BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009036
(546 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 39 TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN 98
+ E P F CP+S LM DPV+VS+G T+ER+ G T + + PN
Sbjct: 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61
Query: 99 LALKSTILNWCHKQSL 114
LKS I WC +
Sbjct: 62 YVLKSLIALWCESNGI 77
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 362 SDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNLA 418
+DSE Q ++A AL +++ K +V G V L+ ++ S + L N+A
Sbjct: 56 TDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 114
Query: 419 SCSDGRV-AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAG 476
S D + A++D+GGVE LV +L T Q+ L ++ G K + A G
Sbjct: 115 SGPDEAIKAIVDAGGVEVLVKLL---TSTDSEVQKEAARALANIASGPDEAIKAIVDAGG 171
Query: 477 MAEVLMRMERVGSEHVKEKAKRML 500
+ EVL+++ V+++A R L
Sbjct: 172 V-EVLVKLLTSTDSEVQKEAARAL 194
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL--DDQNKTAIGVXXXXXXXXXXXKSD 363
IV +G V +V +L + +E Q+ A A+ ++A D+ K + +D
Sbjct: 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141
Query: 364 SERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNLASC 420
SE Q ++A AL +++ K +V G V L+ ++ S + L N+AS
Sbjct: 142 SE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 200
Query: 421 SDGRV-AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465
+ A++D+GGVE L +L T Q+ L + GG
Sbjct: 201 PTSAIKAIVDAGGVEVLQKLL---TSTDSEVQKEAQRALENIKSGG 243
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 426 AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRM 484
A++D+GGVE LV +L T Q+ L ++ G K + A G+ EVL+++
Sbjct: 39 AIVDAGGVEVLVKLL---TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGV-EVLVKL 94
Query: 485 ERVGSEHVKEKAKRML 500
V+++A R L
Sbjct: 95 LTSTDSEVQKEAARAL 110
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 130 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 189
Query: 418 ASCSDG-RVAVLDSGGVECLVGML 440
A R V+ G ++ L+ +L
Sbjct: 190 AGAGSAFRDLVIKHGAIDPLLALL 213
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 61 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 120
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 121 A--GDGSAFRDLVIKHGAIDPLLALL 144
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 111 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 170
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 171 A--GDGSAFRDLVIKHGAIDPLLALL 194
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 67 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 126
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 127 A--GDGSAFRDLVIKHGAIDPLLALL 150
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 97 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 156
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 157 A--GDGSAFRDLVIKHGAIDPLLALL 180
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 87 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 146
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 147 A--GDGSAFRDLVIKHGAIDPLLALL 170
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 111 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 170
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 171 A--GDGSAFRDLVIKHGAIDPLLALL 194
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 111 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 170
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 171 A--GDGSAFRDLVIKHGAIDPLLALL 194
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 56 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 115
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 116 A--GDGSAFRDLVIKHGAIDPLLALL 139
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 60 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 119
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 120 A--GDGSAFRDLVIKHGAIDPLLALL 143
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 95 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 154
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 155 A--GDGSAFRDLVIKHGAIDPLLALL 178
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 61 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 120
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 121 A--GDGSAFRDLVIKHGAIDPLLALL 144
