Query 009034
Match_columns 546
No_of_seqs 342 out of 2117
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 17:19:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 4E-25 1.4E-29 203.3 13.3 155 42-215 2-157 (163)
2 2anr_A Neuro-oncological ventr 99.9 1.4E-25 4.8E-30 209.3 10.0 161 40-216 3-177 (178)
3 2jzx_A Poly(RC)-binding protei 99.9 9.5E-25 3.2E-29 200.1 10.4 155 41-214 3-159 (160)
4 1j4w_A FUSE binding protein; s 99.9 4.5E-24 1.5E-28 198.3 11.8 156 42-212 2-174 (174)
5 2jvz_A KH type-splicing, FAR u 99.9 8.4E-24 2.9E-28 194.6 10.4 154 43-214 2-160 (164)
6 3krm_A Insulin-like growth fac 99.9 4E-23 1.4E-27 189.9 13.2 154 284-446 3-158 (163)
7 2anr_A Neuro-oncological ventr 99.9 2.2E-23 7.7E-28 194.3 11.6 159 281-445 3-176 (178)
8 3n89_A Defective in GERM LINE 99.9 1.3E-22 4.4E-27 205.8 12.4 230 135-443 25-260 (376)
9 1j4w_A FUSE binding protein; s 99.9 1.6E-22 5.6E-27 187.8 12.1 157 284-442 3-174 (174)
10 2jzx_A Poly(RC)-binding protei 99.9 1.9E-22 6.5E-27 184.7 10.6 154 282-444 3-159 (160)
11 2jvz_A KH type-splicing, FAR u 99.9 5.2E-22 1.8E-26 182.6 13.2 154 284-445 2-161 (164)
12 3n89_A Defective in GERM LINE 99.8 4.8E-20 1.6E-24 187.0 15.2 290 40-438 27-335 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 2.8E-18 9.7E-23 153.4 8.5 137 283-444 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 2.8E-17 9.6E-22 146.9 9.1 137 42-214 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.6 1.7E-15 5.7E-20 144.0 8.0 142 44-216 35-193 (219)
16 2hh2_A KH-type splicing regula 99.5 5.8E-15 2E-19 124.9 6.8 74 370-445 7-80 (107)
17 1dtj_A RNA-binding neurooncolo 99.5 1.2E-14 4E-19 115.4 6.8 73 370-444 3-75 (76)
18 2axy_A Poly(RC)-binding protei 99.5 9.6E-15 3.3E-19 114.8 5.6 70 369-445 4-73 (73)
19 2e3u_A PH-DIM2P, hypothetical 99.5 4.3E-14 1.5E-18 134.3 9.8 141 285-445 35-192 (219)
20 1zzk_A Heterogeneous nuclear r 99.5 3.8E-14 1.3E-18 114.0 8.0 73 368-445 5-77 (82)
21 2p2r_A Poly(RC)-binding protei 99.5 1.6E-14 5.4E-19 114.6 5.6 72 369-445 4-75 (76)
22 1wvn_A Poly(RC)-binding protei 99.5 2.5E-14 8.6E-19 115.1 5.9 72 369-445 5-76 (82)
23 1ec6_A RNA-binding protein NOV 99.5 2.6E-14 9E-19 116.4 4.8 78 370-449 3-80 (87)
24 1j5k_A Heterogeneous nuclear r 99.4 5.4E-14 1.9E-18 115.0 5.5 74 367-445 11-84 (89)
25 2opv_A KHSRP protein; KH domai 99.4 1.6E-13 5.6E-18 111.1 8.0 74 368-444 12-85 (85)
26 2hh3_A KH-type splicing regula 99.4 1.1E-13 3.8E-18 116.5 7.0 72 370-446 11-82 (106)
27 1x4n_A FAR upstream element bi 99.4 9.6E-14 3.3E-18 114.2 6.5 73 368-445 13-85 (92)
28 2dgr_A Ring finger and KH doma 99.4 4.9E-14 1.7E-18 113.1 4.1 69 368-444 8-76 (83)
29 1x4m_A FAR upstream element bi 99.4 1.2E-13 4E-18 114.2 5.3 76 367-445 12-87 (94)
30 2axy_A Poly(RC)-binding protei 99.4 1.3E-13 4.4E-18 108.3 5.0 71 138-215 3-73 (73)
31 1tua_A Hypothetical protein AP 99.4 2E-13 6.8E-18 126.5 5.7 141 45-215 6-161 (191)
32 1zzk_A Heterogeneous nuclear r 99.4 7.4E-13 2.5E-17 106.5 8.2 72 40-124 4-75 (82)
33 2p2r_A Poly(RC)-binding protei 99.4 3.3E-13 1.1E-17 107.0 5.2 71 41-124 3-73 (76)
34 1wvn_A Poly(RC)-binding protei 99.4 5.2E-13 1.8E-17 107.4 6.1 72 40-124 3-74 (82)
35 1we8_A Tudor and KH domain con 99.4 7.2E-13 2.5E-17 111.5 7.2 75 369-446 14-88 (104)
36 1dtj_A RNA-binding neurooncolo 99.4 6.1E-13 2.1E-17 105.4 6.3 74 139-214 2-75 (76)
37 2opv_A KHSRP protein; KH domai 99.3 2.7E-12 9.1E-17 103.9 8.5 75 137-214 11-85 (85)
38 1j5k_A Heterogeneous nuclear r 99.3 1E-12 3.5E-17 107.3 5.8 72 40-124 11-82 (89)
39 1x4n_A FAR upstream element bi 99.3 2.4E-12 8.4E-17 105.7 7.9 72 40-124 12-83 (92)
40 2ctm_A Vigilin; K homology typ 99.3 2.7E-12 9.1E-17 105.9 7.3 73 368-446 15-87 (95)
41 1tua_A Hypothetical protein AP 99.3 4.1E-12 1.4E-16 117.6 9.3 140 285-444 5-160 (191)
42 2cte_A Vigilin; K homology typ 99.3 1.8E-12 6.2E-17 106.9 5.9 71 369-446 16-86 (94)
43 2ctl_A Vigilin; K homology typ 99.3 3.8E-12 1.3E-16 105.4 7.6 73 369-445 16-88 (97)
44 1x4m_A FAR upstream element bi 99.3 1.5E-12 5E-17 107.5 4.9 77 136-215 11-87 (94)
45 1ec6_A RNA-binding protein NOV 99.3 1.4E-12 4.8E-17 106.1 4.6 74 140-215 3-76 (87)
46 1vig_A Vigilin; RNA-binding pr 99.3 1.5E-12 5.3E-17 101.5 4.5 67 369-442 4-70 (71)
47 2dgr_A Ring finger and KH doma 99.3 9.6E-13 3.3E-17 105.5 3.4 71 136-214 6-76 (83)
48 2hh2_A KH-type splicing regula 99.3 4E-12 1.4E-16 107.4 5.9 73 141-215 8-80 (107)
49 1we8_A Tudor and KH domain con 99.3 2.9E-12 1E-16 107.8 4.8 81 136-219 11-91 (104)
50 2hh3_A KH-type splicing regula 99.2 5.3E-12 1.8E-16 106.2 5.6 70 140-214 11-80 (106)
51 2ctk_A Vigilin; K homology typ 99.2 1.1E-11 3.6E-16 104.1 5.9 71 369-446 16-86 (104)
52 2ctm_A Vigilin; K homology typ 99.2 1.4E-11 4.9E-16 101.5 5.9 74 135-214 12-85 (95)
53 1vig_A Vigilin; RNA-binding pr 99.2 1.5E-11 5.1E-16 95.8 4.5 68 138-212 3-70 (71)
54 2cte_A Vigilin; K homology typ 99.2 2E-11 6.7E-16 100.7 5.3 74 135-215 12-85 (94)
55 2ctl_A Vigilin; K homology typ 99.2 3.7E-11 1.3E-15 99.5 6.5 73 138-214 15-87 (97)
56 2ctj_A Vigilin; K homology typ 99.1 6.3E-11 2.2E-15 97.4 5.7 71 368-445 15-86 (95)
57 2ctf_A Vigilin; K homology typ 99.1 2.5E-10 8.4E-15 95.3 7.2 68 369-446 26-94 (102)
58 2ctk_A Vigilin; K homology typ 99.0 1.4E-10 4.8E-15 97.2 4.8 70 138-214 15-84 (104)
59 2ctj_A Vigilin; K homology typ 99.0 3.2E-10 1.1E-14 93.3 4.5 73 135-214 12-85 (95)
60 2ctf_A Vigilin; K homology typ 98.9 1E-09 3.5E-14 91.5 6.0 66 139-214 26-92 (102)
61 2cpq_A FragIle X mental retard 98.9 1E-09 3.5E-14 88.5 4.1 64 368-441 13-78 (91)
62 2cpq_A FragIle X mental retard 98.6 1.7E-08 5.7E-13 81.5 4.3 65 136-210 11-77 (91)
63 1k1g_A SF1-BO isoform; splicin 98.6 9.4E-08 3.2E-12 83.1 7.7 76 369-444 6-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.5 1.7E-07 5.7E-12 79.9 8.0 77 369-445 11-100 (119)
65 1k1g_A SF1-BO isoform; splicin 98.4 6.1E-07 2.1E-11 78.0 7.7 77 138-214 5-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.3 1.4E-06 4.9E-11 74.1 7.7 78 137-214 9-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.2 4.8E-07 1.6E-11 79.0 2.7 75 370-444 2-101 (140)
68 3u1k_A Polyribonucleotide nucl 98.1 2.8E-06 9.6E-11 92.6 6.2 95 107-212 534-629 (630)
69 2bl5_A MGC83862 protein, quaki 98.0 3.9E-06 1.3E-10 73.3 4.7 76 140-215 2-102 (140)
70 3u1k_A Polyribonucleotide nucl 97.7 1.3E-05 4.3E-10 87.5 3.5 63 369-442 566-629 (630)
71 3v69_A Protein filia; RNA-bind 97.7 6.8E-05 2.3E-09 64.0 6.6 68 371-444 57-124 (140)
72 4aid_A Polyribonucleotide nucl 97.5 2.9E-05 1E-09 85.5 2.9 97 107-214 537-634 (726)
73 2cxc_A NUSA; transcription ter 97.5 6E-05 2E-09 66.2 4.0 104 284-406 36-139 (144)
74 2cxc_A NUSA; transcription ter 97.4 7.5E-05 2.6E-09 65.5 3.2 99 43-176 36-139 (144)
75 4aid_A Polyribonucleotide nucl 97.1 0.00014 4.9E-09 80.1 1.8 65 370-445 570-635 (726)
76 3v69_A Protein filia; RNA-bind 97.0 0.00098 3.4E-08 56.9 5.9 67 142-214 58-124 (140)
77 2asb_A Transcription elongatio 95.9 0.0091 3.1E-07 56.9 5.8 97 293-409 126-223 (251)
78 1k0r_A NUSA; two component arr 95.8 0.0058 2E-07 61.6 4.4 93 52-179 249-346 (366)
79 1k0r_A NUSA; two component arr 95.8 0.01 3.5E-07 59.8 5.9 97 293-409 249-346 (366)
80 3cdi_A Polynucleotide phosphor 95.7 0.0027 9.1E-08 70.3 1.6 96 107-213 527-623 (723)
81 2asb_A Transcription elongatio 95.7 0.0094 3.2E-07 56.8 5.0 94 52-180 126-224 (251)
82 1e3p_A Guanosine pentaphosphat 95.2 0.0022 7.6E-08 71.2 -1.2 94 107-212 566-660 (757)
83 1hh2_P NUSA, N utilization sub 94.4 0.055 1.9E-06 54.3 6.4 93 294-407 246-340 (344)
84 3cdi_A Polynucleotide phosphor 94.0 0.01 3.5E-07 65.7 0.1 63 370-443 560-623 (723)
85 1hh2_P NUSA, N utilization sub 93.5 0.071 2.4E-06 53.5 5.4 92 52-178 245-341 (344)
86 1e3p_A Guanosine pentaphosphat 92.7 0.0061 2.1E-07 67.7 -4.2 62 370-442 598-660 (757)
87 2pt7_G HP1451, hypothetical pr 73.7 1.2 4.2E-05 39.0 1.7 29 44-72 34-62 (152)
88 1wh9_A 40S ribosomal protein S 61.6 2.7 9.4E-05 33.5 1.3 28 45-72 37-64 (92)
89 1wh9_A 40S ribosomal protein S 58.6 2.6 8.7E-05 33.7 0.6 29 370-398 35-63 (92)
90 2pt7_G HP1451, hypothetical pr 49.4 9.4 0.00032 33.4 2.7 30 285-314 34-63 (152)
91 3ul0_C Nuclear CAP-binding pro 41.9 26 0.00089 19.9 2.8 21 7-29 2-23 (26)
92 3gku_A Probable RNA-binding pr 40.0 8 0.00028 36.1 0.8 32 45-76 94-125 (225)
93 2kl8_A OR15; structural genomi 39.7 64 0.0022 23.4 5.3 28 418-445 40-67 (85)
94 3iev_A GTP-binding protein ERA 29.1 17 0.00057 35.5 1.2 38 368-405 238-284 (308)
95 4hhu_A OR280; engineered prote 29.1 2.4E+02 0.008 23.1 11.9 98 86-215 41-149 (170)
96 2z0s_A Probable exosome comple 28.9 91 0.0031 29.0 6.2 45 46-96 151-195 (235)
97 2ba0_A Archeal exosome RNA bin 28.1 66 0.0023 29.9 5.1 50 372-432 138-187 (229)
98 3j20_C 30S ribosomal protein S 28.1 20 0.00069 33.0 1.4 28 45-72 42-69 (210)
99 3u5c_D RP13, YS3, 40S ribosoma 28.1 17 0.00058 34.1 0.9 28 371-398 45-72 (240)
100 2xzm_C KH domain containing pr 27.8 22 0.00076 33.5 1.7 28 45-72 49-76 (243)
101 3j20_C 30S ribosomal protein S 26.8 17 0.00058 33.5 0.6 35 371-405 41-82 (210)
102 3u5c_D RP13, YS3, 40S ribosoma 26.6 17 0.00059 34.1 0.7 28 45-72 46-73 (240)
103 2xzm_C KH domain containing pr 26.4 21 0.00071 33.6 1.2 29 370-398 47-75 (243)
104 2ba0_A Archeal exosome RNA bin 24.8 87 0.003 29.0 5.2 59 142-211 138-196 (229)
105 3iz6_B 40S ribosomal protein S 24.8 18 0.0006 33.8 0.4 29 44-72 45-73 (227)
106 2pk2_A Cyclin-T1, protein TAT; 24.3 19 0.00064 36.2 0.5 22 197-218 79-100 (358)
107 4hhu_A OR280; engineered prote 24.3 1.5E+02 0.005 24.3 5.7 45 392-445 105-149 (170)
108 3iz6_B 40S ribosomal protein S 24.2 17 0.00059 33.8 0.2 28 371-398 45-72 (227)
109 3r8n_C 30S ribosomal protein S 22.9 18 0.00061 33.3 0.0 27 45-71 63-89 (206)
110 2z0s_A Probable exosome comple 22.8 1E+02 0.0034 28.7 5.3 50 372-432 150-200 (235)
111 3dhx_A Methionine import ATP-b 22.0 1.1E+02 0.0036 24.5 4.6 51 160-210 36-87 (106)
112 3iev_A GTP-binding protein ERA 21.6 36 0.0012 33.1 1.9 36 43-78 240-284 (308)
113 2zkq_c 40S ribosomal protein S 21.2 21 0.00071 33.6 0.1 29 44-72 45-73 (243)
114 3r8n_C 30S ribosomal protein S 21.0 18 0.0006 33.3 -0.4 34 372-405 63-100 (206)
115 3i1m_C 30S ribosomal protein S 21.0 20 0.0007 33.5 -0.0 27 45-71 64-90 (233)
116 3ukx_C Bimax2 peptide; arm rep 20.9 81 0.0028 18.2 2.5 22 6-28 5-26 (28)
117 2kl8_A OR15; structural genomi 20.7 1.9E+02 0.0066 20.8 5.1 29 188-216 40-68 (85)
118 3gku_A Probable RNA-binding pr 20.6 19 0.00066 33.5 -0.3 33 141-173 93-125 (225)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.92 E-value=4e-25 Score=203.27 Aligned_cols=155 Identities=24% Similarity=0.393 Sum_probs=129.8
Q ss_pred ceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCC-CCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHH
Q 009034 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET-VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (546)
Q Consensus 42 ~~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~-~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (546)
.-+++|+||.+++|.||||+|++|++|+++|+|+|+|++. .+++.+|+|+|+|.++. +.+|..+++
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~-------------v~~A~~~I~ 68 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA-------------QFKAQGRIY 68 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH-------------HHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 4578999999999999999999999999999999999875 67889999999998765 567777787
Q ss_pred HHHHHhhhcCCCCCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHH
Q 009034 121 DRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASV 200 (546)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~ 200 (546)
