Query 009031
Match_columns 546
No_of_seqs 235 out of 519
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ra3_B P2F; coiled coil domain 86.6 0.47 1.6E-05 30.9 2.6 21 90-110 8-28 (28)
2 2wq1_A General control protein 60.3 7.9 0.00027 26.8 3.1 22 89-110 7-28 (33)
3 1kd8_A GABH AIV, GCN4 acid bas 57.8 12 0.00042 26.3 3.8 24 89-112 8-31 (36)
4 3m48_A General control protein 55.0 11 0.00037 26.1 3.1 21 89-109 7-27 (33)
5 3he4_A Synzip6; heterodimeric 46.1 20 0.00069 26.7 3.6 23 90-112 32-54 (56)
6 4dzn_A Coiled-coil peptide CC- 44.8 25 0.00085 23.7 3.5 16 93-108 13-28 (33)
7 1uo4_A General control protein 42.6 22 0.00076 24.7 3.1 21 89-109 8-28 (34)
8 1t2k_D Cyclic-AMP-dependent tr 42.0 22 0.00075 27.3 3.5 24 90-113 37-60 (61)
9 3he5_B Synzip2; heterodimeric 41.4 14 0.00047 27.2 2.1 22 89-110 31-52 (52)
10 3c3f_A Alpha/beta peptide with 40.3 26 0.00087 24.4 3.1 22 89-110 8-29 (34)
11 2lf0_A Uncharacterized protein 38.9 16 0.00054 32.4 2.4 50 46-109 7-56 (123)
12 1kd8_B GABH BLL, GCN4 acid bas 35.4 33 0.0011 24.1 3.1 23 89-111 8-30 (36)
13 3ra3_A P1C; coiled coil domain 35.0 18 0.00062 23.5 1.6 23 97-119 1-23 (28)
14 3c3g_A Alpha/beta peptide with 33.7 38 0.0013 23.4 3.1 21 89-109 7-27 (33)
15 2oxj_A Hybrid alpha/beta pepti 33.4 38 0.0013 23.6 3.1 21 89-109 8-28 (34)
16 1g6u_A Domain swapped dimer; d 32.7 58 0.002 23.6 4.1 24 96-119 20-43 (48)
17 2wuj_A Septum site-determining 31.0 25 0.00087 26.9 2.2 22 90-111 35-56 (57)
18 2wt7_A Proto-oncogene protein 30.3 57 0.002 25.2 4.2 22 91-112 39-60 (63)
19 2hy6_A General control protein 29.1 50 0.0017 23.0 3.1 22 89-110 8-29 (34)
20 4dzn_A Coiled-coil peptide CC- 27.9 1.2E+02 0.004 20.4 4.7 24 91-114 4-27 (33)
21 3he5_A Synzip1; heterodimeric 27.6 1.2E+02 0.004 22.1 5.0 12 93-104 7-18 (49)
22 2r2v_A GCN4 leucine zipper; co 26.7 58 0.002 22.7 3.1 22 89-110 8-29 (34)
23 2lic_A Vitellogenin; lipid tra 25.9 28 0.00094 23.7 1.4 12 21-32 19-30 (35)
24 1t3j_A Mitofusin 1; coiled coi 25.7 52 0.0018 28.1 3.4 25 89-113 47-71 (96)
25 4dac_A Computationally designe 25.4 25 0.00086 22.9 1.1 17 94-110 6-22 (28)
26 1jnm_A Proto-oncogene C-JUN; B 24.9 31 0.0011 26.6 1.8 17 94-110 27-43 (62)
27 1a93_B MAX protein, coiled coi 23.9 50 0.0017 23.1 2.4 24 90-113 8-31 (34)
28 4g1a_A AQ-C16C19 peptide; heli 23.7 36 0.0012 22.7 1.6 14 98-111 2-15 (32)
29 2bni_A General control protein 22.1 81 0.0028 22.0 3.1 21 89-109 8-28 (34)
30 1hjb_A Ccaat/enhancer binding 21.7 71 0.0024 26.7 3.5 30 90-120 44-73 (87)
31 2gzd_C RAB11 family-interactin 20.6 59 0.002 28.1 2.8 37 87-123 44-87 (107)
32 1fmh_A General control protein 20.4 1.6E+02 0.0055 19.8 4.2 26 91-116 3-28 (33)
No 1
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=86.64 E-value=0.47 Score=30.91 Aligned_cols=21 Identities=52% Similarity=0.613 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 009031 90 SSAELMKEIAVLEAEIMHLER 110 (546)
Q Consensus 90 ~~~eLi~EIA~LE~EV~~lE~ 110 (546)
....|-.|||.||-||.-|||
T Consensus 8 knarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 8 KNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHhcC
Confidence 456788999999999999986
No 2
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=60.29 E-value=7.9 Score=26.78 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLER 110 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE~ 110 (546)
..+.|||.++..||.||.+|-.
