Query 009030
Match_columns 546
No_of_seqs 167 out of 212
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 17:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009030.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009030hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nzea_ a.24.18.1 (A:) Oxygen- 27.8 1.3E+02 0.0093 23.4 11.4 49 53-114 7-55 (112)
2 d2a0ba_ a.24.10.1 (A:) Aerobic 27.8 1E+02 0.0075 23.4 8.0 50 47-96 14-67 (118)
3 d1lvfa_ a.47.2.1 (A:) Syntaxin 26.3 83 0.006 24.2 7.0 18 55-72 41-58 (106)
4 d1gzsb_ a.168.1.1 (B:) GEF dom 25.5 27 0.002 29.0 3.7 32 399-430 111-159 (165)
5 d1o5ha_ a.191.1.1 (A:) Hypothe 25.0 1.2E+02 0.0088 26.0 8.6 43 50-92 50-92 (200)
6 d1gs9a_ a.24.1.1 (A:) Apolipop 23.7 1.1E+02 0.0079 24.5 7.6 23 54-76 43-65 (144)
7 d1s0pa_ a.192.1.1 (A:) N-termi 18.2 97 0.007 26.3 6.1 20 73-92 6-25 (176)
8 d1gs9a_ a.24.1.1 (A:) Apolipop 16.6 1.9E+02 0.014 22.8 7.7 24 51-74 2-25 (144)
9 d1seta1 a.2.7.1 (A:1-110) Sery 15.5 2.2E+02 0.016 21.4 7.7 13 154-166 93-105 (110)
10 d1joya_ a.30.2.1 (A:) EnvZ his 14.1 1.7E+02 0.012 20.0 5.8 18 98-115 21-38 (67)
No 1
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=27.80 E-value=1.3e+02 Score=23.38 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCcccHHHHHHhhhHHHHHHHHHHHHH
Q 009030 53 PFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGF 114 (546)
Q Consensus 53 sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G~d~~i~~l~~pL~~lr~~V~~~ 114 (546)
|.++-..-.++.-+.| .+|-++|++++=.+| .+.||.|+..++.++..+
T Consensus 7 ~p~eaa~ri~~sa~~L-~~l~~lI~k~~W~~v------------~~~Lr~~~~~Lr~dl~~l 55 (112)
T d1nzea_ 7 PPTEAAQRAKVSASEI-LNVKQFIDRKAWPSL------------QNDLRLRASYLRYDLKTV 55 (112)
T ss_dssp CTTTHHHHHHHHHHHH-HTTHHHHHTTCHHHH------------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHhhccHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 3344444556666666 777788888776554 355666666666665544
No 2
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=27.80 E-value=1e+02 Score=23.37 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=28.2
Q ss_pred hccCCCChHHHHHHHHHHHHHHHHHHHHH---H-hhhHHHHHHhhcCcccHHHH
Q 009030 47 ELRTFVPFETLRSELQAHLSSLNHELIDL---I-NRDYADFVNLSTKLVDVDAA 96 (546)
Q Consensus 47 ~~rr~~sLe~Lr~dLr~y~~~L~~eLveL---I-N~DY~DFV~Lss~L~G~d~~ 96 (546)
++.....-+.+..=+..|.+.....+-+| + ++||..+-..+=.|+|.-..
T Consensus 14 ~l~~~~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~d~~~~~~~aH~LKgsa~~ 67 (118)
T d2a0ba_ 14 QYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGS 67 (118)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555444433332 2 47888888888888876554
No 3
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.26 E-value=83 Score=24.20 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009030 55 ETLRSELQAHLSSLNHEL 72 (546)
Q Consensus 55 e~Lr~dLr~y~~~L~~eL 72 (546)
..+++||+.=++.++..|
T Consensus 41 ~~~~~eL~~~l~siewdL 58 (106)
T d1lvfa_ 41 DWTTNELRNNLRSIEWDL 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 345666666666555443
No 4
>d1gzsb_ a.168.1.1 (B:) GEF domain of SopE toxin {Salmonella typhimurium [TaxId: 90371]}
Probab=25.47 E-value=27 Score=29.00 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=24.2
Q ss_pred HHHhhchhHHHHH-----------------HhhccchhHHHHHHHHHHh
Q 009030 399 AKFRAEAIYVEFM-----------------KQWNVGVYFSLRFQEIAGA 430 (546)
Q Consensus 399 ~~lR~~~~y~~f~-----------------~rWnLpVYFqLRfqEIa~~ 430 (546)
.+|+++++|.+|+ .+|..|+=||++.+.|+..
