BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009033
(546 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 24 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
DT++GN ++ +SGGER+R++IA +L P+++ DE TS LDS + + + L R
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RK 203
Query: 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
RT+I H+ S+ + + LL+ GK V G
Sbjct: 204 NRTLIIIAHRLST--ISSAESIILLNKGKIVEKG 235
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGGE++RV++A ++ P++L LDEP S LD + L L + + + I
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 95 SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
+E + DR+ ++ GK + G+ FE
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
L++ +T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + +
Sbjct: 127 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 185
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
+ + GRTVI H+ S+ + DR+ ++ GK V G+
Sbjct: 186 KICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 222
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
L++ +T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + +
Sbjct: 127 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 185
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
+ + GRTVI H+ S+ + DR+ ++ GK V G+
Sbjct: 186 KICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 222
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
L++ +T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + +
Sbjct: 125 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
+ + GRTVI H+ S+ + DR+ ++ GK V G+
Sbjct: 184 KICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 220
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
L++ +T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + +
Sbjct: 131 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
+ + GRTVI H+ S+ + DR+ ++ GK V G+
Sbjct: 190 KICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 226
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 16 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 75
++GL+D A + + +SGG+ +RV+IA + M P+++ DEPTS LD V
Sbjct: 146 KVGLKDKA-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 200
Query: 76 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
++ L+ +G T++ H+ E+ DR+ + GG + G+ F+
Sbjct: 201 VMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 16 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 75
++GL+D A + + +SGG+ +RV+IA + M P+++ DEPTS LD V
Sbjct: 125 KVGLKDKA-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 179
Query: 76 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
++ L+ +G T++ H+ E+ DR+ + GG + G+ F+
Sbjct: 180 VMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 24 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
+TV+G + +SGG+++R++IA +L P++L LDE TS LD+ + V + L L D
Sbjct: 474 NTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MD 531
Query: 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
GRTV+ H+ S+ + + + +L GK +G+
Sbjct: 532 GRTVLVIAHRLST--IKNANMVAVLDQGKITEYGK 564
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 10 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 69
VE+ ++E+ + D ++ + +SGG+++RV++A ++ +P++L DEP S LD+
Sbjct: 110 VEKRVVEIARKLLIDNLLDRKPTQ-LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL 168
Query: 70 AFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128
+ ++ L ++ G T + H +E + R+ + + GK V +G ++ +
Sbjct: 169 RMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMASRIAVFNQGKLVQYGTPDEVYD-SPK 226
Query: 129 AGFPCPALRNPSDHFLRCINSDFDKVKATLK 159
F + NP +FLR + + + LK
Sbjct: 227 NMFVASFIGNPPTNFLRDFSVSVENKQTILK 257
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 12 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 71
R+ +E + D +T +G ++ ISGG+R+R++IA L P++L LDE T+ LDS +
Sbjct: 119 RSFVE-NMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 72 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
V + L L + GRT + H+ S+ V D++Y + G+ G+
Sbjct: 177 MVQKALDSLMK-GRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGK 220
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
SE +VER GL + + + S G R++ IA +++ PRL LDEPTS