T Consensus 7 dKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3688999999999999999853
No 3
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=57.79 E-value=12 Score=26.30 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLERYL 112 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE~~l 112 (546)
..+.|||.|-..||.||.+|..-+
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467899999999999999997544
No 4
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=55.00 E-value=11 Score=26.14 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLE 109 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE 109 (546)
....|||.|-..||.||.+|-
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 468899999999999999985
No 5
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.09 E-value=20 Score=26.66 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 009031 90 SSAELMKEIAVLEAEIMHLERYL 112 (546)
Q Consensus 90 ~~~eLi~EIA~LE~EV~~lE~~l 112 (546)
....|-++||-||..|.+||+.|
T Consensus 32 dnanlekdianlekdianlerdv 54 (56)
T 3he4_A 32 DNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh
Confidence 34557777777777777777654
No 6
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=44.82 E-value=25 Score=23.67 Aligned_cols=16 Identities=56% Similarity=0.602 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 009031 93 ELMKEIAVLEAEIMHL 108 (546)
Q Consensus 93 eLi~EIA~LE~EV~~l 108 (546)
.|-+|||.|..||.-|
T Consensus 13 alkkeiaalkfeiaal 28 (33)
T 4dzn_A 13 ALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 7
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=42.56 E-value=22 Score=24.74 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLE 109 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE 109 (546)
....+||.+-..||.||.+|-
T Consensus 8 dKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 8 DKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 367899999999999999985
No 8
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.97 E-value=22 Score=27.33 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 009031 90 SSAELMKEIAVLEAEIMHLERYLL 113 (546)
Q Consensus 90 ~~~eLi~EIA~LE~EV~~lE~~ll 113 (546)
...+|-.||+.|+.||..|.+.||
T Consensus 37 ~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 37 LNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555443
No 9
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.40 E-value=14 Score=27.16 Aligned_cols=22 Identities=45% Similarity=0.456 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLER 110 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE~ 110 (546)
|-+..|-.|||-||-||..-||
T Consensus 31 kiianlrdeiarlenevasheq 52 (52)
T 3he5_B 31 KIIANLRDEIARLENEVASHEQ 52 (52)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 3455677788888888766554
No 10
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=40.30 E-value=26 Score=24.40 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLER 110 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE~ 110 (546)
....+||.|-..||.||.+|-.
T Consensus 8 dKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 3678999999999999999853
No 11
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=38.89 E-value=16 Score=32.39 Aligned_cols=50 Identities=36% Similarity=0.326 Sum_probs=34.4
Q ss_pred CCcchhHHhhhcCCCCCcccchhhhhhcccCccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 009031 46 SLSNPIVRLERTLPHQPSLCSHSEEATSFQSIKSIPSHGSTAPKSSAELMKEIAVLEAEIMHLE 109 (546)
Q Consensus 46 ~~~~~i~~L~k~L~~q~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~eLi~EIA~LE~EV~~lE 109 (546)
.+++||.+|..+|. .+.+.++.+..+ .+. .-..++..||+.|+.||.+|-
T Consensus 7 ~~K~Eiq~L~drLD-----~~~rKlaaa~~r------gd~---~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 7 VEKNEIKRLSDRLD-----AIRHQQADLSLV------EAA---DKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp SHHHHHHHHHHHHH-----HHHHHHHHSCTT------TCT---THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHhC------CCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999884 344445543322 222 257889999999999999885
No 12
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.41 E-value=33 Score=24.14 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLERY 111 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE~~ 111 (546)
..+.|||.+-..||.||.+|-.-
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 36889999999999999998643
No 13
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.00 E-value=18 Score=23.51 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009031 97 EIAVLEAEIMHLERYLLSLYRTA 119 (546)
Q Consensus 97 EIA~LE~EV~~lE~~llsLYr~~ 119 (546)
||..||.|---|||.+-.|-+++
T Consensus 1 eidalefendaleqkiaalkqki 23 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHH
Confidence 46678888888888887777665
No 14
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=33.71 E-value=38 Score=23.44 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLE 109 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE 109 (546)
....|||.|=..||.||.+|-
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 367899999999999999985
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.38 E-value=38 Score=23.56 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLE 109 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE 109 (546)
....+||.|=..||.||.+|-
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHH
Confidence 357899999999999999985
No 16
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=32.72 E-value=58 Score=23.55 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009031 96 KEIAVLEAEIMHLERYLLSLYRTA 119 (546)
Q Consensus 96 ~EIA~LE~EV~~lE~~llsLYr~~ 119 (546)
.|+|.||.|..-||+.+-.|--+.
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999998876543
No 17
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.96 E-value=25 Score=26.87 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 009031 90 SSAELMKEIAVLEAEIMHLERY 111 (546)
Q Consensus 90 ~~~eLi~EIA~LE~EV~~lE~~ 111 (546)
...+|++|++.|+.+|..||+.
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666654
No 18
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.34 E-value=57 Score=25.21 Aligned_cols=22 Identities=41% Similarity=0.315 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009031 91 SAELMKEIAVLEAEIMHLERYL 112 (546)
Q Consensus 91 ~~eLi~EIA~LE~EV~~lE~~l 112 (546)
..+|-.||+.|+.|+..|...|
T Consensus 39 n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 39 KSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 19
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.07 E-value=50 Score=22.98 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLER 110 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE~ 110 (546)
..+.|||.+=..||.||.+|-.
