Query 009033
Match_columns 546
No_of_seqs 281 out of 3141
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 17:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 99.9 2.5E-25 8.6E-30 224.2 15.5 117 2-124 116-233 (275)
2 3tui_C Methionine import ATP-b 99.9 4.3E-25 1.5E-29 229.8 15.6 116 2-123 136-252 (366)
3 2olj_A Amino acid ABC transpor 99.9 1.8E-24 6.1E-29 216.6 17.1 115 3-123 133-247 (263)
4 1b0u_A Histidine permease; ABC 99.9 1.6E-24 5.3E-29 217.1 16.3 115 3-123 126-241 (262)
5 1g6h_A High-affinity branched- 99.9 1.5E-24 5.2E-29 216.5 15.6 111 5-121 129-239 (257)
6 3rlf_A Maltose/maltodextrin im 99.9 2.7E-24 9.1E-29 225.1 16.6 117 2-124 106-223 (381)
7 3fvq_A Fe(3+) IONS import ATP- 99.9 2.7E-24 9.3E-29 223.6 16.4 117 2-124 111-228 (359)
8 1vpl_A ABC transporter, ATP-bi 99.9 4.7E-24 1.6E-28 212.8 16.3 115 4-124 121-235 (256)
9 2onk_A Molybdate/tungstate ABC 99.9 4.5E-24 1.6E-28 211.0 14.8 111 7-123 104-215 (240)
10 2pcj_A ABC transporter, lipopr 99.9 5.1E-24 1.7E-28 208.5 14.9 109 4-119 115-223 (224)
11 4g1u_C Hemin import ATP-bindin 99.9 4.5E-24 1.5E-28 214.1 14.8 113 5-123 117-236 (266)
12 3tif_A Uncharacterized ABC tra 99.9 4.3E-24 1.5E-28 210.5 14.3 113 3-122 118-232 (235)
13 1z47_A CYSA, putative ABC-tran 99.9 8.3E-24 2.8E-28 219.9 16.5 116 2-123 118-234 (355)
14 2it1_A 362AA long hypothetical 99.9 6.8E-24 2.3E-28 221.2 15.5 116 2-123 106-222 (362)
15 1oxx_K GLCV, glucose, ABC tran 99.9 9.7E-24 3.3E-28 219.7 15.5 116 2-123 113-229 (353)
16 1g29_1 MALK, maltose transport 99.9 1.6E-23 5.5E-28 219.4 16.7 117 2-124 112-229 (372)
17 2yz2_A Putative ABC transporte 99.9 7.8E-24 2.7E-28 212.5 13.7 113 6-124 113-227 (266)
18 1ji0_A ABC transporter; ATP bi 99.9 8.9E-24 3E-28 208.9 13.8 113 5-123 114-227 (240)
19 1v43_A Sugar-binding transport 99.9 1.1E-23 3.8E-28 220.4 15.3 117 2-124 114-231 (372)
20 2yyz_A Sugar ABC transporter, 99.9 1.1E-23 3.8E-28 219.4 14.9 115 4-124 108-223 (359)
21 2nq2_C Hypothetical ABC transp 99.9 2.1E-23 7.1E-28 207.8 15.6 111 5-122 104-215 (253)
22 2ihy_A ABC transporter, ATP-bi 99.9 1.1E-23 3.6E-28 212.9 13.2 112 5-122 137-250 (279)
23 2d2e_A SUFC protein; ABC-ATPas 99.9 2.8E-23 9.6E-28 206.5 15.4 111 5-121 117-230 (250)
24 2zu0_C Probable ATP-dependent 99.9 2.9E-23 9.9E-28 208.4 15.5 115 5-124 138-254 (267)
25 2qi9_C Vitamin B12 import ATP- 99.9 5.2E-23 1.8E-27 204.4 14.7 110 7-122 104-220 (249)
26 3d31_A Sulfate/molybdate ABC t 99.9 5.5E-23 1.9E-27 213.4 14.1 110 8-123 106-216 (348)
27 2ff7_A Alpha-hemolysin translo 99.9 3.7E-22 1.3E-26 198.1 13.9 112 8-123 113-231 (247)
28 2ixe_A Antigen peptide transpo 99.9 4.7E-22 1.6E-26 200.0 13.9 109 9-124 134-245 (271)
29 2pjz_A Hypothetical protein ST 99.9 5.1E-22 1.7E-26 198.8 13.8 108 7-123 105-214 (263)
30 3nh6_A ATP-binding cassette SU 99.9 1.1E-21 3.9E-26 200.1 15.9 113 8-124 158-277 (306)
31 1mv5_A LMRA, multidrug resista 99.9 4.6E-22 1.6E-26 196.9 11.9 113 8-123 107-225 (243)
32 2ghi_A Transport protein; mult 99.9 1E-21 3.5E-26 196.4 14.4 112 8-123 123-241 (260)
33 3gd7_A Fusion complex of cysti 99.8 2.6E-21 8.8E-26 203.7 10.7 115 7-124 122-242 (390)
34 3b60_A Lipid A export ATP-bind 99.8 1.9E-20 6.5E-25 207.6 15.0 114 7-124 447-567 (582)
35 3b5x_A Lipid A export ATP-bind 99.8 1.7E-20 5.9E-25 208.0 14.5 113 7-123 447-566 (582)
36 2pze_A Cystic fibrosis transme 99.8 1.5E-20 5E-25 184.5 12.2 110 10-123 100-217 (229)
37 2yl4_A ATP-binding cassette SU 99.8 2.1E-20 7.3E-25 207.8 14.8 113 7-123 450-569 (595)
38 2cbz_A Multidrug resistance-as 99.8 1.6E-20 5.5E-25 185.2 12.3 90 31-123 124-216 (237)
39 3qf4_A ABC transporter, ATP-bi 99.8 5E-20 1.7E-24 204.4 15.6 112 9-124 448-566 (587)
40 3j16_B RLI1P; ribosome recycli 99.8 2E-20 6.7E-25 207.5 11.7 111 8-124 446-559 (608)
41 4a82_A Cystic fibrosis transme 99.8 7.9E-20 2.7E-24 202.5 15.4 113 8-124 445-564 (578)
42 1sgw_A Putative ABC transporte 99.8 8.2E-21 2.8E-25 184.4 5.3 96 7-109 112-207 (214)
43 3qf4_B Uncharacterized ABC tra 99.8 4.9E-20 1.7E-24 204.9 11.9 112 9-124 460-578 (598)
44 3bk7_A ABC transporter ATP-bin 99.8 9.1E-20 3.1E-24 202.4 13.6 112 7-124 449-563 (607)
45 1yqt_A RNAse L inhibitor; ATP- 99.8 6E-20 2E-24 201.5 11.9 112 7-124 379-493 (538)
46 2bbs_A Cystic fibrosis transme 99.8 1.7E-19 5.8E-24 182.9 12.1 110 10-123 129-246 (290)
47 3ux8_A Excinuclease ABC, A sub 99.8 2.9E-19 9.8E-24 201.3 15.3 109 8-123 521-639 (670)
48 3ozx_A RNAse L inhibitor; ATP 99.8 1.9E-19 6.4E-24 197.3 12.3 110 8-123 364-476 (538)
49 3ux8_A Excinuclease ABC, A sub 99.8 3.8E-19 1.3E-23 200.3 13.4 104 13-123 185-297 (670)
50 3bk7_A ABC transporter ATP-bin 99.8 3.1E-19 1.1E-23 198.1 11.8 99 8-112 207-305 (607)
51 1yqt_A RNAse L inhibitor; ATP- 99.8 2.5E-19 8.6E-24 196.6 10.9 99 8-112 137-235 (538)
52 3j16_B RLI1P; ribosome recycli 99.8 4.7E-19 1.6E-23 196.4 12.6 103 8-116 200-302 (608)
53 3ozx_A RNAse L inhibitor; ATP 99.8 3.6E-19 1.2E-23 195.1 9.2 101 8-115 117-217 (538)
54 3pih_A Uvrabc system protein A 99.8 1.6E-18 5.4E-23 199.2 14.8 110 7-123 782-901 (916)
55 2iw3_A Elongation factor 3A; a 99.8 1.7E-18 5.9E-23 199.2 15.0 109 7-124 525-635 (986)
56 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.6E-18 8.9E-23 157.2 12.2 83 29-113 52-142 (148)
57 4f4c_A Multidrug resistance pr 99.8 1.2E-18 4.1E-23 209.1 12.1 114 7-124 1184-1304(1321)
58 2vf7_A UVRA2, excinuclease ABC 99.8 3E-18 1E-22 195.3 13.7 110 7-123 707-826 (842)
59 3pih_A Uvrabc system protein A 99.7 3.8E-18 1.3E-22 196.0 13.8 108 10-124 444-560 (916)
60 2r6f_A Excinuclease ABC subuni 99.7 5.5E-18 1.9E-22 193.8 14.8 109 8-123 823-941 (972)
61 3g5u_A MCG1178, multidrug resi 99.7 5.7E-18 1.9E-22 202.8 15.0 101 20-124 1158-1258(1284)
62 2ygr_A Uvrabc system protein A 99.7 8.3E-18 2.9E-22 192.9 15.2 110 8-124 841-960 (993)
63 2r6f_A Excinuclease ABC subuni 99.7 5.7E-18 2E-22 193.6 12.6 111 5-123 480-599 (972)
64 4f4c_A Multidrug resistance pr 99.7 7.1E-18 2.4E-22 202.4 13.7 114 7-124 521-641 (1321)
65 2ygr_A Uvrabc system protein A 99.7 9.6E-18 3.3E-22 192.4 14.0 112 5-124 497-617 (993)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 6.4E-18 2.2E-22 176.9 10.4 84 30-115 275-364 (365)
67 3g5u_A MCG1178, multidrug resi 99.7 1.2E-17 4.2E-22 199.9 13.7 100 21-124 514-613 (1284)
68 2vf7_A UVRA2, excinuclease ABC 99.7 1.8E-17 6.1E-22 189.0 12.9 111 5-123 355-474 (842)
69 2iw3_A Elongation factor 3A; a 99.7 1.2E-17 4.3E-22 192.1 9.0 103 7-118 877-981 (986)
70 4aby_A DNA repair protein RECN 99.7 4.3E-16 1.5E-20 165.1 13.9 80 35-117 296-381 (415)
71 3kta_B Chromosome segregation 99.6 3.4E-14 1.1E-18 133.2 13.6 90 31-123 61-157 (173)
72 4ad8_A DNA repair protein RECN 99.5 7.1E-15 2.4E-19 160.6 9.7 79 31-112 393-474 (517)
73 3qkt_A DNA double-strand break 99.5 8.5E-15 2.9E-19 151.6 9.4 77 31-109 245-327 (339)
74 1e69_A Chromosome segregation 99.5 1.8E-14 6.1E-19 148.0 11.8 88 31-121 216-310 (322)
75 2o5v_A DNA replication and rep 99.5 1.1E-14 3.8E-19 151.7 8.0 86 29-122 259-354 (359)
76 3auy_A DNA double-strand break 99.4 3.4E-13 1.1E-17 141.3 12.4 100 7-109 242-359 (371)
77 2npi_A Protein CLP1; CLP1-PCF1 99.4 3.4E-14 1.2E-18 152.7 2.0 101 10-122 218-336 (460)
78 1ye8_A Protein THEP1, hypothet 99.4 5.4E-13 1.8E-17 125.5 7.4 78 31-115 73-159 (178)
79 4gp7_A Metallophosphoesterase; 99.3 2.8E-13 9.7E-18 126.2 3.4 65 34-99 83-163 (171)
80 1w1w_A Structural maintenance 99.3 2.1E-12 7.2E-17 137.7 10.0 75 33-109 332-410 (430)
81 1tf7_A KAIC; homohexamer, hexa 99.1 2.4E-11 8.2E-16 132.9 6.0 81 31-112 350-444 (525)
82 3b85_A Phosphate starvation-in 99.1 2.2E-12 7.6E-17 124.3 -3.0 51 38-94 108-158 (208)
83 3thx_A DNA mismatch repair pro 98.9 7.2E-10 2.5E-14 128.0 6.9 90 31-122 718-811 (934)
84 1tq4_A IIGP1, interferon-induc 98.9 5.6E-11 1.9E-15 125.8 -2.7 92 8-106 135-248 (413)
85 1cr0_A DNA primase/helicase; R 98.9 2.1E-09 7.2E-14 108.4 8.4 80 33-113 128-237 (296)
86 1znw_A Guanylate kinase, GMP k 98.6 2.1E-10 7.2E-15 109.8 -8.2 61 48-109 137-202 (207)
87 2o8b_B DNA mismatch repair pro 98.6 3.5E-08 1.2E-12 115.3 8.3 84 34-120 851-938 (1022)
88 3thx_B DNA mismatch repair pro 98.6 2.2E-08 7.5E-13 115.5 6.5 81 32-115 733-816 (918)
89 2pt7_A CAG-ALFA; ATPase, prote 98.6 4.9E-09 1.7E-13 107.9 0.2 68 37-113 225-292 (330)
90 2w0m_A SSO2452; RECA, SSPF, un 98.6 8.6E-08 2.9E-12 91.9 8.3 79 34-112 103-193 (235)
91 2v9p_A Replication protein E1; 98.6 5.9E-10 2E-14 113.4 -8.0 87 10-128 184-270 (305)
92 1nlf_A Regulatory protein REPA 98.5 1E-07 3.6E-12 95.2 7.6 77 10-94 99-181 (279)
93 2ehv_A Hypothetical protein PH 98.5 1E-07 3.6E-12 92.6 5.6 72 37-109 120-206 (251)
94 2cvh_A DNA repair and recombin 98.3 1.2E-06 4E-11 83.4 8.1 78 34-111 84-185 (220)
95 1tf7_A KAIC; homohexamer, hexa 98.3 1.5E-07 5.1E-12 102.8 1.2 72 41-112 126-211 (525)
96 3b9q_A Chloroplast SRP recepto 98.3 1.9E-07 6.6E-12 94.8 1.6 72 32-113 202-284 (302)
97 4a74_A DNA repair and recombin 98.2 7.9E-07 2.7E-11 85.1 5.3 103 8-112 74-201 (231)
98 1ewq_A DNA mismatch repair pro 98.2 5.1E-07 1.8E-11 102.4 4.3 66 32-102 633-704 (765)
99 1pzn_A RAD51, DNA repair and r 98.2 9.1E-07 3.1E-11 91.6 4.9 82 36-118 208-309 (349)
100 2og2_A Putative signal recogni 98.1 4E-07 1.4E-11 94.6 1.2 72 32-113 259-341 (359)
101 1wb9_A DNA mismatch repair pro 98.1 8.2E-07 2.8E-11 101.3 3.7 82 34-118 669-752 (800)
102 3sop_A Neuronal-specific septi 98.1 1.3E-07 4.3E-12 94.6 -3.8 53 33-93 97-149 (270)
103 2obl_A ESCN; ATPase, hydrolase 98.1 2.7E-07 9.1E-12 95.6 -2.0 78 32-122 169-253 (347)
104 2dpy_A FLII, flagellum-specifi 98.1 2.5E-07 8.7E-12 98.7 -2.3 78 32-122 256-342 (438)
105 1z6g_A Guanylate kinase; struc 98.0 3.5E-08 1.2E-12 95.3 -10.0 49 34-82 122-175 (218)
106 2eyu_A Twitching motility prot 97.9 4.5E-06 1.5E-10 82.9 4.2 60 42-110 88-147 (261)
107 3aez_A Pantothenate kinase; tr 97.9 2.4E-07 8.1E-12 94.5 -5.2 55 7-67 155-209 (312)
108 1pui_A ENGB, probable GTP-bind 97.9 1.3E-05 4.4E-10 75.5 5.6 74 9-86 128-202 (210)
109 2i3b_A HCR-ntpase, human cance 97.7 1E-06 3.6E-11 83.2 -4.2 79 32-117 81-169 (189)
110 3ec2_A DNA replication protein 97.7 3.7E-05 1.3E-09 71.0 6.1 50 48-97 96-146 (180)
111 3asz_A Uridine kinase; cytidin 97.7 9.4E-08 3.2E-12 91.0 -12.9 83 7-94 67-161 (211)
112 3jvv_A Twitching mobility prot 97.7 1.4E-05 4.7E-10 83.0 2.4 59 44-111 188-246 (356)
113 1n0w_A DNA repair protein RAD5 97.5 0.00018 6E-09 69.2 7.7 78 34-112 98-210 (243)
114 2qnr_A Septin-2, protein NEDD5 97.4 7E-06 2.4E-10 83.1 -4.0 57 31-95 110-168 (301)
115 2bdt_A BH3686; alpha-beta prot 97.3 9E-07 3.1E-11 82.7 -10.6 80 36-122 96-182 (189)
116 2kjq_A DNAA-related protein; s 97.2 0.00015 5E-09 65.6 3.0 50 48-98 79-129 (149)
117 2jeo_A Uridine-cytidine kinase 97.0 4.8E-05 1.6E-09 74.2 -2.3 73 32-124 114-187 (245)
118 1sxj_E Activator 1 40 kDa subu 96.9 0.00092 3.1E-08 68.2 6.1 55 49-105 131-185 (354)
119 2r6a_A DNAB helicase, replicat 96.9 0.0032 1.1E-07 67.0 10.6 79 33-113 294-401 (454)
120 3lda_A DNA repair protein RAD5 96.7 0.0017 5.8E-08 68.2 6.6 73 40-112 259-364 (400)
121 3szr_A Interferon-induced GTP- 96.3 0.0033 1.1E-07 69.6 5.5 75 51-125 145-238 (608)
122 2ewv_A Twitching motility prot 96.3 0.0016 5.6E-08 67.6 2.8 59 42-109 199-257 (372)
123 2dr3_A UPF0273 protein PH0284; 96.2 0.013 4.3E-07 56.0 8.5 60 51-110 127-196 (247)
124 1lw7_A Transcriptional regulat 96.1 0.0008 2.7E-08 69.6 -0.5 73 34-108 258-341 (365)
125 1nij_A Hypothetical protein YJ 96.1 0.00067 2.3E-08 68.9 -1.2 57 34-103 141-197 (318)
126 2qag_C Septin-7; cell cycle, c 96.1 0.00067 2.3E-08 71.7 -1.3 54 35-93 119-176 (418)
127 1rj9_A FTSY, signal recognitio 96.0 0.0015 5.2E-08 66.0 1.1 55 35-94 203-258 (304)
128 2zr9_A Protein RECA, recombina 95.8 0.026 8.9E-07 58.0 9.3 78 41-118 126-237 (349)
129 1udx_A The GTP-binding protein 95.6 0.003 1E-07 66.6 1.1 70 31-105 249-319 (416)
130 1odf_A YGR205W, hypothetical 3 95.5 0.0007 2.4E-08 68.0 -4.0 37 31-69 131-169 (290)
131 2bbw_A Adenylate kinase 4, AK4 95.5 0.00027 9.1E-09 68.8 -6.9 46 31-83 149-199 (246)
132 2xau_A PRE-mRNA-splicing facto 95.4 0.0078 2.7E-07 68.5 3.8 80 32-112 188-270 (773)
133 2f1r_A Molybdopterin-guanine d 95.3 0.00056 1.9E-08 63.3 -4.9 70 9-85 84-164 (171)
134 2ce7_A Cell division protein F 94.7 0.044 1.5E-06 58.7 7.1 58 37-94 93-164 (476)
135 2ius_A DNA translocase FTSK; n 94.5 0.0023 8E-08 69.1 -3.4 88 5-96 242-344 (512)
136 1s96_A Guanylate kinase, GMP k 93.9 0.065 2.2E-06 51.2 5.7 63 46-127 101-163 (219)
137 1ni3_A YCHF GTPase, YCHF GTP-b 93.7 0.0003 1E-08 73.7 -12.1 67 52-121 139-210 (392)
138 3bh0_A DNAB-like replicative h 93.3 0.25 8.6E-06 49.6 9.2 75 35-109 134-264 (315)
139 4a1f_A DNAB helicase, replicat 93.3 0.096 3.3E-06 53.5 6.0 76 2-90 85-162 (338)
140 2z4s_A Chromosomal replication 92.8 0.023 7.7E-07 60.3 0.5 69 52-120 194-264 (440)
141 1zp6_A Hypothetical protein AT 92.0 0.021 7.1E-07 52.5 -1.0 54 32-93 107-160 (191)
142 3euj_A Chromosome partition pr 91.0 0.34 1.2E-05 51.8 7.1 71 32-109 377-464 (483)
143 1g5t_A COB(I)alamin adenosyltr 90.1 0.23 8E-06 46.6 4.3 73 40-113 106-182 (196)
144 1ls1_A Signal recognition part 89.9 0.6 2.1E-05 46.5 7.4 46 36-81 164-210 (295)
145 2px0_A Flagellar biosynthesis 89.7 0.15 5.3E-06 50.9 2.9 70 42-116 174-247 (296)
146 1vma_A Cell division protein F 89.5 0.31 1E-05 49.0 4.9 45 34-81 165-212 (306)
147 2e87_A Hypothetical protein PH 88.5 0.52 1.8E-05 48.1 5.9 60 33-94 230-292 (357)
148 1lw7_A Transcriptional regulat 88.4 0.24 8.4E-06 50.7 3.4 29 34-62 296-329 (365)
149 2gza_A Type IV secretion syste 87.4 0.1 3.5E-06 53.7 -0.3 69 36-113 236-304 (361)
150 3b9p_A CG5977-PA, isoform A; A 85.6 2 6.8E-05 42.0 8.1 72 36-107 97-185 (297)
151 2b8t_A Thymidine kinase; deoxy 85.4 1.2 4.1E-05 42.6 6.1 53 52-109 89-150 (223)
152 1lvg_A Guanylate kinase, GMP k 82.5 0.02 6.9E-07 53.6 -7.7 53 48-109 120-172 (198)
153 2qag_B Septin-6, protein NEDD5 81.8 1.6 5.4E-05 45.9 5.7 58 33-93 160-218 (427)
154 2eyu_A Twitching motility prot 81.8 0.0016 5.5E-08 64.3 -16.3 70 21-93 160-239 (261)
155 2q6t_A DNAB replication FORK h 81.4 7.2 0.00025 40.8 10.8 66 45-110 301-397 (444)
156 1oix_A RAS-related protein RAB 81.3 0.35 1.2E-05 44.2 0.5 39 40-80 151-189 (191)
157 2rcn_A Probable GTPase ENGC; Y 80.4 0.77 2.6E-05 47.1 2.7 42 2-49 287-328 (358)
158 2ewv_A Twitching motility prot 78.0 0.0048 1.6E-07 64.1 -15.0 72 22-96 272-353 (372)
159 1fnn_A CDC6P, cell division co 77.9 6.3 0.00022 39.5 8.8 43 51-94 124-169 (389)
160 2orv_A Thymidine kinase; TP4A 74.2 5.3 0.00018 38.3 6.4 55 49-109 87-150 (234)
161 3c8u_A Fructokinase; YP_612366 72.8 0.031 1.1E-06 52.5 -9.6 72 33-125 110-182 (208)
162 2qtf_A Protein HFLX, GTP-bindi 72.5 2 6.8E-05 44.0 3.2 71 7-82 278-353 (364)
163 1u94_A RECA protein, recombina 71.7 15 0.00051 37.4 9.6 76 42-117 129-238 (356)
164 1l8q_A Chromosomal replication 71.6 3 0.0001 41.4 4.2 47 50-96 96-143 (324)
165 2z43_A DNA repair and recombin 71.6 4.2 0.00014 40.6 5.3 54 40-93 188-257 (324)
166 2w58_A DNAI, primosome compone 71.5 2.4 8.1E-05 38.8 3.2 53 49-101 112-166 (202)
167 2oap_1 GSPE-2, type II secreti 68.7 0.0075 2.6E-07 65.3 -16.8 57 33-102 399-457 (511)
168 1xx6_A Thymidine kinase; NESG, 68.7 8.1 0.00028 35.7 6.2 53 52-109 81-142 (191)
169 1v5w_A DMC1, meiotic recombina 67.1 6.9 0.00023 39.5 5.9 53 41-93 204-273 (343)
170 3bgw_A DNAB-like replicative h 67.0 14 0.00047 38.8 8.4 59 52-110 308-394 (444)
171 2f9l_A RAB11B, member RAS onco 66.9 3.2 0.00011 37.7 3.1 37 43-81 130-166 (199)
172 1in4_A RUVB, holliday junction 65.7 0.39 1.3E-05 48.6 -3.9 51 32-104 160-211 (334)
173 2j9r_A Thymidine kinase; TK1, 65.0 8.6 0.00029 36.3 5.6 53 52-109 101-162 (214)
174 2r8r_A Sensor protein; KDPD, P 64.3 6.6 0.00023 37.5 4.7 48 45-92 77-125 (228)
175 2qm8_A GTPase/ATPase; G protei 63.5 2.8 9.5E-05 42.4 2.1 46 33-82 209-260 (337)
176 1b9m_A Protein (mode); DNA-bin 62.2 3.7 0.00013 39.5 2.6 47 2-54 47-93 (265)
177 3hr8_A Protein RECA; alpha and 60.2 49 0.0017 33.5 10.8 77 41-117 126-236 (356)
178 3k1j_A LON protease, ATP-depen 59.8 1.9 6.5E-05 47.2 0.0 46 33-79 182-227 (604)
179 2qgz_A Helicase loader, putati 56.4 6.9 0.00024 38.8 3.5 53 50-102 212-266 (308)
180 4ag6_A VIRB4 ATPase, type IV s 52.0 18 0.00061 36.8 5.9 44 52-95 262-308 (392)
181 3d8b_A Fidgetin-like protein 1 50.4 33 0.0011 34.4 7.6 53 42-94 166-231 (357)
182 4dgh_A Sulfate permease family 49.2 27 0.00094 29.3 5.8 44 50-93 46-90 (130)
183 2qby_A CDC6 homolog 1, cell di 48.8 5.3 0.00018 39.9 1.2 43 52-94 128-173 (386)
184 3bos_A Putative DNA replicatio 48.6 12 0.00041 34.4 3.6 45 51-95 103-149 (242)
185 1njg_A DNA polymerase III subu 46.5 12 0.00042 33.9 3.3 42 52-95 126-167 (250)
186 3e70_C DPA, signal recognition 46.3 19 0.00064 36.2 4.8 45 43-94 234-279 (328)
187 3szr_A Interferon-induced GTP- 45.0 13 0.00044 40.7 3.7 60 32-92 162-223 (608)
188 3cf0_A Transitional endoplasmi 44.3 26 0.00088 34.2 5.5 50 45-94 101-164 (301)
189 2orw_A Thymidine kinase; TMTK, 43.9 15 0.0005 33.4 3.4 53 52-109 76-137 (184)
190 1jjv_A Dephospho-COA kinase; P 41.5 3.9 0.00013 37.4 -1.0 69 36-109 61-131 (206)
191 3h4m_A Proteasome-activating n 41.3 27 0.00092 33.3 5.0 51 44-94 102-166 (285)
192 1xp8_A RECA protein, recombina 41.0 94 0.0032 31.4 9.2 72 41-113 139-245 (366)
193 3llm_A ATP-dependent RNA helic 40.8 33 0.0011 31.9 5.4 67 36-104 162-229 (235)
194 4dgf_A Sulfate transporter sul 39.8 35 0.0012 29.0 5.0 43 51-93 50-93 (135)
195 2x8a_A Nuclear valosin-contain 39.6 0.52 1.8E-05 46.3 -7.9 30 32-63 135-164 (274)
196 3llo_A Prestin; STAS domain, c 38.7 48 0.0016 28.2 5.7 42 52-93 63-105 (143)
197 1sxj_D Activator 1 41 kDa subu 38.1 19 0.00065 35.4 3.4 43 52-96 133-175 (353)
198 1m3s_A Hypothetical protein YC 38.0 41 0.0014 29.9 5.4 42 71-112 93-134 (186)
199 3oiz_A Antisigma-factor antago 37.5 24 0.00082 28.4 3.3 53 50-104 41-94 (99)
200 1tk9_A Phosphoheptose isomeras 36.7 41 0.0014 29.9 5.2 42 71-112 124-165 (188)
201 3sho_A Transcriptional regulat 35.8 44 0.0015 29.7 5.2 42 71-112 101-142 (187)
202 3co5_A Putative two-component 35.7 55 0.0019 27.8 5.7 44 51-95 74-117 (143)
203 1q57_A DNA primase/helicase; d 35.6 1.2E+02 0.0041 31.7 9.4 67 42-109 342-440 (503)
204 2xhz_A KDSD, YRBH, arabinose 5 35.5 45 0.0015 29.5 5.2 42 70-111 109-150 (183)
205 3ny7_A YCHM protein, sulfate t 34.7 30 0.001 28.8 3.6 43 51-94 44-87 (118)
206 2kln_A Probable sulphate-trans 34.4 9.5 0.00033 32.4 0.4 73 52-126 47-121 (130)
207 1p9r_A General secretion pathw 33.9 1.1 3.6E-05 47.1 -7.0 36 13-57 279-314 (418)
208 2xbl_A Phosphoheptose isomeras 32.9 50 0.0017 29.6 5.1 41 71-111 130-170 (198)
209 1sbo_A Putative anti-sigma fac 32.5 1.1E+02 0.0039 24.0 6.8 46 48-93 38-85 (110)
210 2qz4_A Paraplegin; AAA+, SPG7, 32.4 83 0.0029 29.1 6.8 48 47-94 93-155 (262)
211 3fxa_A SIS domain protein; str 30.9 38 0.0013 30.6 4.0 42 71-112 106-147 (201)
212 1x92_A APC5045, phosphoheptose 30.2 74 0.0025 28.6 5.8 42 71-112 127-171 (199)
213 2i1q_A DNA repair and recombin 30.0 44 0.0015 32.8 4.5 68 42-110 191-290 (322)
214 1vim_A Hypothetical protein AF 29.8 57 0.002 29.6 5.0 61 52-112 73-144 (200)
215 2qp9_X Vacuolar protein sortin 29.6 1.2E+02 0.0041 30.2 7.8 61 46-106 137-212 (355)
216 1xwi_A SKD1 protein; VPS4B, AA 28.9 1.8E+02 0.0062 28.4 8.9 61 45-105 98-173 (322)
217 1ega_A Protein (GTP-binding pr 28.0 30 0.001 33.9 2.9 64 35-106 101-170 (301)
218 3etn_A Putative phosphosugar i 27.7 78 0.0027 29.3 5.6 43 70-112 119-163 (220)
219 3hu3_A Transitional endoplasmi 26.9 58 0.002 34.4 5.0 50 45-94 290-350 (489)
220 3fj1_A Putative phosphosugar i 26.7 75 0.0026 31.8 5.6 43 70-112 104-146 (344)
221 3n70_A Transport activator; si 26.3 74 0.0025 27.0 4.8 45 52-98 76-120 (145)
222 2chg_A Replication factor C sm 26.0 63 0.0021 28.6 4.5 42 51-94 101-142 (226)
223 3k7i_B IHH, HHG-2, indian hedg 25.9 23 0.00078 32.3 1.3 33 50-82 69-101 (187)
224 3cmw_A Protein RECA, recombina 25.6 2.3E+02 0.0077 34.9 10.2 73 41-113 797-903 (1706)
225 3eua_A Putative fructose-amino 25.3 79 0.0027 31.3 5.4 43 70-112 87-129 (329)
226 4fcw_A Chaperone protein CLPB; 24.7 1.2E+02 0.004 29.0 6.5 56 45-101 111-177 (311)
227 2yva_A DNAA initiator-associat 24.5 1E+02 0.0035 27.4 5.7 41 71-111 123-166 (196)
228 2i2w_A Phosphoheptose isomeras 24.0 71 0.0024 29.2 4.5 41 71-111 145-185 (212)
229 3jte_A Response regulator rece 23.8 1.8E+02 0.0063 23.5 6.9 39 51-93 48-86 (143)
230 3trj_A Phosphoheptose isomeras 23.8 90 0.0031 28.4 5.1 43 70-112 127-172 (201)
231 1jeo_A MJ1247, hypothetical pr 22.5 86 0.003 27.5 4.6 39 71-110 96-134 (180)
232 1srr_A SPO0F, sporulation resp 22.4 2.6E+02 0.009 21.8 7.4 39 51-93 46-84 (124)
233 2rdm_A Response regulator rece 22.3 2E+02 0.007 22.7 6.7 39 52-93 50-89 (132)
234 3t34_A Dynamin-related protein 22.2 58 0.002 32.5 3.7 57 35-92 155-212 (360)
235 1tue_A Replication protein E1; 21.4 1.1E+02 0.0036 28.7 5.0 55 51-109 102-175 (212)
236 3n1g_B Desert hedgehog protein 21.4 31 0.0011 31.2 1.3 31 52-82 63-93 (170)
237 3hba_A Putative phosphosugar i 21.4 89 0.0031 31.1 4.9 43 70-112 103-145 (334)
238 2nly_A BH1492 protein, diverge 21.3 3.9E+02 0.013 25.3 9.2 61 1-66 80-140 (245)
239 1lv7_A FTSH; alpha/beta domain 21.3 1.7E+02 0.0057 27.2 6.7 45 50-94 102-160 (257)
240 1tmy_A CHEY protein, TMY; chem 21.3 2.4E+02 0.0084 21.8 6.9 40 51-93 46-85 (120)
241 4b4t_M 26S protease regulatory 21.1 1.8E+02 0.0062 30.1 7.3 74 42-121 264-354 (434)
242 2ka5_A Putative anti-sigma fac 20.6 1.7E+02 0.0057 24.2 5.8 42 51-92 50-92 (125)
243 2zts_A Putative uncharacterize 20.3 99 0.0034 28.2 4.8 60 50-109 133-206 (251)
244 3fkj_A Putative phosphosugar i 20.2 99 0.0034 30.9 5.0 42 70-111 102-143 (347)
245 3cmw_A Protein RECA, recombina 20.1 2.5E+02 0.0085 34.6 9.1 74 44-117 451-558 (1706)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=2.5e-25 Score=224.15 Aligned_cols=117 Identities=28% Similarity=0.459 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++.+|+.+ .+|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus 116 ~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 116 PEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 35566788999999999999888855 4699999999999999999999999999999999999999999999998
Q ss_pred -hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 82 -RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 -~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
++|+|||+++|++ .++.+++|+|++|++|++++.|+++++.+
T Consensus 191 ~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 191 KELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred hhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 5699999999996 67889999999999999999999988643
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=4.3e-25 Score=229.81 Aligned_cols=116 Identities=28% Similarity=0.416 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||.+.+|+.+ .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus 136 ~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~ 210 (366)
T 3tui_C 136 PKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210 (366)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 45667788999999999999888754 5799999999999999999999999999999999999999999999998
Q ss_pred h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ .|.|||++||++ .++.++||||++|++|++++.|+++++.
T Consensus 211 ~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 211 RRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 6 599999999995 7899999999999999999999998764
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=1.8e-24 Score=216.63 Aligned_cols=115 Identities=28% Similarity=0.442 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033 3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+++.+++++++++.+||.+..|+.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus 133 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 207 (263)