Sbjct: 121 SEIEEMVERATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 64 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
GLD A V + L+ S++G T++ S H EV L DR+ L+ G V G
Sbjct: 176 GLDVLNAREVRKILKQASQEGLTILVSSHN-MLEVEFLCDRIALIHNGTIVETG 228
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 24 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
+TV+G + +SGG+++R++IA +L P++L LDE TS LD+ + V + L L D
Sbjct: 505 NTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MD 562
Query: 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
GRTV+ H S+ + + + +L GK +G+
Sbjct: 563 GRTVLVIAHHLST--IKNANMVAVLDQGKITEYGK 595
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 17 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
M L DT +G ++ +SGG+++R+SIA L P +L LDE TS LD + + +
Sbjct: 461 MNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 77 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 130
L LS+D T+I + H+ S+ D++ ++ G V ET E A+ G
Sbjct: 520 LDVLSKDRTTLIVA-HRLSTITHA--DKIVVIENGHIV---ETGTHRELIAKQG 567
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
L++ +T++G G+SGG+R+R++IA ++ P++L D+ TS LD + + + +
Sbjct: 131 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMH 189
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
+ + GRTVI H+ S+ + DR+ ++ GK V G+
Sbjct: 190 KICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 226
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASI 91
+ +SGG+R+RV+I ++ P + LDEP S LD+A + + R R GRT+I
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ---AGFPCPALRNPSDHFL--RC 146
H E L D++ +L G+ G+ + + A AGF + +P +FL +
Sbjct: 192 HD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF----IGSPKMNFLPVKV 246
Query: 147 INSDFDKVKATL 158
+ D+V+ L
Sbjct: 247 TATAIDQVQVEL 258
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASI 91
+ +SGG+R+RV+I ++ P + LDEP S LD+A + + R R GRT+I
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ---AGFPCPALRNPSDHFL--RC 146
H E L D++ +L G+ G+ + + A AGF + +P +FL +
Sbjct: 192 HD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF----IGSPKMNFLPVKV 246
Query: 147 INSDFDKVKATL 158
+ D+V+ L
Sbjct: 247 TATAIDQVQVEL 258
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS----AAAFFVTQTLRCLSRDG 84
N R +SGG+++RV++A ++ P LL LDEP S LD+ +A V + SR G
Sbjct: 135 NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE---VQSRLG 191
Query: 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
T++ H P +++F + DR+ +L GK V G+ ++
Sbjct: 192 VTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGGE+RRV+IA I+ P +L LDEP GLD + + + G+TVI H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 95 SSEVFELFDRLYLLSGGKTVYFG 117
+ V DR+ +L GK V+ G
Sbjct: 201 ET-VINHVDRVVVLEKGKKVFDG 222
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGGE+RRV+IA I+ P +L LDEP GLD + + + G+TVI H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 95 SSEVFELFDRLYLLSGGKTVYFG 117
+ V DR+ +L GK V+ G
Sbjct: 199 ET-VINHVDRVVVLEKGKKVFDG 220
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
+P E R V+ + G++ D +S G+++RV+IA ++M P++L LDE
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 61 PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELF-DRLYLLSGGKTVYFGE 118
PT+GLD + + L + ++ G T+I + H ++ L+ D ++++ G+ + G
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGN 227
Query: 119 TSAAF 123
F
Sbjct: 228 PKEVF 232
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 62
WS L+E+ ++ + + N + +SGG ++RV IAL +L+ P +L LDEPT
Sbjct: 124 WSHSE-LIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPT 182
Query: 63 SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122
S LD + Q L+ L + + + + + EL D++ ++ GG V + T
Sbjct: 183 SALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNST--- 239
Query: 123 FEFFAQAGFPCPALRNPSDHFLR-------CINSDFDKVK 155
F+ F +NP + R +N+D KVK
Sbjct: 240 FQIF----------KNPLHPYTRGLINSIMAVNADMSKVK 269
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASI 91
+ +SGG+R+RV+I ++ P + LD+P S LD+A + + R R GRT+I
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ---AGFPCPALRNPSDHFL--RC 146
H E L D++ +L G+ G+ + + A AGF + +P +FL +
Sbjct: 192 HD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF----IGSPKMNFLPVKV 246
Query: 147 INSDFDKVKATL 158
+ D+V+ L
Sbjct: 247 TATAIDQVQVEL 258
