854 PPR_1: PPR repeat 20.7 1E+02 0.0023 20.9 2.5 22 264-285 12-33 (34)
126 smart00787 Spc7 Spc7 kinetocho 20.6 1E+03 0.022 25.1 12.5 30 86-115 163-192 (312)
127 PF05377 FlaC_arch: Flagella a 20.5 4.2E+02 0.0091 20.7 7.3 48 97-154 2-49 (55)
128 cd07588 BAR_Amphiphysin The Bi 20.5 7.7E+02 0.017 24.3 9.6 23 48-70 18-44 (211)
129 KOG2911 Uncharacterized conser 20.4 1.2E+03 0.025 25.8 15.2 42 90-131 228-269 (439)
130 cd07627 BAR_Vps5p The Bin/Amph 20.4 8.1E+02 0.018 23.9 12.4 39 61-100 96-134 (216)
131 KOG1993 Nuclear transport rece 20.4 1.3E+03 0.029 27.6 12.4 125 238-387 177-331 (978)
132 PF10360 DUF2433: Protein of u 20.3 2.6E+02 0.0057 25.7 5.7 47 102-148 12-59 (132)
133 PF13428 TPR_14: Tetratricopep 20.2 1.1E+02 0.0023 21.8 2.6 23 264-286 6-28 (44)
134 PF14425 Imm3: Immunity protei 20.1 1.3E+02 0.0028 27.1 3.6 28 70-100 7-34 (117)
135 KOG0994 Extracellular matrix g 20.1 1.8E+03 0.039 27.9 15.2 14 148-161 1466-1479(1758)
136 PF03310 Cauli_DNA-bind: Cauli 20.0 6.6E+02 0.014 22.8 8.5 17 148-164 50-69 (121)
No 1
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-118 Score=934.55 Aligned_cols=477 Identities=40% Similarity=0.611 Sum_probs=428.2
Q ss_pred CCCCCcCCCCCCCCCCCccCcCCCCCCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCc
Q 009030 11 PRSATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKL 90 (546)
Q Consensus 11 ~~~~~~~~~~p~~~~~l~F~~~~F~~~dFdvd~FLs~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L 90 (546)
++|+...++.|.++++|||||+.|+++|||||.|++++|.+++||+||+|||.|+|.|+++||||||+|||||||||+||
T Consensus 5 k~sa~~~~g~~~d~~kLcFdk~eFmkedFdve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnL 84 (705)
T KOG2307|consen 5 KTSAALPNGFYIDESKLCFDKTEFMKEDFDVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNL 84 (705)
T ss_pred cccccCCCCCCCCccccccChhhhccccCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 009030 91 VDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGS 170 (546)
Q Consensus 91 ~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL~~l~~~p~~~~ 170 (546)
||+|++|++|++||+++|++|.+.|+.|.+...++++++.+...+|+.|. .+++..+.+.++|+|...+.+.|.+++
T Consensus 85 Vgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~---~lldl~~v~~~ieKL~k~L~s~psk~q 161 (705)
T KOG2307|consen 85 VGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKI---ELLDLIYVLVAIEKLSKMLLSPPSKEQ 161 (705)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999999976665555555554 445556666666666666666665443
Q ss_pred CcccchhhhhccCCCCCCCcccCCcccccchhHHHHHHHHHHHHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHhHHH
Q 009030 171 DFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCF 250 (546)
Q Consensus 171 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~LeRiA~e~~~L~~~~~~~~~~pfv~~~~~RI~~i~~~L~~~L~~~~ 250 (546)
. + | +..|||+|.|+|||+||+++++++ ++.++++||+.++..|++.|+.+|
T Consensus 162 ~-------~--------------~-------a~sLERiAlelnqlkf~a~h~k~~-l~p~~e~ria~~~~~L~qsl~~lf 212 (705)
T KOG2307|consen 162 Q-------D--------------G-------ATSLERIALELNQLKFHASHLKGS-LFPHSEERIAAEKIILSQSLAVLF 212 (705)
T ss_pred c-------c--------------c-------cchHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHhhHHHHHHHHHHHHH
Confidence 2 0 0 113999999999999999999999 999999999999999999999999
Q ss_pred HhhhhhcCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHhhhcCCCCCccccCCCcchHHHHHHHHHHHHH-hhhHHH
Q 009030 251 VHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVE-KDCKFL 329 (546)
Q Consensus 251 ~~~l~~~~~~~l~~cLr~Y~~ld~~~~ae~~~r~~vV~P~l~~ii~~~~l~~~~~~s~~~L~~~y~~il~fv~-~~~~~l 329 (546)
.+|+++ +...+.+|||+|++|+.++.||.+||..||+||+.++|+++.. .+||+||.++|++|++||. ++|+.+
T Consensus 213 ~eglqs-a~~~l~nclriYatld~t~~ae~lfr~~vvapyi~evI~eq~~----e~sp~gl~~~ykqilefv~~h~c~ll 287 (705)
T KOG2307|consen 213 AEGLQS-AAGDLQNCLRIYATLDLTESAESLFRLLVVAPYIAEVINEQHD----ETSPSGLLKLYKQILEFVKKHRCTLL 287 (705)
T ss_pred HHHhhc-cHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhc----cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999964 8899999999999999999999999999999999999999876 6899999999999999999 888888
Q ss_pred HHHhhhccCCCccccccccccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHh--hCCCHHHHHHHhhchhH
Q 009030 330 LDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEG--YCPSRSAVAKFRAEAIY 407 (546)
Q Consensus 330 l~it~~~~~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~--~c~S~~~v~~lR~~~~y 407 (546)
.+++....+|++|||||+||+|++|..+|++.||++|+||||++||+||++|++||++||+ .|+|+.+|.+||+||.|
T Consensus 288 re~tssdk~g~~~fdFlvnS~l~~ilt~iek~mps~f~Pgnp~~F~ekyk~t~DFl~~le~~~tC~s~~avt~~Rah~~~ 367 (705)
T KOG2307|consen 288 REMTSSDKRGLPGFDFLVNSLLTFILTFIEKCMPSVFVPGNPRLFHEKYKLTQDFLDNLESSHTCRSMLAVTKFRAHAIC 367 (705)
T ss_pred HHhchhhcCCCchHHHHHHHHHHHHHHHHHHhcccccCCCCcHHHHHHHHHHHHHHHhccccCcCchHHHHHHHHhhhHH
Confidence 8899777678999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHHhHHHhhcccccccccCCCCCCCCCcccchhhHHHHHHHHhhcccCCccccccchHHHH
Q 009030 408 VEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLR 487 (546)
Q Consensus 408 ~~f~~rWnLpVYFqLRfqEIa~~lE~aL~~~~~~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs~~VfL~~L~~rFwr 487 (546)
++||+|||||||||||||||||++|++|+ +.......+.++.+++.+|++.+|.++|+||.+||+||||||++.|||||
T Consensus 368 ~sF~kkwNl~VYFqlrfqeiag~ldaaLt-p~~~~d~l~d~~~Est~~l~l~as~a~~ealrrcWsddvylp~~vdKl~r 446 (705)
T KOG2307|consen 368 VSFMKKWNLPVYFQLRFQEIAGQLDAALT-PEMFADPLTDENRESTPQLHLGASRAIIEALRRCWSDDVYLPPIVDKLWR 446 (705)
T ss_pred HHHHHhcCcceeEeeeHHHHHHHHHHhcC-chhhcccccccccccCccchhhHhHHHHHHHHHHccccccchhhHHHHHH
Confidence 99999999999999999999999999998 55444444455556777999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCCCCCCCccccccCCCceEeeee
Q 009030 488 LSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYVRL 534 (546)
Q Consensus 488 LtLQllsRy~~Wi~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 534 (546)
||||+++||+.|++.. +..++ |.++ .| ++.++|+|||-
T Consensus 447 ltlQlllRysrwisai-tns~g---s~~s--kp---~trtqlvyv~h 484 (705)
T KOG2307|consen 447 LTLQLLLRYSRWISAI-TNSFG---SEKS--KP---ATRTQLVYVRH 484 (705)
T ss_pred HHHHHHHHHhHHHHHH-HhccC---CCCC--CC---cchhheeeeec
Confidence 9999999999999943 43332 2222 67 78899999994
No 2
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=100.00 E-value=1.5e-34 Score=263.86 Aligned_cols=133 Identities=38% Similarity=0.680 Sum_probs=47.8
Q ss_pred CccCcCCCCCCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHH
Q 009030 27 LWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLE 106 (546)
Q Consensus 27 l~F~~~~F~~~dFdvd~FLs~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~ 106 (546)
|||++++|+.|+||||+||.++|||+|||+||+||+.|++.|+++|++|||+||+|||+||++|+|++++|.+|+.||.+
T Consensus 1 lcf~~~~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~ 80 (133)
T PF06148_consen 1 LCFDKEEFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQ 80 (133)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred CCccccccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009030 107 LREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLI 159 (546)
Q Consensus 107 lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL 159 (546)
++++|.++++.+.+..+++++.|++|+.++..|+.+++++.+.++|+++|+||
T Consensus 81 ~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~~~~~~~kle~ll 133 (133)
T PF06148_consen 81 FREEVESVRDELDNTQEEIEDKLEERKELREEKALLKLLLDISESLEKLEDLL 133 (133)
T ss_dssp HHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-SSSSHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccC
Confidence 99999999999999999999999999999999999999999999999999986
No 3
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.11 E-value=2.7e-07 Score=106.64 Aligned_cols=304 Identities=19% Similarity=0.275 Sum_probs=193.7
Q ss_pred CCCCCCCCChHHHHh-hcc-CCCC---------hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhh
Q 009030 32 NLFLSPNFDSESYIS-ELR-TFVP---------FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRM 100 (546)
Q Consensus 32 ~~F~~~dFdvd~FLs-~~r-r~~s---------Le~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l 100 (546)
+.|..++|||-+|+. .++ ++-. +.+|-.-|+.|.+.++.+|=+-+.+=- .++--....|..|
T Consensus 3 s~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l-------~~~Pr~~~ev~~l 75 (766)
T PF10191_consen 3 SAFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQAL-------QRVPRVLREVDRL 75 (766)
T ss_pred hhhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccHHHHHHHHH
Confidence 679999999999997 444 2222 666777788888888888777665432 2333334444445
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcc
Q 009030 101 RAPLLELREKIDGFRGALEGSLV-------ALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFD 173 (546)
Q Consensus 101 ~~pL~~lr~~V~~~r~~v~~~~~-------~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL~~l~~~p~~~~~~~ 173 (546)
+.....++.++..++++++.+.. .+...=.-|.+++.++..|+---.-......+|.++..
T Consensus 76 ~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~------------ 143 (766)
T PF10191_consen 76 RQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFES------------ 143 (766)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc------------
Confidence 55555555555555544443322 22222122444555555554433333333334444321
Q ss_pred cchhhhhccCCCCCCCcccCCcccccchhHHHHHHHHHHHHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHhHHHHhh
Q 009030 174 VNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHG 253 (546)
Q Consensus 174 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~LeRiA~e~~~L~~~~~~~~~~pfv~~~~~RI~~i~~~L~~~L~~~~~~~ 253 (546)
..+..+|.-...++--..--++.|=....+..++..++.|...+...+.++
T Consensus 144 -----------------------------~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~a 194 (766)
T PF10191_consen 144 -----------------------------GDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVSPQLVQA 194 (766)
T ss_pred -----------------------------CCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 015556655555554444446788777778999999999999999999999
Q ss_pred hhhcCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHhhh---cCCCCCccccCCCcchHHHHHHHHHHHHHhhhHHHH
Q 009030 254 LEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKI---IPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLL 330 (546)
Q Consensus 254 l~~~~~~~l~~cLr~Y~~ld~~~~ae~~~r~~vV~P~l~~i---i~~~~l~~~~~~s~~~L~~~y~~il~fv~~~~~~ll 330 (546)
++.++.+...++..+|..||+...++..+.+.-..|..+.= ..... ..+-.+-|.+.|+.++..+..+++-..
T Consensus 195 l~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~----~~~~~~~L~~fyd~ll~~l~~E~~w~~ 270 (766)
T PF10191_consen 195 LNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSDQ----SQSFAEWLPSFYDELLSLLHQELKWCS 270 (766)
T ss_pred HHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888776552 22110 012345688999999999988887765
Q ss_pred HHhhhccCCCccccccccccHHHHHHHHH----hcCCccccCCCc----hHHHHHHHHHHHHHHHHHhhCCC
Q 009030 331 DISSAENSGLHVFDFLANSILKEVLSAIQ----KGKPGAFSPGRP----TQFLRNYKSSLDFLAYLEGYCPS 394 (546)
Q Consensus 331 ~it~~~~~~~~~~dfl~nsvw~ev~~~l~----~~l~~iFapG~P----d~F~~nY~~t~~Fl~~lE~~c~S 394 (546)
.+=... +. ++-.++.++...|. .++..+.....| .....-|.+|..|...++....+
T Consensus 271 ~vF~~~------~~-~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 271 QVFPDE------SP-VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS 335 (766)
T ss_pred HHcCCc------hh-HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443211 22 34444444444443 333333333333 56778899999999999996444
No 4
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.79 E-value=5.2e-06 Score=85.73 Aligned_cols=215 Identities=14% Similarity=0.228 Sum_probs=155.1
Q ss_pred CCCCCCCCChHHHHh-hccCC-CC---hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHH
Q 009030 32 NLFLSPNFDSESYIS-ELRTF-VP---FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLE 106 (546)
Q Consensus 32 ~~F~~~dFdvd~FLs-~~rr~-~s---Le~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~ 106 (546)
+.|-.++|||..|.- .+... .+ ++.++..|..|+..+...|+..|.+.|.+|+.=-+++..+.+.+..--.-+..
T Consensus 6 ~~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~ 85 (291)
T PF10475_consen 6 AIYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKN 85 (291)
T ss_pred HhhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667999998863 44444 44 45558899999999999999999999999999988988888888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcccchhhhhccCCCC
Q 009030 107 LREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSAT 186 (546)
Q Consensus 107 lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL~~l~~~p~~~~~~~~~~~~~~~~~~~~ 186 (546)
+|+.+..++..+....-.|-..-++|+.+..-...|+.+..+.+.-.+++.++.. . +-
T Consensus 86 ~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~--~-------------dy------- 143 (291)
T PF10475_consen 86 LRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEE--G-------------DY------- 143 (291)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-------------CH-------
Confidence 8888888888877644444444455666777777777777778888888888842 0 00
Q ss_pred CCCcccCCcccccchhHHHHHHHHHHHHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHhHHHHhhhhhcCHHHHHHHH
Q 009030 187 TFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCL 266 (546)
Q Consensus 187 s~~~~~~~~~~~~~~~~~LeRiA~e~~~L~~~~~~~~~~pfv~~~~~RI~~i~~~L~~~L~~~~~~~l~~~~~~~l~~cL 266 (546)
++ + |+ +..+..++ .....+..-++.+..+++.....+...|++.|......=|.+.=..++
T Consensus 144 ----------~~-A----l~-li~~~~~~---l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~ 204 (291)
T PF10475_consen 144 ----------PG-A----LD-LIEECQQL---LEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQ 204 (291)
T ss_pred ----------HH-H----HH-HHHHHHHH---HHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 00 1 11 11122221 122244556777888888888888888888888776666777888899
Q ss_pred HHHHHhcChhhHHHHHHHHhh
Q 009030 267 RAYAAIDNTRNAEEIFCNTVV 287 (546)
Q Consensus 267 r~Y~~ld~~~~ae~~~r~~vV 287 (546)
.+|..||++..+-+-+....+
T Consensus 205 ~AY~lLgk~~~~~dkl~~~f~ 225 (291)
T PF10475_consen 205 EAYQLLGKTQSAMDKLQMHFT 225 (291)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 999999998876655555443
No 5
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.58 E-value=4.7e-05 Score=86.12 Aligned_cols=291 Identities=15% Similarity=0.198 Sum_probs=169.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHH-HH-HHHHHHHhHHHHHHHHH
Q 009030 52 VPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREK-ID-GFRGALEGSLVALQNGL 129 (546)
Q Consensus 52 ~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~-V~-~~r~~v~~~~~~l~~~L 129 (546)
-+|+.....|......++.+.-+.||++|.||...-......-..+..+...+..+... +. .+...+.....+++..
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L- 88 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQEL- 88 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH-
Confidence 35677788999999999999999999999999987666666666666565555333222 22 2444444444443332
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhCCCCCCCCCCcccchhhhhccCCCCCCCcccCCcccccchhHHHH
Q 009030 130 KQRSEAASAREVL---ELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLE 206 (546)
Q Consensus 130 ~~R~~l~~~k~~L---~lll~~~~~v~klE~LL~~l~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~Le 206 (546)
+++++.....+ +.+..+++.+..++..+.. . .+.
T Consensus 89 --~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~----------------------------------------~-~~~ 125 (593)
T PF06248_consen 89 --KRELEENEQLLEVLEQLQEIDELLEEVEEALKE----------------------------------------G-NYL 125 (593)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------------------------C-CHH
Confidence 33444444333 3333334433333333321 0 133
Q ss_pred HHHHHHHHHHHHHHh-----cCCCcchHhHHHHHHHHHHHHHHHHhHHHHhhhh-----h-----------------cCH
Q 009030 207 RIASEMNRLKFYIAH-----AQNLPFIENMEKRIKSASLLLDASLGHCFVHGLE-----H-----------------QNA 259 (546)
Q Consensus 207 RiA~e~~~L~~~~~~-----~~~~pfv~~~~~RI~~i~~~L~~~L~~~~~~~l~-----~-----------------~~~ 259 (546)
.+|....+++..... +.+...+..+..++...+..|...|+..+...+. . .+.