+.+.+.... .......++++|+||.+++|+||||+|++|++|+++|||+|.|.++ ..|. ...++.|+|+|++++
T Consensus 69 ~~~~e~~~~---~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~--~~~~~~v~I~G~~~~ 142 (163)
T 3krm_A 69 GKLKEENFF---GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPD--ENDQVIVKIIGHFYA 142 (163)
T ss_dssp HHHHHTTSS---CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCC--TTSEEEEEEEECHHH
T ss_pred HHHhccccc---ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCC--CCCceEEEEEeCHHH
Confidence 766554322 1123456788999999999999999999999999999999999764 3343 134458999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 009034 201 VKKALCQIASRLHDN 215 (546)
Q Consensus 201 v~~A~~~I~~~l~~~ 215 (546)
|.+|+.+|.+++.+.
T Consensus 143 v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 143 SQMAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999763
No 2
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=1.4e-25 Score=209.30 Aligned_cols=161 Identities=24% Similarity=0.419 Sum_probs=128.2
Q ss_pred CCceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCC---CCCCCceEEEEecCCccccccccCcccCCHHHHHH
Q 009034 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET---VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDAL 116 (546)
Q Consensus 40 ~~~~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~---~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~ 116 (546)
+++++++|+||.+++|.||||+|++|++|+++|+|+|+|++. .+++.+|+|+|+|..++ +.+|.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~-------------v~~A~ 69 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA-------------LNAVH 69 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH-------------HHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH-------------HHHHH
Confidence 567999999999999999999999999999999999999754 46889999999998665 34555
Q ss_pred HHHHHHHHHhhhcCC-----------CCCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCccc
Q 009034 117 FKVHDRVIAEELRGD-----------EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCA 185 (546)
Q Consensus 117 ~~i~~~i~~~~~~~~-----------~~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~ 185 (546)
..+.+.+.+...... .........+++|+||.+++|+||||+|++|++|+++|||+|.|.++...+
T Consensus 70 ~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~--- 146 (178)
T 2anr_A 70 GFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI--- 146 (178)
T ss_dssp HHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------
T ss_pred HHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---
Confidence 555554432110000 000112357899999999999999999999999999999999998754322
Q ss_pred CCCCceEEEEcCHHHHHHHHHHHHHHHhcCC
Q 009034 186 LRSDELVQISGEASVVKKALCQIASRLHDNP 216 (546)
Q Consensus 186 ~~~dr~v~I~G~~~~v~~A~~~I~~~l~~~~ 216 (546)
.+.++.|+|+|+.++|.+|+.+|.++|+++|
T Consensus 147 ~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 147 NLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp -CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 3678999999999999999999999999875
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=9.5e-25 Score=200.10 Aligned_cols=155 Identities=29% Similarity=0.480 Sum_probs=129.1
Q ss_pred CceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHH
Q 009034 41 EDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (546)
Q Consensus 41 ~~~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (546)
..++++|+||.+++|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|+.++ +.+|..++.
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~-------------v~~A~~~I~ 67 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA-------------IFKAFAMII 67 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH-------------HHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH-------------HHHHHHHHH
Confidence 45789999999999999999999999999999999999876 678999999998665 467777777
Q ss_pred HHHHHhhhcCCC--CCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCH
Q 009034 121 DRVIAEELRGDE--DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198 (546)
Q Consensus 121 ~~i~~~~~~~~~--~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~ 198 (546)
+.+.+....... .......++++|+||.+++|+||||+|++|++|+++|||+|.|.++ ..|. +.++.|+|+|++
T Consensus 68 ~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~~---~~~~~v~I~G~~ 143 (160)
T 2jzx_A 68 DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLPN---STERAITIAGIP 143 (160)
T ss_dssp HHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CSTT---CCEEEEEEEECH
T ss_pred HHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCCC---CCceEEEEEcCH
Confidence 766543321111 0122346899999999999999999999999999999999999763 3343 678999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 009034 199 SVVKKALCQIASRLHD 214 (546)
Q Consensus 199 ~~v~~A~~~I~~~l~~ 214 (546)
++|.+|+.+|.+++.+
T Consensus 144 ~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 144 QSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998865
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=4.5e-24 Score=198.32 Aligned_cols=156 Identities=24% Similarity=0.385 Sum_probs=122.9
Q ss_pred ceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHHH
Q 009034 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHD 121 (546)
Q Consensus 42 ~~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~ 121 (546)
..+++|+||.+++|.||||+|++|++|+++|+|+|+|.+..+++++|+|+|+|++++ +.+|+.+|.+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~~ 68 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR-------------AQHAAEIITD 68 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH-------------HHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH-------------HHHHHHHHHH
Confidence 467899999999999999999999999999999999987667888999999999665 3455555555
Q ss_pred HHHHhhhcCC--C-------------C--CCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcc
Q 009034 122 RVIAEELRGD--E-------------D--SDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184 (546)
Q Consensus 122 ~i~~~~~~~~--~-------------~--~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 184 (546)
.+.+...... . . ......++++|+||.+++++||||+|++|++|+++|||+|.|.++. +++
T Consensus 69 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~ 146 (174)
T 1j4w_A 69 LLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPN 146 (174)
T ss_dssp HHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTT
T ss_pred HHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCC
Confidence 4433210000 0 0 0012346899999999999999999999999999999999998642 234
Q ss_pred cCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009034 185 ALRSDELVQISGEASVVKKALCQIASRL 212 (546)
Q Consensus 185 ~~~~dr~v~I~G~~~~v~~A~~~I~~~l 212 (546)
..+.++.|+|+|+.++|.+|+.+|.++|
T Consensus 147 ~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 147 ADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp SCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 4567899999999999999999998864
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=8.4e-24 Score=194.60 Aligned_cols=154 Identities=23% Similarity=0.376 Sum_probs=122.6
Q ss_pred eEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCC--CCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHH
Q 009034 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET--VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (546)
Q Consensus 43 ~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~--~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (546)
++++|+||.+++|.||||+|++||+|+++|+|+|+|.+. .+++.+|+|+|+|.++. +..|+..+.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~ 68 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK-------------VQQACEMVM 68 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH-------------HHHHHHHHH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 678999999999999999999999999999999999754 35678999999998665 456666666
Q ss_pred HHHHHhhhcC---CCCCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcC
Q 009034 121 DRVIAEELRG---DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGE 197 (546)
Q Consensus 121 ~~i~~~~~~~---~~~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~ 197 (546)
+.+.+..... ..+......++++|.||.+++++||||+|.+|++|+++|||+|.|.+... .+.++.|+|+|+
T Consensus 69 ~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~-----~~~~~~v~I~G~ 143 (164)
T 2jvz_A 69 DILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGP 143 (164)
T ss_dssp HHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----TSSEEEEEEESC
T ss_pred HHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----CCCcEEEEEEcC
Confidence 5443221100 00001111356889999999999999999999999999999999976532 245899999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 009034 198 ASVVKKALCQIASRLHD 214 (546)
Q Consensus 198 ~~~v~~A~~~I~~~l~~ 214 (546)
+++|.+|+.+|.+++++
T Consensus 144 ~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 PDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999865
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=4e-23 Score=189.85 Aligned_cols=154 Identities=21% Similarity=0.327 Sum_probs=118.8
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCC-CCCCCceEEEEecCcchhhhhhHHHHHHHHhcCccccc-c
Q 009034 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSS-STEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK-I 361 (546)
Q Consensus 284 ~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~i~~~-~~~~~erii~i~g~~~~~~~~~~~~~a~~~~~~~~~~~-~ 361 (546)
.+++|+||.+.+|.|||++|++|++|+++|||+|+|++. .++..+++++|+|.... +..+...++.. +.+. .
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~---v~~A~~~I~~~---~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA---QFKAQGRIYGK---LKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH---HHHHHHHHHHH---HHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH---HHHHHHHHHHH---Hhcccc
Confidence 488999999999999999999999999999999999985 35678899999996421 11122222211 1111 1
Q ss_pred ccccCCcceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHH
Q 009034 362 ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTR 441 (546)
Q Consensus 362 ~~~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 441 (546)
........++.+|.||.+++|+||||+|++|++|+++|||+|+|... ..|. ..+++.|+|+|++++|+.|+.+|.++
T Consensus 77 ~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~--~~~~~~v~I~G~~~~v~~A~~~I~~~ 153 (163)
T 3krm_A 77 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPD--ENDQVIVKIIGHFYASQMAQRKIRDI 153 (163)
T ss_dssp SCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCC--TTSEEEEEEEECHHHHHHHHHHHHHH
T ss_pred cccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCC--CCCceEEEEEeCHHHHHHHHHHHHHH
Confidence 11112335778999999999999999999999999999999999653 3343 23345899999999999999999999
Q ss_pred HHhcc
Q 009034 442 LRANL 446 (546)
Q Consensus 442 i~~~~ 446 (546)
|++..
T Consensus 154 i~~~~ 158 (163)
T 3krm_A 154 LAQVK 158 (163)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98743
No 7
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.89 E-value=2.2e-23 Score=194.35 Aligned_cols=159 Identities=21% Similarity=0.377 Sum_probs=120.5
Q ss_pred CccEEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCC---CCCCceEEEEecCcchhhhhhHHHHHHHHhcCcc
Q 009034 281 SKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSS---TEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRC 357 (546)
Q Consensus 281 ~~~~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~i~~~~---~~~~erii~i~g~~~~~~~~~~~~~a~~~~~~~~ 357 (546)
..+++++|+||.+++|.|||++|++|++|+++|||+|+|++.. +...+|+++|+|... .+..+.+.+..+....