T 2olj_A 133 REKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207 (263)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 3455678899999999998888755 46999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|+|||+++|++ .++.+++|++++|++|++++.|+++++.
T Consensus 208 ~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 208 EGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp TTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 899999999995 7888999999999999999999998764
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.92 E-value=1.6e-24 Score=217.06 Aligned_cols=115 Identities=26% Similarity=0.404 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 3 WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+++.+++++++++.+||.+. .++.+ .+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 126 ~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 126 KHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 34556788999999999988 88755 4699999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++|+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 201 ~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 201 EEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8899999999995 7888999999999999999999988764
No 5
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.92 E-value=1.5e-24 Score=216.54 Aligned_cols=111 Identities=23% Similarity=0.362 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||++..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|
T Consensus 129 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 203 (257)
T 1g6h_A 129 EMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 203 (257)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCchhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 456788999999999988888654 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~ 121 (546)
+|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus 204 ~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCC-STTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CEEEEEecCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999996 67889999999999999999999887
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=2.7e-24 Score=225.14 Aligned_cols=117 Identities=26% Similarity=0.427 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++..|+.+ .+|||||||||+|||+|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~ 180 (381)
T 3rlf_A 106 KKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 (381)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 45677889999999999999888854 5799999999999999999999999999999999999999999999997
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
++ |.|+|++||++ .++..++|||++|++|+++..|+++++.+
T Consensus 181 ~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 181 KRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 64 99999999994 88999999999999999999999998753
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.91 E-value=2.7e-24 Score=223.58 Aligned_cols=117 Identities=21% Similarity=0.378 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++..|+.+ .+|||||||||+|||+|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~ 185 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34567788999999999999988855 5699999999999999999999999999999999999999999888876
Q ss_pred -hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 82 -RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 -~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+.|.|+|++||+ ..++..++|||++|++|+++..|+++++.+
T Consensus 186 ~~~g~tvi~vTHd-~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 186 RANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp HHTTCEEEEECCC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEEeCC-HHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 469999999999 488999999999999999999999998753
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=4.7e-24 Score=212.80 Aligned_cols=115 Identities=37% Similarity=0.438 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||++..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 121 ~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 195 (256)
T 1vpl_A 121 SEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195 (256)
T ss_dssp HHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC
Confidence 344567899999999998888865 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|+|||+++|++ .++..++|++++|++|++++.|+++++.+
T Consensus 196 g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 196 GLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999995 77888999999999999999999887644
No 9
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=4.5e-24 Score=210.96 Aligned_cols=111 Identities=29% Similarity=0.430 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~ 85 (546)
+++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ +|+
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~ 178 (240)
T 2onk_A 104 DRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178 (240)
T ss_dssp HHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 577899999999998888865 46999999999999999999999999999999999999999999999976 499
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 179 tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 179 PILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp CEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999995 7788999999999999999999988764
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.91 E-value=5.1e-24 Score=208.48 Aligned_cols=109 Identities=32% Similarity=0.385 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 115 KEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 445678899999999998888855 469999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009033 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~ 119 (546)
|+|||+++|++ .++ +++|++++|++|++++.|+.
T Consensus 190 g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 190 GTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp TCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 99999999995 555 89999999999999999863
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=4.5e-24 Score=214.14 Aligned_cols=113 Identities=32% Similarity=0.425 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 009033 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLR 78 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~------~P~il~LDEPtsgLD~~~~~~v~~~L~ 78 (546)
+.+++++++++.+||.+..++.+ ..|||||||||+||++|+. +|++|+|||||+|||+.++.++++.|+
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~ 191 (266)
T 4g1u_C 117 QDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191 (266)
T ss_dssp THHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 45678899999999999888855 4699999999999999999 999999999999999999999999999
Q ss_pred HHHhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 79 CLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 79 ~l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 192 ~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 192 QLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99875 57999999995 7889999999999999999999998763
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.91 E-value=4.3e-24 Score=210.49 Aligned_cols=113 Identities=26% Similarity=0.354 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 3 WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 3 ~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+++..+++.++++.+||.+. .++. +.+|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 118 GEERRKRALECLKMAELEERFANHK-----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45667788999999999875 4664 45799999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++ |+|||++||++ . +.+++|++++|++|+++..|++++.
T Consensus 193 ~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 193 EEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcChhhh
Confidence 65 99999999996 4 5689999999999999999987764
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=8.3e-24 Score=219.88 Aligned_cols=116 Identities=27% Similarity=0.449 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++..|+.+ .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 192 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34566788999999999999888855 5699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ |.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus 193 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 193 DEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 64 99999999995 7899999999999999999999998864
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.91 E-value=6.8e-24 Score=221.25 Aligned_cols=116 Identities=26% Similarity=0.448 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++..++.+ .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 106 PREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 34566788999999999999888855 5699999999999999999999999999999999999999999999997
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ |.|+|++||++ .++..++|+|++|++|+++..|+++++.
T Consensus 181 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 181 KELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 64 99999999995 7899999999999999999999999874
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=9.7e-24 Score=219.70 Aligned_cols=116 Identities=28% Similarity=0.435 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++..|+.+ .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus 113 ~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 187 (353)
T 1oxx_K 113 SKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187 (353)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 34566788999999999999988855 5699999999999999999999999999999999999999999999997
Q ss_pred h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ .|.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus 188 ~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 188 SRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 6 499999999995 7899999999999999999999998864
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.90 E-value=1.6e-23 Score=219.38 Aligned_cols=117 Identities=27% Similarity=0.461 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++..++.+ .+|||||||||+|||+|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus 112 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 186 (372)
T 1g29_1 112 PRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186 (372)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHH
Confidence 34566788999999999999888855 5699999999999999999999999999999999999999999999997
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
++ |.|+|++||++ .++..++|++++|++|+++..|+++++.+
T Consensus 187 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 187 RQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 64 99999999995 78999999999999999999999988753
No 17
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.90 E-value=7.8e-24 Score=212.46 Aligned_cols=113 Identities=35% Similarity=0.464 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHcCCc--ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 6 KRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
.+++++++++.+||. +..++.+ .+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 113 ~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 187 (266)
T 2yz2_A 113 PVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187 (266)
T ss_dssp SHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc
Confidence 356789999999998 8888755 569999999999999999999999999999999999999999999999877
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|+|||+++|++ .++..++|++++|++|+++..|+++++.+
T Consensus 188 g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 188 GKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp TCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999996 67888999999999999999999887653
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=8.9e-24 Score=208.89 Aligned_cols=113 Identities=22% Similarity=0.363 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 5 EKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+.+++++++++.++ |.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 114 ~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 188 (240)
T 1ji0_A 114 GIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188 (240)
T ss_dssp HHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 44567888999995 988777754 569999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus 189 g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 189 GTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999995 6788999999999999999999887653
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.90 E-value=1.1e-23 Score=220.35 Aligned_cols=117 Identities=24% Similarity=0.404 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.+||++..++.+ .+|||||||||+|||+|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus 114 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 188 (372)
T 1v43_A 114 PKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 188 (372)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 34566788999999999999888854 5799999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
++ |.|+|++||++ .++..++|++++|++|+++..|+++++.+
T Consensus 189 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 189 QKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 64 99999999995 78999999999999999999999998753
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.90 E-value=1.1e-23 Score=219.35 Aligned_cols=115 Identities=23% Similarity=0.465 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++.+++++++++.+||++..++.+ .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.++
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 344678999999999999888855 569999999999999999999999999999999999999999999999764
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|.|+|++||++ .++..++|++++|++|+++..|+++++.+
T Consensus 183 ~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 183 LGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999995 78999999999999999999999998753
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.90 E-value=2.1e-23 Score=207.85 Aligned_cols=111 Identities=31% Similarity=0.416 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD- 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~- 83 (546)
+.+++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~ 178 (253)
T 2nq2_C 104 HDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178 (253)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 44577899999999998888855 469999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
|+|||+++|++ .++.+++|++++|++|+ ++.|+++++
T Consensus 179 g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 179 NMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp CCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999995 77889999999999999 999988765
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=1.1e-23 Score=212.85 Aligned_cols=112 Identities=31% Similarity=0.430 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+.+++++++++.+||++..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|
T Consensus 137 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g 211 (279)
T 2ihy_A 137 EIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211 (279)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC
Confidence 345678999999999988888654 699999999999999999999999999999999999999999999998779
Q ss_pred CEE--EEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033 85 RTV--IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 85 ~tv--i~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
+|| |+++|++ .++.+++|++++|++|++++.|+++++
T Consensus 212 ~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 212 PTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp TTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred CEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999 9999995 678899999999999999999998765
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=2.8e-23 Score=206.54 Aligned_cols=111 Identities=22% Similarity=0.299 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHcCC-cccccccccCcccCC-CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033 5 EKRTLVERTIIEMGL-QDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL-~~~~~~~ig~~~~~~-lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+.+++++++++.+|| .+..|+.+ .. |||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 117 ~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 191 (250)
T 2d2e_A 117 EFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191 (250)
T ss_dssp HHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 345678899999999 57787755 45 999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEecChhH
Q 009033 83 DGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSA 121 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~~v~~G~~~~ 121 (546)
+|+|||+++|++ .++..+ +|++++|++|+++..|+++.
T Consensus 192 ~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 192 PNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp TTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred cCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 899999999996 567777 59999999999999999873
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.90 E-value=2.9e-23 Score=208.39 Aligned_cols=115 Identities=27% Similarity=0.359 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+.+++++++++.+||. +..++.++ .+|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++
T Consensus 138 ~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~ 213 (267)
T 2zu0_C 138 DFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG 213 (267)
T ss_dssp HHHHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 4456789999999996 56776442 149999999999999999999999999999999999999999999999877
Q ss_pred CCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEecChhHHHH
Q 009033 84 GRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|+|||+++|++ .++..+ +|++++|++|++++.|+++++..
T Consensus 214 g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 214 KRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp SCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred CCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence 99999999996 566665 89999999999999999887643
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.89 E-value=5.2e-23 Score=204.43 Aligned_cols=110 Identities=30% Similarity=0.436 Sum_probs=101.8
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC-------eEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR-------LLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~-------il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+++++++++.+||++..++.+ ..||||||||++||++|+.+|+ +|+|||||+|||+.++..+.+.|++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 467889999999998888755 4699999999999999999999 9999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
++++|+|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus 179 l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 179 LSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp HHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 987799999999995 678899999999999999999988765
No 26
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.89 E-value=5.5e-23 Score=213.43 Aligned_cols=110 Identities=28% Similarity=0.434 Sum_probs=102.7
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009033 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRT 86 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~t 86 (546)
++++++++.+||++..|+.+ .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+ .|.|
T Consensus 106 ~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 180 (348)
T 3d31_A 106 KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180 (348)
T ss_dssp HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 67899999999999988855 56999999999999999999999999999999999999999999999976 5999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus 181 ii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 181 VLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999995 7899999999999999999999998764
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.87 E-value=3.7e-22 Score=198.10 Aligned_cols=112 Identities=30% Similarity=0.473 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCCccccccc-------ccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 8 TLVERTIIEMGLQDCADTV-------IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~-------ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++++++++.+++.+..++. ++ ..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus 113 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 113 EKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp HHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4577888888887765543 22 245789999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+ +|+|||+++|++ ..+ +.+|++++|++|++++.|+++++.
T Consensus 192 ~-~g~tviivtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 192 C-KGRTVIIIAHRL-STV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp H-TTSEEEEECSSG-GGG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred c-CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 5 599999999996 455 459999999999999999988753
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=4.7e-22 Score=199.96 Aligned_cols=109 Identities=27% Similarity=0.317 Sum_probs=94.7
Q ss_pred HHHHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033 9 LVERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR 85 (546)
Q Consensus 9 ~v~~~l~~l--gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~ 85 (546)
.+++.++.+ ||++..++. +..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++++ +|+
T Consensus 134 ~~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~ 208 (271)
T 2ixe_A 134 GAHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASR 208 (271)
T ss_dssp TCHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTS
T ss_pred hHHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence 345677777 676666664 457999999999999999999999999999999999999999999999975 589
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|||+++|++ ..+. .+|++++|++|+++..|+++++.+
T Consensus 209 tviivtHd~-~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 209 TVLLITQQL-SLAE-RAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EEEEECSCH-HHHT-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEeCCH-HHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 999999995 5554 599999999999999999987643
No 29
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=5.1e-22 Score=198.82 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
+++++++++.+||+ +..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 105 ~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--- 176 (263)
T 2pjz_A 105 RDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--- 176 (263)
T ss_dssp HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---
T ss_pred HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---
Confidence 45688999999998 8887755 46999999999999999999999999999999999999999999999865
Q ss_pred EEEEEecCCchHHHhhcC-eEEEEeCCeEEEecChhHHH
Q 009033 86 TVIASIHQPSSEVFELFD-RLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D-~v~lL~~G~~v~~G~~~~~~ 123 (546)
|||+++|++ .++.+++| ++++|++|++++.|+++++.