T Consensus 126 ~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~ 205 (593)
T PF06248_consen 126 DAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSE 205 (593)
T ss_pred HHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCc
Confidence 344444444443332 2346777888999999999999999999988642 0 112
Q ss_pred --HHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHhhhcCCCCCcc----cc---------------CCCcchHHHHHHHH
Q 009030 260 --NVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEA----LA---------------GASGDELESDYEQI 318 (546)
Q Consensus 260 --~~l~~cLr~Y~~ld~~~~ae~~~r~~vV~P~l~~ii~~~~l~~----~~---------------~~s~~~L~~~y~~i 318 (546)
..|..+|.+...+|......+-|.+.++.=.+.-+|..+.... .. ......-..+|++|
T Consensus 206 ~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~PlI~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l 285 (593)
T PF06248_consen 206 SQESLQDVLQALEILGILDYKLKKFSKFLLEHIIKPLISHPSSIVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNL 285 (593)
T ss_pred ccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCcceEEEEeecccccccCCCHHHHHHHH
Confidence 2388999999999999888888877766544444433222100 00 01112346788887
Q ss_pred HHHHHhhhHHHHHHhhhccCCCccccccccccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHh
Q 009030 319 KQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEG 390 (546)
Q Consensus 319 l~fv~~~~~~ll~it~~~~~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~ 390 (546)
+.++..-...++...... ..-+..++..+||++.+.|.++.-.-=-|.+.+.+.. |....+-+..||.
T Consensus 286 ~~vf~fL~~~L~~~~~~~---~~l~~~~g~~i~~~ls~~lI~~~L~~aiP~~~~~l~~-f~~v~~~~~~Fe~ 353 (593)
T PF06248_consen 286 LLVFEFLHQHLLSLPSSD---SSLSESFGDHIWPRLSELLISNCLSPAIPTSASELQE-FEEVLESVEEFEE 353 (593)
T ss_pred HHHHHHHHHHhcccCCch---hHHHHHHHHHHHHHHHHHHHHhhCcCcCCCCHHHHHH-HHHHHHHHHHHHH
Confidence 766655444444221100 0235789999999999998876532233444444333 5555444444443
No 6
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=98.38 E-value=1.2e-05 Score=73.49 Aligned_cols=118 Identities=14% Similarity=0.283 Sum_probs=95.8
Q ss_pred CCCCCCCCChHHHHhhccC--------CCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHH
Q 009030 32 NLFLSPNFDSESYISELRT--------FVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAP 103 (546)
Q Consensus 32 ~~F~~~dFdvd~FLs~~rr--------~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~p 103 (546)
+.|+.|||||.+|.+++=. ..++.+-.+-|..=.+.|+++|=++|.++|.+.++--+.+...+..+..|+..
T Consensus 1 e~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~ 80 (132)
T PF10392_consen 1 EAFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSS 80 (132)
T ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5799999999999987755 66666666777777777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 104 LLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTF 149 (546)
Q Consensus 104 L~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~ 149 (546)
+..+...+..++.+|.+-.+.++....+=+.+.....+|+-...+.
T Consensus 81 v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l 126 (132)
T PF10392_consen 81 VESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFL 126 (132)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888765554455555555555433333
No 7
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=98.20 E-value=7.3e-06 Score=69.04 Aligned_cols=81 Identities=26% Similarity=0.497 Sum_probs=67.7
Q ss_pred CCCCCCChHHHHhhccCCCCh---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHH
Q 009030 34 FLSPNFDSESYISELRTFVPF---ETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREK 110 (546)
Q Consensus 34 F~~~dFdvd~FLs~~rr~~sL---e~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~ 110 (546)
|.+|+|||+.|+.+.-+..++ ..++..|+.-....+++|=.+|.++|.+||.-+..++.+...+..++.-|..+...
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999977666664 45567788888889999999999999999999999999888888888877777766
Q ss_pred HHHH
Q 009030 111 IDGF 114 (546)
Q Consensus 111 V~~~ 114 (546)
+..+
T Consensus 81 ~~~l 84 (87)
T PF08700_consen 81 IQSL 84 (87)
T ss_pred HHHh
Confidence 6544
No 8
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.65 E-value=0.018 Score=61.96 Aligned_cols=207 Identities=19% Similarity=0.274 Sum_probs=131.4
Q ss_pred CCCChHHHHhhcc----CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHH
Q 009030 37 PNFDSESYISELR----TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKID 112 (546)
Q Consensus 37 ~dFdvd~FLs~~r----r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~ 112 (546)
|||||.+||.++= .-..|+++...++.|...|.+++.+.|..- + +.| ..+.+.+...+..+.++-.+|.
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q-~---~~~---~~~~~~l~~a~~~i~~L~~~i~ 74 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQ-S---SSG---QDAEEDLEEAQEAIQELFEKIS 74 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-h---hcc---ccccccHHHHHHHHHHHHHHHH
Confidence 7999999999763 336688999999999999999999988762 1 222 3345566666666667777776
Q ss_pred HHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcccchhhhhccCCC
Q 009030 113 GFRGALEGSLVALQNGLKQ-------RSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSA 185 (546)
Q Consensus 113 ~~r~~v~~~~~~l~~~L~~-------R~~l~~~k~~L~lll~~~~~v~klE~LL~~l~~~p~~~~~~~~~~~~~~~~~~~ 185 (546)
.++..-++....|++--+. |+.|...=..|+.|......+.+|+.++.. ..
T Consensus 75 ~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~-r~--------------------- 132 (383)
T PF04100_consen 75 EIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKK-RQ--------------------- 132 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC---------------------
Confidence 6666666655555443333 444444445778777788888888888752 10
Q ss_pred CCCCcccCCcccccchhHHHHHHHHHHHHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHhHHHHhhhhh---c----C
Q 009030 186 TTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEH---Q----N 258 (546)
Q Consensus 186 ~s~~~~~~~~~~~~~~~~~LeRiA~e~~~L~~~~~~~~~~pfv~~~~~RI~~i~~~L~~~L~~~~~~~l~~---~----~ 258 (546)
.++. +..|. .+.+|--+-..-++.|-|.++..++..++..|...+-.-|...... . .
T Consensus 133 -----------Y~e~-a~~L~----av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~ 196 (383)
T PF04100_consen 133 -----------YKEI-ASLLQ----AVKELLEHFKPYKSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQS 196 (383)
T ss_pred -----------HHHH-HHHHH----HHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccch
Confidence 0001 12232 2233322333447899999999999999999888887777776421 1 1
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHhhh
Q 009030 259 ANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKI 294 (546)
Q Consensus 259 ~~~l~~cLr~Y~~ld~~~~ae~~~r~~vV~P~l~~i 294 (546)
...+..+=.+..+||.. +|+.+|.-|+...
T Consensus 197 ~~~l~~aC~vvd~L~~~------~r~~li~wf~~~q 226 (383)
T PF04100_consen 197 SQQLSDACLVVDALGPD------VREELIDWFCNKQ 226 (383)
T ss_pred HhHHHHHHHHHHHcCch------HHHHHHHHHHHHH
Confidence 22333322244455542 6677776666544
No 9
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0017 Score=69.93 Aligned_cols=100 Identities=17% Similarity=0.389 Sum_probs=78.5
Q ss_pred CCCCCCCCCCccCcCCCCCCCCChHHHHhhccCCCChHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHH
Q 009030 18 FSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSE---LQAHLSSLNHELIDLINRDYADFVNLSTKLVDVD 94 (546)
Q Consensus 18 ~~~p~~~~~l~F~~~~F~~~dFdvd~FLs~~rr~~sLe~Lr~d---Lr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d 94 (546)
.+.|.+|.| .+..+...++|||+.|+-+++|--||+.|-+. .-.--+.|.+-|-.||=+||..|++--..++-|.
T Consensus 14 ~g~pagpdp--lsptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk 91 (636)
T KOG2346|consen 14 LGLPAGPDP--LSPTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMK 91 (636)
T ss_pred cCCCCCCCC--CCccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHH
Confidence 345555444 46678899999999999999999999999764 4444566888999999999999999888888888
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH
Q 009030 95 AAVVRMRAPLLELREKIDGFRGALE 119 (546)
Q Consensus 95 ~~i~~l~~pL~~lr~~V~~~r~~v~ 119 (546)
.-+.+|-.++.++-+.+..+.+...
T Consensus 92 ~~f~~me~eMd~L~~~ms~i~~~s~ 116 (636)
T KOG2346|consen 92 SNFFGMEQEMDGLEEVMSSIQSKSD 116 (636)
T ss_pred hhhhhhcchhhhHHHHHHHHhhhhc
Confidence 8888888888777666555444443
No 10
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.3 Score=54.95 Aligned_cols=216 Identities=13% Similarity=0.125 Sum_probs=130.8
Q ss_pred CCCCCCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHH
Q 009030 32 NLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKI 111 (546)
Q Consensus 32 ~~F~~~dFdvd~FLs~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V 111 (546)
+.|.+..|+++.|-+.--.+..+.+-.+||..-+..++.+|=.=|=+--.+-+--.+.+--.|..++.++..+..++++|
T Consensus 51 s~fln~~fSv~~~tSas~~s~~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i 130 (797)
T KOG2211|consen 51 SSFLNTLFSVQMMTSASKESNRIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEI 130 (797)
T ss_pred cccccchhhhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 78999999999988743444444444444444444455555544445556666666777778888888888888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcccchhhhhccCCCCCCCcc
Q 009030 112 DGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPV 191 (546)
Q Consensus 112 ~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL~~l~~~p~~~~~~~~~~~~~~~~~~~~s~~~~ 191 (546)
..++..+.+..+.+..+-.+-..+..+..+|.. .-+..+|-+-|..+.+.+
T Consensus 131 ~riknd~~epyk~i~~kt~vl~rLhva~~lLrr----sgr~l~LskkL~~l~~~~------------------------- 181 (797)
T KOG2211|consen 131 KRIKNDNKEPYKIIWLKTMVLTRLHVAENLLRR----SGRALELSKKLASLNSSM------------------------- 181 (797)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccC-------------------------
Confidence 888888887777766654444555555555543 222223333333222211
Q ss_pred cCCcccccchhHHHHHHHHHHHHHHHHHHh--cCCCcchHhHHHHHHHHHHHHHHHHhHHHHhhhhhcCHHHHHHHHHHH
Q 009030 192 ENGTNVRETQSMLLERIASEMNRLKFYIAH--AQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAY 269 (546)
Q Consensus 192 ~~~~~~~~~~~~~LeRiA~e~~~L~~~~~~--~~~~pfv~~~~~RI~~i~~~L~~~L~~~~~~~l~~~~~~~l~~cLr~Y 269 (546)
.+.+.|+|.-.|.|-.+..- -.+..++++--.-+..+...+...--..+..+++++|+..+..-|.++
T Consensus 182 ----------~~d~traaq~lneLd~l~e~~dlsgIdvId~el~fv~~s~~evrN~a~~vLe~glq~~ne~qvgtglqvf 251 (797)
T KOG2211|consen 182 ----------VVDATRAAQTLNELDSLLEVLDLSGIDVIDKELMFVSNSSPEVRNKALPVLEAGLQSHNEQQVGTGLQVF 251 (797)
T ss_pred ----------CHhHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhcHHHHhhHHHHH
Confidence 11267777777777655432 133444444222333333444444445667788888888888889999
Q ss_pred HHhcChhhHHHHHHHHh
Q 009030 270 AAIDNTRNAEEIFCNTV 286 (546)
Q Consensus 270 ~~ld~~~~ae~~~r~~v 286 (546)
..+|....-...++...
T Consensus 252 ynfgtLekt~d~lv~~y 268 (797)
T KOG2211|consen 252 YNFGTLEKTADLLVSRY 268 (797)
T ss_pred HhcchHHHHHHHHHHhc
Confidence 98886554444444443
No 11
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=96.86 E-value=0.03 Score=51.81 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=72.6
Q ss_pred CCCCCCChHHHHhhcc--CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHH
Q 009030 34 FLSPNFDSESYISELR--TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKI 111 (546)
Q Consensus 34 F~~~dFdvd~FLs~~r--r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V 111 (546)
.+.++|+|-+..-++- ..+.++.-..+++...+.+...|=++||+.|++|-+==.+-..+-..|..-+.-+.++|+.+
T Consensus 16 ~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L 95 (142)
T PF04048_consen 16 MLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESL 95 (142)
T ss_pred HhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999998887654 44458899999999999999999999999999998765566666666666666777777777
Q ss_pred HHHHHHHHhHHHHHHH
Q 009030 112 DGFRGALEGSLVALQN 127 (546)
Q Consensus 112 ~~~r~~v~~~~~~l~~ 127 (546)
.+.+..+.....++++
T Consensus 96 ~~ak~~L~~~~~eL~~ 111 (142)
T PF04048_consen 96 QEAKSLLGCRREELKE 111 (142)
T ss_pred HHHHHHHhcCCHHHHH
Confidence 7777777666666554
No 12
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.46 Score=51.55 Aligned_cols=220 Identities=13% Similarity=0.164 Sum_probs=101.0
Q ss_pred CcCCCCCCCCChHHHHh-hccCCCChH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcc---cHHHHHHh
Q 009030 30 KSNLFLSPNFDSESYIS-ELRTFVPFE------TLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLV---DVDAAVVR 99 (546)
Q Consensus 30 ~~~~F~~~dFdvd~FLs-~~rr~~sLe------~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~---G~d~~i~~ 99 (546)
|-..|..+.||+.+++. +|..+++=+ .+-.-+|+|-..|+-.. +-||.-.++= =|..|- ...+....
T Consensus 2 Dlg~fSdekFda~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~-eeigaalEEq--Sggal~rmPRaakd~~~ 78 (828)
T KOG4182|consen 2 DLGAFSDEKFDAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAI-EEIGAALEEQ--SGGALARMPRAAKDSAA 78 (828)
T ss_pred CCccccccccCHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHH-HHHhHHHHHh--ccchHhhCchhhhHHHH
Confidence 34578899999999997 444444432 25555555555544332 2233322220 011111 12223444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcccchhhh
Q 009030 100 MRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEER 179 (546)
Q Consensus 100 l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL~~l~~~p~~~~~~~~~~~~~ 179 (546)
+|.+.-.++++|.+++-++..+..+-.+++..-..+...|..++.....-+--..+-+|+.. -++
T Consensus 79 Lq~Da~~Lq~kma~il~el~~aegesadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~---------------lED 143 (828)
T KOG4182|consen 79 LQADAHRLQEKMAAILLELAAAEGESADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAE---------------LED 143 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHH---------------HHH
Confidence 55555566666666665555555544555544333333333333211000000011222211 122
Q ss_pred hccCCCCCCCcccCCcccccchhHHHHHHHHHHHHHHHHHHhcCCCcchHhHHHHHHHHHH----HHHHHHhHHHHhhhh
Q 009030 180 KSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASL----LLDASLGHCFVHGLE 255 (546)
Q Consensus 180 ~~~~~~~s~~~~~~~~~~~~~~~~~LeRiA~e~~~L~~~~~~~~~~pfv~~~~~RI~~i~~----~L~~~L~~~~~~~l~ 255 (546)
++..+ .|.++|.-...|+.-......+|=..+.++.++..++ +.+-.|-.||.++
T Consensus 144 ~Fa~g-------------------DL~~aadkLaalqkcL~A~~elaefAe~qkQlE~~edRLEAlaqPrltda~a~~-- 202 (828)
T KOG4182|consen 144 GFARG-------------------DLKGAADKLAALQKCLHAQEELAEFAERQKQLEDFEDRLEALAQPRLTDAFAEG-- 202 (828)
T ss_pred HhhcC-------------------CchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCchHHHHHHcc--
Confidence 22111 1455555444444322111223322223444443333 3344455555544
Q ss_pred hcCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHH
Q 009030 256 HQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPL 290 (546)
Q Consensus 256 ~~~~~~l~~cLr~Y~~ld~~~~ae~~~r~~vV~P~ 290 (546)
+.+.--+.-.++..||+....|--+|.+-.+|+
T Consensus 203 --ktd~AQd~r~I~irIgRfkqLelqY~~Vq~k~i 235 (828)
T KOG4182|consen 203 --KTDQAQDFRQIFIRIGRFKQLELQYRAVQKKFI 235 (828)
T ss_pred --ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 334444555678899999988888777666554
No 13
>PF15469 Sec5: Exocyst complex component Sec5
Probab=96.02 E-value=0.97 Score=43.26 Aligned_cols=165 Identities=12% Similarity=0.188 Sum_probs=103.1
Q ss_pred HHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 70 HELIDLINRDYADFVNLSTKLVDVDAAVVRMRA------PLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLE 143 (546)
Q Consensus 70 ~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~------pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~ 143 (546)
++|-.||.+||..||+--..|..+-+.+..... ++..+.+.+..+..........+-+.=++-..++....+|+
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 578899999999999999999988888876664 57888888887777777766665543333344444444554
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCCcccchhhhhccCCCCCCCcccCCcccccchhHHHHHHHHHHHHHHHHHHhcC
Q 009030 144 LLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQ 223 (546)
Q Consensus 144 lll~~~~~v~klE~LL~~l~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~LeRiA~e~~~L~~~~~~~~ 223 (546)
-.--+.+.=.+|++.+.. + .-+.+..+|.+.+.+.....