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGGER+RV++A ++++PRLL LDEP S +D + + LR + R+ I +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 95 SSEVFELFDRLYLLSGGKTVYFGETSAAF 123
E L D + ++ G+ V G+ F
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELF 215
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
L D +T +G+ + +SGG+++R++IA ++ +P +L LDE TS LD+ + V + L
Sbjct: 1157 LPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 130
+R+GRT I H+ S+ + D + ++ GK G + AQ G
Sbjct: 1216 K-AREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQ---QLLAQKG 1261
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 24 DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
DT++G RG +SGG+++R++IA ++ P++L LDE TS LD+ + V L +
Sbjct: 517 DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-A 572
Query: 82 RDGRTVIASIHQPSS 96
R+GRT I H+ S+
Sbjct: 573 REGRTTIVIAHRLST 587
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
L D +T +G+ + +SGG+++R++IA ++ +P +L LDE TS LD+ + V + L
Sbjct: 1157 LPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 130
+R+GRT I H+ S+ + D + ++ GK G + AQ G
Sbjct: 1216 K-AREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQ---QLLAQKG 1261
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 24 DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
DT++G RG +SGG+++R++IA ++ P++L LDE TS LD+ + V L +
Sbjct: 517 DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-A 572
Query: 82 RDGRTVIASIHQPSS 96
R+GRT I H+ S+
Sbjct: 573 REGRTTIVIAHRLST 587
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 30 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 88
W L SGG+++RV+IA ++ P +L LDEP S LD+ V L+ L ++ G T +
Sbjct: 132 WQL---SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188
Query: 89 ASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCIN 148
H +E + DR+ ++ G+ + G + + + F L NP +F+
Sbjct: 189 YVTHD-QAEALAMADRIAVIREGEILQVGTPDEVY-YKPKYKFVGGFLGNPPMNFVEAKV 246
Query: 149 SD 150
D
Sbjct: 247 ED 248
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
+SGG+++RVSIA + M P +L DEPTS LD V + ++ L+ +G+T++ H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
L++ +T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + +
Sbjct: 125 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
+ + GRTVI + S+ + DR+ ++ GK V G+
Sbjct: 184 KICK-GRTVIIIAARLST--VKNADRIIVMEKGKIVEQGK 220
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
L++ +T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + +
Sbjct: 131 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
+ + GRTVI + S+ + DR+ ++ GK V G+
Sbjct: 190 KICK-GRTVIIIAARLST--VKNADRIIVMEKGKIVEQGK 226
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS----AAAFFVTQTLRCLSRDG 84
N R +SG +++RV++A ++ P LL LDEP S LD+ +A V + SR G
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE---VQSRLG 191
Query: 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
T++ H P +++F + DR+ +L GK V G+ ++
Sbjct: 192 VTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
P E + E + E+GL D + +SGGE++RV+IA + P LLF DEP
Sbjct: 113 PKKEAKERGEYLLSELGLGDKL-----SRKPYELSGGEQQRVAIARALANEPILLFADEP 167
Query: 62 TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
T LDSA V ++ G +++ H+ E+ EL R + GK V
Sbjct: 168 TGNLDSANTKRVMDIFLKINEGGTSIVMVTHE--RELAELTHRTLEMKDGKVV 218
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 24 DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
+T++G+ RG +SGG+++R++IA ++ P++L LDE TS LD+ + V Q L +
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601
Query: 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 131
+ GRT I H+ S+ D + G+ V G+ A AQ G
Sbjct: 602 K-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRA---LMAQQGL 645
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
+SGG+++R++IA ++ P++L LDE TS LD+ + V + L +R+GRT I H+
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD-RAREGRTCIVIAHR 1275
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 10 VERTIIEMGLQDCAD----TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 65
V R I+ +++ A+ T + N R +SGG+R+RV++ I+ +P++ +DEP S L
Sbjct: 111 VPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 66 DSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