T Consensus 177 tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 177 EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999996 67888999 99999999999999998764
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.87 E-value=1.1e-21 Score=200.15 Aligned_cols=113 Identities=32% Similarity=0.449 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 8 TLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.++++++..++.+. .++.+|. ....||||||||++|||+|+.+|+||+|||||+|||+.+...+++.|+++
T Consensus 158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 445666677666543 3555654 55679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+ ++|+|+++|++ +.+.. +|+|++|++|+++..|+++++.+
T Consensus 237 ~~-~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 237 CA-NRTTIVVAHRL-STVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HT-TSEEEEECCSH-HHHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred cC-CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 65 68999999996 55655 99999999999999999998754
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.86 E-value=4.6e-22 Score=196.91 Aligned_cols=113 Identities=27% Similarity=0.368 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 8 TLVERTIIEMGLQDCADTVIG------NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig------~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++++++.+++.+..++... +..+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 107 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 457888999999877665321 12457899999999999999999999999999999999999999999999997
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|+|||+++|++ ..+ ..+|++++|++|+++..|+++++.
T Consensus 187 -~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 187 -KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp -TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHHHHH
T ss_pred -CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 699999999996 455 569999999999999999988764
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.86 E-value=1e-21 Score=196.38 Aligned_cols=112 Identities=32% Similarity=0.475 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 8 TLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++.++++.++|.+. .|+.++. .+..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++
T Consensus 123 ~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 123 EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 345667777776543 3444443 56789999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ |+|||+++|++ ..+ +.+|++++|++|+++..|+++++.
T Consensus 202 ~~-~~tviivtH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 202 RK-NRTLIIIAHRL-STI-SSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp TT-TSEEEEECSSG-GGS-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred cC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 65 89999999996 445 569999999999999999988764
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=2.6e-21 Score=203.66 Aligned_cols=115 Identities=20% Similarity=0.273 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 7 RTLVERTIIEMGLQDCADTVIGN------WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~------~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++++++.++|.+..++..+. +....|||||||||+|||+|+.+|++|+|||||||||+.++.++.+.|+++
T Consensus 122 ~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 122 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 46688999999999887775431 122349999999999999999999999999999999999999999999987
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
. .|+|+|+++|++ +....+|+|++|++|+++..|+++++.+
T Consensus 202 ~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 202 F-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp T-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred h-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 5 479999999995 3557799999999999999999998753
No 34
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.83 E-value=1.9e-20 Score=207.62 Aligned_cols=114 Identities=31% Similarity=0.404 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033 7 RTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+++++++++..++.+. .||.+|+ ...+||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|++
T Consensus 447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 447 REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 3567888888888654 3566664 5678999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+.+ |+|+|+++|++ +.+ +.+|+|++|++|+++..|+++++.+
T Consensus 526 ~~~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 526 LQK-NRTSLVIAHRL-STI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHT-TSEEEEECSCG-GGT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhC-CCEEEEEeccH-HHH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 975 89999999997 444 5799999999999999999988654
No 35
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.83 E-value=1.7e-20 Score=207.98 Aligned_cols=113 Identities=30% Similarity=0.457 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033 7 RTLVERTIIEMGLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+++++++++.+|+++.. ||.+|+ ....||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 447 REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 45678888888887543 455664 4578999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+.+ |+|+|+++|++ +.+ +.+|++++|++|+++..|+++++.
T Consensus 526 ~~~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 526 LQK-NKTVLVIAHRL-STI-EQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HcC-CCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 965 89999999996 444 579999999999999999998764
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.83 E-value=1.5e-20 Score=184.52 Aligned_cols=110 Identities=23% Similarity=0.319 Sum_probs=89.5
Q ss_pred HHHHHHHcCCccccc-------ccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHH
Q 009033 10 VERTIIEMGLQDCAD-------TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLS 81 (546)
Q Consensus 10 v~~~l~~lgL~~~~~-------~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~~l~ 81 (546)
+++.++.+++.+..+ +.++. ....||||||||++||++|+.+|++|+|||||+|||+.++..+++. ++++.
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 178 (229)
T 2pze_A 100 YRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178 (229)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh
Confidence 344556666654332 23332 4578999999999999999999999999999999999999999997 46665
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|+|||+++|++ .++ ..+|++++|++|+++..|+++++.
T Consensus 179 -~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 179 -ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp -TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred -CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 489999999995 555 469999999999999999988754
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.83 E-value=2.1e-20 Score=207.76 Aligned_cols=113 Identities=29% Similarity=0.467 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033 7 RTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
+++++++++.+|+.+. .||.+|+ ...+||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|++
T Consensus 450 ~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 450 AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 4667888898887643 5677765 4578999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+.+ |+|+|+++|++ +.+ +.+|+|++|++|+++..|+++++.
T Consensus 529 ~~~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 529 LMD-GRTVLVIAHRL-STI-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHT-TSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECSCC--
T ss_pred Hhc-CCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 977 79999999996 455 569999999999999999988764
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=185.16 Aligned_cols=90 Identities=23% Similarity=0.379 Sum_probs=81.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009033 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---CLSRDGRTVIASIHQPSSEVFELFDRLYL 107 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~---~l~~~g~tvi~~~H~p~~~i~~~~D~v~l 107 (546)
.+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+ +++ +|+|||+++|++ ..+ ..+|++++
T Consensus 124 ~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~-~~~-~~~d~v~~ 200 (237)
T 2cbz_A 124 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSM-SYL-PQVDVIIV 200 (237)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCS-TTG-GGSSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecCh-HHH-HhCCEEEE
Confidence 567899999999999999999999999999999999999999999995 443 589999999997 444 57999999
Q ss_pred EeCCeEEEecChhHHH
Q 009033 108 LSGGKTVYFGETSAAF 123 (546)
Q Consensus 108 L~~G~~v~~G~~~~~~ 123 (546)
|++|+++..|+++++.
T Consensus 201 l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 201 MSGGKISEMGSYQELL 216 (237)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHh
Confidence 9999999999988764
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=5e-20 Score=204.36 Aligned_cols=112 Identities=25% Similarity=0.374 Sum_probs=94.9
Q ss_pred HHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 9 LVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 9 ~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
.+.+.++..++.+ -.|+.+|. ...+||||||||++|||+|+.+|+||+||||||+||+.+..++.+.|+++.
T Consensus 448 ~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 526 (587)
T 3qf4_A 448 EIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT 526 (587)
T ss_dssp HHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC
Confidence 3444555555433 35666664 567899999999999999999999999999999999999999999999985
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+|+|+|+++|++ +.+ ..+|+|++|++|+++..|+++++.+
T Consensus 527 -~~~tvi~itH~l-~~~-~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 527 -KGCTTFIITQKI-PTA-LLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp -TTCEEEEEESCH-HHH-TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred -CCCEEEEEecCh-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 589999999996 444 6899999999999999999998754
No 40
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2e-20 Score=207.50 Aligned_cols=111 Identities=21% Similarity=0.340 Sum_probs=101.8
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009033 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRT 86 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~t 86 (546)
+.++++++.++|.+.+|+.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|.|
T Consensus 446 ~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~t 520 (608)
T 3j16_B 446 QFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520 (608)
T ss_dssp HHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 45778999999998888855 56999999999999999999999999999999999999999999999974 6999
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC--CeEEEecChhHHHH
Q 009033 87 VIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 124 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~ 124 (546)
||+++|++ .++..++|||++|++ |+++..|+++++.+
T Consensus 521 viivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 521 AFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp EEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 99999994 789999999999986 99999999988764
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.81 E-value=7.9e-20 Score=202.49 Aligned_cols=113 Identities=29% Similarity=0.403 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++.+.++..++.+ -.||.+|+ ...+||||||||++|||+|+.+|++|+|||||||||+.+...+.+.|+++
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 44566666666543 34666764 55689999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+ |+|+|+++|++ +.+ +.+|+|++|++|+++..|+++++.+
T Consensus 524 ~~-~~t~i~itH~l-~~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 524 SK-DRTTLIVAHRL-STI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp TT-TSEEEEECSSG-GGT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cC-CCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 64 78999999997 444 5699999999999999999998754
No 42
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.81 E-value=8.2e-21 Score=184.37 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
+++++++++.+||++. ++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|
T Consensus 112 ~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 112 KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4678899999999877 6644 569999999999999999999999999999999999999999999999877899
Q ss_pred EEEEecCCchHHHhhcCeEEEEe
Q 009033 87 VIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
||+++|++ .++..++|+++++.
T Consensus 186 iiivtHd~-~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 186 VIISSREE-LSYCDVNENLHKYS 207 (214)
T ss_dssp EEEEESSC-CTTSSEEEEGGGGB
T ss_pred EEEEeCCH-HHHHHhCCEEEEeC
Confidence 99999996 67888888887553
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=4.9e-20 Score=204.91 Aligned_cols=112 Identities=22% Similarity=0.348 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 9 LVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 9 ~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+++++++..++.+ -.||.+|+ ....||||||||++|||+|+.+|++|+||||||+||+.+..++.+.|+++.
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 460 EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538 (598)
T ss_dssp HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence 3555566555543 33555553 446799999999999999999999999999999999999999999999996
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+|+|+|+++|+++ .+ +.+|+|++|++|+++..|+++++.+
T Consensus 539 -~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 539 -EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp -TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred -CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 5899999999974 45 4599999999999999999998754
No 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.81 E-value=9.1e-20 Score=202.37 Aligned_cols=112 Identities=26% Similarity=0.354 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~ 85 (546)
.++++++++.+||.+.+++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++ +|.
T Consensus 449 ~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 523 (607)
T 3bk7_A 449 NFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523 (607)
T ss_dssp HHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3567889999999988888654 6999999999999999999999999999999999999999999999974 699
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeC--CeEEEecChhHHHH
Q 009033 86 TVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 124 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~ 124 (546)
|||+++|++ .++..++|++++|++ |+++..|+++++.+
T Consensus 524 tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 524 TALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999994 789999999999986 88889999988765
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=6e-20 Score=201.51 Aligned_cols=112 Identities=27% Similarity=0.356 Sum_probs=101.2
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~ 85 (546)
+++++++++.+||.+..++.+ ..|||||||||.||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|.
T Consensus 379 ~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~ 453 (538)
T 1yqt_A 379 NFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 453 (538)
T ss_dssp HHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence 356788899999988887755 46999999999999999999999999999999999999999999999974 699
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeC--CeEEEecChhHHHH
Q 009033 86 TVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 124 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~ 124 (546)
|||+++|+ ..++..+||+|++|++ |+++..|+++++.+
T Consensus 454 tvi~vsHd-~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 454 TALVVEHD-VLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEEeCC-HHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999 4789999999999986 88889999988765
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.80 E-value=1.7e-19 Score=182.93 Aligned_cols=110 Identities=23% Similarity=0.319 Sum_probs=88.2
Q ss_pred HHHHHHHcCCccccc-------ccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHH
Q 009033 10 VERTIIEMGLQDCAD-------TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLS 81 (546)
Q Consensus 10 v~~~l~~lgL~~~~~-------~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~~l~ 81 (546)
+++.++.+++.+..+ +.++. ....||||||||++||++|+.+|++|+|||||+|||+.++..+++. ++++.
T Consensus 129 ~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~ 207 (290)
T 2bbs_A 129 YRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207 (290)
T ss_dssp HHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh
Confidence 345566666654322 22332 3568999999999999999999999999999999999999999997 45664
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|+|||+++|++ ..+ ..+|++++|++|+++..|+++++.
T Consensus 208 -~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 208 -ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp -TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred -CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 489999999996 555 569999999999999999998764
No 47
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.80 E-value=2.9e-19 Score=201.33 Aligned_cols=109 Identities=29% Similarity=0.380 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 8 TLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+++.+.++.+||.. ..++. +..|||||||||+||++|+.+| +||+|||||+|||+.++.++++.|++++++
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~ 595 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCchhhccCC-----chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 45667888899864 34554 4569999999999999999987 499999999999999999999999999988
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033 84 GRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 123 (546)
|.|||+++|++ ..+ +.+|+|++| ++|++++.|+++++.
T Consensus 596 g~tvi~vtHd~-~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 596 GDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp TCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999999996 444 679999999 899999999998863
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.79 E-value=1.9e-19 Score=197.30 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=97.4
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009033 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRT 86 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~t 86 (546)
..++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|.|
T Consensus 364 ~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~t 438 (538)
T 3ozx_A 364 WFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438 (538)
T ss_dssp HHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 45788899999998888855 46999999999999999999999999999999999999999999999986 6899
Q ss_pred EEEEecCCchHHHhhcCeEEEEeC--CeEEEecChhHHH
Q 009033 87 VIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAF 123 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~ 123 (546)
||+++|++ .++..+||||++|++ |.....|++.++.
T Consensus 439 vi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 439 TFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp EEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999994 789999999999986 6666677765543
No 49
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=3.8e-19 Score=200.34 Aligned_cols=104 Identities=28% Similarity=0.369 Sum_probs=93.6
Q ss_pred HHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 009033 13 TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 89 (546)
Q Consensus 13 ~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~--il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~ 89 (546)
+++.+||.+. .|+.+ ..|||||||||+||++|+++|+ +|+|||||+|||+.++.++++.|++++++|.|||+
T Consensus 185 ~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~ 259 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 259 (670)
T ss_dssp HHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4888999764 57755 4699999999999999999998 99999999999999999999999999988999999
Q ss_pred EecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033 90 SIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 123 (546)
Q Consensus 90 ~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 123 (546)
++|++ .. ...+|++++| ++|++++.|+++++.
T Consensus 260 vtHd~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 260 VEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp ECCCH-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred EeCCH-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 99995 44 4569999999 899999999998864
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.78 E-value=3.1e-19 Score=198.12 Aligned_cols=99 Identities=29% Similarity=0.450 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
++++++++.+||++..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.||
T Consensus 207 ~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv 281 (607)
T 3bk7_A 207 GKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281 (607)
T ss_dssp SCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 457889999999998888664 699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCe
Q 009033 88 IASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
|+++|++ .++..++|+|++|++|.
T Consensus 282 IivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 282 LVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp EEECSCH-HHHHHHCSEEEEEESCT
T ss_pred EEEecCh-HHHHhhCCEEEEECCCc
Confidence 9999994 78889999999998654
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.78 E-value=2.5e-19 Score=196.56 Aligned_cols=99 Identities=28% Similarity=0.437 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
++++++++.+||++..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.||
T Consensus 137 ~~~~~~l~~lgl~~~~~~~~-----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv 211 (538)
T 1yqt_A 137 GKLEEVVKALELENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSV 211 (538)
T ss_dssp SCHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCChhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 46788999999998888865 4699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCe
Q 009033 88 IASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
|+++|+ ..++.+++|+|++|++|.
T Consensus 212 i~vsHd-~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 212 LVVEHD-LAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp EEECSC-HHHHHHHCSEEEEEEEET
T ss_pred EEEeCC-HHHHHHhCCEEEEEcCcc
Confidence 999999 478999999999998653
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.7e-19 Score=196.45 Aligned_cols=103 Identities=28% Similarity=0.342 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
++++++++.+||++..|+.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.||
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tv 274 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEE
T ss_pred HHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 67889999999999988866 4699999999999999999999999999999999999999999999999889999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 009033 88 IASIHQPSSEVFELFDRLYLLSGGKTVYF 116 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~ 116 (546)
|+++|+ ..++..++|+|++|++|..+|.
T Consensus 275 i~vtHd-l~~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 275 ICVEHD-LSVLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp EEECSC-HHHHHHHCSEEEEEESCTTTEE
T ss_pred EEEeCC-HHHHHHhCCEEEEEeCCccccc
Confidence 999999 4889999999999998776553
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.77 E-value=3.6e-19 Score=195.07 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
++++++++.+||.+..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ |+||
T Consensus 117 ~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~ti 190 (538)
T 3ozx_A 117 GKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190 (538)
T ss_dssp SCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEE
T ss_pred HHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEE
Confidence 457889999999998888664 6999999999999999999999999999999999999999999999976 9999
Q ss_pred EEEecCCchHHHhhcCeEEEEeCCeEEE
Q 009033 88 IASIHQPSSEVFELFDRLYLLSGGKTVY 115 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~ 115 (546)
|+++|+. .++..++|+|++|++|..++
T Consensus 191 i~vsHdl-~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 191 IVVDHDL-IVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp EEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred EEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence 9999995 78999999999998765443
No 54
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=1.6e-18 Score=199.19 Aligned_cols=110 Identities=28% Similarity=0.344 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033 7 RTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
.+++.++|+.+||... .++ .+.+|||||||||.||++|+.+| +||+|||||+|||+.+..++++.|+++++
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~ 856 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD 856 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 3567789999999653 233 44579999999999999999875 79999999999999999999999999998
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033 83 DGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 123 (546)
+|.|||+++|++ +.+ ..+|+|++| ++|++++.|+++++.
T Consensus 857 ~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 857 RGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp TTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred cCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 899999999995 444 669999999 899999999999875
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.77 E-value=1.7e-18 Score=199.18 Aligned_cols=109 Identities=25% Similarity=0.382 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033 7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
+++++++++.+||. +..++.++ .||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++ .|.
T Consensus 525 ~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~ 596 (986)
T 2iw3_A 525 KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGI 596 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCS
T ss_pred HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCC
Confidence 46788999999994 67777664 5999999999999999999999999999999999999999999998 589
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHHHH
Q 009033 86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 124 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~~~ 124 (546)
|||+++|+ ..++.+++|++++|++|+++ +.|++++..+
T Consensus 597 tvIivSHd-l~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 597 TSITISHD-SVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEECSC-HHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EEEEEECC-HHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999 57889999999999999997 7899987654
No 56
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.76 E-value=2.6e-18 Score=157.15 Aligned_cols=83 Identities=28% Similarity=0.314 Sum_probs=74.2
Q ss_pred CcccCCCCHHHHHHHHHH------HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033 29 NWHLRGISGGERRRVSIA------LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 29 ~~~~~~lSgGer~Rvsia------~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~ 102 (546)
+..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|.|||+++|++ ++.+.+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 345678999999999886 899999999999999999999999999999999987899999999995 577899
Q ss_pred CeEEEE--eCCeE
Q 009033 103 DRLYLL--SGGKT 113 (546)
Q Consensus 103 D~v~lL--~~G~~ 113 (546)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.76 E-value=1.2e-18 Score=209.13 Aligned_cols=114 Identities=26% Similarity=0.415 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033 7 RTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++.+.++++..++. +-.||.||+ ....||||||||++|||+|+++|+||+||||||+||+.+...|.+.|++
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 35567777777664 446889986 3456999999999999999999999999999999999999999999988
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+. +|+|+|+++|.++. ...+|+|++|++|+++++|+++++.+
T Consensus 1263 ~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1263 AR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp TS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred Hc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 75 47999999999743 57799999999999999999998765
No 58
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=3e-18 Score=195.29 Aligned_cols=110 Identities=30% Similarity=0.340 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033 7 RTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~---P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
.+++.++++.+||... .++. +..|||||||||.||++|+.+ |+||+|||||+|||+.+..++++.|+++++
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~ 781 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD 781 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 3567899999999863 4554 457999999999999999996 799999999999999999999999999998
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033 83 DGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 123 (546)
+|.|||+++|++ .++ +.+|+|++| ++|++++.|+++++.
T Consensus 782 ~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 782 AGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 999999999995 666 889999999 799999999998753
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.75 E-value=3.8e-18 Score=196.04 Aligned_cols=108 Identities=27% Similarity=0.392 Sum_probs=95.4
Q ss_pred HHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033 10 VERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 10 v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~--il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
..+.+..+||... .|+.+ .+|||||||||.||++|+++|+ +|+|||||+|||+....++++.|++++++|.|
T Consensus 444 ~~~~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~T 518 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNT 518 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCE
T ss_pred HHHHHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCE
Confidence 4567888999764 56654 4699999999999999999887 99999999999999999999999999988999
Q ss_pred EEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHHH
Q 009033 87 VIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 124 (546)
Q Consensus 87 vi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~ 124 (546)
||+++|++ .. ...+|+|++| ++|++++.|+++++.+
T Consensus 519 vivVtHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 519 VIVVEHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EEEECCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEEEeCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99999995 44 4569999999 8999999999998653
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=5.5e-18 Score=193.77 Aligned_cols=109 Identities=29% Similarity=0.381 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 8 TLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+++.++++.+||.. ..++.+ ..|||||||||.||++|+.+| +||+|||||+|||+.++.++++.|++++++
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 897 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 34578999999986 566644 569999999999999999865 999999999999999999999999999989
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033 84 GRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 123 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 123 (546)
|.|||+++|++ .++ +.+|+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl-~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCH-HHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCH-HHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 99999999995 554 789999999 789999999998764
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.74 E-value=5.7e-18 Score=202.81 Aligned_cols=101 Identities=31% Similarity=0.497 Sum_probs=89.6
Q ss_pred cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009033 20 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 99 (546)
Q Consensus 20 ~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~ 99 (546)
.+-.||.+|+ ....||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++ .+|+|+|+++|++ +.+
T Consensus 1158 ~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l-~~i- 1233 (1284)
T 3g5u_A 1158 PDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRL-STI- 1233 (1284)
T ss_dssp TTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCT-TGG-
T ss_pred ccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCH-HHH-
Confidence 3456777875 45679999999999999999999999999999999999999999999885 4589999999997 455
Q ss_pred hhcCeEEEEeCCeEEEecChhHHHH
Q 009033 100 ELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 100 ~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
..+|||++|++|+++..|+++++.+
T Consensus 1234 ~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1234 QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HcCCEEEEEECCEEEEECCHHHHHh
Confidence 5699999999999999999998754
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=8.3e-18 Score=192.89 Aligned_cols=110 Identities=29% Similarity=0.371 Sum_probs=96.9
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 8 TLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
+++.++++.+||.. ..++.+ ..|||||||||.||++|+.+| +||+|||||+|||+.+..++++.|++++++
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 915 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK 915 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 34568899999976 556644 569999999999999999865 999999999999999999999999999988
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHHH
Q 009033 84 GRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~ 124 (546)
|.|||+++|++ .++ +.+|+|++| ++|++++.|+++++.+
T Consensus 916 G~TVIvisHdl-~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNL-DVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCH-HHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCH-HHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 99999999995 554 789999999 6899999999987643
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.73 E-value=5.7e-18 Score=193.59 Aligned_cols=111 Identities=29% Similarity=0.378 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 5 EKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+..+++ +.++.+||... .|+.++ +||||||||+.||++|..+| ++|+|||||+|||+.....+.+.|++|.
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr 553 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR 553 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 445555 35899999864 677554 69999999999999999985 9999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033 82 RDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 123 (546)
+.|.|||+++|++ .+ ...+|+|++| ++|++++.|+++++.
T Consensus 554 ~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 554 DLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp TTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred hCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 8999999999995 44 5679999999 799999999998753
No 64
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=7.1e-18 Score=202.43 Aligned_cols=114 Identities=28% Similarity=0.404 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCC-------cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033 7 RTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 7 ~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
++++.++++..++ .+-.||.||+. ...||||||||++|||+++.+|+||+||||||+||+.+...+.+.|++
T Consensus 521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~ 599 (1321)
T 4f4c_A 521 REEMVAACKMANAEKFIKTLPNGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccchhHHHcCCCCCccEecCC-CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 3456666666554 45578999974 456999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+.+ |+|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.+
T Consensus 600 ~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 600 AAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 864 799999999974 468899999999999999999998764
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.73 E-value=9.6e-18 Score=192.37 Aligned_cols=112 Identities=28% Similarity=0.370 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 5 EKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~--P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+..++++ .++.+||... .|+.+ .+||||||||+.||++|..+ |++|+|||||+|||+.....+.+.|++|.
