BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009031
(546 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EFY|A Chain A, Structure Of The Cyclomodulin Cif From Pathogenic
Escherichia Coli
pdb|3EFY|B Chain B, Structure Of The Cyclomodulin Cif From Pathogenic
Escherichia Coli
Length = 195
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 300 VLKIYLDDDSFSYAVEMLQNFRSLVRNLEKIDPRKMKREEKLAFWINIHNALVMHAYLA 358
++K++LD D FSY E Q +LE++ R E +F + +++ + HAY+
Sbjct: 17 IMKLFLDKDGFSYCFENEQTL-----SLEQLQERLSCMPECKSFVLRVNDGALGHAYIV 70
>pdb|3ZXP|A Chain A, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|B Chain B, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|C Chain C, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
Length = 407
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 450 AKNVFRDLKLAKEEFIQASVYIH-KESKIFLPKIIYYFAKDMSLDIQGLLELITGCVAEA 508
AK V R LK+A A ++ H KES LPK+I K L+ + + + C AEA
Sbjct: 146 AKEVHRSLKIA------AGIFKHLKESH--LPKLITPAEKGRDLESRLIEAYVIQCQAEA 197
Query: 509 QQKAMRKCIKGKH 521
Q+ + + I+ KH
Sbjct: 198 QEVTIARAIELKH 210
>pdb|3ULY|A Chain A, Crystal Structure Of Brox Bro1 Domain In Complex With The
C-Terminal Tails Of Chmp5
pdb|3UM0|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 410
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 450 AKNVFRDLKLAKEEFIQASVYIH-KESKIFLPKIIYYFAKDMSLDIQGLLELITGCVAEA 508
AK V R LK+A A ++ H KES LPK+I K L+ + + + C AEA
Sbjct: 139 AKEVHRSLKIA------AGIFKHLKESH--LPKLITPAEKGRDLESRLIEAYVIQCQAEA 190
Query: 509 QQKAMRKCIKGKH 521
Q+ + + I+ KH
Sbjct: 191 QEVTIARAIELKH 203
>pdb|3R9M|A Chain A, Crystal Structure Of The Brox Bro1 Domain
Length = 376
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 450 AKNVFRDLKLAKEEFIQASVYIH-KESKIFLPKIIYYFAKDMSLDIQGLLELITGCVAEA 508
AK V R LK+A A ++ H KES LPK+I K L+ + + + C AEA
Sbjct: 142 AKEVHRSLKIA------AGIFKHLKESH--LPKLITPAEKGRDLESRLIEAYVIQCQAEA 193
Query: 509 QQKAMRKCIKGKH 521
Q+ + + I+ KH
Sbjct: 194 QEVTIARAIELKH 206
>pdb|3UM3|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp4b
Length = 411
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 450 AKNVFRDLKLAKEEFIQASVYIH-KESKIFLPKIIYYFAKDMSLDIQGLLELITGCVAEA 508
AK V R LK+A A ++ H KES LPK+I K L+ + + + C AEA
Sbjct: 140 AKEVHRSLKIA------AGIFKHLKESH--LPKLITPAEKGRDLESRLIEAYVIQCQAEA 191
Query: 509 QQKAMRKCIKGKH 521
Q+ + + I+ KH
Sbjct: 192 QEVTIARAIELKH 204
>pdb|3UM1|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM1|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 376
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 450 AKNVFRDLKLAKEEFIQASVYIH-KESKIFLPKIIYYFAKDMSLDIQGLLELITGCVAEA 508
AK V R LK+A A ++ H KES LPK+I K L+ + + + C AEA
Sbjct: 139 AKEVHRSLKIA------AGIFKHLKESH--LPKLITPAEKGRDLESRLIEAYVIQCQAEA 190
Query: 509 QQKAMRKCIKGKH 521
Q+ + + I+ KH
Sbjct: 191 QEVTIARAIELKH 203
>pdb|1F6D|A Chain A, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
E. Coli.
pdb|1F6D|B Chain B, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
E. Coli.
pdb|1F6D|C Chain C, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
E. Coli.
pdb|1F6D|D Chain D, The Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
E. Coli
Length = 376
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 119 AFEEHLHTLSSISGTHLEYKSGSPTPIVPN--KPVNRL 154
FEE H L+ I+ TH + + P + PN +PVNR+
Sbjct: 221 GFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRI 258
>pdb|1VGV|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine_2 Epimerase
pdb|1VGV|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine_2 Epimerase
pdb|1VGV|C Chain C, Crystal Structure Of Udp-N-Acetylglucosamine_2 Epimerase
pdb|1VGV|D Chain D, Crystal Structure Of Udp-N-Acetylglucosamine_2 Epimerase
Length = 384
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 119 AFEEHLHTLSSISGTHLEYKSGSPTPIVPN--KPVNRL 154
FEE H L+ I+ TH + + P + PN +PVNR+
Sbjct: 221 GFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRI 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,439,248
Number of Sequences: 62578
Number of extensions: 611158
Number of successful extensions: 1354
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1351
Number of HSP's gapped (non-prelim): 12
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)