T Consensus 82 r~~flF~LP~~L~~~i~~----------------------------------------~-dy~~~i~dY~kak~l~~~~~ 120 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKK----------------------------------------G-DYDQAINDYKKAKSLFEKYK 120 (182)
T ss_pred HHHHHHHhHHHHHHHHHc----------------------------------------C-cHHHHHHHHHHHHHHHHHhh
Confidence 444444444445444421 0 14456778888877766654
Q ss_pred -CCcchHhHHHHHHHHHHHHHHHHhHHHHhhhhhcCHHHHHHHHHHHHHhcChhh
Q 009030 224 -NLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRN 277 (546)
Q Consensus 224 -~~pfv~~~~~RI~~i~~~L~~~L~~~~~~~l~~~~~~~l~~cLr~Y~~ld~~~~ 277 (546)
..+.+.++-..++.+-..+...|-+-|.+.- .+.+....+.+..-.||-..+
T Consensus 121 ~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~--~s~~~~~~~i~~Ll~L~~~~d 173 (182)
T PF15469_consen 121 QQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP--SSQEEFLKLIRKLLELNVEED 173 (182)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCCC
Confidence 6677777666666665555555544444432 234445555555555555443
No 14
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=95.35 E-value=4.2 Score=42.94 Aligned_cols=92 Identities=22% Similarity=0.315 Sum_probs=64.6
Q ss_pred CChHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009030 52 VPFETLRS---ELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNG 128 (546)
Q Consensus 52 ~sLe~Lr~---dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~ 128 (546)
.+++.|.+ .|.+-.+.+..++-+|-+++|.-||.-+..+.+....+..+..-+..+..++.+..+..+......+
T Consensus 7 ~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~-- 84 (338)
T PF04124_consen 7 LSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQ-- 84 (338)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45566654 4667778899999999999999999999999888888888877777777777666655554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009030 129 LKQRSEAASAREVLELLLDTFH 150 (546)
Q Consensus 129 L~~R~~l~~~k~~L~lll~~~~ 150 (546)
++.+.|+....++..++
T Consensus 85 -----~~~~~r~~~~~~l~~~~ 101 (338)
T PF04124_consen 85 -----KISEERKKASLLLENHD 101 (338)
T ss_pred -----HHHHHHHHHHHHHHHHH
Confidence 33344444555444444
No 15
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=8.5 Score=45.13 Aligned_cols=130 Identities=18% Similarity=0.258 Sum_probs=103.9
Q ss_pred cCCCCCCCC---ChHHHHhhcc----------------CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcc
Q 009030 31 SNLFLSPNF---DSESYISELR----------------TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLV 91 (546)
Q Consensus 31 ~~~F~~~dF---dvd~FLs~~r----------------r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~ 91 (546)
++-|.+|+| ||.+|=+=+. +...-..||.-|..|+..+.--|+.=|-.--++|..-=+++.
T Consensus 199 Psiffk~dF~Lddp~TF~~V~~~id~t~~~~a~~~~~~~~~~~~~LQekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~ 278 (951)
T KOG2115|consen 199 PSIFFKSDFQLDDPATFHSVLPAIDLTLTKTAMNRQAERLEANSALQEKLSHYLDVVELHLAQEISKRSDSFFHAMTSLH 278 (951)
T ss_pred cchhcCCcccCCCcchHhhhccccccchhcccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 577888888 6777755332 445677899999999999999999999999999999999999
Q ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009030 92 DVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIK 160 (546)
Q Consensus 92 G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL~ 160 (546)
++.+.+.+=-.-+..+|+.+..+-...-.....+.+.-..|+....-++.|+++..+++.-.++.-++.
T Consensus 279 ~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~ 347 (951)
T KOG2115|consen 279 NLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLS 347 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 998887776677778888888777776666666666666677777777888888888887778877774
No 16
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=8.7 Score=44.00 Aligned_cols=385 Identities=16% Similarity=0.203 Sum_probs=207.9
Q ss_pred CCCCCCCCChHHHHhhcc----CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHH
Q 009030 32 NLFLSPNFDSESYISELR----TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLEL 107 (546)
Q Consensus 32 ~~F~~~dFdvd~FLs~~r----r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~l 107 (546)
+.|-+|+|+--+|++++= ....+|.|++-++.-...+.++|...|-.. +.....+.+.+.+.+..+..+
T Consensus 12 q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q-------~N~g~~~~e~l~da~~ai~eL 84 (793)
T KOG2180|consen 12 QMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQ-------ENSGTRGKENLADAQAAIEEL 84 (793)
T ss_pred HhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccccchhhhhHHHHHHHHHHH
Confidence 456669999999999763 456667777755555555666666655432 334445666777777777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcccchhhhh
Q 009030 108 REKIDGFRGALEGSLVALQNGLKQ-------RSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERK 180 (546)
Q Consensus 108 r~~V~~~r~~v~~~~~~l~~~L~~-------R~~l~~~k~~L~lll~~~~~v~klE~LL~~l~~~p~~~~~~~~~~~~~~ 180 (546)
-.++.++++.-++....|++--+. |+.+...=..|+.|-.....|++++.|+.. .+
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~k-r~---------------- 147 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSK-RS---------------- 147 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc----------------
Confidence 777777776666555555543333 344444445666665566667777777642 00
Q ss_pred ccCCCCCCCcccCCcccccchhHHHHHHHHHHHHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHhHHHHhhhhhcCH-
Q 009030 181 SMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNA- 259 (546)
Q Consensus 181 ~~~~~~s~~~~~~~~~~~~~~~~~LeRiA~e~~~L~~~~~~~~~~pfv~~~~~RI~~i~~~L~~~L~~~~~~~l~~~~~- 259 (546)
.++. ...|+- +++|--|-..-++.|=+.++..+|++++..|.+.+-.-|.++..+++.
T Consensus 148 ----------------y~e~-a~~lqa----i~~ll~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~ 206 (793)
T KOG2180|consen 148 ----------------YGEA-ASPLQA----ILQLLNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETH 206 (793)
T ss_pred ----------------HHHH-HhHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 1111 112332 222222333457899999999999999999999888878776653322
Q ss_pred --HHHHHHHH-HHHHhcChhhHHHHHHHHhhHHHHhhhcCCCC---CccccCCCcchHHHHHHHHHHHHHh---hhHHHH
Q 009030 260 --NVIYNCLR-AYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGP---SEALAGASGDELESDYEQIKQCVEK---DCKFLL 330 (546)
Q Consensus 260 --~~l~~cLr-~Y~~ld~~~~ae~~~r~~vV~P~l~~ii~~~~---l~~~~~~s~~~L~~~y~~il~fv~~---~~~~ll 330 (546)
....+.|. ++..+|. .+--+|+.+|+-|+++-+.+=- -+....++.+.+..-|.-+...+.. ..+++.
T Consensus 207 ~~~~~l~~l~daC~v~d~---lepsvreelIkwf~~qqL~ey~~IF~en~E~a~LDkidrRY~wfKr~L~~fe~k~~~iF 283 (793)
T KOG2180|consen 207 EEALLLQKLSDACLVVDA---LEPSVREELIKWFCSQQLEEYEQIFRENEEAASLDKLDRRYAWFKRLLRDFEEKWKPIF 283 (793)
T ss_pred CCccHHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHHHHHHHhccHhhhhhhhHHHHHHHHHHHHHHHHHhccccC
Confidence 11111111 1112221 1223567788888766432200 0011145667777778776655422 111111
Q ss_pred HHhhhccCCCccccccccccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHhhCC--------CHHHHH-HH
Q 009030 331 DISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCP--------SRSAVA-KF 401 (546)
Q Consensus 331 ~it~~~~~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~~c~--------S~~~v~-~l 401 (546)
....+.+..+. .-| +-+=......|++++ +.=-+-++|.---..|.+|=..|+...+ ...+.. .=
T Consensus 284 P~dW~v~~RLt-~eF--c~~Tr~~L~~Il~~~---~~~~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k 357 (793)
T KOG2180|consen 284 PADWHVAYRLT-IEF--CHQTRKQLESILKRR---KKEPDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPK 357 (793)
T ss_pred CcccchhHHHH-HHH--HHHHHHHHHHHHHHh---hhCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccc
Confidence 11111110000 000 011112223344433 2223446788888888999888887542 111110 00
Q ss_pred hhchhHHHHHHhh--ccchhHHHHHHHHHHhHHHhhcccccccccCCCCCCCCCcccchhhHHHHHHHHhhccc
Q 009030 402 RAEAIYVEFMKQW--NVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWR 473 (546)
Q Consensus 402 R~~~~y~~f~~rW--nLpVYFqLRfqEIa~~lE~aL~~~~~~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs 473 (546)
-..+-+....+-+ .|-+|+..-=|++...||.-.+.+.....+ ....+...-.++.+.-++.+.+.|-.
T Consensus 358 ~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p---~~~~~~~s~vlpSsadlF~~Ykkclt 428 (793)
T KOG2180|consen 358 ERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEP---KSNTDEESLVLPSSADLFVAYKKCLT 428 (793)
T ss_pred cccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCC---CCCcccccccCccHHHHHHHHHHHHH
Confidence 0001122222222 478999998899999999888744332111 01122335677888888888888876
No 17
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=93.06 E-value=22 Score=41.47 Aligned_cols=179 Identities=11% Similarity=0.161 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHhHHHHhhhhhcCHHHHHHHHHHHHHhcChhhHHHHHHH
Q 009030 205 LERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCN 284 (546)
Q Consensus 205 LeRiA~e~~~L~~~~~~~~~~pfv~~~~~RI~~i~~~L~~~L~~~~~~~l~~~~~~~l~~cLr~Y~~ld~~~~ae~~~r~ 284 (546)
..+.|.-..+|..+.......|-..+...+|+.....+-.+|=..|..+.+.+|...+.+|-++...++....+.+.|-.
T Consensus 74 ~~~~A~il~~L~~ls~~~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i~~fi~ 153 (710)
T PF07393_consen 74 PEEAAKILRNLLRLSKELSDIPGFEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCIDFFIN 153 (710)
T ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 44566666777766655547777788899999999999888888888888888999999999999999998888777765
Q ss_pred Hh---h-HHHHhh--hcC----CCCC---ccccCCCcchHHHHHHHHHHHHHhhhHHHHHHhhhccCCCccc-----ccc
Q 009030 285 TV---V-APLMQK--IIP----HGPS---EALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVF-----DFL 346 (546)
Q Consensus 285 ~v---V-~P~l~~--ii~----~~~l---~~~~~~s~~~L~~~y~~il~fv~~~~~~ll~it~~~~~~~~~~-----dfl 346 (546)
.- . ...+.. .+. +..+ +.........|..+|+.|...+..+...+-.+= .+..+.. .++
T Consensus 154 k~~~f~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VF---p~~~~Vm~~fiervf 230 (710)
T PF07393_consen 154 KHEFFIDEDQLDESNGFEDEEIWEKLSDPDSHPPINEESLDAFFEDIRDVINEESKIIDRVF---PNPEPVMQKFIERVF 230 (710)
T ss_pred hChhhhhhhhhccccccchhHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHH
Confidence 21 1 111100 000 0000 001122335789999999999988877665553 1111111 122
Q ss_pred ccccHHHHHHHHHhcCCccccCCCch----HHHHHHHHHHHHHHHHHhh
Q 009030 347 ANSILKEVLSAIQKGKPGAFSPGRPT----QFLRNYKSSLDFLAYLEGY 391 (546)
Q Consensus 347 ~nsvw~ev~~~l~~~l~~iFapG~Pd----~F~~nY~~t~~Fl~~lE~~ 391 (546)
.+.|-+.|...|..... ..+. .+|.-|..|.+|++.|...
T Consensus 231 ~~~I~~~i~~lL~~a~~-----~s~~~YLr~l~~~y~~t~~lv~~L~~~ 274 (710)
T PF07393_consen 231 EQVIQEYIESLLEEASS-----ISTLAYLRTLHGLYSQTKKLVDDLKEF 274 (710)
T ss_pred HHHHHHHHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23333333333332221 1444 4456688999999999987
No 18
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.13 E-value=4.2 Score=45.26 Aligned_cols=124 Identities=19% Similarity=0.336 Sum_probs=82.4
Q ss_pred ccCcCCCCCC--CC-ChHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHH
Q 009030 28 WFKSNLFLSP--NF-DSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPL 104 (546)
Q Consensus 28 ~F~~~~F~~~--dF-dvd~FLs~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL 104 (546)
-||.+.|+.. +| +-++.=.++|-| |..|+..+-+ .+|.---|-||= -+..|+|-.+|+.+..-++++|..+
T Consensus 32 dFdve~f~s~~R~~v~letLrddLrly--lksl~~aMie---LIN~DYADFVnL-StnLVgld~aln~i~qpL~qlreei 105 (705)
T KOG2307|consen 32 DFDVERFMSLARQKVDLETLRDDLRLY--LKSLQNAMIE---LINDDYADFVNL-STNLVGLDDALNKIEQPLNQLREEI 105 (705)
T ss_pred cCCHHHHHHHHhccCCHHHHHHHHHHH--HHHHHHHHHH---HHhhhHHHHHhh-hhhhccHHHHHHHHHhHHHHHHHHH
Confidence 3555555543 33 223332333322 3444544433 355666666663 3568999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 009030 105 LELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPS 164 (546)
Q Consensus 105 ~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL~~l~~ 164 (546)
.++|+-|.+....+++.+.+..+ -|+..+.-+.+.. +...|+||+++|...++
T Consensus 106 ~s~rgsV~ea~~alr~q~se~~~---~Re~k~~lldl~~----v~~~ieKL~k~L~s~ps 158 (705)
T KOG2307|consen 106 KSTRGSVGEAERALRQQCSELCS---NREKKIELLDLIY----VLVAIEKLSKMLLSPPS 158 (705)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHhcCCcc
Confidence 99999998877777766666554 4555566666666 46788899999876665
No 19
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=81.35 E-value=40 Score=35.45 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhHHHHhhhhhcCHHHHHHHHHHHHHhcChhhHHHHHHHHh
Q 009030 236 KSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTV 286 (546)
Q Consensus 236 ~~i~~~L~~~L~~~~~~~l~~~~~~~l~~cLr~Y~~ld~~~~ae~~~r~~v 286 (546)
+.++..|..-+.+-|.++.+.+|...+.++.++|-.||...++.+++-+-+
T Consensus 2 ~~~~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yi 52 (324)
T smart00762 2 DEARETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYI 52 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHH
Confidence 456788888899999999999999999999999999999999999887655
No 20
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.67 E-value=1.2e+02 Score=35.48 Aligned_cols=109 Identities=18% Similarity=0.281 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009030 53 PFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQR 132 (546)
Q Consensus 53 sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R 132 (546)
..+.+-..|...-..=..|+-++=|..|+||+.==+.|.++...+..++..+..+..++.++-.++-...+++-++=...
T Consensus 45 ~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~ 124 (800)
T KOG2176|consen 45 QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQS 124 (800)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777888899999999999866555555555555555555555555554444444444444433344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009030 133 SEAASAREVLELLLDTFHVVSKVEKLIKE 161 (546)
Q Consensus 133 ~~l~~~k~~L~lll~~~~~v~klE~LL~~ 161 (546)
+.|.++=.++.+++.+-+.++|+..++.+
T Consensus 125 rnit~ai~~l~~Cl~vLEl~sK~~e~~s~ 153 (800)
T KOG2176|consen 125 RNITEAIELLTLCLPVLELYSKLQEQMSE 153 (800)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777889999999999999888753
No 21
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.03 E-value=27 Score=41.08 Aligned_cols=108 Identities=19% Similarity=0.317 Sum_probs=74.1
Q ss_pred CCCCCCChHHHHhhccCCCChHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHH-----H
Q 009030 34 FLSPNFDSESYISELRTFVPFETLRSE---LQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPL-----L 105 (546)
Q Consensus 34 F~~~dFdvd~FLs~~rr~~sLe~Lr~d---Lr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL-----~ 105 (546)
|..++|+|.=||.+++.-.+.|+|+.- |..|.+.=+.-=..++|.|...||+==+.|-.+..++++..... .
T Consensus 166 l~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~ 245 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTT 245 (934)
T ss_pred cccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHH
Confidence 788999999999999999999999865 55556655666789999999999998888888888877743322 2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 106 ELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLEL 144 (546)
Q Consensus 106 ~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~l 144 (546)
.+..-++.+. ..+...-++.|+++.++..-|..|-+
T Consensus 246 ~l~n~i~~~~---s~ad~iF~~vl~Rk~~ADstRsvL~~ 281 (934)
T KOG2347|consen 246 KLENCIKNST---SRADLIFEDVLERKDKADSTRSVLGV 281 (934)
T ss_pred HHHHHHHHhh---hHHHHHHHHHHhcccccccHHHHHHH
Confidence 2333222222 22222335556666666666655554
No 22
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.53 E-value=1.5e+02 Score=33.61 Aligned_cols=109 Identities=21% Similarity=0.298 Sum_probs=73.9
Q ss_pred ChHHHHhhccCCCChHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHH
Q 009030 40 DSESYISELRTFVPFETLRSE---LQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRG 116 (546)
Q Consensus 40 dvd~FLs~~rr~~sLe~Lr~d---Lr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~ 116 (546)
+.+.||.++ ..-++|.|+++ |.+=.+.+..++-+|-=.||-.|+..+.+....-+...+++.++.++--++-....