D+ + L+ L R G T I H E + DR+ +++ G G ++
Sbjct: 171 DAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
Query: 125 FFAQ---AGFPCPALRNPSDHFLRCINSD 150
A AGF + +P +FL I ++
Sbjct: 230 KPANTFVAGF----IGSPPMNFLDAIVTE 254
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGG+R+RV++A I++ P +L +DEP S LD+ + ++ L + + +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
Query: 95 SSEVFELFDRLYLLSGGKTVYFGETSAAF 123
E + DR+ +++ G+ + G + +
Sbjct: 202 QVEAMTMGDRIAVMNRGQLLQIGSPTEVY 230
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGG+R+RV++A I++ P +L +DEP S LD+ + ++ L + + +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 202
Query: 95 SSEVFELFDRLYLLSGGKTVYFGETSAAF 123
E + DR+ +++ G+ + G + +
Sbjct: 203 QVEAMTMGDRIAVMNRGQLLQIGSPTEVY 231
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTV 87
N +SGG+++RV+IA + P ++ DEPT LDS + Q L+ L+ DG+TV
Sbjct: 140 NHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTV 199
Query: 88 IASIH 92
+ H
Sbjct: 200 VVVTH 204
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 25 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83
T + +SGG+R+ + IA I +L+ LDEPTS LD A V L L++
Sbjct: 119 THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
TV+ + HQP ++V + ++ LL+ + FGET
Sbjct: 179 NMTVVFTTHQP-NQVVAIANKTLLLN-KQNFKFGET 212
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 24 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
DTVIG + +SGG+R+RV+IA +L +L LDE TS LD+ + + L L ++
Sbjct: 471 DTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 130
+TV+ H+ S+ E D + ++ G+ + G + + AQ G
Sbjct: 530 -KTVLVIAHRLST--IEQADEILVVDEGEIIERGRHA---DLLAQDG 570
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
+ + DT+IG + +SGG+R+R++IA +L +L LDE TS LD+ + + L
Sbjct: 466 MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 130
L ++ RT + H+ S+ E D + ++ G V G S E AQ G
Sbjct: 525 ELQKN-RTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHS---ELLAQHG 570
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 17 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR-------PRLLFLDEPTSGLDSAA 69
M DC + R +SGGE++RV +A +L + PR LFLDEPTS LD
Sbjct: 126 MAQTDC--LALAQRDYRVLSGGEQQRVQLA-RVLAQLWQPQPTPRWLFLDEPTSALDLYH 182
Query: 70 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
+ LR L+R + + + DR+ LL+ GK V G
Sbjct: 183 QQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACG 230
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTV 87
N +SGG+++RV+IA + P ++ D+PT LDS + Q L+ L+ DG+TV
Sbjct: 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTV 199
Query: 88 IASIH 92
+ H
Sbjct: 200 VVVTH 204
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
+ L +SGGE +RV+IA +L + F DEP+S LD V + +R L+ +G+ V+
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 89 ASIHQPSSEVFELFDRLYLLSGGKTVY 115
H + + L D ++++ G VY
Sbjct: 283 VVEHDLAVLDY-LSDVIHVVYGEPGVY 308
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
+ ++ +SGGE +RV+IA +L + LDEP++ LD V++ +R L
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 89 ASIHQPSSEVFELFDRLYLLSG 110
+ + + DRL + G
Sbjct: 526 LVVEHDVLMIDYVSDRLIVFEG 547
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
+ L +SGGE +RV+IA +L + F DEP+S LD V + +R L+ +G+ V+
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Query: 89 ASIHQPSSEVFELFDRLYLLSGGKTVY 115
H + + L D ++++ G VY
Sbjct: 269 VVEHDLAVLDY-LSDVIHVVYGEPGVY 294
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
+ ++ +SGGE +RV+IA +L + LDEP++ LD V++ +R L
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
Query: 89 ASIHQPSSEVFELFDRLYLLSG 110
+ + + DRL + G
Sbjct: 512 LVVEHDVLMIDYVSDRLIVFEG 533
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTV 87
N R +SGG+R+RV++ I+ RP++ DEP S LD+ L+ L R G T
Sbjct: 137 NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTT 196
Query: 88 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
I H E DR+ + + G+ G +
Sbjct: 197 IYVTHD-QVEAXTXGDRIAVXNKGELQQVGTPDEVY 231
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 25 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84
T +G L+ +SGGE++RV+IA IL P ++ LDE TS LD++ + +L + +
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN- 239
Query: 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121
RT I H+ S+ V D++ ++ G V G A