T Consensus 497 ei~~Rl~-~L~~vGL~~l~l~r~~-----~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr 570 (993)
T 2ygr_A 497 EIRSRLG-FLLDVGLEYLSLSRAA-----ATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLR 570 (993)
T ss_dssp HHHHHHH-HHHHHTGGGSCTTCBG-----GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhCCCCccccCCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 3455553 4788999864 67655 46999999999999999999 58999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHHH
Q 009033 82 RDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~ 124 (546)
+.|.|||+++|++ .+ ...+|+|++| ++|++++.|+++++.+
T Consensus 571 ~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 571 DLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp HTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred HcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 8999999999995 44 5689999999 7999999999988653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.73 E-value=6.4e-18 Score=176.88 Aligned_cols=84 Identities=33% Similarity=0.467 Sum_probs=77.2
Q ss_pred cccCCCCHHHHHHHHHHHHHH------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 009033 30 WHLRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 103 (546)
Q Consensus 30 ~~~~~lSgGer~Rvsia~~l~------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D 103 (546)
..+.+|||||||||+||++|+ .+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++ . ..+.+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~-~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-E-FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-H-HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-H-HHHhCC
Confidence 356689999999999999999 79999999999999999999999999999998899999999996 4 478899
Q ss_pred eEEEEeCCeEEE
Q 009033 104 RLYLLSGGKTVY 115 (546)
Q Consensus 104 ~v~lL~~G~~v~ 115 (546)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 67
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.72 E-value=1.2e-17 Score=199.87 Aligned_cols=100 Identities=32% Similarity=0.475 Sum_probs=89.0
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 009033 21 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE 100 (546)
Q Consensus 21 ~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~ 100 (546)
+-.||.+|. ...+||||||||++|||+|+.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|++ +.+ .
T Consensus 514 ~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~i-~ 589 (1284)
T 3g5u_A 514 HQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRL-STV-R 589 (1284)
T ss_dssp TGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCH-HHH-T
T ss_pred ccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-H
Confidence 346777875 456799999999999999999999999999999999999999999998875 489999999995 555 4
Q ss_pred hcCeEEEEeCCeEEEecChhHHHH
Q 009033 101 LFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 101 ~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+|+|++|++|++++.|+++++.+
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHH
T ss_pred cCCEEEEEECCEEEEECCHHHHHh
Confidence 599999999999999999998754
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.71 E-value=1.8e-17 Score=188.97 Aligned_cols=111 Identities=24% Similarity=0.368 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 5 EKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+..++++ .++.+||.+. .++.+ ..|||||||||.||++|..+| .+|+|||||+|||+.....+.+.|++|.
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 4556666 6889999865 67655 469999999999999999999 5999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033 82 RDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 123 (546)
+.|.|||+++|++ . +.+.+|+|++| ++|++++.|+++++.
T Consensus 429 ~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 429 RGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8999999999995 4 66789999999 799999999988753
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.70 E-value=1.2e-17 Score=192.11 Aligned_cols=103 Identities=27% Similarity=0.427 Sum_probs=89.0
Q ss_pred HHHHHHHHHHcCCcc-c-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033 7 RTLVERTIIEMGLQD-C-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~-~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g 84 (546)
+++++++++.+||.+ . .++.+ .+|||||||||+||++|+.+|+||+|||||+|||+.+...+.+.|+++ |
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g 948 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---E 948 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S
T ss_pred HHHHHHHHHHcCCCchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---C
Confidence 356889999999974 3 46644 469999999999999999999999999999999999999999988765 5
Q ss_pred CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009033 85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118 (546)
Q Consensus 85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~ 118 (546)
.|||+++|++ .++.+++|++++|++|+++..|+
T Consensus 949 ~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 949 GGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp SEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 7999999994 77889999999999999988774
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.66 E-value=4.3e-16 Score=165.08 Aligned_cols=80 Identities=30% Similarity=0.427 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE----
Q 009033 35 ISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL---- 108 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL---- 108 (546)
+|||||||+.||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|.|||++||+| ++.+.+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999998 589999999996 456889999999
Q ss_pred eCCeEEEec
Q 009033 109 SGGKTVYFG 117 (546)
Q Consensus 109 ~~G~~v~~G 117 (546)
.+|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 999987653
No 71
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.55 E-value=3.4e-14 Score=133.15 Aligned_cols=90 Identities=20% Similarity=0.263 Sum_probs=73.2
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE
Q 009033 31 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 106 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~ 106 (546)
.+..||||||||++||++++. .|++++|||||+|||+.+...+.+.|++++++ .++|+++|++ .+.+.+|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEE
Confidence 356799999999999999975 46999999999999999999999999999764 6889999984 5678999999
Q ss_pred EEe--CCeE-EEecChhHHH
Q 009033 107 LLS--GGKT-VYFGETSAAF 123 (546)
Q Consensus 107 lL~--~G~~-v~~G~~~~~~ 123 (546)
.+. +|.. +...+.++..
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEETTEEEEEECCHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHH
Confidence 764 6643 3344444433
No 72
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.54 E-value=7.1e-15 Score=160.64 Aligned_cols=79 Identities=27% Similarity=0.375 Sum_probs=71.9
Q ss_pred ccCCC-CHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009033 31 HLRGI-SGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 107 (546)
Q Consensus 31 ~~~~l-SgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l 107 (546)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |.|||++||+| . +...+|++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~-~-~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA-Q-IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH-H-HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-H-HHHhCCEEEE
Confidence 35567 999999999999999999 99999999999999999999999999987 89999999996 3 5567999999
Q ss_pred EeCCe
Q 009033 108 LSGGK 112 (546)
Q Consensus 108 L~~G~ 112 (546)
|.+|.
T Consensus 470 ~~~~~ 474 (517)
T 4ad8_A 470 VEKQV 474 (517)
T ss_dssp EECCE
T ss_pred Eeccc
Confidence 96653
No 73
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.54 E-value=8.5e-15 Score=151.57 Aligned_cols=77 Identities=30% Similarity=0.332 Sum_probs=70.0
Q ss_pred ccCCCCHHHHH------HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 009033 31 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 104 (546)
Q Consensus 31 ~~~~lSgGer~------Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~ 104 (546)
.+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||+++|++ ++.+.+|+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 45679999999 56777888889999999999999999999999999999988889999999994 57899999
Q ss_pred EEEEe
Q 009033 105 LYLLS 109 (546)
Q Consensus 105 v~lL~ 109 (546)
++.|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.54 E-value=1.8e-14 Score=148.04 Aligned_cols=88 Identities=28% Similarity=0.258 Sum_probs=73.8
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE-
Q 009033 31 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL- 105 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v- 105 (546)
.+..||||||||++||++|+ .+|++|+|||||++||+.++..+.+.|++++ +|.|||+++|++ ++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 34579999999999999997 5789999999999999999999999999985 578999999995 478899987
Q ss_pred -EEEeCCeE-EEecChhH
Q 009033 106 -YLLSGGKT-VYFGETSA 121 (546)
Q Consensus 106 -~lL~~G~~-v~~G~~~~ 121 (546)
+++.+|.. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 77777754 44455554
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.52 E-value=1.1e-14 Score=151.69 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=77.2
Q ss_pred CcccC-CCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009033 29 NWHLR-GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 98 (546)
Q Consensus 29 ~~~~~-~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i 98 (546)
+..++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. . +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence 44556 79999999999999999 8999999999999999999999999999875 699999994 3 3
Q ss_pred HhhcCeEEEEeCCeEEEecChhHH
Q 009033 99 FELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 99 ~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.+|+++++++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998764
No 76
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.44 E-value=3.4e-13 Score=141.26 Aligned_cols=100 Identities=21% Similarity=0.279 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCCccc-------ccccccC----cccCCCCHHHHHHH------HHHHHHHhC-CCeEEEeCCCCCCCHH
Q 009033 7 RTLVERTIIEMGLQDC-------ADTVIGN----WHLRGISGGERRRV------SIALEILMR-PRLLFLDEPTSGLDSA 68 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~-------~~~~ig~----~~~~~lSgGer~Rv------sia~~l~~~-P~il~LDEPtsgLD~~ 68 (546)
.+.+++.++.+++.+. .+..+.+ ..+..+|||||||+ ++|++++.+ |++|+|||||+|||+.
T Consensus 242 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~ 321 (371)
T 3auy_A 242 QKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321 (371)
T ss_dssp HHHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHH
Confidence 3456677888877551 1111211 34567999999988 557888899 9999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033 69 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 69 ~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
.+..+.+.|+++.+ +.+||+++|+| ++...+|++++++
T Consensus 322 ~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d~~~~l~ 359 (371)
T 3auy_A 322 RRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCCEEEEEE
Confidence 99999999999854 46899999996 3678999999997
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.4e-14 Score=152.72 Aligned_cols=101 Identities=7% Similarity=0.082 Sum_probs=81.3
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHH--HHhCCCe----EEEeC-CCCCCCHHHHHHHHHHHHHHHh
Q 009033 10 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE--ILMRPRL----LFLDE-PTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 10 v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~--l~~~P~i----l~LDE-PtsgLD~~~~~~v~~~L~~l~~ 82 (546)
++++++.+||++..+ +.+|||||||||+||++ |+.+|++ |+||| ||+|||+. ...+.+.+++
T Consensus 218 ~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--- 286 (460)
T 2npi_A 218 KQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--- 286 (460)
T ss_dssp BCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---
T ss_pred HHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---
Confidence 344556667766554 34699999999999999 9999999 99999 99999999 4444444444
Q ss_pred CCCEEEEEecCCch-----HHHhhcCe-----EEEEe-CCeEEEecChhHH
Q 009033 83 DGRTVIASIHQPSS-----EVFELFDR-----LYLLS-GGKTVYFGETSAA 122 (546)
Q Consensus 83 ~g~tvi~~~H~p~~-----~i~~~~D~-----v~lL~-~G~~v~~G~~~~~ 122 (546)
.|.|+|+++|+... ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 37899999999641 66789999 99999 99999 9998765
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.37 E-value=5.4e-13 Score=125.50 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=65.8
Q ss_pred ccCCCCHHHHHHHHHHHH-----HHhCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec--CCchHHHhh
Q 009033 31 HLRGISGGERRRVSIALE-----ILMRPRLLFLDE--PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFEL 101 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~-----l~~~P~il~LDE--PtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H--~p~~~i~~~ 101 (546)
++..||||||||++||++ ++.+|++++||| ||++||+.....+.+.+++ .+.|+|+++| +....+.++
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHH
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHH
Confidence 455799999999999996 999999999999 9999999999999888876 5677888886 335778888
Q ss_pred cCeEEEEeCCeEEE
Q 009033 102 FDRLYLLSGGKTVY 115 (546)
Q Consensus 102 ~D~v~lL~~G~~v~ 115 (546)
+|+ .+|+++.
T Consensus 150 ~~r----~~~~i~~ 159 (178)
T 1ye8_A 150 RRL----PGAVLIE 159 (178)
T ss_dssp HTC----TTCEEEE
T ss_pred Hhc----CCcEEEE
Confidence 888 5566654
No 79
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.34 E-value=2.8e-13 Score=126.21 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009033 34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA----------------AAFFVTQTLRCLSRDGRTVIASIHQPSSE 97 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~----------------~~~~v~~~L~~l~~~g~tvi~~~H~p~~~ 97 (546)
..|||||||++||++++.+|++|+|||||+|||+. ...++.+.|++++++|.|+|+++|++ .+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~ 161 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EE 161 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HH
Confidence 35999999999999999999999999999999999 66899999999987899999999995 55
Q ss_pred HH
Q 009033 98 VF 99 (546)
Q Consensus 98 i~ 99 (546)
+.
T Consensus 162 ~~ 163 (171)
T 4gp7_A 162 VE 163 (171)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 80
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.33 E-value=2.1e-12 Score=137.74 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009033 33 RGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 108 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL 108 (546)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++ +....+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 57999999999999999999999999999977788999999994 567889999999
Q ss_pred e
Q 009033 109 S 109 (546)
Q Consensus 109 ~ 109 (546)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.14 E-value=2.4e-11 Score=132.90 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=74.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCCEEEEEecCCc---------h
Q 009033 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-----AAFFVTQTLRCLSRDGRTVIASIHQPS---------S 96 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~-----~~~~v~~~L~~l~~~g~tvi~~~H~p~---------~ 96 (546)
.+..|||||+||+.+|+++..+|++|++| ||+|||.. .+..+.++++.+++.|.|||+++|++. .
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~ 428 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS 428 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc
Confidence 45679999999999999999999999999 99999999 999999999999989999999999961 5
Q ss_pred HHHhhcCeEEEEeCCe
Q 009033 97 EVFELFDRLYLLSGGK 112 (546)
Q Consensus 97 ~i~~~~D~v~lL~~G~ 112 (546)
.+.+++|+|++|++|+
T Consensus 429 ~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 429 HISTITDTIILLQYVE 444 (525)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred ccceeeeEEEEEEEEE
Confidence 6778999999999887
No 82
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.12 E-value=2.2e-12 Score=124.33 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009033 38 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94 (546)
Q Consensus 38 Ger~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p 94 (546)
|||||++||++|+.+|++|+|||||+| ++..+.+.|+++ ++|+||| ++|++
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~ 158 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDI 158 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC-
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCH
Confidence 999999999999999999999999999 889999999999 6789999 99996
No 83
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.93 E-value=7.2e-10 Score=128.03 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=76.1
Q ss_pred ccCCCCHHHHHHHHHHHHH--HhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEE
Q 009033 31 HLRGISGGERRRVSIALEI--LMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLY 106 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l--~~~P~il~LDEPtsgLD~~~~~~v-~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~ 106 (546)
..+++|+|++++..+|+.+ +++|++++|||||+|||+.....+ ...++.+++ .|.|+|++||++ ++.+++|++.
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~ 795 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIP 795 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccc
Confidence 4568999999999999999 999999999999999999999888 677788886 599999999994 6778999999
Q ss_pred EEeCCeEEEecChhHH
Q 009033 107 LLSGGKTVYFGETSAA 122 (546)
Q Consensus 107 lL~~G~~v~~G~~~~~ 122 (546)
.+.+|++.+.++.+++
T Consensus 796 ~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 796 TVNNLHVTALTTEETL 811 (934)
T ss_dssp TEEEEEEEEEEETTEE
T ss_pred eeEeeEEEEEecCCcE
Confidence 9999999988876653
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.91 E-value=5.6e-11 Score=125.80 Aligned_cols=92 Identities=18% Similarity=0.143 Sum_probs=74.8
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHH--HHHHHHHHHHHHh----------CCCeEEEeCCCCCCCHHHHHHHHH
Q 009033 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGG--ERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQ 75 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgG--er~Rvsia~~l~~----------~P~il~LDEPtsgLD~~~~~~v~~ 75 (546)
.++++.++.++|.+.... + . +||| ||||+.||++|+. +|++++|||||+|||+.++.++++
T Consensus 135 ~~~~~~L~~~~L~~~~~~-~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~ 207 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFF-I-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 207 (413)
T ss_dssp CCHHHHHHHTTGGGCSEE-E-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCccCCe-E-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence 357888999998765322 1 2 8999 9999999999999 999999999999999999999999
Q ss_pred HHHHHH-----hCC----CEEEEEecCCch-HHHhhcCeEE
Q 009033 76 TLRCLS-----RDG----RTVIASIHQPSS-EVFELFDRLY 106 (546)
Q Consensus 76 ~L~~l~-----~~g----~tvi~~~H~p~~-~i~~~~D~v~ 106 (546)
.++++. +.| .+|++++|+... .+.+++|++.
T Consensus 208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999985 333 678899998532 2777777663
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.90 E-value=2.1e-09 Score=108.40 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=63.1
Q ss_pred CCCCHHH-HHHHHHHHHHHhCCCeEEEeCCCC---C---CCH-HHHHHHHHHHHHHHh-CCCEEEEEecCCc-h------
Q 009033 33 RGISGGE-RRRVSIALEILMRPRLLFLDEPTS---G---LDS-AAAFFVTQTLRCLSR-DGRTVIASIHQPS-S------ 96 (546)
Q Consensus 33 ~~lSgGe-r~Rvsia~~l~~~P~il~LDEPts---g---LD~-~~~~~v~~~L~~l~~-~g~tvi~~~H~p~-~------ 96 (546)
..+|.+| +||+. |+++..+|+++++||||+ + +|. ....++++.|+++++ .|+|||+++|+.. .
T Consensus 128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE 206 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence 3588998 67777 999999999999999999 5 565 677889999999986 4999999999951 3
Q ss_pred --------------HHHhhcCeEEEEeCCeE
Q 009033 97 --------------EVFELFDRLYLLSGGKT 113 (546)
Q Consensus 97 --------------~i~~~~D~v~lL~~G~~ 113 (546)
.+.+.+|+|++|.+|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 68889999999998874
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.65 E-value=2.1e-10 Score=109.78 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=54.9
Q ss_pred HHHhCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033 48 EILMRPRLLFLDEPTSGL----DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 48 ~l~~~P~il~LDEPtsgL----D~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
+|+.+|++++|||||+|+ |+..+.++.+.++++++ .|.|+|+++|+ ..++.+++|+|++|.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd-l~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR-LESACAELVSLLVGT 202 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS-HHHHHHHHHHHHC--
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC-HHHHHHHHHHHHHhc
Confidence 889999999999999998 78899999999999985 58999999999 489999999999984
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.63 E-value=3.5e-08 Score=115.32 Aligned_cols=84 Identities=14% Similarity=0.049 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033 34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA-FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~-~~v~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
.+|+|++ +++++++++++|++++|||||+|+|+... ..+...|+.++++ |.++|++||++ +.+...+|++.++ +|
T Consensus 851 tf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g 927 (1022)
T 2o8b_B 851 TFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LG 927 (1022)
T ss_dssp HHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EE
T ss_pred hhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cC
Confidence 4566655 59999999999999999999999999985 5578899999876 99999999995 6777789999887 48
Q ss_pred eEE--EecChh
Q 009033 112 KTV--YFGETS 120 (546)
Q Consensus 112 ~~v--~~G~~~ 120 (546)
++. +.|+++
T Consensus 928 ~~~~~~~~~~~ 938 (1022)
T 2o8b_B 928 HMACMVENECE 938 (1022)
T ss_dssp EEEEC------
T ss_pred eEEEEEecCcc
Confidence 877 456544
No 88
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.63 E-value=2.2e-08 Score=115.46 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=65.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEE-E
Q 009033 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYL-L 108 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~-~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~l-L 108 (546)
..++|+|++|++.|+++ +++|++++|||||+|||+.....+. ..++.+++ .|.|+|++||++ ++.+++|+.-- +
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v 809 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQV 809 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTE
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccce
Confidence 35689999999999988 8999999999999999999999998 77888875 699999999995 45677766431 3
Q ss_pred eCCeEEE
Q 009033 109 SGGKTVY 115 (546)
Q Consensus 109 ~~G~~v~ 115 (546)
.++++.+
T Consensus 810 ~n~~~~~ 816 (918)
T 3thx_B 810 GNYHMGF 816 (918)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4444443
No 89
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.61 E-value=4.9e-09 Score=107.93 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033 37 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 37 gGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
|||+||++||++|..+|++|++||||+ .++.+.|+.+...+.|+|+|+|.++ +.+.+||+++|.+|+.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 899999999999999999999999998 2456778877655568999999974 7788999999988763
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.58 E-value=8.6e-08 Score=91.86 Aligned_cols=79 Identities=14% Similarity=0.005 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCC--eEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hHHHhh
Q 009033 34 GISGGERRRVSIALEILMRPR--LLFLDEPTSGL--DSAAAFFVTQTLRCLSR-DGRTVIASIHQPS-------SEVFEL 101 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~~P~--il~LDEPtsgL--D~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~-------~~i~~~ 101 (546)
..|.+|.++...+.....+|+ ++++||||+++ |+....++++.|+++++ .|.|||+++|+.. ..+.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 358999988888777778999 99999999887 99999999999999975 6999999999962 348889
Q ss_pred cCeEEEEeCCe
Q 009033 102 FDRLYLLSGGK 112 (546)
Q Consensus 102 ~D~v~lL~~G~ 112 (546)
+|++++|...+
T Consensus 183 ~d~vi~l~~~~ 193 (235)
T 2w0m_A 183 ADGIIRFRRMI 193 (235)
T ss_dssp CSEEEEEEEEE
T ss_pred eeEEEEEEEEe
Confidence 99999998653
No 91
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.56 E-value=5.9e-10 Score=113.36 Aligned_cols=87 Identities=20% Similarity=0.157 Sum_probs=65.6
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 009033 10 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 89 (546)
Q Consensus 10 v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~ 89 (546)
+.+.++.+ |.+..| | ..|||||||| ||+|+.+|+||+ |++||+.+...+..
T Consensus 184 ~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------------- 234 (305)
T 2v9p_A 184 CWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------------- 234 (305)
T ss_dssp HHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------
T ss_pred HHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------
Confidence 44556653 433333 3 4699999999 999999999999 99999999888752
Q ss_pred EecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHH
Q 009033 90 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128 (546)
Q Consensus 90 ~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~ 128 (546)
.+|++. ..+.+|+| +|++|++++.|+++++...|..
T Consensus 235 ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 235 LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 178853 46889999 9999999999999988555544
No 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.53 E-value=1e-07 Score=95.16 Aligned_cols=77 Identities=12% Similarity=0.029 Sum_probs=61.3
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-C
Q 009033 10 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS--GLDSAAA---FFVTQTLRCLSR-D 83 (546)
Q Consensus 10 v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPts--gLD~~~~---~~v~~~L~~l~~-~ 83 (546)
++++++.+++.+..+. .+..+|+||++++ ++++.+|+++++||||+ ++|.... .++++.|+++++ .
T Consensus 99 ~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp HHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 3445677777666554 3456999998875 57888999999999999 9998544 888999999974 6
Q ss_pred CCEEEEEecCC
Q 009033 84 GRTVIASIHQP 94 (546)
Q Consensus 84 g~tvi~~~H~p 94 (546)
|+|||+++|+.