T Consensus 20 ~~~~~v~~l-~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s 98 (581)
T KOG2069|consen 20 EMDAYVREL-TTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTS 98 (581)
T ss_pred hhHHHHHHH-cCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhh
Confidence 456788874 34457777654 67777889999999999999999999988888888888888888776654444444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 117 ALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVE 156 (546)
Q Consensus 117 ~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE 156 (546)
...+-. .....+.+.+.+-.++++.+..+..+-
T Consensus 99 ~~~~f~-------~~~~~i~e~~~~~~~~l~~~~~l~ell 131 (581)
T KOG2069|consen 99 PCKRFQ-------DFAEEISEHRRLNSLTLDKHPQLLELL 131 (581)
T ss_pred HHHHHH-------HHHHHhhHhHHHHHHHHhhcchhHHHH
Confidence 433333 344555566655555555454443333
No 23
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.46 E-value=70 Score=33.63 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=13.5
Q ss_pred CCChHHHHHHHHHHHHHHHHH
Q 009030 51 FVPFETLRSELQAHLSSLNHE 71 (546)
Q Consensus 51 ~~sLe~Lr~dLr~y~~~L~~e 71 (546)
-.-++.|...|......|++.
T Consensus 139 ~kllegLk~~L~~~~~~l~~D 159 (312)
T smart00787 139 MKLLEGLKEGLDENLEGLKED 159 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334777777777777666654
No 24
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=72.29 E-value=1.5e+02 Score=33.74 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcc-------cHHHHHHhhhHHHHHHHHHHHHHHHHHHhH---HHHHHHH
Q 009030 59 SELQAHLSSLNHELIDLINRDYADFVNLSTKLV-------DVDAAVVRMRAPLLELREKIDGFRGALEGS---LVALQNG 128 (546)
Q Consensus 59 ~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~-------G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~---~~~l~~~ 128 (546)
++||.|.+.+++++-+.=++--+||+..|.++. ..|..+++|..-|.+|+.++...-+++... ..+|+-.
T Consensus 46 ~~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~ 125 (683)
T KOG1961|consen 46 DDLREYSKQVENELRKAERKSIQDYIKESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLR 125 (683)
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 478999999999999999988888887776554 566677777777777777776666554432 3334444
Q ss_pred HHHHH
Q 009030 129 LKQRS 133 (546)
Q Consensus 129 L~~R~ 133 (546)
|+.|+
T Consensus 126 L~Nrq 130 (683)
T KOG1961|consen 126 LENRQ 130 (683)
T ss_pred HHhHH
Confidence 44443
No 25
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=68.00 E-value=62 Score=29.48 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=24.2
Q ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009030 92 DVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQR 132 (546)
Q Consensus 92 G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R 132 (546)
++.++++.+..-|.++-+.|...|..+...++.+..+|++-
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~ 80 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQ 80 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45555555666666666666666666666666665555553
No 26
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=64.29 E-value=1.3e+02 Score=28.55 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 009030 56 TLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVA 124 (546)
Q Consensus 56 ~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~ 124 (546)
.=.++++.|...+..++-++.+..|.+= ..+....+.+..+......+.+++...+.++.+...+
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~ 159 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELR----ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREE 159 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444432 3444455555555555555555555554333333333
No 27
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=64.00 E-value=36 Score=35.84 Aligned_cols=52 Identities=8% Similarity=0.142 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhHHHHhhhhhcCHHHHHHHHHHHHHhcChhhHHHHHHHHhh
Q 009030 236 KSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVV 287 (546)
Q Consensus 236 ~~i~~~L~~~L~~~~~~~l~~~~~~~l~~cLr~Y~~ld~~~~ae~~~r~~vV 287 (546)
+.++..|..-+.+.|.++.+.+|...+.++-++|-.||..+++.+++-+-|.
T Consensus 2 ~~a~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc 53 (331)
T PF08318_consen 2 DEARESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLC 53 (331)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Confidence 4567788888889999999999999999999999999999999999987664
No 28
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=63.09 E-value=1.8e+02 Score=32.48 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=33.6
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHHHhhccc
Q 009030 364 GAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVG 417 (546)
Q Consensus 364 ~iFapG~Pd~F~~nY~~t~~Fl~~lE~~c~S~~~v~~lR~~~~y~~f~~rWnLp 417 (546)
.||. |+++.|.+.+..+..++..|...+...... ++..+... .++|+++
T Consensus 170 ~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~w~~~ 218 (579)
T PF08385_consen 170 DLFS-GDYDEFIKKLNECIDILESWKETYEEFREQ--IRELTRKR--SHPWEFD 218 (579)
T ss_pred hhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccccc--CCCCccc
Confidence 3777 899999999999999999999866543322 21111111 1789998
No 29
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.83 E-value=2e+02 Score=31.38 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=14.1
Q ss_pred hcCC-CcchHhHHHHHHHHH
Q 009030 221 HAQN-LPFIENMEKRIKSAS 239 (546)
Q Consensus 221 ~~~~-~pfv~~~~~RI~~i~ 239 (546)
+.++ ...++..+.||.+++
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 4444 357788899999998
No 30
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=61.11 E-value=1.6e+02 Score=29.81 Aligned_cols=86 Identities=21% Similarity=0.357 Sum_probs=38.5
Q ss_pred CCccCcCCCCCCCCChHHHHhhccCCCChHHHHHHHHHHH---HHHHHHHHHHHhh----hHHHHHHhhcCcccHHHHHH
Q 009030 26 PLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHL---SSLNHELIDLINR----DYADFVNLSTKLVDVDAAVV 98 (546)
Q Consensus 26 ~l~F~~~~F~~~dFdvd~FLs~~rr~~sLe~Lr~dLr~y~---~~L~~eLveLIN~----DY~DFV~Lss~L~G~d~~i~ 98 (546)
|+|. +....|=....+.. .|-.++.+|.... +.|+.++-+++.. +...-..+-..+......+.
T Consensus 3 ~iC~----~~~~~~~C~~C~~~-----~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 73 (302)
T PF10186_consen 3 PICH----NSRRRFYCANCVNN-----RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLE 73 (302)
T ss_pred CCCC----CCCCCeECHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5566 44445656666653 1555555544432 3344444444441 23333333333334444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 009030 99 RMRAPLLELREKIDGFRGALEG 120 (546)
Q Consensus 99 ~l~~pL~~lr~~V~~~r~~v~~ 120 (546)
.++.-+...+++|...+..+.+
T Consensus 74 ~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 74 RLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.63 E-value=1.5e+02 Score=31.20 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH------HHHHhhhHHHHH
Q 009030 50 TFVPFETLRSELQAHLSSLNHEL------IDLINRDYADFV 84 (546)
Q Consensus 50 r~~sLe~Lr~dLr~y~~~L~~eL------veLIN~DY~DFV 84 (546)
|..-++.|+..|......|++.. ++.||.-+.+-.
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~ 183 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLR 183 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777776543 344454444433
No 32
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=59.53 E-value=3e+02 Score=30.92 Aligned_cols=122 Identities=20% Similarity=0.194 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCC-CHHHHHHHhhchhHHHHHHhhccch---hHHH-------HHHHHHHhHHHhhcccccc
Q 009030 373 QFLRNYKSSLDFLAYLEGYCP-SRSAVAKFRAEAIYVEFMKQWNVGV---YFSL-------RFQEIAGALDSALTAASLA 441 (546)
Q Consensus 373 ~F~~nY~~t~~Fl~~lE~~c~-S~~~v~~lR~~~~y~~f~~rWnLpV---YFqL-------RfqEIa~~lE~aL~~~~~~ 441 (546)
.|-+-+...++|+..+=..|. .-.-+..+|=...|...++|=+.|| ||.- ||+.|...==+++......
T Consensus 325 If~~t~~~~~~~~~~~l~~~~D~iglll~Irl~~~~~~~~~~R~ip~ld~y~~~~~~~LWprF~~i~d~nieSlk~~~~~ 404 (508)
T PF04129_consen 325 IFEPTFSLLQEFTEQLLSNSYDAIGLLLCIRLNQRYQFEMQRRRIPVLDSYLNSLLMLLWPRFQKIMDANIESLKKADPK 404 (508)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 355666666677766544443 3344555566666777777767665 5553 6777654222222211100
Q ss_pred cccCCCCCCCCCcccchhhHHHHHHHHhhccc---CCccccccchHHHHHHHHHHHHHHHH
Q 009030 442 PVQNSNSNQGNSQALTLKQSVTLLDSMKSCWR---QDVFLLPCSDKFLRLSLQLLSRYSNW 499 (546)
Q Consensus 442 ~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs---~~VfL~~L~~rFwrLtLQllsRy~~W 499 (546)
... .......+.......+..+|..+=. ++. +.++-.|.....-.++.|.+.=
T Consensus 405 ~~~----~~~~~PH~itrRyaef~~sll~L~~~~~~~~-~~~~l~~L~~~~~~ll~~~s~~ 460 (508)
T PF04129_consen 405 KLG----SIDTRPHYITRRYAEFLSSLLKLSSEHPDEQ-LEPSLNRLRREVEDLLTRLSKE 460 (508)
T ss_pred ccc----cCccCChHHHHHHHHHHHHHHHHhccCchhh-HHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0011124455556666666655422 222 5556666666666667666543
No 33
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.03 E-value=1.4e+02 Score=30.89 Aligned_cols=104 Identities=20% Similarity=0.372 Sum_probs=51.8
Q ss_pred ChHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHH-----HHHhh--hHHHHHHHHHH
Q 009030 40 DSESYISELR-TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDA-----AVVRM--RAPLLELREKI 111 (546)
Q Consensus 40 dvd~FLs~~r-r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~-----~i~~l--~~pL~~lr~~V 111 (546)
+|++||.=+. +-|..--||.-|++--..|.. +| .+-..|=+.|--|.+ ...++ |-.|.+.|+||
T Consensus 55 ~PEQYLTPLQQKEV~iRHLkakLkes~~~l~d-------Re-tEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEI 126 (305)
T PF15290_consen 55 NPEQYLTPLQQKEVCIRHLKAKLKESENRLHD-------RE-TEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEI 126 (305)
T ss_pred CHHHhcChHHHHHHHHHHHHHHHHHHHHHHHh-------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999997553 444444444444433222221 11 223333333333322 12222 23556666777
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009030 112 DGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIK 160 (546)
Q Consensus 112 ~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL~ 160 (546)
+..|..|+.+. +.|.++ -|-..+...+|.-.=.|||.||.
T Consensus 127 kQLkQvieTmr----ssL~ek-----DkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 127 KQLKQVIETMR----SSLAEK-----DKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HHHHHHHHHHH----hhhchh-----hhhHHHHHhhhhhhHhHHHHHHH
Confidence 66666655333 333333 23345556666777778999886
No 34
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=56.02 E-value=1.1e+02 Score=25.67 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=14.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009030 93 VDAAVVRMRAPLLELREKIDGFRGALEGSLVALQ 126 (546)
Q Consensus 93 ~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~ 126 (546)
..+.+.+++.-+..+++++.....++.+.....+
T Consensus 24 l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n 57 (90)
T PF06103_consen 24 LKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTN 57 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 35
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=54.85 E-value=84 Score=28.91 Aligned_cols=76 Identities=13% Similarity=0.254 Sum_probs=70.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 009030 49 RTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVA 124 (546)
Q Consensus 49 rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~ 124 (546)
++...++.+++.+..-++.+=++=.+-.|+--+.|-.+++.+.+-.+.|..++.-|..-+..+...+.++.+...+
T Consensus 40 ~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~ 115 (142)
T PF04048_consen 40 HRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQR 115 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3566789999999999999999999999999999999999999999999999999999999999999999987765
No 36
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=54.67 E-value=1.3e+02 Score=25.43 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 009030 54 FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVA 124 (546)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~ 124 (546)
|+.|...+..|...+...+ . .-+-.++.+...-+..++..|...+.-+..++.++...+..+.....+
T Consensus 21 l~~L~~~~~~~~~~~~~~~-~--~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 21 LEQLQQERQEYQEQLSESQ-Q--GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHT------S--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc-C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444 1 233355555555556666666666666666666666555555554443
No 37
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=50.89 E-value=4.4e+02 Score=30.35 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=39.8
Q ss_pred CcchHHHHHHHHHHHHHhhhHHHHHHhhhccCCCccccccccccHHHHHHHHHhcCCccccCCCc
Q 009030 307 SGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRP 371 (546)
Q Consensus 307 s~~~L~~~y~~il~fv~~~~~~ll~it~~~~~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~P 371 (546)
++..+.--|.++++-+..++-.+..+-....++.+-+..++..||..+.+.|.+..-.+-.|-+.
T Consensus 279 s~a~~f~~v~~VlEsl~l~Lh~l~~~e~evt~~~~~~emigDhi~e~l~~~l~k~cl~~avP~~s 343 (719)
T KOG2163|consen 279 SKADKFIDVAKVLESLELKLHVLHSHELEVTTGKTFTEMIGDHIEEQLITMLLKDCLAIAVPVTS 343 (719)
T ss_pred chHhhhhHHHHHHHHhhhcccccccchhhhcccchHHHHHhHHHHHHHHHHHHHhhcccccCCcc
Confidence 44555556677777665333222222122234566788999999999999998877545555333
No 38
>PF09033 DFF-C: DNA Fragmentation factor 45kDa, C terminal domain; InterPro: IPR015121 The C-terminal domain of DNA fragmentation factor 45 kDa (DFF-C) consists of four alpha-helices, which are folded in a helix-packing arrangement, with alpha-2 and alpha-3 packing against a long C-terminal helix (alpha-4). The main function of this domain is the inhibition of DFF40 by binding to its C-terminal catalytic domain through ionic interactions, thereby inhibiting the fragmentation of DNA in the apoptotic process. In addition to blocking the DNase activity of DFF40, the C-terminal region of DFF45 is also important for the DFF40-specific folding chaperone activity, as demonstrated by the ability of DFF45 to refold DFF40 []. ; PDB: 1KOY_A 1IYR_A.
Probab=49.74 E-value=5.5 Score=37.11 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 100 MRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDT 148 (546)
Q Consensus 100 l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~ 148 (546)
|-+|-..+-.++.....+++...+.++..|.+|.+.|..|.+|+++|+.
T Consensus 52 iDvpcsdLA~el~qs~~k~q~LQ~TLQqVLDrREE~RQSkqLLeLYL~A 100 (164)
T PF09033_consen 52 IDVPCSDLAQELGQSCAKVQGLQNTLQQVLDRREEERQSKQLLELYLQA 100 (164)
T ss_dssp -------------------------------------------------
T ss_pred hCCChHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888888888899999999999999999999999999996643
No 39
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=47.84 E-value=4.9e+02 Score=29.99 Aligned_cols=88 Identities=17% Similarity=0.374 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009030 56 TLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEA 135 (546)
Q Consensus 56 ~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l 135 (546)
.||.|++..+=..+.+.++ +|=.+-..|..+...|+.|..--.++.+++...+.......+++...-++++.+
T Consensus 20 ~LR~~iE~~~l~~~~~~L~-------~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~ 92 (618)
T PF06419_consen 20 NLRSDIEKRLLKINQEFLK-------EFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEEL 92 (618)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666655555555543 466677777788888888888888888888888888888888888888888999
Q ss_pred HHHHHHHHHHHHHHH
Q 009030 136 ASAREVLELLLDTFH 150 (546)
Q Consensus 136 ~~~k~~L~lll~~~~ 150 (546)
+.+|+++..+++-+.
T Consensus 93 ~~k~~ll~~f~~~f~ 107 (618)
T PF06419_consen 93 ELKKKLLDAFLERFT 107 (618)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999998887664443
No 40
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=47.60 E-value=2.2e+02 Score=28.62 Aligned_cols=55 Identities=24% Similarity=0.221 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Q 009030 107 LREKIDGFRGALEGSLVALQNGLKQRSEAASAR-EVLELLLDTFHVVSKVEKLIKE 161 (546)
Q Consensus 107 lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k-~~L~lll~~~~~v~klE~LL~~ 161 (546)
++.+|...-..++....-|++.-+++..|...| +.++.|.+|..=+..||..+..
T Consensus 16 ~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 16 LKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555666655444 4677777888888889988854
No 41
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=46.67 E-value=1.3e+02 Score=25.53 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 009030 56 TLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEG 120 (546)
Q Consensus 56 ~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~ 120 (546)
.++...-..+..=+.+|.++++.==+-|-.+......+-+.+.+|+..|..+.++|..++..+..
T Consensus 18 ~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 18 ALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777778888888665555588888889999999999999999999988888777653
No 42
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=46.08 E-value=3e+02 Score=31.83 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=33.4
Q ss_pred hHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009030 79 DYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQ 126 (546)
Q Consensus 79 DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~ 126 (546)
+..++-.|-..+...+..+..++.-+..+..++...+..++....++.
T Consensus 419 ~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 419 SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777777777777777777777777777777777666555543
No 43
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.94 E-value=5.6e+02 Score=30.07 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhcCHHHHHHHHHHHHHhcChhhHHHHHHHHh---hHHHHhhh
Q 009030 232 EKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTV---VAPLMQKI 294 (546)
Q Consensus 232 ~~RI~~i~~~L~~~L~~~~~~~l~~~~~~~l~~cLr~Y~~ld~~~~ae~~~r~~v---V~P~l~~i 294 (546)
-+-+..++..|..-+..-|.++.+++|...+.+..++|-.||...+.-+.+-.-+ |+-.-+++
T Consensus 182 ~~~L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc~iIA~kar~~ 247 (773)
T KOG0412|consen 182 YETLKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLCQIIASKARKN 247 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888899999999999999999999999998877766533 44444443
No 44
>PRK02224 chromosome segregation protein; Provisional
Probab=45.17 E-value=3.7e+02 Score=31.99 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHH-HhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 009030 60 ELQAHLSSLNHELIDL-INRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEG 120 (546)
Q Consensus 60 dLr~y~~~L~~eLveL-IN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~ 120 (546)
++...+..+++.+=+| -+=|.++|=.|...+......+..+..-+..++.++......+..
