Query 009033
Match_columns 546
No_of_seqs 281 out of 3141
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 17:18:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009033.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009033hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g2912 c.37.1.12 (1:1-240) Ma 100.0 1.4E-28 1E-32 239.5 17.5 118 1-124 111-229 (240)
2 d1v43a3 c.37.1.12 (A:7-245) Hy 100.0 1.8E-28 1.3E-32 238.3 16.3 118 1-124 108-226 (239)
3 d1oxxk2 c.37.1.12 (K:1-242) Gl 100.0 2.3E-28 1.7E-32 237.8 16.3 118 1-124 112-230 (242)
4 d2awna2 c.37.1.12 (A:4-235) Ma 100.0 2.4E-28 1.8E-32 236.6 14.6 117 2-124 103-220 (232)
5 d3dhwc1 c.37.1.12 (C:1-240) Me 99.9 4.2E-28 3.1E-32 236.0 13.8 116 1-122 112-228 (240)
6 d2onka1 c.37.1.12 (A:1-240) Mo 99.9 7.4E-28 5.4E-32 233.7 15.1 116 2-123 99-215 (240)
7 d1b0ua_ c.37.1.12 (A:) ATP-bin 99.9 7.1E-27 5.2E-31 230.4 17.1 117 2-124 121-238 (258)
8 d3d31a2 c.37.1.12 (A:1-229) Su 99.9 7E-27 5.1E-31 225.7 14.5 111 7-123 105-216 (229)
9 d1vpla_ c.37.1.12 (A:) Putativ 99.9 1.7E-26 1.2E-30 225.2 16.2 118 2-125 106-223 (238)
10 d1l2ta_ c.37.1.12 (A:) MJ0796 99.9 1.4E-26 1E-30 224.1 15.3 111 2-119 117-229 (230)
11 d1ji0a_ c.37.1.12 (A:) Branche 99.9 1.2E-26 9E-31 226.5 13.5 114 4-123 113-227 (240)
12 d1g6ha_ c.37.1.12 (A:) MJ1267 99.9 2.3E-26 1.7E-30 226.6 15.4 115 4-124 125-239 (254)
13 d1l7vc_ c.37.1.12 (C:) ABC tra 99.9 3.6E-25 2.6E-29 215.1 11.7 113 5-123 101-220 (231)
14 d3b60a1 c.37.1.12 (A:329-581) 99.9 2.1E-24 1.5E-28 212.2 14.7 113 8-124 120-239 (253)
15 d2pmka1 c.37.1.12 (A:467-707) 99.9 1.1E-23 8.3E-28 205.3 15.4 101 20-124 126-226 (241)
16 d1jj7a_ c.37.1.12 (A:) Peptide 99.9 7.8E-24 5.7E-28 207.9 13.8 104 18-124 136-240 (251)
17 d2hyda1 c.37.1.12 (A:324-578) 99.9 1.7E-23 1.2E-27 205.7 14.9 113 8-124 122-241 (255)
18 d1mv5a_ c.37.1.12 (A:) Multidr 99.9 5.7E-24 4.2E-28 207.7 11.2 102 19-124 125-226 (242)
19 d1r0wa_ c.37.1.12 (A:) Cystic 99.9 1.7E-22 1.2E-26 201.5 11.5 104 18-124 143-246 (281)
20 d1sgwa_ c.37.1.12 (A:) Putativ 99.7 4.8E-18 3.5E-22 160.9 8.7 93 8-110 105-197 (200)
21 g1f2t.1 c.37.1.12 (A:,B:) Rad5 99.5 1.2E-14 8.9E-19 142.4 11.0 80 32-113 199-286 (292)
22 g1ii8.1 c.37.1.12 (A:,B:) Rad5 99.2 9E-12 6.6E-16 123.4 9.5 78 32-111 276-361 (369)
23 d1w1wa_ c.37.1.12 (A:) Smc hea 98.8 3.7E-09 2.7E-13 108.2 9.4 74 33-108 331-408 (427)
24 d1e69a_ c.37.1.12 (A:) Smc hea 98.1 5.1E-06 3.7E-10 80.9 9.8 77 32-111 217-299 (308)
25 d1ye8a1 c.37.1.11 (A:1-178) Hy 98.0 9.1E-07 6.6E-11 79.1 2.0 80 34-117 81-161 (178)
26 g1xew.1 c.37.1.12 (X:,Y:) Smc 97.2 0.0016 1.1E-07 63.2 12.9 76 31-109 221-300 (329)
27 d1ewqa2 c.37.1.12 (A:542-765) 92.6 0.12 9E-06 47.2 7.6 64 37-102 99-163 (224)
28 d1wb9a2 c.37.1.12 (A:567-800) 89.7 0.27 2E-05 45.1 6.8 58 37-94 105-164 (234)
29 d1g5ta_ c.37.1.11 (A:) ATP:cor 82.7 0.53 3.8E-05 40.4 4.3 67 43-110 83-153 (157)
30 d1cr2a_ c.37.1.11 (A:) Gene 4 49.4 15 0.0011 32.8 6.9 44 50-93 145-196 (277)
31 d1nlfa_ c.37.1.11 (A:) Hexamer 42.7 29 0.0021 30.4 7.9 46 48-93 128-179 (274)
32 d1d2na_ c.37.1.20 (A:) Hexamer 40.7 20 0.0015 31.8 6.3 62 33-94 78-153 (246)
33 d1u0sy_ c.23.1.1 (Y:) CheY pro 39.8 61 0.0044 24.7 8.5 72 6-93 13-84 (118)
34 d1m3sa_ c.80.1.3 (A:) Hypothet 38.2 19 0.0014 30.4 5.4 42 70-111 92-133 (186)
35 d1r7ra3 c.37.1.20 (A:471-735) 37.0 41 0.003 29.9 7.9 56 40-95 88-157 (265)
36 d1vima_ c.80.1.3 (A:) Hypothet 27.1 32 0.0023 29.0 5.0 42 70-111 95-136 (192)
37 d1tf7a2 c.37.1.11 (A:256-497) 26.5 35 0.0026 29.2 5.3 59 51-109 115-186 (242)
38 d1l8qa2 c.37.1.20 (A:77-289) C 25.9 74 0.0054 27.1 7.3 50 49-98 94-144 (213)
39 d1bupa1 c.55.1.1 (A:4-188) Hea 25.3 23 0.0016 29.8 3.5 40 22-63 136-175 (185)
40 d1lrza2 d.108.1.4 (A:1-165) Me 24.2 46 0.0033 27.5 5.3 62 65-133 81-142 (165)
41 d1jbea_ c.23.1.1 (A:) CheY pro 21.7 1.6E+02 0.012 22.3 8.4 73 5-93 15-89 (128)
42 d1ixza_ c.37.1.20 (A:) AAA dom 20.4 78 0.0057 27.7 6.4 46 49-94 98-157 (247)
No 1
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=99.96 E-value=1.4e-28 Score=239.47 Aligned_cols=118 Identities=27% Similarity=0.463 Sum_probs=109.8
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++++++++++++.+||++.+|++ +++|||||||||+|||+|+++|++|+|||||+|||+.++.++++.|+++
T Consensus 111 ~~~~e~~~~v~~~l~~~~l~~~~~~~-----p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l 185 (240)
T d1g2912 111 VPRQEIDQRVREVAELLGLTELLNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185 (240)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHH
Confidence 35778899999999999999988874 4679999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.++ |.|||++||++ .++.++||||++|++|++++.|+++++.+