Sbjct: 240 RTTIVVAHRLSTVVN--ADQILVIKDGCIVERGRHEA 274
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-----GRTVIA 89
+SGG+++RV++A + RP++L DEP + +D+ + + LR R G T +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ----IRRELRTFVRQVHDEMGVTSVF 201
Query: 90 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
H E E+ DR+ +L G FG +E
Sbjct: 202 VTHD-QEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 28 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRT 86
N +SGG+++RV+IA + P ++ D+PT LDS + Q L+ L+ DG+T
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKT 198
Query: 87 VIASIH 92
V+ H
Sbjct: 199 VVVVTH 204
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
+ + DTVIG + +SGG+R+R++IA +L +L LDE TS LD+ + + L
Sbjct: 466 MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
L ++ RT + H+ S+ E D + ++ G V G + E
Sbjct: 525 ELQKN-RTSLVIAHRLST--IEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
R SGG+++R+SIA ++ +P++L LD+ TS +D + L+ ++ T I +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQK 537
Query: 93 QPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
P++ L D++ +L GK FG E
Sbjct: 538 IPTA---LLADKILVLHEGKVAGFGTHKELLE 566
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
SE R +++ + +GL A N +SGG+++R++IA + R L LDEP S
Sbjct: 115 SEMRKRIKKVLELVGLSGLAAADPLN-----LSGGQKQRLAIASMLARDTRFLALDEPVS 169
Query: 64 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
LD + + Q L L +G+ +I H+ E + D + +S G + G ++
Sbjct: 170 MLDPPSQREIFQVLESLKNEGKGIILVTHE--LEYLDDMDFILHISNGTIDFCG----SW 223
Query: 124 EFFAQAGF 131
E F + F
Sbjct: 224 EEFVEREF 231
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 90
++ +SGGE +RV+IA +L F DEP+S LD + +R LS +G++V+
Sbjct: 155 EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 91 IH 92
H
Sbjct: 215 EH 216
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 23/153 (15%)
Query: 17 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
+G+ D D + +SGGE +RV+IA +L + LDEP++ LD V++
Sbjct: 389 LGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 443
Query: 77 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPAL 136
+R L + + + DRL + G Y P
Sbjct: 444 IRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEGEPGKY------------GRALPPXGX 491
Query: 137 RNPSDHFLRCI------NSDFDKVKATLKGSMK 163
R + FL I + D + +A +GS+K
Sbjct: 492 REGXNRFLASIGITFRRDPDTGRPRANKEGSVK 524
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 26 VIGNWHL----RGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQ 75
+I +W + RG+SGGER +SI+L + + R F+DE S LD+ +
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS 326
Query: 76 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
L+ L R + ++ H E E FDR ++GG V
Sbjct: 327 VLKELERLNKVIVFITH--DREFSEAFDRKLRITGGVVV 363
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 24 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSR 82
DT +G + +SGG+R+ V++A ++ +PRLL LD+ TS LD+ V + L
Sbjct: 147 DTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEW 205
Query: 83 DGRTVIASIHQPS 95
RTV+ HQ S
Sbjct: 206 ASRTVLLITHQLS 218
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGGE++ ++I + RP+LL DEP+ GL V + ++ ++++G T++ + Q
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL-VEQN 198
Query: 95 SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
+ ++ Y+L G+ V G+ S +
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 26 VIGNWHL----RGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQ 75
+I +W + RG+SGGER +SI+L + R F+DE S LD+ +
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS 326
Query: 76 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
L+ L R + ++ H E E FDR ++GG V
Sbjct: 327 VLKELERLNKVIVFITH--DREFSEAFDRKLRITGGVVV 363
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
R +E +GL ++ + +RG+SGG++ ++ +A RP L+ LDEPT+ LD
Sbjct: 877 RKEIEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Query: 67 SAAAFFVTQTLR 78
+ +++ L+
Sbjct: 934 RDSLGALSKALK 945
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 67
+ +SGG + ++++A +L +L LDEPT+ LD+
Sbjct: 546 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
R +E +GL ++ + +RG+SGG++ ++ +A RP L+ LDEPT+ LD
Sbjct: 871 RKEIEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
