Query 009030
Match_columns 546
No_of_seqs 167 out of 212
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jqq_A Conserved oligomeric go 96.6 0.082 2.8E-06 49.4 16.3 169 55-255 3-185 (204)
2 1vyk_A Oxygen-evolving enhance 70.9 59 0.002 29.2 12.5 64 26-115 30-93 (149)
3 3ghg_A Fibrinogen alpha chain; 62.8 88 0.003 33.6 13.2 37 49-86 50-86 (562)
4 3t98_B Nucleoporin NUP58/NUP45 61.7 9.4 0.00032 31.7 4.6 41 71-111 48-88 (93)
5 2ocy_A RAB guanine nucleotide 45.7 1.3E+02 0.0045 27.1 9.8 12 67-78 3-14 (154)
6 2p22_C Protein SRN2; endosome, 42.7 1.5E+02 0.005 27.7 10.0 10 21-30 25-34 (192)
7 2eqb_B RAB guanine nucleotide 37.2 1.8E+02 0.0061 24.2 8.6 48 96-143 6-53 (97)
8 1jcd_A Major outer membrane li 36.7 49 0.0017 24.4 4.5 24 98-121 7-30 (52)
9 1x8y_A Lamin A/C; structural p 33.6 1.8E+02 0.0063 23.2 8.2 6 137-142 74-79 (86)
10 3v86_A De novo design helix; c 33.0 81 0.0028 19.4 4.2 21 106-126 4-24 (27)
11 3r2p_A Apolipoprotein A-I; amp 32.0 2.1E+02 0.0072 26.0 9.3 46 112-161 136-181 (185)
12 3ghg_A Fibrinogen alpha chain; 31.9 1.5E+02 0.0051 31.9 8.9 32 54-93 66-97 (562)
13 1gk6_A Vimentin; intermediate 30.5 1.7E+02 0.0057 21.8 7.8 10 96-105 8-17 (59)
14 3hnw_A Uncharacterized protein 28.8 2.9E+02 0.01 24.1 9.2 44 84-127 64-107 (138)
15 1uru_A Amphiphysin; endocytosi 28.6 3.5E+02 0.012 24.9 13.2 64 43-108 38-106 (244)
16 1deq_A Fibrinogen (alpha chain 27.2 3.4E+02 0.012 27.9 10.3 30 49-78 53-82 (390)
17 3tnu_B Keratin, type II cytosk 25.8 3.1E+02 0.011 23.4 9.7 41 103-143 76-116 (129)
18 3ls0_A SLL1638 protein, PSBQ; 24.3 3.6E+02 0.012 23.6 9.6 32 70-113 40-72 (133)
19 2a0b_A HPT domain; sensory tra 21.6 2.6E+02 0.009 23.2 7.4 39 55-96 34-72 (125)
20 3i00_A HIP-I, huntingtin-inter 21.5 3.8E+02 0.013 22.9 10.0 51 91-141 11-62 (120)
21 2l7b_A Apolipoprotein E, APO-E 21.5 3.1E+02 0.011 27.2 8.9 50 51-104 135-189 (307)
22 2akf_A Coronin-1A; coiled coil 21.2 1.7E+02 0.0058 18.8 4.3 18 227-244 14-31 (32)
23 2xdj_A Uncharacterized protein 20.7 2.5E+02 0.0087 22.4 6.5 32 97-128 22-53 (83)
No 1
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.082 Score=49.42 Aligned_cols=169 Identities=14% Similarity=0.210 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHH-H---HHHhhhHHHHHHHHHHHH-HHHHHHhHHHHHHHHH
Q 009030 55 ETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVD-A---AVVRMRAPLLELREKIDG-FRGALEGSLVALQNGL 129 (546)
Q Consensus 55 e~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d-~---~i~~l~~pL~~lr~~V~~-~r~~v~~~~~~l~~~L 129 (546)
++|..||...++.+.+.|+|=||.+|.|+.+++.--.|-+ + .+.+++.+|.+|..++.. ...++.+..+.+.+.+
T Consensus 3 D~L~~dls~Lsq~m~~~LLe~i~~~YddY~~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l 82 (204)
T 2jqq_A 3 DSLIRDLSGLSQKMVQTLLEQIRSNYDDYLTFSNTYTDEENETLINLEKTQSDLQKFMTQLDHLIKDDISNTQEIIKDVL 82 (204)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 6789999999999999999999999999999999998832 2 345555667777666665 3344555555556555
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHH-HHHHHHhhhCCCCCCCCCCcccchhhhhccCCCCCCCcccCCcccccchh
Q 009030 130 KQRSEAASAREVL------ELLLDTFHVV-SKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQS 202 (546)
Q Consensus 130 ~~R~~l~~~k~~L------~lll~~~~~v-~klE~LL~~l~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 202 (546)
+.-+++.+-...| ..++.+...+ ..|+.+-+.- | .+ .... .