T Consensus 624 ~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~ 685 (880)
T PRK02224 624 ERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA 685 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333 112334455666666666666666666566555555555554443
No 45
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.10 E-value=51 Score=25.79 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=14.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 009030 96 AVVRMRAPLLELREKIDGFRGALEGSLVAL 125 (546)
Q Consensus 96 ~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l 125 (546)
.|+.|...+..+..+|..+...+..+..++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455544444444444444443
No 46
>PRK03918 chromosome segregation protein; Provisional
Probab=44.15 E-value=3.6e+02 Score=31.99 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=24.2
Q ss_pred HHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhH
Q 009030 81 ADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGS 121 (546)
Q Consensus 81 ~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~ 121 (546)
.++-.+-..+......+..+..-+..++.++...+..++..
T Consensus 659 ~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556656666666666666666666666666555555544
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.94 E-value=4.2e+02 Score=27.80 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 009030 54 FETLRSELQAHLSSLNHELIDLINR-------DYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVA 124 (546)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~-------DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~ 124 (546)
+..+..+|+.+.+.|..++-.|-+. |=...-.+-..|...+..|+..+.-+.+++.++......+++....
T Consensus 175 l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 175 LDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555443 3333444444555555555555555555555555555544444433
No 48
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=42.16 E-value=2.7e+02 Score=25.54 Aligned_cols=13 Identities=8% Similarity=0.368 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHh
Q 009030 147 DTFHVVSKVEKLI 159 (546)
Q Consensus 147 ~~~~~v~klE~LL 159 (546)
++..++++|..+|
T Consensus 105 ~~v~~ie~LN~~L 117 (131)
T PF10158_consen 105 QTVPSIETLNEIL 117 (131)
T ss_pred HHHHHHHHHHhhC
Confidence 3555555666665
No 49
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=41.98 E-value=86 Score=24.45 Aligned_cols=30 Identities=7% Similarity=0.222 Sum_probs=14.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhHH
Q 009030 93 VDAAVVRMRAPLLELREKIDGFRGALEGSL 122 (546)
Q Consensus 93 ~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~ 122 (546)
++..+.++..-+..+|++.++++..+++..
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555554333
No 50
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=41.84 E-value=92 Score=28.38 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=17.8
Q ss_pred hcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 009030 87 STKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVA 124 (546)
Q Consensus 87 ss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~ 124 (546)
+..|.++|..+++...-..+++++|.+++..++....+
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~d 104 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDD 104 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34444455555544444444444444444444443333
No 51
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=41.41 E-value=4.5e+02 Score=27.69 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009030 56 TLRSELQAHLSSLNHELIDLINRDYAD----FVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQ 131 (546)
Q Consensus 56 ~Lr~dLr~y~~~L~~eLveLIN~DY~D----FV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~ 131 (546)
-|-++|..-+..|+.|-++|=|.-=++ +-.|-..|..+.......+.-|.+++++--.....++...+.|-+.|.+
T Consensus 106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~K 185 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWK 185 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666665544432 2245555555555555566666666666555666666666666666666
Q ss_pred H-HHHHHHHHHHHH
Q 009030 132 R-SEAASAREVLEL 144 (546)
Q Consensus 132 R-~~l~~~k~~L~l 144 (546)
| .++...|+.|+.
T Consensus 186 qm~~l~~eKr~Lq~ 199 (310)
T PF09755_consen 186 QMDKLEAEKRRLQE 199 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 6 556666665553
No 52
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=41.29 E-value=99 Score=25.64 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=32.0
Q ss_pred cCHHHHHHHHHHHHHhcChhhHHHHHHHHh-------hHHHHhhhcCC
Q 009030 257 QNANVIYNCLRAYAAIDNTRNAEEIFCNTV-------VAPLMQKIIPH 297 (546)
Q Consensus 257 ~~~~~l~~cLr~Y~~ld~~~~ae~~~r~~v-------V~P~l~~ii~~ 297 (546)
..++...+||..|..=-.+.+.+.-++..+ +-|++.++|+.
T Consensus 19 ~Er~~f~h~Ln~Y~~~RnV~~Lv~sL~~vLd~P~KrqllplLr~vIP~ 66 (78)
T cd07356 19 AEREEFIHCLNDYHAKRNVYDLVQSLKVVLDTPEKRQLLPLLRLVIPR 66 (78)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCHhHhHHHHHHHHHccc
Confidence 456789999999998777777777777655 66888888875
No 53
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=40.55 E-value=78 Score=24.34 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009030 52 VPFETLRSELQAHLSSLNHELIDLINRDYADFV 84 (546)
Q Consensus 52 ~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV 84 (546)
.+.+.-.+.|+.-+..=++|+++-||..|+.-+
T Consensus 7 ~~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~kiL 39 (56)
T PF08112_consen 7 STIDKYISILKSKLDEKKSEILSNLNMEYEKIL 39 (56)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777888888899999999999998654
No 54
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=39.96 E-value=3.3e+02 Score=26.98 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=13.6
Q ss_pred HHHHHHHHHH-HHhhhHHHHHHhh
Q 009030 65 LSSLNHELID-LINRDYADFVNLS 87 (546)
Q Consensus 65 ~~~L~~eLve-LIN~DY~DFV~Ls 87 (546)
+..+-.|||| |||+|-+..+.-|
T Consensus 20 lE~i~kelie~l~~~~~qk~l~~g 43 (272)
T KOG4552|consen 20 LEHIVKELIETLINRDKQKMLKNG 43 (272)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhcc
Confidence 3445566665 6777777655443
No 55
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.54 E-value=4.4e+02 Score=33.28 Aligned_cols=96 Identities=13% Similarity=0.244 Sum_probs=64.1
Q ss_pred CCccCcCCCCCCCCChHHHHhhcc-CCC----ChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh-cCcccHHHHHHh
Q 009030 26 PLWFKSNLFLSPNFDSESYISELR-TFV----PFETLRSELQAHLSSLNHELIDLINRDYADFVNLS-TKLVDVDAAVVR 99 (546)
Q Consensus 26 ~l~F~~~~F~~~dFdvd~FLs~~r-r~~----sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Ls-s~L~G~d~~i~~ 99 (546)
||| .-.|..+.. .+.|+.++. .-- ..+.+..++...-+.+.+ +.-++.+|..+..+. ..+....+.+..
T Consensus 681 ~LC--~R~f~~eee-~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~--l~~l~~~~~~~~~l~~~eip~l~~~l~~ 755 (1311)
T TIGR00606 681 PVC--QRVFQTEAE-LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDE--MLGLAPGRQSIIDLKEKEIPELRNKLQK 755 (1311)
T ss_pred CCC--CCCCCChhH-HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHhhchhHHHHHHH
Confidence 666 344555544 578887765 222 345555555544433333 556788999999996 789999999888
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009030 100 MRAPLLELREKIDGFRGALEGSLVALQ 126 (546)
Q Consensus 100 l~~pL~~lr~~V~~~r~~v~~~~~~l~ 126 (546)
+..-+..++.++......+.....+++
T Consensus 756 le~~l~~~~~~le~~~~~l~~~~~~~~ 782 (1311)
T TIGR00606 756 VNRDIQRLKNDIEEQETLLGTIMPEEE 782 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 888888888777777777766655553
No 56
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=39.46 E-value=3.4e+02 Score=25.67 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=18.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH
Q 009030 51 FVPFETLRSELQAHLSSLNHELIDLI 76 (546)
Q Consensus 51 ~~sLe~Lr~dLr~y~~~L~~eLveLI 76 (546)
...+..|..+++.|......-....+
T Consensus 39 ~~~~~~l~~~~~~~~~~~~~~~~~~~ 64 (229)
T PF03114_consen 39 EESIKKLQKSLKKYLDSIKKLSASQK 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 34567788888888887777666655
No 57
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=39.03 E-value=1.5e+02 Score=24.82 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=9.9
Q ss_pred HHHHHHHhhhHHHHHHhh
Q 009030 70 HELIDLINRDYADFVNLS 87 (546)
Q Consensus 70 ~eLveLIN~DY~DFV~Ls 87 (546)
+||+|-|..+|....+-.
T Consensus 3 ~elLd~ir~Ef~~~~~e~ 20 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEA 20 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666666655544433
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.64 E-value=3.5e+02 Score=25.65 Aligned_cols=67 Identities=22% Similarity=0.241 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009030 58 RSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNG 128 (546)
Q Consensus 58 r~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~ 128 (546)
-.++...++.+.+++.++=+.-++-.-.+ ....+.....+.-+...++++...+..+.+...++.+.
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESEL----EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777776655554433222 22333333333334444455555555555444444443
No 59
>PRK11637 AmiB activator; Provisional
Probab=38.44 E-value=3.5e+02 Score=29.47 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=19.0
Q ss_pred CcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009030 89 KLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQ 126 (546)
Q Consensus 89 ~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~ 126 (546)
.|...+..|..+..-+..+..++.....++.....+|.
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554444433
No 60
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=38.14 E-value=7.6e+02 Score=29.42 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009030 52 VPFETLRSELQAHLSSLNHELIDLINRDYADFV 84 (546)
Q Consensus 52 ~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV 84 (546)
..+..--+|++.|++...+++-.++++||....
T Consensus 176 ~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~ 208 (806)
T PF05478_consen 176 NTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELK 208 (806)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356666789999999999999999999998864
No 61
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=38.07 E-value=6.1e+02 Score=28.27 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHHHhhccchhHHHHHHHHHHhHHHhhc
Q 009030 369 GRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALT 436 (546)
Q Consensus 369 G~Pd~F~~nY~~t~~Fl~~lE~~c~S~~~v~~lR~~~~y~~f~~rWnLpVYFqLRfqEIa~~lE~aL~ 436 (546)
..|.....-|.....|...-+.+-... -.|....+ .++-+..-=++.-+..++..+.
T Consensus 505 ~iP~~~~~~~~~~~~l~~~~~~L~~~~---------~~yn~i~~--~l~~~~~~Ll~~~~~~i~~~l~ 561 (579)
T PF08385_consen 505 EIPEEILELYEQAEKLYPYAESLQEIV---------RFYNSIIE--SLSPVERPLLEPEIQAIDRLLQ 561 (579)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH--HhhHHHHHHHHHHHHHHHHHHH
Confidence 677777766666666554433321111 12333333 3444666667777777777776
No 62
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=38.06 E-value=2e+02 Score=28.02 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=28.4
Q ss_pred CCCCCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHH
Q 009030 33 LFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDL 75 (546)
Q Consensus 33 ~F~~~dFdvd~FLs~~rr~~sLe~Lr~dLr~y~~~L~~eLveL 75 (546)
.|-.-.|||....+.+.+-.++-+=+.++-...+.+..++.+.
T Consensus 80 ~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 80 ELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444578888887776676666666666666666666666655
No 63
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=37.84 E-value=5e+02 Score=28.47 Aligned_cols=43 Identities=26% Similarity=0.289 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHH
Q 009030 102 APLLELREKIDGFRGALEGSLVALQNGLKQR-SEAASAREVLEL 144 (546)
Q Consensus 102 ~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R-~~l~~~k~~L~l 144 (546)
--|+++|++.-+....++...+.|-+.|=+| .+++..|..|+.
T Consensus 179 ~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~ 222 (552)
T KOG2129|consen 179 NTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQK 222 (552)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899988888888888888888888777 777777777764
No 64
>COG3006 MukF Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=37.29 E-value=3e+02 Score=28.73 Aligned_cols=118 Identities=14% Similarity=0.262 Sum_probs=62.5
Q ss_pred CcCCCCCCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCc--------ccHHHHH----
Q 009030 30 KSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKL--------VDVDAAV---- 97 (546)
Q Consensus 30 ~~~~F~~~dFdvd~FLs~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L--------~G~d~~i---- 97 (546)
.|+.|-.=.++|.+-..+ .+-=+.=..+-.+.+|.+.-+|.|+|+.+=++=+..| +.+.+.+
T Consensus 153 ~rnvfaplkysvaeifds------idl~qr~mde~qqsvke~ia~ll~kdwraai~sce~ll~etsg~lrelqdtl~aag 226 (440)
T COG3006 153 HRNVFAPLKYSVAEIFDS------IDLTQRLMDEQQQSVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAG 226 (440)
T ss_pred hhccchhhhhhHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 466665556666665443 2222333456678899999999999999988754433 3322222
Q ss_pred HhhhHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 98 VRMRAPLLELREKIDG--FRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKV 155 (546)
Q Consensus 98 ~~l~~pL~~lr~~V~~--~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~kl 155 (546)
.+++.-|..+++-|-+ --.-+++..-.++.+|. +-+.-+...+++-+.++..|.|+
T Consensus 227 dklqa~llriqd~~ig~~~l~fvd~li~dlq~kld--riiswgqqaidlwigydrhvhkf 284 (440)
T COG3006 227 DKLQANLLRIQDATIGHDDLHFVDRLVFDLQSKLD--RIISWGQQSIDLWIGYDRHVHKF 284 (440)
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH--HHHHhhhhhhHHHhcchHHHHHH
Confidence 1223333333322211 11224444444454444 33445555666666666655554
No 65
>PHA02562 46 endonuclease subunit; Provisional
Probab=36.45 E-value=5.1e+02 Score=28.88 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=15.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHH
Q 009030 52 VPFETLRSELQAHLSSLNHELI 73 (546)
Q Consensus 52 ~sLe~Lr~dLr~y~~~L~~eLv 73 (546)
..|++.+.+|+.=++.++..+-
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777666
No 66
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=36.07 E-value=1.5e+02 Score=23.72 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHH
Q 009030 54 FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAV 97 (546)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i 97 (546)
++...++...+...|++.+..+-++|+.++....-.|+|.-..+
T Consensus 3 l~~f~~~~~~~~~~l~~~~~~~~~~d~~~l~~~~H~lkG~a~~~ 46 (90)
T PF01627_consen 3 LDIFLEEAPEDLEQLEQALQALEQEDWEELRRLAHRLKGSAGNL 46 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhHHhc
Confidence 35567788888888888886656999999999999999866643
No 67
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=35.98 E-value=6.1e+02 Score=27.63 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=52.7
Q ss_pred CCCChHHHHhhccCCCC----------hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcc--cHHHHHHhhhHHH
Q 009030 37 PNFDSESYISELRTFVP----------FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLV--DVDAAVVRMRAPL 104 (546)
Q Consensus 37 ~dFdvd~FLs~~rr~~s----------Le~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~--G~d~~i~~l~~pL 104 (546)
.||....|+++.|-.+| .++++..|..+...|...|-..++......-+|...|. .-...+...+.-|
T Consensus 235 ~D~tl~D~vAd~ra~TPtaaae~~~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L 314 (438)
T PRK00286 235 TDFTIADFVADLRAPTPTAAAELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRL 314 (438)
T ss_pred CCccHHHHhhhccCCChHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHH
Confidence 47778888888764443 67888999999999999999999999999988888874 3344444444444
Q ss_pred HHHH
Q 009030 105 LELR 108 (546)
Q Consensus 105 ~~lr 108 (546)
..+.
T Consensus 315 ~~l~ 318 (438)
T PRK00286 315 DRLQ 318 (438)
T ss_pred HHHH
Confidence 4433
No 68
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.85 E-value=5.6e+02 Score=31.24 Aligned_cols=102 Identities=17% Similarity=0.279 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009030 57 LRSELQAHLSSLNH--ELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSE 134 (546)
Q Consensus 57 Lr~dLr~y~~~L~~--eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~ 134 (546)
||++++.|...+++ +..+.+-.+|++ +-+.|.-.++.+..+...+...+.++..+-.+..+.-++..+...+|+.
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~---~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~ 471 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIED---LESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKE 471 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777654 334445555544 5566777777888888888888888888877777777777777777754
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009030 135 -AASAREVLELLLDTFHVVSKVEKLIKE 161 (546)
Q Consensus 135 -l~~~k~~L~lll~~~~~v~klE~LL~~ 161 (546)
.++.+++-..+-.+-+-|++=++.|..
T Consensus 472 lWREE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 472 LWREEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444444444445566666554
No 69
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=35.16 E-value=1.8e+02 Score=25.80 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=33.9
Q ss_pred HHHhhcCcccHHHHHHhhhHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 83 FVNLSTKLVDVDAAVVRMRAPLLELREKID-GFRGALEGSLVALQNGLKQRSEAASAREVLELL 145 (546)
Q Consensus 83 FV~Lss~L~G~d~~i~~l~~pL~~lr~~V~-~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~ll 145 (546)
|-.=|.+++++|.+|++ .+.-+|..+. ++|++++-..+.|.+..++-..++..-.+|+-+
T Consensus 36 ~ha~~~~VvaIDNKIeQ---AMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 36 AHASSGSVVAIDNKIEQ---AMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred ccCCCCceEeechHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33668899998877653 2222222222 455555555555555444446677766777653
No 70
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.97 E-value=7.6e+02 Score=28.49 Aligned_cols=83 Identities=14% Similarity=0.320 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009030 56 TLRSELQAHLSSLNHELIDLINRDYA-DFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSE 134 (546)
Q Consensus 56 ~Lr~dLr~y~~~L~~eLveLIN~DY~-DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~ 134 (546)
.||.|+..++=.+ |..|- .|=.+...|..+++.++.|+.-...++.+....+..-....+.....=+++..