Query: 67 SAAAFFVTQTLR 78
+ +++ L+
Sbjct: 928 RDSLGALSKALK 939
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 67
+ +SGG + ++++A +L +L LDEPT+ LD+
Sbjct: 540 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 26 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
++ + +RG+SGG++ ++ +A RP L+ LDEPT+ LD + +++ L+
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 67
+ +SGG + ++++A +L +L LDEPT+ LD+
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 24 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 77
DT +G + +SGG+R+ V++A ++ +PRLL LD TS LD+ V + L
Sbjct: 147 DTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQ 93
+SGG+R+ V++A ++ +P +L LD+ TS LD+ + V Q L R R+V+
Sbjct: 155 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 214
Query: 94 PSSEVFELFDRLYLLSGG 111
S + E D + L GG
Sbjct: 215 LS--LVEQADHILFLEGG 230
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
G SGGE++R I ++ P L LDE SGLD A V + L R+ I H
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 204
Query: 94 PSSEVFELFDRLYLLSGGKTVYFGE 118
+ D +++L G+ V G+
Sbjct: 205 QRILDYIKPDYVHVLYQGRIVKSGD 229
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
G SGGE++R I ++ P L LDE SGLD A V + L R+ I H
Sbjct: 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223
Query: 94 PSSEVFELFDRLYLLSGGKTVYFGE 118
+ D +++L G+ V G+
Sbjct: 224 QRILDYIKPDYVHVLYQGRIVKSGD 248
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
+S GE++RV IA + +P++L LDEP +GLD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%)
Query: 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
L D ++ + + G SGGE++R I +++ P LDE SGLD A V + +
Sbjct: 128 LLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN 187
Query: 79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 129
+ + H + D+++++ G+ V G A E A+
Sbjct: 188 AMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKG 238
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 35 ISGGERRRVSIALEILMRPR---LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 91
+SGGE +R+ +A E+ R + LDEPT+GL A + + L L G TVIA
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 92 HQ 93
H+
Sbjct: 791 HK 792
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGG+ + V I ++ P+++ +DEP +G+ A + + L G T + H+
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 95 SSEVFELFDRLYLLSGGKTVYFG 117
V D LY++ G+ + G
Sbjct: 214 DI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGG+ + V I ++ P+++ +DEP +G+ A + + L G T + H+
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 95 SSEVFELFDRLYLLSGGKTVYFG 117
V D LY++ G+ + G
Sbjct: 214 DI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 90
++ +SGGE +++ IA + L LD+P+S LD + V + ++ ++R+ + V
Sbjct: 382 NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441
Query: 91 IHQPSSEVFELFDRLYLLSG 110
I S + DR+ + G
Sbjct: 442 IDHDLSIHDYIADRIIVFKG 461
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 14/173 (8%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGG +R+ +A +L + D+P+S LD + + +R L ++ + VI H
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN-KYVIVVDHDL 197
Query: 95 SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDF--D 152
+ L D ++++ G +VY G S ++ A+ G + N +L N D
Sbjct: 198 IVLDY-LTDLIHIIYGESSVY-GRVSKSYA--ARVG-----INNFLKGYLPAENMKIRPD 248
Query: 153 KVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGI 205
++K LK L + S D K+ + IK L DF + A + ++ GI
Sbjct: 249 EIKFMLKEVSDL--DLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGI 299
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+SGG+ + V I ++ P+++ +D+P +G+ A + + L G T + H+
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 95 SSEVFELFDRLYLLSGGKTVYFG 117
V D LY++ G+ + G
Sbjct: 214 DI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
RT ER IE L+ + + + +SGG+++R ++A + P L+ LDEP S LD
Sbjct: 111 RTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
Query: 67 SAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 125
+ + + L +G++ + H E + DR+ ++ G+ + +T++ E
Sbjct: 171 EQLRRQIREDMIAALRANGKSAVFVSHD-REEALQYADRIAVMKQGRIL---QTASPHEL 226
Query: 126 FAQ 128
+ Q
Sbjct: 227 YRQ 229
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 35 ISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