T Consensus 8 dkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 8 DAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 4688999999999999999854
No 20
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.90 E-value=1.2e+02 Score=20.40 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009031 91 SAELMKEIAVLEAEIMHLERYLLS 114 (546)
Q Consensus 91 ~~eLi~EIA~LE~EV~~lE~~lls 114 (546)
+..|-.|||.|..||.-|.-.+-.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655544433
No 21
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.58 E-value=1.2e+02 Score=22.06 Aligned_cols=12 Identities=50% Similarity=0.653 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 009031 93 ELMKEIAVLEAE 104 (546)
Q Consensus 93 eLi~EIA~LE~E 104 (546)
.|-.|+|.||-|
T Consensus 7 qlenevaslene 18 (49)
T 3he5_A 7 QLENEVASLENE 18 (49)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 344455555544
No 22
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.69 E-value=58 Score=22.68 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLER 110 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE~ 110 (546)
....|||.|--.||.||.+|-.
T Consensus 8 dKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 8 DKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4688999999999999999853
No 23
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=25.89 E-value=28 Score=23.73 Aligned_cols=12 Identities=50% Similarity=0.720 Sum_probs=9.9
Q ss_pred CCCccccccccc
Q 009031 21 PSSLSVYENGFW 32 (546)
Q Consensus 21 ~~~~~~~~~~~~ 32 (546)
+|+++++||.||
T Consensus 19 ssissseendfw 30 (35)
T 2lic_A 19 SSISSSEENDFW 30 (35)
T ss_dssp SCCSTTCSCSSC
T ss_pred cccccccccccc
Confidence 456778999999
No 24
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=25.72 E-value=52 Score=28.06 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLERYLL 113 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE~~ll 113 (546)
.-..||-.||+.||.||..||.---
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999996443
No 25
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=25.38 E-value=25 Score=22.86 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009031 94 LMKEIAVLEAEIMHLER 110 (546)
Q Consensus 94 Li~EIA~LE~EV~~lE~ 110 (546)
|=+.+.-||.||-+||-
T Consensus 6 ldanvkrlekevgkleg 22 (28)
T 4dac_A 6 LDANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhhhhh
Confidence 34444445555555543
No 26
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.89 E-value=31 Score=26.61 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009031 94 LMKEIAVLEAEIMHLER 110 (546)
Q Consensus 94 Li~EIA~LE~EV~~lE~ 110 (546)
|-.+++.||.|-..|..
T Consensus 27 Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 27
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.89 E-value=50 Score=23.07 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 009031 90 SSAELMKEIAVLEAEIMHLERYLL 113 (546)
Q Consensus 90 ~~~eLi~EIA~LE~EV~~lE~~ll 113 (546)
.....-++|.-|+.+-..||+++-
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 344455555555555555555543
No 28
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=23.74 E-value=36 Score=22.72 Aligned_cols=14 Identities=50% Similarity=0.586 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 009031 98 IAVLEAEIMHLERY 111 (546)
Q Consensus 98 IA~LE~EV~~lE~~ 111 (546)
||.||..|.-|||.
T Consensus 2 iaaleqkiaaleqk 15 (32)
T 4g1a_A 2 IAALEQKIAALEQK 15 (32)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55666666666654
No 29
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.06 E-value=81 Score=21.97 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 009031 89 KSSAELMKEIAVLEAEIMHLE 109 (546)
Q Consensus 89 ~~~~eLi~EIA~LE~EV~~lE 109 (546)
....|||.+=..||.||.+|-
T Consensus 8 dKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 8 DKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHH
Confidence 367899999999999999985
No 30
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.73 E-value=71 Score=26.65 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009031 90 SSAELMKEIAVLEAEIMHLERYLLSLYRTAF 120 (546)
Q Consensus 90 ~~~eLi~EIA~LE~EV~~lE~~llsLYr~~f 120 (546)
.+.+|-+|=+.|+.+|..|++++-.| +.+|
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~L-r~ll 73 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTL-RNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45566666666666666666665543 3444
No 31
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=20.59 E-value=59 Score=28.11 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=15.7
Q ss_pred CChhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 009031 87 APKSSAELMKEIAVLEAEI-------MHLERYLLSLYRTAFEEH 123 (546)
Q Consensus 87 ~p~~~~eLi~EIA~LE~EV-------~~lE~~llsLYr~~f~q~ 123 (546)
--+.-.|||++|--+|+|| ..||.|+-+|--++.|+.
T Consensus 44 ~~lTrdELI~lllk~e~~l~~kd~~IrELEDYID~LLvRVME~t 87 (107)
T 2gzd_C 44 RSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEET 87 (107)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445678888888887776 789999999998888866
No 32
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=20.38 E-value=1.6e+02 Score=19.75 Aligned_cols=26 Identities=42% Similarity=0.399 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009031 91 SAELMKEIAVLEAEIMHLERYLLSLY 116 (546)
Q Consensus 91 ~~eLi~EIA~LE~EV~~lE~~llsLY 116 (546)
...|-+|+|.-|.|--.|||.|-.|-
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45677777777777777777776553
Done!