T Consensus 171 g~tvi~i~H~~ 181 (279)
T 1nlf_A 171 GCSIVFLHHAS 181 (279)
T ss_dssp CCEEEEEEEC-
T ss_pred CCEEEEEecCC
Confidence 99999999985
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.47 E-value=1e-07 Score=92.59 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeCCCCCCC-----HHHHHHHHHHHHHHHhCCCEEEEEecCCchHH---------Hhhc
Q 009033 37 GGERRRVSIALEILMRPRLLFLDEPTSGLD-----SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV---------FELF 102 (546)
Q Consensus 37 gGer~Rvsia~~l~~~P~il~LDEPtsgLD-----~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i---------~~~~ 102 (546)
.++..+...+..-..+|+++++||||++|| +..+..+.++++.+++.|+|||+++|++ .++ ..++
T Consensus 120 ~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~-~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP-DPQHGKLSRYGIEEFI 198 (251)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC-CCCcccccccChhhEe
Confidence 344444444444468999999999999998 6777779999999988899999999996 555 6788
Q ss_pred -CeEEEEe
Q 009033 103 -DRLYLLS 109 (546)
Q Consensus 103 -D~v~lL~ 109 (546)
|++++|+
T Consensus 199 aD~vi~l~ 206 (251)
T 2ehv_A 199 ARGVIVLD 206 (251)
T ss_dssp CSEEEEEE
T ss_pred eeEEEEEe
Confidence 9999996
No 94
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.30 E-value=1.2e-06 Score=83.42 Aligned_cols=78 Identities=15% Similarity=-0.003 Sum_probs=61.7
Q ss_pred CCCHHH--HHHHHHHHHHHhC-CCeEEEeCCCCCCCHH--------HHHHHHHHHHHHHh-CCCEEEEEecCCch-----
Q 009033 34 GISGGE--RRRVSIALEILMR-PRLLFLDEPTSGLDSA--------AAFFVTQTLRCLSR-DGRTVIASIHQPSS----- 96 (546)
Q Consensus 34 ~lSgGe--r~Rvsia~~l~~~-P~il~LDEPtsgLD~~--------~~~~v~~~L~~l~~-~g~tvi~~~H~p~~----- 96 (546)
..++++ ++++..+++++.+ |+++++||||+++|+. ...++++.|+++++ .|.|||+++|....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 355554 5678888899886 9999999999999973 33556777888876 48999999998541
Q ss_pred -------HHHhhcCeEEEEeCC
Q 009033 97 -------EVFELFDRLYLLSGG 111 (546)
Q Consensus 97 -------~i~~~~D~v~lL~~G 111 (546)
.+.+.+|.+++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 577899999999754
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.27 E-value=1.5e-07 Score=102.78 Aligned_cols=72 Identities=18% Similarity=0.076 Sum_probs=59.1
Q ss_pred HHHHHHHHH-HhCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhhcCeEE
Q 009033 41 RRVSIALEI-LMRPRLLFLDEPTS-----GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE--------VFELFDRLY 106 (546)
Q Consensus 41 ~Rvsia~~l-~~~P~il~LDEPts-----gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~--------i~~~~D~v~ 106 (546)
+.-.+..+| -.+|++++|||||+ +||+..+.++.+.++++++.|+|||+++|++... +..++|+|+
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi 205 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV 205 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence 344555566 36899999999998 5799999999999999988899999999997432 345699999
Q ss_pred EEeCCe
Q 009033 107 LLSGGK 112 (546)
Q Consensus 107 lL~~G~ 112 (546)
+|++|+
T Consensus 206 ~L~~~~ 211 (525)
T 1tf7_A 206 ILRNVL 211 (525)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999854
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.26 E-value=1.9e-07 Score=94.79 Aligned_cols=72 Identities=21% Similarity=0.204 Sum_probs=56.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHh
Q 009033 32 LRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS--------SEVFE 100 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~--il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~--------~~i~~ 100 (546)
+.+|| |||+.||++++.+|+ +|+|| ||+|||+.+. ++++.+ .|.|+|++||... +.+..
T Consensus 202 ~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~ 271 (302)
T 3b9q_A 202 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEE 271 (302)
T ss_dssp HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHH
Confidence 34588 999999999999999 99999 9999998855 355654 5899999999421 23445
Q ss_pred hcCeEEEEeCCeE
Q 009033 101 LFDRLYLLSGGKT 113 (546)
Q Consensus 101 ~~D~v~lL~~G~~ 113 (546)
..+.|..+..|+.
T Consensus 272 ~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 272 LGIPVKFIGVGEA 284 (302)
T ss_dssp HCCCEEEEECSSS
T ss_pred HCCCEEEEeCCCC
Confidence 5678888888875
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.23 E-value=7.9e-07 Score=85.15 Aligned_cols=103 Identities=18% Similarity=0.132 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCcccccccccC-cccCCCCHHHH-HHHHHHHHHHh-------CCCeEEEeCCCCCCCHH-------H--
Q 009033 8 TLVERTIIEMGLQDCADTVIGN-WHLRGISGGER-RRVSIALEILM-------RPRLLFLDEPTSGLDSA-------A-- 69 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~-~~~~~lSgGer-~Rvsia~~l~~-------~P~il~LDEPtsgLD~~-------~-- 69 (546)
+++..+.+..++..- +...+ ......+++++ +.+..+.+++. +|+++++||||+++|+. .
T Consensus 74 ~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r 151 (231)
T 4a74_A 74 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 151 (231)
T ss_dssp HHHHHHHHHTTSCHH--HHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH
T ss_pred HHHHHHHHHcCCCHH--HHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH
Confidence 345666777776421 11111 01223455554 44677777777 99999999999999983 1
Q ss_pred ---HHHHHHHHHHHHh-CCCEEEEEecCCc---hHHHhhcCeEEEEeCCe
Q 009033 70 ---AFFVTQTLRCLSR-DGRTVIASIHQPS---SEVFELFDRLYLLSGGK 112 (546)
Q Consensus 70 ---~~~v~~~L~~l~~-~g~tvi~~~H~p~---~~i~~~~D~v~lL~~G~ 112 (546)
..++++.|+++++ .|+|||+++|... ..+.+.+|+++.|++|+
T Consensus 152 ~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 152 QQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 2378888888875 5999999999531 23788899999998754
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.22 E-value=5.1e-07 Score=102.44 Aligned_cols=66 Identities=27% Similarity=0.182 Sum_probs=55.0
Q ss_pred cCCCCHHHHHHHHHHHHH--HhCCCeEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033 32 LRGISGGERRRVSIALEI--LMRPRLLFLDEP---TSGLDSAAA-FFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l--~~~P~il~LDEP---tsgLD~~~~-~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~ 102 (546)
..++|+|+++++.+++++ +++|++++|||| |++||..+. ..+++.|++ .|.|+|++||++ +..+++
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 457899999999999999 999999999999 999998875 578887776 589999999994 444554
No 99
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.19 E-value=9.1e-07 Score=91.60 Aligned_cols=82 Identities=18% Similarity=0.086 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHH-------hCCCeEEEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCc
Q 009033 36 SGGERRRVSIALEIL-------MRPRLLFLDEPTSGLDSAA------------AFFVTQTLRCLSR-DGRTVIASIHQPS 95 (546)
Q Consensus 36 SgGer~Rvsia~~l~-------~~P~il~LDEPtsgLD~~~------------~~~v~~~L~~l~~-~g~tvi~~~H~p~ 95 (546)
|+++++++.++++++ .+|+++++||||+++|+.. ..++++.|+++++ .|+|||+++|..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~- 286 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ- 286 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-
Confidence 688999999999999 6899999999999999852 4667777888876 589999999985
Q ss_pred hHHHhhcCeEEEEeCCeEEEecC
Q 009033 96 SEVFELFDRLYLLSGGKTVYFGE 118 (546)
Q Consensus 96 ~~i~~~~D~v~lL~~G~~v~~G~ 118 (546)
.+....++......+|+++.++.
T Consensus 287 ~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 287 ARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ---------------CCCCCTTC
T ss_pred cccccccCCccccCCcceEeecC
Confidence 45555566667777787776654
No 100
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.15 E-value=4e-07 Score=94.55 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=56.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC--------chHHHh
Q 009033 32 LRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP--------SSEVFE 100 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~--il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p--------~~~i~~ 100 (546)
+.+|| |||+.||++++.+|+ +|+|| ||+|||+.+. ++++.+ .|.|+|++||.. .+.+..
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~ 328 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEE 328 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHH
Confidence 34588 999999999999999 99999 9999998865 345554 589999999942 133445
Q ss_pred hcCeEEEEeCCeE
Q 009033 101 LFDRLYLLSGGKT 113 (546)
Q Consensus 101 ~~D~v~lL~~G~~ 113 (546)
..+.|..+..|+.
T Consensus 329 ~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 329 LGIPVKFIGVGEA 341 (359)
T ss_dssp HCCCEEEEECSSS
T ss_pred hCCCEEEEeCCCC
Confidence 5678888888764
No 101
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.14 E-value=8.2e-07 Score=101.31 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033 34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v-~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
.+|+|++ ++..+...+++|++++||||++|+|+.....+ ...++.+++ .|.++|++||++ ++.+++|++..+.+|
T Consensus 669 tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEE
T ss_pred hhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEE
Confidence 4566655 44445567899999999999999999888776 788899987 599999999995 456789988778888
Q ss_pred eEEEecC
Q 009033 112 KTVYFGE 118 (546)
Q Consensus 112 ~~v~~G~ 118 (546)
++.+...
T Consensus 746 ~~~~~~~ 752 (800)
T 1wb9_A 746 HLDALEH 752 (800)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 8776543
No 102
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.09 E-value=1.3e-07 Score=94.62 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
..||||||||+.+||+++. +++|||||.|||+.. .+.++.+++. .+||+++|.
T Consensus 97 ~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K 149 (270)
T 3sop_A 97 EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAK 149 (270)
T ss_dssp HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETT
T ss_pred HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEec
Confidence 4699999999999999875 999999999999987 5666777666 899999987
No 103
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.07 E-value=2.7e-07 Score=95.56 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=68.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhhcCe
Q 009033 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDR 104 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~--~g~-----tvi~~~H~p~~~i~~~~D~ 104 (546)
+..+|+|| ||+++| +.+|++ |+|||+....++.+.++++.+ +|. ||++++|+.. ..++|+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 45699999 899999 688877 999999999999999999985 577 9999999974 577999
Q ss_pred EEEEeCCeEEEecChhHH
Q 009033 105 LYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 105 v~lL~~G~~v~~G~~~~~ 122 (546)
+..+.+|+++.+|+.++.
T Consensus 236 v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHCSEEEEBCHHHHTT
T ss_pred eEEeeCcEEEEeCCHHHc
Confidence 999999999999987653
No 104
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.06 E-value=2.5e-07 Score=98.66 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=69.1
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCchHHHhhc
Q 009033 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---D-GR-----TVIASIHQPSSEVFELF 102 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~---~-g~-----tvi~~~H~p~~~i~~~~ 102 (546)
+..+|+|| ||++|| +.+|++ |+|||+....++.+.++++.+ + |. ||++++|+.. ...+
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia 322 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA 322 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence 45689999 999999 889988 999999999999999999976 3 74 9999999975 5789
Q ss_pred CeEEEEeCCeEEEecChhHH
Q 009033 103 DRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 103 D~v~lL~~G~~v~~G~~~~~ 122 (546)
|++++|.+|+++..|++++.
T Consensus 323 d~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 323 DSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHHHSSEEEEECHHHHHT
T ss_pred ceEEEEeCcEEEEeCCHHHc
Confidence 99999999999999987653
No 105
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.98 E-value=3.5e-08 Score=95.28 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHH-----HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033 34 GISGGERRRVSI-----ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 34 ~lSgGer~Rvsi-----a~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
.+|||||||++| +++++.+|++++|||||+++|..+...+.+.|+++.+
T Consensus 122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 589999999999 8899999999999999999999999999998887754
No 106
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.94 E-value=4.5e-06 Score=82.87 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033 42 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 42 Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
|++||++|..+|+++++|||| |+.+...++ +. ++.|.+|++++|++. +...+|+++.|..
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 988866544 33 457899999999963 6788999988754
No 107
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.94 E-value=2.4e-07 Score=94.54 Aligned_cols=55 Identities=13% Similarity=0.063 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q 009033 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 67 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~ 67 (546)
.+.+.+.++.++ .+..++.+ ..+||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 456778888887 55555544 46999999999999999999999999999999987
No 108
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.86 E-value=1.3e-05 Score=75.51 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHH-HHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033 9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86 (546)
Q Consensus 9 ~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~R-vsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t 86 (546)
.+.+.++..++... .+++ +...+|+||||| +..+++++.+|+++++|||||++|..+..++++.|.++.++|.|
T Consensus 128 ~~~~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 128 QMIEWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 34455666666432 1222 334589999999 89999999999999999999999999999999999998876644
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.73 E-value=1e-06 Score=83.19 Aligned_cols=79 Identities=13% Similarity=0.055 Sum_probs=55.6
Q ss_pred cCCCCHHHHHHHH-HHH---HHHhCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCEEEE---E-ecCCchHHHhh
Q 009033 32 LRGISGGERRRVS-IAL---EILMRPRLLFLDE--PTSGLDSAAAFFVTQTLRCLSRDGRTVIA---S-IHQPSSEVFEL 101 (546)
Q Consensus 32 ~~~lSgGer~Rvs-ia~---~l~~~P~il~LDE--PtsgLD~~~~~~v~~~L~~l~~~g~tvi~---~-~H~p~~~i~~~ 101 (546)
...+|+|||+++. +++ +++.+|++|++|| ||..+|... ++.|+++.+...++|+ + +|+.+ ..+
T Consensus 81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~~l~~~l~~~~~~ilgti~vsh~~~---~~~ 153 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQAVRQTLSTPGTIILGTIPVPKGKP---LAL 153 (189)
T ss_dssp EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HHHHHHHHHCSSCCEEEECCCCCSSC---CTT
T ss_pred EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HHHHHHHHhCCCcEEEEEeecCCCCc---hHH
Confidence 3468999998884 343 4789999999999 898888865 4455555444445553 2 28752 357
Q ss_pred cCeEEEEeCCeEEEec
Q 009033 102 FDRLYLLSGGKTVYFG 117 (546)
Q Consensus 102 ~D~v~lL~~G~~v~~G 117 (546)
.|+|..+.+|+++...
T Consensus 154 vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 154 VEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHHTTCCSEEEECC
T ss_pred HHHHeecCCcEEEEeC
Confidence 7888888888887643
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.71 E-value=3.7e-05 Score=71.05 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=44.5
Q ss_pred HHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009033 48 EILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 97 (546)
Q Consensus 48 ~l~~~P~il~LDEPts-gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~ 97 (546)
..+.+|++|+||||++ ++|+..+..+.+.+....++|+++|+|+|.+..+
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 4466999999999995 9999999999999999888899999999998654
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.66 E-value=9.4e-08 Score=90.99 Aligned_cols=83 Identities=13% Similarity=0.049 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHH----HHHHHHHHHHHhCCCeEEEeCCCCC-------CCHHHHHHHHH
Q 009033 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGE----RRRVSIALEILMRPRLLFLDEPTSG-------LDSAAAFFVTQ 75 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGe----r~Rvsia~~l~~~P~il~LDEPtsg-------LD~~~~~~v~~ 75 (546)
.+++.+.++.+++.+..+.. ...+|+|| +||++++++++.+|.++++||||++ ||+....++.+
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 35567788888887655553 34588986 4688999999999999999999999 99999999999
Q ss_pred HHHHHH-hCCCEEEEEecCC
Q 009033 76 TLRCLS-RDGRTVIASIHQP 94 (546)
Q Consensus 76 ~L~~l~-~~g~tvi~~~H~p 94 (546)
.+++.. +.|+|++.++|+.
T Consensus 142 ~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 142 RLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 998864 5799999999974
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.65 E-value=1.4e-05 Score=82.95 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033 44 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 44 sia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
+||++|..+|++|++|||| |..+ .+.+.+++..|.||++|+|+++ .+ ..+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 9999999999999999999 6444 4555556778999999999964 44 889999988654
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.49 E-value=0.00018 Score=69.20 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=50.8
Q ss_pred CCCHHHHHH-HHHHHHHH--hCCCeEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCchH
Q 009033 34 GISGGERRR-VSIALEIL--MRPRLLFLDEPTSGLDSA-------A-----AFFVTQTLRCLSR-DGRTVIASIHQPSSE 97 (546)
Q Consensus 34 ~lSgGer~R-vsia~~l~--~~P~il~LDEPtsgLD~~-------~-----~~~v~~~L~~l~~-~g~tvi~~~H~p~~~ 97 (546)
..++.+... +.-..+++ .+|+++++|||++.+|+. + ..++++.|+++++ .|.|||+++|.. .+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~ 176 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQ 176 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ec
Confidence 356665433 33344444 489999999999999985 3 4566777777776 499999999964 33
Q ss_pred H-------------------HhhcCeEEEEeCCe
Q 009033 98 V-------------------FELFDRLYLLSGGK 112 (546)
Q Consensus 98 i-------------------~~~~D~v~lL~~G~ 112 (546)
. .+++|.+++|++|+
T Consensus 177 ~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 177 VDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp --------------------CCTTCEEEEEEECS
T ss_pred CCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 2 23799999998653
No 114
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.38 E-value=7e-06 Score=83.12 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=46.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 009033 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPS 95 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPts-gLD~~~~~~v~~~L~~l~~~-g~tvi~~~H~p~ 95 (546)
+.+++|||||||+.+|++++ ++++||||+ |||+... +.+++++++ +.++|++.||..
T Consensus 110 ~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 110 YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 45679999999998888775 999999998 5999873 566677653 789999999953
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.33 E-value=9e-07 Score=82.70 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHH------HHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC-CchHHHhhcCeEEEE
Q 009033 36 SGGERRRVSIAL------EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ-PSSEVFELFDRLYLL 108 (546)
Q Consensus 36 SgGer~Rvsia~------~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~-p~~~i~~~~D~v~lL 108 (546)
|+|+++++.++. +++.+|+...+|| |+|+..... .+.++.+.+.+.++|.++|. + +++.+.+|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--
Confidence 788888888888 8999999888884 899988888 88888887678899999998 6 67899999999
Q ss_pred eCCeEEEecChhHH
Q 009033 109 SGGKTVYFGETSAA 122 (546)
Q Consensus 109 ~~G~~v~~G~~~~~ 122 (546)
++|+++..|+++.+
T Consensus 169 ~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 169 TNPRFIFCMAGDPL 182 (189)
T ss_dssp HCGGGSCC------
T ss_pred hCCcEEEeecCCch
Confidence 99999999988643
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.20 E-value=0.00015 Score=65.56 Aligned_cols=50 Identities=8% Similarity=0.208 Sum_probs=40.9
Q ss_pred HHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCchHH
Q 009033 48 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT-VIASIHQPSSEV 98 (546)
Q Consensus 48 ~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t-vi~~~H~p~~~i 98 (546)
+++.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+..++
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHc
Confidence 4567899999999998 6655588899999999888888 999999765543
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.02 E-value=4.8e-05 Score=74.24 Aligned_cols=73 Identities=4% Similarity=0.066 Sum_probs=49.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcCeEEEEeC
Q 009033 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSG 110 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~-~~D~v~lL~~ 110 (546)
+..+|+||+||+.+ ++++.+|+++++|||....|.. +.++ .+.+|++++|+. ..+.+ +.+++ .+
T Consensus 114 ~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~~-~~~~r~~~r~~---~~ 178 (245)
T 2jeo_A 114 VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDSD-VRLSRRVLRDV---RR 178 (245)
T ss_dssp ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECCHH-HHHHHHHHHHT---C-
T ss_pred cccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECCHH-HHHHHHHHHHH---Hc
Confidence 35699999999988 5778899999999998888763 2222 378999999973 34433 34434 55
Q ss_pred CeEEEecChhHHHH
Q 009033 111 GKTVYFGETSAAFE 124 (546)
Q Consensus 111 G~~v~~G~~~~~~~ 124 (546)
|+ +.+++.+
T Consensus 179 G~-----~~e~~~~ 187 (245)
T 2jeo_A 179 GR-----DLEQILT 187 (245)
T ss_dssp -------CHHHHHH
T ss_pred CC-----CHHHHHH
Confidence 64 4555554
No 118
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.90 E-value=0.00092 Score=68.17 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=41.9
Q ss_pred HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 009033 49 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 105 (546)
Q Consensus 49 l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v 105 (546)
+..+|+++++|||++ ||..++..+.+.|.+..+ +.++|+++|+|..-...+-+|+
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK-NIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT-TEEEEEEESCSCSSCHHHHTTS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC-CCEEEEEeCCHHHHHHHHHhhc
Confidence 577999999999999 999999999999988753 6899999999754333333443
No 119
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.90 E-value=0.0032 Score=67.04 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHHH--hCCCeEEEeCCCCCCCH--------HHHHHHHHHHHHHHh-CCCEEEEEec---------
Q 009033 33 RGISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDS--------AAAFFVTQTLRCLSR-DGRTVIASIH--------- 92 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~--~~P~il~LDEPtsgLD~--------~~~~~v~~~L~~l~~-~g~tvi~~~H--------- 92 (546)
.++|++|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++ .|++||+++|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~ 371 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ 371 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 368999986 5667776 68999999999997742 344678888999986 5899999999
Q ss_pred C--Cc-------hHHHhhcCeEEEEeCCeE
Q 009033 93 Q--PS-------SEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 93 ~--p~-------~~i~~~~D~v~lL~~G~~ 113 (546)
+ |. ..+.+.+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 42 157788999999987763
No 120
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.74 E-value=0.0017 Score=68.21 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=52.0
Q ss_pred HHHHHHHHHHH--hCCCeEEEeCCCCCCCHHHH------------HHHHHHHHHHHh-CCCEEEEEecCCc---------
Q 009033 40 RRRVSIALEIL--MRPRLLFLDEPTSGLDSAAA------------FFVTQTLRCLSR-DGRTVIASIHQPS--------- 95 (546)
Q Consensus 40 r~Rvsia~~l~--~~P~il~LDEPtsgLD~~~~------------~~v~~~L~~l~~-~g~tvi~~~H~p~--------- 95 (546)
.+.+..+..++ .+|+++++||||+.+|+... .++++.|+++++ .|.|||+++|...
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence 34444444443 46999999999999996433 678888999986 4999999999821
Q ss_pred ---------hHHHhhcCeEEEEeCCe
Q 009033 96 ---------SEVFELFDRLYLLSGGK 112 (546)
Q Consensus 96 ---------~~i~~~~D~v~lL~~G~ 112 (546)
..+.+.+|.++.|++|+
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---------CHHHHHCSEEEEEEECS
T ss_pred CCCccCCchhHHHHhcceEEEEEecC
Confidence 23467789999998764
No 121
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.27 E-value=0.0033 Score=69.58 Aligned_cols=75 Identities=11% Similarity=0.161 Sum_probs=56.9
Q ss_pred hCCCeEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCCch---H---HHhhc-----CeEEEEeCC
Q 009033 51 MRPRLLFLDEP------TSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQPSS---E---VFELF-----DRLYLLSGG 111 (546)
Q Consensus 51 ~~P~il~LDEP------tsgLD~~~~~~v~~~L~~l~~--~g~tvi~~~H~p~~---~---i~~~~-----D~v~lL~~G 111 (546)
.+|+++++||| |+|||+..+.++.++++++.+ .+.++++++|+... + +.... ..|.++.++
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence 46999999999 999999999999999999754 36788888998531 2 22222 457899999
Q ss_pred eEEEecChhHHHHH
Q 009033 112 KTVYFGETSAAFEF 125 (546)
Q Consensus 112 ~~v~~G~~~~~~~~ 125 (546)
..+..|+.+++.+.
T Consensus 225 Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 225 DLVDKGTEDKVVDV 238 (608)
T ss_dssp GGSSSSSTTCCCCC
T ss_pred hhcCcccHHHHHHH
Confidence 99988877655443
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.25 E-value=0.0016 Score=67.60 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033 42 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 42 Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
+.+|+.+|..+|+++++|||| |..+... .++. +..|.+|+.|+|.. ++...+||++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 579999999999999999999 7666443 3443 35689999999995 3778888887664
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.18 E-value=0.013 Score=56.02 Aligned_cols=60 Identities=20% Similarity=0.115 Sum_probs=46.5
Q ss_pred hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchH-------HHhhcCeEEEEeC
Q 009033 51 MRPRLLFLDEPTSGL--DSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE-------VFELFDRLYLLSG 110 (546)
Q Consensus 51 ~~P~il~LDEPtsgL--D~~~~~~v~~~L~~l~-~~g~tvi~~~H~p~~~-------i~~~~D~v~lL~~ 110 (546)
.+|+++++|||++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655667777777765 4689999999985431 5678899999974
No 124
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.11 E-value=0.0008 Score=69.58 Aligned_cols=73 Identities=12% Similarity=-0.140 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHH-hCCCeEEEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhc
Q 009033 34 GISGGERRRVSIALEIL-MRPRLLFLDE---PT------SGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~-~~P~il~LDE---Pt------sgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~ 102 (546)
.+|+|+++|..+++.+. .+|++++||| |+ .++|...+..+.+.|+++.+ .|.+|++++|. ++..+++
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~--~~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP--SYLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS--SHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC--CHHHHHH
Confidence 46777788888887764 5999999999 65 58999999999999999865 48899998874 3555666
Q ss_pred CeEEEE
Q 009033 103 DRLYLL 108 (546)
Q Consensus 103 D~v~lL 108 (546)
|++.++
T Consensus 336 ~~i~~i 341 (365)
T 1lw7_A 336 QVKAVI 341 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 125
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.09 E-value=0.00067 Score=68.94 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 009033 34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 103 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D 103 (546)
++|+||+||+..++.++.+|+++ ||| .++.+.|+++. .+.||++++|.+. ++..++|
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 58999999999888888999988 998 77888888875 5789999999864 4444444
No 126
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.07 E-value=0.00067 Score=71.66 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHhCCC---eEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 35 ISGGERRRVSIALEILMRPR---LLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~---il~LDEPt-sgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
++.++++|+.||++++.+|+ +|++|||| .|||+... +.++.+.. +.+||+++|.