+SGGE +R+ +A +I R L LDEP+ GL + TL+ + G T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 93 QPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 140
+ D L + G ++ GE A AG P + +P+
Sbjct: 565 --DEDTMLAADYLIDIGPGAGIHGGEVVA-------AGTPEEVMNDPN 603
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 35 ISGGERRRVSIALEILMRPR---LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 91
+SGGE +RV +A E+ R L LDEPT+GL + L L +G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 92 HQ 93
H
Sbjct: 906 HN 907
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 35 ISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
+SGGE +R+ +A +I R L LDEP+ GL + TL+ + G T+I H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 93 QPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 140
+ D L + G ++ GE A AG P + +P+
Sbjct: 263 --DEDTMLAADYLIDIGPGAGIHGGEVVA-------AGTPEEVMNDPN 301
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 35 ISGGERRRVSIALEILMRPR---LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 91
+SGGE +RV +A E+ R L LDEPT+GL + L L +G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 92 HQ 93
H
Sbjct: 604 HN 605
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 38 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 77
G+R+ V++A ++ +PRLL LD TS LD+ V + L
Sbjct: 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 24 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
D +I + ++ +SGGE +RV+I L + + + +DEP++ LDS ++ +R
Sbjct: 458 DDII-DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 91
+ +SGGE +R +I + + + DEP+S LD Q +R L + VI
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 92 HQPSSEVFELFDRLYLLSGGKTVY 115
H S + L D + ++ G +VY
Sbjct: 279 HDLSVLDY-LSDFVCIIYGVPSVY 301
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
+S G+R+ ++I L P++L LDE TS +D+ + + L +G+T I H+
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRL 550
Query: 95 SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 131
++ + D + +L G+ V G+ E + GF
Sbjct: 551 NT--IKNADLIIVLRDGEIVEMGKHD---ELIQKRGF 582
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 26 VIGNWHL----RGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQ 75
+I +W + RG+SGGER +SI+L + + R F+DE S L + +
Sbjct: 284 IIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLCTENKEKIAS 343
Query: 76 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
L+ L R + ++ E E FDR ++GG V
Sbjct: 344 VLKELERLNKVIV--FITCDREFSEAFDRKLRITGGVVV 380
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 35 ISGGERRRVSIALEILMRPR---LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 91
+SGGE +RV +A E+ R L LDEPT+GL + L L +G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 92 HQ 93
H
Sbjct: 906 HN 907
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 35 ISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
+SGGE +R+ +A +I R L LDEP+ GL + TL+ G T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 93 QPSSEVFELFDRLYLLSGGKTVYFGETSAA 122
+ + D L + G ++ GE AA
Sbjct: 565 DEDTXL--AADYLIDIGPGAGIHGGEVVAA 592
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 35 ISGGERRRVSIALEILMRPR---LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 91
+SGGE +R+ +A E+ R L LDEPT GL + + L L G TVI
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 92 HQ 93
H
Sbjct: 866 HN 867
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 35 ISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
+SGGE +R+ +A +I + + LDEPT GL + +TL+ L G TVI H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 93 Q 93
Sbjct: 525 D 525
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 65
K +++ I + QD +TV+G + +SGG+R R+S+A + L LD P L
Sbjct: 135 KACQLQQDITKFAEQD--NTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYL 191
Query: 66 D--SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
D + F + + ++ R ++ S E D++ +L G + ++G
Sbjct: 192 DVFTEEQVFESCVCKLMANKTRILVTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 65
K +++ I + QD +TV+G + +SGG+R R+S+A + L LD P L
Sbjct: 135 KACQLQQDITKFAEQD--NTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYL 191
Query: 66 D--SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
D + F + + ++ R ++ S E D++ +L G + ++G