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~---~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---ALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHH---HHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHH---HHHHHHHHHHHHHhcc
Confidence 3568999999999999999999999999999999999998643 346789999999642 2222333222221111
Q ss_pred cccc------------ccccCCcceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEE
Q 009034 358 SEKI------------ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425 (546)
Q Consensus 358 ~~~~------------~~~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~ 425 (546)
.... .........+.+|+||.+++|+||||+|++|++|+++|||+|+|.+....| .+++++|+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~~v~I~ 156 (178)
T 2anr_A 80 PQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---NLQNRVVTVS 156 (178)
T ss_dssp CCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEEEEE
T ss_pred CCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---CCCceEEEEE
Confidence 0000 000112347889999999999999999999999999999999997654333 4678999999
Q ss_pred cCHHHHHHHHHHHHHHHHhc
Q 009034 426 GDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 426 G~~~~v~~A~~~I~~~i~~~ 445 (546)
|++++|+.|+.+|.++|+++
T Consensus 157 G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 157 GEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999875
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.88 E-value=1.3e-22 Score=205.85 Aligned_cols=230 Identities=16% Similarity=0.126 Sum_probs=156.5
Q ss_pred CCCCceEEEEEecCCceeEEeecCc--hHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009034 135 DGGHQVTAKLLVPSDQIGCVIGKGG--QIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212 (546)
Q Consensus 135 ~~~~~~~~~l~Vp~~~vg~iIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l 212 (546)
...+.+|+++.||..++.+||||+| ++|++|+++|||+|+|+....-..........|+|+|.+++|++|+.+|.+++
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 3468899999999999999999999 99999999999999997643000000134568999999999999999988743
Q ss_pred hcCCCCccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEEEeec
Q 009034 213 HDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPV 292 (546)
Q Consensus 213 ~~~~~~~~~~~~s~~~~~~~~~g~~~~p~~g~~~~~~~p~~~~~gg~~~d~~~~~~~~~~~~p~~~~~~~~~~~~v~vp~ 292 (546)
.+++.+.+|.
T Consensus 105 ----------------------------------------------------------------------Pl~i~~elp~ 114 (376)
T 3n89_A 105 ----------------------------------------------------------------------HFTVFMALSK 114 (376)
T ss_dssp ----------------------------------------------------------------------EEEEEEECTT
T ss_pred ----------------------------------------------------------------------CceEEEEccc
Confidence 1234444444
Q ss_pred CcccccccCCchhHHHHHhhhCCeEEecCCCCC--CCceEEEEecCcchhhhhhHHHHHHHHhcCccccccccccCCcce
Q 009034 293 ANIGGVIGKGGAIINQIRQESGAAIKVDSSSTE--GDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISF 370 (546)
Q Consensus 293 ~~~g~IIGk~G~~Ik~i~~~sga~I~i~~~~~~--~~erii~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (546)
..+.. ......|.+ ++.+++.|.|+..... .....|+|+|.+.-.+. +.+|+..+...+.+. .......+
T Consensus 115 ~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~---akeA~~~Ll~~l~~~--e~~~~~~~ 186 (376)
T 3n89_A 115 MKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHE---LIEAAKRLNEILFRE--SPAPENNF 186 (376)
T ss_dssp CSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHH---HHHHHHHHHHHHCC----CCCSSCE
T ss_pred cccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHHH---HHHHHHHHHHHHHhh--hcccccce
Confidence 32221 111233444 5678999998654211 12568999997643332 344433332222211 11123458
Q ss_pred eEEEEEccCcceeEEcCCC--hhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHH
Q 009034 371 TTRLLVPTSRIGCLIGKGG--SIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLR 443 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG--~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 443 (546)
++.|.|+..+|..||||+| ..|+.|+++|||+|.++..++ +.....+...|+|+|+.++|..|+.+|++.|=
T Consensus 187 s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d-~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLP 260 (376)
T 3n89_A 187 TLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNN-RNETRGNIYEIKVVGNIDNVLKARRYIMDLLP 260 (376)
T ss_dssp EEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHHTSE
T ss_pred EEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCC-cccccCCceEEEEEeCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999 667999999999999975432 11001234689999999999999999988864
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=1.6e-22 Score=187.77 Aligned_cols=157 Identities=18% Similarity=0.287 Sum_probs=116.2
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhhhhhHHHHHHHHhcCcccc----
Q 009034 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSE---- 359 (546)
Q Consensus 284 ~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~i~~~~~~~~erii~i~g~~~~~~~~~~~~~a~~~~~~~~~~---- 359 (546)
.+++|.||.+++|.|||++|++|++|+++|||+|+|++......+++++|+|.......+...+.+++........
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~ 82 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPG 82 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--------
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCCC
Confidence 5789999999999999999999999999999999998765566789999999742111111122222221110000
Q ss_pred -----------ccccccCCcceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCH
Q 009034 360 -----------KIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDL 428 (546)
Q Consensus 360 -----------~~~~~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~ 428 (546)
...........+.+|.||.+++|+||||+|++|++|+++|||+|+|.... |.+..+++++|+|+|++
T Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~~~~~~~v~I~G~~ 160 (174)
T 1j4w_A 83 PGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPNADPNMKLFTIRGTP 160 (174)
T ss_dssp ---------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTTSCTTEEEEEEECCH
T ss_pred CCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCCCCCCceEEEEECCH
Confidence 00000001246889999999999999999999999999999999997642 33445678999999999
Q ss_pred HHHHHHHHHHHHHH
Q 009034 429 DLAKDALIQVMTRL 442 (546)
Q Consensus 429 ~~v~~A~~~I~~~i 442 (546)
++|+.|+.+|.++|
T Consensus 161 ~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 161 QQIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998864
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=184.73 Aligned_cols=154 Identities=25% Similarity=0.436 Sum_probs=118.4
Q ss_pred ccEEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhhhhhHHHHHHHHhcCc-cccc
Q 009034 282 KEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPR-CSEK 360 (546)
Q Consensus 282 ~~~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~i~~~~~~~~erii~i~g~~~~~~~~~~~~~a~~~~~~~-~~~~ 360 (546)
.+++++|+||.+.+|.|||++|++|++|+++|||+|+|++. +.++++++|+|... .+..+...++..... +...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~---~v~~A~~~I~~~i~e~~~~~ 77 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN---AIFKAFAMIIDKLEEDISSS 77 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHH---HHHHHHHHHHHHHHHHHTSC
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHH---HHHHHHHHHHHHHHhhcccc
Confidence 35799999999999999999999999999999999999975 34689999999732 112222222211100 0000
Q ss_pred ccc--ccCCcceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHH
Q 009034 361 IER--DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQV 438 (546)
Q Consensus 361 ~~~--~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I 438 (546)
... ......++.+|.||.+++|+||||+|++|++|+++|||+|+|.+ +..| .+++++|+|+|++++|+.|+.+|
T Consensus 78 ~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~---~~~~~~v~I~G~~~~v~~A~~~I 153 (160)
T 2jzx_A 78 MTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 153 (160)
T ss_dssp CCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCST---TCCEEEEEEEECHHHHHHHHHHH
T ss_pred CCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCC---CCCceEEEEEcCHHHHHHHHHHH
Confidence 000 01123578999999999999999999999999999999999965 3344 46789999999999999999999
Q ss_pred HHHHHh
Q 009034 439 MTRLRA 444 (546)
Q Consensus 439 ~~~i~~ 444 (546)
.+.|.+
T Consensus 154 ~~~i~e 159 (160)
T 2jzx_A 154 CVVMLE 159 (160)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
No 11
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.87 E-value=5.2e-22 Score=182.57 Aligned_cols=154 Identities=18% Similarity=0.320 Sum_probs=117.8
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCC--CCCCceEEEEecCcchhhhhhHHHHHHHHhcCccccc-
Q 009034 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSS--TEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK- 360 (546)
Q Consensus 284 ~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~i~~~~--~~~~erii~i~g~~~~~~~~~~~~~a~~~~~~~~~~~- 360 (546)
++++|+||.+++|.|||++|++|++|+++|||+|++.+.. +...+++++|+|... .+..+.+.+..+.......
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~---~v~~A~~~I~~ii~e~~~~~ 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPY---KVQQACEMVMDILRERDQGG 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHH---HHHHHHHHHHHHTTCSSSCC
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHH---HHHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999997643 345688999999642 2233444444332221100
Q ss_pred ccc--c-cCCcceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHH
Q 009034 361 IER--D-SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQ 437 (546)
Q Consensus 361 ~~~--~-~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~ 437 (546)
... + .....++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.+ + .+.++.|+|+|++++|+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~---~~~~~~v~I~G~~~~v~~A~~~ 153 (164)
T 2jvz_A 79 FGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARI 153 (164)
T ss_dssp CSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T---TSSEEEEEEESCHHHHHHHHHH
T ss_pred CCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C---CCCcEEEEEEcCHHHHHHHHHH
Confidence 000 0 001135688999999999999999999999999999999997542 2 3457899999999999999999
Q ss_pred HHHHHHhc
Q 009034 438 VMTRLRAN 445 (546)
Q Consensus 438 I~~~i~~~ 445 (546)
|.++|++.
T Consensus 154 I~~~i~~~ 161 (164)
T 2jvz_A 154 INDLLQSL 161 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99998764
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.83 E-value=4.8e-20 Score=187.04 Aligned_cols=290 Identities=11% Similarity=0.103 Sum_probs=177.9
Q ss_pred CCceEEEEEecCCccceEecCCc--HHHHHHHHHhCCeEEEcCCC-----CCCCceEEEEecCCccccccccCcccCCHH
Q 009034 40 PEDTVYRYLCPIRKIGSIIGRGG--EIVKQLRIDTKSKIRIGETV-----PGSEERVVTVYSASDETNAFEDGDKFVSPA 112 (546)
Q Consensus 40 ~~~~~~rilip~~~~g~IIGk~G--~~Ik~i~~~tga~I~i~~~~-----~~~~ervv~I~G~~~~~~~~~~~~~~v~~a 112 (546)
.+.+++.+.||..+|++||||+| ++|++|+++|+|+|+|++.. +......|+|+|..++|
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enV------------- 93 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDV------------- 93 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHH-------------
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHH-------------
Confidence 67899999999999999999999 99999999999999998764 11345789999998773
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceE
Q 009034 113 QDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192 (546)
Q Consensus 113 ~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v 192 (546)
..|..++.+ -..+++.+.+|...+.. ..-...|.+ ++.++++|.|....+.. ......|
T Consensus 94 E~AR~~I~~---------------l~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~---~~~sd~V 152 (376)
T 3n89_A 94 DRARMLMRR---------------NCHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKN---GIVTTYL 152 (376)
T ss_dssp HHHHHHHHH---------------SCEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEEEE
T ss_pred HHHHHHHHh---------------cCCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccccc---CCCCCEE
Confidence 344333332 12455666677643332 111345555 67899999986642211 1124579
Q ss_pred EEEcCHHHHHHHHHHHHHHHhcCCCCccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 009034 193 QISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLY 272 (546)
Q Consensus 193 ~I~G~~~~v~~A~~~I~~~l~~~~~~~~~~~~s~~~~~~~~~g~~~~p~~g~~~~~~~p~~~~~gg~~~d~~~~~~~~~~ 272 (546)
+|+|...+|.+|++++..++..-....
T Consensus 153 ~IrG~~~nv~~akeA~~~Ll~~l~~~e----------------------------------------------------- 179 (376)
T 3n89_A 153 RITAREKNQHELIEAAKRLNEILFRES----------------------------------------------------- 179 (376)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHHCC-------------------------------------------------------
T ss_pred EEEcChhhHHHHHHHHHHHHHHHHhhh-----------------------------------------------------
Confidence 999998776665555554443310000
Q ss_pred CCCCCCCCCccEEEEEEeecCcccccccCCc--hhHHHHHhhhCCeEEecCCCCC----CCceEEEEecCcchhhhhhHH
Q 009034 273 SAPRDDLSSKEFSLRLVCPVANIGGVIGKGG--AIINQIRQESGAAIKVDSSSTE----GDDCLITVSSKEFFEDTLSAT 346 (546)
Q Consensus 273 ~~p~~~~~~~~~~~~v~vp~~~~g~IIGk~G--~~Ik~i~~~sga~I~i~~~~~~----~~erii~i~g~~~~~~~~~~~ 346 (546)
......+++.|.|+..+|..|||++| ..|++|+++|||+|.|++.... .....|+|+|.+ +.+..+
T Consensus 180 -----~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~---e~V~~A 251 (376)
T 3n89_A 180 -----PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNI---DNVLKA 251 (376)
T ss_dssp -----CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCH---HHHHHH
T ss_pred -----cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCH---HHHHHH
Confidence 00123478999999999999999999 5569999999999999975331 234689999975 333344
Q ss_pred HHHHHHhcCccccccccccCCcceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCC---ceEE
Q 009034 347 IEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDD---EMVQ 423 (546)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~---r~v~ 423 (546)
.+.++.+.| +...|.++.+..-.-.-.--..|-.+-++.++.|.|.++..-|..--+++ ..|.
T Consensus 252 rk~I~~lLP--------------v~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (376)
T 3n89_A 252 RRYIMDLLP--------------ISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTPSVYEPADLLSGEVPLNCAS 317 (376)
T ss_dssp HHHHHHTSE--------------EEEEEEEEGGGBC--------CBEEEECTTSCEEEEEEEEECCSSSSCCCEEEEEEE
T ss_pred HHHHHhhCC--------------EEEEEecCCcccccccccchhHHHHHHHhcCeEEEEeecCCCchhhcccccccceEE
Confidence 555555443 44445544432222222222233345578899999976532221000111 3477
Q ss_pred EEcCH---HHHHHHHHHH
Q 009034 424 ISGDL---DLAKDALIQV 438 (546)
Q Consensus 424 I~G~~---~~v~~A~~~I 438 (546)
|..-. -++-+|...+
T Consensus 318 ~~s~e~n~~~~y~~~~~~ 335 (376)
T 3n89_A 318 LRSKEFNIKKLYTAYQKV 335 (376)
T ss_dssp EEEEGGGHHHHHHHHHHH
T ss_pred EEEEeccHHHHHHHHHHH
Confidence 87754 4444454443
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.74 E-value=2.8e-18 Score=153.41 Aligned_cols=137 Identities=18% Similarity=0.251 Sum_probs=99.2
Q ss_pred cEEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhhhhhHHHHHHHHhcCccccccc
Q 009034 283 EFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE 362 (546)
Q Consensus 283 ~~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~i~~~~~~~~erii~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (546)
.++++|.||.+.+|.+||++|++|++|++++|+.+...+. + ++. +++.+... ..+..+..+..