T Consensus 83 ~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~~~---p----------------------ld------~eLc-~ 130 (204)
T 2jqq_A 83 EYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIE---P----------------------LE------EEIC-S 130 (204)
T ss_dssp HHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHTSS---C----------------------CC------HHHH-H
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC---C----------------------Cc------HHHH-H
Confidence 5555555444322 1112222211 1233332110 0 00 0000 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--CCcchHhHHHHHHHHHHHHHHHHhHHHHhhhh
Q 009030 203 MLLERIASEMNRLKFYIAHAQ--NLPFIENMEKRIKSASLLLDASLGHCFVHGLE 255 (546)
Q Consensus 203 ~~LeRiA~e~~~L~~~~~~~~--~~pfv~~~~~RI~~i~~~L~~~L~~~~~~~l~ 255 (546)
.+..++-.-+...+....... +-|++..++.-...+-.+++..|.-....+++
T Consensus 131 ~l~~qL~~L~~~~~~ll~~l~dl~Sp~l~h~RN~yq~i~q~Fqi~lk~LtdkClE 185 (204)
T 2jqq_A 131 GLIEQLYKLITASRRILESCADSNSPYIHHLRNDYQDLLQEFQISLKILTEKCLE 185 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 123333333334444344443 57999999988888888888888666555555
No 2
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=70.89 E-value=59 Score=29.18 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=36.8
Q ss_pred CCccCcCCCCCCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHH
Q 009030 26 PLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLL 105 (546)
Q Consensus 26 ~l~F~~~~F~~~dFdvd~FLs~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~ 105 (546)
.|+.+|+.|.-+.-+|.+=+... +.+-+.| .+|=++|++++=.|| -+.||.|+.
T Consensus 30 ~l~~~k~~f~~~~l~~~~a~~rI-------------k~~a~~i-~~vk~lI~k~~W~~v------------rn~LR~~~~ 83 (149)
T 1vyk_A 30 TLPYTKDRFYLQPLPPTEAAQRA-------------KVSASEI-LNVKQFIDRKAWPSL------------QNDLRLRAS 83 (149)
T ss_dssp ----CTTCCEECCCCHHHHHHHH-------------HHHHHHH-HTTHHHHHTTCHHHH------------HHHHHHHHH
T ss_pred CccccccccccCCCCHHHHHHHH-------------HHHHHHH-HHHHHHhhhccHHHH------------HHHHHHhHH
Confidence 46666899988888888766542 3333333 223367777776554 356666676
Q ss_pred HHHHHHHHHH
Q 009030 106 ELREKIDGFR 115 (546)
Q Consensus 106 ~lr~~V~~~r 115 (546)
.++.++..+-
T Consensus 84 ~Lr~Dl~~li 93 (149)
T 1vyk_A 84 YLRYDLKTVI 93 (149)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.77 E-value=88 Score=33.61 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=28.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 009030 49 RTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNL 86 (546)
Q Consensus 49 rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~L 86 (546)
|-...|+.--.||....+.|++++-++ .++|.+--+.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl-sKnsKdseqy 86 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY-QKNNKDSHSL 86 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH-HhhchhHHHH
Confidence 334556667788999999999999998 8888884444
No 4
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=61.70 E-value=9.4 Score=31.69 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=33.0
Q ss_pred HHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHH
Q 009030 71 ELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKI 111 (546)
Q Consensus 71 eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V 111 (546)
+|...+.+=|+.||.|++.+-.+.+.|+.++.-=..+|+.+
T Consensus 48 ~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~ 88 (93)
T 3t98_B 48 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMF 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999998888888777776666665543
No 5
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.74 E-value=1.3e+02 Score=27.06 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhh
Q 009030 67 SLNHELIDLINR 78 (546)
Q Consensus 67 ~L~~eLveLIN~ 78 (546)
.|+..||.-||+
T Consensus 3 sLStKLI~Ain~ 14 (154)
T 2ocy_A 3 ALSTQLIESVDK 14 (154)
T ss_dssp THHHHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 477778888875
No 6
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=42.68 E-value=1.5e+02 Score=27.67 Aligned_cols=10 Identities=20% Similarity=0.046 Sum_probs=4.3
Q ss_pred CCCCCCCccC
Q 009030 21 PADSHPLWFK 30 (546)
Q Consensus 21 p~~~~~l~F~ 30 (546)
|..+.|||..