Sbjct: 192 DVFTEEQVFESCVCKLMANKTRILVTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 65
K +++ I + QD +TV+G + +SGG+R R+S+A + L LD P L
Sbjct: 135 KACQLQQDITKFAEQD--NTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYL 191
Query: 66 D--SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
D + F + + ++ R ++ S E D++ +L G + ++G
Sbjct: 192 DVFTEEQVFESCVCKLMANKTRILVTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 65
K +++ I + QD +TV+G + +SGG+R R+S+A + L LD P L
Sbjct: 134 KACQLQQDITKFAEQD--NTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYL 190
Query: 66 D--SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
D + F + + ++ R ++ S E D++ +L G + ++G
Sbjct: 191 DVFTEEQVFESCVCKLMANKTRILVTS----KMEHLRKADKILILHQGSSYFYG 240
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 65
K +++ I + QD +TV+G + +SGG+R R+S+A + L LD P L
Sbjct: 135 KACQLQQDITKFAEQD--NTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYL 191
Query: 66 D--SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
D + F + + ++ R ++ S E D++ +L G + ++G
Sbjct: 192 DVFTEEQVFESCVCKLMANKTRILVTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGRTVIASIH 92
+SGG+R R+S+A + L LD P LD + F + + ++ R ++ S
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS-- 200
Query: 93 QPSSEVFELFDRLYLLSGGKTVYFG 117
E + D++ +L G + ++G
Sbjct: 201 --KMEHLKKADKILILHEGSSYFYG 223
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGRTVIASIH 92
+SGG+R R+S+A + L LD P LD + F + + ++ R ++ S
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS-- 188
Query: 93 QPSSEVFELFDRLYLLSGGKTVYFG 117
E + D++ +L G + ++G
Sbjct: 189 --KMEHLKKADKILILHEGSSYFYG 211
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGRTVIASIH 92
+SGG+R R+S+A + L LD P LD + F + + ++ R ++ S
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS-- 187
Query: 93 QPSSEVFELFDRLYLLSGGKTVYFG 117
E + D++ +L G + ++G
Sbjct: 188 --KMEHLKKADKILILHEGSSYFYG 210
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGRTVIASIH 92
+SGG+R R+S+A + L LD P LD + F + + ++ R ++ S
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS-- 217
Query: 93 QPSSEVFELFDRLYLLSGGKTVYFG 117
E + D++ +L G + ++G
Sbjct: 218 --KMEHLKKADKILILHEGSSYFYG 240
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGRTVIASIH 92
+SGG+R R+S+A + L LD P LD + F + + ++ R ++ S
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS-- 217
Query: 93 QPSSEVFELFDRLYLLSGGKTVYFG 117
E + D++ +L G + ++G
Sbjct: 218 --KMEHLKKADKILILHEGSSYFYG 240
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGRTVIASIH 92
+SGG+R R+S+A + L LD P LD + F + + ++ R ++ S
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS-- 218
Query: 93 QPSSEVFELFDRLYLLSGGKTVYFG 117
E + D++ +L G + ++G
Sbjct: 219 --KMEHLKKADKILILHEGSSYFYG 241
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
+S G ++ + +A +L + ++L LDEP++ LD + +TL+
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLK 199
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQ 93
+S G RRV +A +L+ + LD+P +D + V ++ L L G +I+S +
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193
Query: 94 PS 95
S
Sbjct: 194 LS 195
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL---RCLSRDGRTVIASI 91
+SGG+++RVS+A + + D+P S +D+ + + + + + ++ +T I
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN-KTRILVT 186
Query: 92 HQPSSEVFELFDRLYLLSGGKTVYFG 117
H S D + ++SGGK G
Sbjct: 187 H--SMSYLPQVDVIIVMSGGKISEMG 210
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 416 YPMSYLSFHYWALQGQYQND---LKGLWFDNQSPDLPKIPGEYVLENVFQI 463
Y + HYW + ND LKG +F N S +PK+ G +L V +
Sbjct: 202 YSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNL 252
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 34/73 (46%)
Query: 452 PGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQ 511
P ++V+E + W+D VI +++ ++ FV + + ++ LA + +
Sbjct: 123 PIQFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVV 182
Query: 512 QKNGTQNTTVAPD 524
++GT AP+
Sbjct: 183 LRDGTLKEIEAPE 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,430,447
Number of Sequences: 62578
Number of extensions: 615406
Number of successful extensions: 1813
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1710
Number of HSP's gapped (non-prelim): 121
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)