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~--~-~~~-~i~~~~~p------~~v~~~~~~l~------- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE--D-TCT-FHIYGEDQ------DAVKKARSFLE------- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET--T-TTE-EEEEESSH------HHHHHHHHHHC-------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC--C-chh-eeeccCCH------HHHHHHHHhhh-------
Confidence 4689999999999999999999999999999944332222 1 333 44444210 11222211100
Q ss_pred cccCCcceeEEEEEccCcceeEEcCCChhHHHHHHhhCc-eEEEecCCCCCCCCCCCCc--eEEEEcCHHHHHHHHHHHH
Q 009034 363 RDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKA-NIRILPKENLPKIASEDDE--MVQISGDLDLAKDALIQVM 439 (546)
Q Consensus 363 ~~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga-~I~i~~~~~~P~~~~~~~r--~v~I~G~~~~v~~A~~~I~ 439 (546)
..+.++.||.+++|++|||+|++|+.|++.||| +|+|.+.++... ..+++ .|+|+|++++|+.|+.+|.
T Consensus 66 ------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~Ak~li~ 137 (144)
T 2qnd_A 66 ------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIANATVLLD 137 (144)
T ss_dssp ------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHHHHHHHH
T ss_pred ------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHHHHHHHH
Confidence 113789999999999999999999999999997 999987543211 12333 5899999999999999999
Q ss_pred HHHHh
Q 009034 440 TRLRA 444 (546)
Q Consensus 440 ~~i~~ 444 (546)
++|..
T Consensus 138 ~~l~~ 142 (144)
T 2qnd_A 138 YHLNY 142 (144)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99865
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.70 E-value=2.8e-17 Score=146.94 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=100.1
Q ss_pred ceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHHH
Q 009034 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHD 121 (546)
Q Consensus 42 ~~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~ 121 (546)
.++.+|+||.+.+|++||++|++|++|+++++ |++.+.. ..+++.+...++++. +.++..
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~~-----------------v~~~~~ 62 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQDA-----------------VKKARS 62 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHHH-----------------HHHHHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHHH-----------------HHHHHH
Confidence 46789999999999999999999999999999 5543221 223344433333332 222211
Q ss_pred HHHHhhhcCCCCCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCc-eEEEecCCCCCcccCCCCc--eEEEEcCH
Q 009034 122 RVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGA-QIRILKDEHLPSCALRSDE--LVQISGEA 198 (546)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~dr--~v~I~G~~ 198 (546)
+.. .....+.||.++++++|||+|++|+.|++.||| +|.|..+++... ...++ .|+|+|+.
T Consensus 63 -~l~-------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~ 126 (144)
T 2qnd_A 63 -FLE-------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTK 126 (144)
T ss_dssp -HHC-------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEH
T ss_pred -hhh-------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCH
Confidence 110 113889999999999999999999999999997 999987543211 12344 48999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 009034 199 SVVKKALCQIASRLHD 214 (546)
Q Consensus 199 ~~v~~A~~~I~~~l~~ 214 (546)
++|..|+.+|.++|..
T Consensus 127 ~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 127 DSIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999865
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.58 E-value=1.7e-15 Score=144.00 Aligned_cols=142 Identities=22% Similarity=0.227 Sum_probs=102.2
Q ss_pred EEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHHHHH
Q 009034 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123 (546)
Q Consensus 44 ~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i 123 (546)
..++.||.+.+|.|||++|++|+.|+++|||+|+|+. .++.|+|.+....-. ...+++|...|...+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d--------~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETED--------PLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCS--------HHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCC--------HHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999952 357899998641100 011345544444422
Q ss_pred H----H--hhhcCCCCCCCCCceEEEEEec-----C------CceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccC
Q 009034 124 I----A--EELRGDEDSDGGHQVTAKLLVP-----S------DQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (546)
Q Consensus 124 ~----~--~~~~~~~~~~~~~~~~~~l~Vp-----~------~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (546)
. + ..+. + .......+.++ . ..+|+||||+|.+|+.|++.|||+|.|.
T Consensus 102 rg~~~e~g~~ll-~-----dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~---------- 165 (219)
T 2e3u_A 102 RGFSPERAFRLL-N-----EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY---------- 165 (219)
T ss_dssp TTCCHHHHGGGG-S-----TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE----------
T ss_pred ccCCccccceec-c-----CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC----------
Confidence 0 1 0111 0 11111123332 1 2689999999999999999999999994
Q ss_pred CCCceEEEEcCHHHHHHHHHHHHHHHhcCC
Q 009034 187 RSDELVQISGEASVVKKALCQIASRLHDNP 216 (546)
Q Consensus 187 ~~dr~v~I~G~~~~v~~A~~~I~~~l~~~~ 216 (546)
++.|.|.|+.++|+.|..+|.++|...+
T Consensus 166 --~~~v~i~G~~~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 166 --GKTVAIIGNPIQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp --TTEEEEEECHHHHHHHHHHHHHHHTTCC
T ss_pred --CeEEEEEeCHHHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999996643
No 16
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=124.92 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=64.4
Q ss_pred eeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
.+.+|+||.+++|+||||+|++||+|+++|||+|+|.... .| ..+.++++|+|+|++++|++|+.+|.++|.+.
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 3788999999999999999999999999999999997642 22 22456799999999999999999999998763
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.52 E-value=1.2e-14 Score=115.43 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=64.0
Q ss_pred eeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009034 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 444 (546)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+.. +++.++.|+|+|++++++.|+.+|.+.|.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999998653321 256789999999999999999999998765
No 18
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.52 E-value=9.6e-15 Score=114.75 Aligned_cols=70 Identities=24% Similarity=0.460 Sum_probs=63.7
Q ss_pred ceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
.++.+|+||.+++|+||||+|++|++|+++|||+|+|.+. +..+|+|+|.|+++++..|+.+|.++|+++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999753 245799999999999999999999999863
No 19
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.50 E-value=4.3e-14 Score=134.28 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=99.4
Q ss_pred EEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhh-----hhhHHHHHHHHhcC-ccc
Q 009034 285 SLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFED-----TLSATIEAVVRLQP-RCS 358 (546)
Q Consensus 285 ~~~v~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~i~~~~~~~~erii~i~g~~~~~~-----~~~~~~~a~~~~~~-~~~ 358 (546)
..++.||.+.++.|||++|.+|+.|+++|||+|+++.. +..++|.+.....+ .+...+.++.+-++ ...
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g 109 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERA 109 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCcccc
Confidence 66999999999999999999999999999999999842 45677877542111 11122222221110 000
Q ss_pred cccccccCCcceeEEEEEc-----------cCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC
Q 009034 359 EKIERDSGLISFTTRLLVP-----------TSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD 427 (546)
Q Consensus 359 ~~~~~~~~~~~~~~~l~VP-----------~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~ 427 (546)
..+..+ ...-..+.|+ ...+|+||||+|++|+.|++.|||+|.|.. ++|+|.|+
T Consensus 110 ~~ll~d---d~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------------~~v~i~G~ 174 (219)
T 2e3u_A 110 FRLLNE---GEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------------KTVAIIGN 174 (219)
T ss_dssp GGGGST---TCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET------------TEEEEEEC
T ss_pred ceeccC---CccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC------------eEEEEEeC
Confidence 011111 1122234433 236899999999999999999999999952 47999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 009034 428 LDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 428 ~~~v~~A~~~I~~~i~~~ 445 (546)
+++++.|+.+|.++|...
T Consensus 175 ~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999999653
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.50 E-value=3.8e-14 Score=114.04 Aligned_cols=73 Identities=27% Similarity=0.470 Sum_probs=65.4
Q ss_pred cceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
+.++.+|.||.+++|+||||+|++|++|+++|||+|+|... .| ++++++|+|+|++++|+.|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 35889999999999999999999999999999999999642 22 467899999999999999999999999874
No 21
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=114.60 Aligned_cols=72 Identities=29% Similarity=0.521 Sum_probs=65.3
Q ss_pred ceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
.++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. .+.++++.|+|+|++++++.|+.+|.+.|.++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 5789999999999999999999999999999999999752 22567899999999999999999999999764
No 22
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=2.5e-14 Score=115.14 Aligned_cols=72 Identities=29% Similarity=0.502 Sum_probs=64.2
Q ss_pred ceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
.++.+|.||.+++|+||||+|++|++|+++|||+|+|... .++++++.|+|+|++++|+.|+.+|.+.|.++
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999999999999753 12567899999999999999999999999775
No 23
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=2.6e-14 Score=116.38 Aligned_cols=78 Identities=26% Similarity=0.369 Sum_probs=67.8
Q ss_pred eeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhccccc
Q 009034 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDR 449 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~~ 449 (546)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+.. +++.++.|+|+|++++++.|+.+|.+.|.+....+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~r 80 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVR 80 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhcccccc
Confidence 5788999999999999999999999999999999997643321 24678999999999999999999999998865443
No 24
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.45 E-value=5.4e-14 Score=114.95 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=66.2
Q ss_pred CcceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 367 LISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 367 ~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|... .| .++++.|+|+|++++|++|+.+|.++|.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 446889999999999999999999999999999999999642 22 467899999999999999999999999874
No 25
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=111.13 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=64.6
Q ss_pred cceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009034 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 444 (546)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|.+.... +...+|.|+|+|++++++.|+.+|.+.+++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 34778999999999999999999999999999999999764322 246788999999999999999999998753
No 26
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=116.45 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=63.7
Q ss_pred eeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009034 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 446 (546)
.+.+|.||.+++|+||||+|++||+|+++|+|+|+|.+++ + ...+|+|+|+|++++|++|+.+|.++|.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 4688999999999999999999999999999999997532 1 3567899999999999999999999998754
No 27
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.44 E-value=9.6e-14 Score=114.16 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=65.5
Q ss_pred cceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.... + ...+++|+|+|++++|+.|+.+|.++|.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--G---GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 358899999999999999999999999999999999997532 1 456799999999999999999999999874
No 28
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.9e-14 Score=113.09 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=62.1
Q ss_pred cceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009034 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 444 (546)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|+++ ++++.|+|+|++++|+.|+.+|.+.+..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 45889999999999999999999999999999999999643 2357999999999999999999997754
No 29
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.42 E-value=1.2e-13 Score=114.15 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=66.4
Q ss_pred CcceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 367 LISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 367 ~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
...++.+|+||.+++|+||||+|++||+|+++|||+|+|.+... +. ..++|.|+|+|++++|+.|+.+|.++|.+.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP-QN--TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC-CS--SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCC-CC--CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34688999999999999999999999999999999999976432 11 346899999999999999999999999763
No 30
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.41 E-value=1.3e-13 Score=108.28 Aligned_cols=71 Identities=28% Similarity=0.573 Sum_probs=64.7
Q ss_pred CceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009034 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 138 ~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (546)
.+++++|+||.+.+|.||||+|++|++|+++|||+|+|.++ ...+|.|+|+|++++|.+|+.+|.++|+++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 46889999999999999999999999999999999999864 146899999999999999999999999763
No 31
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.39 E-value=2e-13 Score=126.46 Aligned_cols=141 Identities=18% Similarity=0.181 Sum_probs=100.5
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHHHHHH
Q 009034 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124 (546)
Q Consensus 45 ~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~ 124 (546)
++++||...+|.|||++|++++.|++.++|+|+++ ..++.|+|+....... ...+++|...|.....
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~d--------p~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIP--------PVNLMKAAEVVKAISL 72 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSC--------HHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCC--------HHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999994 4578899984432211 0113344333322111
Q ss_pred ----HhhhcCCCCCCCCCceEEE-EEec----------CCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCC
Q 009034 125 ----AEELRGDEDSDGGHQVTAK-LLVP----------SDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSD 189 (546)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~-l~Vp----------~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~d 189 (546)
+..+.- ..+.+.+. +.++ ...+|+||||+|.+|+.|+..|||+|.|. +
T Consensus 73 gf~~e~A~~L-----l~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~ 135 (191)
T 1tua_A 73 GFPPEKAFRL-----LEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------E 135 (191)
T ss_dssp TCCHHHHGGG-----GSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------S
T ss_pred CCCHHHhhhc-----ccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------C
Confidence 011100 01122233 3343 23579999999999999999999999984 3
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009034 190 ELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 190 r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (546)
+.|.|.|+.++++.|...|.++|...
T Consensus 136 ~~v~i~G~~~~i~~Ar~~i~~li~g~ 161 (191)
T 1tua_A 136 YEVAIIGDYERAMAAKQAIEMLAEGR 161 (191)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeChHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999653
No 32
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.39 E-value=7.4e-13 Score=106.46 Aligned_cols=72 Identities=32% Similarity=0.540 Sum_probs=61.7
Q ss_pred CCceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHH
Q 009034 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKV 119 (546)
Q Consensus 40 ~~~~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i 119 (546)
...++++|+||.+++|.||||+|++|++|+++|+|+|+|++..++..+|+|+|+|+++. +..|..++
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~-------------v~~A~~~I 70 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ-------------IQNAQYLL 70 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHH-------------HHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHH-------------HHHHHHHH
Confidence 45688999999999999999999999999999999999998878889999999998665 35666666
Q ss_pred HHHHH
Q 009034 120 HDRVI 124 (546)
Q Consensus 120 ~~~i~ 124 (546)
.+.+.