T Consensus 186 ~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 186 QRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 875 99999999994 89999999999999999999999998754
No 2
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.95 E-value=1.8e-28 Score=238.28 Aligned_cols=118 Identities=24% Similarity=0.390 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++.+++++++++.+||++.+|+ ++.+|||||||||+|||+|+.+|+||+|||||+|||+.++.++.+.|+++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l 182 (239)
T d1v43a3 108 FPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 182 (239)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHH
Confidence 3678889999999999999998888 45679999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
++ .|+|||++||++ .++.++||||++|++|+++..|+++++.+
T Consensus 183 ~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 183 QQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 76 499999999995 89999999999999999999999998743
No 3
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.95 E-value=2.3e-28 Score=237.76 Aligned_cols=118 Identities=28% Similarity=0.448 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++.+++++++++.+||++.+|+.. .+|||||||||+|||+|+++|++|+|||||+|||+.++.++++.|+++
T Consensus 112 ~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l 186 (242)
T d1oxxk2 112 MSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186 (242)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcChHhhhhCCh-----hhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHH
Confidence 367788999999999999999888854 579999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+ .|.|+|++||++ .++.++||||++|++|+++..|+++++.+
T Consensus 187 ~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 187 QSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 76 599999999995 78999999999999999999999998754
No 4
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=2.4e-28 Score=236.59 Aligned_cols=117 Identities=26% Similarity=0.416 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.++|++.+|+.+ ..|||||||||+|||+|+++|++|+|||||+|||+.++.++++.|+++.
T Consensus 103 ~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~ 177 (232)
T d2awna2 103 KKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177 (232)
T ss_dssp --CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 46678899999999999999998854 5799999999999999999999999999999999999999999999997
Q ss_pred h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+ .|+|||++||++ .++.++||||++|++|+++..|+++++.+
T Consensus 178 ~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 178 KRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 5 699999999995 89999999999999999999999998754
No 5
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=4.2e-28 Score=236.03 Aligned_cols=116 Identities=28% Similarity=0.411 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+++++.+++++++++.+||++.+|+. ++.|||||||||+|||+|+.+|++|||||||+|||+.++.++++.|+++
T Consensus 112 ~~~~~~~~~v~~~L~~vgL~~~~~~~-----~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l 186 (240)
T d3dhwc1 112 TPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186 (240)
T ss_dssp CCTTHHHHHHHHHHHHHSTTTTTSSC-----BSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHH
Confidence 35678889999999999999988874 5679999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033 81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122 (546)
Q Consensus 81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 122 (546)
.++ |.|||++||++ .++.++||||++|++|++++.|+++++
T Consensus 187 ~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 187 NRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred HhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 875 99999999994 889999999999999999999999975
No 6
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.95 E-value=7.4e-28 Score=233.73 Aligned_cols=116 Identities=28% Similarity=0.443 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++.+++++++++++.+||.+.+|+. +++|||||||||+|||+|+++|++|+|||||+|||+.++.++.+.+++++
T Consensus 99 ~~~~~~~~v~~~l~~~gl~~~~~~~-----~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~ 173 (240)
T d2onka1 99 ERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173 (240)
T ss_dssp CHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcHhhhhCC-----hhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHH
Confidence 5678889999999999999988885 45799999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++ |.|||++||++ .++.++||||++|++|+++..|+++++.
