Query 009031
Match_columns 546
No_of_seqs 235 out of 519
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 17:15:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009031.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009031hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v74b_ a.24.20.1 (B:) Colicin 12.8 45 0.0033 25.9 2.1 18 221-238 37-54 (87)
2 d1n0ea_ b.129.1.2 (A:) Hypothe 12.6 1.4E+02 0.01 24.4 5.6 47 442-488 41-102 (141)
3 d1omca_ g.3.6.1 (A:) Conotoxin 12.2 40 0.0029 20.2 1.2 13 8-20 1-13 (27)
4 d1khba1 c.91.1.1 (A:260-622) C 11.7 14 0.00099 36.2 -1.7 60 462-530 232-301 (363)
5 d2bz1a1 c.144.1.1 (A:1-174) GT 11.1 77 0.0056 27.0 3.4 46 425-470 25-84 (174)
6 d2azeb1 e.63.1.2 (B:201-301) T 10.7 1.8E+02 0.013 22.6 5.4 31 90-120 2-32 (101)
7 d1wu9a1 a.245.1.1 (A:191-249) 9.8 1.2E+02 0.0087 21.7 3.5 22 90-111 2-23 (59)
8 d1aoaa1 a.40.1.1 (A:121-251) F 9.1 62 0.0045 26.1 1.9 13 336-348 2-16 (131)
9 d1otfa_ d.80.1.1 (A:) 4-oxaloc 8.0 2.1E+02 0.015 19.4 4.2 46 334-383 10-58 (59)
10 d1ydxa2 d.287.1.2 (A:194-374) 7.4 2E+02 0.014 22.8 4.5 25 96-120 153-177 (181)
No 1
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli [TaxId: 562]}
Probab=12.84 E-value=45 Score=25.92 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=15.7
Q ss_pred cccchHHHHHHHHHHHhH
Q 009031 221 SDRLSEDIVRCISSIYCK 238 (546)
Q Consensus 221 PnklSEemvkC~~~Iy~~ 238 (546)
-++++.++-.|++.|||-
T Consensus 37 ~~~~~~~l~eClssiF~~ 54 (87)
T d1v74b_ 37 VKDLSPNILNCGEELFMA 54 (87)
T ss_dssp CSSCCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHH
Confidence 357889999999999996
No 2
>d1n0ea_ b.129.1.2 (A:) Hypothetical protein MraZ {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=12.64 E-value=1.4e+02 Score=24.37 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=31.2
Q ss_pred CCCcceeccccHHHHHH-------------HHHHHHhhcc--cccccCCeEEccHHHHHHhh
Q 009031 442 DPGVRVYTAKNVFRDLK-------------LAKEEFIQAS--VYIHKESKIFLPKIIYYFAK 488 (546)
Q Consensus 442 sP~lRvYta~~v~~qLe-------------~A~~efL~a~--V~V~~~~kV~LPKIf~wY~~ 488 (546)
.+.|-+|+.+..++.-+ ..++.++... +.+|+.++|.||+-+.-|++
T Consensus 41 ~~cL~~y~~~~~~~~~~~i~~l~~~~~~~r~~~r~l~~~a~~~~~D~~GRi~lp~~Lr~~a~ 102 (141)
T d1n0ea_ 41 ENCLEVRKPQDFQKYFEQFNSFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAK 102 (141)
T ss_dssp TSCCEEBCHHHHHHHHHHHTTSCSSSHHHHHHHHHHHTTCCEEECCTTSEEECCHHHHHHTT
T ss_pred CCchhhcCHHHhHHHHHhhhccCcchHHHHHHHHHHHhcceEeeecccceEeeCHHHHHHcC
Confidence 35688999887653322 2233344333 56778889999999988864
No 3
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=12.21 E-value=40 Score=20.22 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCC
Q 009031 8 CRSSSPSCPSPPQ 20 (546)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (546)
|.|+-+||++..+
T Consensus 1 ckspgsscsptsy 13 (27)
T d1omca_ 1 CKSPGSSCSPTSY 13 (27)
T ss_dssp CBCTTCBCCTTTT
T ss_pred CCCCCCcCCCccc
Confidence 6788888877655
No 4
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.67 E-value=14 Score=36.16 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=37.1
Q ss_pred HHHhhcccccccCCeEEccHHHH--HHhhcccc--------ChHHHHHHHHhhccHHHHHHHHHHHccCCCcceEEecC
Q 009031 462 EEFIQASVYIHKESKIFLPKIIY--YFAKDMSL--------DIQGLLELITGCVAEAQQKAMRKCIKGKHDKFINWLPQ 530 (546)
Q Consensus 462 ~efL~a~V~V~~~~kV~LPKIf~--wY~~DFg~--------~~~~Ll~wI~~~Lp~~~~~~i~~~l~~~~~~~Ve~~pY 530 (546)
-+|+++-..+.....-.+||||+ ||++|=.. +...+|+||.+.+..... .....|.|+|+
T Consensus 232 gdY~~hWL~~g~~~~~k~PkIF~VNWFrKd~~GkFLWPGfGeN~RVLkWI~~Rv~G~~~---------A~eTPIG~vP~ 301 (363)
T d1khba1 232 GKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKAS---------TKLTPIGYIPK 301 (363)