T Consensus 71 ~~~i~ 75 (82)
T 1zzk_A 71 QNSVK 75 (82)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 33
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.37 E-value=3.3e-13 Score=106.96 Aligned_cols=71 Identities=28% Similarity=0.427 Sum_probs=61.8
Q ss_pred CceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHH
Q 009034 41 EDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (546)
Q Consensus 41 ~~~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (546)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+..+++.+|+|+|+|.++. +..|..++.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~-------------v~~A~~~I~ 69 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS-------------ISLAQYLIN 69 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHH-------------HHHHHHHHH
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHH-------------HHHHHHHHH
Confidence 4678999999999999999999999999999999999998888889999999999665 456666666
Q ss_pred HHHH
Q 009034 121 DRVI 124 (546)
Q Consensus 121 ~~i~ 124 (546)
+.+.
T Consensus 70 ~~i~ 73 (76)
T 2p2r_A 70 VRLS 73 (76)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6543
No 34
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=5.2e-13 Score=107.39 Aligned_cols=72 Identities=28% Similarity=0.412 Sum_probs=62.2
Q ss_pred CCceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHH
Q 009034 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKV 119 (546)
Q Consensus 40 ~~~~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i 119 (546)
...++++|+||.+++|.||||+|++|++|+++|||+|+|.+..++..+|.|+|+|+++. +..|..+|
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I 69 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAAS-------------ISLAQYLI 69 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHH-------------HHHHHHHH
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHH-------------HHHHHHHH
Confidence 45688999999999999999999999999999999999998777888999999999765 45666666
Q ss_pred HHHHH
Q 009034 120 HDRVI 124 (546)
Q Consensus 120 ~~~i~ 124 (546)
.+.+.
T Consensus 70 ~~~i~ 74 (82)
T 1wvn_A 70 NARLS 74 (82)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 66543
No 35
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.37 E-value=7.2e-13 Score=111.49 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=65.5
Q ss_pred ceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009034 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 446 (546)
..+.+|.||.+++|+||||+|++|++|+++|||+|+|.+... + ..++++.|+|+|++++|+.|+.+|.++|.+..
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G--TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 578899999999999999999999999999999999975432 1 12357999999999999999999999998764
No 36
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.37 E-value=6.1e-13 Score=105.44 Aligned_cols=74 Identities=26% Similarity=0.440 Sum_probs=64.4
Q ss_pred ceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009034 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 139 ~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~ 214 (546)
..+++|+||.+++|.||||+|++|++|+++|||+|.|.++.+.. ..+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999998753321 136789999999999999999999998854
No 37
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.34 E-value=2.7e-12 Score=103.93 Aligned_cols=75 Identities=21% Similarity=0.475 Sum_probs=65.9
Q ss_pred CCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009034 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 137 ~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~ 214 (546)
....+.+|.||.+.++.||||+|++|++|+++|||+|.|..+...+ .+.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 4567899999999999999999999999999999999998753322 36789999999999999999999998853
No 38
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.33 E-value=1e-12 Score=107.35 Aligned_cols=72 Identities=32% Similarity=0.540 Sum_probs=62.0
Q ss_pred CCceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHH
Q 009034 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKV 119 (546)
Q Consensus 40 ~~~~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i 119 (546)
...++++|+||.+++|.||||+|++||+|+++|+|+|+|++..+++++|+|+|+|+++. ++.|..+|
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~-------------v~~A~~~I 77 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ-------------IQNAQYLL 77 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHH-------------HHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHH-------------HHHHHHHH
Confidence 45788999999999999999999999999999999999998878889999999999765 45666666
Q ss_pred HHHHH
Q 009034 120 HDRVI 124 (546)
Q Consensus 120 ~~~i~ 124 (546)
.+.+.
T Consensus 78 ~~~i~ 82 (89)
T 1j5k_A 78 QNSVK 82 (89)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 39
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.33 E-value=2.4e-12 Score=105.72 Aligned_cols=72 Identities=26% Similarity=0.356 Sum_probs=61.4
Q ss_pred CCceEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHH
Q 009034 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKV 119 (546)
Q Consensus 40 ~~~~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i 119 (546)
...++++|+||.+++|.||||+|++|++|+++|+|+|+|.+..++..+|+|+|+|+++. +..|..+|
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~-------------v~~A~~~I 78 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES-------------VQSAKRLL 78 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHH-------------HHHHHHHH
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHH-------------HHHHHHHH
Confidence 45688999999999999999999999999999999999998777788999999999665 35666566
Q ss_pred HHHHH
Q 009034 120 HDRVI 124 (546)
Q Consensus 120 ~~~i~ 124 (546)
.+.+.
T Consensus 79 ~~~i~ 83 (92)
T 1x4n_A 79 DQIVE 83 (92)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 40
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=2.7e-12 Score=105.90 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=64.5
Q ss_pred cceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009034 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 446 (546)
..++.+|.||.++||.|||++|++|++|+++|||+|+|+.+. ..+++.|+|+|++++|+.|+.+|.+++.+..
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999996532 2346799999999999999999999888754
No 41
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.31 E-value=4.1e-12 Score=117.62 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=98.8
Q ss_pred EEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhh-----hhhHHHHHHHHhcCcc-c
Q 009034 285 SLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFED-----TLSATIEAVVRLQPRC-S 358 (546)
Q Consensus 285 ~~~v~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~i~~~~~~~~erii~i~g~~~~~~-----~~~~~~~a~~~~~~~~-~ 358 (546)
.+++.||.+.+|.|||++|++++.|++.++++|+++.. ++.++|.......+ .+...+.++.+-++.- .
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~-----~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A 79 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE-----NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKA 79 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT-----TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC-----CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHh
Confidence 36899999999999999999999999999999999753 45667763321111 1122333333322110 0
Q ss_pred cccccccCCcceeEEEEEc----------cCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCH
Q 009034 359 EKIERDSGLISFTTRLLVP----------TSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDL 428 (546)
Q Consensus 359 ~~~~~~~~~~~~~~~l~VP----------~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~ 428 (546)
-.+.+ +..+-..+.++ ....|.||||+|.+|+.|+..|||+|.|. +.+|.|.|++
T Consensus 80 ~~Ll~---Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~~~v~i~G~~ 144 (191)
T 1tua_A 80 FRLLE---EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------EYEVAIIGDY 144 (191)
T ss_dssp GGGGS---TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------SSEEEEEEEH
T ss_pred hhccc---CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------CCEEEEEeCh
Confidence 00111 11233344444 24689999999999999999999999994 2389999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 009034 429 DLAKDALIQVMTRLRA 444 (546)
Q Consensus 429 ~~v~~A~~~I~~~i~~ 444 (546)
++++.|...|..+|..
T Consensus 145 ~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 145 ERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999864
No 42
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=1.8e-12 Score=106.89 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=63.2
Q ss_pred ceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009034 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 446 (546)
.++.+|.||.+++|.|||++|++|++|+++|||+|+|++.+ +.++.|+|+|++++++.|+.+|.+.+.+..
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 58899999999999999999999999999999999996431 234789999999999999999999987743
No 43
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=3.8e-12 Score=105.45 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=64.2
Q ss_pred ceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
.++..|.||.++|+.||||+|++|++|+++|||+|+|++... | ...++.|+|+|+++++..|+.+|...+.+.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999976432 2 235789999999999999999999888753
No 44
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.30 E-value=1.5e-12 Score=107.50 Aligned_cols=77 Identities=22% Similarity=0.502 Sum_probs=67.8
Q ss_pred CCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009034 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 136 ~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (546)
....++++|+||.+++++||||+|++||+|+++|||+|.|.++.... ...+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999999999999999999999998753221 246899999999999999999999999763
No 45
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=1.4e-12 Score=106.08 Aligned_cols=74 Identities=26% Similarity=0.437 Sum_probs=65.3
Q ss_pred eEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009034 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 140 ~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (546)
++++|+||.+++|.||||+|++|++|+++|||+|.|.++.+.. ..+.++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999998753321 1367899999999999999999999999763
No 46
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.29 E-value=1.5e-12 Score=101.45 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=59.3
Q ss_pred ceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009034 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRL 442 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i 442 (546)
..+.+|.||.+++|.|||++|++|++|+++|||+|+|++. ++.++.|+|.|++++++.|+.+|.+.+
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD-------SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC-------CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC-------CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999653 235679999999999999999998753
No 47
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=9.6e-13 Score=105.54 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=64.0
Q ss_pred CCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009034 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 136 ~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~ 214 (546)
....++++|.||.+++++||||+|++||+|+++|||+|+|++. .+++.|+|+|++++|++|+.+|.+++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999999999999764 2368899999999999999999998754
No 48
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=4e-12 Score=107.39 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=64.2
Q ss_pred EEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009034 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 141 ~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (546)
+++|+||.+++++||||+|++||+|+++|||+|+|.++.. + .....++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLP-P-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-T-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-C-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999986532 1 12346799999999999999999999999774
No 49
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.26 E-value=2.9e-12 Score=107.76 Aligned_cols=81 Identities=27% Similarity=0.424 Sum_probs=68.9
Q ss_pred CCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009034 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 136 ~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (546)
....++++|+||.++++.||||+|++|++|+++|||+|+|.+..+.. ...++.|+|+|+.++|.+|+.+|.+++.++
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT---LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC---CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 34668899999999999999999999999999999999998643211 245899999999999999999999999875
Q ss_pred CCCc
Q 009034 216 PSRS 219 (546)
Q Consensus 216 ~~~~ 219 (546)
+...
T Consensus 88 ~~~~ 91 (104)
T 1we8_A 88 EELR 91 (104)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4433
No 50
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=5.3e-12 Score=106.18 Aligned_cols=70 Identities=23% Similarity=0.473 Sum_probs=62.9
Q ss_pred eEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009034 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 140 ~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~ 214 (546)
.+++|+||.++++.||||+|++||+|+++|+|+|+|.++.. .+.+|.|+|+|++++|++|+.+|.+++.+
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----SSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999976432 25689999999999999999999999976
No 51
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=1.1e-11 Score=104.08 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=62.5
Q ss_pred ceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009034 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 446 (546)
..+.+|.||.++||.|||++|++|++|+++|||+|+|++.. ...+.|+|+|++++++.|+.+|.+.+.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 47889999999999999999999999999999999996532 234589999999999999999999887653
No 52
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=1.4e-11 Score=101.51 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=65.7
Q ss_pred CCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009034 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 135 ~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~ 214 (546)
+....++..|.||.++++.|||++|++|++|+++|||+|+|+.+.+ ..++.|+|+|.+++|.+|+.+|..++.+
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 4466789999999999999999999999999999999999976422 2467899999999999999999998866
No 53
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.17 E-value=1.5e-11 Score=95.83 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=60.5
Q ss_pred CceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009034 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212 (546)
Q Consensus 138 ~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l 212 (546)
...+..|.||.++++.|||++|.+|++|+++|||+|+|+.+. ..++.|+|+|+.++|.+|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999997642 24679999999999999999998754
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=2e-11 Score=100.66 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=65.5
Q ss_pred CCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009034 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 135 ~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~ 214 (546)
.....++.+|.||.+.++.|||++|.+|++|+++|||+|+|++.+ ..++.|+|+|+.++|.+|+.+|.+++.+
T Consensus 12 ~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 12 RLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAE 84 (94)
T ss_dssp CCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhc
Confidence 345678999999999999999999999999999999999997632 2367899999999999999999999866
Q ss_pred C
Q 009034 215 N 215 (546)
Q Consensus 215 ~ 215 (546)
.
T Consensus 85 ~ 85 (94)
T 2cte_A 85 Q 85 (94)
T ss_dssp H
T ss_pred c
Confidence 3
No 55
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.16 E-value=3.7e-11 Score=99.48 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=64.1
Q ss_pred CceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009034 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 138 ~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~ 214 (546)
...++.|.||.++++.||||+|++|++|+++|||+|+|+++.. + ...++.|+|+|+.++|.+|+.+|..++.+
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999987532 2 13678999999999999999999998865
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.11 E-value=6.3e-11 Score=97.44 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=63.2
Q ss_pred cceeEEEEEccCcceeEEcCCChhHHHHHHhh-CceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLT-KANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~T-ga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
..++..|.||.++|+.|||++|.+|++|+++| ||+|+|+.. ++..+.|+|.|+.++|++|+.+|.+.+.+.