T Consensus 174 ~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~ 215 (240)
T d2onka1 174 REFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHh
Confidence 64 99999999995 8999999999999999999999999875
No 7
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=99.94 E-value=7.1e-27 Score=230.40 Aligned_cols=117 Identities=26% Similarity=0.393 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
++++.++++.++++.+||.+. .++ ++.+|||||||||+|||+|+.+|++|||||||+|||+.++.++++.|+++
T Consensus 121 ~~~~~~~~~~~~l~~~~l~~~~~~~-----~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l 195 (258)
T d1b0ua_ 121 SKHDARERALKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 195 (258)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHTS-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhhcc-----CcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhh
Confidence 567788999999999999764 455 34579999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+++|+|||++||++ .++.++||||++|++|++++.|+++++..
T Consensus 196 ~~~g~til~vtHdl-~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 196 AEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccCCceEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999995 89999999999999999999999998754
No 8
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=99.94 E-value=7e-27 Score=225.67 Aligned_cols=111 Identities=28% Similarity=0.428 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033 7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR 85 (546)
Q Consensus 7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~ 85 (546)
+++++++++.++|++..|+.+ ..|||||||||+|||+|+++|++|+|||||+|||+.++.++.+.|+++++ .|.
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~ 179 (229)
T d3d31a2 105 PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179 (229)
T ss_dssp HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 467999999999999998855 56999999999999999999999999999999999999999999999976 599
Q ss_pred EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
|||++||++ .++.++||||++|++|++++.|+++++.
T Consensus 180 tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 180 TVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp EEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999995 7999999999999999999999999874
No 9
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}
Probab=99.94 E-value=1.7e-26 Score=225.22 Aligned_cols=118 Identities=36% Similarity=0.412 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~ 81 (546)
++++.+++++++++.++|.+..++.++ +||||||||++||++|+++|++|+|||||+|||+.++.++.+++++++
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~ 180 (238)
T d1vpla_ 106 SSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180 (238)
T ss_dssp CHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 456778889999999999999988665 599999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHH
Q 009033 82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 125 (546)
Q Consensus 82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~ 125 (546)
++|+|||+++|++ .++..+||||++|++|++++.|+++++.+.
T Consensus 181 ~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 181 QEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999995 899999999999999999999999998754
No 10
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.94 E-value=1.4e-26 Score=224.07 Aligned_cols=111 Identities=26% Similarity=0.387 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 2 PWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 2 ~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+++++++.++++.+||.+ .+|+ ++.+|||||||||+|||+|+++|+||+|||||+|||+.++.++++.|+++
T Consensus 117 ~~~~~~~~~~~~l~~~~L~~~~~~~-----~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l 191 (230)
T d1l2ta_ 117 SGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191 (230)
T ss_dssp CHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhchhhhhhcC-----ChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 45677888999999999975 5666 45679999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009033 81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119 (546)
Q Consensus 81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~ 119 (546)
++ .|+|||++||++ .++ ++||||++|++|+++..|++
T Consensus 192 ~~~~g~tii~vTHd~-~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 192 NEEDGKTVVVVTHDI-NVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHTTCCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHhhCCEEEEECCCH-HHH-HhCCEEEEEECCEEEEeccC
Confidence 86 599999999996 555 89999999999999999864
No 11
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=99.93 E-value=1.2e-26 Score=226.55 Aligned_cols=114 Identities=23% Similarity=0.387 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033 4 SEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82 (546)
Q Consensus 4 ~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~ 82 (546)
+..++.++++++.+ +|++.+|+.++ .|||||||||+||++|+++|++|+|||||+|||+.++.++++.|+++++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~ 187 (240)
T d1ji0a_ 113 EGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhChHHHHhCchh-----hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh
Confidence 34566677788877 78888888665 5999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
+|+|||+++|+ ..++.++||||++|++|++++.|+++++.