T ss_dssp HHHHHHHHHGGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHTC--C---------EEEETTEEEEC
T ss_pred HHHHHHHHhhhcccccCCCcEEEEEeeeecCCCCccCCCcchhhHHHHHHHHHhcCCcc---------ccccCceeccC
Confidence 36666665553221245999998 99988321 345799999987664311 12345888887
No 5
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]}
Probab=11.09 E-value=77 Score=26.99 Aligned_cols=46 Identities=24% Similarity=0.122 Sum_probs=30.4
Q ss_pred CCCCceeeeeeccCCCCC--CC-cceeccccH-----------HHHHHHHHHHHhhcccc
Q 009031 425 EYPEPLVHFALCSGAYSD--PG-VRVYTAKNV-----------FRDLKLAKEEFIQASVY 470 (546)
Q Consensus 425 ~~~DPrIhFAL~cGs~Ss--P~-lRvYta~~v-----------~~qLe~A~~efL~a~V~ 470 (546)
+..|..+||||..|.++. |+ |||-...-+ ..+|+.|.+..-....|
T Consensus 25 ~~~~~~~HlALvkG~i~~~~~vlVRVHs~~~~~Dv~~~~~~~~~~~L~~al~~I~~~g~G 84 (174)
T d2bz1a1 25 ELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRG 84 (174)
T ss_dssp ETTTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCSHHHHHHHHHHHHHHHTSE
T ss_pred eCCCCeEEEEEEEcCcccccceeEEeeecccccceecccccccchhHHHHHHHHHHcCCc
Confidence 356778999999998743 44 587544433 34777777766555444
No 6
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.72 E-value=1.8e+02 Score=22.59 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009031 90 SSAELMKEIAVLEAEIMHLERYLLSLYRTAF 120 (546)
Q Consensus 90 ~~~eLi~EIA~LE~EV~~lE~~llsLYr~~f 120 (546)
+...|-+||+-|+.+-..|++++-.+-.++.
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~ 32 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLR 32 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999998887776
No 7
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.82 E-value=1.2e+02 Score=21.71 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 009031 90 SSAELMKEIAVLEAEIMHLERY 111 (546)
Q Consensus 90 ~~~eLi~EIA~LE~EV~~lE~~ 111 (546)
+..+|-.||+.|...|..||+.
T Consensus 2 e~~~L~~ei~elk~~v~~lEkE 23 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKE 23 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999876
No 8
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.09 E-value=62 Score=26.14 Aligned_cols=13 Identities=62% Similarity=1.009 Sum_probs=9.9
Q ss_pred chhhHHHH--HHHHH
Q 009031 336 KREEKLAF--WINIH 348 (546)
Q Consensus 336 s~eEKLAF--WINiY 348 (546)
+.+||.|| |||-|
T Consensus 2 ~e~ek~~f~~WiN~~ 16 (131)
T d1aoaa1 2 SEEEKYAFVNWINKA 16 (131)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 56888877 88864
No 9
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=8.00 E-value=2.1e+02 Score=19.44 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=31.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhCCC-CCccccc--cceeEEEeCCEeec
Q 009031 334 KMKREEKLAFWINIHNALVMHAYLAYGTR-NSVKSTS--IMKAAYNVGGQYVD 383 (546)
Q Consensus 334 ~Ls~eEKLAFWINiYNaLvmHa~L~~GiP-~s~k~~~--~~ka~Y~VGG~~~S 383 (546)
+.+.++|.++-=++-.+++=+ .|+| ..+.-+. .....|-+||...|
T Consensus 10 Grs~eqK~~l~~~it~~~~~~----~g~~~~~v~V~i~E~~~~nw~~gG~~~s 58 (59)
T d1otfa_ 10 GRTDEQKETLIRQVSEAMANS----LDAPLERVRVLITEMPKNHFGIGGEPAS 58 (59)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH----HTCCGGGCEEEEEEECGGGEEETTEETT
T ss_pred CCCHHHHHHHHHHHHHHHHHH----hCcCcccEEEEEEEeChhhEEECCEECC
Confidence 458899999887777766532 4787 5554332 67778888998654
No 10
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=7.38 E-value=2e+02 Score=22.80 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009031 96 KEIAVLEAEIMHLERYLLSLYRTAF 120 (546)
Q Consensus 96 ~EIA~LE~EV~~lE~~llsLYr~~f 120 (546)
+.|+.++.++..||+.--+|++++|
T Consensus 153 ~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 153 QKLDQYKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466667777777777777777777
Done!