T Consensus 111 h~~~n~~qq~~fk~YArq~~m~lVap~~~e~~~~tp~~F~~tve~i~~~ 159 (165)
T d1gzsb_ 111 RMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANK 159 (165)
T ss_dssp GGGSSHHHHHHHHHHHHHHHHHHHGGGGTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHhhh
Confidence 4566666666665 6899999999999888753
No 5
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=24.99 E-value=1.2e+02 Score=26.01 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccc
Q 009030 50 TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVD 92 (546)
Q Consensus 50 r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~DFV~Lss~L~G 92 (546)
++..+++--+++..-...++.+|++|+-+|=..|-.+....+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~l~~l~deD~~aF~~vm~a~kl 92 (200)
T d1o5ha_ 50 GYEDVEPEMERIVEAMEEARLKLFDLAKKDMEAFEKVMKAYKS 92 (200)
T ss_dssp TCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 4556667777788888889999999999999999999887653
No 6
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=23.70 E-value=1.1e+02 Score=24.51 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 009030 54 FETLRSELQAHLSSLNHELIDLI 76 (546)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLI 76 (546)
+.+++.+|..|...|+..|.-++
T Consensus 43 l~e~~~~l~~~~~~l~~~l~p~~ 65 (144)
T d1gs9a_ 43 MDETMKELKAYKSELEEQLTPVA 65 (144)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777654433
No 7
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=18.18 E-value=97 Score=26.31 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=17.5
Q ss_pred HHHHhhhHHHHHHhhcCccc
Q 009030 73 IDLINRDYADFVNLSTKLVD 92 (546)
Q Consensus 73 veLIN~DY~DFV~Lss~L~G 92 (546)
=++||.....|+.||..|-|
T Consensus 6 D~~i~~~v~~~~~~s~~Igg 25 (176)
T d1s0pa_ 6 QNLVDQHITPFVALSKKLAP 25 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHhCH
Confidence 37899999999999999944
No 8
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=16.63 E-value=1.9e+02 Score=22.80 Aligned_cols=24 Identities=8% Similarity=-0.157 Sum_probs=16.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 009030 51 FVPFETLRSELQAHLSSLNHELID 74 (546)
Q Consensus 51 ~~sLe~Lr~dLr~y~~~L~~eLve 74 (546)
+++.|.+.+-+..|...|+..--+
T Consensus 2 ~~~~e~~~d~f~~y~~~l~~~a~~ 25 (144)
T d1gs9a_ 2 GQRWELALGRFWDYLRWVQTLSEQ 25 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhHHH
Confidence 456777888888888877764333
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=15.49 E-value=2.2e+02 Score=21.36 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=6.7
Q ss_pred HHHHHhhhCCCCC
Q 009030 154 KVEKLIKELPSLP 166 (546)
Q Consensus 154 klE~LL~~l~~~p 166 (546)
++..++..++..|
T Consensus 93 ~l~~~ll~iPNi~ 105 (110)
T d1seta1 93 RLEALLLQVPLPP 105 (110)
T ss_dssp HHHHHHTTCCCCC
T ss_pred HHHHHHHcCCCCC
Confidence 4555555555544
No 10
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]}
Probab=14.12 E-value=1.7e+02 Score=19.96 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=12.9
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 009030 98 VRMRAPLLELREKIDGFR 115 (546)
Q Consensus 98 ~~l~~pL~~lr~~V~~~r 115 (546)
.++|.||..++..++...
T Consensus 21 HeLRTPLt~i~~~~e~l~ 38 (67)
T d1joya_ 21 HDLRTPLTRIRLATEMMS 38 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 467889988887666443
Done!