T Consensus 188 ~g~til~~tH~-l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 188 EGTTILLVEQN-ALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCEEEEESC-HHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999 48999999999999999999999999874
No 12
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.93 E-value=2.3e-26 Score=226.59 Aligned_cols=115 Identities=22% Similarity=0.356 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033 4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83 (546)
Q Consensus 4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~ 83 (546)
++..++++++++.+++.+.+|+.++ .|||||||||+|||+|+++|++|+|||||+|||+.++.++++.|++++++
T Consensus 125 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~ 199 (254)
T d1g6ha_ 125 EEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199 (254)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcchhccCchh-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 3456788899999999999998765 59999999999999999999999999999999999999999999999989
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
|+|||+++|+. .++.++||||++|++|++++.|++++..+
T Consensus 200 g~til~vsHdl-~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 200 GITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp TCEEEEECSCC-STTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred CCEEEEEeCcH-HHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 99999999995 78999999999999999999999987543
No 13
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=3.6e-25 Score=215.14 Aligned_cols=113 Identities=28% Similarity=0.439 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCeEEEeCCCCCCCHHHHHHHHHHH
Q 009033 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFLDEPTSGLDSAAAFFVTQTL 77 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~-------~P~il~LDEPtsgLD~~~~~~v~~~L 77 (546)
.++++++++++.++|.+..++.+ +.|||||||||+||++|++ +|+||+|||||+|||+.++..+.+.+
T Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i 175 (231)
T d1l7vc_ 101 TRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 175 (231)
T ss_dssp TCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 34677899999999999888855 4699999999999999997 77999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033 78 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123 (546)
Q Consensus 78 ~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 123 (546)
++++++|+|||+++|++ .++.++|||+++|++|++++.|+++++.
T Consensus 176 ~~l~~~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 176 SALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp HHHHHTTCEEEECCCCH-HHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred HHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999995 7899999999999999999999998863
No 14
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=99.91 E-value=2.1e-24 Score=212.19 Aligned_cols=113 Identities=30% Similarity=0.384 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.++++++..++.+ -.|+.+|+ .+..|||||||||+|||+|+.+|+||+||||||+||+.+...+++.|+++
T Consensus 120 ~~i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l 198 (253)
T d3b60a1 120 EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 198 (253)
T ss_dssp HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHh
Confidence 34555555555433 35677775 56789999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+ |+|+|+++|++ +. .+.||+|++|++|++++.|+++++.+
T Consensus 199 ~~-~~Tvi~itH~l-~~-~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 199 QK-NRTSLVIAHRL-ST-IEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HT-TSEEEEECSCG-GG-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cc-CCEEEEEECCH-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 75 79999999996 44 47899999999999999999998764
No 15
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=1.1e-23 Score=205.26 Aligned_cols=101 Identities=31% Similarity=0.554 Sum_probs=90.7
Q ss_pred cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009033 20 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 99 (546)
Q Consensus 20 ~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~ 99 (546)
..-.++.+|. ....|||||||||+|||+|+.+|+||+||||||+||+.+..++++.|+++.+ |+|+|++||++ +. .
T Consensus 126 ~~~~~t~i~~-~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~-~ 201 (241)
T d2pmka1 126 REGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL-ST-V 201 (241)
T ss_dssp TTGGGSBCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSG-GG-G
T ss_pred hcchhhhcCC-CCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCH-HH-H
Confidence 4456777775 4678999999999999999999999999999999999999999999999975 89999999996 44 5
Q ss_pred hhcCeEEEEeCCeEEEecChhHHHH
Q 009033 100 ELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 100 ~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
+.+|+|++|++|+++..|+++++.+
T Consensus 202 ~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 202 KNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCEEEEEECCEEEEECCHHHHHh
Confidence 7899999999999999999998754
No 16
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=7.8e-24 Score=207.85 Aligned_cols=104 Identities=30% Similarity=0.398 Sum_probs=92.7
Q ss_pred CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCch
Q 009033 18 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSS 96 (546)
Q Consensus 18 gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~ 96 (546)
+|.+-.++.++. .+..||||||||++|||+|+.+|+||+||||||+||+.+..++++.|+++.+ .|+|+|+++|++ +
T Consensus 136 ~l~~g~~~~i~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~ 213 (251)
T d1jj7a_ 136 GLPQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL-S 213 (251)
T ss_dssp TSTTGGGCBCCS-SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-H
T ss_pred hccccchhhHhc-cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH-H
Confidence 444556777764 5678999999999999999999999999999999999999999999999976 589999999995 4
Q ss_pred HHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 97 EVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 97 ~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
. .+.||||++|++|+++..|+++++.+