T Consensus 25 ~~~~~~LP~~ 34 (192)
T 2p22_C 25 KSKNIPLPEG 34 (192)
T ss_dssp -CCCCCCSSG
T ss_pred cccCCCCCHH
Confidence 4444455443
No 7
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.19 E-value=1.8e+02 Score=24.15 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 96 AVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLE 143 (546)
Q Consensus 96 ~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~ 143 (546)
.++.++.-+.++..++..+..++......+...-..|..+...+.-++
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie 53 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN 53 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777777777766666666666666555
No 8
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=36.73 E-value=49 Score=24.40 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=9.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhH
Q 009030 98 VRMRAPLLELREKIDGFRGALEGS 121 (546)
Q Consensus 98 ~~l~~pL~~lr~~V~~~r~~v~~~ 121 (546)
..+...+..+-.+|..+...+...
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333
No 9
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=33.61 E-value=1.8e+02 Score=23.22 Aligned_cols=6 Identities=33% Similarity=0.589 Sum_probs=2.4
Q ss_pred HHHHHH
Q 009030 137 SAREVL 142 (546)
Q Consensus 137 ~~k~~L 142 (546)
..|++|
T Consensus 74 tYRkLL 79 (86)
T 1x8y_A 74 AYRKLL 79 (86)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334443
No 10
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=33.04 E-value=81 Score=19.37 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 009030 106 ELREKIDGFRGALEGSLVALQ 126 (546)
Q Consensus 106 ~lr~~V~~~r~~v~~~~~~l~ 126 (546)
+++.+|.+.+.++....++++
T Consensus 4 qlkdevgelkgevralkdevk 24 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHh
Confidence 455556555555555554443
No 11
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=31.98 E-value=2.1e+02 Score=26.00 Aligned_cols=46 Identities=7% Similarity=0.079 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009030 112 DGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKE 161 (546)
Q Consensus 112 ~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~lll~~~~~v~klE~LL~~ 161 (546)
.+++..+....++++.+|.+ .+.+-|+.|.=+ +.+.-.+|+..+.+
T Consensus 136 e~Lr~~L~p~~e~lr~~l~~--~~e~lk~~l~Py--~ee~k~kl~~~lee 181 (185)
T 3r2p_A 136 HELQEKLSPLGEEMRDRARA--HVDALRTHLAPY--SDELRQRLAARLEA 181 (185)
T ss_dssp TTTTTTSHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhh--HHHHHHHHHHHHHH
Confidence 33444444444455544442 233444443322 23333455555544
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.90 E-value=1.5e+02 Score=31.87 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccH
Q 009030 54 FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDV 93 (546)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~ 93 (546)
+++||+.|.+| +..+++. |+-|-++...|++-
T Consensus 66 INELKnqLEdl-sKnsKds-------eqy~k~~~E~Lr~r 97 (562)
T 3ghg_A 66 INKLKNSLFEY-QKNNKDS-------HSLTTNIMEILRGD 97 (562)
T ss_dssp HHHHHHHHTHH-HHHHHHH-------HHHHHHHHHTTSSH
T ss_pred HHHHHHHHHHH-HhhchhH-------HHHHHHHHHHHHHH
Confidence 55666666666 3333333 33345566666653
No 13
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=30.47 E-value=1.7e+02 Score=21.78 Aligned_cols=10 Identities=10% Similarity=-0.011 Sum_probs=3.6
Q ss_pred HHHhhhHHHH
Q 009030 96 AVVRMRAPLL 105 (546)
Q Consensus 96 ~i~~l~~pL~ 105 (546)
.|..+...|.
T Consensus 8 ~i~~le~el~ 17 (59)
T 1gk6_A 8 KVEELLSKNY 17 (59)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.76 E-value=2.9e+02 Score=24.12 Aligned_cols=44 Identities=7% Similarity=0.144 Sum_probs=23.0
Q ss_pred HHhhcCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009030 84 VNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQN 127 (546)
Q Consensus 84 V~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~ 127 (546)
+|+...|--..+....+..-+....+++...+.++.+....+++
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~ 107 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAES 107 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555444443
No 15
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=28.58 E-value=3.5e+02 Score=24.93 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=32.0
Q ss_pred HHHhhccCCCCh----HHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHhhcCcccHHHHHHhhhHHHHHHH
Q 009030 43 SYISELRTFVPF----ETLRSELQAHLSSLNHELIDLINRDYAD-FVNLSTKLVDVDAAVVRMRAPLLELR 108 (546)
Q Consensus 43 ~FLs~~rr~~sL----e~Lr~dLr~y~~~L~~eLveLIN~DY~D-FV~Lss~L~G~d~~i~~l~~pL~~lr 108 (546)
+|-...+++..+ ..|..+.+.|+..++.-+ ..-. ..++ |..+.....++.+.+..+..-+..++
T Consensus 38 ~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~-~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (244)
T 1uru_A 38 IFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQ-AASK-TLMDSVCEIYEPQWSGYDALQAQTGASESLW 106 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHSCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHhCCCCCCchHHHHHHHHHHHHH
Confidence 444433444444 458888888888877522 2111 1222 44455544455555544444344333
No 16
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.20 E-value=3.4e+02 Score=27.95 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=20.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 009030 49 RTFVPFETLRSELQAHLSSLNHELIDLINR 78 (546)
Q Consensus 49 rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~ 78 (546)
|=...|+.--.+++.....|+++|.++...