T Consensus 53 nLr~~iE~~~l~i--------N~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~ 124 (655)
T KOG3758|consen 53 NLRSDIESRLLKI--------NEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQ 124 (655)
T ss_pred hhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 4666666665554 44443 37778888888888888888888877777777776666666665443333445
Q ss_pred HHHHHHHHHHHH
Q 009030 135 AASAREVLELLL 146 (546)
Q Consensus 135 l~~~k~~L~lll 146 (546)
++..++.++..+
T Consensus 125 le~r~kii~~Fl 136 (655)
T KOG3758|consen 125 LELRKKIINAFL 136 (655)
T ss_pred HHHHHHHHHHHH
Confidence 555555555433
No 71
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=33.99 E-value=3.8e+02 Score=30.24 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=30.2
Q ss_pred HHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009030 83 FVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASARE 140 (546)
Q Consensus 83 FV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~ 140 (546)
...+...|......+...+.-|...+.++..++..++....+|.. .|..+...|.
T Consensus 276 ~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~---~K~el~~lke 330 (522)
T PF05701_consen 276 SSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEK---EKEELERLKE 330 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 444444455555566666666666666666666666666555542 3444444333
No 72
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.65 E-value=3e+02 Score=26.36 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHhhc-CcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009030 54 FE-TLRSELQAHLSSLNHELIDL--INRDYADFVNLST-KLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGL 129 (546)
Q Consensus 54 Le-~Lr~dLr~y~~~L~~eLveL--IN~DY~DFV~Lss-~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L 129 (546)
|+ +|...|+.+.+.+....-++ +..++.|+|++.. +...+...+...+.-+....+++.++-..-.....++.+.+
T Consensus 100 L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~~~~~~ 179 (204)
T PF04740_consen 100 LESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSEIEELL 179 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HH
Q 009030 130 KQ 131 (546)
Q Consensus 130 ~~ 131 (546)
..
T Consensus 180 ~~ 181 (204)
T PF04740_consen 180 QA 181 (204)
T ss_pred HH
No 73
>PLN03242 diacylglycerol o-acyltransferase; Provisional
Probab=33.45 E-value=19 Score=39.17 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.0
Q ss_pred hhchhHHHHHHhhccchhHHHH
Q 009030 402 RAEAIYVEFMKQWNVGVYFSLR 423 (546)
Q Consensus 402 R~~~~y~~f~~rWnLpVYFqLR 423 (546)
=++.++.+|.++||.|||-=+.
T Consensus 298 WNs~s~~eywR~WN~PVH~fl~ 319 (410)
T PLN03242 298 WNASEVSEYWRLWNMPVHYWLV 319 (410)
T ss_pred hccCcHHHHHHHcchHHHHHHH
Confidence 3677889999999999986554
No 74
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=32.70 E-value=4.2e+02 Score=24.82 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=54.0
Q ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009030 92 DVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIK 160 (546)
Q Consensus 92 G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL~ 160 (546)
++-+.++.+..-|..++.+-..|.....+..+.-+..|+++.++...-.-+.-.|.+++.++.+.+.|.
T Consensus 18 ~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln 86 (157)
T PF04136_consen 18 QLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLN 86 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHc
Confidence 344455556666777777777888888888888888889999988888888888889998888887774
No 75
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=32.05 E-value=3.9e+02 Score=24.27 Aligned_cols=33 Identities=9% Similarity=0.245 Sum_probs=17.7
Q ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHH
Q 009030 91 VDVDAAVVRMRAPLLELREKIDGFRGALEGSLV 123 (546)
Q Consensus 91 ~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~ 123 (546)
..++.+|..-+.-|..++.+|...+..+.+...
T Consensus 74 ~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~ 106 (146)
T PRK07720 74 TNLERTIDHYQLLVMQAREQMNRKQQDLTEKNI 106 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556555555555555555555555444443
No 76
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.05 E-value=5.6e+02 Score=26.06 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=31.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 96 AVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVE 156 (546)
Q Consensus 96 ~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE 156 (546)
.+.+|+.-|..++.+|...|+.+++...+|+...++.+ +++.+++.++.++|
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~---------~~y~dld~r~~~~~ 106 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK---------QIYLQIDSLSSGGA 106 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhccc
Confidence 34456666777777777777777777777665433222 44455565544433
No 77
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.86 E-value=6.5e+02 Score=31.82 Aligned_cols=70 Identities=7% Similarity=-0.000 Sum_probs=34.2
Q ss_pred HHHhhhHHHHHHhhcCcc-----cHHHHHHhhhH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 009030 74 DLINRDYADFVNLSTKLV-----DVDAAVVRMRA-------PLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREV 141 (546)
Q Consensus 74 eLIN~DY~DFV~Lss~L~-----G~d~~i~~l~~-------pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~ 141 (546)
+-+++++.++..+...+. |+...|..+.. .+..+..++......+.....++.+.=.+++.+...-..
T Consensus 944 ~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~ 1023 (1311)
T TIGR00606 944 NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL 1023 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555553 33333444444 445555555555555555555555444444444444444
Q ss_pred HH
Q 009030 142 LE 143 (546)
Q Consensus 142 L~ 143 (546)
++
T Consensus 1024 ~~ 1025 (1311)
T TIGR00606 1024 RK 1025 (1311)
T ss_pred HH
Confidence 43
No 78
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=31.62 E-value=2.2e+02 Score=31.68 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009030 54 FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRS 133 (546)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~ 133 (546)
.|+|+.+.+.....-..|.+.|. +|++||-. +-.+.+..+.+.+.-|...+.+...+-.++....+.+...+++|+
T Consensus 12 f~~l~r~~~~l~~g~e~ef~rl~-k~fed~~e---k~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr 87 (604)
T KOG3564|consen 12 FEQLVRDIEILGEGNEDEFIRLR-KDFEDFEE---KWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRR 87 (604)
T ss_pred HHHHHHHHHHhcCccHHHHHHHH-HHHHHHHH---HHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence 45666666555555444544443 56777654 345666777777777888888888888888888888888888888
Q ss_pred HHHHHHHHHHH
Q 009030 134 EAASAREVLEL 144 (546)
Q Consensus 134 ~l~~~k~~L~l 144 (546)
+++..+..+|-
T Consensus 88 ~ae~d~~~~E~ 98 (604)
T KOG3564|consen 88 RAEADCEKLET 98 (604)
T ss_pred HHhhhHHHHHH
Confidence 88877776653
No 79
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.60 E-value=3.9e+02 Score=24.41 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=24.9
Q ss_pred HHHHHHHhhh--HHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009030 70 HELIDLINRD--YADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQ 126 (546)
Q Consensus 70 ~eLveLIN~D--Y~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~ 126 (546)
++|-+|+|+. +.+||.--..+..+...+..+......+-+...+....++.....+.
T Consensus 7 ~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~ 65 (150)
T PF07200_consen 7 EELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQ 65 (150)
T ss_dssp HHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4566666654 44566555555555555555554444444433333344443333333
No 80
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=30.90 E-value=1.4e+02 Score=22.32 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009030 102 APLLELREKIDGFRGALEGSLVALQNGLKQRSEAASARE 140 (546)
Q Consensus 102 ~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~ 140 (546)
.....|+.+|...|..+...+++|...+.=+.-+...+.
T Consensus 3 ~~~~~ie~dIe~tR~~La~tvd~L~~r~~P~~~a~~~~~ 41 (49)
T PF12277_consen 3 RSPDEIERDIERTRAELAETVDELAARLSPKRLADEAKE 41 (49)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 346788999999999999999999888776655544443
No 81
>PLN02401 diacylglycerol o-acyltransferase
Probab=30.89 E-value=22 Score=39.04 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHHHhhccchhHHHH
Q 009030 374 FLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLR 423 (546)
Q Consensus 374 F~~nY~~t~~Fl~~lE~~c~S~~~v~~lR~~~~y~~f~~rWnLpVYFqLR 423 (546)
|+-=+-+.++.++++=.. +++.==+.==++.++.+|.++||.||+-=+.
T Consensus 296 Fy~ifh~~LN~~AEltrF-gDR~FY~DWWNs~s~~eywR~WN~PVH~fL~ 344 (446)
T PLN02401 296 FYCFFHLWLNILAELLRF-GDREFYKDWWNAKTVEEYWRMWNMPVHKWMV 344 (446)
T ss_pred HHHHHHHHHHHHHHHHhh-hhhhhhhhhhccCcHHHHHHHcchHHHHHHH
Confidence 444444444444443332 2222222233678889999999999986554
No 82
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=29.96 E-value=1e+03 Score=28.50 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHH
Q 009030 58 RSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSL 122 (546)
Q Consensus 58 r~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~ 122 (546)
..|+-.|++.+..++.|-.|+=-+-=--||..|....+.+..++.-|..++..+...-+..++..
T Consensus 254 i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqat 318 (1265)
T KOG0976|consen 254 IEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQAT 318 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 35677888888888888887766666678888888888888888888777766655554444443
No 83
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.88 E-value=5.1e+02 Score=24.86 Aligned_cols=6 Identities=67% Similarity=1.088 Sum_probs=3.1
Q ss_pred hhHHHH
Q 009030 78 RDYADF 83 (546)
Q Consensus 78 ~DY~DF 83 (546)
.||+||
T Consensus 39 ~d~~ef 44 (185)
T cd07628 39 VDYADL 44 (185)
T ss_pred HHHHHH
Confidence 456553
No 84
>PF05363 Herpes_US12: Herpesvirus US12 family; InterPro: IPR008026 ICP47 (US12) is a key factor in the evasion of cellular immune response against Human herpesvirus 1 (HHV-1) (Human herpes simplex virus 1)-infected cells. Specific inhibition of the transporter associated with antigen processing (TAP) by ICP47 prevents peptide transport into the endoplasmic reticulum and subsequent loading of major histocompatibility complex (MHC) class I molecules []. ICP47 is comprised of three helices and is associated with cellular membranes [].; GO: 0019049 evasion of host defenses by virus; PDB: 1QLO_A.
Probab=29.60 E-value=47 Score=27.60 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=18.1
Q ss_pred hHHHHhhcc-CCCChHHHHHHHHHHHHH
Q 009030 41 SESYISELR-TFVPFETLRSELQAHLSS 67 (546)
Q Consensus 41 vd~FLs~~r-r~~sLe~Lr~dLr~y~~~ 67 (546)
+|.||.+-| +|.+--|||.||+.|-..
T Consensus 8 ~D~fL~~~~~~~rt~aDlr~El~a~a~E 35 (86)
T PF05363_consen 8 ADAFLDSPRTRHRTYADLRRELDAYADE 35 (86)
T ss_dssp HHHHHHT-SSS---HHHHHHHHHHT---
T ss_pred HHHHHhCCCCCchhHHHHHHHHHHHhHH
Confidence 789998666 999999999999987643
No 85
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.08 E-value=9.1e+02 Score=27.58 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=12.9
Q ss_pred cchHhHHHHHHHHHHHHHHHHhHH
Q 009030 226 PFIENMEKRIKSASLLLDASLGHC 249 (546)
Q Consensus 226 pfv~~~~~RI~~i~~~L~~~L~~~ 249 (546)
-|...++..|...+.-++..++.+
T Consensus 553 ~~k~~iqs~le~~k~~~~~~~~ei 576 (581)
T KOG0995|consen 553 DFKVSIQSSLENLKADLHKECEEI 576 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555544443
No 86
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.67 E-value=5.7e+02 Score=25.69 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 009030 56 TLRSELQAH 64 (546)
Q Consensus 56 ~Lr~dLr~y 64 (546)
+||.-...|
T Consensus 5 ~ir~K~~~l 13 (230)
T PF10146_consen 5 EIRNKTLEL 13 (230)
T ss_pred HHHHHHHHH
Confidence 344444443
No 87
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=28.01 E-value=1e+02 Score=29.57 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=47.7
Q ss_pred hHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHhhcCcccHHH
Q 009030 41 SESYISELR-TFVPFETLRSELQAHLSSLNHELIDLINRDYAD------FVNLSTKLVDVDA 95 (546)
Q Consensus 41 vd~FLs~~r-r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~D------FV~Lss~L~G~d~ 95 (546)
++..+...+ +-.++.+|-++.+.|+..=+.++-+.|=.=|+| ||+||.+.=|+..
T Consensus 19 vA~~ile~~~~~~~F~dii~EI~~~~~~s~~ei~~~i~~FYTdln~DgrFi~LGdn~WgLRs 80 (175)
T COG3343 19 VAHAILEEKKKPFNFSDIINEIQKLLGVSKEEIRSRIGQFYTDLNIDGRFISLGDNKWGLRS 80 (175)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhccCCceeeccccccchhh
Confidence 556666556 569999999999999999999999999999998 8999999998665
No 88
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=27.79 E-value=7.1e+02 Score=25.90 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=4.5
Q ss_pred hHHHHHHhh
Q 009030 79 DYADFVNLS 87 (546)
Q Consensus 79 DY~DFV~Ls 87 (546)
+..+++.+-
T Consensus 106 ~l~~ll~~p 114 (291)
T TIGR00255 106 NLGDFLRLP 114 (291)
T ss_pred CHHHHhCCC
Confidence 455555443
No 89
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=27.73 E-value=5.5e+02 Score=24.61 Aligned_cols=71 Identities=15% Similarity=0.341 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--hHHH-HHHhhcCcccH--HHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009030 57 LRSELQAHLSSLNHELIDLINR--DYAD-FVNLSTKLVDV--DAAVVRMRAPLLELREKIDGFRGALEGSLVALQN 127 (546)
Q Consensus 57 Lr~dLr~y~~~L~~eLveLIN~--DY~D-FV~Lss~L~G~--d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~ 127 (546)
-|..=+.|+..++-.++++..+ +|.. |=+--..|+.. .+....+...+..++.+|......++....+|..
T Consensus 60 ak~ha~~w~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~ 135 (184)
T PF05791_consen 60 AKEHAKEWLDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELND 135 (184)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555553221 1222 22222223322 3455666667777777777777777776666653
No 90
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=27.58 E-value=1.1e+03 Score=28.32 Aligned_cols=112 Identities=22% Similarity=0.320 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHhhc--CcccHH----------HHHHhhhHHHHHHHHHHHHHHH
Q 009030 54 FETLRSELQAHLSSLNHELIDLINRDYA-----DFVNLST--KLVDVD----------AAVVRMRAPLLELREKIDGFRG 116 (546)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~DY~-----DFV~Lss--~L~G~d----------~~i~~l~~pL~~lr~~V~~~r~ 116 (546)
+...-.||++|++....++--++=.||+ +|-.|.+ .++|++ ..+..+..-..++++-+++++.
T Consensus 191 m~~~~~dl~t~lrdv~~~l~~lli~dy~~~e~qv~~qLn~i~~~i~~~l~~~s~s~vi~~l~~v~~~~~el~~~~~ave~ 270 (865)
T KOG4331|consen 191 MRRLATDLRTYLRDVPRDLMVLLIADYTHSECQVFYQLNEIGMLIGGCLHDDSESNVIPVLDYVLSAAQELREMSEAVEN 270 (865)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhccchhHHHHHhhcccchhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445579999999999999989989995 4655543 112211 1344444444555555555544
Q ss_pred HHHhHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHH----HHHHHHHHHhhhCCCCC
Q 009030 117 ALEGSLVALQNGLKQR-SEAA-SAREVLELLLDTF----HVVSKVEKLIKELPSLP 166 (546)
Q Consensus 117 ~v~~~~~~l~~~L~~R-~~l~-~~k~~L~lll~~~----~~v~klE~LL~~l~~~p 166 (546)
+++.++++..++++- ++|+ ..++.|..+++.. .-+.+.++.+..+.+.|
T Consensus 271 -m~~~L~~~~s~~~~~~~~lr~~~~~sL~~llq~~~c~~~~ca~~~~~l~sl~~~~ 325 (865)
T KOG4331|consen 271 -MNDTLDSLGSQLNDGASKLRERVNASLKVLLQVVLCQKKDCASAVKTLPSLRSTP 325 (865)
T ss_pred -HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHhHHhHHHhhHHHHHhhhhhccCh
Confidence 444444554444431 3333 3333333333222 33445666666555544
No 91
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=27.11 E-value=4.1e+02 Score=29.24 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=5.1
Q ss_pred CCChHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHhhcCcc--cHHHHHHhhhHHHH
Q 009030 51 FVPFETLRSELQAHL-------SSLNHELIDLINRDYADFVNLSTKLV--DVDAAVVRMRAPLL 105 (546)
Q Consensus 51 ~~sLe~Lr~dLr~y~-------~~L~~eLveLIN~DY~DFV~Lss~L~--G~d~~i~~l~~pL~ 105 (546)
+..+.+||.||...- +..++.|-.+- .--..|-+.|.+.. +....|+.-+.-|.