T Consensus 214 ~-~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 214 L-VEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp H-HHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 57799999999999999999998764
No 17
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=99.89 E-value=1.7e-23 Score=205.66 Aligned_cols=113 Identities=28% Similarity=0.386 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033 8 TLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80 (546)
Q Consensus 8 ~~v~~~l~~lgL~-------~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l 80 (546)
+.+.++++..++. +-.||.+|+ ....||||||||++|||+|+.+|+||+||||||+||+.+...+++.|+++
T Consensus 122 ~~~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l 200 (255)
T d2hyda1 122 EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 200 (255)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 4455666666654 345778875 45679999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
.+ ++|+|++||++ +. .+.||+|++|++|+++..|+++++.+
T Consensus 201 ~~-~~TvI~itH~~-~~-~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 201 SK-DRTTLIVAHRL-ST-ITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp TT-TSEEEEECSSG-GG-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred hc-CCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 75 78999999997 44 57899999999999999999998765
No 18
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=99.89 E-value=5.7e-24 Score=207.73 Aligned_cols=102 Identities=32% Similarity=0.523 Sum_probs=90.9
Q ss_pred CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009033 19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 98 (546)
Q Consensus 19 L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i 98 (546)
+.+..++.+|. ....||||||||++|||+|+.+|+||+||||||+||+.++.++++.|+++++ |+|||+++|++ +.+
T Consensus 125 ~~~~~~~~i~~-~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~ 201 (242)
T d1mv5a_ 125 MPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRL-STI 201 (242)
T ss_dssp STTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSH-HHH
T ss_pred CcccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC-CCEEEEEECCH-HHH
Confidence 34456777775 4567999999999999999999999999999999999999999999999974 89999999996 444
Q ss_pred HhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 99 FELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 99 ~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
..||+|++|++|++++.|+++++.+
T Consensus 202 -~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 202 -VDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp -HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred -HhCCEEEEEECCEEEEECCHHHHHh
Confidence 6799999999999999999998765
No 19
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.87 E-value=1.7e-22 Score=201.50 Aligned_cols=104 Identities=25% Similarity=0.355 Sum_probs=88.9
Q ss_pred CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009033 18 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 97 (546)
Q Consensus 18 gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~ 97 (546)
.+.+..++.+|. ....|||||||||+|||+|+++|+||+|||||+|||+.+..++++.+......|+|+|+++|++ +
T Consensus 143 ~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~ 219 (281)
T d1r0wa_ 143 KFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--E 219 (281)
T ss_dssp TSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--H
T ss_pred hchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechH--H
Confidence 444556676764 4567999999999999999999999999999999999999999886544445689999999995 3
Q ss_pred HHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033 98 VFELFDRLYLLSGGKTVYFGETSAAFE 124 (546)
Q Consensus 98 i~~~~D~v~lL~~G~~v~~G~~~~~~~ 124 (546)
..+.||||++|++|+++++|+++++.+
T Consensus 220 ~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 220 HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 567899999999999999999998754
No 20
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.71 E-value=4.8e-18 Score=160.86 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033 8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87 (546)
Q Consensus 8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv 87 (546)
+.+.+.++.+++.+.. +.+ ..||||||||++||++|+.+|++++|||||+|||+.++.++++.|+++.+++.++
T Consensus 105 ~~~~~~l~~~~~~~~~-~~~-----~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ 178 (200)
T d1sgwa_ 105 NEIMDALESVEVLDLK-KKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178 (200)
T ss_dssp HHHHHHHHHTTCCCTT-SBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHcCCcccc-ccc-----CcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEE
Confidence 4567788888876543 334 4699999999999999999999999999999999999999999999998754455
Q ss_pred EEEecCCchHHHhhcCeEEEEeC
Q 009033 88 IASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 88 i~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
|+++|+. .++||.+..|++
T Consensus 179 ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 179 IISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp EEEESSC----CTTSSEEEEGGG
T ss_pred EEEEech----hhhcchhhheee
Confidence 5555542 257999998864
No 21
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=99.52 E-value=1.2e-14 Score=142.41 Aligned_cols=80 Identities=29% Similarity=0.352 Sum_probs=73.0
Q ss_pred cCCCCHHHHH------HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 009033 32 LRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 105 (546)
Q Consensus 32 ~~~lSgGer~------Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v 105 (546)
...+|||||| |+++|+++..+|++|+|||||++||+.....+++.|+++.++|.+||+|||+| ++.+.+|+|
T Consensus 199 ~~~lSgGe~~~~~la~~la~~~~l~~~~~llllDEp~~~Ld~~~~~~l~~~l~~~~~~~~qviv~TH~~--~~~~~~D~i 276 (292)
T g1f2t.1 199 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 276 (292)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhhcchHHHHHHHHHHHHHHhhhhcCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeecH--HHHHhCCEE
Confidence 4679999999 88999999999999999999999999999999999999998888999999996 577899999
Q ss_pred EEE--eCCeE
Q 009033 106 YLL--SGGKT 113 (546)
Q Consensus 106 ~lL--~~G~~ 113 (546)
+.+ .+|..