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 36889999999999999999999999999999 999999643 234568999999999999999999998764
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=2.5e-10 Score=95.27 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=60.4
Q ss_pred ceeEEEEEccCcceeEEcCCChhHHHHHHh-hCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009034 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRL-TKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~-Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 446 (546)
.++.+|.||.++|++|||++|++|++|+++ ++++|+++. +++.|+|+|+++.|++|+.+|.+.+++..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 689999853 24689999999999999999998887643
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=1.4e-10 Score=97.23 Aligned_cols=70 Identities=24% Similarity=0.371 Sum_probs=62.4
Q ss_pred CceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009034 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 138 ~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~ 214 (546)
.+++..|.||.++++.|||++|.+|++|+++|||+|+|+.+.. ..+.|+|+|+.++|.+|+.+|..++.+
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~-------~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-------QSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT-------TCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC-------CcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999976422 345899999999999999999998866
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=3.2e-10 Score=93.26 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=65.3
Q ss_pred CCCCceEEEEEecCCceeEEeecCchHHHHHHhhc-CceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHh
Q 009034 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSET-GAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLH 213 (546)
Q Consensus 135 ~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~ 213 (546)
+..+.++..|.||.++++.|||++|.+|++|+++| ||+|+|+.+. +..+.|+|+|+.++|++|+.+|.+++.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-------SGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-------TTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999 9999997642 345689999999999999999999986
Q ss_pred c
Q 009034 214 D 214 (546)
Q Consensus 214 ~ 214 (546)
+
T Consensus 85 e 85 (95)
T 2ctj_A 85 E 85 (95)
T ss_dssp H
T ss_pred h
Confidence 6
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.93 E-value=1e-09 Score=91.51 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=60.0
Q ss_pred ceEEEEEecCCceeEEeecCchHHHHHHhh-cCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009034 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSE-TGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 139 ~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~-tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~ 214 (546)
.++.+|.||..++++|||++|++|++|+++ ++++|+|+.+ ++.|+|+|+++.|.+|+.+|..++.+
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----------~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG----------EDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS----------SCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC----------CCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 5999998752 56899999999999999999998866
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.88 E-value=1e-09 Score=88.52 Aligned_cols=64 Identities=25% Similarity=0.308 Sum_probs=56.2
Q ss_pred cceeEEEEEccCcceeEEcCCChhHHHHHHhhCce-EEEecCCCCCCCCCCCCceEEEEc-CHHHHHHHHHHHHHH
Q 009034 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN-IRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMTR 441 (546)
Q Consensus 368 ~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~-I~i~~~~~~P~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~ 441 (546)
..+...|.||.+++|.|||++|.+|++|+++|||+ |.|.. ++.+|+|.| +.+++++|+.+|...
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 35889999999999999999999999999999998 99942 347999999 899999998887443
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.65 E-value=1.7e-08 Score=81.47 Aligned_cols=65 Identities=26% Similarity=0.329 Sum_probs=57.3
Q ss_pred CCCceEEEEEecCCceeEEeecCchHHHHHHhhcCce-EEEecCCCCCcccCCCCceEEEEc-CHHHHHHHHHHHHH
Q 009034 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQ-IRILKDEHLPSCALRSDELVQISG-EASVVKKALCQIAS 210 (546)
Q Consensus 136 ~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~dr~v~I~G-~~~~v~~A~~~I~~ 210 (546)
....+...|.||.+.++.|||++|.+|++|+++|||+ |.|.. ++..|+|.| +.+++++|+.+|..
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHh
Confidence 3466789999999999999999999999999999998 99953 257899999 89999999887765
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.59 E-value=9.4e-08 Score=83.13 Aligned_cols=76 Identities=18% Similarity=0.346 Sum_probs=61.1
Q ss_pred ceeEEEEEccC------cceeEEcCCChhHHHHHHhhCceEEEecCCCCC-----------CCCCCCCceEEEEc-CHHH
Q 009034 369 SFTTRLLVPTS------RIGCLIGKGGSIITEMRRLTKANIRILPKENLP-----------KIASEDDEMVQISG-DLDL 430 (546)
Q Consensus 369 ~~~~~l~VP~~------~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P-----------~~~~~~~r~v~I~G-~~~~ 430 (546)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+.... .....++-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 47889999988 889999999999999999999999998743211 00112244688999 6899
Q ss_pred HHHHHHHHHHHHHh
Q 009034 431 AKDALIQVMTRLRA 444 (546)
Q Consensus 431 v~~A~~~I~~~i~~ 444 (546)
+++|+.+|..+|.+
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999865
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=1.7e-07 Score=79.91 Aligned_cols=77 Identities=16% Similarity=0.022 Sum_probs=58.2
Q ss_pred ceeEEEEEccC-------cceeEEcCCChhHHHHHHhhCceEEEecCCCC----CCCCC-CCCceEEEEc-CHHHHHHHH
Q 009034 369 SFTTRLLVPTS-------RIGCLIGKGGSIITEMRRLTKANIRILPKENL----PKIAS-EDDEMVQISG-DLDLAKDAL 435 (546)
Q Consensus 369 ~~~~~l~VP~~-------~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~----P~~~~-~~~r~v~I~G-~~~~v~~A~ 435 (546)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+... ..... .++-.|.|.+ +++++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 46778888865 78999999999999999999999999754210 00011 1233577776 699999999
Q ss_pred HHHHHHHHhc
Q 009034 436 IQVMTRLRAN 445 (546)
Q Consensus 436 ~~I~~~i~~~ 445 (546)
.+|.++|...
T Consensus 91 ~~Ie~Ll~~v 100 (119)
T 2yqr_A 91 KLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhch
Confidence 9999988754
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.39 E-value=6.1e-07 Score=77.99 Aligned_cols=77 Identities=27% Similarity=0.365 Sum_probs=61.2
Q ss_pred CceEEEEEecCC------ceeEEeecCchHHHHHHhhcCceEEEecCCCCC-----------cccCCCCceEEEEc-CHH
Q 009034 138 HQVTAKLLVPSD------QIGCVIGKGGQIVQNIRSETGAQIRILKDEHLP-----------SCALRSDELVQISG-EAS 199 (546)
Q Consensus 138 ~~~~~~l~Vp~~------~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p-----------~~~~~~dr~v~I~G-~~~ 199 (546)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|....... ......+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 467899999988 788999999999999999999999997632110 00112355788888 578
Q ss_pred HHHHHHHHHHHHHhc
Q 009034 200 VVKKALCQIASRLHD 214 (546)
Q Consensus 200 ~v~~A~~~I~~~l~~ 214 (546)
.+.+|+.+|..+|.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999999976
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=1.4e-06 Score=74.11 Aligned_cols=78 Identities=23% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCceEEEEEecCC-------ceeEEeecCchHHHHHHhhcCceEEEecCCCC-----CcccCCCCceEEEEc-CHHHHHH
Q 009034 137 GHQVTAKLLVPSD-------QIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-----PSCALRSDELVQISG-EASVVKK 203 (546)
Q Consensus 137 ~~~~~~~l~Vp~~-------~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~-----p~~~~~~dr~v~I~G-~~~~v~~ 203 (546)
-..++.+|.||.+ .++.|||++|.+||+|+++|||+|.|..+... .......+-.|.|++ +.+++.+
T Consensus 9 ~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~ 88 (119)
T 2yqr_A 9 MHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAA 88 (119)
T ss_dssp CSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHH
T ss_pred eeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHH
Confidence 3467788888865 67999999999999999999999999743210 000012344677776 5899999
Q ss_pred HHHHHHHHHhc
Q 009034 204 ALCQIASRLHD 214 (546)
Q Consensus 204 A~~~I~~~l~~ 214 (546)
|+.+|.++|.+
T Consensus 89 A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 89 AKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999999865
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.20 E-value=4.8e-07 Score=79.02 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=55.3
Q ss_pred eeEEEEEccC------cceeEEcCCChhHHHHHHhhCceEEEecCCCC------------CCCCCCCC-ceEEEEcC-HH
Q 009034 370 FTTRLLVPTS------RIGCLIGKGGSIITEMRRLTKANIRILPKENL------------PKIASEDD-EMVQISGD-LD 429 (546)
Q Consensus 370 ~~~~l~VP~~------~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~------------P~~~~~~~-r~v~I~G~-~~ 429 (546)
++.+|.||.+ ++|.|||++|.++|+|+++|||+|.|..+... |.....++ --|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 5678888854 49999999999999999999999999875421 00001122 25889884 43
Q ss_pred -----HHHHHHHHHHHHHHh
Q 009034 430 -----LAKDALIQVMTRLRA 444 (546)
Q Consensus 430 -----~v~~A~~~I~~~i~~ 444 (546)
.++.|+.+|...|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 788999999888753
No 68
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.08 E-value=2.8e-06 Score=92.55 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccC
Q 009034 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (546)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (546)
+.+..|.+++..+++.+.+.......+.....+....|.||.+.++.|||++|.+||.|+++|||+|.|..
T Consensus 534 ~aL~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d--------- 604 (630)
T 3u1k_A 534 EAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD--------- 604 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------
Confidence 34667888888888865544332222223445678899999999999999999999999999999999953
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009034 187 RSDELVQISGE-ASVVKKALCQIASRL 212 (546)
Q Consensus 187 ~~dr~v~I~G~-~~~v~~A~~~I~~~l 212 (546)
+..|.|.+. .+++.+|+.+|..++
T Consensus 605 --~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 605 --EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp --SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred --CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 567999986 688999998887654
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.02 E-value=3.9e-06 Score=73.26 Aligned_cols=76 Identities=26% Similarity=0.409 Sum_probs=56.2
Q ss_pred eEEEEEecCCc------eeEEeecCchHHHHHHhhcCceEEEecCCCCC------------cc-cCCCCceEEEEcC-HH
Q 009034 140 VTAKLLVPSDQ------IGCVIGKGGQIVQNIRSETGAQIRILKDEHLP------------SC-ALRSDELVQISGE-AS 199 (546)
Q Consensus 140 ~~~~l~Vp~~~------vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p------------~~-~~~~dr~v~I~G~-~~ 199 (546)
++.++.||.+. +|.|||++|.++|+|+++|||+|.|..+...- .. ....+=-|.|++. .+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788898654 89999999999999999999999998643210 00 0112236778884 32
Q ss_pred -----HHHHHHHHHHHHHhcC
Q 009034 200 -----VVKKALCQIASRLHDN 215 (546)
Q Consensus 200 -----~v~~A~~~I~~~l~~~ 215 (546)
.+.+|+.+|..+|...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 7889999999988653
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.72 E-value=1.3e-05 Score=87.47 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=53.5
Q ss_pred ceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009034 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRL 442 (546)
Q Consensus 369 ~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i 442 (546)
.....|.||.+.+|.|||+||.+||+|+++|||+|.|. ++-+|.|.++ .+++++|+.+|.+.+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999994 2358999985 688999998886543
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.68 E-value=6.8e-05 Score=64.01 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=58.5
Q ss_pred eEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009034 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 444 (546)
...|.|....++.|||++|+.|++|+..|.|.|+|..-+ .+..-.|+|.|++..-..|+.+|.....-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999997532 23566799999999999999999877653
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.52 E-value=2.9e-05 Score=85.50 Aligned_cols=97 Identities=23% Similarity=0.328 Sum_probs=29.5
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccC
Q 009034 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (546)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (546)
..+..|.+++..+++.+.+.......+.....+....+.||.+.++.|||++|.+||.|.++|||+|.|..
T Consensus 537 ~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d--------- 607 (726)
T 4aid_A 537 QALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND--------- 607 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC---------
Confidence 34677888888888865443322222223334557889999999999999999999999999999999853
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHHhc
Q 009034 187 RSDELVQISGE-ASVVKKALCQIASRLHD 214 (546)
Q Consensus 187 ~~dr~v~I~G~-~~~v~~A~~~I~~~l~~ 214 (546)
+..|.|.+. .+++++|+..|..++.+
T Consensus 608 --dG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 608 --DGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp --------CCSCHHHHHHHHHC-------
T ss_pred --CceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 456788775 78899999998887754
No 73
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.50 E-value=6e-05 Score=66.18 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=74.2
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCceEEEEecCcchhhhhhHHHHHHHHhcCcccccccc
Q 009034 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIER 363 (546)
Q Consensus 284 ~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~i~~~~~~~~erii~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 363 (546)
..+.|+|+...+|..||++|++|+.|+++.|-+|.+-.-+.+ . ..-+..++ .|.-...+.-
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-------------~----~~fI~naL--sPA~V~~V~i 96 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-------------L----ERIVKNLF--PGVKIESINV 96 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-------------H----HHHHHHHS--TTSCEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-------------H----HHHHHHhc--CCceEEEEEE
Confidence 378899999999999999999999999999988877643221 0 11122221 1221111111
Q ss_pred ccCCcceeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEe
Q 009034 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRIL 406 (546)
Q Consensus 364 ~~~~~~~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~ 406 (546)
...+......+.||.+..+..|||+|.+++-..+.||.+|.|.
T Consensus 97 ~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 97 RERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred eecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 1001246678999999999999999999999999999988874
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.39 E-value=7.5e-05 Score=65.54 Aligned_cols=99 Identities=24% Similarity=0.345 Sum_probs=71.2
Q ss_pred eEEEEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHHHH
Q 009034 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDR 122 (546)
Q Consensus 43 ~~~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~ 122 (546)
=.+.++|+...+|..||++|++|+.|+++.|-+|.|-+-. ..++ + .
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s-----------~d~~----------------~----f--- 81 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS-----------SDLE----------------R----I--- 81 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECC-----------SSHH----------------H----H---
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcC-----------CCHH----------------H----H---
Confidence 3468899999999999999999999999999999863321 1110 1 0
Q ss_pred HHHhhhcCCC-----CCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEe
Q 009034 123 VIAEELRGDE-----DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRIL 176 (546)
Q Consensus 123 i~~~~~~~~~-----~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~ 176 (546)
..+.+.+-. -...+....+.+.||.++.+..|||+|++++-...-||.+|.|.
T Consensus 82 -I~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 82 -VKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp -HHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred -HHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 111111000 00002345688999999999999999999999999999998874
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.07 E-value=0.00014 Score=80.10 Aligned_cols=65 Identities=29% Similarity=0.380 Sum_probs=11.4
Q ss_pred eeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEc-CHHHHHHHHHHHHHHHHhc
Q 009034 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~~ 445 (546)
....|.||.+.++.|||+||.+||+|.++|||+|.|. ++-.|.|.+ +.+++++|+.+|...+.+.