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 61 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 120
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 121 A--GDGSAFRDLVIKHGAIDPLLALL 144
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 60 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 119
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 120 A--GDGSAFRDLVIKHGAIDPLLALL 143
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 361 KSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNS--GHMTGRVLLILGNL 417
K+D Q +SA AL +++ S +TK +V G++ A + ++ S H++ + + LGN+
Sbjct: 56 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 115
Query: 418 ASCSDG---RVAVLDSGGVECLVGML 440
A DG R V+ G ++ L+ +L
Sbjct: 116 A--GDGSAFRDLVIKHGAIDPLLALL 139
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 45 EFLCPVSGSLMADPVVVSSGH-TFERACAHVCKTLGFTPTLVDGTTP------DFSTVIP 97
EFL P+ +LM DPVV+ S T +R+ + + L L D T P + P
Sbjct: 22 EFLDPIMSTLMCDPVVLPSSRVTVDRST--IARHL-----LSDQTDPFNRSPLTMDQIRP 74
Query: 98 NLALKSTILNW 108
N LK I W
Sbjct: 75 NTELKEKIQRW 85
>pdb|1YFK|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YFK|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|C Chain C, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|D Chain D, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|E Chain E, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|F Chain F, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|G Chain G, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|H Chain H, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|I Chain I, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|J Chain J, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|K Chain K, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|L Chain L, Crystal Structure Of Human B Type Phosphoglycerate Mutase
Length = 262
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 112 QSLNPPKPLEFSSAEKLVRASMESSQSKGKA 142
++L P KP++F E+ VR +ME+ ++GKA
Sbjct: 222 KNLKPIKPMQFLGDEETVRKAMEAVAAQGKA 252
>pdb|3PWE|A Chain A, Crystal Structure Of The E. Coli Beta Clamp Mutant R103c,
I305c, C260s, C333s At 2.2a Resolution
pdb|3PWE|B Chain B, Crystal Structure Of The E. Coli Beta Clamp Mutant R103c,
I305c, C260s, C333s At 2.2a Resolution
Length = 366
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 23/98 (23%)
Query: 57 DPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNP 116
+P+ V G RA HV + FT LVDG PD+ V+P NP
Sbjct: 212 NPLRVQIGSNNIRA--HVGDFI-FTSKLVDGRFPDYRRVLPK----------------NP 252
Query: 117 PKPLEFSS---AEKLVRASMESSQS-KGKAMAVSEKEL 150
K LE S + RA++ S++ +G + VSE +L
Sbjct: 253 DKHLEAGSDLLKQAFARAAILSNEKFRGVRLYVSENQL 290
>pdb|3BJG|A Chain A, Structure Of Rivax: A Human Ricin Vaccine
Length = 268
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 127 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 166
>pdb|1UQ4|A Chain A, Ricin A-chain (recombinant) R213d Mutant
Length = 263
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 122 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 161
>pdb|2VC3|A Chain A, Ricin A-Chain (Recombinant) E177d Mutant With A Bound
Acetate
pdb|2VC4|A Chain A, Ricin A-Chain (Recombinant) E177d Mutant
Length = 267
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 126 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 165
>pdb|3SRP|A Chain A, Structure Of Rivax: A Human Ricin Vaccine
Length = 268
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 127 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 166
>pdb|1IFS|A Chain A, Ricin A-Chain (Recombinant) Complex With Adenosine
(Adenosine Becomes Adenine In The Complex)
pdb|1IFT|A Chain A, Ricin A-Chain (Recombinant)
pdb|1IFU|A Chain A, Ricin A-Chain (Recombinant) Complex With Formycin
Length = 263
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 126 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 165
>pdb|1OBS|A Chain A, Structure Of Ricin A Chain Mutant
pdb|1OBT|A Chain A, Structure Of Ricin A Chain Mutant, Complex With Amp
Length = 267
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 126 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 165
>pdb|2AAI|A Chain A, Crystallographic Refinement Of Ricin To 2.5 Angstroms
pdb|1BR5|A Chain A, Ricin A Chain (Recombinant) Complex With Neopterin