T Consensus 277 i~l~~~~g~~ 286 (292)
T g1f2t.1 277 IRISLENGSS 286 (292)
T ss_dssp EEEEEETTEE
T ss_pred EEEEecCCEE
Confidence 999 46654
No 22
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=99.22 E-value=9e-12 Score=123.38 Aligned_cols=78 Identities=29% Similarity=0.348 Sum_probs=69.7
Q ss_pred cCCCCHHHHHHHHHHHHHH------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 009033 32 LRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 105 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l~------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v 105 (546)
...||||||+++++|..|+ .+|+++++|||+++||+..+..+++.|+++++++.++|+|||+| ++...+|++
T Consensus 276 ~~~lS~Ge~~~~~la~~l~~~~~~~~~~~illiDEpe~~Lh~~~~~~l~~~l~~~~~~~~QviitTHs~--~~~~~~d~~ 353 (369)
T g1ii8.1 276 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 353 (369)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEECCSSSSCSHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGTSSEE
T ss_pred eeccchHHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEechH--HHHHhCCEE
Confidence 3569999999999987765 58899999999999999999999999999998877999999996 578899999
Q ss_pred EEEe--CC
Q 009033 106 YLLS--GG 111 (546)
Q Consensus 106 ~lL~--~G 111 (546)
+.+. +|
T Consensus 354 ~~v~~~~g 361 (369)
T g1ii8.1 354 IRISLENG 361 (369)
T ss_dssp EEEEECSS
T ss_pred EEEEEeCC
Confidence 9994 56
No 23
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.81 E-value=3.7e-09 Score=108.16 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009033 33 RGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 108 (546)
Q Consensus 33 ~~lSgGer~Rvsia~~l----~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL 108 (546)
..+|||||.++++|.-+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+| ++.+.+|+.+..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 56899999998887554 346679999999999999999999999999976667799999997 689999998765
No 24
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.06 E-value=5.1e-06 Score=80.92 Aligned_cols=77 Identities=31% Similarity=0.304 Sum_probs=65.1
Q ss_pred cCCCCHHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009033 32 LRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 107 (546)
Q Consensus 32 ~~~lSgGer~Rvsia~~l----~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l 107 (546)
...+|+|||+...++..+ ...|+++++|||-++|||.....+.+.|++.++ +.-||+|||.| ++.+.+|++..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH--HHHHhcccEEE
Confidence 456899999998887664 346789999999999999999999999999976 47899999987 57789999976
Q ss_pred E--eCC
Q 009033 108 L--SGG 111 (546)
Q Consensus 108 L--~~G 111 (546)
+ .+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4 455
No 25
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=97.97 E-value=9.1e-07 Score=79.12 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033 34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK 112 (546)
Q Consensus 34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 112 (546)
.+|+|+++|..+++++..+|+++++|||.. +........+.+.++-+ .+.|+|+++|+. ....++|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~--~~~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGK--MELFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCST--TGGGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCc--cchhhHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCCE
Confidence 468999999999999999999999999844 33345566667766554 589999999984 4577899999999999
Q ss_pred EEEec
Q 009033 113 TVYFG 117 (546)
Q Consensus 113 ~v~~G 117 (546)
++.-+
T Consensus 157 i~~v~ 161 (178)
T d1ye8a1 157 LIELT 161 (178)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 87654
No 26
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus [TaxId: 2261]}
Probab=97.16 E-value=0.0016 Score=63.17 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=63.2
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE
Q 009033 31 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 106 (546)
Q Consensus 31 ~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~ 106 (546)
....||+||+....++..+. .+|.++++|||-.+||+.....+.+.+++++++ .=+|+|||.| .+.+..|+++
T Consensus 221 ~~~~ls~~~~~l~~l~~~~~~~~~~~~~~~~ide~e~~L~~~~~~~l~~~l~~~~~~-~Q~iitTh~~--~~~~~~~~l~ 297 (329)
T g1xew.1 221 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKII 297 (329)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHHHHHTTT-SEEEEECCCH--HHHHHCSEEE
T ss_pred ehhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhHHhhcCHHHHHHHHHHHHHhccC-CeEEEEeCCH--HHHHhhHhhc
Confidence 34568999998877765553 688999999999999999999999999998764 5688999986 5678899998
Q ss_pred EEe
Q 009033 107 LLS 109 (546)
Q Consensus 107 lL~ 109 (546)
.+.
T Consensus 298 ~i~ 300 (329)
T g1xew.1 298 GVS 300 (329)
T ss_dssp EEE
T ss_pred CEe
Confidence 873
No 27
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=92.56 E-value=0.12 Score=47.21 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033 37 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELF 102 (546)
Q Consensus 37 gGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~ 102 (546)
..|-+|++-....+++.+++++||+.+|-|+.....+.. .++.|.+.+..++++||.. ++.++.
T Consensus 99 ~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l~ 163 (224)
T d1ewqa2 99 MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTALG 163 (224)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTCC
T ss_pred HHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhhh
Confidence 467788877777778889999999999999998887755 5667887788999999984 565543
No 28
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=89.66 E-value=0.27 Score=45.10 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCEEEEEecCC
Q 009033 37 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRD-GRTVIASIHQP 94 (546)
Q Consensus 37 gGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~~l~~~-g~tvi~~~H~p 94 (546)
..|-+|++=...-+++.+++++||+-+|=|+.....+... ++.+..+ +..+++++|..
T Consensus 105 ~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 105 MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 5677887776677888889999999999999999888654 7778654 56888888874
No 29
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=82.67 E-value=0.53 Score=40.38 Aligned_cols=67 Identities=21% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHHHHHHhC--CCeEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033 43 VSIALEILMR--PRLLFLDEPTS--GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110 (546)
Q Consensus 43 vsia~~l~~~--P~il~LDEPts--gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~ 110 (546)
+..|++.+.+ .++++|||-.. .++-....+++++|++ ..++.-+|+|-+.++.++.+.+|-|.-|+.