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 334556666677777777788877777643
No 17
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.82 E-value=3.1e+02 Score=23.38 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009030 103 PLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLE 143 (546)
Q Consensus 103 pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R~~l~~~k~~L~ 143 (546)
.+..++..|......+.....++...+.+-..+-.-|..|+
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld 116 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALD 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554444444444444444443
No 18
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=24.26 E-value=3.6e+02 Score=23.58 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=19.3
Q ss_pred HH-HHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHH
Q 009030 70 HE-LIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDG 113 (546)
Q Consensus 70 ~e-LveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~ 113 (546)
.| |-.+||+.+=-|+. +-|+.||.++|.++..
T Consensus 40 ~e~L~~lI~~~~W~~~R------------n~IhGPlg~lr~~m~~ 72 (133)
T 3ls0_A 40 EKRLQGLIADQNWVDTQ------------TYIHGPLGQLRRDMLG 72 (133)
T ss_dssp HHTHHHHHHTTCHHHHH------------HHHHTTTTTHHHHHHH
T ss_pred HHHHHHHhhhcchHHHH------------HHHhchHHHHHHHHHH
Confidence 46 88899987655443 3344555555555444
No 19
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=21.58 E-value=2.6e+02 Score=23.21 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHH
Q 009030 55 ETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAA 96 (546)
Q Consensus 55 e~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~ 96 (546)
+....+...++..|+..+. +.||.....+.=.|+|.-..
T Consensus 34 ~~F~~e~~~~l~~L~~a~~---~~d~~~~~~~aH~LKGsa~~ 72 (125)
T 2a0b_A 34 AVFEKMMPGYVSVLESNLT---AQDKKGIVEEGHKIKGAAGS 72 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHH
Confidence 3344555555555555444 46888877777777776553
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.54 E-value=3.8e+02 Score=22.89 Aligned_cols=51 Identities=10% Similarity=0.259 Sum_probs=38.9
Q ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHH
Q 009030 91 VDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQR-SEAASAREV 141 (546)
Q Consensus 91 ~G~d~~i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~L~~R-~~l~~~k~~ 141 (546)
..-|..|..++.-+..++.++..++.+-...+..+++.+.+- .++.+.|..
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778999999999999999999888888888877766663 555555543
No 21
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=21.52 E-value=3.1e+02 Score=27.22 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=27.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHhhcCccc-HHHHHHhhhHHH
Q 009030 51 FVPFETLRSELQAHLSSLNHELIDLINRDYAD----FVNLSTKLVD-VDAAVVRMRAPL 104 (546)
Q Consensus 51 ~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~D----FV~Lss~L~G-~d~~i~~l~~pL 104 (546)
...+|++|..|.-|...|+ +-+|.|..+ +--.+..|+. ++..+..++.-|
T Consensus 135 ~~~~eelr~kL~Py~~EL~----~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~~L 189 (307)
T 2l7b_A 135 GQSTEELRVRLASHLRKLR----KRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERL 189 (307)
T ss_dssp SCCSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666665554 444555544 4455556653 555555555444
No 22
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.19 E-value=1.7e+02 Score=18.84 Aligned_cols=18 Identities=11% Similarity=0.374 Sum_probs=14.2
Q ss_pred chHhHHHHHHHHHHHHHH
Q 009030 227 FIENMEKRIKSASLLLDA 244 (546)
Q Consensus 227 fv~~~~~RI~~i~~~L~~ 244 (546)
.++++++|+++++.+++.
T Consensus 14 ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 14 IVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 467789999998888764
No 23
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.74 E-value=2.5e+02 Score=22.43 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=20.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009030 97 VVRMRAPLLELREKIDGFRGALEGSLVALQNG 128 (546)
Q Consensus 97 i~~l~~pL~~lr~~V~~~r~~v~~~~~~l~~~ 128 (546)
+..+..-|..++.+|...|+.++....+++..
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44455556677777777777777666666543
Done!