pdb|1IL3|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor 7-
Deazaguanine
pdb|1IL4|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor 9-
Deazaguanine
pdb|1IL5|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor
2,5-diamino- 4,6-dihydroxypyrimidine (ddp)
pdb|1IL5|B Chain B, Structure Of Ricin A Chain Bound With Inhibitor
2,5-diamino- 4,6-dihydroxypyrimidine (ddp)
pdb|1IL9|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor
8-Methyl-9- Oxoguanine
pdb|3RTI|A Chain A, Crystal Structure Of Ricin Bound With Formycin
Monophosphate
pdb|3RTJ|A Chain A, Crystal Structure Of Ricin Bound With Dinucleotide Apg
pdb|4ESI|A Chain A, Structure Of Ricin A Chain Bound With
N-((1h-1,2,3-Triazol-4-Yl)
Methyl-2-Amino-4-Oxo-3,4-Dihydropteridine-7-Carboxamide
pdb|4HUO|X Chain X, Stucture Of Ricin A Chain Bound With N-(N-(Pterin-7-Yl)
Carbonylglycyl)-L-Phenylalanine
pdb|4HUP|X Chain X, Structure Of Ricin A Chain Bound With N-(N-(Pterin-7-Yl)
Carbonylglycyl)-L-Phenylalanyl)-L-Phenylalanine
pdb|4HV7|X Chain X, Sructure Of Ricin A Chain Bound With N-(N-(Pterin-7-Yl)
Carbonylglycyl)glycine
Length = 267
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 126 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 165
>pdb|1BR6|A Chain A, Ricin A Chain (Recombinant) Complex With Pteroic Acid
pdb|1RTC|A Chain A, The Structure Of Recombinant Ricin A Chain At 2.3
Angstroms
pdb|2P8N|A Chain A, Ricin A-Chain (Recombinant) Complex With Adenine
pdb|2PJO|A Chain A, Ricin A-Chain (Recombinant) Complex With N-Methylurea
pdb|2R2X|A Chain A, Ricin A-Chain (Recombinant) Complex With Urea
pdb|2R3D|A Chain A, Ricin A-Chain (Recombinant) Complex With Acetamide
pdb|3HIO|A Chain A, Crystal Structure Of Ricin A-Chain In Complex With The
Cyclic Tetranucleotide Inhibitor, A Transition State
Analogue
pdb|4HV3|A Chain A, Structure Of Ricin A Chain Bound With
N-(N-(Pterin-7-Yl)carbonyl-L- Serinyl)-L-Tryptophan
Length = 268
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 127 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 166
>pdb|1UQ5|A Chain A, Ricin A-Chain (Recombinant) N122a Mutant
Length = 263
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 122 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 161
>pdb|3EJ5|X Chain X, Complex Of Ricin A Chain And Pyrimidine-Based Inhibitor
Length = 257
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 122 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 161
>pdb|3PX8|X Chain X, Rta In Complex With 7-Carboxy-Pterin
pdb|3PX9|X Chain X, Rta In Complex With N-(Furanylmethyl)-7-Carbamoyl-Pterin
Length = 258
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 123 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 162
>pdb|1J1M|A Chain A, Ricin A-Chain (Recombinant) At 100k
Length = 268
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 127 LEQLAGNLREDIELGNGPLEEAISALYYYSTGGTQLPTLA 166
>pdb|3MK9|A Chain A, Stabilized Ricin Immunogen 1-3344-198
Length = 189
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 117 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 156
>pdb|4IMV|A Chain A, Ricin A-chain Variant 1-33/44-198 With Engineered
Disulfide Bond, R48c/t77c/d75n
Length = 189
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 117 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 156
>pdb|3LC9|A Chain A, Ricin A-Chain Variant 1-3344-198 With Engineered Disulfide
Bond
Length = 189
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLA 472
+E L G LR+ EL E +S LY S GG + LA
Sbjct: 117 LEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLA 156
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 20/107 (18%)
Query: 29 TKAHQLQKPQTAEPPGEFL----CPVSGSLMADPVVVSSGHTFERACAHVC-KTLGFT-- 81
+K H K + P F+ C + ++ADPV S H F R C C K +G
Sbjct: 3 SKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCP 62
Query: 82 -------PTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLE 121
PT ++ F ++ +L +K C Q N LE
Sbjct: 63 SCRYPCFPTDLESPVKSFLNILNSLMVK------CPAQDCNEEVSLE 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,757,624
Number of Sequences: 62578
Number of extensions: 430074
Number of successful extensions: 1107
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 67
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)