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-----------DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp C------------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-----------CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 4567999999999999999999999999999999984 234677777 4888999999888777654
No 76
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.00 E-value=0.00098 Score=56.92 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=58.8
Q ss_pred EEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009034 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (546)
Q Consensus 142 ~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~ 214 (546)
+.|.|....++.|+|++|+.|+.|+..|++.|++..-+. +..-.|+|.|++..-.+|+.+|..+..-
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC------CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999976422 3466799999999999999999887744
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.90 E-value=0.0091 Score=56.93 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=64.6
Q ss_pred CcccccccCCchhHHHH-HhhhCCeEEecCCCCCCCceEEEEecCcchhhhhhHHHHHHHHhcCccccccccccCCccee
Q 009034 293 ANIGGVIGKGGAIINQI-RQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFT 371 (546)
Q Consensus 293 ~~~g~IIGk~G~~Ik~i-~~~sga~I~i~~~~~~~~erii~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (546)
+-+|..||++|++|+.| ++-.|-+|.|-.-+.+ . ..-+..++ .|.-...+.-... ....
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------p----~~fi~nal--sPA~V~~V~i~~~-~~~~ 185 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------P----ARFVANAL--SPAKVVSVSVIDQ-TARA 185 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------H----HHHHHHHT--TTSCCSEEEEEET-TTTE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-------------H----HHHHHhcc--CCcceEEEEEEcC-CCcE
Confidence 34799999999999999 5555777776543211 0 01112222 1221111110000 1246
Q ss_pred EEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCC
Q 009034 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKE 409 (546)
Q Consensus 372 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~ 409 (546)
..+.||.++.+.-|||+|.+|+--.+.||.+|.|....
T Consensus 186 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 186 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 88999999999999999999999999999999997654
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.83 E-value=0.0058 Score=61.58 Aligned_cols=93 Identities=28% Similarity=0.289 Sum_probs=64.6
Q ss_pred CccceEecCCcHHHHHHHHHh-CCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcC
Q 009034 52 RKIGSIIGRGGEIVKQLRIDT-KSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (546)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (546)
+-+|..||++|++|+.|.++. |=+|.|-+- +.+. ..- + .+.+.+
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~-------------s~dp--------------~~f---i-----~nalsP 293 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY-------------DDDP--------------ARF---V-----ANALSP 293 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC-------------CSSH--------------HHH---H-----HHHTTT
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEc-------------CCCH--------------HHH---H-----HHhcCC
Confidence 458999999999999999998 888876321 1000 010 1 111111
Q ss_pred CCC----CCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCC
Q 009034 131 DED----SDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDE 179 (546)
Q Consensus 131 ~~~----~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~ 179 (546)
-.- ........+.+.||..+.+..|||+|.+++-...-||.+|.|....
T Consensus 294 A~V~~V~~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 294 AKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp SCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred cceeEEEEEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 000 0001134688999999999999999999999999999999997754
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.77 E-value=0.01 Score=59.77 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=66.3
Q ss_pred CcccccccCCchhHHHHHhhh-CCeEEecCCCCCCCceEEEEecCcchhhhhhHHHHHHHHhcCccccccccccCCccee
Q 009034 293 ANIGGVIGKGGAIINQIRQES-GAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFT 371 (546)
Q Consensus 293 ~~~g~IIGk~G~~Ik~i~~~s-ga~I~i~~~~~~~~erii~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (546)
+-+|..||++|++|+.|.++. |-+|.|-.-+.+ . ..-+..++ .|.-...+..-.. ....
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------p----~~fi~nal--sPA~V~~V~~~~~-~~~~ 308 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------P----ARFVANAL--SPAKVVSVSVIDQ-TARA 308 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------H----HHHHHHHT--TTSCCSEEEEEET-TTTE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-------------H----HHHHHHhc--CCcceeEEEEEcC-CCcE
Confidence 458999999999999999999 777776543211 0 11112221 1221111100000 1356
Q ss_pred EEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCC
Q 009034 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKE 409 (546)
Q Consensus 372 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~ 409 (546)
..+.||..+.+..|||+|.+++-..+.||.+|.|....
T Consensus 309 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 309 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 88999999999999999999999999999999997643
No 80
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.75 E-value=0.0027 Score=70.31 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=13.9
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccC
Q 009034 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (546)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (546)
+.+..|.+++..+++.+.+.......+.....+....+.||.+.++.|||++|.+|+.|.++||+.|.|..
T Consensus 527 ~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~--------- 597 (723)
T 3cdi_A 527 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED--------- 597 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---------
Confidence 45566778888887765543322112222334556788999999999999999999999999999998843
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHHh
Q 009034 187 RSDELVQISGE-ASVVKKALCQIASRLH 213 (546)
Q Consensus 187 ~~dr~v~I~G~-~~~v~~A~~~I~~~l~ 213 (546)
+..|.|.+. .+.+++|...|..++.
T Consensus 598 --dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 598 --DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------
T ss_pred --CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 456777664 5667778777766553
No 81
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.72 E-value=0.0094 Score=56.84 Aligned_cols=94 Identities=27% Similarity=0.244 Sum_probs=63.3
Q ss_pred CccceEecCCcHHHHHH-HHHhCCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcC
Q 009034 52 RKIGSIIGRGGEIVKQL-RIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (546)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i-~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (546)
+-+|..||++|++|+.| ++-.|-+|.|-+-..+ + ..- + .+.+.+
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p----------------~~f---i-----~nalsP 170 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------P----------------ARF---V-----ANALSP 170 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------H----------------HHH---H-----HHHTTT
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-----------H----------------HHH---H-----HhccCC
Confidence 45899999999999999 5667888876322100 0 010 1 111111
Q ss_pred CCCC----CCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCC
Q 009034 131 DEDS----DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180 (546)
Q Consensus 131 ~~~~----~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~ 180 (546)
-.-. .......+.+.||..+.+..|||+|++++.....||.+|.|....+
T Consensus 171 A~V~~V~i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 171 AKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp SCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred cceEEEEEEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 0000 0011236889999999999999999999999999999999977543
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.23 E-value=0.0022 Score=71.21 Aligned_cols=94 Identities=23% Similarity=0.338 Sum_probs=38.8
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccC
Q 009034 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (546)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (546)
+.+..|.+++..+++.+.+..... .......+....|.||.+.++.+||++|.+||.|.++||+.|.|..
T Consensus 566 ~aL~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--------- 635 (757)
T 1e3p_A 566 AALKQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED--------- 635 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---------
Confidence 456677888888887655433222 2222333445678899999999999999999999999999998853
Q ss_pred CCCceEEEEc-CHHHHHHHHHHHHHHH
Q 009034 187 RSDELVQISG-EASVVKKALCQIASRL 212 (546)
Q Consensus 187 ~~dr~v~I~G-~~~~v~~A~~~I~~~l 212 (546)
+..|.|+. +.+..++|+..|..+.
T Consensus 636 --dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 636 --DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ------CCCBSSHHHHCC---------
T ss_pred --CceEEEecCCHHHHHHHHHHHHHhc
Confidence 44577766 4566777766666544
No 83
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.38 E-value=0.055 Score=54.27 Aligned_cols=93 Identities=32% Similarity=0.449 Sum_probs=63.9
Q ss_pred cccccccCCchhHHHHHhhh-CCeEEecCCCCCCCceEEEEecCcchhhhhhHHHHHHHHhcCcccccccc-ccCCccee
Q 009034 294 NIGGVIGKGGAIINQIRQES-GAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIER-DSGLISFT 371 (546)
Q Consensus 294 ~~g~IIGk~G~~Ik~i~~~s-ga~I~i~~~~~~~~erii~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~ 371 (546)
-+|..||.+|.+|+.+..+. |-+|.+-.-+.+ . ..-+..++ .|.-...+.- +. ....
T Consensus 246 pvGacvg~~G~ri~~i~~el~ge~Idii~~s~d-------------~----~~fi~nal--~Pa~v~~v~~~d~--~~~~ 304 (344)
T 1hh2_P 246 PIGACIGEGGSRIAAILKELKGEKLDVLKWSDD-------------P----KQLIANAL--APATVIEVEILDK--ENKA 304 (344)
T ss_dssp HHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS-------------H----HHHHHHHT--CSSCCSEEEEEET--TTTE
T ss_pred ccceeeccCCcEeHHHHHHhCCCeeeEEecCCC-------------H----HHHHHHhc--CccEEEEEEEEcC--CCCE
Confidence 47999999999999999998 666665432211 0 11112222 1221111111 11 1356
Q ss_pred EEEEEccCcceeEEcCCChhHHHHHHhhCceEEEec
Q 009034 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILP 407 (546)
Q Consensus 372 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~ 407 (546)
..+.||..+.+.-|||+|.+++--.+.||.+|.|..
T Consensus 305 ~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 889999999999999999999999999999999965
No 84
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.97 E-value=0.01 Score=65.66 Aligned_cols=63 Identities=29% Similarity=0.365 Sum_probs=0.0
Q ss_pred eeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEc-CHHHHHHHHHHHHHHHH
Q 009034 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMTRLR 443 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~ 443 (546)
....+.||.+.++.|||++|.+|+.|.++||+.|.|.. +..|.|.+ +.+.+++|..+|...+.
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999999998842 34566666 45677778777665544
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.54 E-value=0.071 Score=53.48 Aligned_cols=92 Identities=27% Similarity=0.349 Sum_probs=63.1
Q ss_pred CccceEecCCcHHHHHHHHHh-CCeEEEcCCCCCCCceEEEEecCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcC
Q 009034 52 RKIGSIIGRGGEIVKQLRIDT-KSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (546)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (546)
+-+|..||.+|..|+.+..+. |-+|.|-+- +.+- .. .+ .+.+.+
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~-------------s~d~--------------~~---fi-----~nal~P 289 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKW-------------SDDP--------------KQ---LI-----ANALAP 289 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC-------------CSSH--------------HH---HH-----HHHTCS
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEec-------------CCCH--------------HH---HH-----HHhcCc
Confidence 458999999999999999998 677765221 1000 01 01 111110
Q ss_pred CCC----CCCCCceEEEEEecCCceeEEeecCchHHHHHHhhcCceEEEecC
Q 009034 131 DED----SDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKD 178 (546)
Q Consensus 131 ~~~----~~~~~~~~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~ 178 (546)
-.- ........+.+.||..+.+..|||+|++++....-||.+|.|...
T Consensus 290 a~v~~v~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 290 ATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp SCCSEEEEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEEEEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 000 001123468899999999999999999999999999999999764
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.67 E-value=0.0061 Score=67.71 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=20.9
Q ss_pred eeEEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009034 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRL 442 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i 442 (546)
....|.||.+.+|.|||++|.+||+|+++||+.|.|.. +..|.|... .+.++.|+.+|....
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 34568899999999999999999999999999999842 346777764 566666766665443
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=73.69 E-value=1.2 Score=39.03 Aligned_cols=29 Identities=21% Similarity=0.021 Sum_probs=25.0
Q ss_pred EEEEEecCCccceEecCCcHHHHHHHHHh
Q 009034 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 44 ~~rilip~~~~g~IIGk~G~~Ik~i~~~t 72 (546)
++.+.+-.+..|.||||.|+|++.|+--+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 45667778999999999999999999666
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=61.64 E-value=2.7 Score=33.47 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=24.0
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHh
Q 009034 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 45 ~rilip~~~~g~IIGk~G~~Ik~i~~~t 72 (546)
.++.|....-|.|||++|+.|++|+.+.
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 5777888889999999999999988653
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=58.64 E-value=2.6 Score=33.65 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=24.2
Q ss_pred eeEEEEEccCcceeEEcCCChhHHHHHHh
Q 009034 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~ 398 (546)
..+++.|....-|.|||++|..|++|++.
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 34678888889999999999999988653
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=49.40 E-value=9.4 Score=33.37 Aligned_cols=30 Identities=13% Similarity=-0.027 Sum_probs=25.9
Q ss_pred EEEEEeecCcccccccCCchhHHHHHhhhC
Q 009034 285 SLRLVCPVANIGGVIGKGGAIINQIRQESG 314 (546)
Q Consensus 285 ~~~v~vp~~~~g~IIGk~G~~Ik~i~~~sg 314 (546)
++.|.+..+..|.+|||.|.+++.|+--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 567778888999999999999999887664
No 91
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=41.88 E-value=26 Score=19.94 Aligned_cols=21 Identities=52% Similarity=0.833 Sum_probs=11.0
Q ss_pred cCCCCCCCCCCCCCCC-CCccccC
Q 009034 7 SYGKRSHSQTDYADHG-PNKRRYT 29 (546)
Q Consensus 7 ~~~~r~~~~~~~~~~~-~~~~~~~ 29 (546)
|+.+|.|++.. +.+ ..|||+-
T Consensus 2 smsrrrhsden--dggq~hkrr~t 23 (26)
T 3ul0_C 2 SMSRRRHSDEN--DGGQPHKRRKT 23 (26)
T ss_dssp -CCCCCCTTSC--SSCCCSCCCCC
T ss_pred ccccccccccc--CCCCccccccc
Confidence 56778887433 233 4555543
No 92
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=39.96 E-value=8 Score=36.11 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=26.1
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHhCCeE
Q 009034 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKI 76 (546)
Q Consensus 45 ~rilip~~~~g~IIGk~G~~Ik~i~~~tga~I 76 (546)
+.|.|..+..|.+|||.|++++.||.-+..-+
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 45556677899999999999999998876433
No 93
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=39.71 E-value=64 Score=23.36 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 418 DDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 418 ~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
++-.|.|+|-|++|.+-+..-.++|..+
T Consensus 40 ndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 40 NDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp SCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 4457999999999998887777887765
No 94
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=29.13 E-value=17 Score=35.48 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=29.2
Q ss_pred cceeEEEEEccCcc-eeEEcCCChhHHHHHH--------hhCceEEE
Q 009034 368 ISFTTRLLVPTSRI-GCLIGKGGSIITEMRR--------LTKANIRI 405 (546)
Q Consensus 368 ~~~~~~l~VP~~~v-G~IIGkgG~~Ik~I~~--------~Tga~I~i 405 (546)
..+...+.|..+-+ +.||||+|+.||+|.. ..+++|.+
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 35778888887755 9999999999998764 35666655
No 95
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=29.09 E-value=2.4e+02 Score=23.06 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=55.5
Q ss_pred CceEEEEecCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEecCCceeEEeecCch-----
Q 009034 86 EERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQ----- 160 (546)
Q Consensus 86 ~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~Vp~~~vg~iIGk~G~----- 160 (546)
..-+|.|+|-++.+ .+.+.+-.+++..+. .-.++..++-..+-+ .+|=-.|.