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence 45667788889999999999 99999999 69999873 44555554 6888888886
No 127
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.02 E-value=0.0015 Score=66.02 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009033 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP 94 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p 94 (546)
++..++||+.||++++.+|+.++| .||+.+..++++.++++.+ .|.|+|++||..
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 456679999999999999994443 4555555567777788775 489999999984
No 128
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.80 E-value=0.026 Score=58.00 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH---H-hCCCEEEEEecCCch-----
Q 009033 41 RRVSIALEILMR--PRLLFLDEPTSGL----------DS---AAAFFVTQTLRCL---S-RDGRTVIASIHQPSS----- 96 (546)
Q Consensus 41 ~Rvsia~~l~~~--P~il~LDEPtsgL----------D~---~~~~~v~~~L~~l---~-~~g~tvi~~~H~p~~----- 96 (546)
+-+.++++++.+ |+++++||+++.+ |+ ..+..+.+.+++| + +.|+|||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 346678888765 9999999999998 33 2333445555555 3 468999999996421
Q ss_pred ----------HHHhhcCeEEEEeCCeEEEecC
Q 009033 97 ----------EVFELFDRLYLLSGGKTVYFGE 118 (546)
Q Consensus 97 ----------~i~~~~D~v~lL~~G~~v~~G~ 118 (546)
.+.+.+|.++.++.++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2567899999998887665554
No 129
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.56 E-value=0.003 Score=66.64 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=52.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhhcCeE
Q 009033 31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRL 105 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l-~~~g~tvi~~~H~p~~~i~~~~D~v 105 (546)
....+|+|++|++.++++|+.+|.++++ +++|...+ ..++.+++. .+.|.+++.++..-...+.++++.+
T Consensus 249 ~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 249 PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 3456999999999999999999999999 99999877 555555554 4457777665544345666666554
No 130
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.46 E-value=0.0007 Score=68.00 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=31.6
Q ss_pred ccCCCCHHHHHHHHHH--HHHHhCCCeEEEeCCCCCCCHHH
Q 009033 31 HLRGISGGERRRVSIA--LEILMRPRLLFLDEPTSGLDSAA 69 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia--~~l~~~P~il~LDEPtsgLD~~~ 69 (546)
+.+.+||||+||+.+| +++ +|+|||+|||++++|+..
T Consensus 131 y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 131 YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred CccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 3467999999999987 454 899999999999999853
No 131
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.46 E-value=0.00027 Score=68.79 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=39.1
Q ss_pred ccCCCCHHHHHHHHHHHHH-HhCCCeEEEe----CCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 31 HLRGISGGERRRVSIALEI-LMRPRLLFLD----EPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l-~~~P~il~LD----EPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
.+..+|| |+ +++ +.+|++++|| |||+|||..+...+.+.++++.++
T Consensus 149 ~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 149 WIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp EEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred CCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 3445787 55 566 8999999999 999999999999999999998765
No 132
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.39 E-value=0.0078 Score=68.50 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=62.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchHHHhhcCeEEEEe
Q 009033 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIAS-IHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPts-gLD~~~~~~v~~~L~~l~~~g~tvi~~-~H~p~~~i~~~~D~v~lL~ 109 (546)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.....+.++|++| ||++ .++.+++++.-++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~vi~ 266 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPLLA 266 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCEEE
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCccc
Confidence 34468999999999999999999999999996 999888777777776665556788886 8874 67777887544433
Q ss_pred -CCe
Q 009033 110 -GGK 112 (546)
Q Consensus 110 -~G~ 112 (546)
.|+
T Consensus 267 v~gr 270 (773)
T 2xau_A 267 VPGR 270 (773)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 443
No 133
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.31 E-value=0.00056 Score=63.26 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=47.1
Q ss_pred HHHHHHHH-cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeE-------EEeCCCCC---CCHHHHHHHHHHH
Q 009033 9 LVERTIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-------FLDEPTSG---LDSAAAFFVTQTL 77 (546)
Q Consensus 9 ~v~~~l~~-lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il-------~LDEPtsg---LD~~~~~~v~~~L 77 (546)
.+++.++. +. -.|+.+|. +||||||||++|||+++.+|++. .-|.|..+ +|......+.+.+
T Consensus 84 ~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i 156 (171)
T 2f1r_A 84 DLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFI 156 (171)
T ss_dssp CHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHH
T ss_pred CHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHH
Confidence 34556665 43 36888875 59999999999999999999873 22454322 3445566777777
Q ss_pred HHHHhCCC
Q 009033 78 RCLSRDGR 85 (546)
Q Consensus 78 ~~l~~~g~ 85 (546)
.+...+|.
T Consensus 157 ~~~~~~~~ 164 (171)
T 2f1r_A 157 LSLLREGG 164 (171)
T ss_dssp HHHHTC--
T ss_pred HHHHhccC
Confidence 66666553
No 134
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.72 E-value=0.044 Score=58.71 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCC
Q 009033 37 GGERRRVSIALEILMRPRLLFLDEP----------TSGLDSAAAFFVTQTLRCLS----RDGRTVIASIHQP 94 (546)
Q Consensus 37 gGer~Rvsia~~l~~~P~il~LDEP----------tsgLD~~~~~~v~~~L~~l~----~~g~tvi~~~H~p 94 (546)
|+++.|..++.+....|.|||+||+ ++|.|......+.++|..+. +.+..||.++|+|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6778888999999999999999999 34677766666666666663 3578999999997
No 135
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.52 E-value=0.0023 Score=69.11 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHH----------HHHHHHHhCCC-eEEEeCCCCCCCHHHHHHH
Q 009033 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV----------SIALEILMRPR-LLFLDEPTSGLDSAAAFFV 73 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rv----------sia~~l~~~P~-il~LDEPtsgLD~~~~~~v 73 (546)
+.++|. +.++..|+.+..+-.- .....+||||+||. .+++++...|. ++++||++.-+|.. ...+
T Consensus 242 EmerR~-~ll~~~Gv~~i~~yn~--~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~ 317 (512)
T 2ius_A 242 EMERRY-KLMSALGVRNLAGYNE--KIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKV 317 (512)
T ss_dssp HHHHHH-HHHHHTTCSSHHHHHH--HHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHH
T ss_pred HHHHHH-HHHHHcCCccHHHHHH--HHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHH
Confidence 334443 6778888876543210 01124688887652 24555667897 78999999988843 3456
Q ss_pred HHHHHHHHh----CCCEEEEEecCCch
Q 009033 74 TQTLRCLSR----DGRTVIASIHQPSS 96 (546)
Q Consensus 74 ~~~L~~l~~----~g~tvi~~~H~p~~ 96 (546)
.+.+.++++ .|.++|+++|.|+.
T Consensus 318 ~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 318 EELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred HHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 666666654 37799999999973
No 136
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.91 E-value=0.065 Score=51.20 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=48.4
Q ss_pred HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHH
Q 009033 46 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 125 (546)
Q Consensus 46 a~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~ 125 (546)
..+++..+++++|| ||+.++.++.+.+. +|.||++++|++ .++.+ |+ +..| .|+++++...
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHH
Confidence 45677789999999 99999999999876 589999999995 55544 43 6667 5677776654
Q ss_pred HH
Q 009033 126 FA 127 (546)
Q Consensus 126 f~ 127 (546)
+.
T Consensus 162 l~ 163 (219)
T 1s96_A 162 MA 163 (219)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 137
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.73 E-value=0.0003 Score=73.70 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=59.2
Q ss_pred CC--CeEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhhcCeEE-EEeCC-eEEEecChhH
Q 009033 52 RP--RLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLY-LLSGG-KTVYFGETSA 121 (546)
Q Consensus 52 ~P--~il~LDEPtsgLD~~~~~~v~~~L~~l-~~~g~tvi~~~H~p~~~i~~~~D~v~-lL~~G-~~v~~G~~~~ 121 (546)
+| +++++|||+.++|+.......+.++++ ++.|.|++ +|. ..++.+++|++. +|.+| ++++.|+.++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~-~~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKA-KKEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHH-HHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-HHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 78 999999999999999999999999998 77787864 998 578999999999 99999 9998887543
No 138
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.33 E-value=0.25 Score=49.65 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCC----------------CCC--------------------H-HHHHHHHHHH
Q 009033 35 ISGGERRRVSIALEILMRPRLLFLDEPTS----------------GLD--------------------S-AAAFFVTQTL 77 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPts----------------gLD--------------------~-~~~~~v~~~L 77 (546)
||++|++|+..|...+.++++.+.|+|.. |.+ . ....++.+.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~L 213 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 213 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHH
Confidence 78888888877776666555555555421 111 0 2234566778
Q ss_pred HHHHh-CCCEEEEEecCCc------------------hHHHhhcCeEEEEe
Q 009033 78 RCLSR-DGRTVIASIHQPS------------------SEVFELFDRLYLLS 109 (546)
Q Consensus 78 ~~l~~-~g~tvi~~~H~p~------------------~~i~~~~D~v~lL~ 109 (546)
+.+++ .|++||+++|-.. ..+.+.+|-|+.|.
T Consensus 214 k~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~ 264 (315)
T 3bh0_A 214 KKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLY 264 (315)
T ss_dssp HHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEE
T ss_pred HHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEe
Confidence 88876 4889999888531 23667788888875
No 139
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.26 E-value=0.096 Score=53.51 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
+.++...+.......+++++..+ | .||++|++|+..|...+.++++.+.|+|... ..++...++++.
T Consensus 85 s~~ql~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~ 151 (338)
T 4a1f_A 85 SAEQLALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLK 151 (338)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHH
Confidence 44444444444444445544432 2 4999999999999999999999999998654 336677777776
Q ss_pred h-C-CCEEEEE
Q 009033 82 R-D-GRTVIAS 90 (546)
Q Consensus 82 ~-~-g~tvi~~ 90 (546)
+ . |..+|++
T Consensus 152 ~~~gg~~lIVI 162 (338)
T 4a1f_A 152 SQHKELGIAFI 162 (338)
T ss_dssp HHCTTEEEEEE
T ss_pred HhcCCCCEEEE
Confidence 5 3 5666655
No 140
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.80 E-value=0.023 Score=60.28 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE-EeCCeEEEecChh
Q 009033 52 RPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVYFGETS 120 (546)
Q Consensus 52 ~P~il~LDEPtsgLD~-~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l-L~~G~~v~~G~~~ 120 (546)
+|++|++||+..-.+. .++..+.+.+..+.+.|+.||+++|.|..++..+.+++.- +..|.++..++++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999887664 6778888999998888999999999976554333344332 4567777776654
No 141
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.97 E-value=0.021 Score=52.46 Aligned_cols=54 Identities=13% Similarity=-0.068 Sum_probs=40.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
+..+|+|++||+.++|++..+|+++ +|+.....+.+.++.+...+..+|.++++
T Consensus 107 ~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~ 160 (191)
T 1zp6_A 107 LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGK 160 (191)
T ss_dssp EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTC
T ss_pred eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCC
Confidence 3469999999999999999999876 68888888777777665433345555443
No 142
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.02 E-value=0.34 Score=51.81 Aligned_cols=71 Identities=23% Similarity=0.355 Sum_probs=50.4
Q ss_pred cCCCCHHHHHHHHHHH--HHHh-----------C---C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009033 32 LRGISGGERRRVSIAL--EILM-----------R---P-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~--~l~~-----------~---P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p 94 (546)
..+.||||+|-.-+|+ +++. + + .++++||. +-+|...+...++.++++- .=+|+++ |
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lg---lQliiat--P 450 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLD---MQLLIAA--P 450 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTT---CEEEEEE--S
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcC---CEEEEEC--c
Confidence 4679999999754443 3332 1 2 57999999 9999999999999999874 4444444 3
Q ss_pred chHHHhhcCeEEEEe
Q 009033 95 SSEVFELFDRLYLLS 109 (546)
Q Consensus 95 ~~~i~~~~D~v~lL~ 109 (546)
. .+....|.++.+.
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 2 4556677777664
No 143
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.08 E-value=0.23 Score=46.60 Aligned_cols=73 Identities=21% Similarity=0.099 Sum_probs=54.3
Q ss_pred HHHHHHHHHHH--hCCCeEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033 40 RRRVSIALEIL--MRPRLLFLDEPTS--GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 40 r~Rvsia~~l~--~~P~il~LDEPts--gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
++.+.-++..+ .+.++++|||.+. .++-....++++.|++- ..+..||+|...+.+++.+.+|-|--|..-+-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~VTem~~vkH 182 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTVSELRPVKH 182 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEEEECCCSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcceeeecceeC
Confidence 44566677777 5579999999976 23333444566666532 24689999999999999999999999986654
No 144
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.90 E-value=0.6 Score=46.46 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 009033 36 SGGERRRVSIALEILMRPRLLFLDEP-TSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 36 SgGer~Rvsia~~l~~~P~il~LDEP-tsgLD~~~~~~v~~~L~~l~ 81 (546)
...+.+|..++.+...+++++++||| ++|+|.....++.+..+.+.
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 45566788999888899999999999 99999988888877776653
No 145
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.68 E-value=0.15 Score=50.90 Aligned_cols=70 Identities=7% Similarity=0.169 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCCEEEE-EecCCchHHHhhcCeEEEEeCCeEEEe
Q 009033 42 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS---RDGRTVIA-SIHQPSSEVFELFDRLYLLSGGKTVYF 116 (546)
Q Consensus 42 Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~---~~g~tvi~-~~H~p~~~i~~~~D~v~lL~~G~~v~~ 116 (546)
+..++ .+.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++ ++|. ..++.+.+|++..+..|.++..
T Consensus 174 ~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~-~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 174 QQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK-YEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC-HHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC-HHHHHHHHHHHhcCCCCEEEEe
Confidence 44444 45999999999 99999876655444443333 23345555 4787 4678888887766666777653
No 146
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.54 E-value=0.31 Score=49.01 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=35.2
Q ss_pred CCCHHHHHHH---HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 34 GISGGERRRV---SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 34 ~lSgGer~Rv---sia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
..|||+.+++ ++++++..+|+++++|||.. ......+++.|+++.
T Consensus 165 ~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 165 HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 3689999999 89999999999999999974 344455666666554
No 147
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.48 E-value=0.52 Score=48.07 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCC
Q 009033 33 RGISGGERRRVSIALEILMRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI--HQP 94 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P~il~LD-EPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~--H~p 94 (546)
..+|+||+|++. +.....++-++++| +|++|+|.....++++.++.... +.++|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 457899998876 55555677788999 99999999998888888877654 67788887 774
No 148
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.42 E-value=0.24 Score=50.69 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHH---Hh--CCCeEEEeCCC
Q 009033 34 GISGGERRRVSIALEI---LM--RPRLLFLDEPT 62 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l---~~--~P~il~LDEPt 62 (546)
.+|+||+||..++++| .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3899999999999999 77 89999999997
No 149
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.37 E-value=0.1 Score=53.71 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033 36 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 36 SgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~ 113 (546)
+++...|..|+.++..+|+.+++||++. .++.+.|+.+.....|++.++|..+ ....+||+..+.+|..
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~~ 304 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQNR 304 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTST
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhccc
Confidence 4666789999999999999999999986 3455667777655568899999953 6788999988877643
No 150
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.56 E-value=2 Score=41.97 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---hHH
Q 009033 36 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA----------AAFFVTQTLRCLSR----DGRTVIASIHQPS---SEV 98 (546)
Q Consensus 36 SgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~----------~~~~v~~~L~~l~~----~g~tvi~~~H~p~---~~i 98 (546)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 567788888888888899999999998776532 22334444444432 2456788888752 334
Q ss_pred HhhcCeEEE
Q 009033 99 FELFDRLYL 107 (546)
Q Consensus 99 ~~~~D~v~l 107 (546)
...||+.+.
T Consensus 177 ~~R~~~~i~ 185 (297)
T 3b9p_A 177 LRRFTKRVY 185 (297)
T ss_dssp HHHCCEEEE
T ss_pred HhhCCeEEE
Confidence 445665543
No 151
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.38 E-value=1.2 Score=42.55 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=43.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 009033 52 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 109 (546)
Q Consensus 52 ~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H---------~p~~~i~~~~D~v~lL~ 109 (546)
+|+++++||--. |+. ++++.++.+++.|.+||++-| .++.++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 355667777777999999999 77789999999999875
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.54 E-value=0.02 Score=53.59 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033 48 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 109 (546)
Q Consensus 48 ~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 109 (546)
+++.+|++++|||+|+++|..+...+.+.|++..++ +...|.+ ..+|.|++++
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 566777777888889999999999999988887653 1234521 5699987765
No 153
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=81.81 E-value=1.6 Score=45.92 Aligned_cols=58 Identities=3% Similarity=0.046 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 009033 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQ 93 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~-l~~~g~tvi~~~H~ 93 (546)
.+++-.+ +.|+..|..+++++++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 3677666 7899999889999999999999999999999999986 88889998887754
No 154
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.81 E-value=0.0016 Score=64.32 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=49.7
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCe--EEEeCCCCCCCHHHH--------HHHHHHHHHHHhCCCEEEEE
Q 009033 21 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRL--LFLDEPTSGLDSAAA--------FFVTQTLRCLSRDGRTVIAS 90 (546)
Q Consensus 21 ~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~i--l~LDEPtsgLD~~~~--------~~v~~~L~~l~~~g~tvi~~ 90 (546)
...++.|+....+ +|+| ||+.|++.++.+|++ +++||.|+.+|...+ ..+.+...++..+|+|.+..
T Consensus 160 ~~l~~vi~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~ 236 (261)
T 2eyu_A 160 FILQGIISQRLLP-KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLED 236 (261)
T ss_dssp HHEEEEEEEEEEC-CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHH
T ss_pred HHhhEEEEEEeEe-cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHH
Confidence 3455566553333 6888 899999999999999 999999999998743 23444444455568877666
Q ss_pred ecC
Q 009033 91 IHQ 93 (546)
Q Consensus 91 ~H~ 93 (546)
.|.
T Consensus 237 a~r 239 (261)
T 2eyu_A 237 AME 239 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=81.36 E-value=7.2 Score=40.78 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=44.8
Q ss_pred HHHHHH--hCCCeEEEeCCCCCCCH----------HHHHHHHHHHHHHHh-CCCEEEEEecC-----------Cc-----
Q 009033 45 IALEIL--MRPRLLFLDEPTSGLDS----------AAAFFVTQTLRCLSR-DGRTVIASIHQ-----------PS----- 95 (546)
Q Consensus 45 ia~~l~--~~P~il~LDEPtsgLD~----------~~~~~v~~~L~~l~~-~g~tvi~~~H~-----------p~----- 95 (546)
.++.+. .+|+++++|..+.=.++ ....++.+.|+.+++ .|++||+++|- |.
T Consensus 301 ~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr 380 (444)
T 2q6t_A 301 RARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLR 380 (444)
T ss_dssp HHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGG
T ss_pred HHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhc
Confidence 344444 47999999998753322 123567788888887 58999999883 21
Q ss_pred --hHHHhhcCeEEEEeC
Q 009033 96 --SEVFELFDRLYLLSG 110 (546)
Q Consensus 96 --~~i~~~~D~v~lL~~ 110 (546)
..+.+.+|.|+.|..
T Consensus 381 ~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 381 ESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GGCTTGGGCSEEEEEEE
T ss_pred chhHHHHhCCEEEEEec
Confidence 135677898888853
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=81.29 E-value=0.35 Score=44.22 Aligned_cols=39 Identities=26% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 40 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 40 r~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
.+...+|++++.+|+++++| ||++|..+..++++.|.+.
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999 9999999999999988753
No 157
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=80.37 E-value=0.77 Score=47.14 Aligned_cols=42 Identities=10% Similarity=-0.137 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 49 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l 49 (546)
++++..+.+.++++.+|+.+..|.. +.++| ||+||++||+++
T Consensus 287 ~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 287 EPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA 328 (358)
T ss_dssp CHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence 3455667778889999998877774 45699 999999999753
No 158
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=78.04 E-value=0.0048 Score=64.10 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=50.8
Q ss_pred cccccccCcccCCCCHHHHHHHHHHHHHHhCCCe--EEEeCCCCCCCHHH---H-----HHHHHHHHHHHhCCCEEEEEe
Q 009033 22 CADTVIGNWHLRGISGGERRRVSIALEILMRPRL--LFLDEPTSGLDSAA---A-----FFVTQTLRCLSRDGRTVIASI 91 (546)
Q Consensus 22 ~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~i--l~LDEPtsgLD~~~---~-----~~v~~~L~~l~~~g~tvi~~~ 91 (546)
..+..|+....+ .|+| ||++|+++++.+|.+ +++||.|+.||... . ..+.+...++..+|+|.+...
T Consensus 272 ~l~~vv~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a 348 (372)
T 2ewv_A 272 ILQGIISQRLLP-KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDA 348 (372)
T ss_dssp SCCEEEEEEEEE-CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTT
T ss_pred hhhEEEEEEeEe-cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHH
Confidence 334455442222 5788 889999999999999 99999999999752 1 234444455556788888888
Q ss_pred cCCch
Q 009033 92 HQPSS 96 (546)
Q Consensus 92 H~p~~ 96 (546)
|..+.
T Consensus 349 ~r~~~ 353 (372)
T 2ewv_A 349 MEASP 353 (372)
T ss_dssp TSSCS
T ss_pred HHHcC
Confidence 87643
No 159
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=77.91 E-value=6.3 Score=39.53 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=35.4
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCC
Q 009033 51 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQP 94 (546)
Q Consensus 51 ~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~---~g~tvi~~~H~p 94 (546)
.+|.+|++||+..- |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888777665 578999999986
No 160
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=74.24 E-value=5.3 Score=38.34 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=46.0
Q ss_pred HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------CchHHHhhcCeEEEEe
Q 009033 49 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ---------PSSEVFELFDRLYLLS 109 (546)
Q Consensus 49 l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~---------p~~~i~~~~D~v~lL~ 109 (546)
.+.+.+++++||----.| +.+.++.++..|..||++-++ ++.++.+++|.|.-|.
T Consensus 87 ~~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 87 EALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HHTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred HhccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 346789999999877644 666666677789999999999 9999999999999874
No 161
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=72.85 E-value=0.031 Score=52.54 Aligned_cols=72 Identities=21% Similarity=0.125 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHH-HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033 33 RGISGGERRRVSIA-LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 33 ~~lSgGer~Rvsia-~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
.+.|+||+||++++ +.++.++.++++|||.. ..+...--.++.+.+.....+.+...|. +..|
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g 173 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHG 173 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTT
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcC
Confidence 35799999999987 77777887777888741 1122222356666665433355556552 3345
Q ss_pred eEEEecChhHHHHH
Q 009033 112 KTVYFGETSAAFEF 125 (546)
Q Consensus 112 ~~v~~G~~~~~~~~ 125 (546)
. +.+++.+.
T Consensus 174 ~-----t~~~~~~~ 182 (208)
T 3c8u_A 174 L-----NHDAAVAR 182 (208)
T ss_dssp C-----CHHHHHHH
T ss_pred C-----CHHHHHHH
Confidence 4 45555543
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=72.50 E-value=2 Score=44.03 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHH----HHH-HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA----LEI-LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia----~~l-~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
.+.+.++++.+++.+..--.|+| ++.-+|+|+++|+.++ +++ ..+|++ +|+|++|..+..++.+.|.++.