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~-~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~ 212 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIR-EKIKKVKSASTNASGDSNRAYMESGKKKLS 212 (424)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccchhHHHHHHHHHHH
Confidence 556677777776533 33333333333 33455666666665 33334444444333
No 92
>PF06466 PCAF_N: PCAF (P300/CBP-associated factor) N-terminal domain; InterPro: IPR009464 This region is spliced out of Q92830 from SWISSPROT isoform 2. It is predicted to be of a mixed alpha/beta fold - though predominantly helical.; GO: 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.92 E-value=4.8e+02 Score=26.66 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHhhhc--c-CCCccccccccccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHH
Q 009030 310 ELESDYEQIKQCVEKDCKFLLDISSAE--N-SGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLA 386 (546)
Q Consensus 310 ~L~~~y~~il~fv~~~~~~ll~it~~~--~-~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~ 386 (546)
...++|--+...+.+ -|+..+... + -|.++|.= |-|..++......-|+++.|...+..|..+--||.
T Consensus 108 dtkqvy~yl~klLrK---cIl~~~~pvie~plG~PPFE~------PsI~k~V~nfv~~kf~~l~~~E~q~m~elakmFL~ 178 (252)
T PF06466_consen 108 DTKQVYFYLFKLLRK---CILQMTKPVIEGPLGKPPFEK------PSIEKAVTNFVLYKFSHLPQKEWQTMYELAKMFLH 178 (252)
T ss_pred hHHHHHHHHHHHHHH---HHHhhCCCcccCCCCCCCCCC------ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 456777666655533 233332211 1 13444442 33445555555556899999999999999999998
Q ss_pred HHHh-hCCCHHHHH-H--HhhchhHHHHHHhh
Q 009030 387 YLEG-YCPSRSAVA-K--FRAEAIYVEFMKQW 414 (546)
Q Consensus 387 ~lE~-~c~S~~~v~-~--lR~~~~y~~f~~rW 414 (546)
.|-. .-.+.++.+ + --..+.|+....||
T Consensus 179 ~lN~W~le~ps~~~~~~~~~d~~~YkinYtRW 210 (252)
T PF06466_consen 179 CLNHWKLEAPSQRRQRSNAEDQSAYKINYTRW 210 (252)
T ss_pred HHhhccCCChHHHHhhcCcchHHHHHHHHHHH
Confidence 8776 233333322 1 13567888888888
No 93
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.66 E-value=5.5e+02 Score=25.34 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=18.7
Q ss_pred CCChHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 009030 38 NFDSESYISELR-TFVPFETLRSELQAHLSSLNHELIDLINR 78 (546)
Q Consensus 38 dFdvd~FLs~~r-r~~sLe~Lr~dLr~y~~~L~~eLveLIN~ 78 (546)
.+=+..||+.-. -..-|+.|.++| +.|+++|-++-|+
T Consensus 78 GWV~~~~Ls~~p~~~~rlp~le~el----~~l~~~l~~~~~~ 115 (206)
T PRK10884 78 AWIPLKQLSTTPSLRTRVPDLENQV----KTLTDKLNNIDNT 115 (206)
T ss_pred EeEEHHHhcCCccHHHHHHHHHHHH----HHHHHHHHHHHhH
Confidence 344556665432 233444444444 4466666665544
No 94
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.44 E-value=4.1e+02 Score=22.66 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=20.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009030 95 AAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRS 133 (546)
Q Consensus 95 ~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~ 133 (546)
..+..+..-+..+...+..++..|....+.+...|++|+
T Consensus 21 ~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e 59 (127)
T smart00502 21 DALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRK 59 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555543
No 95
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=26.23 E-value=69 Score=20.15 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.4
Q ss_pred HHHHHHHHhcChhhHHHHHHHHh
Q 009030 264 NCLRAYAAIDNTRNAEEIFCNTV 286 (546)
Q Consensus 264 ~cLr~Y~~ld~~~~ae~~~r~~v 286 (546)
..++.|...|..++|++++++..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHh
Confidence 35788999999999999998754
No 96
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.04 E-value=3.8e+02 Score=22.23 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009030 99 RMRAPLLELREKIDGFRGALEGSLVALQNGL 129 (546)
Q Consensus 99 ~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L 129 (546)
+++.-+.++.+.+..+..+++....++.+.+
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll 53 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPITKEINDLL 53 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333344444444444444444444433333
No 97
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=25.46 E-value=4.7e+02 Score=27.32 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=54.5
Q ss_pred CCCChHHHHHHHHHHHHHH---HHHHHHHHhhhHHH-HHHhhcCcccHHHHHHhhhHHHH---HHH-----HHHHHHHHH
Q 009030 50 TFVPFETLRSELQAHLSSL---NHELIDLINRDYAD-FVNLSTKLVDVDAAVVRMRAPLL---ELR-----EKIDGFRGA 117 (546)
Q Consensus 50 r~~sLe~Lr~dLr~y~~~L---~~eLveLIN~DY~D-FV~Lss~L~G~d~~i~~l~~pL~---~lr-----~~V~~~r~~ 117 (546)
|.-+=|.+|.--|.+-..+ ..+|++-||.-|+- +-.+.+.|--++..|.+|+..-. .++ .+|...+..
T Consensus 33 r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~F 112 (324)
T PF12126_consen 33 RADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGF 112 (324)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHH
Confidence 3344455666666555544 56899999999986 99999999999999999997543 222 466666666
Q ss_pred HHhHHHHHH
Q 009030 118 LEGSLVALQ 126 (546)
Q Consensus 118 v~~~~~~l~ 126 (546)
+.+.+..|+
T Consensus 113 lreAL~rLr 121 (324)
T PF12126_consen 113 LREALERLR 121 (324)
T ss_pred HHHHHHHhh
Confidence 666666554
No 98
>PRK06443 chorismate mutase; Validated
Probab=25.41 E-value=81 Score=30.39 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=23.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 009030 50 TFVPFETLRSELQAHLSSLNHELIDLINRDYA 81 (546)
Q Consensus 50 r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~ 81 (546)
++.+|++||+++.. +..+|++|+|+--+
T Consensus 3 ~~~dLeeLR~eID~----ID~eIL~LL~kRm~ 30 (177)
T PRK06443 3 HFIDMEDLRSEILE----NTMDIIELIEKRRE 30 (177)
T ss_pred ccccHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 45678888888776 99999999998754
No 99
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.31 E-value=9.1e+02 Score=26.34 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=57.5
Q ss_pred CCCChHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHH----HHHHHHHHHHHHhHH
Q 009030 50 TFVPFETLRSELQ---AHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLEL----REKIDGFRGALEGSL 122 (546)
Q Consensus 50 r~~sLe~Lr~dLr---~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~l----r~~V~~~r~~v~~~~ 122 (546)
....+..+..+|+ .-...|..++-.|=++=..|+=-+...|....-+.++|-.-|..+ +.||...|.++..+.
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~E 289 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASME 289 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4455666655554 445556666666555444466666777776555555554444333 356666666665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 123 VALQNGLKQRSEAASAREVLELLLDTFHVVSKVE 156 (546)
Q Consensus 123 ~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE 156 (546)
+.|.=+-.+| .|.+-+.|=.+..+|+|||
T Consensus 290 EK~~Yqs~eR-----aRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 290 EKMAYQSYER-----ARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHH-----HhHHHHHHHHHHHHHHHHH
Confidence 4433332323 4455555555778888999
No 100
>PRK09546 zntB zinc transporter; Reviewed
Probab=25.26 E-value=5.9e+02 Score=26.43 Aligned_cols=75 Identities=17% Similarity=0.307 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHHH-HhhcCcccHHHHHHh----hhHHHHHHHHHHHHHHHHHHhH
Q 009030 52 VPFETLRSELQAH-----LSSLNHELIDLINRDYADFV-NLSTKLVDVDAAVVR----MRAPLLELREKIDGFRGALEGS 121 (546)
Q Consensus 52 ~sLe~Lr~dLr~y-----~~~L~~eLveLIN~DY~DFV-~Lss~L~G~d~~i~~----l~~pL~~lr~~V~~~r~~v~~~ 121 (546)
..++.++..++.- ...+=-.+++.|.+.|.+++ .+...+..+++.+.. .+..|..+|+++...+..+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~ 201 (324)
T PRK09546 122 LALDDVVSDLQEGTGPTDCGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRYMAPQ 201 (324)
T ss_pred ccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777766531 12345688899999999988 777777777776632 1235666666666666666655
Q ss_pred HHHHH
Q 009030 122 LVALQ 126 (546)
Q Consensus 122 ~~~l~ 126 (546)
.+.+.
T Consensus 202 ~~~l~ 206 (324)
T PRK09546 202 RDVFA 206 (324)
T ss_pred HHHHH
Confidence 55544
No 101
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=25.10 E-value=1.1e+03 Score=28.14 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=46.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh----------hcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 009030 51 FVPFETLRSELQAHLSSLNHELIDLINRDYADFVNL----------STKLVDVDAAVVRMRAPLLELREKIDGFRGALEG 120 (546)
Q Consensus 51 ~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~L----------ss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~ 120 (546)
-.-.|.++.+|...+..++..|.++--++++=--.| +..-...+..+..++.-|....++....+-++.-
T Consensus 80 s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~ 159 (769)
T PF05911_consen 80 SKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHV 159 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999988532221 1111122233444444555555555555555554
Q ss_pred HHHHHH
Q 009030 121 SLVALQ 126 (546)
Q Consensus 121 ~~~~l~ 126 (546)
...+++
T Consensus 160 ~~kele 165 (769)
T PF05911_consen 160 LSKELE 165 (769)
T ss_pred HHHHHH
Confidence 444443
No 102
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=24.82 E-value=5.6e+02 Score=27.41 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHH-HhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 009030 64 HLSSLNHELIDL-INRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALE 119 (546)
Q Consensus 64 y~~~L~~eLveL-IN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~ 119 (546)
....|+..|.+- |=.|+..|..||.....+...++.++. .....+++...+..+.
T Consensus 15 r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~-~~~~~~~l~~a~~~l~ 70 (363)
T COG0216 15 RYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYRE-YKKAQEDLEDAKEMLA 70 (363)
T ss_pred HHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 344455555443 446788888888886666655554443 3333444444444443
No 103
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=24.63 E-value=7.6e+02 Score=26.49 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHH-HHHHHHHHHHHhHHHHH
Q 009030 59 SELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELR-EKIDGFRGALEGSLVAL 125 (546)
Q Consensus 59 ~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr-~~V~~~r~~v~~~~~~l 125 (546)
.+|..++..|.+.| .. +.+-..+++-+..-..+-.+|+.|..-|.-|. ..+..+...+.....++
T Consensus 212 a~LE~RL~~LE~~l-G~-~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~ 277 (388)
T PF04912_consen 212 ADLEKRLARLESAL-GI-DSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSEL 277 (388)
T ss_pred HHHHHHHHHHHHHh-CC-CccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 35555555554432 22 33433444444444455556666665554442 23444444444444443
No 104
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=24.43 E-value=1e+03 Score=26.64 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHH
Q 009030 68 LNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSL 122 (546)
Q Consensus 68 L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~ 122 (546)
|+.+.-++|...-.+=+.|-........-|++++.-|..+-.++..+-+......
T Consensus 467 ln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~k 521 (622)
T COG5185 467 LNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSK 521 (622)
T ss_pred HhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555454555555555666666666666666666655555554433
No 105
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.89 E-value=7.4e+02 Score=24.77 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=19.7
Q ss_pred HHhhccCCCChH----HHHHHHHHHHHHHHH
Q 009030 44 YISELRTFVPFE----TLRSELQAHLSSLNH 70 (546)
Q Consensus 44 FLs~~rr~~sLe----~Lr~dLr~y~~~L~~ 70 (546)
|-...+|+..|| .|++|++.|+..++.
T Consensus 13 fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~ 43 (225)
T cd07590 13 LEREVQKLQQLESTTKKLYKDMKKYIEAVLA 43 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666665 589999999998884
No 106
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.72 E-value=3.5e+02 Score=31.17 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 009030 139 REVLELLLDTFHVVSKVEKLI 159 (546)
Q Consensus 139 k~~L~lll~~~~~v~klE~LL 159 (546)
++..++|.+-.+-|.||+.++
T Consensus 383 ~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 383 KKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHhcCcHHHHHHHHHHH
Confidence 334455555555555666555
No 107
>PF12699 phiKZ_IP: phiKZ-like phage internal head proteins; InterPro: IPR024413 Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family []. Members of the family reside in the head [] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head.
Probab=23.71 E-value=1.7e+02 Score=31.10 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=52.1
Q ss_pred cCcCCCCCCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHH
Q 009030 29 FKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLEL 107 (546)
Q Consensus 29 F~~~~F~~~dFdvd~FLs~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~l 107 (546)
|++..+.-++||+......-+-.+++|+|..-++.-.+...+-+--+++.=.+-|+++.+++..++++++.+..-+..+
T Consensus 27 ~~~~~~~lEs~d~~~~~~~~~~~~s~Edlk~~~k~~~~k~~e~i~kl~~~l~~~~~~~~~~~~~~~~r~~~L~~~~~~l 105 (339)
T PF12699_consen 27 FEKTSTSLESYDATPRSAEESVAVSLEDLKERAKEAGKKIKEFIKKLIADLKDYAVKFMSGIERVEERIDKLQERAKKL 105 (339)
T ss_pred ccccccchhccCCCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 4444444556665544443233348887777777766666666666666656668888888888888888888777766
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.51 E-value=2.9e+02 Score=28.98 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=12.1
Q ss_pred hhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHH
Q 009030 78 RDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSL 122 (546)
Q Consensus 78 ~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~ 122 (546)
+.|..|++-...=.+.+..+..+..-+..+..+......++.+..
T Consensus 26 ~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE 70 (314)
T PF04111_consen 26 DTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELE 70 (314)
T ss_dssp ----------------HH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777754442223344444444444444444444444444333
No 109
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.37 E-value=3.5e+02 Score=23.62 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 009030 101 RAPLLELREKIDGFRGALE 119 (546)
Q Consensus 101 ~~pL~~lr~~V~~~r~~v~ 119 (546)
+..+.+++-++.++++++.
T Consensus 64 ~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3344444444444443333
No 110
>PRK15396 murein lipoprotein; Provisional
Probab=23.08 E-value=1.9e+02 Score=24.21 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=17.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009030 96 AVVRMRAPLLELREKIDGFRGALEGSLVALQ 126 (546)
Q Consensus 96 ~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~ 126 (546)
.++.++..+..+..+|......+.....+++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~ 56 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQ 56 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666555555555444
No 111
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=23.05 E-value=6.5e+02 Score=23.79 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhHHHHHH----hhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009030 68 LNHELIDLINRDYADFVN----LSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQ 126 (546)
Q Consensus 68 L~~eLveLIN~DY~DFV~----Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~ 126 (546)
..++-++-||+-|.||=| +...+.|+.+.+..++.-|+.+...|+.+...++.+.+++.
T Consensus 41 ~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~N 103 (157)
T COG3352 41 IDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFN 103 (157)
T ss_pred CChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346778889998888754 44477788888888888888888888888777777666554
No 112
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.71 E-value=5.7e+02 Score=25.25 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhh
Q 009030 51 FVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMR 101 (546)
Q Consensus 51 ~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~ 101 (546)
...|-.=+.+|+.-...+-..+..|=|.+ --+|+..|.++.+.+..|+
T Consensus 27 ~~~lv~k~~~L~~~~~~fak~~~~la~~E---~~~L~~~L~~lae~~~~i~ 74 (211)
T cd07598 27 FAAYTRKTARLRDKGDELAKSINAYADTE---NPSLKQGLKNFAECLAALQ 74 (211)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHH
Confidence 34444446667777777777777666666 4667777777776655554
No 113
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=22.18 E-value=99 Score=26.62 Aligned_cols=21 Identities=48% Similarity=0.545 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 009030 58 RSELQAHLSSLNHELIDLINR 78 (546)
Q Consensus 58 r~dLr~y~~~L~~eLveLIN~ 78 (546)
+.|||..+..=+.||.||||+
T Consensus 10 qeelr~llseK~~ELydL~~e 30 (100)
T PF10655_consen 10 QEELRDLLSEKNGELYDLANE 30 (100)
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 678999999999999999997
No 114
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.00 E-value=7.8e+02 Score=24.80 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=9.3
Q ss_pred CCCChHHHHHHHHH
Q 009030 50 TFVPFETLRSELQA 63 (546)
Q Consensus 50 r~~sLe~Lr~dLr~ 63 (546)
-|+.+|-+|.+|+.
T Consensus 101 EhiD~elvrkEl~n 114 (290)
T COG4026 101 EHIDVELVRKELKN 114 (290)
T ss_pred cccCHHHHHHHHHH
Confidence 36677777777654
No 115
>PRK07248 hypothetical protein; Provisional
Probab=21.84 E-value=1.1e+02 Score=25.44 Aligned_cols=24 Identities=21% Similarity=0.603 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 009030 53 PFETLRSELQAHLSSLNHELIDLINRDY 80 (546)
Q Consensus 53 sLe~Lr~dLr~y~~~L~~eLveLIN~DY 80 (546)
+|+++|+++.. +..+|++|+++-.