T Consensus 41 n~l~i~itgvpeqv-------------rkelakeaerl~~ef---------ni~v~y~imgsgsgv-m~i~f~gddlea~ 97 (170)
T 4hhu_A 41 NRLVIVITGVPEQV-------------RKELAKEAERLKAEF---------NINVQYQIMGSGSGV-MVIVFEGDDLEAL 97 (170)
T ss_dssp TEEEEEEESCCHHH-------------HHHHHHHHHHHHHHH---------TCEEEEEEECTTCCE-EEEEEECSCHHHH
T ss_pred CEEEEEEeCCcHHH-------------HHHHHHHHHHHHHhc---------ceEEEEEEEeCCceE-EEEEEecCcHHHH
Confidence 34578999999873 566666666665443 123344444333322 22323332
Q ss_pred ------HHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009034 161 ------IVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (546)
Q Consensus 161 ------~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (546)
.|++-+.-.|+-- ..-+ ..+-.+.|+|-+++|.+-+..-.+.|...
T Consensus 98 ekalkemirqarkfagtvt-ytl~--------gn~l~i~itgvpeqvrkelakeaerl~~e 149 (170)
T 4hhu_A 98 EKALKEMIRQARKFAGTVT-YTLS--------GNRLVIVITGVPEQVRKELAKEAERLKAE 149 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEEC--------SSEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcceEE-EEEe--------CCEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 3344444445332 2211 23456889999999999887777777654
No 96
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=28.89 E-value=91 Score=29.00 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=36.7
Q ss_pred EEEecCCccceEecCCcHHHHHHHHHhCCeEEEcCCCCCCCceEEEEecCC
Q 009034 46 RYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSAS 96 (546)
Q Consensus 46 rilip~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~ 96 (546)
-+.|+...+..++|+++..++.|.++++++|-|. . +..|-|.+..
T Consensus 151 vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG-----~-NG~IWi~~~~ 195 (235)
T 2z0s_A 151 IVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA-----R-NGRIHLECPN 195 (235)
T ss_dssp EEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE-----T-TTEEEEECSC
T ss_pred EEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe-----C-CCEEEEecCC
Confidence 3568888999999999999999999999999983 3 2356688753
No 97
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=28.12 E-value=66 Score=29.89 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=40.3
Q ss_pred EEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHH
Q 009034 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAK 432 (546)
Q Consensus 372 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~ 432 (546)
.-+.++...+..++|+++..++.|.+.+++.|-+-. +-.|=|.++.....
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~ 187 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVS 187 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHH
Confidence 346899999999999999999999999999998832 23677888876433
No 98
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.09 E-value=20 Score=32.98 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.1
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHh
Q 009034 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 45 ~rilip~~~~g~IIGk~G~~Ik~i~~~t 72 (546)
.++.|....-|.|||++|+.|++|+.+.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4566777888999999999999987653
No 99
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=28.09 E-value=17 Score=34.10 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.8
Q ss_pred eEEEEEccCcceeEEcCCChhHHHHHHh
Q 009034 371 TTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG~~Ik~I~~~ 398 (546)
.+++.|....-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4678888888999999999999988654
No 100
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=27.75 E-value=22 Score=33.46 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=24.3
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHh
Q 009034 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 45 ~rilip~~~~g~IIGk~G~~Ik~i~~~t 72 (546)
.++.|....-|.|||++|+.|++|+.+.
T Consensus 49 i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 49 TEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp EEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 6777888889999999999999988764
No 101
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.79 E-value=17 Score=33.51 Aligned_cols=35 Identities=29% Similarity=0.548 Sum_probs=26.8
Q ss_pred eEEEEEccCcceeEEcCCChhHHHHHH----hhC---ceEEE
Q 009034 371 TTRLLVPTSRIGCLIGKGGSIITEMRR----LTK---ANIRI 405 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG~~Ik~I~~----~Tg---a~I~i 405 (546)
.+++.|....-|.|||++|+.|++|++ .++ .+|.|
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i 82 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV 82 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEE
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEE
Confidence 356777788889999999999998864 455 45555
No 102
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=26.60 E-value=17 Score=34.08 Aligned_cols=28 Identities=11% Similarity=0.298 Sum_probs=24.0
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHHh
Q 009034 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 45 ~rilip~~~~g~IIGk~G~~Ik~i~~~t 72 (546)
.++.|....-|.|||++|+.|++|+.+.
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 5677888889999999999999988664
No 103
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=26.43 E-value=21 Score=33.64 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=24.8
Q ss_pred eeEEEEEccCcceeEEcCCChhHHHHHHh
Q 009034 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (546)
Q Consensus 370 ~~~~l~VP~~~vG~IIGkgG~~Ik~I~~~ 398 (546)
..+++.|....-|.|||++|..|++|++.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 45678888889999999999999998764
No 104
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=24.82 E-value=87 Score=29.05 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=44.0
Q ss_pred EEEEecCCceeEEeecCchHHHHHHhhcCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHH
Q 009034 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASR 211 (546)
Q Consensus 142 ~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~v~~A~~~I~~~ 211 (546)
+-+-++...+..++|+++..++.|.+.+++.|-+-. .-.|-|.++......+...|...
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHHHHH
Confidence 345677778889999999999999999999998843 34577888877555555555443
No 105
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.77 E-value=18 Score=33.77 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=24.6
Q ss_pred EEEEEecCCccceEecCCcHHHHHHHHHh
Q 009034 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 44 ~~rilip~~~~g~IIGk~G~~Ik~i~~~t 72 (546)
..++.|....-|.|||++|+.|++|+.+.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 35677888899999999999999988664
No 106
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=24.28 E-value=19 Score=36.18 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC
Q 009034 197 EASVVKKALCQIASRLHDNPSR 218 (546)
Q Consensus 197 ~~~~v~~A~~~I~~~l~~~~~~ 218 (546)
....|..|.-.|+.++++.+..
T Consensus 79 ~~qlva~acLfLA~K~EE~p~~ 100 (358)
T 2pk2_A 79 PGNSVAPAALFLAAKVEEQPKK 100 (358)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHHHHHHHHhhccCCCC
Confidence 4577788888888888887543
No 107
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=24.25 E-value=1.5e+02 Score=24.29 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=31.4
Q ss_pred HHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009034 392 ITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (546)
Q Consensus 392 Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 445 (546)
|++-|+..|+---... .++-.|.|+|-|++|.+-+..-.++|..+
T Consensus 105 irqarkfagtvtytl~---------gn~l~i~itgvpeqvrkelakeaerl~~e 149 (170)
T 4hhu_A 105 IRQARKFAGTVTYTLS---------GNRLVIVITGVPEQVRKELAKEAERLKAE 149 (170)
T ss_dssp HHHHHHTTCEEEEEEC---------SSEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcceEEEEEe---------CCEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 6666777775332221 23346999999999998888878888765
No 108
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.21 E-value=17 Score=33.83 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=23.9
Q ss_pred eEEEEEccCcceeEEcCCChhHHHHHHh
Q 009034 371 TTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (546)
Q Consensus 371 ~~~l~VP~~~vG~IIGkgG~~Ik~I~~~ 398 (546)
.+++.|....-|.|||++|+.|++|++.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4668888889999999999999988653
No 109
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=22.94 E-value=18 Score=33.27 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.9
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHH
Q 009034 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (546)
Q Consensus 45 ~rilip~~~~g~IIGk~G~~Ik~i~~~ 71 (546)
.++.|....-|.|||++|+.|++|+.+
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 355666678889999999999988865
No 110
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=22.79 E-value=1e+02 Score=28.71 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=39.7
Q ss_pred EEEEEccCcceeEEcCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHH
Q 009034 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAK 432 (546)
Q Consensus 372 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~v~I~G~-~~~v~ 432 (546)
.-+.|+...+..++|+++..+..|.+.+++.|-+-. +-.|-|.+. +..+.
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----------NG~IWi~~~~~~~~~ 200 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----------NGRIHLECPNEDLEA 200 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----------TTEEEEECSCHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----------CCEEEEecCCHHHHH
Confidence 447899999999999999999999999999998832 346778864 44433
No 111
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.99 E-value=1.1e+02 Score=24.53 Aligned_cols=51 Identities=8% Similarity=0.054 Sum_probs=34.2
Q ss_pred hHHHHHHhhcCceEEEecCCCCCc-ccCCCCceEEEEcCHHHHHHHHHHHHH
Q 009034 160 QIVQNIRSETGAQIRILKDEHLPS-CALRSDELVQISGEASVVKKALCQIAS 210 (546)
Q Consensus 160 ~~Ik~I~~~tga~I~i~~~~~~p~-~~~~~dr~v~I~G~~~~v~~A~~~I~~ 210 (546)
..|.+|..++++.++|....--.. ...-..=+|.+.|+.+++.+|+..+.+
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 478999999999999875310000 000011267889999999999887765
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=21.60 E-value=36 Score=33.06 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=26.7
Q ss_pred eEEEEEecCC-ccceEecCCcHHHHHHHH--------HhCCeEEE
Q 009034 43 TVYRYLCPIR-KIGSIIGRGGEIVKQLRI--------DTKSKIRI 78 (546)
Q Consensus 43 ~~~rilip~~-~~g~IIGk~G~~Ik~i~~--------~tga~I~i 78 (546)
+...|+|..+ +-+.||||+|+.||+|.. -++++|.+
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4556677765 567799999999998753 46777765
No 113
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.21 E-value=21 Score=33.62 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=24.6
Q ss_pred EEEEEecCCccceEecCCcHHHHHHHHHh
Q 009034 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (546)
Q Consensus 44 ~~rilip~~~~g~IIGk~G~~Ik~i~~~t 72 (546)
..++.|....-|.|||++|+.|++|+.+.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 35677778889999999999999998764
No 114
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=21.04 E-value=18 Score=33.29 Aligned_cols=34 Identities=29% Similarity=0.549 Sum_probs=25.9
Q ss_pred EEEEEccCcceeEEcCCChhHHHHHH----hhCceEEE
Q 009034 372 TRLLVPTSRIGCLIGKGGSIITEMRR----LTKANIRI 405 (546)
Q Consensus 372 ~~l~VP~~~vG~IIGkgG~~Ik~I~~----~Tga~I~i 405 (546)
+++.|....-|.|||++|+.|++|++ .++..++|
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 45667777889999999999998864 46655444
No 115
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=20.98 E-value=20 Score=33.50 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=22.0
Q ss_pred EEEEecCCccceEecCCcHHHHHHHHH
Q 009034 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (546)
Q Consensus 45 ~rilip~~~~g~IIGk~G~~Ik~i~~~ 71 (546)
.+|.|....-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 455666778899999999999988864
No 116
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=20.85 E-value=81 Score=18.16 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=9.2
Q ss_pred CcCCCCCCCCCCCCCCCCCcccc
Q 009034 6 NSYGKRSHSQTDYADHGPNKRRY 28 (546)
Q Consensus 6 ~~~~~r~~~~~~~~~~~~~~~~~ 28 (546)
+.+.||.+.=. ++++...+||+
T Consensus 5 rrrrkrkrewd-ddddppkkrrr 26 (28)
T 3ukx_C 5 RRRRKRKREWD-DDDDPPKKRRR 26 (28)
T ss_dssp -CCCCCCCCCC-CSSSCCSCCCC
T ss_pred HHHHHhhcccc-cCCCchhhhhc
Confidence 34445555433 33444444443
No 117
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=20.67 E-value=1.9e+02 Score=20.85 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=23.0
Q ss_pred CCceEEEEcCHHHHHHHHHHHHHHHhcCC
Q 009034 188 SDELVQISGEASVVKKALCQIASRLHDNP 216 (546)
Q Consensus 188 ~dr~v~I~G~~~~v~~A~~~I~~~l~~~~ 216 (546)
.|-.+.|+|-+++|.+-+..-.+.|.+.+
T Consensus 40 ndleiritgvpeqvrkelakeaerlakef 68 (85)
T 2kl8_A 40 NDLEIRITGVPEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp SCEEEEEESCCHHHHHHHHHHHHHHHHHT
T ss_pred CeeEEEEecChHHHHHHHHHHHHHHHHhc
Confidence 35569999999999998877777776643
No 118
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=20.59 E-value=19 Score=33.54 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=26.6
Q ss_pred EEEEEecCCceeEEeecCchHHHHHHhhcCceE
Q 009034 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQI 173 (546)
Q Consensus 141 ~~~l~Vp~~~vg~iIGk~G~~Ik~I~~~tga~I 173 (546)
.+.+.+.....+.||||.|++++.||.-+..-+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 355556677899999999999999998877544
Done!