T Consensus 83 ~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 83 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 4556655544 69999999877 3344556678887765 346789999999999999999999987754
No 30
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=49.36 E-value=15 Score=32.78 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=28.7
Q ss_pred HhCCCeEEEeCCC-----CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 009033 50 LMRPRLLFLDEPT-----SGL--DSAAAFFVTQTLRCLSR-DGRTVIASIHQ 93 (546)
Q Consensus 50 ~~~P~il~LDEPt-----sgL--D~~~~~~v~~~L~~l~~-~g~tvi~~~H~ 93 (546)
-.+|+++++|--+ .+- +......+++.|+++|+ .|++|++++|-
T Consensus 145 ~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp TTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ccCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeeccc
Confidence 3479999999531 111 11345667888999986 58888877773
No 31
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=42.70 E-value=29 Score=30.43 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=34.8
Q ss_pred HHHhCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 009033 48 EILMRPRLLFLDEPTS-----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQ 93 (546)
Q Consensus 48 ~l~~~P~il~LDEPts-----gLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~ 93 (546)
.-..+|+++++|.-+. --|.....++++.|+.+++ .|++||++.|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999996543 2266677788888998886 58888888775
No 32
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=40.71 E-value=20 Score=31.83 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=31.6
Q ss_pred CCCCHHHH-HHHH--HHHHHHhCCCeEEEeCC-----CCCCCHHHHHHHHHHHHHHHh----CC--CEEEEEecCC
Q 009033 33 RGISGGER-RRVS--IALEILMRPRLLFLDEP-----TSGLDSAAAFFVTQTLRCLSR----DG--RTVIASIHQP 94 (546)
Q Consensus 33 ~~lSgGer-~Rvs--ia~~l~~~P~il~LDEP-----tsgLD~~~~~~v~~~L~~l~~----~g--~tvi~~~H~p 94 (546)
.|.+++.. +++. +..+--..|.|||+||- ...-++.....+.+.|..+-. .+ ..||.+|.+|
T Consensus 78 ~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~ 153 (246)
T d1d2na_ 78 IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK 153 (246)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH
T ss_pred ccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCCh
Confidence 34677664 3342 33344456899999993 332222222334444333322 22 3566688775
No 33
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=39.83 E-value=61 Score=24.71 Aligned_cols=72 Identities=11% Similarity=0.248 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033 6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85 (546)
Q Consensus 6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~ 85 (546)
.++.+.+.++..|.+-.. + -+.|+.- +...+ -.+|+++++|=-.-+.|- .++.+.+++...+-.
T Consensus 13 ~~~~l~~~L~~~g~~v~~-~---------a~~~~~a-l~~~~--~~~~dliilD~~mp~~~G---~e~~~~ir~~~~~~p 76 (118)
T d1u0sy_ 13 MRMMLKDIITKAGYEVAG-E---------ATNGREA-VEKYK--ELKPDIVTMDITMPEMNG---IDAIKEIMKIDPNAK 76 (118)
T ss_dssp HHHHHHHHHHHTTCEEEE-E---------ESSHHHH-HHHHH--HHCCSEEEEECSCGGGCH---HHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHcCCceEE-E---------ECCHHHH-HHHHH--hccCCEEEEecCCCCCCH---HHHHHHHHHhCCCCc
Confidence 455667788888775321 1 1344332 22222 268999999977766654 456666666544334
Q ss_pred EEEEEecC
Q 009033 86 TVIASIHQ 93 (546)
Q Consensus 86 tvi~~~H~ 93 (546)
.|++|.|.
T Consensus 77 vi~ls~~~ 84 (118)
T d1u0sy_ 77 IIVCSAMG 84 (118)
T ss_dssp EEEEECTT
T ss_pred EEEEEccC
Confidence 55556665
No 34
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}
Probab=38.21 E-value=19 Score=30.41 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033 70 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 70 ~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
..++++.++...+.|..||.+|..+.+.+.+++|.++.+..+
T Consensus 92 t~~~i~~~~~ak~~g~~iI~IT~~~~s~La~~ad~~i~i~~~ 133 (186)
T d1m3sa_ 92 TKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGS 133 (186)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCC
T ss_pred hhhhHHHHHHHHHCCCCEEEEecCCCchhhHhCCEEEEeCCC
Confidence 367888888888899999999998889999999999887543
No 35
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.97 E-value=41 Score=29.90 Aligned_cols=56 Identities=25% Similarity=0.246 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCeEEEeCCCCCC---------CHHHHHHHHHH-HHHH---H-hCCCEEEEEecCCc
Q 009033 40 RRRVSIALEILMRPRLLFLDEPTSGL---------DSAAAFFVTQT-LRCL---S-RDGRTVIASIHQPS 95 (546)
Q Consensus 40 r~Rvsia~~l~~~P~il~LDEPtsgL---------D~~~~~~v~~~-L~~l---~-~~g~tvi~~~H~p~ 95 (546)
+-|-.+..+-...|.|+++||--.=+ ......++.+. +..+ . +.+.-+|.|+++|.