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 34467788888876654333444 3445788888888887 444 333444 8999999999999999998865
Q ss_pred h
Q 009033 82 R 82 (546)
Q Consensus 82 ~ 82 (546)
.
T Consensus 353 ~ 353 (364)
T 2qtf_A 353 T 353 (364)
T ss_dssp H
T ss_pred c
Confidence 4
No 163
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=71.70 E-value=15 Score=37.36 Aligned_cols=76 Identities=14% Similarity=0.021 Sum_probs=46.1
Q ss_pred HHHHHHHHH--hCCCeEEEeCCCCCCCHH-------------HHHHHHHHHHHH---Hh-CCCEEEEEecCCch------
Q 009033 42 RVSIALEIL--MRPRLLFLDEPTSGLDSA-------------AAFFVTQTLRCL---SR-DGRTVIASIHQPSS------ 96 (546)
Q Consensus 42 Rvsia~~l~--~~P~il~LDEPtsgLD~~-------------~~~~v~~~L~~l---~~-~g~tvi~~~H~p~~------ 96 (546)
-..+++.++ .+++++++|+++.-.... .+..+.+.+++| ++ .|++||++.|-...
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 445666664 579999999999866311 112334444444 43 58999988775221
Q ss_pred ---------HHHhhcCeEEEEeCCeEEEec
Q 009033 97 ---------EVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 97 ---------~i~~~~D~v~lL~~G~~v~~G 117 (546)
.+.+.+|-++.++..+..-.|
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 245668888888766654333
No 164
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=71.60 E-value=3 Score=41.41 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=36.2
Q ss_pred HhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 009033 50 LMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 96 (546)
Q Consensus 50 ~~~P~il~LDEPts-gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~ 96 (546)
..+|++|++||+-. ..|......+...+..+...|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 45799999999865 334477888888998888777778888776544
No 165
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=71.57 E-value=4.2 Score=40.64 Aligned_cols=54 Identities=20% Similarity=0.100 Sum_probs=38.4
Q ss_pred HHHHHHHHHHH---hCCCeEEEeCCCCCCCH--------HH----HHHHHHHHHHHHh-CCCEEEEEecC
Q 009033 40 RRRVSIALEIL---MRPRLLFLDEPTSGLDS--------AA----AFFVTQTLRCLSR-DGRTVIASIHQ 93 (546)
Q Consensus 40 r~Rvsia~~l~---~~P~il~LDEPtsgLD~--------~~----~~~v~~~L~~l~~-~g~tvi~~~H~ 93 (546)
.+.+..+..++ .+|+++++|+.++-.+. .. ..++++.|+++++ .|.+||++.|.
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 35677777777 57999999999975432 11 3456666777765 58899998775
No 166
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=71.46 E-value=2.4 Score=38.77 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=30.6
Q ss_pred HHhCCCeEEEeCCCC-CCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhh
Q 009033 49 ILMRPRLLFLDEPTS-GLDSAAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFEL 101 (546)
Q Consensus 49 l~~~P~il~LDEPts-gLD~~~~~~v~-~~L~~l~~~g~tvi~~~H~p~~~i~~~ 101 (546)
.+.++++|++||+-. .++......++ ..+......+..+|++++.+..++...
T Consensus 112 ~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 112 YIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred HhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 345788999999932 23332233344 355554455667777777765665543
No 167
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=68.73 E-value=0.0075 Score=65.31 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCchHHHhhc
Q 009033 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA--SIHQPSSEVFELF 102 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~--~~H~p~~~i~~~~ 102 (546)
..+|||||||..++. + | |+|||+.+...+++.+.++.++|.|+++ ++|+ ..++.+.+
T Consensus 399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~-l~ei~~~~ 457 (511)
T 2oap_1 399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKK-LEKMADFL 457 (511)
T ss_dssp EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTH-HHHHHHHH
T ss_pred EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHH-HHHHHHHc
Confidence 357999998876641 2 7 9999998887777777777777888875 8888 46666555
No 168
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=68.70 E-value=8.1 Score=35.65 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=42.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 009033 52 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 109 (546)
Q Consensus 52 ~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H---------~p~~~i~~~~D~v~lL~ 109 (546)
+.+++++||--- +|+. .++.++.++..|.+||++-+ .++.++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6643 36678888878999999999 67789999999997764
No 169
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=67.13 E-value=6.9 Score=39.47 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=37.3
Q ss_pred HHHHHHHHHH----hCCCeEEEeCCCCCCCHH------------HHHHHHHHHHHHHh-CCCEEEEEecC
Q 009033 41 RRVSIALEIL----MRPRLLFLDEPTSGLDSA------------AAFFVTQTLRCLSR-DGRTVIASIHQ 93 (546)
Q Consensus 41 ~Rvsia~~l~----~~P~il~LDEPtsgLD~~------------~~~~v~~~L~~l~~-~g~tvi~~~H~ 93 (546)
+.+..+..++ .+++++++|+.++-.+.. ...++++.|+++++ .|.+||++.|.
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 4455566666 568999999999865431 13556666777775 58898888885
No 170
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=67.03 E-value=14 Score=38.77 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=38.6
Q ss_pred CCC--eEEEeCCCC---CC---C-HHHHHHHHHHHHHHHh-CCCEEEEEecCCch------------------HHHhhcC
Q 009033 52 RPR--LLFLDEPTS---GL---D-SAAAFFVTQTLRCLSR-DGRTVIASIHQPSS------------------EVFELFD 103 (546)
Q Consensus 52 ~P~--il~LDEPts---gL---D-~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~------------------~i~~~~D 103 (546)
+|+ ++++|--+. +- + .....++.+.|+.+++ .|++||+++|-... .+.+.+|
T Consensus 308 ~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD 387 (444)
T 3bgw_A 308 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDAD 387 (444)
T ss_dssp CSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCS
T ss_pred CCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCC
Confidence 678 888886532 11 1 1233467778888887 48999999984211 3667788
Q ss_pred eEEEEeC
Q 009033 104 RLYLLSG 110 (546)
Q Consensus 104 ~v~lL~~ 110 (546)
-|+.|..
T Consensus 388 ~Vi~L~r 394 (444)
T 3bgw_A 388 IIEFLYR 394 (444)
T ss_dssp EEEECCB
T ss_pred EEEEEec
Confidence 8887753
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=66.92 E-value=3.2 Score=37.68 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 43 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 43 vsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
...|++++.+|+++++| ||++|..+..++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887654
No 172
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=65.69 E-value=0.39 Score=48.55 Aligned_cols=51 Identities=14% Similarity=-0.005 Sum_probs=37.6
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCe
Q 009033 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDR 104 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~ 104 (546)
+..||+|+|||+.++ .+||+.+..++.+.|++.++ .|. .|++ +.+..++++
T Consensus 160 ~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~~-----~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 160 SGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMDV-----EIED-AAAEMIAKR 211 (334)
T ss_dssp GGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTTC-----CBCH-HHHHHHHHT
T ss_pred cccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcCC-----CcCH-HHHHHHHHh
Confidence 457999999998654 78899999999999999875 342 4653 445555553
No 173
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=65.02 E-value=8.6 Score=36.34 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=44.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 009033 52 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 109 (546)
Q Consensus 52 ~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H---------~p~~~i~~~~D~v~lL~ 109 (546)
+.+++++||--- +|.. .++.++.++..|..||++-+ .++.++.+++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 479999999876 6543 34777888878999999999 78899999999998875
No 174
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=64.30 E-value=6.6 Score=37.50 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=29.1
Q ss_pred HHHHHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 009033 45 IALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIH 92 (546)
Q Consensus 45 ia~~l~~~P~il~LDEPts-gLD~~~~~~v~~~L~~l~~~g~tvi~~~H 92 (546)
+..++..+|+++++||+-. ..+........+-+..+-..|..++.|+|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3333557899999999763 23322222233333335557888999988
No 175
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=63.54 E-value=2.8 Score=42.39 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHHh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033 33 RGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+.+|+|++|++..+.+++. +|++++ ||++|.....++.+.|.++..
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 3578999999999998887 688887 999999999999999988754
No 176
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=62.18 E-value=3.7 Score=39.51 Aligned_cols=47 Identities=6% Similarity=-0.012 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 54 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~ 54 (546)
+.....++++++-+.+|. +..++ ..+++|||+.+++..|++|+..|+
T Consensus 47 s~~~~s~~i~~le~~lg~-~L~~R-----~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 47 SYKSAWDAINEMNQLSEH-ILVER-----ATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp CHHHHHHHHHHHHHHHTS-CCEEE-----CCCC-----EEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC-CeEEe-----cCCCCCCCceEECHHHHHHHHHHH
Confidence 334445668888888998 55555 346899999999999999999886
No 177
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=60.23 E-value=49 Score=33.51 Aligned_cols=77 Identities=10% Similarity=0.002 Sum_probs=48.7
Q ss_pred HHHHHHHHHH--hCCCeEEEeCCCCCCC----------------HHHHHHHHHHHHHHHh-CCCEEEEEecCCc------
Q 009033 41 RRVSIALEIL--MRPRLLFLDEPTSGLD----------------SAAAFFVTQTLRCLSR-DGRTVIASIHQPS------ 95 (546)
Q Consensus 41 ~Rvsia~~l~--~~P~il~LDEPtsgLD----------------~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~------ 95 (546)
+-+.++..++ .+|+++++|+-++=.. ...-.++++.|+.+++ .|.|||++-|--.
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 3456667666 4699999998765443 1122345556667775 5889998887611
Q ss_pred ---------hHHHhhcCeEEEEeCCeEEEec
Q 009033 96 ---------SEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 96 ---------~~i~~~~D~v~lL~~G~~v~~G 117 (546)
.-+.+.+|-++.+++++.+..|
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g 236 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRRGEPIKEG 236 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEEEEEEEET
T ss_pred CCcccCCCcchhhhhCcEEEEEEeccccccC
Confidence 1245778999999864433333
No 178
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=59.84 E-value=1.9 Score=47.24 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033 33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 79 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~ 79 (546)
.++|+|++|++..+.....++.+|||||... |++.....+.+.|++
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 4789999999999999999999999999988 899888888777764
No 179
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=56.36 E-value=6.9 Score=38.82 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=31.1
Q ss_pred HhCCCeEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033 50 LMRPRLLFLDEPT-SGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 50 ~~~P~il~LDEPt-sgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~ 102 (546)
+.++++|++||.- ..+|...+..++. ++......+..+|+|++.+..++...+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 5678999999982 2344443444544 555443445678888888766665543
No 180
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=52.02 E-value=18 Score=36.80 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=38.3
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 009033 52 RPRLLFLDEPTSGLD---SAAAFFVTQTLRCLSRDGRTVIASIHQPS 95 (546)
Q Consensus 52 ~P~il~LDEPtsgLD---~~~~~~v~~~L~~l~~~g~tvi~~~H~p~ 95 (546)
+|.++++||-=.=++ +..+..+.+.+++.++.|..+++++|.|.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 588999999987774 67788888899999999999999999985
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=50.40 E-value=33 Score=34.40 Aligned_cols=53 Identities=25% Similarity=0.354 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCeEEEeCC-------CCCCCHHHHHHHHHHHHHHHh------CCCEEEEEecCC
Q 009033 42 RVSIALEILMRPRLLFLDEP-------TSGLDSAAAFFVTQTLRCLSR------DGRTVIASIHQP 94 (546)
Q Consensus 42 Rvsia~~l~~~P~il~LDEP-------tsgLD~~~~~~v~~~L~~l~~------~g~tvi~~~H~p 94 (546)
+-.+..+-..+|.+||+||. ..+.+.......-+.|..+.. .+..||.+++.|
T Consensus 166 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG
T ss_pred HHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh
Confidence 33444455578999999998 334443343333344444431 245677788875
No 182
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=49.21 E-value=27 Score=29.35 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=38.2
Q ss_pred HhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 50 LMRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 50 ~~~P~il~LD-EPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
..+|+.+++| ...+.+|+.....+.+..+++.+.|..++++--+
T Consensus 46 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 90 (130)
T 4dgh_A 46 QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGAN 90 (130)
T ss_dssp SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3578899999 7899999999999999999999988888877655
No 183
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.83 E-value=5.3 Score=39.89 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=25.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEecCC
Q 009033 52 RPRLLFLDEPTSGLDSAAAFFVTQTLRCL---SRDGRTVIASIHQP 94 (546)
Q Consensus 52 ~P~il~LDEPtsgLD~~~~~~v~~~L~~l---~~~g~tvi~~~H~p 94 (546)
.|.+|++||+....|......+..+++.+ ...+.++|+++|++
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 38899999998765321122223333333 23467899999986
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=48.55 E-value=12 Score=34.37 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=31.5
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q 009033 51 MRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRT-VIASIHQPS 95 (546)
Q Consensus 51 ~~P~il~LDEPtsgL-D~~~~~~v~~~L~~l~~~g~t-vi~~~H~p~ 95 (546)
.+|+++++||.-.-- +......+.+.+......+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965432 233367788888888776655 777777643
No 185
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=46.46 E-value=12 Score=33.92 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 009033 52 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95 (546)
Q Consensus 52 ~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~ 95 (546)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 478999999765 7877777666665432 23567888888753
No 186
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=46.34 E-value=19 Score=36.16 Aligned_cols=45 Identities=11% Similarity=-0.083 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009033 43 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP 94 (546)
Q Consensus 43 vsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p 94 (546)
-.+++++..++.++.||.+|. .++++.++.+.+ .|.|+|++||..
T Consensus 234 ~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 234 KKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 347788877777777775443 466667777764 589999999963
No 187
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=45.01 E-value=13 Score=40.68 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=46.3
Q ss_pred cCCCCHH-HHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 009033 32 LRGISGG-ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIH 92 (546)
Q Consensus 32 ~~~lSgG-er~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g-~tvi~~~H 92 (546)
..+++.+ +++...+.+.++.+|.-++++.+|.++|..+. ...+.++++...| +||++.+|
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence 3455443 55778899999999999999999999998844 4778888887654 67777777
No 188
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=44.35 E-value=26 Score=34.21 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHHHHHhCCCeEEEeCCCC-------------CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009033 45 IALEILMRPRLLFLDEPTS-------------GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP 94 (546)
Q Consensus 45 ia~~l~~~P~il~LDEPts-------------gLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p 94 (546)
+..+.-..|.++|+||.-+ +.......++++.+..+.. .+..||.+++.|
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 3344456799999999642 2223334455555554433 467889999986
No 189
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=43.93 E-value=15 Score=33.39 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=38.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------CchHHHhhcCeEEEEe
Q 009033 52 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ---------PSSEVFELFDRLYLLS 109 (546)
Q Consensus 52 ~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~---------p~~~i~~~~D~v~lL~ 109 (546)
+++++++||.=- +|+ .+++.|+.++++|..|+++-+. ++..+...+|.|.-|.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 3667788888789999998883 2245666788886553
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=41.51 E-value=3.9 Score=37.42 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH--HhhcCeEEEEe
Q 009033 36 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV--FELFDRLYLLS 109 (546)
Q Consensus 36 SgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i--~~~~D~v~lL~ 109 (546)
+.|+.+|..++.....+|+.+..+ .+.++|.....+.+.++.. .+.++|+.+|.. .+. ...+|.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l-~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLL-IENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTT-TTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechh-hhcCcHhhCCEEEEEE
Confidence 578899999998888887654332 3345555555554444332 355888888874 333 56788877763
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=41.33 E-value=27 Score=33.31 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEecCC
Q 009033 44 SIALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSR----DGRTVIASIHQP 94 (546)
Q Consensus 44 sia~~l~~~P~il~LDEPts----------gLD~~~~~~v~~~L~~l~~----~g~tvi~~~H~p 94 (546)
.+..+.-.+|.+|++||.-. +-|......+.+.+..+.. .+..+|++++.|
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 34444556889999999743 1255666777777777642 256788888765
No 192
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=41.02 E-value=94 Score=31.44 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=43.1
Q ss_pred HHHHHHHHHH--hCCCeEEEeCCCCCC-----CH--------HHHHHHHHHHHHH---Hh-CCCEEEEEecCCchH----
Q 009033 41 RRVSIALEIL--MRPRLLFLDEPTSGL-----DS--------AAAFFVTQTLRCL---SR-DGRTVIASIHQPSSE---- 97 (546)
Q Consensus 41 ~Rvsia~~l~--~~P~il~LDEPtsgL-----D~--------~~~~~v~~~L~~l---~~-~g~tvi~~~H~p~~~---- 97 (546)
+-+.++..++ .+++++++|..+.=. |. ..+..+.+.+++| ++ .|++||++.|- ...
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~-~~~~~~~ 217 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV-REKIGVM 217 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec-ccccCcc
Confidence 3456666776 468999999998643 11 1223344555554 44 58888888775 222
Q ss_pred ------------HHhhcCeEEEEeCCeE
Q 009033 98 ------------VFELFDRLYLLSGGKT 113 (546)
Q Consensus 98 ------------i~~~~D~v~lL~~G~~ 113 (546)
+.+.+|-++.|+.++.
T Consensus 218 fg~p~~~~gg~al~~~a~~rl~L~r~~~ 245 (366)
T 1xp8_A 218 YGNPETTTGGRALKFYASVRLDVRKIGQ 245 (366)
T ss_dssp --------CHHHHHHHCSEEEEEEEESC
T ss_pred cCCccccCCcchhhheeeEEEEEEecch
Confidence 3455777887776553
No 193
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=40.82 E-value=33 Score=31.94 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 009033 36 SGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 104 (546)
Q Consensus 36 SgGer~Rvsia~~l~~~P~il~LDEPts-gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~ 104 (546)
+.|.-.+.- ...+.+-+++++||.-. ++|.......++.+.....+-+++++|..-|...+.++|++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456554442 33578899999999976 68877665555555544444457777755555555555554
No 194
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=39.80 E-value=35 Score=28.96 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=37.2
Q ss_pred hCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 51 MRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 51 ~~P~il~LD-EPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
.+++.+++| ...+.+|+.....+.+..+++.+.|..++++--+
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 93 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVS 93 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCC
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 578899999 6788999999999999999999888888877554
No 195
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=39.58 E-value=0.52 Score=46.33 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCC
Q 009033 32 LRGISGGERRRVSIALEILMRPRLLFLDEPTS 63 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPts 63 (546)
+..|||||+||+.|++++..+|++| ||++.
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 4569999999999999999999986 99874
No 196
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=38.67 E-value=48 Score=28.22 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=36.3
Q ss_pred CCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 52 RPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 52 ~P~il~LD-EPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
+++.++|| ...+.+|+.....+.+..+++.+.|..+.++-.+
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 105 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCS 105 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCC
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67889999 7888999999999999999999888887777544
No 197
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.12 E-value=19 Score=35.43 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=31.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 009033 52 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 96 (546)
Q Consensus 52 ~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~ 96 (546)
+++++++|| ...|++.....+.+.+.+.... ..+|+++++|..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~-~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGV-TRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCC-ceEEEEeCchhh
Confidence 456999999 7889998888888887776443 456667776543
No 198
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=37.98 E-value=41 Score=29.91 Aligned_cols=42 Identities=17% Similarity=0.035 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033 71 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 71 ~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
.++++.++...+.|..+|.+|..+.+.+.+++|.++.+..++
T Consensus 93 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 93 KSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCS
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 677888888888898888888887788999999988876554
No 199
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=37.52 E-value=24 Score=28.42 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=42.3
Q ss_pred HhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 009033 50 LMRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 104 (546)
Q Consensus 50 ~~~P~il~LD-EPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~ 104 (546)
..+|+.+++| ....-+|+.....+.+..+++.+.|.++.++--+ ..+.+++++
T Consensus 41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~ 94 (99)
T 3oiz_A 41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMN--EASETMVDR 94 (99)
T ss_dssp TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESHH--HHHTTCC--
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHH
Confidence 3578888888 6788999999999999999999999998888654 356665554
No 200
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=36.68 E-value=41 Score=29.89 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033 71 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 71 ~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
.++++.++...++|.++|.+|..+.+.+.+++|.++....|.
T Consensus 124 ~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~~ 165 (188)
T 1tk9_A 124 PNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDD 165 (188)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCCC
Confidence 567777777777898888888877788999999988776543
No 201
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=35.84 E-value=44 Score=29.70 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033 71 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 71 ~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
.++++.++...+.|.++|.+|..+.+.+.+++|.++.+..++
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 142 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRG 142 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCC
Confidence 567788888888898888888887888999999999886554
No 202
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=35.73 E-value=55 Score=27.80 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=32.6
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 009033 51 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95 (546)
Q Consensus 51 ~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~ 95 (546)
.++.+|++||.- .|+...+..+.+.+.+-.+.+..+|+++..+.
T Consensus 74 a~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~ 117 (143)
T 3co5_A 74 AEGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYAA 117 (143)
T ss_dssp TTTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEECT
T ss_pred CCCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCCH
Confidence 356899999965 67888888888888776445567787777653
No 203
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=35.65 E-value=1.2e+02 Score=31.72 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=45.1
Q ss_pred HHHHHHHHH--hCCCeEEEeCCCCCC-------CH-HHHHHHHHHHHHHHh-CCCEEEEEecCCc---------------
Q 009033 42 RVSIALEIL--MRPRLLFLDEPTSGL-------DS-AAAFFVTQTLRCLSR-DGRTVIASIHQPS--------------- 95 (546)
Q Consensus 42 Rvsia~~l~--~~P~il~LDEPtsgL-------D~-~~~~~v~~~L~~l~~-~g~tvi~~~H~p~--------------- 95 (546)
-+..++.++ .+|+++++|=-+. + +. ....++++.|+++++ .|++||++.|-..
T Consensus 342 i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l 420 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI 420 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence 334444544 4699999995543 2 21 233567788888886 5899999988642
Q ss_pred ------hHHHhhcCeEEEEe
Q 009033 96 ------SEVFELFDRLYLLS 109 (546)
Q Consensus 96 ------~~i~~~~D~v~lL~ 109 (546)
..+.+.+|-|+.|.
T Consensus 421 ~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 421 TDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SSCSSSSHHHHHCSEEEEEE
T ss_pred hhhccchHhhecCcEEEEEE
Confidence 23567789999885
No 204
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=35.49 E-value=45 Score=29.55 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033 70 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 70 ~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
..++++.++...+.|..+|.+|..+.+.+.+++|.++....+
T Consensus 109 t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~~~ 150 (183)
T 2xhz_A 109 SSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVA 150 (183)
T ss_dssp CHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECCCS
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeCCC
Confidence 366778888887788888888887788899999999888654
No 205
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=34.70 E-value=30 Score=28.76 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=36.3
Q ss_pred hCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009033 51 MRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94 (546)
Q Consensus 51 ~~P~il~LD-EPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p 94 (546)
.+|+.+++| ...+.+|+.....+.+..+++.+ |..++++--+|
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~ 87 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEF 87 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCH
Confidence 678888888 67889999999999999999988 88888876553
No 206
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=34.45 E-value=9.5 Score=32.35 Aligned_cols=73 Identities=21% Similarity=0.169 Sum_probs=48.8
Q ss_pred CCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEecChhHHHHHH
Q 009033 52 RPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSAAFEFF 126 (546)
Q Consensus 52 ~P~il~LD-EPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~-~G~~v~~G~~~~~~~~f 126 (546)
+++.+++| .-.+.+|+.....+.+..+++.+.|..++++--+| .+.+.+++.-+.. -|+.-.+.+.+++++.+
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~ 121 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQ--DLRESLRAASLLDKIGEDHIFMTLPTAVQAF 121 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSS--HHHHHHHHCTTHHHHCTTEEESCHHHHHHHH
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHcCChhhcCcceeECCHHHHHHHH
Confidence 46789999 77899999999999999999999888888876654 4555443322111 02222344555555543
No 207
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=33.93 E-value=1.1 Score=47.11 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=28.0
Q ss_pred HHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEE
Q 009033 13 TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 57 (546)
Q Consensus 13 ~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~ 57 (546)
.+..+|+.+.. ....|||||+|| ||++|+.+|++..
