BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009031
         (546 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P29249|MVP_RDVA Movement protein OS=Rice dwarf virus (isolate Akita) PE=3 SV=1
          Length = 509

 Score = 34.7 bits (78), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 354 HAYLAYGTRNSVKSTSIMKAAYNVGGQYVDAYVIQSSILGIRPHFSAPWLQALFSPGRKL 413
           H     G  +++ S  ++K A ++GGQ VDA  I S        F+      ++SP  + 
Sbjct: 119 HKKFVEGKSHNILSVEMLKRALSIGGQNVDANKISSFWFATYTIFT-----TVYSPRLRY 173

Query: 414 KTGSTKHVYAL 424
           + GS+K + AL
Sbjct: 174 QAGSSKRIIAL 184


>sp|Q85438|MVP_RDVF Movement protein OS=Rice dwarf virus (isolate Fujian) PE=2 SV=1
          Length = 509

 Score = 34.7 bits (78), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 354 HAYLAYGTRNSVKSTSIMKAAYNVGGQYVDAYVIQSSILGIRPHFSAPWLQALFSPGRKL 413
           H     G  +++ S  ++K A ++GGQ VDA  I S        F+      ++SP  + 
Sbjct: 119 HKKFVEGKSHNILSVEMLKRALSIGGQNVDANKISSFWFATYTIFT-----TVYSPRLRY 173

Query: 414 KTGSTKHVYAL 424
           + GS+K + AL
Sbjct: 174 QAGSSKRIIAL 184


>sp|C1DFU4|RECF_AZOVD DNA replication and repair protein RecF OS=Azotobacter vinelandii
           (strain DJ / ATCC BAA-1303) GN=recF PE=3 SV=1
          Length = 365

 Score = 33.9 bits (76), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 29/69 (42%)

Query: 72  TSFQSIKSIPSHGSTAPKSSAELMKEIAVLEAEIMHLERYLLSLYRTAFEEHLHTLSSIS 131
           T+ +   S   HG   P S A   +E+ +   EI    R  + + +  FE  LH L  + 
Sbjct: 157 TALRQRNSWLRHGRIDPVSQAAWDRELCLASEEIDSYRRSYIQVLKPVFESVLHELVELD 216

Query: 132 GTHLEYKSG 140
           G  L Y  G
Sbjct: 217 GLTLSYYRG 225


>sp|B1J3Y4|RECF_PSEPW DNA replication and repair protein RecF OS=Pseudomonas putida
           (strain W619) GN=recF PE=3 SV=1
          Length = 367

 Score = 32.7 bits (73), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 83  HGSTAPKSSAELMKEIAVLEAEIMHLERYLLSLYRTAFEEHLHTLSSISGTHLEYKSG 140
           HG+  P S A   +E+ +  AEI    R  +   +  FE+ L  L  + G  L Y  G
Sbjct: 168 HGTLDPASQAAWDRELCLASAEIDEYRRNYIKALKPVFEQTLSELVELDGLTLSYYRG 225


>sp|P96010|P3H1_STRSQ L-proline cis-3-hydroxylase 1 OS=Streptomyces sp. PE=1 SV=1
          Length = 290

 Score = 32.3 bits (72), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 18  PPQPSSLSVYENGFWENALLLNVSPGLSSLSNPIVRLERTL---PHQPSLCSHSEEATSF 74
           P        + NGFW+N  L N S G         RL R L   P QP+   H+E+    
Sbjct: 27  PTVEEEYDEFSNGFWKNIPLYNASGGSED------RLYRDLEGSPAQPT--KHAEQVPYL 78

Query: 75  QSIKSIPSHGSTAPKSSAELMKEIAVL-EAEIMHLERYLLSLYRT 118
             I +   +G     +    +K   V+   + + L+R L   +RT
Sbjct: 79  NEIITTVYNGERLQMARTRNLKNAVVIPHRDFVELDRELDQYFRT 123


>sp|Q5RDD7|BROX_PONAB BRO1 domain-containing protein BROX OS=Pongo abelii GN=BROX PE=2
           SV=1
          Length = 411

 Score = 32.3 bits (72), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 9/73 (12%)

Query: 450 AKNVFRDLKLAKEEFIQASVYIH-KESKIFLPKIIYYFAKDMSLDIQGLLELITGCVAEA 508
           AK V R LK+A      A ++ H KES I  PK+I    K   L+ + +   +  C AEA
Sbjct: 140 AKEVHRSLKIA------AGIFKHLKESHI--PKLITPAEKGRDLESRLIEAYVIQCQAEA 191

Query: 509 QQKAMRKCIKGKH 521
           Q+  + + I+ KH
Sbjct: 192 QEVTIARAIELKH 204


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,569,996
Number of Sequences: 539616
Number of extensions: 8518217
Number of successful extensions: 24286
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 24226
Number of HSP's gapped (non-prelim): 74
length of query: 546
length of database: 191,569,459
effective HSP length: 122
effective length of query: 424
effective length of database: 125,736,307
effective search space: 53312194168
effective search space used: 53312194168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)