T Consensus 88 ~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 157 (265)
T d1r7ra3 88 NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 157 (265)
T ss_dssp HHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCT
T ss_pred HHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCch
Confidence 33344666777899999999964322 22233333333 3333 2 24678999999973
No 36
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.15 E-value=32 Score=29.01 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033 70 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111 (546)
Q Consensus 70 ~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 111 (546)
..++++.++...+.|..||.+|..+.+.+.+++|.++....+
T Consensus 95 t~~~i~~~~~ak~~g~~vI~IT~~~~s~l~~~ad~~l~i~~~ 136 (192)
T d1vima_ 95 TTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGK 136 (192)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSS
T ss_pred chhhHHHHHHHHhhcccceeeeeccccccccccceEEEecCC
Confidence 367888888888889999999888889999999999887644
No 37
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=26.55 E-value=35 Score=29.15 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=41.4
Q ss_pred hCCCeEEEeCCCC---CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC---------chHHHhhcCeEEEEe
Q 009033 51 MRPRLLFLDEPTS---GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP---------SSEVFELFDRLYLLS 109 (546)
Q Consensus 51 ~~P~il~LDEPts---gLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p---------~~~i~~~~D~v~lL~ 109 (546)
.+|++++.|--+. +.+.......+..|.++++ .|.+++++.|.. ...+.+.+|-++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4789999997554 4466666666666666654 689999988852 123567889998885
No 38
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=25.85 E-value=74 Score=27.09 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=40.1
Q ss_pred HHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009033 49 ILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 98 (546)
Q Consensus 49 l~~~P~il~LDEPts-gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i 98 (546)
.+.+.++|++|+-=. .-+......+.+++..+.+.|+.+|+++..|..+.
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhc
Confidence 356889999998744 23577888899999999888999999999876543
No 39
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.30 E-value=23 Score=29.77 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=31.6
Q ss_pred cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCC
Q 009033 22 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63 (546)
Q Consensus 22 ~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPts 63 (546)
+.+..++ .|-..+..||+++.-|..++.=..+=|+||||+
T Consensus 136 ~~~~Vit--vPa~f~~~qr~~~~~Aa~~AGl~~~~li~EP~A 175 (185)
T d1bupa1 136 VTNAVVT--VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 175 (185)
T ss_dssp CCEEEEE--ECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred cCcEEEE--ECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHH
Confidence 4444454 355689999999999999988777889999986
No 40
>d1lrza2 d.108.1.4 (A:1-165) Methicillin resistance protein FemA {Staphylococcus aureus [TaxId: 1280]}
Probab=24.15 E-value=46 Score=27.54 Aligned_cols=62 Identities=15% Similarity=0.226 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCC
Q 009033 65 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPC 133 (546)
Q Consensus 65 LD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~ 133 (546)
-|......+++.|++.+++...+.+-+ +| ..+++..| .+|+.+...+.+++++.++++|+..
T Consensus 81 ~d~~ll~~~l~~L~~~akk~~a~~l~i-~P-~v~~~~~~-----~dg~~~~~~~~~~~i~~l~~lG~~h 142 (165)
T d1lrza2 81 ENQELVHFFFNELSKYVKKHRCLYLHI-DP-YLPYQYLN-----HDGEITGNAGNDWFFDKMSNLGFEH 142 (165)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTEEEEEE-CC-CCEEEEEC-----TTSCEEEECSCTHHHHHHHHTTCEE
T ss_pred cCHHHHHHHHHHHHHHHHHCCEEEEEe-cc-chhhhccc-----cCCcccCCCCcHHHHHHHHHCCCEe
Confidence 466667778999999998766665555 45 23334444 4899988777788999999999864
No 41
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=21.66 E-value=1.6e+02 Score=22.31 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033 5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83 (546)
Q Consensus 5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~ 83 (546)
..++.+.+.++..|...+... =||-|-... .--.+|+++++|=-.-+.|- .++.+.||+... .
T Consensus 15 ~~r~~i~~~L~~~g~~~v~~a---------~~g~~a~~~----~~~~~~dlii~D~~mP~~dG---~el~~~ir~~~~~~ 78 (128)
T d1jbea_ 15 TMRRIVRNLLKELGFNNVEEA---------EDGVDALNK----LQAGGYGFVISDWNMPNMDG---LELLKTIRADGAMS 78 (128)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE---------SSHHHHHHH----HTTCCCCEEEEESCCSSSCH---HHHHHHHHC--CCT
T ss_pred HHHHHHHHHHHHCCCcEEEEe---------cCchHHHHH----HhcCCCCEEEEecccccCCH---HHHHHHHHhCccCC
Confidence 345667788888887543221 134443221 11368999999998888885 566666665432 3
Q ss_pred CCEEEE-EecC
Q 009033 84 GRTVIA-SIHQ 93 (546)
Q Consensus 84 g~tvi~-~~H~ 93 (546)
+..||+ |.|.
T Consensus 79 ~~piI~lt~~~ 89 (128)
T d1jbea_ 79 ALPVLMVTAEA 89 (128)
T ss_dssp TCCEEEEESSC
T ss_pred CCcEEEEECcC
Confidence 455554 4444
No 42
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=20.39 E-value=78 Score=27.68 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=25.1
Q ss_pred HHhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH---h-CCCEEEEEecCC
Q 009033 49 ILMRPRLLFLDEP----------TSGLDSAAAFFVTQTLRCLS---R-DGRTVIASIHQP 94 (546)
Q Consensus 49 l~~~P~il~LDEP----------tsgLD~~~~~~v~~~L~~l~---~-~g~tvi~~~H~p 94 (546)
--..|.||++||- ..+-+......+-..|..+. . .+..||.+|.+|
T Consensus 98 ~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~ 157 (247)
T d1ixza_ 98 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 157 (247)
T ss_dssp TTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred HHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 3467899999984 22334443333444444443 2 344566788876
Done!