T Consensus 2 ~L~~lR~~ID~----iD~~i~~Ll~~R~ 25 (87)
T PRK07248 2 DLEEIRQEIDQ----IDDQLVALLEKRM 25 (87)
T ss_pred CHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 56677766655 9999999998864
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=21.56 E-value=1.2e+02 Score=19.27 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=19.4
Q ss_pred HHHHHHHHhcChhhHHHHHHHHh
Q 009030 264 NCLRAYAAIDNTRNAEEIFCNTV 286 (546)
Q Consensus 264 ~cLr~Y~~ld~~~~ae~~~r~~v 286 (546)
.+++.|..-|...+|.++|++..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 35777999999999999999853
No 117
>PF06350 HSL_N: Hormone-sensitive lipase (HSL) N-terminus; InterPro: IPR010468 This domain is found in several mammalian hormone-sensitive lipase (HSL) proteins. Hormone-sensitive lipase, a key enzyme in fatty acid mobilisation, overall energy homeostasis, and possibly steroidogenesis, is acutely controlled via reversible phosphorylation by catecholamines and insulin [].; GO: 0016298 lipase activity, 0008203 cholesterol metabolic process, 0016042 lipid catabolic process
Probab=21.54 E-value=9.7e+02 Score=25.28 Aligned_cols=204 Identities=16% Similarity=0.212 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCCCCCCcccchhhhhccCCCCCCCcccCCcccccchhHHHHHHHH
Q 009030 132 RSEAASAREVLELLLDTFHVVSKVEKLIKELPS-LPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLERIAS 210 (546)
Q Consensus 132 R~~l~~~k~~L~lll~~~~~v~klE~LL~~l~~-~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~LeRiA~ 210 (546)
+...+.++++...+..+.+.+..||-++..+.. .| .-|++. .++ ++| .+ +..+++++...
T Consensus 23 ~~~~e~~~Rl~~a~~~i~d~~~~lep~~~~i~~va~-----------~yDfD~--~tP---gNG--YR-Slv~Vv~~cl~ 83 (313)
T PF06350_consen 23 QDPGEYGQRLVAAFMAIQDHIHALEPLVKEIAAVAH-----------HYDFDE--ETP---GNG--YR-SLVKVVDSCLL 83 (313)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hcCCCC--CCC---CCc--hh-hHHHHHHHHHH
Confidence 344556677777777778888888887654332 11 111110 011 111 22 22344555555
Q ss_pred HHHHHHHHHHhcCCCcchHh--HHHHHHHHHHHHHHHHhHHHHhhhh-----------hcCHHHHHHHHHHHHHhcChhh
Q 009030 211 EMNRLKFYIAHAQNLPFIEN--MEKRIKSASLLLDASLGHCFVHGLE-----------HQNANVIYNCLRAYAAIDNTRN 277 (546)
Q Consensus 211 e~~~L~~~~~~~~~~pfv~~--~~~RI~~i~~~L~~~L~~~~~~~l~-----------~~~~~~l~~cLr~Y~~ld~~~~ 277 (546)
-..++..++...++.-|.++ --+.+++. ..++..|.+++..+.+ ..+.....+.|+-|.+|++..
T Consensus 84 ~l~~~~r~i~~~r~s~fFR~~~~~~ElEAy-~~~L~~L~~~l~~~~~L~~~~~~G~LF~~d~~~~~~ll~~~e~i~~~c- 161 (313)
T PF06350_consen 84 HLIHLCRYIASNRDSIFFRASHYCKELEAY-ASVLCQLRALLQYAQRLLSWSSSGDLFPGDAHLSQELLREYETIDQYC- 161 (313)
T ss_pred HHHHHHHHHHhcccceEeehhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCCcCCCcchhHHHHHHHHHhhccee-
Confidence 55554444444444444443 12344444 4455557777655421 123345566677777776633
Q ss_pred HHHHHHHH-------hhHHHHhhhc------CCCCCccccCCCcchHHHHHHHHHHH----H--HhhhHHHHHHhhhccC
Q 009030 278 AEEIFCNT-------VVAPLMQKII------PHGPSEALAGASGDELESDYEQIKQC----V--EKDCKFLLDISSAENS 338 (546)
Q Consensus 278 ae~~~r~~-------vV~P~l~~ii------~~~~l~~~~~~s~~~L~~~y~~il~f----v--~~~~~~ll~it~~~~~ 338 (546)
-+.+- -++|.++-|- ++.. .++..++...-+++... + +...+.+.++|...+
T Consensus 162 ---FYGRclGFQf~~si~~~l~~i~~~masys~~y-----~~~~~~~~~~~~Sl~~s~ky~~~PE~Ra~~i~~itq~~d- 232 (313)
T PF06350_consen 162 ---FYGRCLGFQFCPSIRPILQTIGIAMASYSESY-----YSNKSGLGRAASSLFTSGKYALDPELRARRIVRITQNAD- 232 (313)
T ss_pred ---eccccccceecHHHHHHHHHHeeEEEehhhhh-----hcCCchHHHHHHHHHhcCceecCHHHHHHHHHHHHhhcC-
Confidence 11111 1556665552 2211 22334554333333322 2 455566777775443
Q ss_pred CCccccccccccHHHHHHHHHhcCCccccCCC
Q 009030 339 GLHVFDFLANSILKEVLSAIQKGKPGAFSPGR 370 (546)
Q Consensus 339 ~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~ 370 (546)
.+| +.++|-=-+..|.+++|++..|..
T Consensus 233 ----v~F-~KaFW~ltE~~l~~~~p~~~~~~v 259 (313)
T PF06350_consen 233 ----VDF-CKAFWNLTESELLSHLPSIVSPSV 259 (313)
T ss_pred ----HHH-HHHHhCcchhHHhhcchhhcCCce
Confidence 455 679999888999999998877753
No 118
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=21.42 E-value=5.4e+02 Score=22.33 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhH
Q 009030 54 FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRA 102 (546)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~ 102 (546)
|+....-++.....++.+---|++.|...+-.+...-...-..+..+..
T Consensus 10 L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~ 58 (143)
T PF05130_consen 10 LEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEK 58 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777788888888888888877777665554444444443
No 119
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.33 E-value=1.2e+03 Score=26.38 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHhh----hhhcCHHHHHHHHHHHHHhcChhhHHHHHHHHh
Q 009030 230 NMEKRIKSASLLLDASLGHCFVHG----LEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTV 286 (546)
Q Consensus 230 ~~~~RI~~i~~~L~~~L~~~~~~~----l~~~~~~~l~~cLr~Y~~ld~~~~ae~~~r~~v 286 (546)
++..+|..++..+...+... ... .+..+...-.++=.+|..|.+.-.|-.-+.+..
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l-~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALL-EELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNS 312 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999888888876332 221 112233333344455777777666666555443
No 120
>PRK09039 hypothetical protein; Validated
Probab=21.12 E-value=7.6e+02 Score=26.20 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHH-----------------HHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHH
Q 009030 54 FETLRSELQAHLSSLNH-----------------ELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRG 116 (546)
Q Consensus 54 Le~Lr~dLr~y~~~L~~-----------------eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~ 116 (546)
++..|.+|....+.... ++-..+.+.|.+-.-|...+-.+...+..+..-|...+.+..+.+.
T Consensus 93 a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~ 172 (343)
T PRK09039 93 AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQA 172 (343)
T ss_pred HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHH-HHHHHHH
Q 009030 117 ALEGSLVALQNGLKQR-SEAASAR 139 (546)
Q Consensus 117 ~v~~~~~~l~~~L~~R-~~l~~~k 139 (546)
.+++...+|+..|.+| .++...|
T Consensus 173 ~i~~L~~~L~~a~~~~~~~l~~~~ 196 (343)
T PRK09039 173 KIADLGRRLNVALAQRVQELNRYR 196 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
No 121
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.96 E-value=6.2e+02 Score=26.10 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=8.2
Q ss_pred cHHHHHHhhhHHHHHHHHHHH
Q 009030 92 DVDAAVVRMRAPLLELREKID 112 (546)
Q Consensus 92 G~d~~i~~l~~pL~~lr~~V~ 112 (546)
..++.++..+.-+..++.+|.
T Consensus 70 ~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334433333333333333
No 122
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=20.93 E-value=5.9e+02 Score=22.53 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=9.7
Q ss_pred cHHHHHHhhhHHHHHHHHHHHHHHH
Q 009030 92 DVDAAVVRMRAPLLELREKIDGFRG 116 (546)
Q Consensus 92 G~d~~i~~l~~pL~~lr~~V~~~r~ 116 (546)
.++..|...+.-|..++..|...+.
T Consensus 72 ~l~~~i~~q~~~l~~~~~~~e~~r~ 96 (141)
T TIGR02473 72 QLDQRIQQQQQELALLQQEVEAKRE 96 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333333333333333333
No 123
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.88 E-value=3.2e+02 Score=32.54 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=24.0
Q ss_pred CCChHHHHhhcc---CCCChHHHHHHHHHHHHHHHH
Q 009030 38 NFDSESYISELR---TFVPFETLRSELQAHLSSLNH 70 (546)
Q Consensus 38 dFdvd~FLs~~r---r~~sLe~Lr~dLr~y~~~L~~ 70 (546)
++|-+.|+..+. ..++|.++.++|+.....+..
T Consensus 605 ~~~~~~~~~~l~~~~t~~dL~~~a~~L~~la~~~~~ 640 (806)
T PF05478_consen 605 DIDFSLYLEQLCKPLTPVDLPSLANQLEALANSLPN 640 (806)
T ss_pred cCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 678888887665 356788888888877666654
No 124
>PRK14127 cell division protein GpsB; Provisional
Probab=20.73 E-value=3.8e+02 Score=23.85 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 009030 145 LLDTFHVVSKVEKL 158 (546)
Q Consensus 145 ll~~~~~v~klE~L 158 (546)
..++..++++||+-
T Consensus 87 n~DiLKRls~LEk~ 100 (109)
T PRK14127 87 NYDILKRLSNLEKH 100 (109)
T ss_pred hHHHHHHHHHHHHH
Confidence 35566777777765
No 125
>PF12854 PPR_1: PPR repeat
Probab=20.67 E-value=1e+02 Score=20.86 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=18.8
Q ss_pred HHHHHHHHhcChhhHHHHHHHH
Q 009030 264 NCLRAYAAIDNTRNAEEIFCNT 285 (546)
Q Consensus 264 ~cLr~Y~~ld~~~~ae~~~r~~ 285 (546)
..++.|+.-|+.++|.++|.+.
T Consensus 12 ~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 12 TLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC
Confidence 4567799999999999999874
No 126
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.61 E-value=1e+03 Score=25.06 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=11.8
Q ss_pred hhcCcccHHHHHHhhhHHHHHHHHHHHHHH
Q 009030 86 LSTKLVDVDAAVVRMRAPLLELREKIDGFR 115 (546)
Q Consensus 86 Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r 115 (546)
|...+.-+++.+..++.=...++.++...+
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444333
No 127
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.54 E-value=4.2e+02 Score=20.69 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=22.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 97 VVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSK 154 (546)
Q Consensus 97 i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~k 154 (546)
|+++..-+..+...|..++.+.++..++++ .-+.-.+-++.+++.|++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve----------~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVE----------KIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHc
Confidence 344444555555555555555554443333 222333444445666654
No 128
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=20.51 E-value=7.7e+02 Score=24.35 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=15.7
Q ss_pred ccCCCCh----HHHHHHHHHHHHHHHH
Q 009030 48 LRTFVPF----ETLRSELQAHLSSLNH 70 (546)
Q Consensus 48 ~rr~~sL----e~Lr~dLr~y~~~L~~ 70 (546)
.+|+..+ ..|++|++.|+..++.
T Consensus 18 e~~f~~~e~~~~kL~k~~K~Y~~av~~ 44 (211)
T cd07588 18 VNNFNKQQASANRLQKDLKNYLNSVRA 44 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455444 4588888888888874
No 129
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.37 E-value=1.2e+03 Score=25.80 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=33.6
Q ss_pred cccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 009030 90 LVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQ 131 (546)
Q Consensus 90 L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~ 131 (546)
....|..|..+++....+.++++....+++..-+.++..+++
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~ 269 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKE 269 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445778889999999999999988888888877777766665
No 130
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.37 E-value=8.1e+02 Score=23.92 Aligned_cols=39 Identities=8% Similarity=0.142 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhh
Q 009030 61 LQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRM 100 (546)
Q Consensus 61 Lr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l 100 (546)
--.|...++.-|-+=. +=+.++-++..+|......+..+
T Consensus 96 y~r~~~Svk~~~~~R~-~~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 96 YIRSIGSVRAAFAQRQ-KLWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444 45666777777666555443333
No 131
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.37 E-value=1.3e+03 Score=27.61 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=63.3
Q ss_pred HHHHHHHHHhHHHHhhhhhcCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHhhhcCCCCCccccCCCcchHHHHHHH
Q 009030 238 ASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQ 317 (546)
Q Consensus 238 i~~~L~~~L~~~~~~~l~~~~~~~l~~cLr~Y~~ld~~~~ae~~~r~~vV~P~l~~ii~~~~l~~~~~~s~~~L~~~y~~ 317 (546)
+-..+.+.|...|.+..++.+...++..| ...--+.+++|+.||--|.+ + ..| +++++
T Consensus 177 l~~~l~s~lt~~~lq~~ss~~ea~~Lsal------Q~s~~~lk~lRrlvv~G~~~------P-----~ks-----e~~eR 234 (978)
T KOG1993|consen 177 LAPILWSSLTMMFLQSVSSIKEATLLSAL------QRSYLTLKVLRRLVVFGFQN------P-----SKS-----EFFER 234 (978)
T ss_pred HHHHHhcchHHHHHHHhhcchhHHHHHHH------HHHHHHHHHHHHHHHhccCC------c-----chh-----hHHHH
Confidence 34455666666777766654443443332 22233567788877744321 1 111 36666
Q ss_pred HHHHHHhhhHHHHHHhhh--------------------cc--CCCccccccccccHHHHHHHHHhcCCcccc--------
Q 009030 318 IKQCVEKDCKFLLDISSA--------------------EN--SGLHVFDFLANSILKEVLSAIQKGKPGAFS-------- 367 (546)
Q Consensus 318 il~fv~~~~~~ll~it~~--------------------~~--~~~~~~dfl~nsvw~ev~~~l~~~l~~iFa-------- 367 (546)
+.+|++-+...++...+. -+ -..++|+|--- +.+-..++....-||.
T Consensus 235 l~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~---~~~~~~l~f~~~yIf~~~~~l~~~ 311 (978)
T KOG1993|consen 235 LLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFY---SPCPVKLEFSIDYIFDEYDFLGQI 311 (978)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccc---cccceeeehhhhhhhcccchhccc
Confidence 666665533322222110 00 12467777433 3333333444444444
Q ss_pred CCCchHHHHHHHHHHHHHHH
Q 009030 368 PGRPTQFLRNYKSSLDFLAY 387 (546)
Q Consensus 368 pG~Pd~F~~nY~~t~~Fl~~ 387 (546)
.|.-+.|-+.+.-++.-+.+
T Consensus 312 ~~~~~~fe~f~iq~l~mlK~ 331 (978)
T KOG1993|consen 312 SGHLSSFEEFFIQCLNMLKK 331 (978)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 47777788888888877664
No 132
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=20.26 E-value=2.6e+02 Score=25.73 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 009030 102 APLLELREKIDGFRGALEGSLVALQNGLKQRSE-AASAREVLELLLDT 148 (546)
Q Consensus 102 ~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~-l~~~k~~L~lll~~ 148 (546)
..++.+|.++...|..+.++=+.|+..++..-. -...|.+|+.-|.+
T Consensus 12 ps~e~yR~Kl~~~k~~F~~vW~~VK~~ve~~i~~~~~q~~LL~~AL~v 59 (132)
T PF10360_consen 12 PSFEHYRSKLSASKASFGEVWETVKGQVEEAIDPNEAQRNLLENALSV 59 (132)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345777888888888888877777776663211 11246677764433
No 133
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=20.23 E-value=1.1e+02 Score=21.76 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHHHHHHHhcChhhHHHHHHHHh
Q 009030 264 NCLRAYAAIDNTRNAEEIFCNTV 286 (546)
Q Consensus 264 ~cLr~Y~~ld~~~~ae~~~r~~v 286 (546)
..=++|..+|+.++|++++++.+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33467999999999999999865
No 134
>PF14425 Imm3: Immunity protein Imm3
Probab=20.12 E-value=1.3e+02 Score=27.14 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=23.0
Q ss_pred HHHHHHHhhhHHHHHHhhcCcccHHHHHHhh
Q 009030 70 HELIDLINRDYADFVNLSTKLVDVDAAVVRM 100 (546)
Q Consensus 70 ~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l 100 (546)
+||.+-||++|.+|.+... |..+++++.
T Consensus 7 ~El~e~i~E~y~e~~~~d~---s~~eaiar~ 34 (117)
T PF14425_consen 7 EELFEEINEFYDEYLNEDR---SYSEAIART 34 (117)
T ss_pred HHHHHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 6899999999999999887 666666544
No 135
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.12 E-value=1.8e+03 Score=27.87 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhh
Q 009030 148 TFHVVSKVEKLIKE 161 (546)
Q Consensus 148 ~~~~v~klE~LL~~ 161 (546)
..+++..+++|+..
T Consensus 1466 ~~~s~~el~~Li~~ 1479 (1758)
T KOG0994|consen 1466 MEESNRELRNLIQQ 1479 (1758)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445556666543
No 136
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=20.03 E-value=6.6e+02 Score=22.78 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=6.5
Q ss_pred HHHHHHHH---HHHhhhCCC
Q 009030 148 TFHVVSKV---EKLIKELPS 164 (546)
Q Consensus 148 ~~~~v~kl---E~LL~~l~~ 164 (546)
+.+.+.+- ++|++.+..
T Consensus 50 isdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT-
T ss_pred HHHHHHhchhhHHHHHHHhc
Confidence 34444443 344444444
Done!