T Consensus 279 rL~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 279 RLRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 46677876542 224699999999 9999999999875
No 208
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=32.92 E-value=50 Score=29.58 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033 71 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 71 ~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
.++++.++...+.|.++|.+|..+.+.+.+++|.++.+..+
T Consensus 130 ~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 130 PNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 56777777777788888888887778889999988766544
No 209
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=32.46 E-value=1.1e+02 Score=24.00 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=36.5
Q ss_pred HHHhCC-CeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 48 EILMRP-RLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 48 ~l~~~P-~il~LD-EPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
.+-..+ +.+++| .-.+.+|+.....+.+..+++.++|..+.++--.
T Consensus 38 ~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 85 (110)
T 1sbo_A 38 FISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLK 85 (110)
T ss_dssp HHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred HHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 333444 778899 7888999999999999999999888877766443
No 210
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=32.36 E-value=83 Score=29.15 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=25.1
Q ss_pred HHHHhCCCeEEEeCCCCCC-----------CHHHHHHHHHHHHHHHh----CCCEEEEEecCC
Q 009033 47 LEILMRPRLLFLDEPTSGL-----------DSAAAFFVTQTLRCLSR----DGRTVIASIHQP 94 (546)
Q Consensus 47 ~~l~~~P~il~LDEPtsgL-----------D~~~~~~v~~~L~~l~~----~g~tvi~~~H~p 94 (546)
.+.-..|.+|++||.-.=. +......+.+.+..+.. .+..+|.++..|
T Consensus 93 ~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 93 EARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRA 155 (262)
T ss_dssp HHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred HHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCCh
Confidence 3334568999999986521 22333344455555443 245677777765
No 211
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=30.92 E-value=38 Score=30.65 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033 71 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 71 ~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
.++++.++...+.|.+||.+|..+.+.+.+++|.++.+..++
T Consensus 106 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 147 (201)
T 3fxa_A 106 GELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSK 147 (201)
T ss_dssp HHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 567777787777899999999888889999999999887653
No 212
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=30.24 E-value=74 Score=28.58 Aligned_cols=42 Identities=14% Similarity=0.013 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhh---cCeEEEEeCCe
Q 009033 71 FFVTQTLRCLSRDGRTVIASIHQPSSEVFEL---FDRLYLLSGGK 112 (546)
Q Consensus 71 ~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~---~D~v~lL~~G~ 112 (546)
.++++.++...+.|.++|.+|-.+.+.+.++ +|.++....++
T Consensus 127 ~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~ 171 (199)
T 1x92_A 127 ANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKI 171 (199)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCc
Confidence 6778888888888988888888888899999 99988776543
No 213
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=29.95 E-value=44 Score=32.79 Aligned_cols=68 Identities=16% Similarity=0.049 Sum_probs=42.3
Q ss_pred HHHHHHHHHh---CCCeEEEeCCCCCC--------CHHH----HHHHHHHHHHHHh-CCCEEEEEecCCch---------
Q 009033 42 RVSIALEILM---RPRLLFLDEPTSGL--------DSAA----AFFVTQTLRCLSR-DGRTVIASIHQPSS--------- 96 (546)
Q Consensus 42 Rvsia~~l~~---~P~il~LDEPtsgL--------D~~~----~~~v~~~L~~l~~-~g~tvi~~~H~p~~--------- 96 (546)
-+.....++. +++++++|.-+.-. +... ..++++.|+++++ .|.+||++.|- ..
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~-~~~~~~~~g~~ 269 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV-SAKPDAFFGMA 269 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECE-ECC-------C
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce-eecCCCCCCCC
Confidence 3444555664 58999999988632 1122 2456666777765 58888887663 22
Q ss_pred -------HHHhhcCeEEEEeC
Q 009033 97 -------EVFELFDRLYLLSG 110 (546)
Q Consensus 97 -------~i~~~~D~v~lL~~ 110 (546)
.+.+.+|.++.|+.
T Consensus 270 ~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 270 EQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp CEESSHHHHHHHCSEEEEEEE
T ss_pred cCCCCcHHHHhcCcEEEEEEe
Confidence 24456677777764
No 214
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=29.78 E-value=57 Score=29.63 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=43.8
Q ss_pred CCCeEEEeCCCC-CCCHHH----------HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033 52 RPRLLFLDEPTS-GLDSAA----------AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 52 ~P~il~LDEPts-gLD~~~----------~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
+.++.+++++.. .+++.. ..++++.++...+.|.+||.+|-.+.+.+.+++|.++.+..++
T Consensus 73 g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~ 144 (200)
T 1vim_A 73 GYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKM 144 (200)
T ss_dssp TCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSC
T ss_pred CCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEECCcc
Confidence 456666666543 233322 3677788888777898888888888888999999998876654
No 215
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=29.58 E-value=1.2e+02 Score=30.17 Aligned_cols=61 Identities=16% Similarity=0.276 Sum_probs=33.4
Q ss_pred HHHHHhCCCeEEEeCCCCCCCH----------HHHHHHHHHHHHHHh--CCCEEEEEecCC---chHHHhhcCeEE
Q 009033 46 ALEILMRPRLLFLDEPTSGLDS----------AAAFFVTQTLRCLSR--DGRTVIASIHQP---SSEVFELFDRLY 106 (546)
Q Consensus 46 a~~l~~~P~il~LDEPtsgLD~----------~~~~~v~~~L~~l~~--~g~tvi~~~H~p---~~~i~~~~D~v~ 106 (546)
..+--.+|.+||+||--+=... ....+++..+..+.. .+..||.+++.| ...+...||+.+
T Consensus 137 ~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i 212 (355)
T 2qp9_X 137 AMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRI 212 (355)
T ss_dssp HHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEE
T ss_pred HHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEE
Confidence 3334468999999997542211 112333333443322 356777788876 344555566654
No 216
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=28.93 E-value=1.8e+02 Score=28.37 Aligned_cols=61 Identities=26% Similarity=0.347 Sum_probs=32.3
Q ss_pred HHHHHHhCCCeEEEeCCCC-------CCCHHHHHHHHHHHHHHH-----hCCCEEEEEecCCc---hHHHhhcCeE
Q 009033 45 IALEILMRPRLLFLDEPTS-------GLDSAAAFFVTQTLRCLS-----RDGRTVIASIHQPS---SEVFELFDRL 105 (546)
Q Consensus 45 ia~~l~~~P~il~LDEPts-------gLD~~~~~~v~~~L~~l~-----~~g~tvi~~~H~p~---~~i~~~~D~v 105 (546)
+..+-..+|.+||+||.-+ +........+-+.|..+. ..+..||.++..|. ..+...||+.
T Consensus 98 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~ 173 (322)
T 1xwi_A 98 FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKR 173 (322)
T ss_dssp HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEE
T ss_pred HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeE
Confidence 3344456899999999743 212222222333444443 23567777887762 2334445544
No 217
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=27.95 E-value=30 Score=33.86 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHH--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCchHHHhhcCeEE
Q 009033 35 ISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDSAA-AFFVTQTLRCLSRD-GR--TVIASIHQPSSEVFELFDRLY 106 (546)
Q Consensus 35 lSgGer~Rvsia~~l~--~~P~il~LDEPtsgLD~~~-~~~v~~~L~~l~~~-g~--tvi~~~H~p~~~i~~~~D~v~ 106 (546)
+|+|++ .++..+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+. ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 888886 4556665 68999998 7888876 66777888888763 43 566677773 56767776654
No 218
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=27.66 E-value=78 Score=29.27 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHh--CCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033 70 AFFVTQTLRCLSR--DGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 70 ~~~v~~~L~~l~~--~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
..++++.++...+ .|.++|.+|..+.+.+.+++|.++....++
T Consensus 119 t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~ 163 (220)
T 3etn_A 119 TREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPA 163 (220)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCC
T ss_pred CHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 3678888888888 899999999888889999999998886654
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=26.87 E-value=58 Score=34.40 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=29.1
Q ss_pred HHHHHHhCCCeEEEeCCC----------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009033 45 IALEILMRPRLLFLDEPT----------SGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP 94 (546)
Q Consensus 45 ia~~l~~~P~il~LDEPt----------sgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p 94 (546)
+..+.-..|.+|||||-- ..++......+++.+..+.. .+..||.+++.|
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 334445678999999961 12222334444455554433 356778888886
No 220
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=26.72 E-value=75 Score=31.76 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033 70 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 70 ~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
..++++.++...+.|.++|.+|..|.+.+-+.+|.++.+..|.
T Consensus 104 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 146 (344)
T 3fj1_A 104 SPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHAGP 146 (344)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeeecCCCC
Confidence 4778888888888899999999998999999999999998775
No 221
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=26.33 E-value=74 Score=26.98 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=31.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009033 52 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 98 (546)
Q Consensus 52 ~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i 98 (546)
+..+|++||.- .|++..+..+.+.|+.. ..+..+|+++..+..+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHHH
Confidence 66899999984 68888888888877332 23456778877765443
No 222
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=26.00 E-value=63 Score=28.61 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=28.7
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009033 51 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94 (546)
Q Consensus 51 ~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p 94 (546)
.++.++++||. ..++......+.+.+.+.. .+..+|+++..+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 46889999995 4567776666666666532 345677777765
No 223
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=25.92 E-value=23 Score=32.28 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=29.6
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033 50 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 50 ~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
..+|+|+|=||..+|=|-.+...+.+.|..|+.
T Consensus 69 n~n~dIvF~deE~tgadR~Mt~Rc~~kL~~La~ 101 (187)
T 3k7i_B 69 NYNPDIIFKDEENTGADRLMTQRCKDRLNSLAI 101 (187)
T ss_dssp CCCTTEEECCTTSSSGGGEECHHHHHHHHHHHH
T ss_pred cCCCceEecCccCCCcchhhCHHHHHHHHHHHH
Confidence 348999999999999999999999999998875
No 224
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=25.55 E-value=2.3e+02 Score=34.92 Aligned_cols=73 Identities=11% Similarity=0.013 Sum_probs=46.4
Q ss_pred HHHHHHHHHH--hCCCeEEEeCCCCCCCH-------------HHHHHHHHHHHH---HHh-CCCEEEEEecC--------
Q 009033 41 RRVSIALEIL--MRPRLLFLDEPTSGLDS-------------AAAFFVTQTLRC---LSR-DGRTVIASIHQ-------- 93 (546)
Q Consensus 41 ~Rvsia~~l~--~~P~il~LDEPtsgLD~-------------~~~~~v~~~L~~---l~~-~g~tvi~~~H~-------- 93 (546)
+-...++.++ .+|+++++|+.+.=... ....++.+.+++ +++ .|++||++.|.
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~ 876 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 876 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 3444555554 57999999999875521 123345555555 454 68999999883
Q ss_pred --C-----chHHHhhcCeEEEEeCCeE
Q 009033 94 --P-----SSEVFELFDRLYLLSGGKT 113 (546)
Q Consensus 94 --p-----~~~i~~~~D~v~lL~~G~~ 113 (546)
| +..+.+.+|-++.++.++.
T Consensus 877 Gdp~~p~gs~~Leq~ADvvl~L~R~~~ 903 (1706)
T 3cmw_A 877 GNPETTTGGNALKFYASVRLDIRRIGA 903 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEeccc
Confidence 2 1246677888888875543
No 225
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=25.31 E-value=79 Score=31.33 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033 70 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 70 ~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
..++++.++...+.|.++|.+|..+.+.+.+.+|.++.+..|.
T Consensus 87 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 129 (329)
T 3eua_A 87 TPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGD 129 (329)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCST
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCC
Confidence 4677788888878899999999999999999999999888664
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=24.65 E-value=1.2e+02 Score=29.00 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=36.8
Q ss_pred HHHHHHhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHh----------CCCEEEEEecCCchHHHhh
Q 009033 45 IALEILMRP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSR----------DGRTVIASIHQPSSEVFEL 101 (546)
Q Consensus 45 ia~~l~~~P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~----------~g~tvi~~~H~p~~~i~~~ 101 (546)
+..++-..| .++++||. ..|++.....+.+.|..-.- .+..+|++++....++.+.
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~ 177 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEG 177 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTT
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhh
Confidence 444555555 79999998 67888888888888776431 1334778887754444443
No 227
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=24.47 E-value=1e+02 Score=27.43 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhh---cCeEEEEeCC
Q 009033 71 FFVTQTLRCLSRDGRTVIASIHQPSSEVFEL---FDRLYLLSGG 111 (546)
Q Consensus 71 ~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~---~D~v~lL~~G 111 (546)
.++++.++...+.|.++|.+|..+.+.+.++ +|.++.+..+
T Consensus 123 ~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~ 166 (196)
T 2yva_A 123 RDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCC
Confidence 6778888888888988888888877888888 8987776544
No 228
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=24.00 E-value=71 Score=29.24 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033 71 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 71 ~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
.++++.++...+.|.++|.+|-.+.+.+.+++|.++.+..|
T Consensus 145 ~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~g 185 (212)
T 2i2w_A 145 ANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHF 185 (212)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCCC
Confidence 56778888877788888888887778889999998887765
No 229
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=23.84 E-value=1.8e+02 Score=23.48 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=24.4
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 51 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 51 ~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
..|+++++|--..+.|. .++++.+++... +..||+.+-+
T Consensus 48 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~-~~~ii~ls~~ 86 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSG---MDILREIKKITP-HMAVIILTGH 86 (143)
T ss_dssp TTCCEEEEESCCSSSCH---HHHHHHHHHHCT-TCEEEEEECT
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHHhCC-CCeEEEEECC
Confidence 47999999988877765 345555555432 3444444433
No 230
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=23.81 E-value=90 Score=28.45 Aligned_cols=43 Identities=9% Similarity=0.022 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc---CeEEEEeCCe
Q 009033 70 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF---DRLYLLSGGK 112 (546)
Q Consensus 70 ~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~---D~v~lL~~G~ 112 (546)
..++++.++...+.|.++|.+|..+.+.+.+++ |.++.+...+
T Consensus 127 t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~~ 172 (201)
T 3trj_A 127 SENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSDN 172 (201)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCCC
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCCC
Confidence 356778888888889888888888788899999 9988776543
No 231
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=22.50 E-value=86 Score=27.54 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033 71 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 71 ~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
.++++.++...+.|.++|.+|..+.+ +.+.+|.++....
T Consensus 96 ~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 96 ESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLEV 134 (180)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECCC
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeCC
Confidence 67788888888889888888887777 8899998887754
No 232
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=22.36 E-value=2.6e+02 Score=21.78 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=24.6
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 51 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 51 ~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
..|+++++|--..+.|. .++.+.+++... +..||+.+..
T Consensus 46 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~-~~~ii~~s~~ 84 (124)
T 1srr_A 46 ERPDLVLLDMKIPGMDG---IEILKRMKVIDE-NIRVIIMTAY 84 (124)
T ss_dssp HCCSEEEEESCCTTCCH---HHHHHHHHHHCT-TCEEEEEESS
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHHhCC-CCCEEEEEcc
Confidence 58999999988877775 345555555422 3445544443
No 233
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=22.25 E-value=2e+02 Score=22.69 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=23.9
Q ss_pred CCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 52 RPRLLFLDEPTSG-LDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 52 ~P~il~LDEPtsg-LD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
.|+++++|--..+ .|. .++.+.+++....-..|+++.+.
T Consensus 50 ~~dlvi~d~~l~~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDG---WQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp CCCEEEEESCCSSSSCH---HHHHHHHHHHCTTCCEEEEESSC
T ss_pred CCCEEEEeeeCCCCCCH---HHHHHHHHhcCCCCCEEEEeCCc
Confidence 6999999987775 664 35566666553322344444444
No 234
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=22.19 E-value=58 Score=32.52 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 009033 35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIH 92 (546)
Q Consensus 35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g-~tvi~~~H 92 (546)
-+++++++..++...+.+|+++++.-..+..|..+ ....+.++.+...| .++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777774334445443 45566777777666 45555554
No 235
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=21.39 E-value=1.1e+02 Score=28.73 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=31.2
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC----------------CCEEEEEecCCch---HHHhhcCeEEEEe
Q 009033 51 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD----------------GRTVIASIHQPSS---EVFELFDRLYLLS 109 (546)
Q Consensus 51 ~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~----------------g~tvi~~~H~p~~---~i~~~~D~v~lL~ 109 (546)
.+.+|++|||.+. .....+-+.++.+-.. ...+|+|+..+.. ....+-+|+..+.
T Consensus 102 ~~~kIiiLDEad~----~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~ 175 (212)
T 1tue_A 102 TDTKVAMLDDATT----TCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFE 175 (212)
T ss_dssp TTCSSEEEEEECH----HHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEE
T ss_pred CCCCEEEEECCCc----hhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEE
Confidence 3578999999973 2223333345554211 3578888876422 2234567777654
No 236
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=21.39 E-value=31 Score=31.20 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=27.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033 52 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 52 ~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+|+|+|-||-.+|-|-....++.+.|..|+.
T Consensus 63 n~divFrDee~tg~~~~Md~rl~d~L~~L~~ 93 (170)
T 3n1g_B 63 NPDIIFKDEENSGADRLMTERCKERVNALAI 93 (170)
T ss_dssp CTTEEECCTTSSSGGGEECHHHHHHHHHHHH
T ss_pred CCCcEEecccccCCcccCCHHHHHHHHHHHH
Confidence 8999999999998888888888888888874
No 237
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=21.35 E-value=89 Score=31.10 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033 70 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 70 ~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
..++++.++...+.|..+|.+|..|.+.+.+.+|.++.+..|.
T Consensus 103 T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~g~ 145 (334)
T 3hba_A 103 SPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLRAGE 145 (334)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeecCCC
Confidence 4677888888888899999999988899999999999998765
No 238
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=21.32 E-value=3.9e+02 Score=25.28 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q 009033 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD 66 (546)
|+.++.+++++..++.+-=..-.|-..|.. + -..++-...-...+.+-.++|+|--|++..
T Consensus 80 ~s~~ei~~~l~~al~~vP~a~GvnNHmGS~----~-T~~~~~m~~vm~~l~~~gL~fvDS~Ts~~S 140 (245)
T 2nly_A 80 LSVGEVKSRVRKAFDDIPYAVGLNNHMGSK----I-VENEKIMRAILEVVKEKNAFIIDSGTSPHS 140 (245)
T ss_dssp CCHHHHHHHHHHHHHHSTTCCEEEEEECTT----G-GGCHHHHHHHHHHHHHTTCEEEECCCCSSC
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecccccc----h-hcCHHHHHHHHHHHHHCCCEEEcCCCCccc
Confidence 467788888888888874322233334431 1 112333444444455667999999997653
No 239
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.29 E-value=1.7e+02 Score=27.17 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=25.5
Q ss_pred HhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCC
Q 009033 50 LMRPRLLFLDEP----------TSGLDSAAAFFVTQTLRCLS----RDGRTVIASIHQP 94 (546)
Q Consensus 50 ~~~P~il~LDEP----------tsgLD~~~~~~v~~~L~~l~----~~g~tvi~~~H~p 94 (546)
-..|.++++||- .++-+......+.+.|+.+. ..+..||.++++|
T Consensus 102 ~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 102 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160 (257)
T ss_dssp TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence 346789999996 11111122233344455443 2356788899887
No 240
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=21.25 E-value=2.4e+02 Score=21.77 Aligned_cols=40 Identities=8% Similarity=0.278 Sum_probs=24.5
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033 51 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93 (546)
Q Consensus 51 ~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~ 93 (546)
.+|+++++|--..+.|. .++.+.+++....-..|+++.+.
T Consensus 46 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNG---IDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HCCSEEEEECSCGGGCH---HHHHHHHHHHCTTCCEEEEECTT
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHhhCCCCeEEEEeCCC
Confidence 47999999987777664 35555665543332344444443
No 241
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.05 E-value=1.8e+02 Score=30.13 Aligned_cols=74 Identities=26% Similarity=0.331 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCchHHHhhcCeEEE
Q 009033 42 RVSIALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSR----DGRTVIASIHQPSSEVFELFDRLYL 107 (546)
Q Consensus 42 Rvsia~~l~~~P~il~LDEPts----------gLD~~~~~~v~~~L~~l~~----~g~tvi~~~H~p~~~i~~~~D~v~l 107 (546)
|-....+-...|.|+|+||--+ +=|......+..+|..+-. .+..||.+|..|.. .|.- +
T Consensus 264 r~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~-----LD~A-l 337 (434)
T 4b4t_M 264 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV-----LDPA-L 337 (434)
T ss_dssp HHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC-----CCTT-T
T ss_pred HHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh-----cCHh-H
Confidence 4444555567899999999421 2233444445556666532 36788999999732 2322 2
Q ss_pred EeCCe---EEEecChhH
Q 009033 108 LSGGK---TVYFGETSA 121 (546)
Q Consensus 108 L~~G~---~v~~G~~~~ 121 (546)
++.|| .++.+.|+.
T Consensus 338 lRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 338 LRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp CSTTSEEEEEECCCCCH
T ss_pred hcCCceeEEEEeCCcCH
Confidence 34454 467776643
No 242
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.62 E-value=1.7e+02 Score=24.16 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=34.5
Q ss_pred hCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 009033 51 MRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92 (546)
Q Consensus 51 ~~P~il~LD-EPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H 92 (546)
.+++-+++| +-.+.+|+.....+.+..+++.+.|..+.++--
T Consensus 50 ~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~ 92 (125)
T 2ka5_A 50 KGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSP 92 (125)
T ss_dssp TTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 467788888 678899999999999999999887777766643
No 243
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=20.35 E-value=99 Score=28.23 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=41.9
Q ss_pred HhCCCeEEEeCCCC----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCch---------HHHhhcCeEEEEe
Q 009033 50 LMRPRLLFLDEPTS----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSS---------EVFELFDRLYLLS 109 (546)
Q Consensus 50 ~~~P~il~LDEPts----gLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~---------~i~~~~D~v~lL~ 109 (546)
-.+|+++++|.-+. .-|.....+++..|+++++ .|++++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35899999996543 1245566778888888886 58999999986422 1345688888875
No 244
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=20.19 E-value=99 Score=30.93 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033 70 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 70 ~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
..++++.++...+.|.++|.+|..+.+.+.+.+|.++.+..|
T Consensus 102 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g 143 (347)
T 3fkj_A 102 TAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWA 143 (347)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCC
T ss_pred cHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccC
Confidence 466777777777779999999998899999999999999877
No 245
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=20.08 E-value=2.5e+02 Score=34.57 Aligned_cols=74 Identities=14% Similarity=0.003 Sum_probs=47.1
Q ss_pred HHHHHHH--hCCCeEEEeCCCCCCCH-------------HHHHHHHHHHHHH---Hh-CCCEEEEEecCCc---------
Q 009033 44 SIALEIL--MRPRLLFLDEPTSGLDS-------------AAAFFVTQTLRCL---SR-DGRTVIASIHQPS--------- 95 (546)
Q Consensus 44 sia~~l~--~~P~il~LDEPtsgLD~-------------~~~~~v~~~L~~l---~~-~g~tvi~~~H~p~--------- 95 (546)
.+++.++ .+|+++++|..+.=... .....+.+.+++| ++ .|++||++.|...
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4555554 47999999999876541 1223344555554 43 6899999988521
Q ss_pred ------hHHHhhcCeEEEEeCCeEEEec
Q 009033 96 ------SEVFELFDRLYLLSGGKTVYFG 117 (546)
Q Consensus 96 ------~~i~~~~D~v~lL~~G~~v~~G 117 (546)
..+.+.+|-++.+...+....|
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~~~~~g 558 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIGAVKEG 558 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEEEEEET
T ss_pred ccCCCCcceeeeCCEEEEEEeccccccC
Confidence 2466788988888765443333
Done!